Query 008651
Match_columns 558
No_of_seqs 168 out of 1787
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 14:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2.1E-45 4.6E-50 395.3 36.9 519 2-534 46-568 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.2E-41 2.6E-46 348.8 29.2 442 1-529 29-490 (498)
3 PRK10207 dipeptide/tripeptide 100.0 1.5E-37 3.3E-42 334.2 39.7 447 1-531 22-481 (489)
4 TIGR00924 yjdL_sub1_fam amino 100.0 1.2E-35 2.6E-40 319.1 37.4 436 2-528 19-470 (475)
5 PRK15462 dipeptide/tripeptide 100.0 3.8E-35 8.3E-40 311.5 38.6 443 1-518 17-469 (493)
6 PRK09584 tppB putative tripept 100.0 2.1E-34 4.6E-39 311.3 37.1 443 2-530 30-483 (500)
7 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.7E-27 3.7E-32 261.3 40.9 335 7-407 1-342 (654)
8 PRK05122 major facilitator sup 99.9 7.4E-25 1.6E-29 230.7 33.1 361 6-526 28-389 (399)
9 TIGR01299 synapt_SV2 synaptic 99.9 8E-25 1.7E-29 243.2 34.2 155 13-201 186-353 (742)
10 PRK10077 xylE D-xylose transpo 99.9 2.5E-25 5.4E-30 239.9 29.4 407 24-539 50-470 (479)
11 PRK03545 putative arabinose tr 99.9 1.1E-24 2.4E-29 228.9 32.1 348 18-526 33-380 (390)
12 PRK14995 methyl viologen resis 99.9 4.9E-25 1.1E-29 238.7 30.0 381 14-488 26-412 (495)
13 PRK12382 putative transporter; 99.9 2.1E-24 4.5E-29 226.7 31.1 360 7-525 29-388 (392)
14 PRK11646 multidrug resistance 99.9 2.3E-24 5.1E-29 227.1 30.4 340 3-489 20-359 (400)
15 PRK11551 putative 3-hydroxyphe 99.9 4.7E-24 1E-28 225.0 32.7 359 16-525 37-395 (406)
16 TIGR00903 2A0129 major facilit 99.9 6.2E-24 1.4E-28 221.0 32.8 360 5-523 3-362 (368)
17 PRK10504 putative transporter; 99.9 7.4E-24 1.6E-28 228.1 33.7 389 5-489 22-415 (471)
18 PRK09705 cynX putative cyanate 99.9 5E-24 1.1E-28 224.1 31.1 360 10-532 26-387 (393)
19 TIGR00893 2A0114 d-galactonate 99.9 9.8E-24 2.1E-28 219.8 30.2 154 13-200 13-166 (399)
20 PRK10489 enterobactin exporter 99.9 7E-24 1.5E-28 224.7 29.4 374 14-538 38-411 (417)
21 TIGR00900 2A0121 H+ Antiporter 99.9 7.4E-24 1.6E-28 219.0 28.7 352 4-487 10-361 (365)
22 COG2814 AraJ Arabinose efflux 99.9 1.4E-23 3.1E-28 213.8 30.0 348 18-526 37-386 (394)
23 PRK10642 proline/glycine betai 99.9 2.6E-23 5.7E-28 225.0 33.2 157 12-194 34-204 (490)
24 TIGR00711 efflux_EmrB drug res 99.9 4.7E-24 1E-28 230.2 27.2 382 13-488 21-409 (485)
25 PRK11663 regulatory protein Uh 99.9 2.6E-23 5.7E-28 221.6 30.9 144 18-195 47-190 (434)
26 PRK10054 putative transporter; 99.9 7.5E-24 1.6E-28 222.9 26.0 342 3-488 17-358 (395)
27 TIGR00899 2A0120 sugar efflux 99.9 5.7E-23 1.2E-27 213.9 31.7 362 4-524 8-372 (375)
28 TIGR00890 2A0111 Oxalate/Forma 99.9 1.5E-23 3.2E-28 217.5 26.3 333 14-487 23-355 (377)
29 TIGR00892 2A0113 monocarboxyla 99.9 1.6E-23 3.4E-28 224.5 26.4 150 18-202 43-193 (455)
30 PF07690 MFS_1: Major Facilita 99.9 5.2E-24 1.1E-28 219.1 21.9 345 4-480 7-352 (352)
31 PRK12307 putative sialic acid 99.9 5.4E-23 1.2E-27 218.3 30.3 144 14-191 38-181 (426)
32 PRK15402 multidrug efflux syst 99.9 1E-22 2.3E-27 214.9 31.5 331 19-487 38-368 (406)
33 TIGR02332 HpaX 4-hydroxyphenyl 99.9 6E-23 1.3E-27 217.3 29.6 152 14-199 28-185 (412)
34 PRK09556 uhpT sugar phosphate 99.9 4.9E-23 1.1E-27 221.6 29.2 152 17-197 52-206 (467)
35 PRK10406 alpha-ketoglutarate t 99.9 1.1E-22 2.3E-27 216.8 31.5 157 13-195 41-211 (432)
36 PRK09874 drug efflux system pr 99.9 3.1E-23 6.6E-28 218.7 27.0 367 4-525 25-397 (408)
37 TIGR00887 2A0109 phosphate:H+ 99.9 2.5E-22 5.5E-27 218.0 33.8 146 25-198 52-220 (502)
38 cd06174 MFS The Major Facilita 99.9 1.4E-22 3E-27 207.8 29.7 339 4-523 10-349 (352)
39 COG2271 UhpC Sugar phosphate p 99.9 1.5E-23 3.2E-28 211.0 21.3 387 7-527 39-435 (448)
40 TIGR00898 2A0119 cation transp 99.9 1.8E-22 3.9E-27 219.3 30.8 385 18-532 113-500 (505)
41 PRK10213 nepI ribonucleoside t 99.9 6.2E-22 1.3E-26 208.3 33.5 151 11-196 38-188 (394)
42 TIGR00879 SP MFS transporter, 99.9 4.1E-23 9E-28 221.0 25.1 404 26-531 68-475 (481)
43 PRK10091 MFS transport protein 99.9 3.3E-22 7.1E-27 209.5 30.7 153 11-198 21-173 (382)
44 TIGR00891 2A0112 putative sial 99.9 1.9E-22 4.2E-27 211.7 28.2 147 16-196 34-182 (405)
45 TIGR00894 2A0114euk Na(+)-depe 99.9 2.5E-22 5.4E-27 216.0 28.4 377 23-524 70-448 (465)
46 PRK09952 shikimate transporter 99.9 1.2E-21 2.5E-26 209.1 33.3 152 16-194 45-211 (438)
47 TIGR00710 efflux_Bcr_CflA drug 99.9 1E-21 2.2E-26 205.1 31.5 330 18-486 29-358 (385)
48 KOG0569 Permease of the major 99.9 1.6E-22 3.5E-27 212.0 25.2 401 31-544 62-472 (485)
49 PRK11273 glpT sn-glycerol-3-ph 99.9 1.3E-21 2.9E-26 209.5 32.8 152 15-197 50-202 (452)
50 PRK11195 lysophospholipid tran 99.9 1.2E-21 2.5E-26 206.1 30.4 140 19-196 28-167 (393)
51 PRK03893 putative sialic acid 99.9 5.4E-22 1.2E-26 215.0 28.7 145 14-192 40-184 (496)
52 TIGR00895 2A0115 benzoate tran 99.9 7.6E-22 1.6E-26 206.4 28.8 361 14-486 37-397 (398)
53 PRK15011 sugar efflux transpor 99.9 1.5E-21 3.2E-26 205.4 31.1 362 3-525 25-390 (393)
54 PRK15075 citrate-proton sympor 99.9 1.5E-21 3.3E-26 208.1 30.9 151 14-190 35-199 (434)
55 PRK15403 multidrug efflux syst 99.9 3.5E-21 7.6E-26 203.8 33.1 159 7-199 21-187 (413)
56 PRK03633 putative MFS family t 99.9 9.6E-22 2.1E-26 205.9 28.5 350 4-520 17-366 (381)
57 PRK03699 putative transporter; 99.9 3.1E-21 6.8E-26 203.0 31.6 347 17-523 30-377 (394)
58 TIGR00897 2A0118 polyol permea 99.9 6.4E-21 1.4E-25 201.2 33.3 373 6-525 26-400 (402)
59 PLN00028 nitrate transmembrane 99.9 1.3E-21 2.8E-26 210.9 27.6 148 18-200 60-216 (476)
60 PRK10473 multidrug efflux syst 99.9 4.8E-21 1E-25 201.2 31.3 157 8-199 18-174 (392)
61 PRK11102 bicyclomycin/multidru 99.9 5.6E-21 1.2E-25 199.4 31.5 157 8-199 6-162 (377)
62 TIGR00881 2A0104 phosphoglycer 99.9 5.2E-22 1.1E-26 206.0 23.5 151 15-199 16-167 (379)
63 PRK11043 putative transporter; 99.9 5E-21 1.1E-25 201.7 31.1 160 7-200 17-178 (401)
64 PF00854 PTR2: POT family; In 99.9 2.5E-23 5.4E-28 217.1 13.4 365 60-473 1-370 (372)
65 PRK09528 lacY galactoside perm 99.9 1.5E-21 3.2E-26 207.2 25.8 381 4-526 21-403 (420)
66 PRK11652 emrD multidrug resist 99.9 9.5E-21 2.1E-25 199.1 30.4 145 18-196 32-176 (394)
67 KOG2532 Permease of the major 99.9 1.9E-21 4.2E-26 206.0 24.2 378 21-526 65-447 (466)
68 KOG0254 Predicted transporter 99.9 2.9E-21 6.2E-26 210.2 26.2 406 30-544 90-501 (513)
69 KOG1330 Sugar transporter/spin 99.9 5.2E-23 1.1E-27 208.8 10.6 164 5-203 45-209 (493)
70 TIGR00712 glpT glycerol-3-phos 99.9 9.1E-21 2E-25 202.3 27.9 154 15-199 48-202 (438)
71 TIGR00902 2A0127 phenyl propri 99.9 2.2E-20 4.7E-25 195.8 30.1 349 13-522 24-375 (382)
72 TIGR00792 gph sugar (Glycoside 99.9 5.3E-20 1.1E-24 196.0 32.8 353 5-490 11-381 (437)
73 TIGR00889 2A0110 nucleoside tr 99.9 7.8E-20 1.7E-24 193.8 31.3 377 14-529 23-405 (418)
74 PRK10133 L-fucose transporter; 99.9 7E-20 1.5E-24 195.2 30.5 130 16-176 48-177 (438)
75 TIGR00896 CynX cyanate transpo 99.9 2.2E-20 4.8E-25 193.5 25.5 332 9-490 15-349 (355)
76 TIGR00883 2A0106 metabolite-pr 99.9 5.3E-20 1.1E-24 192.0 28.3 157 15-197 14-185 (394)
77 PRK15034 nitrate/nitrite trans 99.9 1.3E-19 2.9E-24 191.0 29.7 160 12-201 52-230 (462)
78 TIGR00882 2A0105 oligosacchari 99.9 6.1E-20 1.3E-24 193.2 27.3 374 7-522 16-391 (396)
79 PRK08633 2-acyl-glycerophospho 99.9 9.7E-20 2.1E-24 216.9 32.1 344 10-487 26-382 (1146)
80 PF05977 MFS_3: Transmembrane 99.9 2.2E-19 4.8E-24 193.5 31.0 330 21-487 37-367 (524)
81 PRK11128 putative 3-phenylprop 99.9 2E-19 4.4E-24 188.4 29.6 326 11-487 22-353 (382)
82 PRK11010 ampG muropeptide tran 99.9 8.3E-19 1.8E-23 189.6 33.1 369 8-526 27-403 (491)
83 PRK06814 acylglycerophosphoeth 99.9 1.5E-19 3.3E-24 215.0 29.2 340 29-487 52-394 (1140)
84 TIGR00886 2A0108 nitrite extru 99.8 4.6E-20 1E-24 191.4 21.1 151 7-191 15-176 (366)
85 TIGR00885 fucP L-fucose:H+ sym 99.8 8E-19 1.7E-23 185.5 30.1 155 11-196 20-200 (410)
86 TIGR00901 2A0125 AmpG-related 99.8 5.7E-19 1.2E-23 183.0 27.8 335 11-473 5-355 (356)
87 COG2223 NarK Nitrate/nitrite t 99.8 2.4E-19 5.3E-24 181.0 22.9 370 7-528 27-403 (417)
88 PRK11902 ampG muropeptide tran 99.8 7.6E-18 1.7E-22 177.7 33.5 151 13-197 19-176 (402)
89 PF00083 Sugar_tr: Sugar (and 99.8 9.5E-24 2.1E-28 225.9 -19.1 395 30-540 47-450 (451)
90 TIGR00806 rfc RFC reduced fola 99.8 6.9E-18 1.5E-22 175.0 22.1 152 14-201 46-201 (511)
91 PRK10429 melibiose:sodium symp 99.8 1.8E-16 3.8E-21 170.9 32.6 357 6-490 19-394 (473)
92 KOG3764 Vesicular amine transp 99.8 6.9E-18 1.5E-22 168.2 19.3 150 22-204 99-248 (464)
93 PRK09848 glucuronide transport 99.8 2.6E-16 5.6E-21 168.5 33.1 351 5-489 20-388 (448)
94 KOG0255 Synaptic vesicle trans 99.8 2.4E-16 5.1E-21 172.1 32.3 140 22-198 111-250 (521)
95 TIGR01301 GPH_sucrose GPH fami 99.8 3.1E-16 6.7E-21 166.5 29.6 428 7-530 18-475 (477)
96 PRK09669 putative symporter Ya 99.8 6.8E-16 1.5E-20 165.1 32.4 348 7-490 23-389 (444)
97 PF06609 TRI12: Fungal trichot 99.8 6.9E-16 1.5E-20 166.3 31.9 148 16-199 66-213 (599)
98 TIGR00788 fbt folate/biopterin 99.8 2.6E-16 5.7E-21 169.0 27.9 362 10-488 42-412 (468)
99 KOG2533 Permease of the major 99.8 7E-16 1.5E-20 164.2 29.1 150 22-205 74-229 (495)
100 TIGR00805 oat sodium-independe 99.7 4.4E-17 9.5E-22 180.6 16.5 185 9-200 48-278 (633)
101 PRK11462 putative transporter; 99.7 1.8E-14 3.9E-19 154.6 33.8 167 6-198 22-199 (460)
102 PF13347 MFS_2: MFS/sugar tran 99.7 5E-16 1.1E-20 165.3 21.5 351 7-490 15-385 (428)
103 KOG2504 Monocarboxylate transp 99.7 4.3E-16 9.3E-21 167.3 20.2 418 6-526 55-476 (509)
104 COG0738 FucP Fucose permease [ 99.7 4.7E-15 1E-19 149.1 25.2 133 14-177 33-165 (422)
105 TIGR02718 sider_RhtX_FptX side 99.7 1.8E-14 3.9E-19 151.3 31.0 161 10-201 18-182 (390)
106 PTZ00207 hypothetical protein; 99.7 7.8E-14 1.7E-18 151.3 36.4 149 15-195 48-197 (591)
107 KOG2615 Permease of the major 99.7 3.7E-15 8E-20 148.0 23.7 116 27-177 66-181 (451)
108 KOG0253 Synaptic vesicle trans 99.7 2.3E-15 4.9E-20 148.4 20.7 413 15-533 99-526 (528)
109 COG2807 CynX Cyanate permease 99.7 2.5E-14 5.5E-19 141.8 27.7 331 14-494 32-364 (395)
110 PF03825 Nuc_H_symport: Nucleo 99.7 8.3E-14 1.8E-18 146.0 29.7 367 14-527 23-396 (400)
111 PF01306 LacY_symp: LacY proto 99.6 2E-14 4.4E-19 148.5 21.5 367 14-527 28-401 (412)
112 KOG4686 Predicted sugar transp 99.6 1.9E-15 4.1E-20 143.9 11.9 374 15-525 65-442 (459)
113 KOG0252 Inorganic phosphate tr 99.6 5.2E-15 1.1E-19 150.3 13.2 141 26-193 81-236 (538)
114 COG2211 MelB Na+/melibiose sym 99.6 2.6E-12 5.5E-17 134.3 31.9 357 7-495 26-401 (467)
115 PF11700 ATG22: Vacuole efflux 99.5 1.6E-11 3.5E-16 131.3 33.2 358 31-524 72-466 (477)
116 PF03209 PUCC: PUCC protein; 99.5 1.8E-10 4E-15 117.3 30.9 343 22-490 8-364 (403)
117 KOG2563 Permease of the major 99.4 1.3E-11 2.8E-16 126.0 20.8 383 15-537 66-461 (480)
118 TIGR00880 2_A_01_02 Multidrug 99.4 3.9E-12 8.4E-17 112.0 10.7 132 35-200 4-135 (141)
119 PRK05122 major facilitator sup 99.4 1.4E-11 3.1E-16 129.6 16.7 162 6-204 229-390 (399)
120 PRK10642 proline/glycine betai 99.4 3E-11 6.4E-16 131.0 19.5 165 5-200 262-427 (490)
121 PRK15011 sugar efflux transpor 99.4 2E-11 4.3E-16 128.5 17.4 157 10-201 233-389 (393)
122 TIGR01272 gluP glucose/galacto 99.3 1.3E-10 2.9E-15 118.0 22.3 80 109-194 9-104 (310)
123 PRK09556 uhpT sugar phosphate 99.3 2E-11 4.2E-16 131.6 16.0 163 7-201 272-447 (467)
124 COG2270 Permeases of the major 99.3 2.2E-10 4.7E-15 116.6 21.3 340 13-490 35-404 (438)
125 TIGR00899 2A0120 sugar efflux 99.3 4E-11 8.8E-16 124.6 16.4 155 11-200 217-371 (375)
126 cd06174 MFS The Major Facilita 99.3 3.7E-11 8E-16 122.9 15.8 161 5-199 187-348 (352)
127 TIGR00890 2A0111 Oxalate/Forma 99.3 4.2E-11 9E-16 124.0 14.7 152 12-196 224-375 (377)
128 PRK03545 putative arabinose tr 99.3 1.5E-10 3.3E-15 121.5 18.6 162 7-203 219-380 (390)
129 TIGR00889 2A0110 nucleoside tr 99.3 7.4E-11 1.6E-15 125.2 16.3 160 12-202 227-401 (418)
130 PRK03699 putative transporter; 99.3 4.9E-11 1.1E-15 125.5 14.6 158 6-198 218-375 (394)
131 PRK09705 cynX putative cyanate 99.3 1.4E-10 3.1E-15 121.9 17.0 165 5-204 217-382 (393)
132 TIGR01299 synapt_SV2 synaptic 99.2 8.8E-11 1.9E-15 131.4 15.7 133 33-200 599-731 (742)
133 PRK09874 drug efflux system pr 99.2 2.1E-10 4.5E-15 120.9 16.5 155 13-201 239-396 (408)
134 PRK12382 putative transporter; 99.2 1.6E-10 3.5E-15 121.4 15.3 157 7-200 230-386 (392)
135 PRK10489 enterobactin exporter 99.2 1.6E-10 3.4E-15 122.5 15.3 159 10-202 240-398 (417)
136 PF03137 OATP: Organic Anion T 99.2 1.4E-12 3E-17 141.4 -0.6 189 7-206 16-253 (539)
137 PRK11551 putative 3-hydroxyphe 99.2 2.5E-10 5.4E-15 120.4 16.4 159 7-200 234-393 (406)
138 PRK09528 lacY galactoside perm 99.2 1.7E-10 3.6E-15 122.5 14.9 152 14-199 244-399 (420)
139 PRK03893 putative sialic acid 99.2 2.4E-10 5.2E-15 123.9 16.3 148 12-191 294-441 (496)
140 TIGR00883 2A0106 metabolite-pr 99.2 1.3E-10 2.8E-15 121.1 13.5 157 5-192 231-390 (394)
141 PRK09952 shikimate transporter 99.2 4.4E-10 9.6E-15 120.0 17.8 168 5-202 262-432 (438)
142 PRK03633 putative MFS family t 99.2 3.4E-10 7.4E-15 118.5 16.4 152 10-199 217-368 (381)
143 TIGR00902 2A0127 phenyl propri 99.2 4.7E-10 1E-14 117.6 16.8 158 6-200 218-376 (382)
144 PF03092 BT1: BT1 family; Int 99.2 1.5E-08 3.3E-13 107.7 28.4 161 14-202 10-174 (433)
145 KOG2816 Predicted transporter 99.2 3.7E-09 8.1E-14 112.2 23.1 353 4-490 29-393 (463)
146 TIGR00897 2A0118 polyol permea 99.2 1E-09 2.3E-14 115.8 17.7 164 5-200 234-398 (402)
147 PRK11273 glpT sn-glycerol-3-ph 99.2 4.1E-10 8.9E-15 120.8 14.8 163 6-200 266-432 (452)
148 TIGR00893 2A0114 d-galactonate 99.2 6.1E-10 1.3E-14 115.7 15.4 167 6-200 228-396 (399)
149 COG2814 AraJ Arabinose efflux 99.1 1.7E-09 3.7E-14 111.1 17.8 164 6-204 224-387 (394)
150 TIGR00891 2A0112 putative sial 99.1 4.5E-10 9.9E-15 117.8 14.2 144 11-187 256-400 (405)
151 TIGR00892 2A0113 monocarboxyla 99.1 4.9E-10 1.1E-14 120.3 14.3 158 7-198 255-416 (455)
152 PRK11663 regulatory protein Uh 99.1 8.3E-10 1.8E-14 117.8 15.6 162 7-200 257-421 (434)
153 COG2271 UhpC Sugar phosphate p 99.1 4.7E-10 1E-14 114.0 12.1 160 10-200 269-431 (448)
154 PRK11010 ampG muropeptide tran 99.1 2.1E-09 4.6E-14 116.4 17.3 168 7-204 236-404 (491)
155 TIGR00879 SP MFS transporter, 99.1 1.5E-09 3.3E-14 116.0 15.7 162 17-201 307-468 (481)
156 PRK15075 citrate-proton sympor 99.1 2.2E-09 4.8E-14 114.5 16.7 146 6-182 251-398 (434)
157 KOG3626 Organic anion transpor 99.1 3.3E-09 7.1E-14 115.8 16.9 187 8-205 111-345 (735)
158 PF11700 ATG22: Vacuole efflux 99.1 4.4E-09 9.4E-14 112.7 17.2 169 7-201 295-466 (477)
159 COG2223 NarK Nitrate/nitrite t 99.0 2.1E-09 4.6E-14 109.4 13.1 167 8-202 233-400 (417)
160 PRK10406 alpha-ketoglutarate t 99.0 6.1E-09 1.3E-13 111.0 17.5 165 6-201 256-422 (432)
161 PRK10091 MFS transport protein 99.0 6.9E-09 1.5E-13 108.7 16.9 157 9-199 215-372 (382)
162 TIGR00712 glpT glycerol-3-phos 99.0 3.3E-09 7.2E-14 113.3 13.7 163 7-201 265-431 (438)
163 PF05631 DUF791: Protein of un 99.0 1E-07 2.2E-12 96.0 22.3 149 21-200 61-213 (354)
164 PRK10504 putative transporter; 99.0 8.8E-09 1.9E-13 111.0 15.9 144 7-181 275-418 (471)
165 TIGR00900 2A0121 H+ Antiporter 99.0 4.2E-09 9.2E-14 108.6 12.8 141 7-180 224-365 (365)
166 PRK15402 multidrug efflux syst 99.0 2.4E-08 5.2E-13 105.4 18.6 154 10-193 232-385 (406)
167 TIGR02332 HpaX 4-hydroxyphenyl 99.0 4.6E-09 1E-13 111.3 13.2 153 5-191 254-409 (412)
168 PRK12307 putative sialic acid 99.0 1.4E-08 2.9E-13 107.9 16.5 143 12-187 250-392 (426)
169 PRK11128 putative 3-phenylprop 99.0 1.7E-08 3.6E-13 105.8 16.8 154 7-197 219-373 (382)
170 PRK10077 xylE D-xylose transpo 98.9 2E-08 4.4E-13 108.2 17.4 153 18-200 295-454 (479)
171 TIGR02718 sider_RhtX_FptX side 98.9 1.8E-08 3.9E-13 105.8 16.2 163 6-197 221-385 (390)
172 TIGR01272 gluP glucose/galacto 98.9 1.2E-08 2.7E-13 103.6 14.2 144 11-191 158-303 (310)
173 PF05977 MFS_3: Transmembrane 98.9 2.2E-08 4.8E-13 108.5 15.9 155 12-200 237-391 (524)
174 TIGR00792 gph sugar (Glycoside 98.9 1.3E-08 2.8E-13 108.4 13.0 140 15-182 244-384 (437)
175 KOG3762 Predicted transporter 98.9 3.4E-07 7.3E-12 95.7 22.6 135 347-525 411-546 (618)
176 PRK14995 methyl viologen resis 98.9 1.6E-08 3.5E-13 109.8 13.6 140 7-177 273-412 (495)
177 TIGR00882 2A0105 oligosacchari 98.9 2.7E-08 5.9E-13 104.7 15.0 150 14-197 236-389 (396)
178 PLN00028 nitrate transmembrane 98.9 1.8E-08 3.9E-13 108.9 13.7 160 10-203 269-433 (476)
179 TIGR00881 2A0104 phosphoglycer 98.9 1.3E-08 2.8E-13 105.4 11.8 147 8-185 231-379 (379)
180 PRK10213 nepI ribonucleoside t 98.9 8.6E-08 1.9E-12 100.9 18.1 155 7-196 230-384 (394)
181 TIGR00711 efflux_EmrB drug res 98.9 1.7E-08 3.6E-13 109.0 12.7 143 6-178 268-410 (485)
182 TIGR00895 2A0115 benzoate tran 98.9 2E-08 4.4E-13 104.8 12.8 135 6-175 263-397 (398)
183 TIGR00896 CynX cyanate transpo 98.9 2.6E-08 5.6E-13 103.1 13.4 140 6-180 210-350 (355)
184 PRK10133 L-fucose transporter; 98.9 3.8E-08 8.3E-13 105.1 14.8 154 8-198 273-428 (438)
185 PRK10054 putative transporter; 98.8 3.7E-08 8E-13 103.8 14.4 153 14-200 227-381 (395)
186 TIGR00710 efflux_Bcr_CflA drug 98.8 9.9E-08 2.2E-12 99.4 17.1 150 8-188 221-371 (385)
187 PRK11902 ampG muropeptide tran 98.8 1.2E-07 2.6E-12 100.0 17.3 151 15-199 231-386 (402)
188 PRK11646 multidrug resistance 98.8 6E-08 1.3E-12 102.3 14.9 152 13-198 228-383 (400)
189 KOG3098 Uncharacterized conser 98.8 3.5E-06 7.7E-11 88.6 27.3 105 35-174 56-160 (461)
190 PRK08633 2-acyl-glycerophospho 98.8 7.4E-08 1.6E-12 115.3 16.7 149 9-191 248-398 (1146)
191 PRK11195 lysophospholipid tran 98.8 2E-07 4.3E-12 98.1 17.9 157 10-201 222-378 (393)
192 TIGR00894 2A0114euk Na(+)-depe 98.8 1E-07 2.2E-12 102.7 15.0 163 6-200 274-447 (465)
193 TIGR00887 2A0109 phosphate:H+ 98.8 1E-07 2.2E-12 103.7 15.1 161 7-198 302-484 (502)
194 PRK09848 glucuronide transport 98.8 5.3E-08 1.1E-12 104.3 12.6 149 7-181 242-391 (448)
195 COG2270 Permeases of the major 98.8 6.4E-08 1.4E-12 98.8 12.3 151 14-198 273-424 (438)
196 TIGR00880 2_A_01_02 Multidrug 98.8 3.4E-07 7.4E-12 80.1 15.5 134 349-526 5-138 (141)
197 PRK06814 acylglycerophosphoeth 98.7 9.7E-08 2.1E-12 114.2 15.2 170 7-191 239-410 (1140)
198 TIGR00901 2A0125 AmpG-related 98.7 1.2E-07 2.5E-12 98.2 11.9 134 5-162 221-355 (356)
199 KOG2325 Predicted transporter/ 98.7 1.4E-07 2.9E-12 99.4 12.1 130 16-175 57-188 (488)
200 KOG4686 Predicted sugar transp 98.7 2E-07 4.3E-12 89.8 11.8 141 15-191 286-430 (459)
201 PRK15034 nitrate/nitrite trans 98.7 6.6E-07 1.4E-11 95.0 17.0 169 9-201 268-452 (462)
202 COG2807 CynX Cyanate permease 98.6 7.2E-07 1.6E-11 89.4 15.2 155 3-191 218-373 (395)
203 PF07690 MFS_1: Major Facilita 98.6 1.5E-07 3.3E-12 96.5 10.6 132 7-169 220-352 (352)
204 KOG2504 Monocarboxylate transp 98.6 2.2E-07 4.7E-12 100.3 11.3 165 4-203 309-476 (509)
205 PRK11043 putative transporter; 98.6 1.9E-06 4.1E-11 90.8 18.3 145 8-183 218-362 (401)
206 KOG1330 Sugar transporter/spin 98.6 1.4E-08 3E-13 104.4 1.8 146 344-532 70-215 (493)
207 TIGR00898 2A0119 cation transp 98.6 8.6E-07 1.9E-11 96.4 14.4 133 34-200 360-492 (505)
208 PRK10473 multidrug efflux syst 98.5 2.1E-06 4.6E-11 90.1 16.7 138 14-190 224-361 (392)
209 PF13347 MFS_2: MFS/sugar tran 98.5 1E-06 2.3E-11 93.7 14.6 149 6-181 238-387 (428)
210 TIGR00903 2A0129 major facilit 98.5 1.6E-06 3.6E-11 90.3 15.6 156 3-199 202-361 (368)
211 PRK11102 bicyclomycin/multidru 98.5 3.5E-06 7.7E-11 87.7 17.1 133 10-173 211-344 (377)
212 PRK09669 putative symporter Ya 98.5 2.3E-06 4.9E-11 91.6 15.1 127 29-181 264-391 (444)
213 PF01770 Folate_carrier: Reduc 98.5 4.2E-05 9.2E-10 79.3 23.5 153 14-201 24-180 (412)
214 KOG3764 Vesicular amine transp 98.5 7.5E-07 1.6E-11 90.1 10.2 144 345-532 109-253 (464)
215 TIGR00886 2A0108 nitrite extru 98.5 2E-06 4.3E-11 89.1 13.8 112 344-487 39-150 (366)
216 PRK15403 multidrug efflux syst 98.4 2.5E-06 5.4E-11 90.4 14.2 137 348-528 57-193 (413)
217 PF06813 Nodulin-like: Nodulin 98.4 1.1E-05 2.4E-10 78.6 17.3 159 16-203 24-182 (250)
218 TIGR00885 fucP L-fucose:H+ sym 98.4 3.4E-06 7.4E-11 89.3 13.9 148 10-194 249-403 (410)
219 COG0477 ProP Permeases of the 98.4 8E-06 1.7E-10 80.6 14.8 140 21-192 29-174 (338)
220 PRK11652 emrD multidrug resist 98.4 1.3E-05 2.8E-10 84.2 16.9 138 15-184 229-366 (394)
221 KOG4332 Predicted sugar transp 98.4 7.1E-06 1.5E-10 78.6 13.1 150 19-198 62-215 (454)
222 PRK10429 melibiose:sodium symp 98.4 4.2E-06 9E-11 90.4 13.3 132 27-181 264-396 (473)
223 TIGR00924 yjdL_sub1_fam amino 98.3 9.6E-06 2.1E-10 87.6 15.1 168 13-204 292-469 (475)
224 PF03825 Nuc_H_symport: Nucleo 98.3 1.7E-05 3.6E-10 83.5 16.3 159 11-198 225-390 (400)
225 KOG2532 Permease of the major 98.3 6.6E-06 1.4E-10 87.9 12.8 165 3-200 268-444 (466)
226 KOG0569 Permease of the major 98.2 4.7E-05 1E-09 80.9 17.3 163 17-205 293-456 (485)
227 KOG0253 Synaptic vesicle trans 98.2 1.1E-05 2.4E-10 80.8 11.6 136 3-172 336-490 (528)
228 KOG2615 Permease of the major 98.2 4.2E-06 9.1E-11 84.3 8.5 112 344-488 70-181 (451)
229 PRK10207 dipeptide/tripeptide 98.2 5.3E-06 1.1E-10 89.8 10.2 106 351-487 59-167 (489)
230 PF01306 LacY_symp: LacY proto 98.2 1.5E-05 3.2E-10 83.0 13.0 155 15-203 242-400 (412)
231 PRK15462 dipeptide/tripeptide 98.2 8.7E-06 1.9E-10 87.4 10.5 109 348-487 51-162 (493)
232 TIGR00806 rfc RFC reduced fola 98.1 7E-05 1.5E-09 78.9 16.3 104 351-487 71-174 (511)
233 TIGR00805 oat sodium-independe 98.1 1.3E-05 2.8E-10 89.5 10.8 174 344-528 70-283 (633)
234 PRK11462 putative transporter; 98.1 5.7E-05 1.2E-09 81.2 15.3 128 28-181 262-390 (460)
235 PF03209 PUCC: PUCC protein; 98.1 0.0001 2.2E-09 75.7 15.5 163 7-199 222-394 (403)
236 PRK09584 tppB putative tripept 98.1 6.4E-05 1.4E-09 81.7 14.9 149 31-204 318-480 (500)
237 PTZ00207 hypothetical protein; 98.1 9.9E-05 2.1E-09 80.9 16.2 131 358-528 77-207 (591)
238 COG2211 MelB Na+/melibiose sym 98.1 4.5E-05 9.8E-10 80.4 12.8 139 17-181 260-399 (467)
239 TIGR00788 fbt folate/biopterin 98.0 4.8E-05 1E-09 82.0 11.3 134 22-180 281-415 (468)
240 TIGR01301 GPH_sucrose GPH fami 98.0 8.1E-05 1.8E-09 79.7 12.7 169 345-530 42-222 (477)
241 PF06609 TRI12: Fungal trichot 97.9 0.00011 2.3E-09 80.3 13.7 138 344-526 80-217 (599)
242 PF02487 CLN3: CLN3 protein; 97.9 0.0031 6.6E-08 65.6 23.1 129 32-200 62-192 (402)
243 TIGR00769 AAA ADP/ATP carrier 97.9 0.0089 1.9E-07 63.9 27.2 135 29-176 43-189 (472)
244 KOG0254 Predicted transporter 97.8 0.00012 2.7E-09 79.8 12.2 139 345-527 92-230 (513)
245 KOG0255 Synaptic vesicle trans 97.8 0.00013 2.8E-09 79.8 11.2 128 347-521 123-250 (521)
246 KOG2325 Predicted transporter/ 97.8 0.00025 5.5E-09 75.0 12.1 158 346-531 75-234 (488)
247 KOG3762 Predicted transporter 97.7 0.00011 2.3E-09 77.5 8.9 150 22-205 399-549 (618)
248 COG0738 FucP Fucose permease [ 97.7 0.00037 8.1E-09 71.2 12.3 137 13-186 256-392 (422)
249 PF12832 MFS_1_like: MFS_1 lik 97.7 0.00013 2.8E-09 57.5 6.4 57 12-70 19-75 (77)
250 KOG2533 Permease of the major 97.7 0.00036 7.8E-09 75.0 11.7 100 426-531 133-232 (495)
251 PF06963 FPN1: Ferroportin1 (F 97.5 0.068 1.5E-06 56.6 26.1 58 425-482 354-411 (432)
252 KOG3574 Acetyl-CoA transporter 97.4 0.048 1E-06 55.6 21.8 60 428-487 370-429 (510)
253 PF06779 DUF1228: Protein of u 97.4 0.0012 2.6E-08 52.6 8.5 73 4-81 6-78 (85)
254 PF05978 UNC-93: Ion channel r 97.4 0.0024 5.2E-08 57.6 11.4 109 32-175 40-148 (156)
255 PF00083 Sugar_tr: Sugar (and 97.3 3.7E-06 8.1E-11 89.9 -9.4 162 12-200 271-433 (451)
256 KOG0637 Sucrose transporter an 97.2 0.0011 2.4E-08 68.8 8.7 143 13-175 52-202 (498)
257 PF06813 Nodulin-like: Nodulin 96.8 0.02 4.3E-07 56.0 12.4 103 359-487 53-155 (250)
258 KOG0252 Inorganic phosphate tr 96.7 0.0034 7.3E-08 65.3 6.5 110 348-483 90-200 (538)
259 KOG2816 Predicted transporter 96.5 0.025 5.5E-07 60.4 11.7 134 352-532 72-205 (463)
260 PF03137 OATP: Organic Anion T 96.3 0.00069 1.5E-08 74.0 -1.6 178 344-532 40-256 (539)
261 PRK03612 spermidine synthase; 96.2 0.13 2.8E-06 56.1 15.6 155 16-201 37-196 (521)
262 KOG3626 Organic anion transpor 96.1 0.018 3.9E-07 63.9 8.4 150 383-532 162-349 (735)
263 KOG3810 Micronutrient transpor 95.8 0.03 6.5E-07 56.3 7.4 95 426-525 325-420 (433)
264 PF00854 PTR2: POT family; In 95.4 0.14 3.1E-06 53.2 11.4 125 384-532 2-129 (372)
265 PF03219 TLC: TLC ATP/ADP tran 95.3 2.7 5.9E-05 45.4 21.1 138 27-177 56-205 (491)
266 PF05978 UNC-93: Ion channel r 95.0 0.63 1.4E-05 42.0 13.0 94 360-486 55-148 (156)
267 COG3104 PTR2 Dipeptide/tripept 95.0 0.25 5.5E-06 52.4 11.8 152 29-204 324-488 (498)
268 KOG2563 Permease of the major 95.0 0.1 2.3E-06 54.5 8.8 156 23-208 295-455 (480)
269 PF03092 BT1: BT1 family; Int 94.8 0.4 8.7E-06 51.1 12.9 136 357-528 39-177 (433)
270 TIGR00926 2A1704 Peptide:H+ sy 94.7 0.57 1.2E-05 52.5 14.3 145 357-529 38-185 (654)
271 PF01770 Folate_carrier: Reduc 94.0 2.2 4.8E-05 44.7 15.9 93 362-487 61-153 (412)
272 PF05631 DUF791: Protein of un 93.8 2.1 4.6E-05 43.8 15.0 74 347-453 74-147 (354)
273 PF06963 FPN1: Ferroportin1 (F 93.4 1 2.2E-05 47.8 12.5 137 14-175 279-415 (432)
274 KOG3098 Uncharacterized conser 93.0 1.6 3.4E-05 46.5 13.0 121 34-171 280-407 (461)
275 KOG1479 Nucleoside transporter 93.0 13 0.00029 38.8 19.5 56 426-481 342-397 (406)
276 KOG0637 Sucrose transporter an 92.6 0.82 1.8E-05 48.1 9.9 129 345-486 70-202 (498)
277 KOG4332 Predicted sugar transp 91.2 1.8 4E-05 42.3 9.9 141 30-198 283-426 (454)
278 PF13000 Acatn: Acetyl-coenzym 91.2 25 0.00053 37.9 23.6 61 428-488 406-466 (544)
279 TIGR00939 2a57 Equilibrative N 90.7 26 0.00057 37.4 30.7 58 426-483 371-428 (437)
280 TIGR00769 AAA ADP/ATP carrier 90.5 8.1 0.00018 41.6 15.2 57 432-488 133-190 (472)
281 COG0477 ProP Permeases of the 89.9 4.4 9.6E-05 39.1 12.2 105 353-487 50-156 (338)
282 KOG3880 Predicted small molecu 88.8 13 0.00029 37.3 13.7 57 426-482 341-397 (409)
283 PF07672 MFS_Mycoplasma: Mycop 87.5 11 0.00024 36.9 12.3 58 150-207 4-66 (267)
284 PF03219 TLC: TLC ATP/ADP tran 84.8 34 0.00073 37.1 15.8 42 447-488 164-205 (491)
285 PF02487 CLN3: CLN3 protein; 83.4 7 0.00015 41.0 9.5 62 109-176 334-395 (402)
286 PF13000 Acatn: Acetyl-coenzym 81.0 19 0.0004 38.8 11.5 84 446-529 137-224 (544)
287 COG3202 ATP/ADP translocase [E 80.4 89 0.0019 33.6 28.2 135 27-177 59-209 (509)
288 PF07857 DUF1632: CEO family ( 73.3 37 0.0008 33.2 10.5 63 461-529 77-139 (254)
289 TIGR00939 2a57 Equilibrative N 72.0 82 0.0018 33.6 13.8 89 426-525 105-195 (437)
290 COG5336 Uncharacterized protei 70.6 15 0.00033 30.4 5.9 48 32-79 45-92 (116)
291 COG3202 ATP/ADP translocase [E 70.3 1.6E+02 0.0035 31.7 16.5 43 446-488 167-209 (509)
292 KOG1479 Nucleoside transporter 69.5 1.5E+02 0.0032 31.2 14.4 86 426-523 116-201 (406)
293 PRK03612 spermidine synthase; 68.1 1.5E+02 0.0033 32.4 15.2 52 435-487 118-169 (521)
294 KOG1237 H+/oligopeptide sympor 62.5 23 0.0005 39.2 7.5 153 356-531 87-250 (571)
295 PF09527 ATPase_gene1: Putativ 57.7 51 0.0011 23.7 6.2 39 36-74 7-45 (55)
296 PF12832 MFS_1_like: MFS_1 lik 57.3 6.1 0.00013 30.9 1.4 28 345-372 38-65 (77)
297 KOG3574 Acetyl-CoA transporter 53.5 86 0.0019 32.8 9.1 96 433-528 139-238 (510)
298 PF11947 DUF3464: Protein of u 46.8 77 0.0017 28.4 6.7 91 51-168 56-146 (153)
299 PF06912 DUF1275: Protein of u 46.7 2.5E+02 0.0054 26.3 12.9 36 157-193 167-202 (209)
300 KOG3097 Predicted membrane pro 45.8 1.1E+02 0.0023 31.4 8.2 74 40-142 69-142 (390)
301 COG5336 Uncharacterized protei 41.6 1.5E+02 0.0032 24.8 7.0 32 457-488 36-67 (116)
302 TIGR02230 ATPase_gene1 F0F1-AT 41.5 96 0.0021 25.6 6.0 35 35-69 48-82 (100)
303 TIGR01667 YCCS_YHJK integral m 28.9 4.6E+02 0.01 29.9 11.0 34 48-81 42-78 (701)
304 KOG4830 Predicted sugar transp 27.4 60 0.0013 31.9 3.1 48 14-63 38-94 (412)
305 TIGR01666 YCCS hypothetical me 27.3 5.2E+02 0.011 29.5 11.0 33 49-81 43-78 (704)
306 KOG4112 Signal peptidase subun 23.9 1.5E+02 0.0033 24.0 4.2 52 156-210 27-78 (101)
307 PF06645 SPC12: Microsomal sig 21.6 2.1E+02 0.0045 22.3 4.6 43 154-199 10-52 (76)
308 TIGR02230 ATPase_gene1 F0F1-AT 21.5 3.4E+02 0.0074 22.4 6.0 30 154-183 45-74 (100)
309 PF11283 DUF3084: Protein of u 21.4 3.1E+02 0.0066 21.6 5.3 46 359-404 17-66 (79)
310 KOG2601 Iron transporter [Inor 21.3 1.2E+02 0.0025 31.7 4.0 37 446-482 405-441 (503)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=395.30 Aligned_cols=519 Identities=44% Similarity=0.728 Sum_probs=461.1
Q ss_pred ccchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 008651 2 EGLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 2 ~~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~ 81 (558)
|.+||+++|++..++..|+...+|.+..++.-.++.|.....+.++++++++|.|+||.+++.++.++..+|..++..++
T Consensus 46 e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a 125 (571)
T KOG1237|consen 46 EVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSA 125 (571)
T ss_pred HHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 008651 82 HAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSL 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (558)
..|.+.++.| -.+-+.++|...+..+...++.++.+.++|.|+.+|+..++.+|++++.+++++..+.+.|+|+|+..
T Consensus 126 ~~~~l~p~~~--~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~ 203 (571)
T KOG1237|consen 126 MIPALLPFMC--KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQ 203 (571)
T ss_pred HhhhcCCccc--cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHH
Confidence 9999998877 22233556777777788999999999999999999999999999999888888888889999999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchh
Q 008651 162 TVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQL 241 (558)
Q Consensus 162 ~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (558)
++|..++.++..++.++.+|.+.|.++.+...+++++++.+.+.+++++|.++|+..+.++++.+.+++....+.++...
T Consensus 204 ~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~ 283 (571)
T KOG1237|consen 204 NGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEEL 283 (571)
T ss_pred HHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777664333
Q ss_pred hhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhc
Q 008651 242 HEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQ 321 (558)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 321 (558)
. +.........++++++++|++.+. .+.+. .+.....+|+.|+.+++++.|.+++.++++.....++.++.|
T Consensus 284 --~---~~~~~~~~~~~t~~f~~l~kaa~~-~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq 355 (571)
T KOG1237|consen 284 --Y---YDCTDSVAIEGTKPFRFLDKAALK-TSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQ 355 (571)
T ss_pred --c---ccccccccccCCcccchhhHhhcc-CCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 0 011111223346778899998876 33221 122245689999999999999999999999999999999999
Q ss_pred ccceeeeecccccccccc-cccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008651 322 LQTFCIQQSTTMDRNLFG-FKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVA 400 (558)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~ 400 (558)
+.+++..|...|+...++ +.+|++.+..+..+..++..|+.++...|+.||.++.+.+.+.+.++.+|+.+..+++...
T Consensus 356 ~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~a 435 (571)
T KOG1237|consen 356 MVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVA 435 (571)
T ss_pred hhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHH
Confidence 999999999999999987 9999999999999999999999999999999999988878899999999999999999999
Q ss_pred HHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 008651 401 AVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSS 480 (558)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~ 480 (558)
+.++.+|.+.+.. .....++++.+|++++++++|++|.+..+...++.++++|+++|+.+++++.+..++|+.++.
T Consensus 436 a~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss 511 (571)
T KOG1237|consen 436 GIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSS 511 (571)
T ss_pred HHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876654 222356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccC---CcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 008651 481 LVVEIVNKVSG---GWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYKEV 534 (558)
Q Consensus 481 ~l~~~i~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~ 534 (558)
.++.++...++ +|+..++++..+.+++||+++..+.++...+..+.+++++++.
T Consensus 512 ~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 512 VLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 99999887763 7887678999999999999999999999988888877766543
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=348.83 Aligned_cols=442 Identities=18% Similarity=0.293 Sum_probs=343.9
Q ss_pred CccchhhhhhhhHHHHHHHhhhhcC----CCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 008651 1 MEGLESMSFVANMVSLVTYFHGYMN----FSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAI 76 (558)
Q Consensus 1 ~~~~~~~~~y~~~~~l~~yl~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~ 76 (558)
+|+||||+|||+...+..|+..+++ ++++++.-+.+.|....++.+++|||++||++|+||++..|.+++++|.++
T Consensus 29 vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~ 108 (498)
T COG3104 29 VELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLV 108 (498)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHH
Q 008651 77 LAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNW 156 (558)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 156 (558)
++.++. .....++++.+++++|.|..+|++.++++|++|+++| ||..+|++
T Consensus 109 L~~~~~-------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~ 159 (498)
T COG3104 109 LAISSV-------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTL 159 (498)
T ss_pred Hhcccc-------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccE
Confidence 998630 1456899999999999999999999999999999997 59999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccC--CCCChhH------HHHHHHHHHHh
Q 008651 157 FLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNV--PKGSPII------RILQVFVAAIH 228 (558)
Q Consensus 157 ~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~ 228 (558)
+|++.|+|+.++|.+++++.+++||+..|.++++-+.++++.+.+++++...++ |+..+.. .....+...+.
T Consensus 160 fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (498)
T COG3104 160 FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILA 239 (498)
T ss_pred EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887765443 2222211 01111111111
Q ss_pred hCCCCCCCccchhhhhccccccccccccccccchhhhh-------HhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHH
Q 008651 229 NRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLD-------RAAITRTACDGRASTSINPGPWRLCTVTQVEETKI 301 (558)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (558)
- + +... ...+..+..- ..... + ....| .+.. ++++|
T Consensus 240 ~-----~-----~~~~------------l~~~~~~~~~~~~~i~~~~~~~-~----------~~~~~---~~~~-~er~r 282 (498)
T COG3104 240 A-----L-----LTLL------------LNQNTFSGVLLVISILIAIIYF-A----------EAFRS---PKVF-DERRR 282 (498)
T ss_pred H-----H-----HHHH------------HHHHHHHHHHHHHHHHHHHHHH-H----------HHhcc---CccH-HHHHH
Confidence 0 0 0000 0000000000 00000 0 00011 1122 67889
Q ss_pred HHhhHHHHHHHHHHHHHhhcccceeeeec-ccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCC
Q 008651 302 LLRMLPIIVSTLFMNTCLAQLQTFCIQQS-TTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGI 380 (558)
Q Consensus 302 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~ 380 (558)
++..+++++...+||++++|+++.+..+. ...+++..|+.+|+++++++|++..++++|+..+++.|++++. +.+
T Consensus 283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~p 358 (498)
T COG3104 283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQP 358 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCC
Confidence 99999999999999999999998655443 3445554568999999999999999999999999999988774 345
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhh
Q 008651 381 RQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGM 460 (558)
Q Consensus 381 ~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (558)
+...++..|+.+++.+++++........ + +++..|.+|+++.++++++||.+..|..++++++.+|+..
T Consensus 359 s~~~KFalGl~l~g~~fl~l~~~~~~~~---~--------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~ 427 (498)
T COG3104 359 STPIKFALGLILAGLGFLILLLAGIWFG---G--------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL 427 (498)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhc---C--------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence 7788999999999999999887632211 1 1335799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 461 KSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWY 529 (558)
Q Consensus 461 rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 529 (558)
++..|++|.+++..|+.++..+.+...... +.........+|+.++.+..+..+......+..
T Consensus 428 ~s~~ma~wfLt~a~~~~l~g~va~~~~~~~------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~ 490 (498)
T COG3104 428 KSFIMAMWFLTVAAGQTLGGQVAGLTAVTD------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL 490 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhceecccccccc------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999888877321100 112233445678888888888877766665443
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=1.5e-37 Score=334.23 Aligned_cols=447 Identities=15% Similarity=0.234 Sum_probs=321.2
Q ss_pred CccchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 008651 1 MEGLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQ 80 (558)
Q Consensus 1 ~~~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~ 80 (558)
.|++||++||++..++++|+++++|++.++++++.+.|....++.++++|+++||++||||+++++.+++.+++++++++
T Consensus 22 ~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~ 101 (489)
T PRK10207 22 VELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS 101 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999996799999999999999999999986
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
.. ....++++|+++++|.|..+|+..++++|++|++++ ||+++++++|++
T Consensus 102 ~~--------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~ 151 (489)
T PRK10207 102 LL--------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMS 151 (489)
T ss_pred cc--------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHH
Confidence 42 123466899999999999999999999999988762 368899999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhccccccc--CCCCChhHHHHHHH---------HHHHhh
Q 008651 161 LTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHN--VPKGSPIIRILQVF---------VAAIHN 229 (558)
Q Consensus 161 ~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~ 229 (558)
.|+|+++||.+++++.++.|||+.|+++.+..+++++.+...++.+++. +|++++. +....+ ......
T Consensus 152 ~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~~~~~~ 230 (489)
T PRK10207 152 INIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMIFVCAW 230 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776666666665555444332 2222222 111100 000000
Q ss_pred CCCCCCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHH
Q 008651 230 RNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPII 309 (558)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (558)
... ........... ....-..... +.+...++ .++++.+..+.++
T Consensus 231 ~~~-~~~~~~~~~~~-----------------~~~i~~~~f~----------------~~~~~~~~-~~r~r~~~~~~l~ 275 (489)
T PRK10207 231 LMH-NVEVANLVLIV-----------------LSIVVTIIFF----------------REAFKLDK-TGRNKMFVAFVLM 275 (489)
T ss_pred HHh-hhhHHHHHHHH-----------------HHHHHHHHHH----------------HHHhcCCH-HHHHHHHHHHHHH
Confidence 000 00000000000 0000000000 00000111 3345555566666
Q ss_pred HHHHHHHHHhhcccceeeeecc-cccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHH
Q 008651 310 VSTLFMNTCLAQLQTFCIQQST-TMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGV 388 (558)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~ 388 (558)
....++|..+.|..+....+.. +.+....|+.+++++++.+|++..++.+|+.+++++|+++|. ..+++..++.+
T Consensus 276 ~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~~~~~~~k~~~ 351 (489)
T PRK10207 276 LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----KDLSMPMKFTL 351 (489)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----CCCCcHHHHHH
Confidence 6788889999988664433332 345556677888888999999999999999999999998884 24578889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHH
Q 008651 389 GLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAIS 468 (558)
Q Consensus 389 g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~ 468 (558)
|+++++++++.++....... .. ....+.+|+++.+++.++||.+..|..++++.+.+|++++|.++|++
T Consensus 352 G~~l~~~~~~~~~~~~~~~~---~~--------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~ 420 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFA---DA--------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW 420 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH
Confidence 99999999876643321100 00 11357788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcccCCCCC-cchhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 008651 469 WCSIAFGYFLSSLVVEIVNKVSGGWLASNNLN-RDKLNYFYWLLAGISVLNFGFYLACASWYRY 531 (558)
Q Consensus 469 ~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 531 (558)
++.+++|+.++..+........+.. |+.. ...+..+|..+++++++.+++++.+.+..++
T Consensus 421 ~l~~~ig~~lg~~l~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~ 481 (489)
T PRK10207 421 FLTQAAAFLLGGYVATFTAVPDNIT---DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR 481 (489)
T ss_pred HHHHHHHHHHHHHHHHHhccccccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887653111000 1111 1235567888888888888877776654433
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=1.2e-35 Score=319.14 Aligned_cols=436 Identities=16% Similarity=0.213 Sum_probs=319.0
Q ss_pred ccchhhhhhhhHHHHHHHhhhh--cCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Q 008651 2 EGLESMSFVANMVSLVTYFHGY--MNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAI 79 (558)
Q Consensus 2 ~~~~~~~~y~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~ 79 (558)
|++||++||++..+++.|++++ +|+|..+++++.+.+.++.+++++++|+++||++||||+++++.++..++.+++++
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999887 99999999999999999999999999999999559999999999999999998887
Q ss_pred hhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHH
Q 008651 80 QAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLF 159 (558)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~ 159 (558)
+. +.+.++++|++.|+|.|...|+..++++|++|+++++ +|+++++++|+
T Consensus 99 ~~---------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~ 148 (475)
T TIGR00924 99 SI---------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYM 148 (475)
T ss_pred cc---------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHH
Confidence 53 4567888999999999999999999999999876521 48899999999
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhH----HH-HH------HHHHHHh
Q 008651 160 SLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPII----RI-LQ------VFVAAIH 228 (558)
Q Consensus 160 ~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~------~~~~~~~ 228 (558)
..|+|.++||.+++++.++.||++.|+++++..+++.+.++..++.+++.++++++.. +. .+ .+...++
T Consensus 149 ~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFF 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887776666666555544433322221110 00 00 0000000
Q ss_pred hC-CCCCCCccchhhhhccccccccccccccccch-hhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhH
Q 008651 229 NR-NLPKPEMADQLHEIHDREAGLDTEILKRTDQF-RFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRML 306 (558)
Q Consensus 229 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (558)
.. ........ ....+.... .+....... . .+ ..++ .++++....+
T Consensus 229 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~------------~~----~~~~-~~~~~~~~~l 275 (475)
T TIGR00924 229 CAWLMHHVVIA---------------NILLMTVTLAVIIFFFRLA-F------------KP----RLDA-VARNKMYAYI 275 (475)
T ss_pred HHHHHhccHHH---------------HHHHHHHHHHHHHHHHHHH-H------------hc----cCCH-HHHhHHHHHH
Confidence 00 00000000 000000000 000000000 0 00 0011 2334445577
Q ss_pred HHHHHHHHHHHHhhccccee-eeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHH
Q 008651 307 PIIVSTLFMNTCLAQLQTFC-IQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQR 385 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~ 385 (558)
.+++...++|+.+.|+.+.+ .++..+++.+++++.+|.+++..+|++..++..|+.++++.++.||. .+++...+
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k 351 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLK 351 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHH
Confidence 78888889999999988754 33344567777778899999999999999999999988887777752 23466778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHH
Q 008651 386 IGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLST 465 (558)
Q Consensus 386 ~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 465 (558)
+.+|+++.+++++.++..... .. ...+.+++|+++.+++.++||.+..|..++++.+.+|++.||+++
T Consensus 352 ~~~G~~l~~~~~~~~~~~~~~----~~--------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~ 419 (475)
T TIGR00924 352 FTLGMLFCGASFLTFAASIWF----AD--------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML 419 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----cC--------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999888765211 11 122468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 466 AISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASW 528 (558)
Q Consensus 466 gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 528 (558)
|++.+...+|+.+++.+.....+ . .++..+|...+.+.++.++++++..+.
T Consensus 420 g~~~l~~~~g~~l~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 420 GMWFLAQAMGSLLGGYLATFGAV---------P---QGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------c---cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776531 1 124445667777777777766665544
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=3.8e-35 Score=311.53 Aligned_cols=443 Identities=15% Similarity=0.203 Sum_probs=312.8
Q ss_pred CccchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 008651 1 MEGLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQ 80 (558)
Q Consensus 1 ~~~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~ 80 (558)
.|++||++||++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||+++++.++..++.++++..
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999993399999999999999998877653
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
.. +...+.++..+..+|.|..+++.+++++|++|++++ +|+++++++|+.
T Consensus 97 ~~--------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~ 146 (493)
T PRK15462 97 EI--------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAA 146 (493)
T ss_pred hc--------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHH
Confidence 21 122355566677788899999999999999998743 499999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhccccccc---CCCCChhHHHHHHHHHHHhhCCCCCCCc
Q 008651 161 LTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHN---VPKGSPIIRILQVFVAAIHNRNLPKPEM 237 (558)
Q Consensus 161 ~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (558)
.|+|+.++|.+++++.+++||++.|.++++..+++++.++..++++.+. +|+..+.+...........--....+
T Consensus 147 ~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 224 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP-- 224 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999998887777777776655554332 11111100000000000000000000
Q ss_pred cchhhhhccccccccccccccccchhhh-hHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHH
Q 008651 238 ADQLHEIHDREAGLDTEILKRTDQFRFL-DRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMN 316 (558)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (558)
.+.. ....+ +..... -..... . . ....+........++++|+...+.++....+||
T Consensus 225 --~~~~----------~~~~~-~~~~~~~~~~~~~-~-~--------~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw 281 (493)
T PRK15462 225 --ALIT----------VLFWK-EWSVYALIVATII-G-L--------GVLAKIYRKAENQKQRKELGLIVTLTFFSMLFW 281 (493)
T ss_pred --HHHH----------HHHHH-HHHHHHHHHHHHH-H-H--------HHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 0000 00000 000000 000000 0 0 000000000011267888889999999999999
Q ss_pred HHhhcccce-eeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHH
Q 008651 317 TCLAQLQTF-CIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAV 395 (558)
Q Consensus 317 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i 395 (558)
+.++|.++. ......+.|++++|+.+|+++++.+|++..++.+|+..+++.++.+|. +.++...++.+|++++++
T Consensus 282 ~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~g~~~~g~ 357 (493)
T PRK15462 282 AFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFALGLGLMSA 357 (493)
T ss_pred HHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHHH
Confidence 999999873 233335678888899999999999999999999999999998886541 235778899999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHH-HH
Q 008651 396 SMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSI-AF 474 (558)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~-~l 474 (558)
+++++...... .+.+ ...+.+|++..++++++||....|...+.+.+.+|++.+|++||++.+.. .+
T Consensus 358 ~f~~l~~~~~~----~~~~--------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~ 425 (493)
T PRK15462 358 GFCILTLSARW----SAMY--------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI 425 (493)
T ss_pred HHHHHHHHHhh----cCCC--------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99888765321 1111 13688999999999999999999999999999999999999999998744 68
Q ss_pred HHHHHHHHHHHhhhccCCcccCCC----CCcchhHHHHHHHHHHHHHH
Q 008651 475 GYFLSSLVVEIVNKVSGGWLASNN----LNRDKLNYFYWLLAGISVLN 518 (558)
Q Consensus 475 g~~lg~~l~~~i~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~v~ 518 (558)
|+.++..+.+.....+ .. .+ -....+..+|..++.+.++.
T Consensus 426 ~~~~~g~~~~~~~~~~---~~-~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 426 ANYLAGVIADQTSQAS---FD-ASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHhcccc---CC-ccccccchhhhHHHHHHHHHHHHHHH
Confidence 8888887777653211 00 00 01123455677777766655
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=2.1e-34 Score=311.30 Aligned_cols=443 Identities=16% Similarity=0.248 Sum_probs=315.5
Q ss_pred ccchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 008651 2 EGLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 2 ~~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~ 81 (558)
|++||++||++..+++.|+++++|++.++++++.+.+....+..++++|+++||++|||++++++.+++.++..+++++.
T Consensus 30 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~ 109 (500)
T PRK09584 30 ELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999998888888899999999944999999999999999998888753
Q ss_pred hccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 008651 82 HAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSL 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (558)
. ....++++|+++|+|.|...++..++++|++|++++ +|+++++++|++.
T Consensus 110 ~--------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~ 159 (500)
T PRK09584 110 H--------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSI 159 (500)
T ss_pred c--------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHH
Confidence 1 345677889999999999999999999999987652 3667899999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhccccccc--CCCCChhHHH--H----HHH-HHHHhhCCC
Q 008651 162 TVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHN--VPKGSPIIRI--L----QVF-VAAIHNRNL 232 (558)
Q Consensus 162 ~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~~~-~~~~~~~~~ 232 (558)
|+|+++||.+++++.+++|||+.|+++++..+++++.++..++.++++ +|++++.... . ... .........
T Consensus 160 ~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (500)
T PRK09584 160 NIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLL 239 (500)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877666665555444333322 2222221110 0 000 000000000
Q ss_pred CCCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHH
Q 008651 233 PKPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVST 312 (558)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (558)
..++..+.... . ............. +..++ .++++.+..+..++..
T Consensus 240 ~~~~~~~~~~~------------~--~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~~ 285 (500)
T PRK09584 240 HNQEIARMALG------------V--VALGIVVIFGKEA-------------------FAMKG-AARRKMIVAFILMLEA 285 (500)
T ss_pred hcchHHHHHHH------------H--HHHHHHHHHHHHH-------------------hhcCH-HHHHHHHHHHHHHHHH
Confidence 00000000000 0 0000000000000 01112 4455565666677778
Q ss_pred HHHHHHhhcccceeeeecc-cccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHH
Q 008651 313 LFMNTCLAQLQTFCIQQST-TMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLV 391 (558)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~ 391 (558)
.++|..+.|+++.+..+.. +.+.+..|+.++.++++.+|++..++.+|+.++++.|+++| .+..+++.+|++
T Consensus 286 i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~ 358 (500)
T PRK09584 286 IIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMV 358 (500)
T ss_pred HHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHH
Confidence 8899999999887655432 34555667788889999999999999999999988877776 256789999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHH
Q 008651 392 LSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCS 471 (558)
Q Consensus 392 l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~ 471 (558)
+++++++........ ..+ ....+.+|+++.+++.++||++..|...+++.+.+|++.||+++|++.+.
T Consensus 359 l~~l~f~~l~~~~~~----~~~--------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 359 LCSGAFLVLPLGAKF----AND--------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred HHHHHHHHHHHHHHh----cCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999998765421 111 12467789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCcccCCCCC-cchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 472 IAFGYFLSSLVVEIVNKVSGGWLASNNLN-RDKLNYFYWLLAGISVLNFGFYLACASWYR 530 (558)
Q Consensus 472 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 530 (558)
..+|+.++..+.+.+.... -.. +... .+.+..+|..+++++++.+++.+...+..+
T Consensus 427 ~a~g~~~~g~~~~~~~~~~--~~~-~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 427 TAGAALIAGYVANLMAVPD--NVT-DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred HHHHHHHHHHHHHHhcccc--ccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9899888888876442100 000 1111 122456677778777766666665554433
No 7
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.97 E-value=1.7e-27 Score=261.30 Aligned_cols=335 Identities=29% Similarity=0.494 Sum_probs=270.5
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
|+|||+...+.+|+.+.+|++++++..+.+.|....++.++++|+++|+++||+|+++++.++..+|.+++++++..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999886431110
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
........+++.++.++|.|+++|+..++.+|+++++++ .+|.++|+++|++.|+|+.
T Consensus 81 -------------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSl 138 (654)
T TIGR00926 81 -------------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSL 138 (654)
T ss_pred -------------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHH
Confidence 012345577899999999999999999999999986542 2489999999999999999
Q ss_pred HHHHHHHHhccc-------cchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccc
Q 008651 167 IGVTFIVWISTN-------QGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMAD 239 (558)
Q Consensus 167 ~g~~~~~~l~~~-------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (558)
+++++.+++.+. .+|..+|.++++..+++++++...++++++++|.+++.....++++...+++....++.
T Consensus 139 is~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-- 216 (654)
T TIGR00926 139 ISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-- 216 (654)
T ss_pred HHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc--
Confidence 999999999744 36999999999999999999888888887777777777776777776666543211110
Q ss_pred hhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHh
Q 008651 240 QLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCL 319 (558)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (558)
...+++|.+... ...+.+++.+++++++.+++...++|..+
T Consensus 217 --------------------~~~~~ld~a~~~-------------------~~~~~V~evkrll~il~l~i~~~ifw~~~ 257 (654)
T TIGR00926 217 --------------------WPLHWLDYAKDK-------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALF 257 (654)
T ss_pred --------------------cchhHHHHhccc-------------------cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001233333221 11234578899999999999999999999
Q ss_pred hcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 008651 320 AQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAV 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~ 399 (558)
.|..+.+..|...++.+++++.+|++++..++++..++..|+.++...+..+|.. .+.+++.++.+|++++++++++
T Consensus 258 ~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~v 334 (654)
T TIGR00926 258 DQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFV 334 (654)
T ss_pred hcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHH
Confidence 9999988888888887777888899999999999999999999855554444431 2367899999999999999998
Q ss_pred HHHHHHHH
Q 008651 400 AAVVETKR 407 (558)
Q Consensus 400 ~~~~~~~~ 407 (558)
....+.++
T Consensus 335 a~~ve~~~ 342 (654)
T TIGR00926 335 AALVQLKV 342 (654)
T ss_pred HHHHHHHH
Confidence 88776544
No 8
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.95 E-value=7.4e-25 Score=230.66 Aligned_cols=361 Identities=11% Similarity=0.035 Sum_probs=241.8
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
.++.......++.|+++++|.|+.+.|++.+.+.++..+++++.|+++|| +||||+++.+.++..++.+.+.++...+.
T Consensus 28 ~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T PRK05122 28 YLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAA 106 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34445556778889999999999999999999999999999999999999 79999999999998888777666532110
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
. ...+...+++.|+++|+|.+...+...+++.|.+|+++ |++++++.....++|.
T Consensus 107 ~-------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~ 161 (399)
T PRK05122 107 W-------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGAL 161 (399)
T ss_pred c-------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHH
Confidence 0 01146678999999999999999999999999998886 9999999999999999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhc
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIH 245 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (558)
++|+.+++++.+..||++.+++..+..++..+.. ++ .++.++++++..
T Consensus 162 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~---------------------------- 209 (399)
T PRK05122 162 AIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERL---------------------------- 209 (399)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccch----------------------------
Confidence 9999999999999999999887665543332221 11 111000000000
Q ss_pred cccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhh-HHHHHHHHHHHHHhhcccc
Q 008651 246 DREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRM-LPIIVSTLFMNTCLAQLQT 324 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ 324 (558)
++. +..++.... ....+....+.......+.
T Consensus 210 -----------------~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T PRK05122 210 -----------------PFR-------------------------------RVLGRVWPYGMGLALASIGFGTIATFITL 241 (399)
T ss_pred -----------------hHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000000 0001111111111111111
Q ss_pred eeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008651 325 FCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVE 404 (558)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~ 404 (558)
++ .+ .+.+ ..........+..+++.++.+++.||+++| +.+..+..+++++++.....
T Consensus 242 ~~-~~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~- 299 (399)
T PRK05122 242 YY-AA-RGWD--------GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLLLWLA- 299 (399)
T ss_pred HH-HH-cccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh-
Confidence 11 11 0110 111222233455566677788888887766 44666677777766655543
Q ss_pred HHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 405 TKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVE 484 (558)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~ 484 (558)
.+.++.++..++.|++.+...|.......+..|++.||+++|+.+....+|..+++.+.+
T Consensus 300 --------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 359 (399)
T PRK05122 300 --------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG 359 (399)
T ss_pred --------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134455566788999988888887778889999999999999999999999999998888
Q ss_pred HhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 485 IVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 485 ~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
.+.+ . .++...|+..+++++++.+..+++.
T Consensus 360 ~l~~---------~---~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 360 LVAS---------W---FGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHH---------H---cCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8762 1 1244566777777777766655543
No 9
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.94 E-value=8e-25 Score=243.17 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=133.5
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
...+.+++.+++|++..+.+++.+++.++..++++++|+++|| +|||+++++++++..++.++++++.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3445567788999999999999999999999999999999999 7999999999999999998888764
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
+++.++++|++.|+|.|+..+...++++|.+|++. |++.+++......+|.++++.++
T Consensus 254 ----------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 254 ----------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999886 99999999999999999998877
Q ss_pred HHhccc-------------cchhhHHHHHHHHHHHHHHHHHH
Q 008651 173 VWISTN-------------QGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 173 ~~l~~~-------------~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
.++... .+||+.|++.++..++.++..++
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 36899988877766555544433
No 10
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.94 E-value=2.5e-25 Score=239.94 Aligned_cols=407 Identities=12% Similarity=0.088 Sum_probs=238.4
Q ss_pred cCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcCcC
Q 008651 24 MNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA-HQLRPKPCVGVAPNLVNQC 102 (558)
Q Consensus 24 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (558)
++.++.+.+++.+++.++..++++++|+++|| +||||+++++.+++.++.+.++++... ....
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~--------------- 113 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIG--------------- 113 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcccccccc---------------
Confidence 38899999999999999999999999999999 799999999999999888887764210 0000
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc------
Q 008651 103 DDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS------ 176 (558)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~------ 176 (558)
..+...+..++++|+++|++.|+..+...++++|++|+++ |++++++......+|.++++.++..+.
T Consensus 114 -~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 186 (479)
T PRK10077 114 -PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186 (479)
T ss_pred -ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 0011246678899999999999999999999999999887 999999999999999999887766543
Q ss_pred --cccchhhHHHHHHHHHHHHHHHHHHhccccccc-CCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccc
Q 008651 177 --TNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHN-VPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDT 253 (558)
Q Consensus 177 --~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (558)
+.+|||+.|++.++..++..+..++. ++.++. ..+++ .++..+ ..++.. .+...
T Consensus 187 ~~~~~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~-~~~~~~----~~~~~~--~~~~~--------------- 243 (479)
T PRK10077 187 WLNTDGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGK-QEQAEG----ILRKIM--GNTLA--------------- 243 (479)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCC-HHHHHH----HHHHHc--CChhH---------------
Confidence 45799999998877655554433322 221100 00000 000000 000000 00000
Q ss_pred cccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccccee--eeecc
Q 008651 254 EILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFC--IQQST 331 (558)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 331 (558)
+....+..... +. ++ +..+..+...............+.+...++ .+...
T Consensus 244 -------~~~~~~~~~~~-~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 295 (479)
T PRK10077 244 -------TQALQEIKHSL-DH-------------------GR-KTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAP 295 (479)
T ss_pred -------HHHHHHHHHHH-HH-------------------hh-hhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 00000000000 00 00 000000000000000000001111111000 00000
Q ss_pred cccccccccccC-CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 332 TMDRNLFGFKVP-GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSV 410 (558)
Q Consensus 332 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~ 410 (558)
...... +.... .........+..+++.++.+++.||++|| +.+..+.++++++++.+.....
T Consensus 296 ~i~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----------~~~i~~~~~~~v~~~~l~~~~~----- 358 (479)
T PRK10077 296 EIFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFY----- 358 (479)
T ss_pred HHHHHc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----------HHHHHhHHHHHHHHHHHHHHHh-----
Confidence 000000 00100 11222334455677788889999999888 5577888888888777654320
Q ss_pred hhcccccCCCCCccchhHHHHHHHHHHHHHHHH-HhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 411 AVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMF-TLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKV 489 (558)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~ 489 (558)
......+.....++.+.+.+. ..|..+.++.|..|++.|++++|+.+..+.+++.+++.+.|.+.+
T Consensus 359 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~- 425 (479)
T PRK10077 359 ------------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK- 425 (479)
T ss_pred ------------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-
Confidence 011222333344444454443 347778899999999999999999999999999999888876642
Q ss_pred cCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcc
Q 008651 490 SGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYKEVEIKQV 539 (558)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 539 (558)
.+|.. +.. +....|++.+++++++++..+++.++.|+++.|+.++
T Consensus 426 -~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 426 -NSWLV-AHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470 (479)
T ss_pred -ccchh-hhc---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 12322 211 1233456677777777777777777777766655443
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=99.94 E-value=1.1e-24 Score=228.86 Aligned_cols=348 Identities=12% Similarity=0.071 Sum_probs=234.7
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
+.+.+++|.|+.+.+++.+.+.+++.+++++.|+++|| +||||++..+.++..++.++++++.
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 95 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAW---------------- 95 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 56788999999999999999999999999999999999 7999999999999999999988864
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST 177 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 177 (558)
+++.+++.|+++|++.+...+...+++.|++|+++ |+++++++..+.++|.++||.+++.+.+
T Consensus 96 -----------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~ 158 (390)
T PRK03545 96 -----------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQ 158 (390)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 67899999999999999999999999999999876 9999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccc
Q 008651 178 NQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILK 257 (558)
Q Consensus 178 ~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 257 (558)
+.|||+.|++.++..++..+......|+.+++ ++++.++
T Consensus 159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~--------------------------------------- 197 (390)
T PRK03545 159 YLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS--------------------------------------- 197 (390)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH---------------------------------------
Confidence 99999999998876555444333322211100 0000000
Q ss_pred cccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccccc
Q 008651 258 RTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNL 337 (558)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
..... ++++.....+..+......+......+.+. .+..+++..
T Consensus 198 ---------~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~s~~- 241 (390)
T PRK03545 198 ---------LPLLF-------------------------RRPALVSLYLLTVVVVTAHFTAYSYIEPFV-QQVAGLSEN- 241 (390)
T ss_pred ---------HHHHH-------------------------hCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcc-
Confidence 00000 011111111111111111111111111111 111111111
Q ss_pred cccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 008651 338 FGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMV 417 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~ 417 (558)
..+.+.....+..+++..+.+++.||.++| .+..+..+..++........
T Consensus 242 -----~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l~~~~------------- 291 (390)
T PRK03545 242 -----FATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLLLPAA------------- 291 (390)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHHHHh-------------
Confidence 112233334455667777778887776654 24445555555444332221
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCC
Q 008651 418 DSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASN 497 (558)
Q Consensus 418 ~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~ 497 (558)
.+.+.+++..++.|++.+...+.....+.+..| +.+++++|+.+....+|..+|+.+.|.+. |
T Consensus 292 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~---------~ 354 (390)
T PRK03545 292 -------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS---------L 354 (390)
T ss_pred -------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h
Confidence 244455567778888887777777788888777 57899999999999999999999999886 2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 498 NLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 498 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
.. ++...|+..+.+.+++.+..+...
T Consensus 355 ~~---g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 355 HL---GLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred cc---ChhHHHHHHHHHHHHHHHHHHHHc
Confidence 22 234556777777777777666554
No 12
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.94 E-value=4.9e-25 Score=238.74 Aligned_cols=381 Identities=13% Similarity=-0.005 Sum_probs=238.7
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
....+.+.+++|.+..+.+|+.+.|.++..++.+++|+++|| +|||++++.+.+++.++.++++++.
T Consensus 26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~------------ 92 (495)
T PRK14995 26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSP------------ 92 (495)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcC------------
Confidence 334456678999999999999999999999999999999999 7999999999999999999999874
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+.+.++++|+++|+|.++..+.....+.+.+++++ +|+++++++....++|..+||.+++
T Consensus 93 ---------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 93 ---------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999988888888775433 3999999999999999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHH------HHHHHHhhCCCCCCCccchhhhhccc
Q 008651 174 WISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQ------VFVAAIHNRNLPKPEMADQLHEIHDR 247 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (558)
++.++.|||+.|++..+..++..++.....|+.+.++.++........ .+...+++...............
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 229 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTL--- 229 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHH---
Confidence 999999999999998877666555444443332221111111111000 01111111100000000000000
Q ss_pred cccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceee
Q 008651 248 EAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCI 327 (558)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (558)
--....-......+. +... ...+++.+ +++......+..+.....+... ..+.+.+.
T Consensus 230 ---------~~~~~~l~~f~~~e~-~~~~-------p~~~~~lf-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 286 (495)
T PRK14995 230 ---------LTGALLLGLFIRTQL-AASR-------PMIDMRLF-----THRIILSGVVMAMTAMITLVGF-ELLMAQEL 286 (495)
T ss_pred ---------HHHHHHHHHHHHHHh-cCCC-------CCcCHHHh-----CCcccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 000000000000000 0000 00111100 1111111111111111111111 11111111
Q ss_pred eecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 328 QQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKR 407 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~ 407 (558)
+...+.+ ....+.......+...++.++.+++.||+++| +.+..|+++.+++++.+....
T Consensus 287 q~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~~~~~l~~~~--- 346 (495)
T PRK14995 287 QFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSALSFYGLAMTD--- 346 (495)
T ss_pred HHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHhc---
Confidence 1111111 11123334444566778888999999988876 446778877777766554331
Q ss_pred hhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 408 KSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
...+.+......++.|+|.+...+.....+.+.+|++.++.++++.++.+.+|+.+|+.+.+.+.
T Consensus 347 ---------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 347 ---------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred ---------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233445567788999999988888899999999999999999999999999999999998886
Q ss_pred h
Q 008651 488 K 488 (558)
Q Consensus 488 ~ 488 (558)
+
T Consensus 412 ~ 412 (495)
T PRK14995 412 S 412 (495)
T ss_pred H
Confidence 4
No 13
>PRK12382 putative transporter; Provisional
Probab=99.94 E-value=2.1e-24 Score=226.75 Aligned_cols=360 Identities=10% Similarity=0.019 Sum_probs=235.1
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
++.....+.+|.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||+++.+.++..++.+........+..
T Consensus 29 ~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (392)
T PRK12382 29 MTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVS 107 (392)
T ss_pred HHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3444445667778999999999999999999999999999999999999 799999999988777665543332111100
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
...+++.++++|+++|+|.+...+...+++.|.+|+++ |++++++...+.++|..
T Consensus 108 -------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~ 162 (392)
T PRK12382 108 -------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALA 162 (392)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHH
Confidence 01267889999999999999999999999999999876 99999999999999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcc
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHD 246 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (558)
+||.+++++.+.+||++.+.+..+..++.... .+ +.++.+++++. .+
T Consensus 163 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~------------------~~----------- 209 (392)
T PRK12382 163 AGAPLGLLLHSHFGFAALALTTMVLPLLAWAF---NG-TVRKVPAHAGE------------------RP----------- 209 (392)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---HH-hccCCCCCccc------------------Cc-----------
Confidence 99999999999899998877654433222221 11 11111100000 00
Q ss_pred ccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccccee
Q 008651 247 REAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFC 326 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 326 (558)
+..+..+. ...... .. ......+.......+.+
T Consensus 210 ----------------~~~~~~~~--------------------------~~~~~~-~~---~l~~~~~~~~~~~~~~~- 242 (392)
T PRK12382 210 ----------------SLWSVVGL--------------------------IWKPGL-GL---ALQGVGFAVIGTFVSLY- 242 (392)
T ss_pred ----------------hHHHHHHH--------------------------HHHhHH-HH---HHHHHHHhHHHHHHHHH-
Confidence 00000000 000000 00 01111111111111111
Q ss_pred eeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 327 IQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETK 406 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~ 406 (558)
..+. +.+ ..........+..+++.++.+++.||+++| +.+..+..+.+++++.....+
T Consensus 243 ~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~-- 300 (392)
T PRK12382 243 FASK-GWA--------MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLAP-- 300 (392)
T ss_pred HHhc-CCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHcc--
Confidence 1110 100 011112223444566777888888888776 335666777777666554321
Q ss_pred HhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008651 407 RKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIV 486 (558)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i 486 (558)
+.++..+..++.+++.+...|.......+..|++.||+++|+.++...+|+.+++.+.+.+
T Consensus 301 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l 361 (392)
T PRK12382 301 -------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGML 361 (392)
T ss_pred -------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677888888888888888888999999999999999999999999999999988
Q ss_pred hhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008651 487 NKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
.+. .++...|++.+++.+++.+..++.
T Consensus 362 ~~~------------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 362 ATS------------FGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHH------------hCchHHHHHHHHHHHHHHHHHHhh
Confidence 631 124455677777777776665544
No 14
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.94 E-value=2.3e-24 Score=227.13 Aligned_cols=340 Identities=14% Similarity=0.137 Sum_probs=227.4
Q ss_pred cchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008651 3 GLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~ 82 (558)
++-.++++.+.++++.|+++++|+|..+.|++.+.+.+...+..+++|+++|| +|||+++..+.++..++.+.+....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~- 97 (400)
T PRK11646 20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAH- 97 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhc-
Confidence 35567888899999999999999999999999999999999999999999999 7999999999999999998887753
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
+++.+++.|+++|++.+...|...+++.|.+|+++ |++++++.+...+
T Consensus 98 --------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~ 145 (400)
T PRK11646 98 --------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDS 145 (400)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 57788999999999999999999999999999876 9999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhh
Q 008651 163 VGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLH 242 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (558)
+|..+||.+++++. .+||++.|++.++..++..++..+..++.+. ++..++..
T Consensus 146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~------------------------- 198 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR------------------------- 198 (400)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH-------------------------
Confidence 99999999999998 6899999998877655554433332221100 00000000
Q ss_pred hhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcc
Q 008651 243 EIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQL 322 (558)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 322 (558)
+ + ..... ++++.....+............ ...
T Consensus 199 ~-------------------~---~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~ 230 (400)
T PRK11646 199 E-------------------G---MTRVL-------------------------RDKRFVTYVLTLTGYYMLAVQV-MLM 230 (400)
T ss_pred H-------------------H---HHHHH-------------------------cCchHHHHHHHHHHHHHHHHHH-HHh
Confidence 0 0 00000 1111111111111111111101 111
Q ss_pred cceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008651 323 QTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAV 402 (558)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~ 402 (558)
.+.+..+..+ + ....+.+...+.+.........+++.|+ |. +..+.+..+..+.+++++.+..
T Consensus 231 ~p~~~~~~~~-~------~~~~g~l~~~~~~~~~~~~~~~~~~~~~---r~-------~~~~~~~~~~~~~~~~~~~l~~ 293 (400)
T PRK11646 231 LPIMVNDIAG-S------PSAVKWMYAIEACLSLTLLYPIARWSEK---RF-------RLEHRLMAGLLIMSLSMFPIGM 293 (400)
T ss_pred hhhhHHhhcC-C------chHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-------chhHHHHHHHHHHHHHHHHHHH
Confidence 1122111111 0 0001111122222222222222333332 11 1224466777777777666554
Q ss_pred HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 403 VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLV 482 (558)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l 482 (558)
.+ +.+++....++.+++.+...|...+++.+.+|++.||+++|+.++...+|..+|+.+
T Consensus 294 ~~---------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 294 VS---------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred hh---------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence 32 334444555678888888888988999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 008651 483 VEIVNKV 489 (558)
Q Consensus 483 ~~~i~~~ 489 (558)
.|.+.+.
T Consensus 353 ~G~l~~~ 359 (400)
T PRK11646 353 GGWLFDL 359 (400)
T ss_pred hHHHHHH
Confidence 9998753
No 15
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.94 E-value=4.7e-24 Score=224.99 Aligned_cols=359 Identities=11% Similarity=0.009 Sum_probs=233.6
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
..+.+.+++|.|+.+.+++.+.+.++..+++++.|+++|| +||||++..+.++..++.+++.++.
T Consensus 37 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-------------- 101 (406)
T PRK11551 37 AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAW-------------- 101 (406)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc--------------
Confidence 3346678899999999999999999999999999999999 7999999999998888888777753
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
+++.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..+++.+++.+
T Consensus 102 -------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 102 -------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred -------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999876 99999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccc
Q 008651 176 STNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEI 255 (558)
Q Consensus 176 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (558)
.+..+|++.|++.++..++..+......++.++.++++. ..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------~~~~~----------------- 206 (406)
T PRK11551 163 AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG-------------------AGKQR----------------- 206 (406)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC-------------------cchhh-----------------
Confidence 999999999998776544443333322221110000000 00000
Q ss_pred cccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccc
Q 008651 256 LKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDR 335 (558)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (558)
+ ...+ ... +. .+..+........+.....++....+.+.+. .. .+++
T Consensus 207 ----~--~~~~--~~~---------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~-~g~s- 253 (406)
T PRK11551 207 ----A--PVLR--ALF---------------------GE-GRATATLLLWISYFFTLIVLYFLLNWLPSLL-VG-QGLS- 253 (406)
T ss_pred ----h--hhHH--HHh---------------------hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCC-
Confidence 0 0000 000 00 0011111111111111112222222222211 11 1111
Q ss_pred cccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008651 336 NLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHN 415 (558)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~ 415 (558)
....+.......+..+++..+.+++.||+++| +.+..+.+.+.++++.....
T Consensus 254 -----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~------------ 305 (406)
T PRK11551 254 -----RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA------------ 305 (406)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc------------
Confidence 11122333444556677888889999998877 33444444455544443322
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 008651 416 MVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLA 495 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 495 (558)
.+.+.+....++.+++.....+...++..+.+|++.||+++|+.+....+|+.+++.+.|.+.+..
T Consensus 306 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----- 371 (406)
T PRK11551 306 ---------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----- 371 (406)
T ss_pred ---------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----
Confidence 133444455667777777777888899999999999999999999999999999999999876311
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008651 496 SNNLNRDKLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 496 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
+.+...++..+...+++.+..+..
T Consensus 372 ------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 ------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 123344455555555555544433
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.94 E-value=6.2e-24 Score=220.95 Aligned_cols=360 Identities=11% Similarity=0.014 Sum_probs=221.6
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
++.+.+.....+| .+++++|+|+++.|++.+.|.+++.+++++.|+++|| +|||+++..+......+.. .....
T Consensus 3 ~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~--- 76 (368)
T TIGR00903 3 SQAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP--- 76 (368)
T ss_pred hhHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh---
Confidence 3445554445554 5678999999999999999999999999999999999 7999887655544444432 22321
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
.++..+++.|+++|+|.+.. +.....++|++|+++ |++++++...+.++|
T Consensus 77 -----------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG 126 (368)
T TIGR00903 77 -----------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLG 126 (368)
T ss_pred -----------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 16789999999999999864 555666799999876 999999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 008651 165 SIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEI 244 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (558)
.++++.+++++.+++|||+.|++.++..++..+++....|+.++.+++..+..
T Consensus 127 ~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~--------------------------- 179 (368)
T TIGR00903 127 IIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFK--------------------------- 179 (368)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchH---------------------------
Confidence 99999999999999999999998766655444443333222111000000000
Q ss_pred ccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccc
Q 008651 245 HDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQT 324 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 324 (558)
+. ..+...+. ++++.....+..++....++....+.++
T Consensus 180 ---------------~~--~~~~~~ll-------------------------~~~~~~~~~~~~~~~~~~~~~~~~wlp~ 217 (368)
T TIGR00903 180 ---------------DA--VKEFGALA-------------------------GRKDLWIIGAILGFGVALFDNLAIWLEA 217 (368)
T ss_pred ---------------HH--HHHHHHHH-------------------------cChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000010 1122222222333334444455555555
Q ss_pred eeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008651 325 FCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVE 404 (558)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~ 404 (558)
++.. . +++.. .+... .+....+....+++.||..||.. +........++.+++++.....
T Consensus 218 ~L~~-~-g~s~~-------~~~~~---~l~~~~g~~g~~~~~d~~~r~~~-------r~~~~~~~~~~~a~~~~~~~~~- 277 (368)
T TIGR00903 218 ALRP-A-GLEDI-------AGDAV---ALAILAGLIGVAVIPDRVARAGL-------RSIYIRAAALLIAAFFLALAFE- 277 (368)
T ss_pred HHHH-C-CCChH-------HHHHH---HHHHHHHHHHHHHhhHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHHc-
Confidence 4422 1 12211 11111 22222333334667777765511 1111222233334333333321
Q ss_pred HHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 405 TKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVE 484 (558)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~ 484 (558)
.+....+....+.+++.....+..+++..|.+|++.||+++|+.+....+++.+++.+.+
T Consensus 278 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~ 337 (368)
T TIGR00903 278 --------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM 337 (368)
T ss_pred --------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence 122233334455556666666778889999999999999999999999999999999888
Q ss_pred HhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008651 485 IVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYL 523 (558)
Q Consensus 485 ~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 523 (558)
.+. . +....|.++++..+++++..+
T Consensus 338 ~~~---------~-----~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 338 LFI---------S-----SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHh---------c-----CHHHHHHHHHHHHHHHHHHHH
Confidence 664 1 233456777777777766654
No 17
>PRK10504 putative transporter; Provisional
Probab=99.94 E-value=7.4e-24 Score=228.11 Aligned_cols=389 Identities=9% Similarity=0.043 Sum_probs=236.6
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
..+.++.+...+|.+. +++|.|+.+.+++.+.+.++..++.+++|+++|| +||||+++.+.+++.++.+++.++.
T Consensus 22 ~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~--- 96 (471)
T PRK10504 22 QSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALSG--- 96 (471)
T ss_pred HHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHhC---
Confidence 3345566666677665 5799999999999999999999999999999999 7999999999999988888877653
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
+.+.+++.|+++|+|.+...|...+++.|.+|+++ |++++++.....++|
T Consensus 97 ------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 146 (471)
T PRK10504 97 ------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVG 146 (471)
T ss_pred ------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999998775 899999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHH----H-HHHhhCCCCCCCccc
Q 008651 165 SIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVF----V-AAIHNRNLPKPEMAD 239 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~ 239 (558)
..+||.+++++.++.|||+.|++..+...+..+......++.+.++++.+......... . ......+.... ...
T Consensus 147 ~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 225 (471)
T PRK10504 147 PLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGL-SPL 225 (471)
T ss_pred HHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc-chH
Confidence 99999999999999999999999887665555544443333221111111111000000 0 00000000000 000
Q ss_pred hhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHh
Q 008651 240 QLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCL 319 (558)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (558)
..... .-.............+.... +..+++ -.++++........++....+ ...
T Consensus 226 ~~~~~------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~-----l~~~~~~~~~l~~~~~~~~~~-~~~ 280 (471)
T PRK10504 226 AIAGL------------VAVGVVALLLYLLHARNNNR-------ALFSLK-----LFRTRTFSLGLAGSFAGRIGS-GML 280 (471)
T ss_pred HHHHH------------HHHHHHHHHHHHHHHhcCCC-------CccCHH-----HhcccchHHHHHHHHHHHHHH-HHH
Confidence 00000 00000000000000000000 000100 001111111111111111111 111
Q ss_pred hcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 008651 320 AQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAV 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~ 399 (558)
....+++.++..+.+ ....+.......+..++..++.+++.||+++| +.+..+.++.+++.++
T Consensus 281 ~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~ 343 (471)
T PRK10504 281 PFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSLL 343 (471)
T ss_pred HHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHH
Confidence 111122222111111 11112222333444455567788888888877 4566777777766655
Q ss_pred HHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008651 400 AAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLS 479 (558)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg 479 (558)
+.... ...+.++.....++.|++.+...+..+.+..+.+|++.+|.++|+.++.+.+|..+|
T Consensus 344 ~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig 405 (471)
T PRK10504 344 FMLVA------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIG 405 (471)
T ss_pred HHhcc------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHH
Confidence 54421 011233334456777888888888888999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 008651 480 SLVVEIVNKV 489 (558)
Q Consensus 480 ~~l~~~i~~~ 489 (558)
+.+.+.+.+.
T Consensus 406 ~~i~g~ll~~ 415 (471)
T PRK10504 406 VTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 18
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.94 E-value=5e-24 Score=224.10 Aligned_cols=360 Identities=14% Similarity=0.021 Sum_probs=235.4
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
+.....+ +.+++++|+|.++.+++.+.+.+++.+++++.|+++|| +|||+++..+..++.++.+.+++++
T Consensus 26 ~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~-------- 95 (393)
T PRK09705 26 TSVGPLL-PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP-------- 95 (393)
T ss_pred hccchhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc--------
Confidence 3344444 46778999999999999999999999999999999999 7999999999999999999999975
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
+++.++++|+++|+|.+...+....++.+++| ++ |+++++++..+.++|..+|+
T Consensus 96 -------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~ 149 (393)
T PRK09705 96 -------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGA 149 (393)
T ss_pred -------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999987 44 89999999999999999999
Q ss_pred HHHHHhcccc-chhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccc
Q 008651 170 TFIVWISTNQ-GWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDRE 248 (558)
Q Consensus 170 ~~~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (558)
.+++++.++. +||..+.+.++..++.....+...++ +|++++ ++..
T Consensus 150 ~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------~~~~---------- 196 (393)
T PRK09705 150 AITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH-------------------KTTT---------- 196 (393)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc-------------------CCCc----------
Confidence 9999988875 89988766544433333322221111 111100 0000
Q ss_pred ccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeee
Q 008651 249 AGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQ 328 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 328 (558)
. ....+ .+++.....+........++....+.+.+...
T Consensus 197 ---------~-------------------------~~~~l--------~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~ 234 (393)
T PRK09705 197 ---------T-------------------------PVRVV--------FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE 234 (393)
T ss_pred ---------C-------------------------Ccccc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 01111111111112222222232323333221
Q ss_pred ecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008651 329 QSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRK 408 (558)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~ 408 (558)
.+.+ ....+.......+..+++..+.+++.||.++| +.+.++..+..++++.+....
T Consensus 235 --~g~s------~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~---- 291 (393)
T PRK09705 235 --IGAS------AQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP---- 291 (393)
T ss_pred --cCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc----
Confidence 1111 11123344455666777888888888877766 445666666666655444321
Q ss_pred hhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 409 SVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-AGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.+.... ...+.+++.+...|.......+..| ++.+|+.+|+.+....+++.+++.+.+++.
T Consensus 292 ----------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 292 ----------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred ----------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1234567776777777666667774 678999999999999999999999999887
Q ss_pred hccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 488 KVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
+.. + .+...|++.++++++..+..+.+.++++.+
T Consensus 354 ~~~---------g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 354 SIS---------G--NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHh---------C--CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 432 1 233445666666666666666665554443
No 19
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.93 E-value=9.8e-24 Score=219.79 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=138.0
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
.....+++.+++|+|+.+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++..+++++.
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~----------- 80 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG----------- 80 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-----------
Confidence 3444567889999999999999999999999999999999999 7999999999999999998888864
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
+++.++++|++.|++.+...+...+++.|.+|+++ |++++++.....++|..+++.++
T Consensus 81 ----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 81 ----------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred ----------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence 67899999999999999999999999999999876 99999999999999999999999
Q ss_pred HHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 173 VWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 173 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+++.+..+||+.|++.++..++..+...
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988776555444433
No 20
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.93 E-value=7e-24 Score=224.74 Aligned_cols=374 Identities=11% Similarity=0.005 Sum_probs=234.5
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..++.+ .++++.+..+.|++.+.+.++..+++++.|+++|| +||||++..+.++..++.+.++.....+
T Consensus 38 ~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~--------- 106 (417)
T PRK10489 38 VAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLP--------- 106 (417)
T ss_pred HHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcC---------
Confidence 344545 46788899999999999999999999999999999 7999999998888887776665421100
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
..+++.+++.|++.|++.+...++..+++.|.+|+++ |+++.++.+...++|..+||.+++
T Consensus 107 -------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g 167 (417)
T PRK10489 107 -------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGG 167 (417)
T ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHH
Confidence 1156778889999999999888999999999998876 999999999999999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccc
Q 008651 174 WISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDT 253 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (558)
.+.+..+|++.|++.++..++..+..+.. ++ .++++.+ ++++ ..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~---~~~~~~~-------------------~~~~--~~----------- 211 (417)
T PRK10489 168 LLIAAGGVAWNYGLAAAGTFITLLPLLRL-PA---LPPPPQP-------------------REHP--LR----------- 211 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CC---CCCCCcc-------------------cccc--hH-----------
Confidence 99888899999998776655554433322 11 1111000 0000 00
Q ss_pred cccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccc
Q 008651 254 EILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTM 333 (558)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (558)
+..+.... ....+.....+................ +.+..+..+.
T Consensus 212 ---------~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~g~ 256 (417)
T PRK10489 212 ---------SLLAGFRF-------------------------LLASPVVGGIALLGGLLTMASAVRVLY-PALADEVWQM 256 (417)
T ss_pred ---------HHHHHHHH-------------------------HHcChHHHHHHHHHHHHHHHHhHHHhh-HHHHHhccCC
Confidence 00000000 000011111111111111111111111 1111111111
Q ss_pred cccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008651 334 DRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVE 413 (558)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~ 413 (558)
+.. ..+.+.....++.+++..+.+++.||..++ +.+..+.++.+++++.+...
T Consensus 257 ~~~------~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~---------- 309 (417)
T PRK10489 257 GAA------QIGLLYAAVPLGAALGALTSGWLAHSARPG-----------LLMLLSTLGSFLAVGLFGLM---------- 309 (417)
T ss_pred Chh------HhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----------hHHHHHHHHHHHHHHHHHcc----------
Confidence 110 122223333444555555555555432221 34566667777766655432
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 008651 414 HNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGW 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~ 493 (558)
.+.+......++.|++.+...+...++..+..|++.||+++|+.+....+|..+|+.+.|.+.+.
T Consensus 310 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---- 374 (417)
T PRK10489 310 -----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---- 374 (417)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH----
Confidence 13444556677788888887788788899999999999999999999999999999999988631
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhc
Q 008651 494 LASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYKEVEIKQ 538 (558)
Q Consensus 494 ~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 538 (558)
.+ ....++..+++.++..++.+...++.|+++.|+.+
T Consensus 375 -----~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 375 -----MT---PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred -----hc---hhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 11 22334556666666556555556666665555443
No 21
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.93 E-value=7.4e-24 Score=218.95 Aligned_cols=352 Identities=10% Similarity=0.020 Sum_probs=233.7
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
+..++.-.....++.|. .+++.+..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++..++.++..+....
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 10 ISLIGTAITQVALPLYV-LAGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555556667766 4689999999999999999999999999999999 799999999999888888877776421
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+ ..+.+.+++.|++.|++.+...+...+++.|++|+++ |++++++.+...++
T Consensus 88 ~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 139 (365)
T TIGR00900 88 G----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSL 139 (365)
T ss_pred C----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHH
Confidence 1 1267789999999999999999999999999999876 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
|.++||.+++++.+..||++.|++.++..++..+.....+.+.+++ ++.++.. ++ ...
T Consensus 140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~--~~~- 197 (365)
T TIGR00900 140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALS------------------NA--VLR- 197 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccc------------------hh--HHH-
Confidence 9999999999999999999999987776555544433322111000 0000000 00 000
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ 323 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 323 (558)
+..+..... .++++.....+........+........
T Consensus 198 -------------------~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (365)
T TIGR00900 198 -------------------DTREGIKFV------------------------LKNPLLRTLLLLALLFNLVFAPAIVALF 234 (365)
T ss_pred -------------------HHHhHHHHH------------------------HcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000000 0011111111111111111111111111
Q ss_pred ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVV 403 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~ 403 (558)
+++..+..+.+ ....+.+.....+..+++..+.+++.||.++| +.+..+..+.+++++.....
T Consensus 235 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 235 PYVQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----------ALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHHHHhh
Confidence 22222111111 11112233344555566677777777766665 44556666666666655543
Q ss_pred HHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 404 ETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVV 483 (558)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~ 483 (558)
. + +.+...+..++.|++.+...+....+..+.+|++.||+++|+.++...++..+++.+.
T Consensus 298 ~-------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 298 P-------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred c-------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2555666778899999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 008651 484 EIVN 487 (558)
Q Consensus 484 ~~i~ 487 (558)
|.+.
T Consensus 358 g~l~ 361 (365)
T TIGR00900 358 GPLA 361 (365)
T ss_pred HHHH
Confidence 8876
No 22
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.4e-23 Score=213.80 Aligned_cols=348 Identities=14% Similarity=0.119 Sum_probs=245.1
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
+-+.+++|+|..++|++++.|.+++.++.|+...+.|| +.||++++..+.++.++.+++++++
T Consensus 37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp---------------- 99 (394)
T COG2814 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAP---------------- 99 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 46789999999999999999999999999999999999 7999999999999999999999985
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST 177 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 177 (558)
+++.+.++|++.|+..|..++...++.++..|+++ |+++.++...+..++.++|..++.++.+
T Consensus 100 -----------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 100 -----------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 88999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCC--ChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccc
Q 008651 178 NQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKG--SPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEI 255 (558)
Q Consensus 178 ~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (558)
.+|||..|++.+...++..+......| +.+.+++ .+..+..+
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~---------------------------------- 206 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLR---------------------------------- 206 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHH----------------------------------
Confidence 999999999988877777666665555 1111110 00000000
Q ss_pred cccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccc
Q 008651 256 LKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDR 335 (558)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (558)
.. ++.+....+....+....++..|.+..++.. +..+++
T Consensus 207 --------------~l-------------------------~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~-~v~g~s- 245 (394)
T COG2814 207 --------------LL-------------------------RRPGVLLGLLATFLFMTGHFALYTYIRPFLE-SVAGFS- 245 (394)
T ss_pred --------------Hh-------------------------cCchHHHHHHHHHHHHcchhhhHHhHHHHHH-HccCCC-
Confidence 00 0011111122222222223333322222221 111222
Q ss_pred cccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008651 336 NLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHN 415 (558)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~ 415 (558)
....++....+.+..+++..+.+++.|| +.| +.+...+.++++.++.+.+..
T Consensus 246 -----~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----------~~l~~~~~l~a~~~l~l~~~~----------- 297 (394)
T COG2814 246 -----VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----------RALIAALLLLALALLALTFTG----------- 297 (394)
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----------hHHHHHHHHHHHHHHHHHHhc-----------
Confidence 1123445666678888899999999988 443 345666677777777766542
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 008651 416 MVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLA 495 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 495 (558)
.+.+..+...++.+++.....+....-..+ .-++.+..+++++....++|..+|..++|.+.+
T Consensus 298 ---------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~------- 360 (394)
T COG2814 298 ---------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD------- 360 (394)
T ss_pred ---------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 244444445555444444444444443433 225779999999999999999999999999873
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 496 SNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 496 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
+ .++....|..+.+.+++.+..+...
T Consensus 361 --~---~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 361 --A---LGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred --h---hchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344456777777777766655443
No 23
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.93 E-value=2.6e-23 Score=224.96 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=121.0
Q ss_pred hHHHHHHHhhhhcCCCchh-hhH-----HHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 12 NMVSLVTYFHGYMNFSLTK-SAT-----TLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
+..+...++.++++.+..+ .++ +.+.+.++..+++++.|+++|| +|||+++.++++++.++.+++++++++.+
T Consensus 34 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~~ 112 (490)
T PRK10642 34 VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYAT 112 (490)
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3445566888888654422 222 2466778899999999999999 79999999999999999999999752110
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+- ......+++.|+++|+|.|+..+...++++|++|+++ |+++.++...+.++|.
T Consensus 113 ~g-------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~ 167 (490)
T PRK10642 113 IG-------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGF 167 (490)
T ss_pred HH-------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHH
Confidence 00 0011258899999999999999999999999999887 9999999988888888
Q ss_pred HHHHHHHHHhc--------cccchhhHHHHHHHHHHH
Q 008651 166 IIGVTFIVWIS--------TNQGWDWSFGVCTIAVLF 194 (558)
Q Consensus 166 ~~g~~~~~~l~--------~~~gw~~~f~i~~~~~~~ 194 (558)
.+|+.+...+. .++|||+.|++.++..++
T Consensus 168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 88876654442 268999999997654443
No 24
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.93 E-value=4.7e-24 Score=230.20 Aligned_cols=382 Identities=12% Similarity=0.091 Sum_probs=241.0
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
.....+++.+++|.+..+.+|+.+.+.++..++.++.|+++|| +|||+.++.+.+++.++.++++.+.
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~----------- 88 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAP----------- 88 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcC-----------
Confidence 3444557778999999999999999999999999999999999 7999999999999999999888763
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
+++.++++|+++|++.+...+...+++.|.+|+++ |++++++++...++|..+||.++
T Consensus 89 ----------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 89 ----------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred ----------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccH
Confidence 67789999999999999999999999999999876 99999999999999999999999
Q ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCC-ChhHHHHH-----HHHHHHhhCCCCCCCccchhhhhcc
Q 008651 173 VWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKG-SPIIRILQ-----VFVAAIHNRNLPKPEMADQLHEIHD 246 (558)
Q Consensus 173 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (558)
+++.++++||+.|++..+..++..++.....++.++++.++ +....... .......+.......++......
T Consensus 147 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 224 (485)
T TIGR00711 147 GWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILIL-- 224 (485)
T ss_pred hHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHH--
Confidence 99999999999999987766555544444333221111111 11110000 00011111000000000000000
Q ss_pred ccccccccccccccch-hhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccce
Q 008651 247 REAGLDTEILKRTDQF-RFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTF 325 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 325 (558)
........ .+..+ ... ... +..+++. .++++.....+..+.....++...... +.
T Consensus 225 --------~~~~~~~~~~~~~~-~~~--~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ 280 (485)
T TIGR00711 225 --------SITGLVAIIAFVVW-ELT--DDN-------PLVDLRL-----FKYRNFTIGCVYMSLLGLGLYGSFYLL-PL 280 (485)
T ss_pred --------HHHHHHHHHHHHHH-HHc--CCC-------CccCHHH-----HcCCChHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 00000000 00000 000 000 0001000 011111111111111111111111111 11
Q ss_pred eeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 326 CIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVET 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~ 405 (558)
+.++..+.+ ....+.......+..+++.++.+++.||+++| +.+..+..+.+++++++....
T Consensus 281 ~~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~~~~~- 342 (485)
T TIGR00711 281 YLQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWRAFTF- 342 (485)
T ss_pred HHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHHhccC-
Confidence 221111111 11122334445566778888999999988877 457778888877777665211
Q ss_pred HHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 406 KRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEI 485 (558)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~ 485 (558)
.+..+.+......++.|++.+...++......+..|++.+|+++|+.++.+.+|+.+|+.+.+.
T Consensus 343 ----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 343 ----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred ----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445556667889999998887777888899999999999999999999999999999988
Q ss_pred hhh
Q 008651 486 VNK 488 (558)
Q Consensus 486 i~~ 488 (558)
+.+
T Consensus 407 ~~~ 409 (485)
T TIGR00711 407 ILT 409 (485)
T ss_pred HHH
Confidence 763
No 25
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.93 E-value=2.6e-23 Score=221.56 Aligned_cols=144 Identities=12% Similarity=0.029 Sum_probs=130.6
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
+.+.+++|+|..+.+++.+.+.++..++++++|+++|| +|||+++.++.++..++.++++++.
T Consensus 47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 109 (434)
T PRK11663 47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSS---------------- 109 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHh----------------
Confidence 34456899999999999999999999999999999999 7999999999999999998888764
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST 177 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 177 (558)
+++.+++.|++.|++.|...+...+++.|++|+++ |++++++++...++|..++|.+++++.+
T Consensus 110 -----------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 110 -----------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred -----------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999876 9999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHH
Q 008651 178 NQGWDWSFGVCTIAVLFA 195 (558)
Q Consensus 178 ~~gw~~~f~i~~~~~~~~ 195 (558)
.+|||+.|++.++..++.
T Consensus 173 ~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999877664433
No 26
>PRK10054 putative transporter; Provisional
Probab=99.93 E-value=7.5e-24 Score=222.91 Aligned_cols=342 Identities=12% Similarity=0.122 Sum_probs=224.7
Q ss_pred cchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008651 3 GLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~ 82 (558)
++-..+++....+++.|+++++|+|..+.|++.+.+.+++.+.+++.|+++|| +|||++++++.++..++.++..+++
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~- 94 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVN- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHh-
Confidence 34567788888999999999999999999999999999999999999999999 7999999999998888888887764
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
+.+.+++.|.+.+.+.+...+...++..|.+|+++ |++++++.+...+
T Consensus 95 --------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~ 142 (395)
T PRK10054 95 --------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLN 142 (395)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHH
Confidence 56677778888888888888889999999998776 9999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhh
Q 008651 163 VGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLH 242 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (558)
+|.++||.+++++.+ .+|+.+|++.++..++..+...+..++.+ ++++++...
T Consensus 143 lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~------------------------ 195 (395)
T PRK10054 143 IGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGS------------------------ 195 (395)
T ss_pred HHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--cccccchhh------------------------
Confidence 999999999999875 79999999888776665444433222211 110000000
Q ss_pred hhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcc
Q 008651 243 EIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQL 322 (558)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 322 (558)
. .+..... ++++.+...+..++............
T Consensus 196 ------------~---------~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 229 (395)
T PRK10054 196 ------------V---------WSPSVLL-------------------------QDKALLWFTCSGFLASFVSGAFASCI 229 (395)
T ss_pred ------------h---------hhhhhhc-------------------------cCceehHHHHHHHHHHHHHHHhhhhH
Confidence 0 0000000 11111111111111111111111111
Q ss_pred cceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008651 323 QTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAV 402 (558)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~ 402 (558)
..+ .....+.+.. ....+.+...+.+......+..+++.||.++| +.+..++.+..++.+....
T Consensus 230 ~~~-~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~ 293 (395)
T PRK10054 230 SQY-VMVVADSDFA----EKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----------PLMTAGTLCFVIGLVGFIF 293 (395)
T ss_pred HHH-HHHhcccchH----HHHHHHHHHhhhhheeeehhHHHHHHccCCch-----------hHHHHHHHHHHHHHHHHHH
Confidence 111 1100010100 00011122222222223334445555555444 4566777777777665543
Q ss_pred HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 403 VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLV 482 (558)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l 482 (558)
.. .+.+.+.+..++.++|++...|...+++.+.+|++.+|++.+..+ ...+|..+|+.+
T Consensus 294 ~~--------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~ 352 (395)
T PRK10054 294 SG--------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLV 352 (395)
T ss_pred cc--------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHH
Confidence 21 134444556789999999888998899999999999999988765 556899999999
Q ss_pred HHHhhh
Q 008651 483 VEIVNK 488 (558)
Q Consensus 483 ~~~i~~ 488 (558)
.|.+.+
T Consensus 353 ~G~l~~ 358 (395)
T PRK10054 353 SGVILT 358 (395)
T ss_pred HHHHHH
Confidence 998873
No 27
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.92 E-value=5.7e-23 Score=213.88 Aligned_cols=362 Identities=10% Similarity=0.072 Sum_probs=225.1
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHH-HHHHHHHHHHHHHHhhh
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVL-FGCIELLGLAILAIQAH 82 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~-~~~~~~~~~~~~~~~~~ 82 (558)
+-.+++......++.|+++++|.|+.+.|++.+.+.+...+.+++.|+++|| +||||.++. +.++..++.++++++.
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~- 85 (375)
T TIGR00899 8 LTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNR- 85 (375)
T ss_pred HHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcc-
Confidence 3445666777889999999999999999999999999999999999999999 799987665 4445556666666643
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhh--HHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSF--FNWFLFS 160 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~--~~~~~~~ 160 (558)
+++.+++.|++++.+.+...|...++..|..|+++ |++. .++....
T Consensus 86 --------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 133 (375)
T TIGR00899 86 --------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQ 133 (375)
T ss_pred --------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHH
Confidence 56778888999888888888888888888876554 5543 5777888
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccch
Q 008651 161 LTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQ 240 (558)
Q Consensus 161 ~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (558)
.++|.++||.+++++.+..|||+.|++.++..++..+......++.+++++++. +.
T Consensus 134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~--- 189 (375)
T TIGR00899 134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---------------------TR--- 189 (375)
T ss_pred HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---------------------Cc---
Confidence 899999999999999999999999999887655554444332232111100000 00
Q ss_pred hhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhh
Q 008651 241 LHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLA 320 (558)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (558)
. +. .... + + ++.+.. ....+...........
T Consensus 190 -------------~--------~~---~~~~-----------------~----~--~~~~~~--~~~~~~~~~~~~~~~~ 220 (375)
T TIGR00899 190 -------------L--------EV---RGLL-----------------A----S--RDTRLL--FVACTLMWGCNILYII 220 (375)
T ss_pred -------------c--------hh---hhhh-----------------c----C--cchHHH--HHHHHHHHHHHHHHHh
Confidence 0 00 0000 0 0 011111 1111111111111111
Q ss_pred cccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008651 321 QLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVA 400 (558)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~ 400 (558)
..+. +..+..+.+.. ..+.+........+++.++.+++.||+++| +.+..+.++..+.++..
T Consensus 221 ~~~~-~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~ 282 (375)
T TIGR00899 221 NMPL-LIIHELGLPDK------LAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----------RLMLLAALAGVAFYTGL 282 (375)
T ss_pred hhHH-HHHHHcCCCHH------HHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----------hHHHHHHHHHHHHHHHH
Confidence 1111 11111111110 011112222233445566778888888877 33444444444443333
Q ss_pred HHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 008651 401 AVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSS 480 (558)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~ 480 (558)
... .+.+......++.+++.+...+....+..+..|++ +++++++.+...++|..+++
T Consensus 283 ~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 283 AAD---------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHH
Confidence 222 13344455567778888887888888888888875 56999999999999999999
Q ss_pred HHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008651 481 LVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLA 524 (558)
Q Consensus 481 ~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 524 (558)
.+.+.+.+ .. ++...|++.+++++++.+...+
T Consensus 341 ~~~g~~~~---------~~---g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 341 SVGGILAE---------RW---SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHH---------hc---cchhHHHHHHHHHHHHHHHHhe
Confidence 99998763 11 2334566677776666665543
No 28
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.92 E-value=1.5e-23 Score=217.51 Aligned_cols=333 Identities=14% Similarity=0.063 Sum_probs=220.3
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..+.+++.+++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++++++.
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~------------ 89 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD------------ 89 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH------------
Confidence 445678889999999999999999999999999999999999 7999999999999999999988874
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+++.+++.|++.|++.+...+.....+.+++|+ + |+++.++...+.++|..+++.+.+
T Consensus 90 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~ 147 (377)
T TIGR00890 90 ---------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLIT 147 (377)
T ss_pred ---------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHH
Confidence 778899999999999998888888889998874 3 899999999999999988777777
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccc
Q 008651 174 WISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDT 253 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (558)
.+.+..|||+.|++.++..++..+......++.++++++++ .+.
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~---------------- 191 (377)
T TIGR00890 148 SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN--------------------IEV---------------- 191 (377)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC--------------------ccc----------------
Confidence 77777899999998887655554443332221110000000 000
Q ss_pred cccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccc
Q 008651 254 EILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTM 333 (558)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (558)
..++. +..... ++++.................... ....+... .+.
T Consensus 192 ----~~~~~---~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 237 (377)
T TIGR00890 192 ----SVKDY---TVWEML-------------------------RTPQFWVLYLSFFLNAVSGLLLIG-LYKPYGQS-LGL 237 (377)
T ss_pred ----chhhh---hHHHHH-------------------------cCccHHHHHHHHHHHhHHHHHHHH-HHHHHHHH-cCC
Confidence 00000 000000 111111111111111111111110 00111110 011
Q ss_pred cccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008651 334 DRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVE 413 (558)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~ 413 (558)
+ ....+.+.....+..+++.++.+++.||++|| +.+..+..+.+++++......
T Consensus 238 ~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~--------- 291 (377)
T TIGR00890 238 S------DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP--------- 291 (377)
T ss_pred C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc---------
Confidence 1 00112334445666778888899999999887 335666677777666554321
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 414 HNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.......+...++.+++.+...+....+..|..|++.|++..|+.+....+|+.+++.+.+.+.
T Consensus 292 ----------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 292 ----------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred ----------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223334455666666666666678889999999999999999999999999999999875
No 29
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.92 E-value=1.6e-23 Score=224.54 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=128.1
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
..+.+++|.|.++.+++.+.+.+...++.+++|+++|| +|||++++.+.++..++.++++++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 45568999999999999999999999999999999999 7999999999999999998888864
Q ss_pred CcCcCCCCCchhHHHHH-HHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008651 98 LVNQCDDADGTQVAILF-TGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 176 (558)
+.+.++ ..|++.|++.+...+...+++.++++ ++ |+++.++.+.+.++|..++|.+++++.
T Consensus 106 -----------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 106 -----------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred -----------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 455554 45789999999876777788889986 44 999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHh
Q 008651 177 TNQGWDWSFGVCTIAVLFATVFVIMG 202 (558)
Q Consensus 177 ~~~gw~~~f~i~~~~~~~~~~~~~~~ 202 (558)
+.+|||++|++.++..+++.+..++.
T Consensus 168 ~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 168 ESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887766555444433
No 30
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.92 E-value=5.2e-24 Score=219.14 Aligned_cols=345 Identities=17% Similarity=0.206 Sum_probs=225.4
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
+..++.......++.++.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.+++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~-- 83 (352)
T PF07690_consen 7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFAS-- 83 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhh--
Confidence 3444555555666658889999999999999999999999999999999999 7999999999999999966666542
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+.+.+++.|++.|++.+...+...+++.|++|+++ |++++++.+...++
T Consensus 84 -------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~ 132 (352)
T PF07690_consen 84 -------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSL 132 (352)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHH
T ss_pred -------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhh
Confidence 45589999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
|.++||.+++++.+..+||+.|++.++..++..++.....++.+.++++.++. ++.
T Consensus 133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~------------------~~~------ 188 (352)
T PF07690_consen 133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPK------------------ESE------ 188 (352)
T ss_dssp HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST------------------TTT------
T ss_pred hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccc------------------ccc------
Confidence 99999999999999999999999988887776654333222111110000000 000
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHH-HHHHHHHHHHHhhcc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLP-IIVSTLFMNTCLAQL 322 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~ 322 (558)
...+.++.+ .|+ ...+.+..+..+. .......+.......
T Consensus 189 --------------~~~~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF07690_consen 189 --------------SKKPKPLKP--------------------GFK-----SLFKNPVLWILLIAFFLFFFVFSGFSFFL 229 (352)
T ss_dssp ----------------HHHCCCH---------------------CT-----HHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------ccccccccc--------------------ccc-----cccccchhhhhhhhhhHHHHHHHHhhccc
Confidence 000000000 011 1111221211111 111111222211111
Q ss_pred cceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008651 323 QTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAV 402 (558)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~ 402 (558)
+.+..+..+.+ . ....+.+.....+..+++.++.+++.||+++| +..........++.+....
T Consensus 230 -~~~l~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 292 (352)
T PF07690_consen 230 -PLYLQEVLGFS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALGLLL 292 (352)
T ss_dssp -HHHCCHHHHCC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHCC
T ss_pred -chhhhhccCCC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHH
Confidence 11212211111 0 00111223334455566677888888887765 2233333333333333332
Q ss_pred HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 008651 403 VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSS 480 (558)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~ 480 (558)
... ..+..+.....++.|++.+...+....++.+.+|++.+|+++|+.++..++|+.++|
T Consensus 293 ~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 293 LPF------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp SHH------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 210 124455566778899999999999999999999999999999999999999998886
No 31
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.92 E-value=5.4e-23 Score=218.32 Aligned_cols=144 Identities=14% Similarity=0.171 Sum_probs=131.8
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
.++..++++++|.|+.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++.++++++.
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~------------ 104 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLAS------------ 104 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 344456778999999999999999999999999999999999 7999999999999999999888874
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+.+.++++|++.|+|.|...+....++.|.+|+++ |+++.+++..+.++|.++++.+.+
T Consensus 105 ---------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 105 ---------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred ---------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHH
Confidence 67899999999999999999999999999999886 999999999999999999999999
Q ss_pred HhccccchhhHHHHHHHH
Q 008651 174 WISTNQGWDWSFGVCTIA 191 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~ 191 (558)
.+.+..+||+.|++..+.
T Consensus 164 ~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 164 SFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHcccCCHHHHHHHHHHH
Confidence 999999999999986543
No 32
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.92 E-value=1e-22 Score=214.92 Aligned_cols=331 Identities=12% Similarity=0.047 Sum_probs=218.1
Q ss_pred HhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 008651 19 YFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNL 98 (558)
Q Consensus 19 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (558)
.+.+++|.|..+.++..+.+.+++.++.++.|+++|| +||||++..+..+..++.+++..+.
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------------- 99 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQ----------------- 99 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 4568999999999999999999999999999999999 7999999999999998888887753
Q ss_pred cCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008651 99 VNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN 178 (558)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~ 178 (558)
+.+.+++.|+++|++.+...+...+.+.|.+|+++ |.+.+++......+|..+||.+++++.++
T Consensus 100 ----------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 163 (406)
T PRK15402 100 ----------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHV 163 (406)
T ss_pred ----------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788899999999999988999999999999876 88999998888889999999999999998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccccccccccc
Q 008651 179 QGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKR 258 (558)
Q Consensus 179 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (558)
.+||+.|++.++..++..+......|+.+.+++++.+..+ ..
T Consensus 164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~---------------- 205 (406)
T PRK15402 164 LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKE----------------------LG---------------- 205 (406)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHH----------------------HH----------------
Confidence 9999999987777655544433322221110000000000 00
Q ss_pred ccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeeccccccccc
Q 008651 259 TDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNLF 338 (558)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
.+..... ++++.....+......... ..+....+.+..+..+.+
T Consensus 206 ------~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~---- 249 (406)
T PRK15402 206 ------RDYKLVL-------------------------KNRRFVAGALALGLVSLPL-LAWIALSPVILISGEQLS---- 249 (406)
T ss_pred ------HHHHHHH-------------------------cCcHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCCC----
Confidence 0000000 1111111111111111111 111111111111111111
Q ss_pred ccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 008651 339 GFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVD 418 (558)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~ 418 (558)
....+.......+..+++.++.+++.||+++| +.+.++.+++.++.+.......
T Consensus 250 --~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~g~~~~~~~~~------------- 303 (406)
T PRK15402 250 --SYEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----------SLIRMGLWPMVAGLLLAALATV------------- 303 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 00011112222344556677778888887776 4567777777777766654320
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 419 SIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 419 ~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
....+.++.+...++.+++.+...+..+..... .+++.+|+..++.++.+.++..+|+.+.+.+.
T Consensus 304 ---~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 304 ---ISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred ---cccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 001245566777888999998887777665543 45589999999999999999999999988775
No 33
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.92 E-value=6e-23 Score=217.29 Aligned_cols=152 Identities=11% Similarity=0.064 Sum_probs=135.3
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
.+....+++++|+|+.+.+++.+.+.+++.+++++.|+++|| +||||++..+++++.++.++++++.
T Consensus 28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~------------ 94 (412)
T TIGR02332 28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFAT------------ 94 (412)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 345568899999999999999999999999999999999999 7999999999999999999998864
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+.+.+++.|+++|++.|...|....++.|++|+++ |++++++++...++|.++++.+++
T Consensus 95 ---------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 95 ---------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred ---------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999876 999999999999999999999999
Q ss_pred Hhcc------ccchhhHHHHHHHHHHHHHHHH
Q 008651 174 WIST------NQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 174 ~l~~------~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
++.+ ..|||+.|++.++..++..++.
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 8863 4699999999776655444333
No 34
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.92 E-value=4.9e-23 Score=221.59 Aligned_cols=152 Identities=11% Similarity=-0.016 Sum_probs=127.7
Q ss_pred HHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 008651 17 VTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAP 96 (558)
Q Consensus 17 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (558)
.+.+.+++|+|+++.|++.+.|.+++.++++++|+++|| +||||++..+.++..++.+..+.... .
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~--~----------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLG--S----------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHh--c-----------
Confidence 456788999999999999999999999999999999999 79999999988888777766665310 0
Q ss_pred CCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008651 97 NLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 176 (558)
...+++.+++.|+++|++.+...|...++++|++|+++ |+++++++..+.++|.++++.+..++.
T Consensus 118 ---------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 118 ---------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred ---------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHH
Confidence 01268899999999999999999999999999999987 999999999999999999998887766
Q ss_pred ccc---chhhHHHHHHHHHHHHHH
Q 008651 177 TNQ---GWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 177 ~~~---gw~~~f~i~~~~~~~~~~ 197 (558)
+.. +|+..|.+.++..++..+
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i 206 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGF 206 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHH
Confidence 543 699988887766544333
No 35
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.92 E-value=1.1e-22 Score=216.78 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=122.1
Q ss_pred HHHHHHHhhhhcC---CCchhhhHHHHHHHHHHH---HHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 13 MVSLVTYFHGYMN---FSLTKSATTLTNFTGTAF---LLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 13 ~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~---~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..++..++.++++ .+..+.+...+.+..++. ++++++|+++|| +||||++..+.+++.++.+.+++++.+..
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~- 118 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYET- 118 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchh-
Confidence 4566678888884 556655555555544444 999999999999 79999999999999999999988642100
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
....+...+++.|+++|+|.|+..|...++++|++|+++ |+++.++.+.+.+.|.+
T Consensus 119 ------------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~ 174 (432)
T PRK10406 119 ------------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQL 174 (432)
T ss_pred ------------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHH
Confidence 000134578999999999999999999999999999887 99999999989999988
Q ss_pred HHHHHHHHhc--------cccchhhHHHHHHHHHHHH
Q 008651 167 IGVTFIVWIS--------TNQGWDWSFGVCTIAVLFA 195 (558)
Q Consensus 167 ~g~~~~~~l~--------~~~gw~~~f~i~~~~~~~~ 195 (558)
+++.+...+. ..+|||++|++.++..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 175 LALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 8877665543 2589999999877655443
No 36
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.92 E-value=3.1e-23 Score=218.68 Aligned_cols=367 Identities=13% Similarity=0.099 Sum_probs=237.9
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchh-----hhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTK-----SATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILA 78 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~ 78 (558)
+..+++......++.|+ +++|.+..+ .+++.+.+.+...++.++.|+++|| +|||+.+..+.++..++.+++.
T Consensus 25 ~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 102 (408)
T PRK09874 25 LTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMG 102 (408)
T ss_pred HHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHH
Confidence 44456666667778777 568988665 4888999999999999999999999 7999999999988888888777
Q ss_pred HhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 008651 79 IQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFL 158 (558)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~ 158 (558)
... +++.+++.|++.|++.+ ..+...+++.|.+|+++ |+++.++..
T Consensus 103 ~~~---------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (408)
T PRK09874 103 LAQ---------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLS 148 (408)
T ss_pred HHh---------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHH
Confidence 653 67788999999999865 45778888999998876 999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCcc
Q 008651 159 FSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMA 238 (558)
Q Consensus 159 ~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (558)
...++|.+++|.+++.+.+..+|++.|++.++..++..+......++.+ ++.+++... +
T Consensus 149 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~- 207 (408)
T PRK09874 149 TGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEML------------------H- 207 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhh------------------H-
Confidence 9999999999999999998899999999888765555444333222110 010000000 0
Q ss_pred chhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHH-HHHHHHHHH
Q 008651 239 DQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPI-IVSTLFMNT 317 (558)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 317 (558)
..+..... ++.+.....+.. .........
T Consensus 208 -------------------------~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T PRK09874 208 -------------------------MREVVTSL-------------------------KNPKLVLSLFVTTLIIQVATGS 237 (408)
T ss_pred -------------------------HHHHHHhC-------------------------cCCchHHHHHHHHHHHHHHHHH
Confidence 00000000 000111111110 111111100
Q ss_pred HhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHH
Q 008651 318 CLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSM 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~ 397 (558)
... ....+........... ....+.+.....+..++..+..+++.||+++| +.+..+..+..+++
T Consensus 238 ~~~-~~~~~~~~~~~~~~~~---~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~ 302 (408)
T PRK09874 238 IAP-ILTLYVRELAGNVSNI---AFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLL 302 (408)
T ss_pred HHH-HHHHHHHHHhccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHH
Confidence 000 0011111100000000 00011122223445566777788888888877 34556666666555
Q ss_pred HHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 008651 398 AVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYF 477 (558)
Q Consensus 398 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~ 477 (558)
+.....+ +.+...+..++.|++.+...|...+...+..|++.+|+.+++.+....+|..
T Consensus 303 ~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 361 (408)
T PRK09874 303 IPMSFVQ---------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV 361 (408)
T ss_pred HHHHHhc---------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH
Confidence 5444321 3444555667889999988899889999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008651 478 LSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 478 lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
+|+.+.+.+.+ .. ++...|++.+++.+++++..++.
T Consensus 362 ~gp~~~G~l~~---------~~---g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 362 TGPLMGAAISA---------NY---GFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred hhHHHHHHHHh---------hc---chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998762 21 24456777777777777665543
No 37
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.92 E-value=2.5e-22 Score=218.01 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=121.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCC
Q 008651 25 NFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDD 104 (558)
Q Consensus 25 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (558)
+.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++.+++.++.++++++...
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~--------------------- 109 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGS--------------------- 109 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCc---------------------
Confidence 4556678899999999999999999999999 799999999999999999888875310
Q ss_pred CCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-------
Q 008651 105 ADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST------- 177 (558)
Q Consensus 105 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~------- 177 (558)
....++..++++|+++|++.|+..+....+++|.+|+++ |+++.++.+....+|.++++.++.++..
T Consensus 110 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 183 (502)
T TIGR00887 110 SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLE 183 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 001136789999999999999999999999999999997 9999999999999999999888765421
Q ss_pred ----------------ccchhhHHHHHHHHHHHHHHH
Q 008651 178 ----------------NQGWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 178 ----------------~~gw~~~f~i~~~~~~~~~~~ 198 (558)
.++||+.|.+.++..++..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 184 AAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred cccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 248999998877665544443
No 38
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.92 E-value=1.4e-22 Score=207.76 Aligned_cols=339 Identities=17% Similarity=0.226 Sum_probs=253.9
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
+..++++.....++.|. +++|.++.+.+++.+.+.++..++.++.|+++|| +||||.+..+.++..++.+.+....
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-- 85 (352)
T cd06174 10 LSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFAS-- 85 (352)
T ss_pred HHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhc--
Confidence 44556666667777666 5789999999999999999999999999999999 7999999999999999999888763
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++
T Consensus 86 -------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (352)
T cd06174 86 -------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL 134 (352)
T ss_pred -------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence 67789999999999999999999999999999976 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
|..++|.+++.+.+..+|++.|++.++..++..+...... +...
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----------------------- 178 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLL----------------------- 178 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-----------------------
Confidence 9999999999999989999999998877665555443221 0000
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ 323 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 323 (558)
...+................
T Consensus 179 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~- 198 (352)
T cd06174 179 -----------------------------------------------------------LLALAFFLLSFGYYGLLTYL- 198 (352)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhHHHHHHHHH-
Confidence 00000011111111111111
Q ss_pred ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhH-HHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQ-RIGVGLVLSAVSMAVAAV 402 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~-~~~~g~~l~~i~~l~~~~ 402 (558)
+.+..+..+.+ ....+.......+...++.++.+++.||+++| + .+..+..+..++++....
T Consensus 199 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 199 PLYLQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHH
Confidence 11111100111 11123344555677788888889999998887 4 577888888888777765
Q ss_pred HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 403 VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLV 482 (558)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l 482 (558)
.. +.+...+..++.+++.+...+....+..+..|++.|++.+|+.+....++..+++.+
T Consensus 262 ~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i 320 (352)
T cd06174 262 AP---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL 320 (352)
T ss_pred hc---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 355667788899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008651 483 VEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYL 523 (558)
Q Consensus 483 ~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 523 (558)
.+.+.+ + .++...+++.+++.+++.+..+
T Consensus 321 ~g~l~~---------~---~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 321 AGLLLD---------T---GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHhc---------c---cCcchHHHHHHHHHHHHHHHhe
Confidence 998862 1 1233456677777777666543
No 39
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=210.96 Aligned_cols=387 Identities=11% Similarity=-0.013 Sum_probs=248.6
Q ss_pred hhhhhhHH---HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 7 MSFVANMV---SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 7 ~~~y~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
.+||-..- ...+++.++.++|.+|.|.+.+.+++++.++-.++|.++|| .+.|+.+.+++++..+..+++++++
T Consensus 39 a~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~-- 115 (448)
T COG2271 39 AAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSP-- 115 (448)
T ss_pred HHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhh--
Confidence 34454442 34568888899999999999999999999999999999999 7999999999999999999999975
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+...+.+...++|..+|.-.|.....++.+++.++ ||+..++++.+.|+
T Consensus 116 -------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNi 164 (448)
T COG2271 116 -------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNI 164 (448)
T ss_pred -------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhc
Confidence 77899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHH--HHhccccchhhHHHHHHHHH-HHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccch
Q 008651 164 GSIIGVTFI--VWISTNQGWDWSFGVCTIAV-LFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQ 240 (558)
Q Consensus 164 g~~~g~~~~--~~l~~~~gw~~~f~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (558)
|+.+.|++. +++..+.+||..|++++++. ++++++++..+.+.+.. +-|..+ + ..+++.+
T Consensus 165 GGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GLP~ie----------~----~~~d~~e 227 (448)
T COG2271 165 GGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GLPPIE----------E----YRGDPLE 227 (448)
T ss_pred ccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCCCHH----------H----hhcCchh
Confidence 999999999 99999999999999999874 45555555444321111 111000 0 0001000
Q ss_pred hhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhh-HHHHHHHhhHHHHHHHHHHHHHh
Q 008651 241 LHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQV-EETKILLRMLPIIVSTLFMNTCL 319 (558)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 319 (558)
..+ ++. +.+..+..+.. .+.+ +++...+..+..+....+-+.+.
T Consensus 228 ~~~----------~~~-~~~~ls~~~i~------------------------~~YVL~Nk~iW~la~a~vfvYivR~gi~ 272 (448)
T COG2271 228 IYE----------EEK-ENEGLTAWQIF------------------------VKYVLKNKLIWLLALANVFVYVVRYGIN 272 (448)
T ss_pred hhh----------hhc-cCCCccHHHHH------------------------HHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 000 000 00001111110 0111 12222222222333333333444
Q ss_pred hcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 008651 320 AQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAV 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~ 399 (558)
.+. +.+..+..+++.. ...+...+.-...+.++.+.+++.||+.+.+. . ..-.+.+++..++++.
T Consensus 273 dW~-p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR------~--p~~~i~~~~i~~~~~~ 337 (448)
T COG2271 273 DWG-PLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKGRR------G--PMALIFMLLITASLVL 337 (448)
T ss_pred hhH-HHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhccccc------c--hHHHHHHHHHHHHHHH
Confidence 443 3344444444422 34444555567788899999999999974411 0 1222333333334333
Q ss_pred HHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHH--HHHHHHHhhchhhHHHHHHHHHHHHHH-HH
Q 008651 400 AAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVG--LLDFFYAESSAGMKSLSTAISWCSIAF-GY 476 (558)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~--~~~~~~~~~P~~~rg~~~gi~~~~~~l-g~ 476 (558)
+-.. +..+.+......+..|+. ...|. .-..+.|.+|++..|++.|+..++..+ |.
T Consensus 338 ~w~~-------------------~~~~~~l~~~~l~~iGf~--IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga 396 (448)
T COG2271 338 YWLA-------------------PNGSYLLDAILLFIIGFL--IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA 396 (448)
T ss_pred HHcC-------------------CCccHHHHHHHHHHHHHH--HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence 3321 112344444444444443 33333 224467899999999999999998888 77
Q ss_pred HHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 477 FLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACAS 527 (558)
Q Consensus 477 ~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 527 (558)
.++....+++.+ . .+++..|.++.+.++++.++.....+
T Consensus 397 ~~a~~~~g~i~d---------~---~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 397 ALAGLPLGYIAD---------T---WGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HhcCCcceeeEe---------c---CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 777777776653 2 23445566666666676666555443
No 40
>TIGR00898 2A0119 cation transport protein.
Probab=99.91 E-value=1.8e-22 Score=219.33 Aligned_cols=385 Identities=11% Similarity=0.063 Sum_probs=235.4
Q ss_pred HHhhhhcCCC---chhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 18 TYFHGYMNFS---LTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 18 ~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
..+.+++|++ +.+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.++++++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 4567889999 8999999999999999999999999999 7999999999999999998888764
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
+++.+++.|++.|++.++..+...+++.|.+|+++ |+++.++...+..+|.++++.++.+
T Consensus 179 --------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 179 --------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred --------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999887 9999999999999999999988877
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccccccc
Q 008651 175 ISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTE 254 (558)
Q Consensus 175 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (558)
+.+ ||+.|++.++..++..+..++..+..+....+++ ..+..+.+....+......+++ ......++
T Consensus 239 ~~~---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~---~~~~~~~~------ 305 (505)
T TIGR00898 239 IPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAE---VLSLSLEK------ 305 (505)
T ss_pred hhH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHH---HHhhhhhh------
Confidence 754 9999998877655555444332211110001111 1111122222222111111100 00000000
Q ss_pred ccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeeccccc
Q 008651 255 ILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMD 334 (558)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (558)
+..... ....++... ++++.....+............+.. ...+... .
T Consensus 306 ~~~~~~-----------------------~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~- 353 (505)
T TIGR00898 306 DLSSSK-----------------------KQYSFLDLF----RTPNLRKTTLCLMMLWFTTAFSYYG-LVLDLGN---L- 353 (505)
T ss_pred hhhhcc-----------------------CCCcHHHHh----CChHHHHHHHHHHHHHHHHHHHHHH-Hhccccc---c-
Confidence 000000 000000000 0111111111111100001111100 0111110 0
Q ss_pred ccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008651 335 RNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEH 414 (558)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~ 414 (558)
+.+......+..+..+.+..+.+++.||++|| +.+..++++.+++++......
T Consensus 354 ------~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr-----------~~~~~~~~~~~~~~l~~~~~~---------- 406 (505)
T TIGR00898 354 ------GGNIYLDLFISGLVELPAKLITLLLIDRLGRR-----------YTMAASLLLAGVALLLLLFVP---------- 406 (505)
T ss_pred ------CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHcC----------
Confidence 00111112223444556667778889999888 456777777777776665432
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Q 008651 415 NMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWL 494 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~ 494 (558)
....++.....++.+++.....+..+.+..|.+|++.|++++|+.++...+|+.+++.+.+ +.+
T Consensus 407 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~------ 470 (505)
T TIGR00898 407 ---------VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE------ 470 (505)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH------
Confidence 1122334445556666677777888889999999999999999999999999999998887 321
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 495 ASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 495 ~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
.+....+++++++++++.++.+++ ++++++
T Consensus 471 -------~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~ 500 (505)
T TIGR00898 471 -------KWLFLPLVLFGGLALLAGILTLFL-PETKGV 500 (505)
T ss_pred -------HHHhhHHHHHHHHHHHHHHHHHcC-cCCCCC
Confidence 112234566777777776665543 455443
No 41
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.91 E-value=6.2e-22 Score=208.27 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=134.9
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
.....++. +.+++|+|+++.++..+.+.++..+++++.|+++|| +||||++..+.++..++.+++.++.
T Consensus 38 ~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~--------- 106 (394)
T PRK10213 38 LPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFAN--------- 106 (394)
T ss_pred HHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 33344444 567999999999999999999999999999999999 7999999999999999988887753
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
+++.+++.|+++|++.|...+...+++.|++|+++ |+++.++.....++|..+||.
T Consensus 107 ------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~ 162 (394)
T PRK10213 107 ------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAP 162 (394)
T ss_pred ------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999886 999999999999999999999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHH
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFAT 196 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~ 196 (558)
+++++.+.+|||+.|++.++..++..
T Consensus 163 l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 163 LGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999998776544433
No 42
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.91 E-value=4.1e-23 Score=221.03 Aligned_cols=404 Identities=14% Similarity=0.152 Sum_probs=230.1
Q ss_pred CCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCC
Q 008651 26 FSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDA 105 (558)
Q Consensus 26 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (558)
.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.+++.++.+++.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~----------------------- 123 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF----------------------- 123 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc-----------------------
Confidence 338999999999999999999999999999 79999999999999999988876532
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHhccccchh
Q 008651 106 DGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI---VWISTNQGWD 182 (558)
Q Consensus 106 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~---~~l~~~~gw~ 182 (558)
..+.+.++++|+++|+|.+...+...++++|++|+++ |++++++++...++|.++++.++ +.+.+..+||
T Consensus 124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~ 196 (481)
T TIGR00879 124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196 (481)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence 1245688999999999999999999999999999887 99999999999999999999998 7777788999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccccccch
Q 008651 183 WSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQF 262 (558)
Q Consensus 183 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 262 (558)
+.|++.++..++..+..++.++..+....+++. ....+... .. +....++ .......+
T Consensus 197 ~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~--~~~~~~~-~~~~~~~~----------------- 254 (481)
T TIGR00879 197 IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRV-EEARKSLA-RL--RGTSGED-KELLDELE----------------- 254 (481)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHcCCh-HHHHHHHH-HH--hCCCCCc-HHHHHHHH-----------------
Confidence 999996665554444333322111000000000 00000000 00 0000000 00000000
Q ss_pred hhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeeccccccccccccc
Q 008651 263 RFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNLFGFKV 342 (558)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (558)
..+..... .... ....|+..........+.. +.......+..........++.... .+ .. ++..
T Consensus 255 -~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-g~~~ 318 (481)
T TIGR00879 255 -LIDIKRSI-EKRS-------VQPSWGSLFSSTRRIRRRL---FLGVVLQWFQQFTGINAIMYYSPTI--FE-NA-GVST 318 (481)
T ss_pred -HHHHHHHH-HHhh-------ccccHHHHHhcCchhHHHH---HHHHHHHHHHHHhCCeehHHHHHHH--HH-Hc-CCCc
Confidence 00000000 0000 0000110000000000111 1111111111010000001111100 00 00 1111
Q ss_pred -CCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC
Q 008651 343 -PGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIE 421 (558)
Q Consensus 343 -~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 421 (558)
..........+..+++..+.+++.||++|| +.+..+..++++++++.........+. .
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 377 (481)
T TIGR00879 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----------PLLLIGAAGMAICLFVLGILGASFVTG--S-------- 377 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHHhhcccCC--c--------
Confidence 112333444556677888889999999887 446667777777766665321100000 0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCc
Q 008651 422 PLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNR 501 (558)
Q Consensus 422 ~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~ 501 (558)
....+..++....++.+.......+....+..+..|++.|++++++.++...+|+.+++.+.+.+.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~----------- 446 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI----------- 446 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 000122222222233333333344666677789999999999999999999999999999988775311
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 008651 502 DKLNYFYWLLAGISVLNFGFYLACASWYRY 531 (558)
Q Consensus 502 ~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 531 (558)
++...|++.+++++++.+..+++.++.++
T Consensus 447 -~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 447 -GVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred -CccceehhHHHHHHHHHHHHheecccCCC
Confidence 12344677888888777776665555443
No 43
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.91 E-value=3.3e-22 Score=209.50 Aligned_cols=153 Identities=12% Similarity=0.162 Sum_probs=135.1
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
.....+ +.+++++|.|.++.+++.+.+.+++.+++++.|+++|| +|||+++..+.++..++.++++++.
T Consensus 21 ~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~--------- 89 (382)
T PRK10091 21 GIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSS--------- 89 (382)
T ss_pred HHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 333444 45678999999999999999999999999999999999 7999999999999999999988864
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
+++.+++.|++.|++.+...+....++.|++|+++ |+++++++..+..+|..+||.
T Consensus 90 ------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 90 ------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred ------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999988888899999988775 899999999999999999999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHH
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~ 198 (558)
+++++.+.++||++|++.++..++..+.
T Consensus 146 l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 146 LGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765544443
No 44
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.91 E-value=1.9e-22 Score=211.75 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=131.2
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
....+++++|+|+.+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++.
T Consensus 34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~-------------- 98 (405)
T TIGR00891 34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFAP-------------- 98 (405)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 3346778999999999999999999999999999999999 7999999999999999988887763
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
+++.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.....++|.++++.+++.+
T Consensus 99 -------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 99 -------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred -------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999886 99999999999999999999999998
Q ss_pred ccccc--hhhHHHHHHHHHHHHH
Q 008651 176 STNQG--WDWSFGVCTIAVLFAT 196 (558)
Q Consensus 176 ~~~~g--w~~~f~i~~~~~~~~~ 196 (558)
.+..+ ||+.|++.++..++..
T Consensus 160 ~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 160 VPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHhcCccHHHHHHHHHHHHHHHH
Confidence 87766 9999988665544443
No 45
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.91 E-value=2.5e-22 Score=215.98 Aligned_cols=377 Identities=12% Similarity=0.086 Sum_probs=227.4
Q ss_pred hcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcC
Q 008651 23 YMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQC 102 (558)
Q Consensus 23 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (558)
++|++..+.|++.+.|.+++.++++++|+++|| +|||+++..+.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999 79999999999998888877755421
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc-ch
Q 008651 103 DDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQ-GW 181 (558)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~-gw 181 (558)
.+...+++.|+++|++.+...|....++.|++|+++ |++++++...+.++|.++++.+++++.+.+ ||
T Consensus 129 -----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw 197 (465)
T TIGR00894 129 -----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGW 197 (465)
T ss_pred -----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 145678999999999999999999999999999887 999999999999999999999999999884 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccccccc
Q 008651 182 DWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQ 261 (558)
Q Consensus 182 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (558)
|+.|++.++..++..++++...++.++++++.++.+. +. .+. .. ++ ++ ...+
T Consensus 198 ~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~----i~~-~~--------------~~-----~~-~~~~- 249 (465)
T TIGR00894 198 PMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK--KY----INS-SL--------------QG-----QK-GSTR- 249 (465)
T ss_pred CeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH--HH----HHh-hc--------------cc-----cc-CCCC-
Confidence 9999998877655554444332221111111110000 00 000 00 00 00 0000
Q ss_pred hhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhh-HHHHHHHHHHHHHhhcccceeeeeccccccccccc
Q 008651 262 FRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRM-LPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNLFGF 340 (558)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (558)
...+|+. ....+..+.. +..+.....++....+.+.++ .+..+.+.
T Consensus 250 ----------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l-~~~~g~s~----- 296 (465)
T TIGR00894 250 ----------------------QSLPIKA-----IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI-SWVLRVSG----- 296 (465)
T ss_pred ----------------------CCCCHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCh-----
Confidence 0011111 0111111111 112222222222333333332 22112221
Q ss_pred ccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC
Q 008651 341 KVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSI 420 (558)
Q Consensus 341 ~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 420 (558)
...+....+..+..+++..+.+++.||+.+|...+ .....++..+..+...+...+....
T Consensus 297 -~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 356 (465)
T TIGR00894 297 -KENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS---LTAARKIFNGIGGLGPGIFAYALPY---------------- 356 (465)
T ss_pred -HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 11234445556777888889999999987663211 0011112222221111111111110
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCC
Q 008651 421 EPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLN 500 (558)
Q Consensus 421 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~ 500 (558)
...+..+.+..+.+.+.+.+...+..+....+..|+ .+|.++++.++...+|+.+++.+.+.+.+ ...
T Consensus 357 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~---------~~~ 424 (465)
T TIGR00894 357 --LSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILS---------QDS 424 (465)
T ss_pred --cCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeC---------CCC
Confidence 011233333344444444555555555566666766 89999999999999999999988886642 111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 008651 501 RDKLNYFYWLLAGISVLNFGFYLA 524 (558)
Q Consensus 501 ~~~~~~~f~~~~~~~~v~~~~~~~ 524 (558)
.+.+...|.+.+++.+++.+++..
T Consensus 425 ~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 425 KNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred chHHHHHHHHHHHHHHHHHHHeee
Confidence 123555677777777777665543
No 46
>PRK09952 shikimate transporter; Provisional
Probab=99.91 E-value=1.2e-21 Score=209.09 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=116.5
Q ss_pred HHHHhhhhc--CCCchhhhHHHH-----HHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 16 LVTYFHGYM--NFSLTKSATTLT-----NFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 16 l~~yl~~~~--~~s~~~~~~~~~-----~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
.+.++.+++ +.++. .+++.+ ...++..+++++.|+++|| +|||++++++.+++.++.+++++++.+...
T Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-- 120 (438)
T PRK09952 45 AALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTI-- 120 (438)
T ss_pred HHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHH--
Confidence 344566665 67766 455532 3345566788888999999 799999999999999999999987521100
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG 168 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 168 (558)
.......+++.|+++|++.|+..+....++.|++|+++ |++..+....+..+|.+++
T Consensus 121 -----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 121 -----------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred -----------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHH
Confidence 00012358889999999999999999999999999986 9999999999999999988
Q ss_pred HHHHHHhc--------cccchhhHHHHHHHHHHH
Q 008651 169 VTFIVWIS--------TNQGWDWSFGVCTIAVLF 194 (558)
Q Consensus 169 ~~~~~~l~--------~~~gw~~~f~i~~~~~~~ 194 (558)
..+..++. +.+|||++|++.++..++
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 77776654 358999999987765433
No 47
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.91 E-value=1e-21 Score=205.14 Aligned_cols=330 Identities=13% Similarity=0.031 Sum_probs=218.3
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
+.+.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.+++..+.
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~---------------- 91 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSN---------------- 91 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 45678999999999999999999999999999999999 7999999999999999998888764
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST 177 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 177 (558)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..+||.+++++.+
T Consensus 92 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 92 -----------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred -----------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999876 9999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccc
Q 008651 178 NQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILK 257 (558)
Q Consensus 178 ~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 257 (558)
..+||+.|++.++..++..+......++.+.++. +++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------------------------------- 194 (385)
T TIGR00710 155 WLSWHAIFAFLSLAGILLSALIFFILPETLPYEA-RIQIST--------------------------------------- 194 (385)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cCCHHH---------------------------------------
Confidence 8999999998777655554444333222111000 000000
Q ss_pred cccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccccc
Q 008651 258 RTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNL 337 (558)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
...+..... ++++.....+........+....... +.+..+..+.+.
T Consensus 195 -----~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~-- 241 (385)
T TIGR00710 195 -----YFETFLLLL-------------------------KSKMFWGYALIYGASFGGFFAFFSGA-PFVYIDIMGVSP-- 241 (385)
T ss_pred -----HHHHHHHHH-------------------------cCchhHHHHHHHHHHHHHHHHHHHcC-hHHHHHHcCCCH--
Confidence 000000000 01111111111111111111111111 111111111111
Q ss_pred cccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 008651 338 FGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMV 417 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~ 417 (558)
...+.+.....+..+++.++.+++.||+++| +.+..+..++.++.++.......
T Consensus 242 ----~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~----------- 295 (385)
T TIGR00710 242 ----SVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----------SLLRMGLILFAVSAVLLEITAIL----------- 295 (385)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 1122333444566778888889999988877 44556666666665555433200
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008651 418 DSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIV 486 (558)
Q Consensus 418 ~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i 486 (558)
...+....+...++.+++.+...+....+..+..| +.+++++++.++....++.+.+.+.+..
T Consensus 296 -----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 296 -----GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00123334445677888888888888888888877 5689999999888776666666665543
No 48
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.6e-22 Score=212.05 Aligned_cols=401 Identities=10% Similarity=0.055 Sum_probs=250.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhH
Q 008651 31 SATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQV 110 (558)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (558)
-+.++++|.++.++++.++|+++|| +|||..+.++.++..++.+++.++...+ +.
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~------------------------~~ 116 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAP------------------------SF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhh------------------------hH
Confidence 3467889999999999999999999 7999999999999999999988886533 78
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHhccccchhhHHHHH
Q 008651 111 AILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI--VWISTNQGWDWSFGVC 188 (558)
Q Consensus 111 ~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~--~~l~~~~gw~~~f~i~ 188 (558)
.+++++|++.|+..|......+-++.|+.|++. ||..-.....+.++|..+|..++ ..+.+.-.|++.+.++
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 899999999999999999999999999999997 99999999999999999996665 3445566799999988
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh-hcccc-ccccccccccccch--hh
Q 008651 189 TIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE-IHDRE-AGLDTEILKRTDQF--RF 264 (558)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~--~~ 264 (558)
.+..++.++...+ .||+|+++.. ++++| +.+..+.+...++. +.
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~ 238 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEI 238 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHH
Confidence 8776666555433 2333333333 22222 11121111111100 00
Q ss_pred hhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeee-eccc-cccccccccc
Q 008651 265 LDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQ-QSTT-MDRNLFGFKV 342 (558)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 342 (558)
.+...+.+.+... ......+.+..+++ ..++.+...+.+. ..+|..+.... ++.. +-.+. |+..
T Consensus 239 e~~~~e~~~~~~~----~~~~~sl~~~~~~~-~lR~~~~i~~~v~--------~~qq~sGi~ai~~Yst~i~~~a-G~~~ 304 (485)
T KOG0569|consen 239 EEMLREIEEEELE----KKKQISLRQLLKNP-TLRRPLLIGIVVS--------FAQQFSGINAIFFYSTSIFKTA-GFTP 304 (485)
T ss_pred HHHHHHHHHhccc----cccCCcHHHHhcCc-chhHHHHHHHHHH--------HHHHhcCcceeHHHHHHHHHHc-CCCH
Confidence 0000000000000 00000110000000 1111111111111 11222221111 1100 00000 1111
Q ss_pred C-CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC
Q 008651 343 P-GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIE 421 (558)
Q Consensus 343 ~-~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 421 (558)
. ..+.........++.+....++.||++|| ..+..++.++.+..+++..........
T Consensus 305 ~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~~~~----------- 362 (485)
T KOG0569|consen 305 EEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLSNSF----------- 362 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 1 22334444566677888889999999999 567778887777777666553221110
Q ss_pred CccchhHHHHHHHHHHHHHHHH-HhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCC
Q 008651 422 PLPMSVFWLGFQYAIFGAADMF-TLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLN 500 (558)
Q Consensus 422 ~~~~~~~~~i~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~ 500 (558)
. +.-.+..+...++..++... ..|..+-+..|.+|++.|+.++++..+.+.+.+++-....+.+.+ .++
T Consensus 363 ~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~---------~~g 432 (485)
T KOG0569|consen 363 G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN---------VIG 432 (485)
T ss_pred h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hhc
Confidence 0 01112223344444444333 358888899999999999999999999999999998888887763 122
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccccc
Q 008651 501 RDKLNYFYWLLAGISVLNFGFYLACASWYRYKEVEIKQVEDCSD 544 (558)
Q Consensus 501 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (558)
. ++|..+.+.+++..+..++..+++|+|+.++..++.+++
T Consensus 433 ~----~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 433 P----YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred c----hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 1 557888999999999999999999999887765554433
No 49
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.91 E-value=1.3e-21 Score=209.55 Aligned_cols=152 Identities=12% Similarity=0.090 Sum_probs=124.2
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
+..+|+.++ |+|+.+.+++.+.+.++..++++++|+++|| +|||++++++.++..++.+++++....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 9999999999999999999999999999999 799999999999999988888775310
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH-HHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI-IGVTFIV 173 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~g~~~~~ 173 (558)
..+.+.+++.|++.|++.|...+.....+.|++|+++ |++++++++.+.++|.. .+|.++.
T Consensus 117 ------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 117 ------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred ------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1146678899999999999998988899999999876 99999999999999874 4555443
Q ss_pred HhccccchhhHHHHHHHHHHHHHH
Q 008651 174 WISTNQGWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~~~ 197 (558)
.+....+||+.|++.++..++..+
T Consensus 179 ~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 179 GMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH
Confidence 443445999999997766554433
No 50
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.90 E-value=1.2e-21 Score=206.12 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=122.6
Q ss_pred HhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 008651 19 YFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNL 98 (558)
Q Consensus 19 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (558)
.+.+++|.++.+.+++.+.|.+.+.++.+++|+++|| +||||+++++.+++.++.+.++++.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~----------------- 89 (393)
T PRK11195 28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGI----------------- 89 (393)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHH-----------------
Confidence 3467999999999999999999999999999999999 7999999999999998888776643
Q ss_pred cCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008651 99 VNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN 178 (558)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~ 178 (558)
+ .++.|+++|++.+...|+..+++.|.+|+++ |+++.++.....++|.++||.++|++.+.
T Consensus 90 ----------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 90 ----------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred ----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2678999999999999999999999999886 99999999999999999999999999874
Q ss_pred cchhhHHHHHHHHHHHHH
Q 008651 179 QGWDWSFGVCTIAVLFAT 196 (558)
Q Consensus 179 ~gw~~~f~i~~~~~~~~~ 196 (558)
.|+..+.+.+...+++.
T Consensus 151 -~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 151 -HAEAALAVCALIYLLAA 167 (393)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 47777776665544443
No 51
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.90 E-value=5.4e-22 Score=214.99 Aligned_cols=145 Identities=12% Similarity=0.187 Sum_probs=131.5
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..+..++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.++..++.++++++.
T Consensus 40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------ 106 (496)
T PRK03893 40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAP------------ 106 (496)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 344456778999999999999999999999999999999999 7999999999999999999888864
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+++.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+.+
T Consensus 107 ---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 107 ---------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999886 999999999999999999999999
Q ss_pred HhccccchhhHHHHHHHHH
Q 008651 174 WISTNQGWDWSFGVCTIAV 192 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~ 192 (558)
++.+.++||+.|++..+..
T Consensus 166 ~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 166 LVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHhccCCHHHHHHHHHHHH
Confidence 9999999999998754443
No 52
>TIGR00895 2A0115 benzoate transport.
Probab=99.90 E-value=7.6e-22 Score=206.42 Aligned_cols=361 Identities=13% Similarity=0.046 Sum_probs=221.2
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
.+..+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++.+++.++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~------------ 103 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALAT------------ 103 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHcc------------
Confidence 344556778899999999999999999999999999999999 7999999999999888888877753
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.....++|..+++.+++
T Consensus 104 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 104 ---------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred ---------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999876 999999999999999999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccc
Q 008651 174 WISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDT 253 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (558)
++.+..||++.|++.++...+..++.....++.+....++++ +...+....... +....++ .....
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~------------~~~~~ 228 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAP-QMQAEAQ------------SALPE 228 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHHHH-hcccccc------------ccccc
Confidence 999999999999987654443333333222221110000000 000000000000 0000000 00000
Q ss_pred cccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccc
Q 008651 254 EILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTM 333 (558)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (558)
++ .++....+ .++.....+ ..++.....+........+.......+ .+... .+.
T Consensus 229 ~~---~~~~~~~~--------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g~ 282 (398)
T TIGR00895 229 QK---ATQGTKRS--------------------VFKALFQGK-TARITVLLWLLYFMLLVGVYFLTNWLP-KLMVE-LGF 282 (398)
T ss_pred cc---cccchhhH--------------------HHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-cCC
Confidence 00 00000000 000000000 011111111111111111111111111 11111 111
Q ss_pred cccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008651 334 DRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVE 413 (558)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~ 413 (558)
+ ....+.......+..+++.++.+++.||+++|. ...+..+.++.........
T Consensus 283 ~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--------- 335 (398)
T TIGR00895 283 S------LSLAATGGALFNFGGVIGSIIFGWLADRLGPRV------------TALLLLLGAVFAVLVGSTL--------- 335 (398)
T ss_pred C------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH------------HHHHHHHHHHHHHHHHHHh---------
Confidence 1 111223334445666778888888888887651 2233333333333322211
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008651 414 HNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIV 486 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i 486 (558)
.+.+......++.+++.+...+..+.+..+..|++.||+++|+.+....+|..+++.+.|.+
T Consensus 336 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 -----------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -----------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 13344556677888998888899999999999999999999999999999999999988754
No 53
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.90 E-value=1.5e-21 Score=205.35 Aligned_cols=362 Identities=10% Similarity=0.045 Sum_probs=211.0
Q ss_pred cchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHH-HHHHHhhHHHHHhhcccCchHHHH-HHHHHHHHHHHHHHHh
Q 008651 3 GLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTG-TAFLLALFGGFISDTYLSRFKTCV-LFGCIELLGLAILAIQ 80 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~~~~~~~~~~~ 80 (558)
++.+++.......++.|+.+++|.|.++.|+..+.+.+ +..+.++++|+ +|| +||||.++ .+.++..++..+.+++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHh
Confidence 45667777778889999999999999999999877655 55555655666 999 79998754 4555555666666665
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhh--hhhHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKF--SSFFNWFL 158 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r--~~~~~~~~ 158 (558)
. +++.+++.+.+.+...+...|....+..|..++++ | +...++.+
T Consensus 103 ~---------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 149 (393)
T PRK15011 103 R---------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLR 149 (393)
T ss_pred h---------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHH
Confidence 3 45555544444444445667788888888765543 3 34457888
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCcc
Q 008651 159 FSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMA 238 (558)
Q Consensus 159 ~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (558)
...++|.++||.+++++.+++|||..|++.++..++..+......|+.++++++. +.+.
T Consensus 150 ~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 208 (393)
T PRK15011 150 AQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA---------------------TGTL 208 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc---------------------cccc
Confidence 8999999999999999999999999999887765555444433332211111000 0000
Q ss_pred chhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHH
Q 008651 239 DQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTC 318 (558)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (558)
+. . ..++ ++. .............+...
T Consensus 209 ---------------~~--------------~---------------------~~~~-~~~--~~~~~~~~~~~~~~~~~ 235 (393)
T PRK15011 209 ---------------EA--------------P---------------------RRNR-RDT--LLLFVICTLMWGTNSLY 235 (393)
T ss_pred ---------------cc--------------c---------------------cccc-ccH--HHHHHHHHHHHHHHHHH
Confidence 00 0 0000 000 00111111111111111
Q ss_pred hhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHH
Q 008651 319 LAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMA 398 (558)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l 398 (558)
.... +.+.++..+.+.. ..+.+.....+..+++..+.+++.||+++| +.+..+.....+.+.
T Consensus 236 ~~~~-p~~l~~~~~~~~~------~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~ 297 (393)
T PRK15011 236 IINM-PLFIINELHLPEK------LAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----------FLMRVAAVAGVCFYA 297 (393)
T ss_pred HHHH-HHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHH
Confidence 1111 1122111111111 111222223344456677889999999887 334444444443333
Q ss_pred HHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 008651 399 VAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFL 478 (558)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~l 478 (558)
..... .+.++.+...++.+++.+...+....+..+..|++ +|+++++.+...++|..+
T Consensus 298 ~~~~~---------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 298 GMLMA---------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWII 355 (393)
T ss_pred HHHHH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHH
Confidence 32221 12333444555566666666666667777888865 999999998888999999
Q ss_pred HHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008651 479 SSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 479 g~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
++.+.|.+.+ . .++...|++.+++++++.+..++.
T Consensus 356 g~~l~G~i~~---------~---~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 356 AGSLAGIVAE---------I---WNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHH---------H---hhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998862 1 124445666666666665555543
No 54
>PRK15075 citrate-proton symporter; Provisional
Probab=99.90 E-value=1.5e-21 Score=208.06 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=117.2
Q ss_pred HHHHHHhhhhcCCCchhhhHHH-HHHHHH-----HHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTL-TNFTGT-----AFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~-~~~~~~-----~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
.+..+.+.++++.++.+.+++. +...++ ..+++++.|+++|| +||||.++.+.+++.++.+++++++....+.
T Consensus 35 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~ 113 (434)
T PRK15075 35 GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATIG 113 (434)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556688899999888866544 322222 23678899999999 7999999999999999999999874210000
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
......++++|+++|++.|...+....+++|++|+++ |+++++++....++|..+
T Consensus 114 -------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 114 -------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVF 168 (434)
T ss_pred -------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHH
Confidence 0001256889999999999999999999999999987 999999999888888888
Q ss_pred HHHHHHHhc--------cccchhhHHHHHHH
Q 008651 168 GVTFIVWIS--------TNQGWDWSFGVCTI 190 (558)
Q Consensus 168 g~~~~~~l~--------~~~gw~~~f~i~~~ 190 (558)
|+.+++.+. +.+|||++|++..+
T Consensus 169 g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 887777652 56899999998654
No 55
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.90 E-value=3.5e-21 Score=203.80 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=137.0
Q ss_pred hhhhhhHHHHHH--------HhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 008651 7 MSFVANMVSLVT--------YFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILA 78 (558)
Q Consensus 7 ~~~y~~~~~l~~--------yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~ 78 (558)
+.+|+....++. .+.+++|.+..+.++.++.|.+++.++++++|+++|| +||||+++.+.+++.++.++++
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~ 99 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATL 99 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHH
Confidence 455555444433 3567899999999999999999999999999999999 7999999999999999999888
Q ss_pred HhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 008651 79 IQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFL 158 (558)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~ 158 (558)
++. +.+.++++|+++|++.+...+....++.|.+|+++ |++.+++..
T Consensus 100 ~a~---------------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 146 (413)
T PRK15403 100 FTT---------------------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIIT 146 (413)
T ss_pred HcC---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence 764 67789999999999998777777888999999876 899999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 159 FSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 159 ~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
...++|..+||.+++.+.+..|||+.|++.++..+++.+..
T Consensus 147 ~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 147 SIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988999999999887766555443
No 56
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.90 E-value=9.6e-22 Score=205.86 Aligned_cols=350 Identities=9% Similarity=0.062 Sum_probs=221.0
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
+..++...+...+|.|++ ++|.|..++|++.+.+.++..+++++.|+++|| +||||.+..+.++..++.+.++++.
T Consensus 17 ~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~~-- 92 (381)
T PRK03633 17 LLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLMV-- 92 (381)
T ss_pred HHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 444555666677777764 789999999999999999999999999999999 7999999999999999998888763
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+++.+++.|+++|++.+...+...+.+.+..++++ |++++++++...++
T Consensus 93 -------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 141 (381)
T PRK03633 93 -------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYL 141 (381)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence 67889999999999999998888888888888765 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
|..+||.+++.+.+...|+..+... ..... .+..+..+. ++++++++ +.
T Consensus 142 g~~~g~~~~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~--------------------~~------- 190 (381)
T PRK03633 142 GTVLGQLLVSKVSTELMSVLPWVTG-LVLAA-ILPLLFTRI--LNQQAENH--------------------DS------- 190 (381)
T ss_pred HHHHHHHHHhcccccccchHHHHHH-HHHHH-HHHHHHhcc--cCCCCCCC--------------------CC-------
Confidence 9999999999987754443333222 11111 111111110 00000000 00
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ 323 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 323 (558)
+ +.. ... ++++..............+...+...+
T Consensus 191 ----------------~--~~~---~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lp 224 (381)
T PRK03633 191 ----------------T--SIW---PML-------------------------KLRQARLGVNGCIISGIVLGSLYGLMP 224 (381)
T ss_pred ----------------C--CHH---HHH-------------------------HhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000 000000000001111111111111111
Q ss_pred ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVV 403 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~ 403 (558)
. +..+ .+.+.. ..+.+.....+..+++....+++.||+++| +.+..+..+.+++++...
T Consensus 225 ~-~~~~-~g~s~~------~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-----------~~l~~~~~~~~~~~~~~~-- 283 (381)
T PRK03633 225 L-YLNH-QGMSDA------SIGFWMALLVSAGILGQWPIGRLADRFGRL-----------LVLRVQVFVVILGSIAML-- 283 (381)
T ss_pred H-HHHH-cCCCHH------HHHHHHHHHHHHHHHHHhhhHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHh--
Confidence 1 1111 111111 112233344456667777788888888877 445556666665544332
Q ss_pred HHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 404 ETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVV 483 (558)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~ 483 (558)
. .. ......++.+++.....|..+..+.+..|++.++...+..++..++|+.+++.+.
T Consensus 284 ~--------------------~~--~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 284 S--------------------QA--AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred h--------------------hH--HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01 1223445667777777888889899999998888888888888899999999999
Q ss_pred HHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHH
Q 008651 484 EIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFG 520 (558)
Q Consensus 484 ~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 520 (558)
|.+.+.. ++.+.|.+.+.+.++..+
T Consensus 342 G~l~~~~------------g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 342 AMLMQNY------------SDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHh------------CccHHHHHHHHHHHHHHH
Confidence 9886311 133445666665554443
No 57
>PRK03699 putative transporter; Provisional
Probab=99.90 E-value=3.1e-21 Score=202.95 Aligned_cols=347 Identities=11% Similarity=0.132 Sum_probs=221.9
Q ss_pred HHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 008651 17 VTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAP 96 (558)
Q Consensus 17 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (558)
.+.+.+++|+|.++.+++.+.+.+++.++++++|+++|| +||||++..+.++..++.++++++.
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~--------------- 93 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSH--------------- 93 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence 345678999999999999999999999999999999999 7999999999999999998888753
Q ss_pred CCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008651 97 NLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 176 (558)
+++.+++.|+++|++.|...+...+++.|.+|+++ |+++++..+...++|+.++|.+.+++.
T Consensus 94 ------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 94 ------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred ------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999998876 999999988888999999998888765
Q ss_pred -cccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccc
Q 008651 177 -TNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEI 255 (558)
Q Consensus 177 -~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (558)
+..|||+.|.+.++..++..++.+..+ .++ ++++++ .++.
T Consensus 156 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~--~p~-~~~~~~------------------~~~~------------------ 196 (394)
T PRK03699 156 ARSIEWYWVYACIGLVYVAIFILTLFSE--FPA-LGKHAP------------------KADK------------------ 196 (394)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhcC--Ccc-ccccCc------------------cccC------------------
Confidence 467999999987766554443333211 110 000000 0000
Q ss_pred cccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccc
Q 008651 256 LKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDR 335 (558)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (558)
+. .+..|. .+.....+..++.....+....+.+.+. .+..+++.
T Consensus 197 ----~~----------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~~g~s~ 240 (394)
T PRK03699 197 ----PV----------------------AKEKWG---------IGVLFLAIAALLYILAQLTFISWVPEYA-QKKFGMSL 240 (394)
T ss_pred ----cc----------------------ccccCC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCh
Confidence 00 000110 0111111111111111122222222222 11111221
Q ss_pred cccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008651 336 NLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHN 415 (558)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~ 415 (558)
...+.+.....+...++.++.+++.||+++| +.+.....+..+.+++....
T Consensus 241 ------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----------~~l~~~~~~~~~~~~~~~~~------------ 291 (394)
T PRK03699 241 ------EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----------RILTVLAGLALVLMYLFVNT------------ 291 (394)
T ss_pred ------HHhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----------hHHHHHHHHHHHHHHHHHHc------------
Confidence 1123333344556678888889999888777 33444444444443333321
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 008651 416 MVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLA 495 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 495 (558)
.+..+..+..++.|++.+...+....+..+..|++ +++..+.......+|..+++.+.+.+.+..
T Consensus 292 ---------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~----- 356 (394)
T PRK03699 292 ---------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHF----- 356 (394)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-----
Confidence 13334444566777777777777777777777755 567778877888899999999999886321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008651 496 SNNLNRDKLNYFYWLLAGISVLNFGFYL 523 (558)
Q Consensus 496 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~ 523 (558)
+ +...++..+++++++.+...
T Consensus 357 ----g---~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 357 ----G---LQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred ----C---chhhhhhhHHHHHHHHHHHH
Confidence 1 22345556666655554433
No 58
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.90 E-value=6.4e-21 Score=201.16 Aligned_cols=373 Identities=12% Similarity=0.044 Sum_probs=226.1
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
.++.+....+++.++ +++|.|.++.+++.+.+.++..++.++.|+++|| +||||++..+..+..++.+++.....
T Consensus 26 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~--- 100 (402)
T TIGR00897 26 MTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGL--- 100 (402)
T ss_pred HHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 344555666778887 6789999999999999999999999999999999 79999999999998888765533210
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
...+++.+++.|++.|+|.+...+...+.+.+.+|+++ |++++++++...++|.
T Consensus 101 --------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 154 (402)
T TIGR00897 101 --------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGI 154 (402)
T ss_pred --------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 01156778889999999998888888888899988876 9999999999999996
Q ss_pred -HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 008651 166 -IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEI 244 (558)
Q Consensus 166 -~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (558)
++||.+++++.+..||+..+|......++..++.++..++. . +|+.++ .+++
T Consensus 155 ~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~------------------~~~~------- 207 (402)
T TIGR00897 155 GVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDI-F-TPQHMQ------------------TREK------- 207 (402)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCC-C-Cccccc------------------CCcc-------
Confidence 68999999998888977666654433333333222222111 0 111000 0000
Q ss_pred ccccccccccccccccchhhhh-HhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc
Q 008651 245 HDREAGLDTEILKRTDQFRFLD-RAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ 323 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 323 (558)
.. +..+ ..... ++++.....+..++....++......+
T Consensus 208 -----------~~-----~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p 246 (402)
T TIGR00897 208 -----------FS-----ELGKAATILF-------------------------TNPNVLLGGMVRIINTIGLFGFAVFLP 246 (402)
T ss_pred -----------hh-----hHHHHHHHHH-------------------------cChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00000 111111111111111122222222222
Q ss_pred ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVV 403 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~ 403 (558)
. +..+ .+++.. ....+.....+..+++.+..+++.||+++|+. ....+.+.++++.+.....
T Consensus 247 ~-~~~~-~g~s~~------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----------~~~~~~l~~~~~~~~l~~~ 308 (402)
T TIGR00897 247 M-FVAE-LGFSTS------EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT----------VRWFGGVGCGIFTLALYYI 308 (402)
T ss_pred H-HHHH-cCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH----------HHHHHHHHHHHHHHHHHHH
Confidence 2 2221 111111 11223334456778888899999999887621 1122333333332222221
Q ss_pred HHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 404 ETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVV 483 (558)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~ 483 (558)
.. ....+.+...+..++.|++.....+. .....+. +++.||+++|+.++...+|+.+++.+.
T Consensus 309 ~~----------------~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 309 PQ----------------HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred HH----------------ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00113444455666777776665443 3444454 456899999999999999999999999
Q ss_pred HHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008651 484 EIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 484 ~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
+.+.+.. ++...+++.+++.++..+...+.
T Consensus 371 g~l~~~~------------g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 371 VLFIGFF------------GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHhhc------------chHHHHHHHHHHHHHHHHHHHHh
Confidence 9886321 23445677887777777766554
No 59
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.90 E-value=1.3e-21 Score=210.89 Aligned_cols=148 Identities=7% Similarity=0.037 Sum_probs=121.8
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
.++.+++|+|..+.+++.+.+.+++.++++++|+++|| +|||+++..+.++..++.++++++.
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~---------------- 122 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVS---------------- 122 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 47788999999999999999999999999999999999 7999999999999988888887764
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS- 176 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~- 176 (558)
+.+.+++.|+++|++.+...+ ...+++|++|+++ |++++++.+...++|..+++.+.+.+.
T Consensus 123 -----------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~ 184 (476)
T PLN00028 123 -----------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFP 184 (476)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999886543 5567899999886 999999998888888888766665442
Q ss_pred ---c-----ccchhhHHHHHHHHHHHHHHHHH
Q 008651 177 ---T-----NQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 177 ---~-----~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+ ..|||+.|++.++..++..+..+
T Consensus 185 ~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 185 LIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 25899999998876555444333
No 60
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.90 E-value=4.8e-21 Score=201.24 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=135.3
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
+++.....+| .+.+++|.|..+.++..+.+.++..+++++.|+++|| +||||.++.+.++..++.+++..+.
T Consensus 18 ~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~------ 89 (392)
T PRK10473 18 GIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAE------ 89 (392)
T ss_pred HHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhC------
Confidence 3333344444 5567899999999999999999999999999999999 7999999999999999988887753
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...++|..+
T Consensus 90 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~ 142 (392)
T PRK10473 90 ---------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVL 142 (392)
T ss_pred ---------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999886 999999999999999999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 168 GVTFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 168 g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
+|.+++++.+..+|++.|++.++..++..++.
T Consensus 143 ~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 143 APVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999998877655544443
No 61
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.90 E-value=5.6e-21 Score=199.37 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=137.2
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
+.....+.++.+. +++|+|+.+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++..++.++.
T Consensus 6 ~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~------ 77 (377)
T PRK11102 6 AIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ------ 77 (377)
T ss_pred HHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc------
Confidence 3334445566554 6799999999999999999999999999999999 7999999999999999999888763
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...++|..+
T Consensus 78 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 130 (377)
T PRK11102 78 ---------------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLL 130 (377)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999876 999999999999999999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 168 GVTFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 168 g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
+|.+++.+.+.++|++.|++.++..++..+..
T Consensus 131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 131 APIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999999998999999998776655554443
No 62
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.90 E-value=5.2e-22 Score=206.04 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=134.4
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
...+++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+.++.+.++..++.++++++.
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------- 81 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST------------- 81 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence 34467889999999999999999999999999999999999 7999999999999999999988864
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH-HHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV-TFIV 173 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~-~~~~ 173 (558)
+.+.+++.|++.|++.+...+...+++.|++|+++ |++++++.....++|.+++| .+++
T Consensus 82 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 82 --------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred --------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence 67789999999999999999999999999999886 99999999999999999999 5777
Q ss_pred HhccccchhhHHHHHHHHHHHHHHHH
Q 008651 174 WISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
.+.+..+||+.|++.++..++..++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (379)
T TIGR00881 142 GIAELYSWHWVFIVPGIIAIIVSLIC 167 (379)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 78888899999998776655444333
No 63
>PRK11043 putative transporter; Provisional
Probab=99.90 E-value=5e-21 Score=201.74 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=137.1
Q ss_pred hhhhhhHHHHHHH--hhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 7 MSFVANMVSLVTY--FHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 7 ~~~y~~~~~l~~y--l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
.++++...++|.+ +++++|.|+++.++..+.+.++..++.+++|+++|| +|||+.+..+.++..++.+++.++.
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--- 92 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE--- 92 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc---
Confidence 4455555555544 778999999999999999999999999999999999 7999999999999988888887753
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
+.+.+++.|+++|+|.+...+...+++.|.+|+++ +++.++......++|
T Consensus 93 ------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 93 ------------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALS 142 (401)
T ss_pred ------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHH
Confidence 67788999999999998888888899999998875 888899988889999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 165 SIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
..++|.+++++.+..|||+.|++.++..++..+..+
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776555544433
No 64
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.90 E-value=2.5e-23 Score=217.14 Aligned_cols=365 Identities=33% Similarity=0.522 Sum_probs=239.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccC
Q 008651 60 FKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQF 139 (558)
Q Consensus 60 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~ 139 (558)
+|+++++.+++.+|.+++.+++..+.. .++.+...++++.+++++|.|+.+|+..++++|++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~------------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~ 62 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL------------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQY 62 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCS
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh------------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHh
Confidence 478999999999999998888753322 12335678999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhccccccc-CCCCChhHH
Q 008651 140 DERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHN-VPKGSPIIR 218 (558)
Q Consensus 140 ~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 218 (558)
+++++ .+|.++|+++|++.|+|+.+++.+.+++.+++||.+.|+++++..++++++++..+++++.+ +|.+++..+
T Consensus 63 ~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~ 139 (372)
T PF00854_consen 63 DEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTN 139 (372)
T ss_dssp STTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S-
T ss_pred cccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccch
Confidence 98742 35999999999999999999999999999999999999999999999999999998888776 666777666
Q ss_pred -HHHHHHHHHhhCCCCCCCccchhhhhccc-cccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcc-cchhh
Q 008651 219 -ILQVFVAAIHNRNLPKPEMADQLHEIHDR-EAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRL-CTVTQ 295 (558)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 295 (558)
...+.....+++....|....++...... +..... . .....+..... .. ....|+. +.+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~--~~--------~~~~~~~~~~~~~ 203 (372)
T PF00854_consen 140 FIKLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIF----G--IIVFIRAAVIF--FP--------EIFFWALFCQVQR 203 (372)
T ss_dssp -SHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCC----C--CCCHHHHHHHH--CC--------CHHHHTTTSSTTT
T ss_pred hHHHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhh----h--hhhhccchhhh--hh--------hhhhcccCCccce
Confidence 45555556665555444332222221100 000000 0 00000000000 00 0001111 22334
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccccccc-cccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhc
Q 008651 296 VEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNLFG-FKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKIT 374 (558)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~ 374 (558)
+++.+.+.+.+..+.....++..+.+...+...+...++..+++ +.+|++++..++++..++..|+.+++++++.|+
T Consensus 204 ~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-- 281 (372)
T PF00854_consen 204 VEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-- 281 (372)
T ss_dssp HHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--
T ss_pred eeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--
Confidence 45556666666666666667677666666677777777777777 899999999999999999999999999999884
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008651 375 GIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYA 454 (558)
Q Consensus 375 ~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~ 454 (558)
+..++...++.+|++++.+++++....+.++.......+ ..+.+|.++.+++..++|.+..+...+..++
T Consensus 282 --~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~ 351 (372)
T PF00854_consen 282 --GIQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYE 351 (372)
T ss_dssp --------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred --cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 234678899999999999999998887765544333333 2344777799999999999999999898888
Q ss_pred hhchhhHHHHHHHHHHHHH
Q 008651 455 ESSAGMKSLSTAISWCSIA 473 (558)
Q Consensus 455 ~~P~~~rg~~~gi~~~~~~ 473 (558)
.+|++..+.++|++.....
T Consensus 352 ~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 352 FAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp HTTTT-SSSSTHHHHHHH-
T ss_pred hhHHhhhHHHHHHHHHHhc
Confidence 8888888888888776543
No 65
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.89 E-value=1.5e-21 Score=207.17 Aligned_cols=381 Identities=12% Similarity=0.017 Sum_probs=219.8
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
+-.++++...++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||+++++..+..++..........
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~ 99 (420)
T PRK09528 21 FFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFA 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666778899999999999999999999999999999999999999999 799999988766655544322211100
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+ ........+.++.++..+...+...+.+.++.++.. .+++..++......++
T Consensus 100 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~ 152 (420)
T PRK09528 100 P-----------------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGRARMWGSL 152 (420)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchhhHHhhhH
Confidence 0 000011112222233333333333333333332111 1267788888888999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
|.+++|.+++++.+ .+|++.|++.++..++..+..+..+++.+++ ++.++ + ++.
T Consensus 153 g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~----~~~------ 206 (420)
T PRK09528 153 GWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVAN--------------A----LGA------ 206 (420)
T ss_pred HHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhcc--------------c----hhc------
Confidence 99999999999876 5899999988776665555444333221110 00000 0 000
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHH-HHHHHHHHHhhcc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPII-VSTLFMNTCLAQL 322 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 322 (558)
+ .+..+..+..... ++ +..+...... .....+.....+.
T Consensus 207 -----------~---~~~~~~~~~~~~l-------------------------~~-~~~~~l~l~~~~~~~~~~~~~~~~ 246 (420)
T PRK09528 207 -----------N---ASAVSLKDALALL-------------------------KL-PKFWFLVLYVIGVACFYDVFDQQF 246 (420)
T ss_pred -----------c---cccccHHHHHHHc-------------------------cC-CCeEeehHHHHHHHHHHHHHHHHH
Confidence 0 0000000000000 00 1111111111 1111111111122
Q ss_pred cceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008651 323 QTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAV 402 (558)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~ 402 (558)
+.+...... +.... ....+.+..+..+...++.++.+++.||+++| +.+..+.++.+++.+...+
T Consensus 247 ~~~~~~~~~--~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 247 PNFFASFFA--TPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHh--ccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHh
Confidence 222211110 00000 00012233334455567788889999999887 4467777777777666654
Q ss_pred HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHH-HHHHHHHHHHHHHH
Q 008651 403 VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAI-SWCSIAFGYFLSSL 481 (558)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~ 481 (558)
.+ +.++++...++.+++.....+....++.+..|++.+++..++ +++...+|..+++.
T Consensus 312 ~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 312 AT---------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred cc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 32 445566667788888888777788899999999999988765 67778899999999
Q ss_pred HHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 482 VVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 482 l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
+.|.+.+ .. ++...|...+++.++..++.++..
T Consensus 371 ~~G~l~~---------~~---G~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 371 LAGNLYD---------SI---GFQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred HHHHHHH---------hh---CchHHHHHHHHHHHHHHHHHHHHh
Confidence 9998863 22 134456667777666665555444
No 66
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.89 E-value=9.5e-21 Score=199.14 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=128.7
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
+++.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||.++.+.++..++.+++.++.
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~---------------- 94 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAH---------------- 94 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 45668999999999999999999999999999999999 7999999999999999888887753
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST 177 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 177 (558)
+.+.+++.|++.|++.+...+....+..|.+++++ |+++.+++..+..+|..+||.+++++.+
T Consensus 95 -----------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 95 -----------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred -----------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999888888888999888765 8999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 008651 178 NQGWDWSFGVCTIAVLFAT 196 (558)
Q Consensus 178 ~~gw~~~f~i~~~~~~~~~ 196 (558)
..|||+.|++.++..++..
T Consensus 158 ~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 158 LFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred ccChHHHHHHHHHHHHHHH
Confidence 8999999998776544433
No 67
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.9e-21 Score=206.04 Aligned_cols=378 Identities=17% Similarity=0.172 Sum_probs=252.3
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcC
Q 008651 21 HGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVN 100 (558)
Q Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (558)
+.++++|.+|-+++.+++..++.++++++|+++|| +|-|+++..+.++.+++.++...+..
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~------------------ 125 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS------------------ 125 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34689999999999999999999999999999999 79999999999999999999999874
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc-c
Q 008651 101 QCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN-Q 179 (558)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~-~ 179 (558)
.+.+.+++.|+++|++.|...|+...+.+.+.|+.| |++..++.+.+..+|.+++..++|++.+. .
T Consensus 126 -------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~ 192 (466)
T KOG2532|consen 126 -------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSL 192 (466)
T ss_pred -------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCC
Confidence 244578999999999999999999999999999998 99999999999999999999999999998 9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccccc
Q 008651 180 GWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRT 259 (558)
Q Consensus 180 gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 259 (558)
||+++|++.++..++..++++......+.++|.-++ +|+..+.
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----------------------~El~~I~-------------- 235 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-----------------------KELKYIE-------------- 235 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----------------------HHHHHHH--------------
Confidence 999999999988777777665543322222221111 0111100
Q ss_pred cchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHH-HHHHHHHHHHhhcccceeeeeccccccccc
Q 008651 260 DQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPI-IVSTLFMNTCLAQLQTFCIQQSTTMDRNLF 338 (558)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
..+.. .+.. .....||+... ....++..+.. +.-...++....+.++ |..+..+++..
T Consensus 236 -------~~k~~-~~~~-----~~~~vP~~~i~-----ts~~vwai~~~~f~~~~~~~~l~~y~Pt-Y~~~VL~f~v~-- 294 (466)
T KOG2532|consen 236 -------KGKSE-AHVK-----KKPPVPYKAIL-----TSPPVWAIWISAFGGNWGFYLLLTYLPT-YLKEVLGFDVR-- 294 (466)
T ss_pred -------hcccc-cccC-----CCCCCCHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhCCChh--
Confidence 00000 0000 00124554221 11222222222 2223333333333333 33433444433
Q ss_pred ccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 008651 339 GFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRI--GVGLVLSAVSMAVAAVVETKRKSVAVEHNM 416 (558)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~--~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~ 416 (558)
..+++..++.+..++...+.+.+.|++.+| . . +....+++ .++....+++++.+++..
T Consensus 295 ----~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~-l--s~t~~rkifn~i~~~~~ai~l~~l~~~~------------ 354 (466)
T KOG2532|consen 295 ----ETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I-L--SETTVRKIFNTIAFGGPAVFLLVLAFTS------------ 354 (466)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-C--chHhHHHHHHhHHHHHHHHHHHeeeecC------------
Confidence 356677788888999999999999999886 2 1 11222333 456666666666665542
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 008651 417 VDSIEPLPMSVFWLGFQYAIFGAADMFTL-VGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLA 495 (558)
Q Consensus 417 ~~~~~~~~~~~~~~i~~~~l~g~g~~~~~-~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 495 (558)
..+. +..+..+..+++..... +..+.-..+. -++.-+..+|+.++...+++.++|.+++.+.+
T Consensus 355 -------~~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~------- 418 (466)
T KOG2532|consen 355 -------DEHR-LLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT------- 418 (466)
T ss_pred -------CCcc-hHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-------
Confidence 0111 11212222222222222 2222222222 45678999999999999999999999998763
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 496 SNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 496 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
++ ....|...|++.+++.+++.+++.++.
T Consensus 419 -~~-t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 419 -DN-TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred -CC-CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 22 345677889999999999988777664
No 68
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.89 E-value=2.9e-21 Score=210.15 Aligned_cols=406 Identities=16% Similarity=0.136 Sum_probs=245.0
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchh
Q 008651 30 KSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQ 109 (558)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (558)
+.+|+.+++.++..+++++.|+++|+ +|||+.++++.+++.+|.++++++. +
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~---------------------------~ 141 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP---------------------------S 141 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh---------------------------h
Confidence 45899999999999999999999999 7999999999999999999999985 7
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc-cchhhHHHHH
Q 008651 110 VAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN-QGWDWSFGVC 188 (558)
Q Consensus 110 ~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~-~gw~~~f~i~ 188 (558)
...++++|++.|+|.|+.....+.+++|..|++. |+...+..+...++|..++..++....+. ++||..+.+.
T Consensus 142 ~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~ 215 (513)
T KOG0254|consen 142 WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLA 215 (513)
T ss_pred HHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHH
Confidence 8899999999999999999999999999999987 99999999999999999995555555443 5899888877
Q ss_pred HHHHHHHHHHHHHhc--ccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccccccchhhhh
Q 008651 189 TIAVLFATVFVIMGK--SLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLD 266 (558)
Q Consensus 189 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (558)
.+..++..+.+++.. |++..+ .+ +..+..+.+.... ... +++.....+ .+. .+
T Consensus 216 ~i~~~~~~~~~~~~pesp~~L~~--~g-~~~~a~~~l~~l~---g~~-~~~~~~~~~-----------~~~-------~~ 270 (513)
T KOG0254|consen 216 LIPAVILALGMLFLPESPRWLIE--KG-RLEEAKRSLKRLR---GLS-PEDVEVELE-----------LLK-------IK 270 (513)
T ss_pred HHHHHHHHHHHHhCCCChHHHHH--cC-ChHHHHHHHHHHh---CCC-CcchHHHHH-----------HHH-------HH
Confidence 666444444433211 111111 00 1111111111111 100 000000000 000 00
Q ss_pred HhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccc--eeeeecccccccccccccCC
Q 008651 267 RAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQT--FCIQQSTTMDRNLFGFKVPG 344 (558)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 344 (558)
..... .... ....|+.+..+ ..+++......+. .++|... ....+....-.. .+...+.
T Consensus 271 ~~~~~-~~~~-------~~~~~~~l~~~--~~~~~~~i~~~l~--------~fqq~tG~~~~~~Y~~~if~~-~g~~~~~ 331 (513)
T KOG0254|consen 271 LLVEA-EVAE-------GKASWGELFSP--KVRKRLIIGLLLQ--------LFQQLTGINYVFYYSTTIFKS-AGLKSDT 331 (513)
T ss_pred HHHhh-hccc-------ccccHHHhcCc--chHHHHHHHHHHH--------HHHHHhCCceEEeehHHHHHh-cCCCCch
Confidence 00000 0000 00011111110 1122221111111 1122211 111221111111 1122211
Q ss_pred CCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCcc
Q 008651 345 PSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLP 424 (558)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (558)
.....+..+..++++.+...+.||++|| ..+..|...+.+++++++.......+.... ...
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~--------~~~ 392 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYPNS--------SKG 392 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCCCc--------ccc
Confidence 2333444555566666678999999998 668899999999999888664222110000 011
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchh
Q 008651 425 MSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKL 504 (558)
Q Consensus 425 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~ 504 (558)
..+..+....++.......+.|..+.+..|..|.+.|+++.++....+.+.+.+-....+...... + .
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~---------~---~ 460 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL---------G---I 460 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---------c---c
Confidence 233333334444445555566777788999999999999999999988888777766666554211 1 1
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhcccchhhhhhhccccccc
Q 008651 505 NYFYWLLAGISVLNFG-FYLACASWYRYKEVEIKQVEDCSD 544 (558)
Q Consensus 505 ~~~f~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 544 (558)
...|..+++++.+... +++++.+++|+++.|+.+......
T Consensus 461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred cchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 2345566666666666 788889999999998877655443
No 69
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.88 E-value=5.2e-23 Score=208.83 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=143.9
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
+++.=|.+-.++ .-+++.+|+++++.|++.+.|.+.+.++.|+.|+++|| +.||+++.+|..++.++.+.++++.
T Consensus 45 ny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs~--- 119 (493)
T KOG1330|consen 45 NYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFSN--- 119 (493)
T ss_pred HHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHHH---
Confidence 334444444433 34567899999999999999999999999999999999 6999999999999999999999985
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
.+|++.+.|.+.|+|.+.+.|.++++++|.||+++ |++.++++|+..++|
T Consensus 120 ------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvG 169 (493)
T KOG1330|consen 120 ------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVG 169 (493)
T ss_pred ------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccc
Confidence 78999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHHhc
Q 008651 165 SIIGVTFIVWISTNQG-WDWSFGVCTIAVLFATVFVIMGK 203 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~ 203 (558)
+.+|..+++.+....+ |||.|++.+++.++..++.++..
T Consensus 170 sglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 170 SGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred cceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999988777 99999998888666555555443
No 70
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.88 E-value=9.1e-21 Score=202.30 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=127.9
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
...+++++ +|+|+++.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++.++++.....
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~----------- 114 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA----------- 114 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc-----------
Confidence 34456665 59999999999999999999999999999999 799999999998888888877654210
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
..+...+.+.|++.|++.|...+.....+.|++|+++ |++++++++...++|..+++.+.+.
T Consensus 115 ------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 115 ------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred ------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence 0146677889999999999999999999999999887 9999999999999999999887765
Q ss_pred -hccccchhhHHHHHHHHHHHHHHHH
Q 008651 175 -ISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 175 -l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
+....+||+.|++.++..++..+..
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~ 202 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFA 202 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445799999999887755544333
No 71
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.88 E-value=2.2e-20 Score=195.76 Aligned_cols=349 Identities=11% Similarity=0.034 Sum_probs=216.0
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHH-HHHH-HHHHHhhhccccCCCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIE-LLGL-AILAIQAHAHQLRPKP 90 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 90 (558)
.+++|.|+ +++|+|.++.|++.+.+.+...+++++.|.++|| +||++.......+. .+.. +.+..++
T Consensus 24 ~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--------- 92 (382)
T TIGR00902 24 LPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAAAFSAGAH--------- 92 (382)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 35566777 5789999999999999999999999999999999 79854432222111 1111 1222221
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
+++.+++.|++++.+.+...|...++..+. + + +|++.++......++|.++||.
T Consensus 93 ------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~~~~slG~~~g~~ 146 (382)
T TIGR00902 93 ------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVRLIGSAAFIIGSA 146 (382)
T ss_pred ------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHHHHHHHHHHHHHH
Confidence 678888999999999988888888887553 2 3 2899999999999999999999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccc
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAG 250 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (558)
+++++.+.+|||..|++......+..+ .+..+++. +|++++ +++
T Consensus 147 l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~-------------------~~~------------- 190 (382)
T TIGR00902 147 LFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAI-------------------PED------------- 190 (382)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccc-------------------ccc-------------
Confidence 999999999999999886554332222 22222111 111000 000
Q ss_pred ccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeec
Q 008651 251 LDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQS 330 (558)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
+. .... +.... .++++.....+..++....+...+... +.+..+
T Consensus 191 ---~~---~~~~---~~~~~-------------------------l~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~l~~- 234 (382)
T TIGR00902 191 ---ES---QGDS---AFIAL-------------------------LKNPMNLRFLAAVCLIQGAHAAYYGFS-AIYWQA- 234 (382)
T ss_pred ---cc---ccch---hHHHH-------------------------HcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-
Confidence 00 0000 00000 011111111111111122222222111 112211
Q ss_pred ccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 331 TTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSV 410 (558)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~ 410 (558)
.+.+.. ..+.+.....+..++...+.+++.||++.| +.+.++.++.++..+.+...+
T Consensus 235 ~g~s~~------~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----------~~l~~~~~~~~~~~~~~~~~~------ 291 (382)
T TIGR00902 235 AGISAS------ATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----------DLLLISAIACVGRWAIIGAIE------ 291 (382)
T ss_pred CCCCHh------HHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----------HHHHHHHHHHHHHHHHHHhHh------
Confidence 111111 112222233344444455555555555544 667889999998888776543
Q ss_pred hhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 008651 411 AVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISW-CSIAFGYFLSSLVVEIVNKV 489 (558)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~l~~~i~~~ 489 (558)
+.+.++...++.++..+...+....++.+. |++.+++++++++ +...+|..+++.+.|.+.+
T Consensus 292 ---------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~- 354 (382)
T TIGR00902 292 ---------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP- 354 (382)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 566677788999999999999999999988 9999999999986 4677899999999998862
Q ss_pred cCCcccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 008651 490 SGGWLASNNLNRDKLNYFYWLLAGISVLNFGFY 522 (558)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~ 522 (558)
..+ . ..|+..+++++++.++.
T Consensus 355 --------~~g---~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 355 --------TLG---A-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred --------hcc---H-HHHHHHHHHHHHHHHHH
Confidence 221 2 34567777777665443
No 72
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.88 E-value=5.3e-20 Score=196.00 Aligned_cols=353 Identities=12% Similarity=0.083 Sum_probs=223.1
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc---cCchH-HHHHHHHHHHHHHHHHHHh
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY---LSRFK-TCVLFGCIELLGLAILAIQ 80 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~l~~~~~~~~~~~~~~~~~ 80 (558)
..+.+..+..+++.|+++++|+++.++|++.+...+...+..|+.|+++||. +|||| .++.+..+..++.+++...
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~ 90 (437)
T TIGR00792 11 NNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT 90 (437)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC
Confidence 3455556667889999999999999999999999999999999999999983 57755 4667777777777777654
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
+..+ .......+.+.+++.+++.+.......++..|..++++ +|++..++....
T Consensus 91 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~ 144 (437)
T TIGR00792 91 PDFS---------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFG 144 (437)
T ss_pred CCCC---------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHH
Confidence 2110 01235567777888899888888888899999886543 389999998888
Q ss_pred HHHHHHHHHHHHHHhc-------cccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCC
Q 008651 161 LTVGSIIGVTFIVWIS-------TNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLP 233 (558)
Q Consensus 161 ~~ig~~~g~~~~~~l~-------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (558)
.++|..+++.+.+.+. +..+|++.+.+.++..++..++.....++.++++++++
T Consensus 145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------------------- 205 (437)
T TIGR00792 145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI------------------- 205 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-------------------
Confidence 8898887766655443 34689999888777655554443332221110000000
Q ss_pred CCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHH
Q 008651 234 KPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTL 313 (558)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (558)
++ +.+..+..+.. .+++ .....+...+...
T Consensus 206 -~~------------------------~~~~~~~~~~l------------------------~~~~-~~~~~~~~~~~~~ 235 (437)
T TIGR00792 206 -EK------------------------KLSLKQIFKAL------------------------FKND-QLLILCLAYLFYN 235 (437)
T ss_pred -cc------------------------CCCHHHHHHHH------------------------hCCH-HHHHHHHHHHHHH
Confidence 00 00000000000 0111 1111111111111
Q ss_pred HHHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHH
Q 008651 314 FMNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~ 393 (558)
...........++..+..+ + ....+.+..+..+..+++.++.+++.||+++| +.+..+.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~ 297 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-D------PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLM 297 (437)
T ss_pred HHHHHHcchhheeEeeecC-C------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHH
Confidence 1111111122233322111 0 00112233344566778888889999988877 4567777777
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-------hhhHHHHHH
Q 008651 394 AVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-------AGMKSLSTA 466 (558)
Q Consensus 394 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g 466 (558)
.++++...+.. .+.+..++..++.+++.+...+..+++..+..| ++.+|.+.|
T Consensus 298 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 298 VLGYLIFFFAG--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHHHHcc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 77766654421 133444556677888888888888888887765 567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 467 ISWCSIAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 467 i~~~~~~lg~~lg~~l~~~i~~~~ 490 (558)
+.++...+|..+++.+.+.+.+..
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987543
No 73
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.87 E-value=7.8e-20 Score=193.77 Aligned_cols=377 Identities=11% Similarity=0.061 Sum_probs=217.9
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCc-hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSR-FKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
++++.|+++++|+|..+.|++.+.+.++..++++++|+++|| +|| |+++.++.++..++..+..+..
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~----------- 90 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVT----------- 90 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 678899999999999999999999999999999999999999 665 7788888877777776666543
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCC--ChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDER--DPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~--~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
+++.+++.|++.+++.+...+...++..+...+. +....-.|.+.++ .+|.++||.
T Consensus 91 ----------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~ 148 (418)
T TIGR00889 91 ----------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMW 148 (418)
T ss_pred ----------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHH
Confidence 5667788889999987777776666543332111 0000002555544 478889999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccc
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAG 250 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (558)
+++.+.....|. +|++.++..++..+..+ ..++.+++ ++++. . + ..
T Consensus 149 l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~-~~~~~-~-------------------~---~~-------- 194 (418)
T TIGR00889 149 AVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVA-KSTAK-M-------------------S---IK-------- 194 (418)
T ss_pred HHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCC-ccccc-c-------------------C---HH--------
Confidence 998885433454 45555554444333322 22211100 00000 0 0 00
Q ss_pred ccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeec
Q 008651 251 LDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQS 330 (558)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
+....+ ..... ++++.....+..++......... ...+.+..+.
T Consensus 195 -------~~~~~~---~~~~~-------------------------k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (418)
T TIGR00889 195 -------VMLGLD---AFILF-------------------------KNKRMAIFFFFSMLLGAPLQITN-IFGNGFLHEF 238 (418)
T ss_pred -------HHhhhh---HHHHh-------------------------cCCCeeeHHHHHHHHHhHHHHHH-HhHHHHHHHh
Confidence 000000 00000 00110101111111111111111 1101111110
Q ss_pred cccccccc-ccc-cCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008651 331 TTMDRNLF-GFK-VPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRK 408 (558)
Q Consensus 331 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~ 408 (558)
+.+.... ++. ...+....+..+..+++....+++.||+++| +.+..+.++.++++.++....
T Consensus 239 -g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l~~~~~---- 302 (418)
T TIGR00889 239 -GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGFFAYGD---- 302 (418)
T ss_pred -cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcC----
Confidence 0000000 000 0012223333445556667788888888887 557788888877765555421
Q ss_pred hhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 008651 409 SVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISW-CSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~l~~~i~ 487 (558)
......+.+++..++.+++++...+....++.+.+|++.||+++|+.+ ....+|..+|+.+.|.+.
T Consensus 303 -------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 303 -------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred -------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 001123345556788999998888888899999999999999999997 567899999999999887
Q ss_pred hccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 488 KVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWY 529 (558)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 529 (558)
+.. . ..+..++...|.+.+++++++.++++++.++.
T Consensus 370 ~~~----g--~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 370 EKM----F--AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHh----c--cccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 422 0 01112355667778888777777777766543
No 74
>PRK10133 L-fucose transporter; Provisional
Probab=99.87 E-value=7e-20 Score=195.21 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=111.4
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
+.+.+++++|.|+.+.+++.+.+.+++.+++++.|++.|| +||||++..+..+++++.+++......
T Consensus 48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~a------------ 114 (438)
T PRK10133 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEI------------ 114 (438)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 3445689999999999999999999999999999999999 799999999999999999886432211
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
.++..++++|+++|+|.|...+..++++.|..|+++ |...+++......+|..+|+.+++.+
T Consensus 115 ------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 115 ------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 167899999999999999999999999999765553 66678888889999999999887754
Q ss_pred c
Q 008651 176 S 176 (558)
Q Consensus 176 ~ 176 (558)
.
T Consensus 177 ~ 177 (438)
T PRK10133 177 I 177 (438)
T ss_pred H
Confidence 3
No 75
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.87 E-value=2.2e-20 Score=193.50 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=213.6
Q ss_pred hhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 9 FVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 9 ~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
+|.....+.+.+.+++|+|.++.+++.+.+.++..++.++.|+++|| +||||++.++.++..++.+.+ .+.
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~------- 85 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAP------- 85 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hhc-------
Confidence 34444445557788999999999999999999999999999999999 799999999998888777766 332
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG 168 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 168 (558)
+.+.+++.|++.|+|.+...+..+..+.|.+|+ + |++++++++...++|..++
T Consensus 86 --------------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~ 138 (355)
T TIGR00896 86 --------------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALA 138 (355)
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHH
Confidence 566888999999999999888888999998864 4 8999999999999999999
Q ss_pred HHHHHHhcccc--chhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcc
Q 008651 169 VTFIVWISTNQ--GWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHD 246 (558)
Q Consensus 169 ~~~~~~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (558)
+.+++.+.+.. +||+.|.+.+...++....+. ++.++++++++ +..
T Consensus 139 ~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------------~~~--------- 186 (355)
T TIGR00896 139 AAATVPLAQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQ--------------------TTT--------- 186 (355)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCC--------------------CCC---------
Confidence 99998887664 399888776554333322211 11111100000 000
Q ss_pred ccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccccee
Q 008651 247 REAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFC 326 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 326 (558)
+ ...++ . .++++.....+...+....++....+.+.+.
T Consensus 187 --------~-----------------------------~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 224 (355)
T TIGR00896 187 --------R-----------------------------LTPVR-I----WRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL 224 (355)
T ss_pred --------C-----------------------------CCCch-h----hcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0 0111111111111111122222222222221
Q ss_pred eeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 327 IQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETK 406 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~ 406 (558)
.. .+.+. ...+.......+..+++.++.+++.||+++|. +.+..+..+++++.+......
T Consensus 225 -~~-~g~~~------~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----------~~~~~~~~~~~~~~~~~~~~~-- 284 (355)
T TIGR00896 225 -IS-HGASA------ATAGSLLALMQLAQAASALLIPALARRVKDQR----------GIVAVLAVLQLVGLCGLLFAP-- 284 (355)
T ss_pred -HH-cCCCH------HHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----------HHHHHHHHHHHHHHHHHHHhh--
Confidence 11 11111 11223444456677788888898888884431 335566667776666555432
Q ss_pred HhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 407 RKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAES-SAGMKSLSTAISWCSIAFGYFLSSLVVEI 485 (558)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~lg~~l~~~ 485 (558)
....+ ...++.|++.+...|.....+.+.. +++.++..+++.+....++..+++.+.|.
T Consensus 285 ------------------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 285 ------------------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred ------------------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1346778899888888777666555 46778999999888888999999999998
Q ss_pred hhhcc
Q 008651 486 VNKVS 490 (558)
Q Consensus 486 i~~~~ 490 (558)
+.+..
T Consensus 345 l~~~~ 349 (355)
T TIGR00896 345 LHDIS 349 (355)
T ss_pred HHHHh
Confidence 87543
No 76
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.87 E-value=5.3e-20 Score=192.04 Aligned_cols=157 Identities=16% Similarity=0.105 Sum_probs=118.1
Q ss_pred HHHHHhhhhcC--CCchhhhHHHHH--HH---HHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 15 SLVTYFHGYMN--FSLTKSATTLTN--FT---GTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 15 ~l~~yl~~~~~--~s~~~~~~~~~~--~~---~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
....++.++.. .++++.+.+.+. +. +...+++++.|+++|| +||||+++.+.++..++.++++++...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 91 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATI- 91 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence 34455555543 456666655543 22 3334688999999999 799999999999999999998886421100
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
.......+++.|+++|++.+...+...+++.|.+|+++ |++..++.+.+..+|.++
T Consensus 92 ------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i 147 (394)
T TIGR00883 92 ------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLL 147 (394)
T ss_pred ------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHH
Confidence 00113468899999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHhc--------cccchhhHHHHHHHHHHHHHH
Q 008651 168 GVTFIVWIS--------TNQGWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 168 g~~~~~~l~--------~~~gw~~~f~i~~~~~~~~~~ 197 (558)
++.++..+. +.++||+.|++.++..+++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 148 AALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 988876653 357999999887766554443
No 77
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.87 E-value=1.3e-19 Score=190.97 Aligned_cols=160 Identities=12% Similarity=-0.025 Sum_probs=124.6
Q ss_pred hHHHHHHHhhh-hcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 12 NMVSLVTYFHG-YMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 12 ~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
+.+.+...+.+ ++|+|.+|.+++.+.+.+++.++.++.|++.|| +|.|+++.++.++..+..+.++++.+.
T Consensus 52 ~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~~------- 123 (462)
T PRK15034 52 LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQN------- 123 (462)
T ss_pred HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 33444556554 799999999999999999999999999999999 799999999999999999988875210
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
...+++.+++.|++.|++ |...+.....+++++|+++ |++++++.....|+|..+++.
T Consensus 124 ---------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 124 ---------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred ---------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHH
Confidence 012688999999999998 7788999999999999987 999999997777777776655
Q ss_pred HHHHhc-----c-------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008651 171 FIVWIS-----T-------------NQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 171 ~~~~l~-----~-------------~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
+...+. . ..+|+.++++-.+..++..++.++
T Consensus 182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554322 2 334777766666655555444443
No 78
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.87 E-value=6.1e-20 Score=193.22 Aligned_cols=374 Identities=11% Similarity=0.051 Sum_probs=220.5
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
.++....++++.|+++++|.+..+.+++.+.+.++..+++++.|+++|| +||||.++.+....+++..........+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (396)
T TIGR00882 16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLL 94 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3455566788899999999999999999999999999999999999999 799999998776665544332211000000
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
. ......+.+.+++.|++.+...+....+..|..+ + ++..++......++|.+
T Consensus 95 ~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-------~~~~~g~~~~~~~~g~~ 147 (396)
T TIGR00882 95 Q-------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-N-------SNFEYGKARMFGCVGWA 147 (396)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-h-------cccccchhhhhcccHHH
Confidence 0 0023345667888899888888888777766422 1 44567777788899999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcc
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHD 246 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (558)
+||.+++.+.+ .+|+..|++.+...++..++.+..+++. |+++...+ +. .++.
T Consensus 148 ~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~---~~~~--------- 200 (396)
T TIGR00882 148 LCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN----------AL---GANA--------- 200 (396)
T ss_pred HHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc----------cc---cccc---------
Confidence 99999998865 5999999998776555544433322211 11000000 00 0000
Q ss_pred ccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHH-HHHHHHHhhcccce
Q 008651 247 REAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVS-TLFMNTCLAQLQTF 325 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 325 (558)
++.+..+..... ++++ .+..+..... ...+.....+.+.+
T Consensus 201 -------------~~~~~~~~~~~l-------------------------~~~~-~~~~~l~~~~~~~~~~~~~~~~~~y 241 (396)
T TIGR00882 201 -------------SAFSLKLALELF-------------------------RQRK-FWMFVLYVVGVACVYDVFDQQFANF 241 (396)
T ss_pred -------------CCCCHHHHHHHH-------------------------cCCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 1111 1111111111 11111111111121
Q ss_pred eeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 326 CIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVET 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~ 405 (558)
......+.... ....+....+..+...++....+++.||+++| +.+.++..+.++........
T Consensus 242 ~~~~~~~~~~~----~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~-- 304 (396)
T TIGR00882 242 FTSFFATPQQG----TRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFA-- 304 (396)
T ss_pred HHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhc--
Confidence 11110000000 00011222333444555667778888888877 44677777777766554432
Q ss_pred HHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008651 406 KRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAI-SWCSIAFGYFLSSLVVE 484 (558)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~l~~ 484 (558)
.+.+++.+..++.+++..........+..+..|++.+++..+. .+....+|+.+++.+.|
T Consensus 305 -------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 305 -------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred -------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 2455556677788888777666666778888888888887766 56788899999999999
Q ss_pred HhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 008651 485 IVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFY 522 (558)
Q Consensus 485 ~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~ 522 (558)
.+.+ .. ++...|.+.+++.++..+..
T Consensus 366 ~l~~---------~~---G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 366 NMYD---------SI---GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHH---------hc---ccHHHHHHHHHHHHHHHHHH
Confidence 8863 11 23455666666666555543
No 79
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.86 E-value=9.7e-20 Score=216.92 Aligned_cols=344 Identities=11% Similarity=0.057 Sum_probs=209.7
Q ss_pred hhhHHHHHHHhhhhcCCCc--hhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 10 VANMVSLVTYFHGYMNFSL--TKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
.+....+..++...++.+. ...+++.+++.+++.++++++|+++|| +|||++++++.++.+++.++..++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~---- 100 (1146)
T PRK08633 26 LGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYL---- 100 (1146)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3344455566666666654 447899999999999999999999999 799999999987777666665554211
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
.+++.+++.|+++|++.+...++..+++.|++|+++ |++++++...+.++|.++
T Consensus 101 --------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~l 154 (1146)
T PRK08633 101 --------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILA 154 (1146)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHH
Confidence 157889999999999999999999999999999987 999999999999999999
Q ss_pred HHHHHHHhccc--------c-chhhHHHHHHHHH-HHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCc
Q 008651 168 GVTFIVWISTN--------Q-GWDWSFGVCTIAV-LFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEM 237 (558)
Q Consensus 168 g~~~~~~l~~~--------~-gw~~~f~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (558)
|+.+++++.+. + +|.+.+.+..+.. ++++++.+ ..++.+...+... +.
T Consensus 155 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------------~~ 212 (1146)
T PRK08633 155 GTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAY-RLPKVPAAAPEVF---------------------DK 212 (1146)
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHh-cCcCCCCCCcccc---------------------cc
Confidence 99999998765 2 3444443333222 22222222 1221111000000 00
Q ss_pred cchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhh-HHHHHHHHHHH
Q 008651 238 ADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRM-LPIIVSTLFMN 316 (558)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 316 (558)
. . ........+..... ...+.++.. +...+......
T Consensus 213 ~----------------~--~~~~~~~~~~~~~l-------------------------~~~~~~~~~~~~~~~~~~~~~ 249 (1146)
T PRK08633 213 K----------------K--YLFPKLLWRNLKLL-------------------------RSDRVLWLAIIGLSYFWFISQ 249 (1146)
T ss_pred c----------------c--cccHHHHHHHHHHH-------------------------hcCcHHHHHHHHHHHHHHHHH
Confidence 0 0 00000000000000 000111111 11111111111
Q ss_pred HHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 008651 317 TCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVS 396 (558)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~ 396 (558)
.....++.+ .....+.+.. ...+.+.....++.+++..+.+++.||++++ +.+.++.++++++
T Consensus 250 ~~~~~~~~~-~~~~~g~s~~-----~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~ 312 (1146)
T PRK08633 250 LAQANFPAY-AKEVLGLDNT-----FQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------GLVPLGALGLALS 312 (1146)
T ss_pred HHHHhhHHH-HHHHhCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------cchhHHHHHHHHH
Confidence 111111111 1111111100 0112233344455566666667666665544 3455677777776
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 008651 397 MAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGY 476 (558)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~ 476 (558)
++++.... +.+++++..++.|++.+...+....++.+.+|++.||+++|+.++...+|.
T Consensus 313 ~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~ 371 (1146)
T PRK08633 313 LFLLPTAP---------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM 371 (1146)
T ss_pred HHHHHHhh---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence 66665431 455566677888999988888888999999999999999999999999998
Q ss_pred HHHHHHHHHhh
Q 008651 477 FLSSLVVEIVN 487 (558)
Q Consensus 477 ~lg~~l~~~i~ 487 (558)
.+++.+.+.+.
T Consensus 372 ~~~~~~~~~l~ 382 (1146)
T PRK08633 372 LLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHH
Confidence 88777766553
No 80
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.86 E-value=2.2e-19 Score=193.50 Aligned_cols=330 Identities=16% Similarity=0.109 Sum_probs=220.3
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcC
Q 008651 21 HGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVN 100 (558)
Q Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (558)
..++.-|+...+++..+..+-..+..+++|.++|| +.|||+++.+-++..+..+.+++....
T Consensus 37 v~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~----------------- 98 (524)
T PF05977_consen 37 VTQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFF----------------- 98 (524)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 34567789999999999999999999999999999 799999999999887776666654321
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008651 101 QCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQG 180 (558)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g 180 (558)
+..+.+.+++.-++.|++.+...|+.++++.|.+|+++ ..++.++.....|+.-++||.++|.+....|
T Consensus 99 -----~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G 167 (524)
T PF05977_consen 99 -----GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFG 167 (524)
T ss_pred -----CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 12367888999999999999999999999999999987 8999999999999999999999999998889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccccccccccccc
Q 008651 181 WDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTD 260 (558)
Q Consensus 181 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 260 (558)
-.+.|.++++..++.+..+...++..+ ++..+.+...+.+.
T Consensus 168 ~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~------------------------------------ 208 (524)
T PF05977_consen 168 AAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALR------------------------------------ 208 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHH------------------------------------
Confidence 999999999887766555444332211 11111000000000
Q ss_pred chhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHH-HHHHHHHHHHhhcccceeeeecccccccccc
Q 008651 261 QFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPI-IVSTLFMNTCLAQLQTFCIQQSTTMDRNLFG 339 (558)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (558)
+.... +...+.+...+.. .++....... ......+..+..+.+..
T Consensus 209 -----~G~ry-------------------------v~~~~~l~~~l~~~~~~~l~~~a~-~aLlPl~a~~~l~~~a~--- 254 (524)
T PF05977_consen 209 -----EGLRY-------------------------VRSSPPLRSVLLRSFLFNLFASAV-WALLPLFARDVLGGGAS--- 254 (524)
T ss_pred -----HHHHH-------------------------HhcchHHHHHHHHHHHHHHhhhHH-HHhhhHHHHHHhCCcHH---
Confidence 00000 0001111111111 1111111111 11112222211111100
Q ss_pred cccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Q 008651 340 FKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDS 419 (558)
Q Consensus 340 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~ 419 (558)
.-+.+....+++.++++.+..+ +.+|. +..+.+..+.++.+++++.+++..
T Consensus 255 ---~yGll~a~~gvGai~Gal~~~~----l~~~~-------~~~~lv~~~~~~~a~~~~~lal~~--------------- 305 (524)
T PF05977_consen 255 ---GYGLLLAAFGVGAILGALLLPR----LRRRL-------SSRRLVLLASLLFALALLLLALSP--------------- 305 (524)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH----hhccc-------CcchhhHHHHHHHHHHHHHHhcch---------------
Confidence 0112222333444444444443 33332 223556777888888777776642
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 420 IEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 420 ~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
+.+..++..++.|++.....+..++.+.+.+|++.||++++++.+....+..+|..+.|.+.
T Consensus 306 ------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 306 ------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778889999999999999999999999999999999999999889999999999886
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.86 E-value=2e-19 Score=188.36 Aligned_cols=326 Identities=10% Similarity=0.042 Sum_probs=199.2
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCch----HHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRF----KTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
...+.++.|+ +++|.|..++|++.+.+.+...++++++|.++|| +||| +.+.++..+. .. ......
T Consensus 22 ~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~-~~~~~~----- 91 (382)
T PRK11128 22 VFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AV-AFWFGA----- 91 (382)
T ss_pred HHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HH-HHHHhc-----
Confidence 3345677788 5689999999999999999999999999999999 7984 3332222111 11 111111
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
.+.+.+++.|++.|++.+...|...++..++ + ++ |+++++......++|.+
T Consensus 92 ---------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~-~~------~~~a~~~~~~~~~lg~~ 142 (382)
T PRK11128 92 ---------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q-KQ------IGLDYGKVRLWGSIAFV 142 (382)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-H-hh------ccCCcchHHHHHHHHHH
Confidence 2678888999999999999999888888776 2 22 78888888888999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcc
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHD 246 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (558)
+||.+++++.+++|||..|++.++..++..+..+ ..++ ++|++++.+ +.
T Consensus 143 igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-----------------~~---------- 191 (382)
T PRK11128 143 IGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGESRQ-----------------QE---------- 191 (382)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCcccccc-----------------cc----------
Confidence 9999999999999999999887765444433222 2211 111110000 00
Q ss_pred ccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHH-HHHHHHHHHHHhhcccce
Q 008651 247 REAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLP-IIVSTLFMNTCLAQLQTF 325 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 325 (558)
.+...++ .... ++ +..+.... .++....+....... ..
T Consensus 192 -----------~~~~~~~---~~i~-------------------------~~-~~~~~~~~~~~l~~~~~~~~~~~~-~~ 230 (382)
T PRK11128 192 -----------SAGWPAW---KALL-------------------------KE-PTVWRFLLCVSLLQGSHAAYYGFS-AI 230 (382)
T ss_pred -----------ccccchH---HHHH-------------------------cC-hhHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 0000000 0000 11 11111111 111111111111111 11
Q ss_pred eeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 326 CIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVET 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~ 405 (558)
+..+ .+.+.. ..+.+.....+..++...+.+++.||+++| +.+..+.++.+++++.....+
T Consensus 231 ~~~~-~g~s~~------~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~l~~~~~~~~~~~~~~~~~~- 291 (382)
T PRK11128 231 YWQA-AGYSAS------TIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----------DLLLLSAICGVVRWGLMGSTT- 291 (382)
T ss_pred HHHH-CCCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHHHHHHHhhh-
Confidence 1111 111111 012222233444455555666677666665 557777888777776665432
Q ss_pred HHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008651 406 KRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISW-CSIAFGYFLSSLVVE 484 (558)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~l~~ 484 (558)
+.+++++..++.|++++...+....+..+. |++.+++.+++.+ ....+|..+|+.+.|
T Consensus 292 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G 350 (382)
T PRK11128 292 --------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSG 350 (382)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667778889999999888888888876 5556788899876 456677789999999
Q ss_pred Hhh
Q 008651 485 IVN 487 (558)
Q Consensus 485 ~i~ 487 (558)
.+.
T Consensus 351 ~l~ 353 (382)
T PRK11128 351 FLY 353 (382)
T ss_pred HHH
Confidence 886
No 82
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.85 E-value=8.3e-19 Score=189.60 Aligned_cols=369 Identities=11% Similarity=0.110 Sum_probs=223.2
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc-----CchHH-HHHHHHHHHHHHHHHHHhh
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL-----SRFKT-CVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grr~~-l~~~~~~~~~~~~~~~~~~ 81 (558)
.++.....++.+++ +.|.|.++.+.. +..... +++.++.|.++|| + ||||. ++.+.++..++...+++..
T Consensus 27 ~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~ 102 (491)
T PRK11010 27 PLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLE 102 (491)
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 34444556677764 569999999986 333333 3689999999999 8 99986 6577766777777776653
Q ss_pred hccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 008651 82 HAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSL 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (558)
. ..+++.+.+.+++.+++.+...+...++..|++|+++ |+++.++...+.
T Consensus 103 ~------------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~ 152 (491)
T PRK11010 103 P------------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGY 152 (491)
T ss_pred C------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHH
Confidence 1 1267788889999999999999999999999999876 999999999999
Q ss_pred HHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccch
Q 008651 162 TVGSIIGVTFIVWIST-NQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQ 240 (558)
Q Consensus 162 ~ig~~~g~~~~~~l~~-~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (558)
++|.++++.+++++.+ ..|||..|++.++..++..+..+.. ++.++.++++++..
T Consensus 153 ~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~~----------------------- 208 (491)
T PRK11010 153 RLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTLE----------------------- 208 (491)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccchh-----------------------
Confidence 9999999999999988 5799999999877655554443332 21100000000000
Q ss_pred hhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhh
Q 008651 241 LHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLA 320 (558)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 320 (558)
. . ...+..... ++.+.....+..............
T Consensus 209 -----------------~--~-~~~~l~~~~-------------------------~~~~~~~~ll~~~l~~~~~~~~~~ 243 (491)
T PRK11010 209 -----------------Q--A-VVAPLRDFF-------------------------GRNNAWLILLLIVLYKLGDAFAMS 243 (491)
T ss_pred -----------------h--h-HHHHHHHHH-------------------------cCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000000000 000001111111111111111111
Q ss_pred cccceeeeecccccccccccccCCCCCC-CcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 008651 321 QLQTFCIQQSTTMDRNLFGFKVPGPSLP-VIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAV 399 (558)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~ 399 (558)
...+++. +..+.+.. ..+... ....+..+++..+.+++.||+++| +.+.++.++.+++.+.
T Consensus 244 ~~~~~l~-~~~G~s~~------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~l~~l~ 305 (491)
T PRK11010 244 LTTTFLI-RGVGFDAG------EVGLVNKTLGLLATIVGALYGGILMQRLSLF-----------RALMIFGILQGVSNAG 305 (491)
T ss_pred HHHHHHH-HhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHH
Confidence 2222211 11121211 111222 222345677888889999999877 3344444444444333
Q ss_pred HHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008651 400 AAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLS 479 (558)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg 479 (558)
+..... ...+.+.+....++..+..+...+....+..+..|++.+++..|+.+....+|..++
T Consensus 306 ~~~l~~-----------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~ 368 (491)
T PRK11010 306 YWLLSI-----------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYV 368 (491)
T ss_pred HHHHHh-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 221110 011333333344554555555556667888889999999999999999999999988
Q ss_pred HHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 480 SLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 480 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
+.+.|.+.+ .. ++...|.+.+++++.+.+..+.+.
T Consensus 369 ~~~~G~l~~---------~~---G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 369 GPVAGWFVE---------AH---GWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHH---------Hh---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888763 22 245567777777777766666553
No 83
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.85 E-value=1.5e-19 Score=215.02 Aligned_cols=340 Identities=12% Similarity=0.056 Sum_probs=198.7
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHH--HHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 29 TKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGC--IELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
...++..+++.+.+.++++++|+++|| +|||+++..... +...+..+.++..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~------------------------- 105 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL------------------------- 105 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 346778889999999999999999999 799998644222 2222222222221
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFG 186 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~ 186 (558)
.+++.++++|+++|++.++..|+..+++.|++|+++ |++++++..++.++|.++||.++|++....+|++.|+
T Consensus 106 -~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 106 -NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred -hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 168899999999999999999999999999999987 9999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccccccccccccchhhhh
Q 008651 187 VCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLD 266 (558)
Q Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (558)
+.++..++++++.+.. ++.+..++..+......+ +..+
T Consensus 179 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~ 216 (1140)
T PRK06814 179 LLMGIAVLGWLASLFI-PKTGNAAPDLKIDRNIIR-----------------------------------------STIT 216 (1140)
T ss_pred HHHHHHHHHHHHHhhC-CCCCCCCCCCeeccchHH-----------------------------------------HHHH
Confidence 5544444444333322 111110000000000000 0000
Q ss_pred HhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccccccccccCCCC
Q 008651 267 RAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPS 346 (558)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (558)
..... ..++......+...+....+.....+.+. +..+..+.+ ....+.
T Consensus 217 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g~~------~~~~g~ 265 (1140)
T PRK06814 217 LLKYA------------------------KADKRIWLAILGISWFWLVGAVVLSQLPL-LAKETLGGD------ENVATL 265 (1140)
T ss_pred HHHHH------------------------hcCchHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHcCCc------hHHHHH
Confidence 00000 00011111111111111222222222222 121111111 111233
Q ss_pred CCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhcccccCCCCCccc
Q 008651 347 LPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETK-RKSVAVEHNMVDSIEPLPM 425 (558)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 425 (558)
+.....++.+++..+.+++.++..++ +.+..+.++.+++.+.+.+.... ..........+. -....
T Consensus 266 ~~~~~~~g~~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 332 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKLSEGRITL-----------LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV--FLSKR 332 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceee-----------eeehHHHHHHHHHHHHHHhcccccccccccccchhh--hhccc
Confidence 34455566677777777776544333 22344444444443333321000 000000000000 00012
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
+.+.+.+..++.|++.+...+...+++.+.+|++.+|+++|+.++...++..+++.+.+.+.
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788899999999889999999999999999999999999999999999988875
No 84
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.85 E-value=4.6e-20 Score=191.45 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=125.3
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..++.....+|.++++++|+|..+.+++.+.+.++..++++++|+++|| +|||+.++++.++..++.++++++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~~---- 89 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAVQ---- 89 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHhh----
Confidence 3444555566667999999999999999999999999999999999999 79999999999999999988887631
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
+++.+++.|+++|++.+.. +...++++|++|+++ |+++.+++....++|..
T Consensus 90 ----------------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~ 140 (366)
T TIGR00886 90 ----------------------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGG 140 (366)
T ss_pred ----------------------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHH
Confidence 5678889999999996654 567889999999886 99999999988888888
Q ss_pred HHHHHHHHhcc----------ccchhhHHH-HHHHH
Q 008651 167 IGVTFIVWIST----------NQGWDWSFG-VCTIA 191 (558)
Q Consensus 167 ~g~~~~~~l~~----------~~gw~~~f~-i~~~~ 191 (558)
+++.+++.+.. ..+||+.|+ +.++.
T Consensus 141 ~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 141 VAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 88877766654 348999994 33433
No 85
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.85 E-value=8e-19 Score=185.45 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=132.2
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
++...+.+.+++++|+|+.+.|++.+.+.+++.++.++.|++.|| +||||+++.+.++++++.+++..+..
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 344556677899999999999999999999999999999999999 79999999999999999888765431
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
..+++.+++.|++.|+|.|...+..++++.+..|+++ |++..++.+...++|..+||.
T Consensus 91 ----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 91 ----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred ----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1267889999999999999999999999999988876 888999999999999999999
Q ss_pred HHHHhcc--------------------------ccchhhHHHHHHHHHHHHH
Q 008651 171 FIVWIST--------------------------NQGWDWSFGVCTIAVLFAT 196 (558)
Q Consensus 171 ~~~~l~~--------------------------~~gw~~~f~i~~~~~~~~~ 196 (558)
+++.+.. ..+||++|++.++..++..
T Consensus 149 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 149 VAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887742 2469999988776544443
No 86
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.85 E-value=5.7e-19 Score=182.97 Aligned_cols=335 Identities=12% Similarity=0.068 Sum_probs=202.5
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc----cCchHHH-HHHHHHHHHHHHHHHHhhhccc
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY----LSRFKTC-VLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
++.....+.+.+++|+|.++.++..+. .+...+ .++.|.++||+ +||||.+ +.+.++..+....+++...
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--- 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--- 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 344444555567899999999999655 333344 89999999993 2899975 5666666666666655421
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 1255667777778888888889999999999998876 9999999999999999
Q ss_pred HHHHHHHHHhccccc--------hhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCc
Q 008651 166 IIGVTFIVWISTNQG--------WDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEM 237 (558)
Q Consensus 166 ~~g~~~~~~l~~~~g--------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (558)
++++.+++.+....+ ||..|++.++..++..+..++..++..++++++++..
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~-------------------- 192 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLT-------------------- 192 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHH--------------------
Confidence 999999999988888 9999999888766655444432222111000000000
Q ss_pred cchhhhhccccccccccccccccchhhhh-HhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHH-HHHHHHHH
Q 008651 238 ADQLHEIHDREAGLDTEILKRTDQFRFLD-RAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLP-IIVSTLFM 315 (558)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 315 (558)
.+..+ ..... ++ +..++.+..+. .++....+
T Consensus 193 ------------------------~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~~~~~~~~ 225 (356)
T TIGR00901 193 ------------------------QAVLKPIREFF---------------------QR--KNMIQALLLLLLIVLYKLGD 225 (356)
T ss_pred ------------------------HHHHHHHHHHH---------------------Hh--cCchHHHHHHHHHHHHHHHH
Confidence 00000 00000 00 00001211111 11122222
Q ss_pred HHHhhcccceeeeecccccccccccccCCCCCCCcCh-hHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHH
Q 008651 316 NTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPL-VFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSA 394 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~ 394 (558)
.......+. +..+ .+.+.. ..+.+..... +..+++..+.+++.||+++| +.+..+.++.+
T Consensus 226 ~~~~~~~~~-~l~~-~g~~~~------~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----------~~l~~~~~~~~ 286 (356)
T TIGR00901 226 SAATVLTTL-FLLD-MGFSKE------EIALVAKINGLLGAILGGLIGGIIMQPLNIL-----------YALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHH-HHHH-cCCCHH------HHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHH
Confidence 222222222 2111 111110 0111222222 34456777888999999887 44666667666
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 008651 395 VSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIA 473 (558)
Q Consensus 395 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ 473 (558)
++...+.+......+ .+ ..+.+.+.++...++.+++.+...+....+..+.+|++.||+.+|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHH----DG------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcc----cc------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 665554433100000 00 0012345566677888999999999999999999999999999999877553
No 87
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.4e-19 Score=181.01 Aligned_cols=370 Identities=14% Similarity=0.047 Sum_probs=247.4
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
|+...+...+.+++.+++|+|..|.+++...-.+...+..++-|.+.|| +|.|+...++.++..+-.+..+++.+.|
T Consensus 27 F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~~-- 103 (417)
T COG2223 27 FMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYP-- 103 (417)
T ss_pred HHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccCC--
Confidence 3444555677789999999999999999999999999999999999999 8999999999999999999999986533
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
+.+.+++.+++.|++ |+..+...+.++.+||+++ +|.+++++. ..|+|..
T Consensus 104 ----------------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~a 153 (417)
T COG2223 104 ----------------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVA 153 (417)
T ss_pred ----------------------chHHHHHHHHHHhcc-cceehcccccccccCChhh------hhHHHHHhc-cccccHH
Confidence 557999999999998 4566788899999999997 899999999 9999999
Q ss_pred HHHHHHHHhccccc---hhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 167 IGVTFIVWISTNQG---WDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 167 ~g~~~~~~l~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
+...++.++....+ |+....+..+.+++..+..++..+..++.++..++.. + .
T Consensus 154 v~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-----------------~-~------ 209 (417)
T COG2223 154 VAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-----------------P-A------ 209 (417)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc-----------------h-h------
Confidence 99999999998888 9998888877777766655554433222111111000 0 0
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ 323 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 323 (558)
+...+. .+++..+..+..+.....|-..-.+.+
T Consensus 210 ----------------------~~~~v~-------------------------~~~~~W~lsllY~~tFG~Fvgfs~~l~ 242 (417)
T COG2223 210 ----------------------QLKAVF-------------------------SNKDTWLLSLLYFATFGGFVGFSAYLP 242 (417)
T ss_pred ----------------------HHHHHh-------------------------cCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 111111112211111111111111112
Q ss_pred ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVV 403 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~ 403 (558)
.++..++ ..+ ....+......+....+.-|..+++.||++.+ +........++++.......
T Consensus 243 ~~~~~~f-g~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 243 MYLVTQF-GLS------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred HHHHHhc-CCC------hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHHHHHHHHHHHHHHHHcc
Confidence 2222221 111 22233455566777788899999999999988 44667777777777666653
Q ss_pred HHHHhhhhhcccccCCCCCccchhHH----HHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008651 404 ETKRKSVAVEHNMVDSIEPLPMSVFW----LGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLS 479 (558)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg 479 (558)
... ...+.+... .+...++.|+|++..+-. +....|+ +-|.+.|+......+|++.-
T Consensus 305 ~~~--------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~----Ip~if~~-~~G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 305 LTG--------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKM----IPVIFPK-ETGAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred ccc--------------cccCcchHHHHHHHHHHHHHhccCcchheee----chHHHHh-hhhHHHHHHHHhccccccch
Confidence 200 000112222 233445556666554422 3333333 67889999999999999888
Q ss_pred HHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 480 SLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASW 528 (558)
Q Consensus 480 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 528 (558)
+...+...+.+ +.+...|+++....+++.+..+....+
T Consensus 366 p~~~g~~~~~t-----------g~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 366 PLAFGVSLDLT-----------GSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred hHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888877443 234556788888888888877776544
No 88
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.83 E-value=7.6e-18 Score=177.70 Aligned_cols=151 Identities=9% Similarity=0.089 Sum_probs=123.5
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc-----CchH-HHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL-----SRFK-TCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..-+|.|++ +.|+|.++.|++...... .+..+++|+++|| + |||| .++++.++..++...+++...
T Consensus 19 ~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~---- 90 (402)
T PRK11902 19 SGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP---- 90 (402)
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCc----
Confidence 456788886 459999999999776665 6999999999999 7 8876 688878888777777766521
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
..+.+.+++..++.++..+...+...+++.|++|+++ |+++.++...+.++|.+
T Consensus 91 --------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i 144 (402)
T PRK11902 91 --------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAML 144 (402)
T ss_pred --------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHH
Confidence 1256667777777888888899999999999999887 99999999999999999
Q ss_pred HHHHHHHHhccc-cchhhHHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTN-QGWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 167 ~g~~~~~~l~~~-~gw~~~f~i~~~~~~~~~~ 197 (558)
+++.+++++.+. .|||..|++.++..++..+
T Consensus 145 ~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 145 VSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 999999988875 5999999997776554444
No 89
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.81 E-value=9.5e-24 Score=225.90 Aligned_cols=395 Identities=16% Similarity=0.141 Sum_probs=234.0
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchh
Q 008651 30 KSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQ 109 (558)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (558)
+.++..+...++..++.+++|+++|| +|||+++.++.++..++.++.++++.. .+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~------------------------~~ 101 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY------------------------NN 101 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc------------------------cc
Confidence 46789999999999999999999999 799999999999999999999997521 25
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc---ccchhhHHH
Q 008651 110 VAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST---NQGWDWSFG 186 (558)
Q Consensus 110 ~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~---~~gw~~~f~ 186 (558)
.+.+.++|+++|+|.|+..+....++.|..|++. |++..++......+|..++..++-.+.. ..+||..++
T Consensus 102 ~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~ 175 (451)
T PF00083_consen 102 FWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLI 175 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 7789999999999999999999999999999987 9999999999999999988776654433 345999998
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccc-cccccccccccc--chh
Q 008651 187 VCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDRE-AGLDTEILKRTD--QFR 263 (558)
Q Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~--~~~ 263 (558)
++.+..++..+.... .||+|+++..++++| +.+..+++.+.+ +.+
T Consensus 176 ~~~~~~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~ 223 (451)
T PF00083_consen 176 FGAIPSLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE 223 (451)
T ss_pred ccccccccccccccc--------------------------------cccccceeccccccccccccccccccccccccc
Confidence 877665443332221 233344433333222 111111111000 000
Q ss_pred hhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHH-HHhhcccceeeeeccccccccccccc
Q 008651 264 FLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMN-TCLAQLQTFCIQQSTTMDRNLFGFKV 342 (558)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (558)
..+..... .+.. .....|+.+...+. .++++...+.+........ .....+.+....+. +.
T Consensus 224 ~~~~~~~~-~~~~------~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~----------~~ 285 (451)
T PF00083_consen 224 IEEIKAEK-KESQ------ESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA----------GI 285 (451)
T ss_pred cccccccc-cccc------ccceeeeecccccc-cccccccccccccccccccccccccccccccccc----------cc
Confidence 00000000 0000 00012332222211 1122222211111111111 01111111111110 11
Q ss_pred CCC-CCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcccccCCC
Q 008651 343 PGP-SLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAA-VVETKRKSVAVEHNMVDSI 420 (558)
Q Consensus 343 ~~~-~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~-~~~~~~~~~~~~~~~~~~~ 420 (558)
+.. .......+..+++..+...+.||++|| +.+..+..+++++++.++ ..... .+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr-----------~~~i~~~~~~~~~~~~~~~~~~~~------~~------ 342 (451)
T PF00083_consen 286 SNSFLATLILGLVNFLGTLLAIFLIDRFGRR-----------KLLIIGLLLMAICSLILGIIFFLG------VS------ 342 (451)
T ss_pred ccccccccccccccccccccccccccccccc-----------cccccccccccccccccccccccc------cc------
Confidence 111 222333344445555566889999998 336667777777666654 11000 00
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCC
Q 008651 421 EPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLN 500 (558)
Q Consensus 421 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~ 500 (558)
++...+...+...............+..+.+..|..|.+.|++++++......+++.+++.+.+.+.+ +.+
T Consensus 343 ~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~---------~~~ 413 (451)
T PF00083_consen 343 SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN---------NLG 413 (451)
T ss_pred cccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc---------ccc
Confidence 00001222222122222223334457777888999999999999999999888888888887766542 211
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccc
Q 008651 501 RDKLNYFYWLLAGISVLNFGFYLACASWYRYKEVEIKQVE 540 (558)
Q Consensus 501 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 540 (558)
....+++.++++++..++.+++.+++++++.|+.+++
T Consensus 414 ---~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 414 ---GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ---ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 1234577788888888888888999999999887654
No 90
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.79 E-value=6.9e-18 Score=174.99 Aligned_cols=152 Identities=10% Similarity=0.072 Sum_probs=134.6
Q ss_pred HHHHHHhhhhcCCCchh-hhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTK-SATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
+++.+|+.+++|+|+++ .|.+.++|+.++.++.+++|+++|| +|.||++.++.+...+..++++++.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~----------- 113 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT----------- 113 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 56778999999999999 9999999999999999999999999 7999999999999999999999975
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
++..+.+.|++.|++.|+.. +...++..++|+++ |+++.++...+.++|.++++.++
T Consensus 114 ----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ 170 (511)
T TIGR00806 114 ----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLG 170 (511)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 99999999999987 99999999999999999999999
Q ss_pred HHhccccchhhHHHHH---HHHHHHHHHHHHH
Q 008651 173 VWISTNQGWDWSFGVC---TIAVLFATVFVIM 201 (558)
Q Consensus 173 ~~l~~~~gw~~~f~i~---~~~~~~~~~~~~~ 201 (558)
+++ ..+||++-+.+. .....+++++.++
T Consensus 171 qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 171 QLL-VTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHH-HhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 994 468998765544 3344445444433
No 91
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.79 E-value=1.8e-16 Score=170.93 Aligned_cols=357 Identities=10% Similarity=0.082 Sum_probs=207.8
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhh----cccCchHH-HHHHHHHHHHHHHHHHHh
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISD----TYLSRFKT-CVLFGCIELLGLAILAIQ 80 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~-l~~~~~~~~~~~~~~~~~ 80 (558)
.+.+..+..+++.|+++.+|+++..+|.+....-+.-.+..|+.|+++| | +||||. ++++.+...++..++...
T Consensus 19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~llf~~ 97 (473)
T PRK10429 19 DFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLLFSA 97 (473)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHHHcC
Confidence 3455556678899999999999999999999999999999999999999 5 699555 555666666665555321
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
|... +......+.+..++.+++.........++..|..++++ +|.+..++-...
T Consensus 98 ---p~~~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~ 151 (473)
T PRK10429 98 ---HLFE------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFF 151 (473)
T ss_pred ---CCCC------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHH
Confidence 1100 01134445556667788888888899999999986554 389999987777
Q ss_pred HHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCC
Q 008651 161 LTVGSIIGVTFIVWIST-------NQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLP 233 (558)
Q Consensus 161 ~~ig~~~g~~~~~~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (558)
.++|+.+.+.+...+.. ..+|+....+.++..++..+..+...++. .++++..+
T Consensus 152 ~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~-~~~~~~~~------------------ 212 (473)
T PRK10429 152 ASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV-YSSDNQVS------------------ 212 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec-CCcccccc------------------
Confidence 88886666555443311 12466665555555444443333322211 00000000
Q ss_pred CCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHH
Q 008651 234 KPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTL 313 (558)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (558)
++ .++.++.+..... .++ |.++..+...+...
T Consensus 213 -~~----------------------~~~~~~~~~~~~~------------------------~~n-~~~~~ll~~~~~~~ 244 (473)
T PRK10429 213 -AE----------------------GSHLTLKDIVALI------------------------YKN-DQLSCLLGMALAYN 244 (473)
T ss_pred -cc----------------------ccCCCHHHHHHHH------------------------hcC-HHHHHHHHHHHHHH
Confidence 00 0000000000000 011 11222221111111
Q ss_pred HHHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHH
Q 008651 314 FMNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~ 393 (558)
...........++..+..+.. . ..+.+.....+..+++.++.+++.+|+++| +.+.++..+.
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~~-~------~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~ 306 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGDA-D------LFPYYLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFP 306 (473)
T ss_pred HHHHHHhhheeeEEEEECCCH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHH
Confidence 222222222233333321111 0 011223333455677778888888888887 4455566655
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-------hhhHHHHHH
Q 008651 394 AVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-------AGMKSLSTA 466 (558)
Q Consensus 394 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g 466 (558)
.++.+.+..... ..+.+.+.+++..++.+++.+...+..+++..|.++ ++..|...|
T Consensus 307 ~~~~~~~~~~~~----------------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 307 VLSCGVLLLMGL----------------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHHHhc----------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 555444332100 001234455566677888888888888888888866 455677999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 467 ISWCSIAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 467 i~~~~~~lg~~lg~~l~~~i~~~~ 490 (558)
...+.+-+|..+++.+.+.+.+..
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999887544
No 92
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.9e-18 Score=168.18 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=138.3
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCc
Q 008651 22 GYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQ 101 (558)
Q Consensus 22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (558)
+.++-++++.|++..++.+.+.+..++.|.+.|| +|+|-.+++|++++....++.++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 3467788999999999999999999999999999 8999999999999999999999975
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008651 102 CDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGW 181 (558)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw 181 (558)
++++++++|.+||+|.++...+..++++|.||+++ +|++++|+.-.+..+|..+||.+||.+-+..|.
T Consensus 158 -------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 158 -------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred -------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 67799999999999999999999999999999997 599999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Q 008651 182 DWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 182 ~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
+.+|++.+...++...+-++..+
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999888777666655443
No 93
>PRK09848 glucuronide transporter; Provisional
Probab=99.78 E-value=2.6e-16 Score=168.49 Aligned_cols=351 Identities=11% Similarity=0.087 Sum_probs=196.2
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc---cCchHHH-HHHHHHHHHHHHHHHHh
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY---LSRFKTC-VLFGCIELLGLAILAIQ 80 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l-~~~~~~~~~~~~~~~~~ 80 (558)
.+.++.....+++.|+++.+|++..++|.+.+...+...+..++.|+++||. +||||.. +++.+...+...++...
T Consensus 20 ~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~ 99 (448)
T PRK09848 20 NNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWV 99 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhC
Confidence 3455555667888899999999999999999999999999999999999992 3777765 55555444444333211
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
. +... ........++..++.+++.+...+...++..+..++.+ +|.+..++-.++
T Consensus 100 ~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~~ 154 (448)
T PRK09848 100 P--TDWS------------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGIA 154 (448)
T ss_pred c--CCCC------------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHHH
Confidence 1 0000 01123344555667888888888888888888877654 267776665543
Q ss_pred -----HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCC
Q 008651 161 -----LTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKP 235 (558)
Q Consensus 161 -----~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (558)
.+++..++|.+.+.........+..+. .+..+++.+..+......+++.+++.+ .+
T Consensus 155 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~------------------~~ 215 (448)
T PRK09848 155 ASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVA------------------QP 215 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCcc------------------CC
Confidence 345556666665544322111111111 111111222111111111111000000 00
Q ss_pred CccchhhhhccccccccccccccccchhhhhH-hhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHH
Q 008651 236 EMADQLHEIHDREAGLDTEILKRTDQFRFLDR-AAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLF 314 (558)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (558)
+..+. .... ++++.....+..++....
T Consensus 216 ---------------------------~~~~~~~~l~-------------------------~n~~f~~~~~~~~~~~~~ 243 (448)
T PRK09848 216 ---------------------------SLKISLQTLK-------------------------RNRPLFMLCIGALCVLIS 243 (448)
T ss_pred ---------------------------CHHHHHHHHh-------------------------CCchHHHHHHHHHHHHHH
Confidence 00000 0000 111111111111111111
Q ss_pred HHHHhhcccceeeeecccccccccccccCCCCCCCcC-hhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHH
Q 008651 315 MNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIP-LVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLS 393 (558)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~ 393 (558)
+ ..+.....++..+..+.+.. .+.+...+ .+..+++.++.+++.+|+++| +.+.+|..+.
T Consensus 244 ~-~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----------~~~~~g~~~~ 304 (448)
T PRK09848 244 T-FAVSASSLFYVRYVLNDTGL-------FTVLVLVQNLVGTVASAPLVPGMVARIGKK-----------NTFLIGALLG 304 (448)
T ss_pred H-HHHhhhheeeEeeecCChHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHH
Confidence 1 12222223333332221111 01111122 334556677778888777766 5577788887
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchh-------hHHHHHH
Q 008651 394 AVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAG-------MKSLSTA 466 (558)
Q Consensus 394 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~g 466 (558)
.++.+.+.+.. ..+.++.++..++.++|++...+..++...+..|.+ .+|..+|
T Consensus 305 ~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 305 TCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 77766655421 124555566678899999999999989988888754 4699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008651 467 ISWCSIAFGYFLSSLVVEIVNKV 489 (558)
Q Consensus 467 i~~~~~~lg~~lg~~l~~~i~~~ 489 (558)
++++.+.+|..+++.+.+.+.+.
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 94
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.78 E-value=2.4e-16 Score=172.10 Aligned_cols=140 Identities=15% Similarity=0.066 Sum_probs=126.5
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCc
Q 008651 22 GYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQ 101 (558)
Q Consensus 22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (558)
+..+.+.....+..+.|.++..+++++.|.++|| +|||++++++.++.+++.+..+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 4567788889999999999999999999999999 8999999999999999999999975
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008651 102 CDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGW 181 (558)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw 181 (558)
+++.+.+.|++.|++.++...+...+++|.+++++ |+.+.++ ....-.++.+++.+++++.. +|
T Consensus 170 -------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~W 233 (521)
T KOG0255|consen 170 -------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DW 233 (521)
T ss_pred -------cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hH
Confidence 78999999999999999999999999999999997 9999999 77788888888888888877 89
Q ss_pred hhHHHHHHHHHHHHHHH
Q 008651 182 DWSFGVCTIAVLFATVF 198 (558)
Q Consensus 182 ~~~f~i~~~~~~~~~~~ 198 (558)
|+.+++..+..++.++.
T Consensus 234 r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 234 RWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999987776655544
No 95
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.77 E-value=3.1e-16 Score=166.53 Aligned_cols=428 Identities=11% Similarity=0.039 Sum_probs=233.0
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhc---ccCchHHHHHH-HHHHHHHHHHHHHhhh
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDT---YLSRFKTCVLF-GCIELLGLAILAIQAH 82 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grr~~l~~~-~~~~~~~~~~~~~~~~ 82 (558)
++|-....+++.|+ +++|++..+.+++..+..+...+.+|+.|+++|| .+||||.++++ .+...++..++.++..
T Consensus 18 ~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 18 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 44444455666676 6899999999999999999999999999999993 27999998875 5555566666666532
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
...+.. ............+.++++..+..++....++...++++|.+|+++. +++.+.++.....+
T Consensus 97 ~~~~~~----------~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 97 IGHLFG----------DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMA 162 (477)
T ss_pred hhhhcc----------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHH
Confidence 110000 0000000011223445555556677788888899999999998861 23689999999999
Q ss_pred HHHHHHHHHHHHh--ccc-------------cchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHH
Q 008651 163 VGSIIGVTFIVWI--STN-------------QGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAI 227 (558)
Q Consensus 163 ig~~~g~~~~~~l--~~~-------------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (558)
+|.++|+.++++. .+. .+.+..|++.++..++..++.....++.+..++++.+..+
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~--------- 233 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE--------- 233 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh---------
Confidence 9999999998875 221 1568899998877766655554433332211111000000
Q ss_pred hhCCCCCCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHH
Q 008651 228 HNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLP 307 (558)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (558)
.. + + ++ +..+..+.+.-... .+-.+...+.+.
T Consensus 234 ------~~-------~---~------~~--~~~~~~~~~i~~~~------------------------~~mP~~m~~l~~ 265 (477)
T TIGR01301 234 ------AA-------P---P------SK--HGEEAFFGELFGAF------------------------KYLPRPVWILLL 265 (477)
T ss_pred ------cc-------c---c------cc--cchhhhHHHHHHHH------------------------HHCCHHHHHHHH
Confidence 00 0 0 00 00000000000000 000111222222
Q ss_pred HHHHHHHHHHHhhcccceeeeec-cccccccc-ccccC---CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCCh
Q 008651 308 IIVSTLFMNTCLAQLQTFCIQQS-TTMDRNLF-GFKVP---GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQ 382 (558)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~---~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~ 382 (558)
..++.-+-|..+..+.+-+.-+. .+-+.... .+... ..+....+.+... +.+.+..++.||..+ .
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~------~ 335 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA------G 335 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc------c
Confidence 22222222223222333222110 00000000 00000 1111222233333 333344444444321 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcccccCCCCCccch-hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhch
Q 008651 383 LQRIGVGLVLSAVSMAVAAVVETKRKS---VAVEHNMVDSIEPLPMS-VFWLGFQYAIFGAADMFTLVGLLDFFYAESSA 458 (558)
Q Consensus 383 ~~~~~~g~~l~~i~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 458 (558)
+..-.++.++.+++++...+......+ .....+.+. ++.. .+..+..+.+.|+.........++++.+..|+
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN 411 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence 133367777888887777655321000 000001111 1112 35667778899999999888888999999995
Q ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 459 G--MKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYR 530 (558)
Q Consensus 459 ~--~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 530 (558)
+ ..|..+|+.|++..+.+.+.....|.+.+ .++ +.....+.+.++.+++++++.++..++.+
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~----~~g------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQ----LFG------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH----HcC------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4 45999999999999999998887776532 222 11223456677777788887777766543
No 96
>PRK09669 putative symporter YagG; Provisional
Probab=99.77 E-value=6.8e-16 Score=165.06 Aligned_cols=348 Identities=9% Similarity=0.061 Sum_probs=204.6
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc---cCchHH-HHHHHHHHHHHHHHHHHhhh
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY---LSRFKT-CVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~-l~~~~~~~~~~~~~~~~~~~ 82 (558)
+.+..+..+++.|+++.+|++..++|.+.+...+.-.+..|+.|+++||. +||||. ++.+.+...++..++...
T Consensus 23 ~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~-- 100 (444)
T PRK09669 23 LVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT-- 100 (444)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC--
Confidence 33455567888999999999999999999999999999999999999993 477555 556666666666544332
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
|... .......+++..++.+.+.........++.+|+.++++ +|.+..++.....+
T Consensus 101 -p~~~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~~~ 156 (444)
T PRK09669 101 -PDFG------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFALSF 156 (444)
T ss_pred -CCCC------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHHHH
Confidence 2110 01235556666666777766777778899999986654 38888888888888
Q ss_pred HHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCC
Q 008651 163 VGSIIGVTFIVWIST-------NQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKP 235 (558)
Q Consensus 163 ig~~~g~~~~~~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (558)
+|..+++.+...+.. ..+|+..+.+.+++.++..++.++..++. .+++++++ .
T Consensus 157 ~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~-~~~~~~~~-~------------------ 216 (444)
T PRK09669 157 IGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER-YTPEVDNS-S------------------ 216 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe-cCCCCcCC-C------------------
Confidence 888887665443322 34677777776665554444333322211 11100000 0
Q ss_pred Cccchhhhhccccccccccccccccchhhhh-HhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHH
Q 008651 236 EMADQLHEIHDREAGLDTEILKRTDQFRFLD-RAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLF 314 (558)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (558)
+..+ ..... +++. .+..+...+....
T Consensus 217 ---------------------------~~~~~~~~~~-------------------------~n~~-~~~l~~~~~~~~~ 243 (444)
T PRK09669 217 ---------------------------SVWKDLKLLL-------------------------GNSQ-WRIMFIFNVVLLT 243 (444)
T ss_pred ---------------------------CHHHHHHHHh-------------------------CCch-HHHHHHHHHHHHH
Confidence 0000 00000 0111 1111111111111
Q ss_pred HHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHH
Q 008651 315 MNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSA 394 (558)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~ 394 (558)
..........++..+..... .. ...+.....+..+++.++.+++.+|+++| +....+.++..
T Consensus 244 ~~~~~~~~~~y~~~~~~~~~------~~-~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----------~~~~~~~~~~~ 305 (444)
T PRK09669 244 AVVTRGGATLYYVNYVLLRP------DL-ATLFLVTGMIAGLFGALLSERLLGKFDRV-----------RAFKWTIVAFV 305 (444)
T ss_pred HHHHHhhhhheeeeeecCCH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHH
Confidence 11111122223222211100 00 11122222344556677788888888777 33455555444
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-------hhhHHHHHHH
Q 008651 395 VSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-------AGMKSLSTAI 467 (558)
Q Consensus 395 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi 467 (558)
++.+...... +.+.+.+++..++.+++.+...+..++...|..+ ++..|...|+
T Consensus 306 ~~~~~~~~~~-------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~ 366 (444)
T PRK09669 306 ILSALIFFIP-------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFST 366 (444)
T ss_pred HHHHHHHHhC-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHH
Confidence 3333222221 1244445666678999999998999999988876 3456788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 008651 468 SWCSIAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 468 ~~~~~~lg~~lg~~l~~~i~~~~ 490 (558)
+++...+|..+++.+.+.+.+..
T Consensus 367 ~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 367 NLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999887544
No 97
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.76 E-value=6.9e-16 Score=166.27 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=121.3
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
...++.+++|- .....|+.+.+.++..+..++.|.++|. ||||..++.+.++..+|.++++.+.
T Consensus 66 ~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~-------------- 129 (599)
T PF06609_consen 66 ILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ-------------- 129 (599)
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC--------------
Confidence 34578888985 5778899999999999999999999999 8999999999999999999999875
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
+...++.+..+.|+|.|.... ....++|..|.+. |.....+.....-+....++.++..+
T Consensus 130 -------------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 -------------NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred -------------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 678999999999999777664 5666899999876 77776666655555555677777777
Q ss_pred ccccchhhHHHHHHHHHHHHHHHH
Q 008651 176 STNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 176 ~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
..+.+|||.|++.++...++++..
T Consensus 190 ~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 190 AAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHH
Confidence 777899999999988766555443
No 98
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.76 E-value=2.6e-16 Score=168.98 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=205.5
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccC-----chHHHHHHHHHHH-HHHHHHHHhhhc
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLS-----RFKTCVLFGCIEL-LGLAILAIQAHA 83 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~ 83 (558)
+.+...++.++.+++|+|+++.+...+...+...+-++ +|.++|| ++ ||+.++++.++.. ++...++..
T Consensus 42 ~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--- 116 (468)
T TIGR00788 42 GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGK--- 116 (468)
T ss_pred HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccc---
Confidence 44555677888889999999999999988888888666 9999999 67 6777777765552 222222211
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+.......+.+++.+++.+....+..++..|..+ +++ ..++...++.+...++
T Consensus 117 -----------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~ 169 (468)
T TIGR00788 117 -----------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASAT 169 (468)
T ss_pred -----------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHH
Confidence 1123344457889999999999999999999998 432 1245567777777889
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhh
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHE 243 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (558)
|.++|+.++|.+.+..+|+..|++.+...++..+...+.+++.....|+..+... ..+
T Consensus 170 G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~----------------------~~~ 227 (468)
T TIGR00788 170 GGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE----------------------MNM 227 (468)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch----------------------hhh
Confidence 9999999999999999999999998777665544333322211001111000000 000
Q ss_pred hccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc
Q 008651 244 IHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ 323 (558)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 323 (558)
............+. .. ..| +....+.+...+.+.... +........
T Consensus 228 ----------~~~~~~~~~~~~~~--~~--------------~l~------~~l~~~~i~~~l~fifl~--~~~~~~~~~ 273 (468)
T TIGR00788 228 ----------ALLTLGVLANVKVQ--IL--------------GLR------GAIQLLEIAKPLIFIFLS--YANLPGASG 273 (468)
T ss_pred ----------hhhhhhHHHHHHHH--HH--------------HHH------HHHhcHHHHHHHHHHHHH--HhhcCCCCc
Confidence 00000000000000 00 000 000011111111111110 111111111
Q ss_pred ceeeeecccccccccccccCCCCC---CCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSL---PVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVA 400 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~ 400 (558)
+.+..+.. . + +.++... .....+..+++..+.+++.+|++ .++.+.++.++.+++.+..
T Consensus 274 ~~f~~~~~--~--l---G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~-----------~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 274 SVFCATTQ--C--L---PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFP-----------YRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred eeEEEEcc--c--C---CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHHHHHHhCc
Confidence 12222111 1 1 2223222 22233444444444444443333 3366777777777766443
Q ss_pred HHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 008651 401 AVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSS 480 (558)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~ 480 (558)
.... ++.+ ...+ ..+.+++....++.+++.++...+...++.+.+|++.+|+..++.+...++|+.+++
T Consensus 336 ~~l~-~~~~--~~~g--------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 336 LILV-KRWN--LAFG--------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred eeee-eccc--cccC--------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence 2110 0000 0000 012334455667888888888888889999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 008651 481 LVVEIVNK 488 (558)
Q Consensus 481 ~l~~~i~~ 488 (558)
.+++.+.+
T Consensus 405 ~~gg~l~~ 412 (468)
T TIGR00788 405 FLGVLLME 412 (468)
T ss_pred HHHHHHHH
Confidence 88888864
No 99
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.75 E-value=7e-16 Score=164.22 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=126.4
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCc
Q 008651 22 GYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQ 101 (558)
Q Consensus 22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (558)
+++++...+.+++.++|.+++.++.+++|.|.|| +.-.+.+....+++.+-.++.+...
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~-------------------- 132 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH-------------------- 132 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 5677888899999999999999999999999999 7977777777666665554444432
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------
Q 008651 102 CDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI------ 175 (558)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l------ 175 (558)
+++.+++.|+++|+..+..+|....+++.++.+++ |+.-+++++....+|.++|..+...+
T Consensus 133 -------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 133 -------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred -------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 78899999999999999999999999999999987 99999999999999999999988775
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccc
Q 008651 176 STNQGWDWSFGVCTIAVLFATVFVIMGKSL 205 (558)
Q Consensus 176 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 205 (558)
....||||.|++.+++.++..++.++..|.
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 345799999999998876666555554443
No 100
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.73 E-value=4.4e-17 Score=180.64 Aligned_cols=185 Identities=14% Similarity=0.135 Sum_probs=139.5
Q ss_pred hhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC-
Q 008651 9 FVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR- 87 (558)
Q Consensus 9 ~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~- 87 (558)
+.+........++++|+++.++.|++.+.|.+++.++.++.|+++|| +||||.+.++.+++++|.+++++......-+
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~ 126 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYS 126 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcc
Confidence 44555666678899999999999999999999999999999999999 7999999999999999999998753211000
Q ss_pred ---------------CCCCCCCCCCCcC------cCCCCC--chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCh
Q 008651 88 ---------------PKPCVGVAPNLVN------QCDDAD--GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDP 144 (558)
Q Consensus 88 ---------------~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~ 144 (558)
...|+.-..+... .|...+ ...+..++++|+++|+|.+...+...+++.|.+|+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~- 205 (633)
T TIGR00805 127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN- 205 (633)
T ss_pred ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc-
Confidence 0011000000000 000001 1246678899999999999999999999999999987
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc----------------------chhhHHHHHHHHHHHHHHHHH
Q 008651 145 KEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQ----------------------GWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 145 ~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~----------------------gw~~~f~i~~~~~~~~~~~~~ 200 (558)
|+.++++++....+|.++|+.+++++.+.+ +|+..|++.+++.++..+.++
T Consensus 206 -----~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 206 -----SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred -----cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887532 277778877766555444433
No 101
>PRK11462 putative transporter; Provisional
Probab=99.71 E-value=1.8e-14 Score=154.55 Aligned_cols=167 Identities=12% Similarity=0.125 Sum_probs=119.8
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhc---ccCchHHHHH-HHHHHHHHHHHHHHhh
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDT---YLSRFKTCVL-FGCIELLGLAILAIQA 81 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grr~~l~~-~~~~~~~~~~~~~~~~ 81 (558)
.+.+..+..++..|.++.+|+++..+|.+....-+.=++.-|+.|+++|| .+||||..++ +.+.+.++..++...
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~- 100 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST- 100 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC-
Confidence 34455555678889999999999999999999999999999999999997 2798877654 556666666555432
Q ss_pred hccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 008651 82 HAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSL 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (558)
|... .......+.+.-.+..++.........++.+|..++.+ +|.+..++...+.
T Consensus 101 --p~~s------------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~ 155 (460)
T PRK11462 101 --PDLS------------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLA 155 (460)
T ss_pred --CCCC------------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHH
Confidence 2110 01124445666667788888888889999999998765 4999999999999
Q ss_pred HHHHHHHHHHHHHhccc-------cchhhHHHHHHHHHHHHHHH
Q 008651 162 TVGSIIGVTFIVWISTN-------QGWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 162 ~ig~~~g~~~~~~l~~~-------~gw~~~f~i~~~~~~~~~~~ 198 (558)
++|..+++.+...+... .+|+....+.+++.++...+
T Consensus 156 ~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 156 TAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 99988887665544332 25666555555444444333
No 102
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.71 E-value=5e-16 Score=165.25 Aligned_cols=351 Identities=13% Similarity=0.116 Sum_probs=225.5
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhh----cccCchHHHH-HHHHHHHHHHHHHHHhh
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISD----TYLSRFKTCV-LFGCIELLGLAILAIQA 81 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~l~-~~~~~~~~~~~~~~~~~ 81 (558)
+.+.....++..|.++.+|+++..+|.+.....+...+..|+.|.++| | +||||..+ ++.++..++..++....
T Consensus 15 ~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~~ 93 (428)
T PF13347_consen 15 MIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSPP 93 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhccc
Confidence 344445567888999999999999999999999999999999999999 7 79887755 56666777666665431
Q ss_pred hcc-ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 82 HAH-QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
| ... .......+.+..++..++.........++..|..++++ +|.+..++-...
T Consensus 94 --p~~~~------------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~ 148 (428)
T PF13347_consen 94 --PAGLS------------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIF 148 (428)
T ss_pred --cchhh------------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHH
Confidence 1 000 01133345667777789999999999999999998765 399999998888
Q ss_pred HHHHHHHHHHHHHHhccc-------cchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCC
Q 008651 161 LTVGSIIGVTFIVWISTN-------QGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLP 233 (558)
Q Consensus 161 ~~ig~~~g~~~~~~l~~~-------~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (558)
.++|.++...+.+.+.+. .+|++..++.++..++..++.....++...+.+++++.
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~----------------- 211 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK----------------- 211 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc-----------------
Confidence 888887665555554322 16888877777666655555444333200000000000
Q ss_pred CCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHH
Q 008651 234 KPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTL 313 (558)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (558)
.++. ..+++.. ++++ ....+.......
T Consensus 212 ----------------------------~~~~--------------------~~~~~~~----~nr~-~~~l~~~~~~~~ 238 (428)
T PF13347_consen 212 ----------------------------ISLR--------------------DSLRSLF----RNRP-FRILLLAFFLQW 238 (428)
T ss_pred ----------------------------cccc--------------------cchhhhc----ccch-HHHHHHHHHHHH
Confidence 0000 0000000 1111 111111111111
Q ss_pred HHHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHH
Q 008651 314 FMNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~ 393 (558)
+.+........++..+..+.+ . ..+.+.....+..+++.++..++.+|+++| +.+..+.++.
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~------~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~~~~ 300 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE------G-LISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGLLLA 300 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc------h-hhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhhHHHH
Confidence 111111111122222211111 0 122334455677788888999999999888 4577888888
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-------hhhHHHHHH
Q 008651 394 AVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-------AGMKSLSTA 466 (558)
Q Consensus 394 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g 466 (558)
+++.++..+.. +.+.++..+..++.|++.+...+..+++..|..+ ++..|...|
T Consensus 301 ~~~~~~~~~~~-------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 301 ALGFLLLFFLG-------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHHHH-------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 88888777653 1367778888899999999888888888887776 355799999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 467 ISWCSIAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 467 i~~~~~~lg~~lg~~l~~~i~~~~ 490 (558)
++++...++..+++.+.+.+.+..
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998876543
No 103
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.71 E-value=4.3e-16 Score=167.32 Aligned_cols=418 Identities=11% Similarity=0.022 Sum_probs=252.0
Q ss_pred hhhhhhhHH---HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008651 6 SMSFVANMV---SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 6 ~~~~y~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~ 82 (558)
++..|++.. .+-..++++++.+..+++|+.+.......+..|+.+.+.|| +|.|++.+.|.++..+|.++..+++
T Consensus 55 ~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~- 132 (509)
T KOG2504|consen 55 NLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFAT- 132 (509)
T ss_pred HHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHh-
Confidence 344444442 44567788999999999999999999999999999999999 7999999999999999999999986
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHH-HHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTG-LYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSL 161 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (558)
+.+.+++. =++.|+|.|.....+...++.+|+++ |+.+.++-..+.
T Consensus 133 --------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~Gs 179 (509)
T KOG2504|consen 133 --------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGT 179 (509)
T ss_pred --------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccC
Confidence 45555554 45689999999999999999888865 999999999999
Q ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchh
Q 008651 162 TVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQL 241 (558)
Q Consensus 162 ~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (558)
.+|.++-|.+..++.+..|||..+++-+.+.+-.++.....+|.....+|. ..++... .....+......
T Consensus 180 G~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~ 249 (509)
T KOG2504|consen 180 GVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVESTPKPV 249 (509)
T ss_pred CcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------cccccccccccc
Confidence 999999999999999999999999887766655555555555433222222 0000000 000000000000
Q ss_pred hhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhc
Q 008651 242 HEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQ 321 (558)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 321 (558)
.. ...+......+....+.....+.....|.... ....+ .+..+..+++..+. +.....+. ..-..
T Consensus 250 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~d~~ll~~~~fl~----~~~~~~~~-~~g~~ 315 (509)
T KOG2504|consen 250 EL-RISERDSGLKKLSLSNLATLKRGPDKWRNSPL-------QAFLS-MLDLSLLKDPKFLL----LALSNLFA-YLGFN 315 (509)
T ss_pred cc-ccccCCCCCCcccccchhhhhhCCccccccch-------hhhhh-hhhHHHHcCchHHH----HHHHHHHH-HHHHH
Confidence 00 00000000000000000000000000000000 00000 00001111111111 11111111 11111
Q ss_pred ccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008651 322 LQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAA 401 (558)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~ 401 (558)
.+.++...+. + +.+.-....+.+..+..+..+++-++.+++.|+-..+ ......++.++.+++.++..
T Consensus 316 ~p~~~l~~~~--~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~---------~~~~~~~~ll~~gl~~~~~p 383 (509)
T KOG2504|consen 316 VPFVYLPSYA--K-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR---------ALVLFLLTLLIAGLARLFLP 383 (509)
T ss_pred HHHHHHHHHH--h-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc---------hHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 0 1000011223344455666778888888888876632 22556777777777776655
Q ss_pred HHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 402 VVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSL 481 (558)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~ 481 (558)
.. .+.+.++..-+++|+..+...........+..+.+.-+.+.|+..+.+.++..+|+.
T Consensus 384 ~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 384 FA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred Hh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcc
Confidence 54 255566667788888888888777778899999999999999999999999999999
Q ss_pred HHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 482 VVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 482 l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
+.+.+.+.+ +.|+..|++.+...+++++..+...
T Consensus 443 iag~~~d~t-----------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 443 IAGLLYDIT-----------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cceeeeecc-----------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 988776433 1244456667777777766555443
No 104
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.70 E-value=4.7e-15 Score=149.15 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=118.9
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
-.+.+.+++.|++|..|++.+..+|..++.+++++.|++.+| +|+|+.+++|+.++++|..+..=+++
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~----------- 100 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS----------- 100 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-----------
Confidence 357788999999999999999999999999999999999999 79999999999999999999975543
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
..++..++++.++.+.|.|..+.+++++++...|+++ -.+-+++.+....+|+++||.+++
T Consensus 101 -------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 101 -------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred -------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2378899999999999999999999999999999875 456667777788999999999998
Q ss_pred Hhcc
Q 008651 174 WIST 177 (558)
Q Consensus 174 ~l~~ 177 (558)
++..
T Consensus 162 ~lil 165 (422)
T COG0738 162 SLIL 165 (422)
T ss_pred HHHH
Confidence 8765
No 105
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.70 E-value=1.8e-14 Score=151.30 Aligned_cols=161 Identities=19% Similarity=0.045 Sum_probs=107.9
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHH--HHHHHHHHHHHhhHH-HHHhhcccCchHHHHHHHHHHHH-HHHHHHHhhhccc
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATT--LTNFTGTAFLLALFG-GFISDTYLSRFKTCVLFGCIELL-GLAILAIQAHAHQ 85 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~ 85 (558)
.-....+|.|+ ++.|.|.++.|.. .........+.+|+. ++.+|| +||||..++...+... ....++... +
T Consensus 18 ~~~~p~lp~~l-~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~--~- 92 (390)
T TIGR02718 18 GLAMDALPTLL-REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVG--P- 92 (390)
T ss_pred HHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCC--c-
Confidence 33445677777 5679999999997 455677777777777 668999 7999997666533222 222222111 1
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
.......++....+.++..+...+...++..|..++++ ++.+.+...++..+|.
T Consensus 93 --------------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~ 146 (390)
T TIGR02718 93 --------------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGF 146 (390)
T ss_pred --------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHH
Confidence 00112233344445556666666777777777666554 6777788888889999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
++|+...+++.+..|||..|++.++..++..+..+.
T Consensus 147 ~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 147 FGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988899999999999999988776555444433
No 106
>PTZ00207 hypothetical protein; Provisional
Probab=99.70 E-value=7.8e-14 Score=151.33 Aligned_cols=149 Identities=17% Similarity=0.035 Sum_probs=119.2
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
.....+++++|+|..+.+++.+... ...++.+++|+++|| +|||++++++.+++.+|.++++++.. ...
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~--~~i------- 116 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQ--EVI------- 116 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhc--ccc-------
Confidence 3445788999999999999988744 445677789999999 79999999999999999999998631 000
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII-GVTFIV 173 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~-g~~~~~ 173 (558)
..+.+.+.+.|++.|+|.+...+.....+.++||+ + |+++.++.....++|+++ ++...+
T Consensus 117 ------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 117 ------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred ------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12688999999999999999999999999999984 3 999999999999999975 555555
Q ss_pred HhccccchhhHHHHHHHHHHHH
Q 008651 174 WISTNQGWDWSFGVCTIAVLFA 195 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~~~~~~ 195 (558)
++. .+|+..|++.++..++.
T Consensus 178 l~~--~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 178 FFS--DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHH--HhHHHHHHHHHHHHHHH
Confidence 554 36777777766654443
No 107
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.70 E-value=3.7e-15 Score=148.02 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=104.8
Q ss_pred CchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 27 SLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 27 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
+..-+|.+-+.|.+++++.++..|.++|| +|||++++.+.+..++...+.+.+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~------------------------- 119 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR------------------------- 119 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 44568899999999999999999999999 6999999999999999999988875
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST 177 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 177 (558)
++..++++|++.|+..|-.. .+.++++|.+++++ |+.+++.......+|.++||.+||++.+
T Consensus 120 --~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 --NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 67677778999999987654 46799999999987 9999999999999999999999999987
No 108
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.69 E-value=2.3e-15 Score=148.42 Aligned_cols=413 Identities=13% Similarity=0.042 Sum_probs=234.3
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
.+.+-+....|.+..+...+......+..+++..+|.++|+ +||||.+........+...+-+.++
T Consensus 99 ~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp------------- 164 (528)
T KOG0253|consen 99 LILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP------------- 164 (528)
T ss_pred HHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC-------------
Confidence 33445666789999999999999999999999999999999 7999999888766666555555542
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
++..+++.|.+.|+|.|+ .|...++-.|..|..+ |..-.-.. ....+|.+....+.=.
T Consensus 165 --------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~ 222 (528)
T KOG0253|consen 165 --------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWG 222 (528)
T ss_pred --------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHH
Confidence 677899999999999999 8999999999999887 66665555 6778899888777777
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccc-ccccc
Q 008651 175 ISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDRE-AGLDT 253 (558)
Q Consensus 175 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 253 (558)
+..+.||||..........+...+.++..+..+..--++++.+. ...+-.+.+-.+..+|.-..+...+++.| +....
T Consensus 223 vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kA-letL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~ 301 (528)
T KOG0253|consen 223 VMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKA-LETLHKIARMNGKQLPLGVLESSAIDRQEQEESDL 301 (528)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHH-HHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhch
Confidence 77788999977766544333333333322211111112222221 12222233333334454443333333222 11111
Q ss_pred cc-cccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHH-------hhcccc-
Q 008651 254 EI-LKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTC-------LAQLQT- 324 (558)
Q Consensus 254 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~- 324 (558)
.+ ..+..+.+ .+.-...... .-+|+.+..+..++.+...+.- ..|...
T Consensus 302 ~~~~~~a~ke~---------------------rg~~~nLlsp--~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~ 358 (528)
T KOG0253|consen 302 DDSKSSAAKEV---------------------RGGTTNLLSP--KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDA 358 (528)
T ss_pred hhhhhcccccc---------------------ccchHhhcCh--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc
Confidence 00 00000000 0000000000 1223332332222222221111 111111
Q ss_pred ---eeeeeccccccccc-ccccCCCCCCC-cChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH
Q 008651 325 ---FCIQQSTTMDRNLF-GFKVPGPSLPV-IPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAV 399 (558)
Q Consensus 325 ---~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~ 399 (558)
+.-.....++.... ........... +....-+.+..+.++++||+||| +.+....++.+++.+.
T Consensus 359 c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK-----------kTMal~l~~f~iflfl 427 (528)
T KOG0253|consen 359 CPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK-----------KTMALSLILFGIFLFL 427 (528)
T ss_pred cccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch-----------hHHHHHHHHHHHHHHH
Confidence 00000001111000 00000001100 11222234445667889999999 5577777777776665
Q ss_pred HHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 008651 400 AAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLS 479 (558)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg 479 (558)
..... +.....+..+..-+.....+...+.|..|.+|...|+++.|.....+.+|+.+.
T Consensus 428 l~~c~---------------------~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~ 486 (528)
T KOG0253|consen 428 LTTCK---------------------TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFS 486 (528)
T ss_pred HHHhc---------------------CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhh
Confidence 54432 111222223334444455567777899999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 008651 480 SLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYKE 533 (558)
Q Consensus 480 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 533 (558)
|.+. .....+ ......+.+++++++++...++.-++|+|.
T Consensus 487 p~iA-~~~e~s-------------~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 487 PVIA-MRAELS-------------TSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hHHH-HHhccc-------------eeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 9887 433211 111134677788888888888887777764
No 109
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.5e-14 Score=141.85 Aligned_cols=331 Identities=15% Similarity=0.170 Sum_probs=231.2
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..+..-+.+++|+|.+++|.+++.-.++..+.+++..+++.| +|..|.+..++++.++|.++=...
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~------------- 97 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG------------- 97 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 345567889999999999999999999999999999999999 899999999999999998887664
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+...++.+-.+.|+|.+..+...++++-+-||++ -+..+++|....++|+++++.+..
T Consensus 98 ---------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lav 155 (395)
T COG2807 98 ---------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAV 155 (395)
T ss_pred ---------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhh
Confidence 4568899999999999999999999999999987 689999999999999999999999
Q ss_pred Hhcccc-chhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccccc
Q 008651 174 WISTNQ-GWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLD 252 (558)
Q Consensus 174 ~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (558)
.+.++. |||..+.+=++..++++++++... .+++.+..+. +.
T Consensus 156 pla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r~~~~~~~~-------------------~~---------------- 198 (395)
T COG2807 156 PLAQHSGGWRGALGFWALLALLALLIWLPQA--LREQAASIAT-------------------KL---------------- 198 (395)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--cccccccccc-------------------cc----------------
Confidence 998887 799988776666666666655321 1111110000 00
Q ss_pred ccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeeccc
Q 008651 253 TEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTT 332 (558)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (558)
.+ ....|+ +.......+.+-..+..++..+.+++.++..+.
T Consensus 199 ---------------------~~--------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-- 239 (395)
T COG2807 199 ---------------------VS--------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG-- 239 (395)
T ss_pred ---------------------cc--------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--
Confidence 00 001232 111122334445667788888888888766552
Q ss_pred ccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008651 333 MDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAV 412 (558)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~ 412 (558)
++.. ..+.+..+..+..+..+.+.-.+..|...+ +.......+++.++..-+.+.+
T Consensus 240 ~sa~------~aG~llsl~~l~~~~~~ll~P~la~R~~n~----------r~~~~~~~~~~l~G~~G~~~~P-------- 295 (395)
T COG2807 240 LSAA------EAGSLLSLMQLAQLPTALLIPLLARRSKNQ----------RPLVVLALLLMLVGLVGLLLAP-------- 295 (395)
T ss_pred CCHH------HhhhHHHHHHHHHHHHHHHHHHHHHHhccc----------chHHHHHHHHHHHHHHHHHHhh--------
Confidence 2211 233333344444455555555555543222 2445555566666655555442
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008651 413 EHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-AGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSG 491 (558)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~ 491 (558)
....++| .+++|+|.+..+|....++...++ ++..+.-.|+.+...++=..+||.+.|++.|.++
T Consensus 296 ----------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 296 ----------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred ----------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 1122333 488999999999999888877665 4555666777777777777789999999986654
Q ss_pred Ccc
Q 008651 492 GWL 494 (558)
Q Consensus 492 ~~~ 494 (558)
+|-
T Consensus 362 sw~ 364 (395)
T COG2807 362 SWS 364 (395)
T ss_pred ChH
Confidence 443
No 110
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.66 E-value=8.3e-14 Score=145.99 Aligned_cols=367 Identities=14% Similarity=0.105 Sum_probs=197.0
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
++++.|++ +.|+|..|+|.+.+...+...+.+++.|+++||+..+||.+.+..++.++.........
T Consensus 23 p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~------------ 89 (400)
T PF03825_consen 23 PYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS------------ 89 (400)
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 56777875 56899999999999999999999999999999954567777766665555544444432
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH-H
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF-I 172 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~-~ 172 (558)
+++.+++..++..+......|...++..+...++ ++-++-......+|-+++... +
T Consensus 90 ---------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~--------~~~YG~iRlwGSiGf~~~~~~~~ 146 (400)
T PF03825_consen 90 ---------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR--------GKDYGRIRLWGSIGFIVAALAFG 146 (400)
T ss_pred ---------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc--------cCCCCcchhhhhHHHHHHHHHHH
Confidence 4556666777778888888888888888776633 222333333445555555332 2
Q ss_pred HHhccccc---hhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccc
Q 008651 173 VWISTNQG---WDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREA 249 (558)
Q Consensus 173 ~~l~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (558)
+++....+ ....+++.+...++.... .+..|+.+ ++++. +++
T Consensus 147 ~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~---~~~~~-------------------~~~------------ 191 (400)
T PF03825_consen 147 GLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTP---PKRSA-------------------KES------------ 191 (400)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCc---ccccc-------------------CCC------------
Confidence 33332222 234555554432222211 12222221 11100 000
Q ss_pred cccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceeeee
Q 008651 250 GLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQ 329 (558)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
.++....+...+. ++++.+.-++..++....+.. ++.+.+.+..+
T Consensus 192 ---------~~~~~~~~~~~ll-------------------------k~~~~~~Fll~~~l~~~~~~~-~~~f~~~yl~~ 236 (400)
T PF03825_consen 192 ---------VKKLLGLDALKLL-------------------------KNPRFLVFLLAAFLIGISHAA-YYTFFSIYLQE 236 (400)
T ss_pred ---------cccccchHHHHHh-------------------------cCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 0000000000000 111111111111111212211 11122222222
Q ss_pred cccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 330 STTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKS 409 (558)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~ 409 (558)
... .+.........+. .+.=...-...+|+-+|+ +..+.+.++.+..++=..+++...
T Consensus 237 ~gg---------~~~~~~g~~~~l~-~~aEi~~f~~~~~~~~r~-------g~~~ll~~a~~~~~vR~~l~a~~~----- 294 (400)
T PF03825_consen 237 LGG---------YSGSTIGILWALG-VVAEIPFFFFSGRFLKRF-------GIKWLLLLALVAYAVRWLLYAYFS----- 294 (400)
T ss_pred ccc---------chhhHHHHHHHHH-HHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 110 0011111111111 111112223445555553 445778888888888887777652
Q ss_pred hhhcccccCCCCCccch--hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 008651 410 VAVEHNMVDSIEPLPMS--VFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWC-SIAFGYFLSSLVVEIV 486 (558)
Q Consensus 410 ~~~~~~~~~~~~~~~~~--~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~lg~~lg~~l~~~i 486 (558)
.+.. ....+....++|+..++.......|+.+.+|++.|++++++++. ...+|..+|..++|++
T Consensus 295 -------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 295 -------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred -------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0111 11223345679999999999999999999999999999999876 4679999999999988
Q ss_pred hhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 487 NKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACAS 527 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 527 (558)
.+.- +.+. ...+..++.+.+++.++..++++++.|
T Consensus 362 ~~~~----g~~~--~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 362 YDAF----GARG--MFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHh----cchh--hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7321 1000 111334455666666666666665543
No 111
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.64 E-value=2e-14 Score=148.47 Aligned_cols=367 Identities=12% Similarity=0.076 Sum_probs=203.3
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHH--HHH-HHHHHhhhccccCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIEL--LGL-AILAIQAHAHQLRPKP 90 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 90 (558)
++++.++++..|+|.+|+|.+.++..+...+.+|+.|.++|| +|.||-++..+.+.. .+- ....+.+.++
T Consensus 28 pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~------ 100 (412)
T PF01306_consen 28 PFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ------ 100 (412)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH------
T ss_pred HHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 567889998899999999999999999999999999999999 797776655443322 222 2222221100
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
.-++++.++-++..+....+..+.. |.+-++.. .+.+-=+|-..+...+|.+++..
T Consensus 101 --------------------~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s---r~~~feYG~~R~wGSig~ai~s~ 156 (412)
T PF01306_consen 101 --------------------SNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS---RRNGFEYGRARMWGSIGFAIASL 156 (412)
T ss_dssp --------------------TT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH---HHHSS-HHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHH---HHhcCCcchHHHHhhHHHHHHHH
Confidence 1123333333444344333333333 32221110 01122233355677899999999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccc
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAG 250 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (558)
++|.+.+ .+-+..||+.....++..++.+..++..+++.+..+.
T Consensus 157 ~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~----------------------------------- 200 (412)
T PF01306_consen 157 LAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA----------------------------------- 200 (412)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-----------------------------------
T ss_pred Hhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-----------------------------------
Confidence 9999876 4667889987665444444433333221111000000
Q ss_pred ccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccc-eeeee
Q 008651 251 LDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQT-FCIQQ 329 (558)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 329 (558)
...+.++.+..|..... ++ ++.+.+..+.......+..+.|..+ ++..+
T Consensus 201 ----~~~~~~~~~~~~~~~l~-------------------------k~-~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~ 250 (412)
T PF01306_consen 201 ----LGAKKDKVSLKDVLSLF-------------------------KM-RNFWFFVLFVIGVAAIYDVFDQQFPIYFASF 250 (412)
T ss_dssp ----SSS------HHHHHHHT-------------------------TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----cccCCCCCcHHHHHHHh-------------------------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111111111 12 2233333333433344444444433 32221
Q ss_pred cccc--cccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 330 STTM--DRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKR 407 (558)
Q Consensus 330 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~ 407 (558)
-... .... -+.+..+..+.-++...+..++.+|++.| +.+.++..++++=....++.+
T Consensus 251 f~~~~~g~~~------~G~l~s~~v~~E~~~m~~~p~li~rig~k-----------~~Lllag~i~~iRi~~~~~~~--- 310 (412)
T PF01306_consen 251 FQSAGQGNQM------YGYLWSVQVFLEALMMFFSPWLINRIGAK-----------NLLLLAGVIMAIRIIGSGFAT--- 310 (412)
T ss_dssp SSSHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHHHHHHHHHT-----
T ss_pred hcccccChhH------HhHHHHHHHHHHHHHHHHHHHHHHhcChH-----------hHHHHHHHHHHHHHHHHhhhc---
Confidence 1110 0000 01112222222234444555666666665 668888888888877777653
Q ss_pred hhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 008651 408 KSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAIS-WCSIAFGYFLSSLVVEIV 486 (558)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~lg~~l~~~i 486 (558)
+++++.+.-.+.++-..+......=|+.+..|++..++...+. ++..++|..+.+.+.|.+
T Consensus 311 ------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 311 ------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp ------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 7778888999999999999999999999999999999998885 678889999999998988
Q ss_pred hhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 487 NKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACAS 527 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 527 (558)
. |++ +....|++++.+.++..++..+..+
T Consensus 373 y---------d~~---G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 373 Y---------DRI---GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp H---------HHH---HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred H---------hhc---CcHHHHHHHHHHHHHHHHHheeeec
Confidence 6 222 2334567888887777666666543
No 112
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.9e-15 Score=143.89 Aligned_cols=374 Identities=13% Similarity=0.157 Sum_probs=227.9
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
-+..++.++.+++.++.-++.+.|+.-..+.+.++|++.||.+|-|..-++-.+...+|.++.+.....
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~----------- 133 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS----------- 133 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH-----------
Confidence 356677788888888999999999999999999999999999998877666666777788777765432
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
.++|++..+|++.|+|.-....+.+++...+|+.++ .+-++++......+|+.....+.++
T Consensus 134 -------------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ 194 (459)
T KOG4686|consen 134 -------------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPF 194 (459)
T ss_pred -------------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHH
Confidence 278999999999999998888999999999999988 9999999999999999988888888
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccccccc
Q 008651 175 ISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGLDTE 254 (558)
Q Consensus 175 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (558)
+.+..+--.+ ...-..+++.+++-.+. .....+....... . +.+.-...++||...+++
T Consensus 195 ly~~~~~~~~---~~ghT~LG~~l~~~~~t-------------c~~slical~lg~----~-D~rAerilh~e~g~~Ge~ 253 (459)
T KOG4686|consen 195 LYDTMGRMFP---GVGHTLLGLWLCFEVKT-------------CKQSLICALSLGL----S-DDRAERILHLEEGFLGEE 253 (459)
T ss_pred HHHHHHHhcc---cchHHHHHHHHHHHHHH-------------HHHHHHHHHHhhh----h-hhHHHHHHhhhcCcccCC
Confidence 8765441110 00111112111111000 0000000000000 0 000000001111111111
Q ss_pred ccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHH-hhHHHHHHHHHHHHHhhcccc---eeeeec
Q 008651 255 ILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILL-RMLPIIVSTLFMNTCLAQLQT---FCIQQS 330 (558)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 330 (558)
.. .++++... .+..+.+....++.......+ .+.+.
T Consensus 254 pk---------------------------------------Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~- 293 (459)
T KOG4686|consen 254 PK---------------------------------------LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQK- 293 (459)
T ss_pred cc---------------------------------------cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHH-
Confidence 00 01111000 011122233333333222211 12111
Q ss_pred ccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 331 TTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSV 410 (558)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~ 410 (558)
..|-.....+.+.........+..|+.+.+.|++|++. +.+..+.+...++=....+..
T Consensus 294 -----rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~------ 352 (459)
T KOG4686|consen 294 -----RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF------ 352 (459)
T ss_pred -----hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh------
Confidence 11100122233333334556778889999999999985 333333333333222222211
Q ss_pred hhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 411 AVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~ 490 (558)
.+++ ..+.++|+...+.....|-.+...+|+++-|++.|..++.+++|-.+.+.+.+++.+.+
T Consensus 353 --------------lsPy---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 353 --------------LSPY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD 415 (459)
T ss_pred --------------ccHH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence 2332 36688899999988889999999999999999999999999999999999999988654
Q ss_pred CCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 008651 491 GGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 491 ~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
++ +...+.+|...+.+++....+.+..
T Consensus 416 g~--------y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 416 GS--------YDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred Cc--------hhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 22 2335567777777777666655544
No 113
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.61 E-value=5.2e-15 Score=150.31 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=102.7
Q ss_pred CCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCC
Q 008651 26 FSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDA 105 (558)
Q Consensus 26 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (558)
..+.-.+.+..+-.++..+++++.|+++|| +|||+++...++++.+++++++.+-..+ +
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~---~----------------- 139 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTT---S----------------- 139 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCC---C-----------------
Confidence 345566777888899999999999999999 7999999999999999999766642110 0
Q ss_pred CchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH----HHHHHHhccc---
Q 008651 106 DGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG----VTFIVWISTN--- 178 (558)
Q Consensus 106 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g----~~~~~~l~~~--- 178 (558)
...-...+...|++.|+|.|+-.|...+..+|....+. |+...+......+.|...| .++.......
T Consensus 140 ~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~ 213 (538)
T KOG0252|consen 140 PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNG 213 (538)
T ss_pred CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCC
Confidence 01246778899999999999999999999999977765 8777666554444444444 3333333211
Q ss_pred --------cchhhHHHHHHHHHH
Q 008651 179 --------QGWDWSFGVCTIAVL 193 (558)
Q Consensus 179 --------~gw~~~f~i~~~~~~ 193 (558)
.-||..|.+.++..+
T Consensus 214 ~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 214 PSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH
Confidence 238888877655433
No 114
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.6e-12 Score=134.28 Aligned_cols=357 Identities=12% Similarity=0.122 Sum_probs=223.8
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc---cCchHH-HHHHHHHHHHHHHHHHHhhh
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY---LSRFKT-CVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~-l~~~~~~~~~~~~~~~~~~~ 82 (558)
+.+=.+..++..|.+..+|+++..+|.+..+.=+.=++.-|+.|.+.||. +||+|. ++++.+.+++...++-.+++
T Consensus 26 ~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~ 105 (467)
T COG2211 26 FAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD 105 (467)
T ss_pred HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC
Confidence 44445667888899999999999999999999999999999999999974 687777 45555667777777665431
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
. ....+....++...+.+++...+.-.-.++.++..++.+ +|.+..++-....+
T Consensus 106 ~---------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~ 159 (467)
T COG2211 106 F---------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFAS 159 (467)
T ss_pred c---------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHH
Confidence 0 011245566777888999999999999999999998776 49999999999999
Q ss_pred HHHHHHHHHHHHhc----c---ccchhhHHHHHHHHHHHHHHHHHHhcc-cccccCCCCChhHHHHHHHHHHHhhCCCCC
Q 008651 163 VGSIIGVTFIVWIS----T---NQGWDWSFGVCTIAVLFATVFVIMGKS-LYRHNVPKGSPIIRILQVFVAAIHNRNLPK 234 (558)
Q Consensus 163 ig~~~g~~~~~~l~----~---~~gw~~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (558)
+|..+...+.+.+. + ..||+..-++.+++..+..+.++...+ +..++.|.++
T Consensus 160 ~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-------------------- 219 (467)
T COG2211 160 LGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-------------------- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc--------------------
Confidence 99776655544432 2 357777766666655555554444322 2111111110
Q ss_pred CCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHH
Q 008651 235 PEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLF 314 (558)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (558)
+.+.++.+..... .+++. ++..+...++...
T Consensus 220 ------------------------~~~~~~~~~~~~~------------------------~~Nrp-~~~~l~~~l~~~~ 250 (467)
T COG2211 220 ------------------------GVKLKLKDSFLLI------------------------FKNRP-LLLLLLMNLLLFI 250 (467)
T ss_pred ------------------------cccccHHHHHHHH------------------------Hccch-HHHHHHHHHHHHH
Confidence 0000000000000 01111 1111111111111
Q ss_pred HHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHH
Q 008651 315 MNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSA 394 (558)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~ 394 (558)
...+......++..+.. +.. ...............+++.++..++.+|+++| +.+.++.++..
T Consensus 251 ~~~i~~s~~~yy~~y~l--g~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~~ 313 (467)
T COG2211 251 AFNIRGSIMVYYVTYVL--GDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLLA 313 (467)
T ss_pred HHHHHhhhhheeEEEEc--CCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHHH
Confidence 11111112223333321 111 11122222233344445577788888888887 66888888888
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc-------hhhHHHHHHH
Q 008651 395 VSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS-------AGMKSLSTAI 467 (558)
Q Consensus 395 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi 467 (558)
++.+...+.+ ..+..++++..++.++|.+...+..++.+.+... ++..|...|.
T Consensus 314 i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~ 374 (467)
T COG2211 314 VGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG 374 (467)
T ss_pred HHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence 8887776652 2356666777788899999988888888776654 3567888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCccc
Q 008651 468 SWCSIAFGYFLSSLVVEIVNKVSGGWLA 495 (558)
Q Consensus 468 ~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 495 (558)
..+++=+|..++..+.+++.... |+.+
T Consensus 375 ~tF~~K~g~ala~~~~g~~L~~~-Gyv~ 401 (467)
T COG2211 375 MTFFRKLGLALAGFIPGWILGAI-GYVP 401 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence 99999999999999988887433 4443
No 115
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.54 E-value=1.6e-11 Score=131.33 Aligned_cols=358 Identities=10% Similarity=0.029 Sum_probs=197.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHH-HHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchh
Q 008651 31 SATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCI-ELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQ 109 (558)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (558)
.++..++..+...+..|+-|-++|+ -|+||.++....+ ..+..+.+.+.. +.+
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~-------------------------~~~ 125 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS-------------------------PGQ 125 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC-------------------------cch
Confidence 3567778888999999999999998 5877766555444 445555555542 124
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhhccCCCCChh--------------------hhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 110 VAILFTGLYLFACGTGGVKAALPSLGADQFDERDPK--------------------EAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 110 ~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~--------------------~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
++...+..++..++.+......++++.|..++++.. +..+|++..+.-+...++|+++.-
T Consensus 126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l 205 (477)
T PF11700_consen 126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL 205 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 445555555666777788888899999998877520 001128888888888888888776
Q ss_pred HHHHHhcc--------ccchhhHHHHHHHH-HHHHHHHHHHhccccc-ccCCCC-ChhHHHHHHHHHHHhhCCCCCCCcc
Q 008651 170 TFIVWIST--------NQGWDWSFGVCTIA-VLFATVFVIMGKSLYR-HNVPKG-SPIIRILQVFVAAIHNRNLPKPEMA 238 (558)
Q Consensus 170 ~~~~~l~~--------~~gw~~~f~i~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (558)
.++-.+.. ..+-|..+.+.++. .++++..++..+++.+ +..|.. +....-.+-++..+|+.
T Consensus 206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~-------- 277 (477)
T PF11700_consen 206 LISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEI-------- 277 (477)
T ss_pred HHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH--------
Confidence 55444321 12347777776665 3334444443333221 111111 11111111111111100
Q ss_pred chhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHH
Q 008651 239 DQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTC 318 (558)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (558)
.+.+.+..+ .+...++.-.
T Consensus 278 ----------------------------------------------------------~~~~~~~~f---Lia~~l~~dg 296 (477)
T PF11700_consen 278 ----------------------------------------------------------RKLRQLFLF---LIAYFLYSDG 296 (477)
T ss_pred ----------------------------------------------------------HhChHHHHH---HHHHHHHHHH
Confidence 111111111 1111111111
Q ss_pred hhcc---cceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHH
Q 008651 319 LAQL---QTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAV 395 (558)
Q Consensus 319 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i 395 (558)
.+.. ...+..+..+++.. ....+..+..+..++++.+.+++.||++.|. .+.+.+..++..+
T Consensus 297 ~~ti~~~~~i~a~~~lg~s~~------~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---------~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 297 VNTIISFAGIYATEVLGMSTT------QLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---------KRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHhcCcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---------hHHHHHHHHHHHH
Confidence 1111 11122211122211 1112233334556677777777777777652 1233333333322
Q ss_pred HHHHHHH--HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 008651 396 SMAVAAV--VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIA 473 (558)
Q Consensus 396 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ 473 (558)
..++..+ ... . ....+.+...+..++.|+..+...+..-++..++.|++.++...|++.++.-
T Consensus 362 i~~~g~~G~~~~-------~--------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk 426 (477)
T PF11700_consen 362 IPLYGLFGFWPS-------F--------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGK 426 (477)
T ss_pred HHHHHHHHhhhc-------c--------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 2222211 110 0 0012344455566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 008651 474 FGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLA 524 (558)
Q Consensus 474 lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 524 (558)
..+.+||.+.+.+.+.+ + ....-+..+.++.+++.++.+.
T Consensus 427 ~ss~lGPll~g~i~~~t---------g--~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 427 ASSWLGPLLFGLITDAT---------G--SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHh---------C--CchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999997543 1 1222345566666666665543
No 116
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.45 E-value=1.8e-10 Score=117.34 Aligned_cols=343 Identities=15% Similarity=0.041 Sum_probs=198.7
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccC-----chHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 22 GYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLS-----RFKT-CVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
.++++...-.+.++....+.+. ..+..|+.+|++ + ||.. ++.|..++..+..+..++...- ..
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l--~~------- 76 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL--AE------- 76 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH--cc-------
Confidence 4678877777777777666555 588999999994 6 6655 4555566666677766664210 00
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
.....+...........+..++.|+|.+...++..++++|..|+++ |+++.++.+.+.-+|.+++..+.+.+
T Consensus 77 --~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 77 --SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred --cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111112233455666778999999999999999999999987 99999999999999999999999988
Q ss_pred ccccchhhHH-HH---HHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccc
Q 008651 176 STNQGWDWSF-GV---CTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGL 251 (558)
Q Consensus 176 ~~~~gw~~~f-~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (558)
.+.++-.-.. .+ +.+...+.++..+-..++.+...+. ++
T Consensus 149 L~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~----------------------~~--------------- 191 (403)
T PF03209_consen 149 LDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA----------------------AE--------------- 191 (403)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC----------------------CC---------------
Confidence 7776643222 22 2222222222222111111110000 00
Q ss_pred cccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHH-HHHHHHHHhhcccceeeeec
Q 008651 252 DTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIV-STLFMNTCLAQLQTFCIQQS 330 (558)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 330 (558)
.++.++.+..... . .+ +...+++.+.. ....+++.-.-+.+ |
T Consensus 192 -------~~~~~f~~a~~~~--------------------~----~~-~~a~~f~~fl~l~t~a~~~QD~iLEP-y---- 234 (403)
T PF03209_consen 192 -------RPRPPFREAWRQV--------------------W----AS-PQARRFFVFLFLGTLAFFMQDVILEP-Y---- 234 (403)
T ss_pred -------CCCccHHHHHHHH--------------------H----hC-CChhHHHHHHHHHHHHHHhhHHHcCC-c----
Confidence 0000111111100 0 00 01111222222 11212111000001 0
Q ss_pred ccccccccccccCCC---CCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 331 TTMDRNLFGFKVPGP---SLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKR 407 (558)
Q Consensus 331 ~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~ 407 (558)
.-+++ +++.+ .++.....+.+++..+.+++..|-. +..+....|..+..+++.......
T Consensus 235 ---gg~Vf--gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~----------~~~~~a~~G~~~~~~~f~lii~a~--- 296 (403)
T PF03209_consen 235 ---GGEVF--GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL----------GKKRTAALGCLLGALAFALIILAG--- 296 (403)
T ss_pred ---hhHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CchHHHHHHHHHHHHHHHHHHHHH---
Confidence 11111 22222 2333334555666666666554211 222344566666666665554432
Q ss_pred hhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 408 KSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
...+.+.+-+..+++|++.+.......+...+..+++..|..+|.|...+.++..++..+.+.+.
T Consensus 297 ---------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 297 ---------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred ---------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12256667788899999999999999999999999999999999999999999999999999887
Q ss_pred hcc
Q 008651 488 KVS 490 (558)
Q Consensus 488 ~~~ 490 (558)
|..
T Consensus 362 D~~ 364 (403)
T PF03209_consen 362 DLV 364 (403)
T ss_pred HHH
Confidence 654
No 117
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=126.00 Aligned_cols=383 Identities=10% Similarity=0.015 Sum_probs=231.0
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
....|..+.+| +...+-|...+|.+.+....+++-|+.|+ +|-|.+++++..+..+|..+=.++... .+.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p-~v~------- 135 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLP-FVP------- 135 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCc-ccc-------
Confidence 44567777778 77778899999999999999999999999 799999999999999999999888642 100
Q ss_pred CCCCcCcCCCCCchhHH--HHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVA--ILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
..++ ..+.+..+.+...-......+.+-+-+|++++ |..+..+-.+++.+|.++|..+.
T Consensus 136 -------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 136 -------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred -------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcc
Confidence 1333 77788888888888888887888889999998 99999998888889988887776
Q ss_pred HHhccc------cchhh--HHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 008651 173 VWISTN------QGWDW--SFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEI 244 (558)
Q Consensus 173 ~~l~~~------~gw~~--~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (558)
..+..+ ..|.. .|+.......+.+.+....+++.+..||..+....
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~-------------------------- 250 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL-------------------------- 250 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh--------------------------
Confidence 666543 34554 23322222222223333333332333332211100
Q ss_pred ccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhccc-
Q 008651 245 HDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQ- 323 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 323 (558)
+ +.++..... +...+++.++.++...+....|+.....+.
T Consensus 251 ---------~------~~~f~~si~------------------------~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~ 291 (480)
T KOG2563|consen 251 ---------Q------DASFPKSIK------------------------SCFKNRQFIILAICYGIGLGLFNSLSTLLNL 291 (480)
T ss_pred ---------h------cCcHHHHHH------------------------HHHcCccHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0 000111000 001233333334433444444444433222
Q ss_pred ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008651 324 TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVV 403 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~ 403 (558)
......+.+ ...+.......+..++++.+.+.+.||..+- +..+.+-.....++.++....
T Consensus 292 ~l~~sgY~~---------~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f----------k~~~~v~~~~~~v~~~~l~~~ 352 (480)
T KOG2563|consen 292 ALCPSGYEG---------VFAGYIGALMIVAGMLGALASGIIADKTKKF----------KLTTLVLYLFALVGTLMLLTC 352 (480)
T ss_pred ccccccCCc---------cccchhHHHHHHHHHHHHHHHHhhhhhhhhH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 111111111 1234445555566677777888888765432 122222222233232121111
Q ss_pred HHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 404 ETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVV 483 (558)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~ 483 (558)
. + ..-..+++.....++|..+....|..+++..|..=+...++..|+.++..++-+.+-..+.
T Consensus 353 t---------~--------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~ 415 (480)
T KOG2563|consen 353 T---------L--------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIM 415 (480)
T ss_pred h---------c--------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHH
Confidence 1 0 0123344555667888888888999999999999888899999998887777666666666
Q ss_pred HHhhhccC--CcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhh
Q 008651 484 EIVNKVSG--GWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYKEVEIK 537 (558)
Q Consensus 484 ~~i~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 537 (558)
+...+.-+ +|. + ..-+.++..+++.+++..++++.+++.+.|..
T Consensus 416 ~~~~~~~~~~~~~---------~-~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 416 GILAEDLGPPGNT---------F-PANIFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred HHHhhccCCCCCC---------c-cchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 66543221 111 0 11256777777787888888777766555543
No 118
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.36 E-value=3.9e-12 Score=112.00 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHH
Q 008651 35 LTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILF 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (558)
.+.+.++..++.++.|+++|| +|||+.+..+..+..++.+.+.... +.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 55 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS---------------------------NITVLI 55 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc---------------------------cHHHHH
Confidence 345677888999999999999 7999999999988888888776643 566788
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 008651 115 TGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLF 194 (558)
Q Consensus 115 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~ 194 (558)
+.+++.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|++.....++
T Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 56 IARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 89999999999999999999999999887 999999999999999999999999999989999999987766555
Q ss_pred HHHHHH
Q 008651 195 ATVFVI 200 (558)
Q Consensus 195 ~~~~~~ 200 (558)
..+...
T Consensus 130 ~~~~~~ 135 (141)
T TIGR00880 130 AFILLA 135 (141)
T ss_pred HHHHHh
Confidence 554444
No 119
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.36 E-value=1.4e-11 Score=129.56 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=131.0
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
.++++.+..+++.|+. +.|. .+.++..+.+.++..++.++.|++.|| +||||.+..+.++..++..+.....
T Consensus 229 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~---- 300 (399)
T PRK05122 229 SIGFGTIATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP---- 300 (399)
T ss_pred HHHHHHHHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3455666677788875 4465 355677788888999999999999999 7999999998888888877776642
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+.+.+++.+++.|++.+...+.......|.+|+++ |++++++++...++|.
T Consensus 301 -----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 351 (399)
T PRK05122 301 -----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSL 351 (399)
T ss_pred -----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 44566778899999999888888888888888776 9999999999999999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
.+++.+.|++.+..||+..|++.+...+++.+.....++
T Consensus 352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888776666665554433
No 120
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.36 E-value=3e-11 Score=130.99 Aligned_cols=165 Identities=10% Similarity=0.109 Sum_probs=124.2
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
..+.||+...++|.|+++.+|++..+.++......++..++.+++|+++|| +|||+.+..+.++..++...+.....
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~-- 338 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILIN-- 338 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 346788999999999998999999888888888899999999999999999 79999988887654443333222110
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
..+...+++++++.+++.+...+....++.+.+|++. |++++++.+....++
T Consensus 339 ----------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~ 390 (490)
T PRK10642 339 ----------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLV 390 (490)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHH
Confidence 0135567788888888777777778888899999987 999999866666677
Q ss_pred HHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHH
Q 008651 165 SIIGVTFIVWISTNQ-GWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+.++|.+.+++.+.. +|+.++++..+..+++++..+
T Consensus 391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 788999999887754 467666655444444444433
No 121
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.35 E-value=2e-11 Score=128.45 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=124.9
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
+....++|.|+++++|+++.+.+++.+...++..++.+++|+++|| +|||+.+..+.....+.........
T Consensus 233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~-------- 303 (393)
T PRK15011 233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAH-------- 303 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 3344578889999999999999999888888888899999999999 7999988877655554443333221
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
+.+.+++.+++.+++.|...+.......|.+|++ |+++.++++...++|..+||
T Consensus 304 -------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~~~~~~~~lg~~~g~ 357 (393)
T PRK15011 304 -------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATTLYTNTSRVGWIIAG 357 (393)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHHHHHHHHHHHHHHHH
Confidence 4455667788887777777777778888988853 89999999989999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
.++|.+.+.+||+..|++..+..+++++..+.
T Consensus 358 ~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 358 SLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888777776665543
No 122
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.35 E-value=1.3e-10 Score=118.05 Aligned_cols=80 Identities=10% Similarity=-0.023 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc----------
Q 008651 109 QVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN---------- 178 (558)
Q Consensus 109 ~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~---------- 178 (558)
++..++++.++.|+|.+..++++++++++..|+++ +.+.+++......+|..+||.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 68899999999999999999999999999998886 89999999999999999999999977631
Q ss_pred ------cchhhHHHHHHHHHHH
Q 008651 179 ------QGWDWSFGVCTIAVLF 194 (558)
Q Consensus 179 ------~gw~~~f~i~~~~~~~ 194 (558)
.+|+++|++.+....+
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4789998865554333
No 123
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.33 E-value=2e-11 Score=131.57 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=122.7
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..+++...++|.|+++.+|+|..++++..+.+.++..++.+++|+++|| +|||+.++....+..++..++....
T Consensus 272 ~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~----- 345 (467)
T PRK09556 272 IVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQH----- 345 (467)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHh-----
Confidence 3456677889999999999999999999999999999999999999999 7999987766555444433322221
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH-HH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV-GS 165 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i-g~ 165 (558)
..+.....+.+++.|++..+..........|.+|++. |+++.++.+...++ |.
T Consensus 346 --------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g~l~g~ 399 (467)
T PRK09556 346 --------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFAYLFGD 399 (467)
T ss_pred --------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHhH
Confidence 0134455566777775443333333456679999886 99999999998886 77
Q ss_pred HHHHHHHHHhcc------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008651 166 IIGVTFIVWIST------------NQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 166 ~~g~~~~~~l~~------------~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
+++|.+.|++.+ ..||+..|++..+..+++.+..+.
T Consensus 400 ~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 400 SFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 678999998877776666555443
No 124
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.32 E-value=2.2e-10 Score=116.59 Aligned_cols=340 Identities=12% Similarity=0.038 Sum_probs=191.9
Q ss_pred HHHHHHHhhhhcCC---Cc----hhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHH-HHHHHHHHHHHHhhhcc
Q 008651 13 MVSLVTYFHGYMNF---SL----TKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFG-CIELLGLAILAIQAHAH 84 (558)
Q Consensus 13 ~~~l~~yl~~~~~~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~-~~~~~~~~~~~~~~~~~ 84 (558)
..++|+|+++..+- ++ +-.+...++..+..++..|+-|.++|+ .|+||...... .+-.+...++.+.+
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~--- 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIP--- 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhC---
Confidence 35688999888755 33 335566777788889999999999999 68776655444 44445555555542
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
++.+++..++..++..++..+......+++.|..++++ .++.-+.-+....+|
T Consensus 111 ---------------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylg 163 (438)
T COG2270 111 ---------------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLG 163 (438)
T ss_pred ---------------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCccccccccccccc
Confidence 11367777788888999999999999999999998876 455555555556677
Q ss_pred HHHHHHHH--HHh-c---------------cccchhhHHHHHHHHHHHHHHHHHHhcccccccC-CCCChhHHHHHHHHH
Q 008651 165 SIIGVTFI--VWI-S---------------TNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNV-PKGSPIIRILQVFVA 225 (558)
Q Consensus 165 ~~~g~~~~--~~l-~---------------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 225 (558)
+.+.-+++ ..+ . +...=|..+.++++..++..+-+++..+.....+ |..+....-.+-+..
T Consensus 164 s~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~ 243 (438)
T COG2270 164 SVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKS 243 (438)
T ss_pred chHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHH
Confidence 76654443 111 1 1223355555555543333222222211111000 111111110110111
Q ss_pred HHhhCCCCCCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhh
Q 008651 226 AIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRM 305 (558)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (558)
.+|+. ..++.+.++
T Consensus 244 t~k~i------------------------------------------------------------------~~~~~i~~F 257 (438)
T COG2270 244 TFKEI------------------------------------------------------------------RGRKNLVLF 257 (438)
T ss_pred HHHHH------------------------------------------------------------------hcccchHHH
Confidence 11100 001111111
Q ss_pred HHHHHHHHHHHHHhhccc---ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCCh
Q 008651 306 LPIIVSTLFMNTCLAQLQ---TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQ 382 (558)
Q Consensus 306 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~ 382 (558)
.+...++.-..+... +.+.....+++ ......+.....+..++++.+.+++-+|++.|
T Consensus 258 ---LiA~~~~~DGv~til~~~~~fg~~~~gls------~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k---------- 318 (438)
T COG2270 258 ---LIARFFYIDGVNTILAMGGVFGAADLGLS------STELLLIGIALSVVAALGAIIAGFLDERFGSK---------- 318 (438)
T ss_pred ---HHHHHHHHhhHHHHHHHHHHHHHHHcCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----------
Confidence 111011000000000 00000000000 00011122233455567777788888787776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHH
Q 008651 383 LQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKS 462 (558)
Q Consensus 383 ~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 462 (558)
+.+.+++++..+.++...+.. ......+.-.+.|...+......-+|..+.+|++..+
T Consensus 319 -~vl~~~lvi~~~~~~~~~~~~---------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~ 376 (438)
T COG2270 319 -PVLMIGLVILSIAALYLIFLE---------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG 376 (438)
T ss_pred -eeehHHHHHHHHHHHHHHHcc---------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc
Confidence 446777777666655544432 1122233447788888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 463 LSTAISWCSIAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 463 ~~~gi~~~~~~lg~~lg~~l~~~i~~~~ 490 (558)
...|+++++...++.+|+.+.+.+.+.+
T Consensus 377 ~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 377 RFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred ceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997544
No 125
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.31 E-value=4e-11 Score=124.65 Aligned_cols=155 Identities=11% Similarity=0.056 Sum_probs=126.5
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
.....++.|+++++|.+..+.+++.+.......++.+++|++.|| +|||+++.++.++..+.........
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 286 (375)
T TIGR00899 217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN--------- 286 (375)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH---------
Confidence 344567888888999999999999888888888889999999999 7999999887766555544443332
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
+.+.+++.+++.|++.|...+....+..|..|++ +++++++++...++|..++|.
T Consensus 287 ------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~~ 341 (375)
T TIGR00899 287 ------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAGS 341 (375)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHH
Confidence 4556677788889988888888888899988754 679999999999999999999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
++|++.+..||+..|++.++..+++.+...
T Consensus 342 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 342 VGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988877766666543
No 126
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.31 E-value=3.7e-11 Score=122.94 Aligned_cols=161 Identities=22% Similarity=0.301 Sum_probs=143.1
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchH-HHHHHHHHHHHHHHHHHHhhhc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFK-TCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
....+.....+++.++.+.+|.++.+.++......++..++.++.|++.|| +|||+ .+..+.++..++.+......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-- 263 (352)
T cd06174 187 LSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAP-- 263 (352)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhc--
Confidence 345566667788888888889999999999999999999999999999999 79999 99999999888888887753
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+.+.+.+..++.|++.+...+...+++.|..|+++ |++.+++++...++
T Consensus 264 -------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 312 (352)
T cd06174 264 -------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFGSL 312 (352)
T ss_pred -------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHHHH
Confidence 46678889999999999999999999999999876 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
|..+++.+.+.+.+..+|+..|++.++..+++.+..
T Consensus 313 ~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888777666554
No 127
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.28 E-value=4.2e-11 Score=124.03 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=126.2
Q ss_pred hHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 12 NMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
.....+.|. +++|.++.+.++..+.+.++..++.++.|+++|| +|||+.+.++.++..++.+++.+...
T Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 292 (377)
T TIGR00890 224 LIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPM--------- 292 (377)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHccc---------
Confidence 334455554 6789999999999999999999999999999999 79999999998888888777665421
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
.+...++...++.+++.+...+..+.++.|.+|+++ |++++++++...++|..++|.+
T Consensus 293 ----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~ 350 (377)
T TIGR00890 293 ----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLI 350 (377)
T ss_pred ----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHH
Confidence 122334556777888888888888899999999887 9999999999999999999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHH
Q 008651 172 IVWISTNQGWDWSFGVCTIAVLFAT 196 (558)
Q Consensus 172 ~~~l~~~~gw~~~f~i~~~~~~~~~ 196 (558)
.+++.++.||++.|.+.++..+++.
T Consensus 351 ~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 351 ASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999998777655543
No 128
>PRK03545 putative arabinose transporter; Provisional
Probab=99.28 E-value=1.5e-10 Score=121.52 Aligned_cols=162 Identities=12% Similarity=-0.004 Sum_probs=127.6
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..+++...+++.|+++.+|.|..+++++.+.+.++..++.++.|+++|| +|||+. ..+..+..++........
T Consensus 219 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~-~~~~~~~~~~~~~l~~~~----- 291 (390)
T PRK03545 219 TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFL-LIAIALLLVCLLLLLPAA----- 291 (390)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHH-HHHHHHHHHHHHHHHHHh-----
Confidence 3455556677888888899999999999999999999999999999999 798764 444444444443332221
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
.+.+.+++..++.|++.+...+.....+.+..|+ + |+++++++....++|..
T Consensus 292 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~ 343 (390)
T PRK03545 292 ---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMALFSGIFNIGIG 343 (390)
T ss_pred ---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHHHHHHHHHHHH
Confidence 1455677788888998887777788888887664 4 89999999999999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhc
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGK 203 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 203 (558)
+||.++|++.+++|++..|++.+...+++.+......
T Consensus 344 ~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 344 AGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998888777776655443
No 129
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.28 E-value=7.4e-11 Score=125.19 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=126.9
Q ss_pred hHHHHHHHhhhhcCCCc--------hhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 12 NMVSLVTYFHGYMNFSL--------TKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~--------~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
...+++.|++ +.|.++ ++.+...+...+...++.++.|+++|| +|||++++.+.++..++..+......
T Consensus 227 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~- 303 (418)
T TIGR00889 227 TNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDP- 303 (418)
T ss_pred HHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCc-
Confidence 3345566764 455443 567899999999999999999999999 79999999999988888766665321
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHH-HHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFL-FSLT 162 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~-~~~~ 162 (558)
+..+.+.+++.+++.|++.+...+....++.|.+|+++ |++++++.+ ....
T Consensus 304 ----------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 304 ----------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNG 355 (418)
T ss_pred ----------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHh
Confidence 01134567788999999999989999999999999886 999999997 5678
Q ss_pred HHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHHHHHHh
Q 008651 163 VGSIIGVTFIVWISTN------QGWDWSFGVCTIAVLFATVFVIMG 202 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~------~gw~~~f~i~~~~~~~~~~~~~~~ 202 (558)
+|.++||.++|++.++ +||+.+|.+.++..+++.+++...
T Consensus 356 lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 356 FGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred hHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 469999998877766555544443
No 130
>PRK03699 putative transporter; Provisional
Probab=99.27 E-value=4.9e-11 Score=125.49 Aligned_cols=158 Identities=12% Similarity=0.124 Sum_probs=127.0
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
..+++++..++|.|+++++|+|..+++++.+.+.++..++.+++|+++|| +|||+.+.....+..++..+.....
T Consensus 218 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~---- 292 (394)
T PRK03699 218 ILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTD---- 292 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcC----
Confidence 35567788899999999999999999999999999999999999999999 7999998887766666555444332
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+...+.+..++.|++.+...+...+...+..|++ +++..++.....++|.
T Consensus 293 -----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 293 -----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTIGT 342 (394)
T ss_pred -----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhHHH
Confidence 3334555667788888888888888888877644 5667788888889999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~ 198 (558)
.++|.+.|++.+..||+..|++..+...++.+.
T Consensus 343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 999999999999999999998877665555443
No 131
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.26 E-value=1.4e-10 Score=121.95 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=129.2
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
..++++++..+++.|+++ +|++..+++...+.+.++..++.++.|+++|| +|||+.+..+..+..++.++......
T Consensus 217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~-- 292 (393)
T PRK09705 217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLPL-- 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHccc--
Confidence 446778888999999975 89999999999999999999999999999999 79999999988777777665543220
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
+.... ..++.|++.+...|.......+..++++ .|++.+++.+...+++
T Consensus 293 ------------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~~~~ 341 (393)
T PRK09705 293 ------------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIGFII 341 (393)
T ss_pred ------------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHH
Confidence 11112 2245688888888877777778776432 2899999999999999
Q ss_pred HHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 165 SIIGVTFIVWISTNQG-WDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
..+||.+.|++.+..| |+..|.+.+...++..+......+
T Consensus 342 ~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 342 AGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999876 788888877766665555444443
No 132
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.25 E-value=8.8e-11 Score=131.41 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHH
Q 008651 33 TTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAI 112 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (558)
.......++..++.+++|+++|| +|||++++++.++.+++.+++++.. +...
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~---------------------------s~~~ 650 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN---------------------------SESA 650 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc---------------------------cHHH
Confidence 33445568888999999999999 7999999999999888888877753 3445
Q ss_pred HHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Q 008651 113 LFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAV 192 (558)
Q Consensus 113 ~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~ 192 (558)
+++.+++.+++.++..+...++++|++|.+. |++++++.+...++|+++||.+++.+... +...+|++.++..
T Consensus 651 ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~l 723 (742)
T TIGR01299 651 MIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAAL 723 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 6677778888888888999999999999986 99999999999999999999999988764 4567888777766
Q ss_pred HHHHHHHH
Q 008651 193 LFATVFVI 200 (558)
Q Consensus 193 ~~~~~~~~ 200 (558)
+++.++.+
T Consensus 724 ll~~ll~~ 731 (742)
T TIGR01299 724 ACGGLLAL 731 (742)
T ss_pred HHHHHHHH
Confidence 66555444
No 133
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.23 E-value=2.1e-10 Score=120.89 Aligned_cols=155 Identities=19% Similarity=0.106 Sum_probs=123.4
Q ss_pred HHHHHHHhhhhcCCCch---hhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 13 MVSLVTYFHGYMNFSLT---KSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
...++.|+.+..+.... ..+.+.+.+.++..++.+..|+++|| +|||+.+..+.++..++.+......
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~-------- 309 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQ-------- 309 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhc--------
Confidence 34566676654432221 24555666777888889999999999 7999999998887777666655532
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
+.+.+++.+++.|++.+...+...+++.+..|+++ |++.+++++...++|..+||
T Consensus 310 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 310 -------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred -------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHhhH
Confidence 45677788999999999999999999999888776 99999999999999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
.++|++.++.||++.|++.+.+.+++.+..+.
T Consensus 365 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 365 LMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877766655443
No 134
>PRK12382 putative transporter; Provisional
Probab=99.22 E-value=1.6e-10 Score=121.35 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=128.6
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
+++..+..+.+.|+++ .|.+ +.++....+.++..+++++.|++.|| +||||.+..+..+..++.++..+..
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~----- 300 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP----- 300 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-----
Confidence 4455556667777754 4554 45666777888888999999999999 7999999999888888877766542
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
+.+.+++..++.|++.+...+...+.+.|.+|+++ |++++++++...++|..
T Consensus 301 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ 352 (392)
T PRK12382 301 ----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYG 352 (392)
T ss_pred ----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHH
Confidence 44566778889999999888888888999988776 99999999999999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+||.+.+++.++.||+..|.+.+...+++.++.+
T Consensus 353 ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 353 VSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877666665544
No 135
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.22 E-value=1.6e-10 Score=122.54 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=131.0
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
++...++|.|+++.+|.+..+.+++.+.+.++..++.+++|++.|| .++++.+..+.++..++.++..+..
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-------- 310 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP-------- 310 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc--------
Confidence 4455677889887799999999999999999999999999999999 6888888888877777776665532
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
+.....+..++.|++.+...+...+++.|.+|++. |++++++++...++|..+||
T Consensus 311 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 311 -------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHH
Confidence 45566777888898888887888889999999876 99999999999999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHHHHh
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFVIMG 202 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 202 (558)
.++|++.+.+|++..+++.+...++..++..+.
T Consensus 366 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 366 ALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888887666544444444333
No 136
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.22 E-value=1.4e-12 Score=141.42 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=3.0
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
+.+.+.......-++++|+++.++.|++.+.|-++..+..++..++++| .-|-|-+-.|.+++.+|.+++++ |+.
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~l----Phf 90 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFAL----PHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhc----cHh
Confidence 5666777777788999999999999999999999999999999999999 57778888899999999999987 555
Q ss_pred CCCCCCCCCCC--------CcCcC----------------C---CCCchhHHHHHHHHHHHHHhccccccchhhhhhccC
Q 008651 87 RPKPCVGVAPN--------LVNQC----------------D---DADGTQVAILFTGLYLFACGTGGVKAALPSLGADQF 139 (558)
Q Consensus 87 ~~~~~~~~~~~--------~~~~~----------------~---~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~ 139 (558)
..+.|+..+.+ ....| . ......+..++++.++.|+|.....+...+++-|..
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv 170 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV 170 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence 54544311111 01112 0 111123678899999999999999999999999999
Q ss_pred CCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc---------------------c-chhhHHHHHHHHHHHHHH
Q 008651 140 DERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN---------------------Q-GWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 140 ~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~---------------------~-gw~~~f~i~~~~~~~~~~ 197 (558)
++++ -.-.+|+.+....+|+++|..+++..... . .|+..|++.+...++..+
T Consensus 171 ~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 171 SKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 78999999999999999998888765321 1 377777777766555555
Q ss_pred HHHHhcccc
Q 008651 198 FVIMGKSLY 206 (558)
Q Consensus 198 ~~~~~~~~~ 206 (558)
.+++..+++
T Consensus 245 pl~~FPk~l 253 (539)
T PF03137_consen 245 PLFFFPKKL 253 (539)
T ss_dssp ---------
T ss_pred HHHcCCccC
Confidence 444444433
No 137
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.22 E-value=2.5e-10 Score=120.41 Aligned_cols=159 Identities=15% Similarity=0.039 Sum_probs=125.1
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..+|....++|.|++ +.|++..+.+.+.+.+.++..++.++.|+++|| +|||+.+..+.+...++.++.....
T Consensus 234 ~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~----- 306 (406)
T PRK11551 234 IVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAP----- 306 (406)
T ss_pred HHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 345566667788875 579999999999999999999999999999999 7999998887666666655554432
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
+.+.+.+..++.|++.++..+...++..|.+|+++ |++++++.+....+|..
T Consensus 307 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ 358 (406)
T PRK11551 307 ----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSM 358 (406)
T ss_pred ----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHH
Confidence 34455566677888887888889999999999887 99999999999999999
Q ss_pred HHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTNQ-GWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 167 ~g~~~~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+||.++|++.++. +|...+++.....+++.+..+
T Consensus 359 ~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 359 AGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 456666666555554444433
No 138
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.21 E-value=1.7e-10 Score=122.49 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=124.6
Q ss_pred HHHHHHhhhhc---CCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 14 VSLVTYFHGYM---NFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 14 ~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
..++.|+.+.+ +.+..+.+++.+...++..++.+++|+++|| +|||+.+..+.++..++.++..++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~--------- 313 (420)
T PRK09528 244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT--------- 313 (420)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc---------
Confidence 35667766543 5666788999999999999999999999999 7999999999988888888877653
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNW-FLFSLTVGSIIGV 169 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~g~ 169 (558)
+.+.+++.+++.+++.+...+....++.|.+|++. |+...+. ++...++|.+++|
T Consensus 314 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~ 369 (420)
T PRK09528 314 ------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLS 369 (420)
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHH
Confidence 45677788999999988888888889999998876 7777655 6677899999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
.++|++.+..||+..|.+.++..++..++.
T Consensus 370 ~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 370 TLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776655444433
No 139
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.21 E-value=2.4e-10 Score=123.91 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=116.2
Q ss_pred hHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 12 NMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
...++|.|+++++|++..+++++.+.+.++..++.+++|+++|| +|||+++..+.++..++.++.....
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------- 362 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------- 362 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc----------
Confidence 45678999988999999999999999999999999999999999 7999998888766665554433321
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
..+.+.+.+..++.++...+..+..++++.|.+|+++ |++++++++...++|..+||.+
T Consensus 363 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l 421 (496)
T PRK03893 363 ---------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPIL 421 (496)
T ss_pred ---------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHH
Confidence 1133334444444443334455677888999999876 9999999999999999999999
Q ss_pred HHHhccccchhhHHHHHHHH
Q 008651 172 IVWISTNQGWDWSFGVCTIA 191 (558)
Q Consensus 172 ~~~l~~~~gw~~~f~i~~~~ 191 (558)
+|.+.+++||+..+.+....
T Consensus 422 ~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 422 GALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHhccCChHHHHHHHHHH
Confidence 99999999999887654443
No 140
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.21 E-value=1.3e-10 Score=121.14 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=122.9
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHH-HHHHHhhhc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGL-AILAIQAHA 83 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~-~~~~~~~~~ 83 (558)
....++....+++.|+++++|.+..+.++....+.++..++.+++|+++|| +|||+.+..+..+..+.. ........
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~- 308 (394)
T TIGR00883 231 TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLD- 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 445667777889999988999999999999999999999999999999999 799998876655444333 22211110
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHH-HHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWF-LFSLT 162 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~-~~~~~ 162 (558)
..+.+.+....++.+++.+...+...+++.|.+|+++ |++++++. .....
T Consensus 309 -----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~ 359 (394)
T TIGR00883 309 -----------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGA 359 (394)
T ss_pred -----------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHH
Confidence 0144566677788888888899999999999999887 89999984 45567
Q ss_pred HHHHHHHHHHHHhccccc-hhhHHHHHHHHH
Q 008651 163 VGSIIGVTFIVWISTNQG-WDWSFGVCTIAV 192 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~g-w~~~f~i~~~~~ 192 (558)
+|..++|.++|++.++.| |+..++..+...
T Consensus 360 ~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 360 IFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 899999999999999888 887776655443
No 141
>PRK09952 shikimate transporter; Provisional
Probab=99.20 E-value=4.4e-10 Score=120.03 Aligned_cols=168 Identities=12% Similarity=0.006 Sum_probs=124.1
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
..+++|....+++.|+++.+|++......+.........++.++.|+++|| +||||.+..+.++..++.+.+......
T Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~- 339 (438)
T PRK09952 262 ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEA- 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 456788888899999999999988876666666677778889999999999 799999988876655544433332100
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH-HHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS-LTV 163 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~-~~i 163 (558)
......+++..++.+++.+...+..+++++|.+|.+. |+.+.++.+.. ..+
T Consensus 340 ----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~l 391 (438)
T PRK09952 340 ----------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVV 391 (438)
T ss_pred ----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHH
Confidence 0123344455666788888888889999999999976 88888885544 458
Q ss_pred HHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHHHHHHh
Q 008651 164 GSIIGVTFIVWISTNQ--GWDWSFGVCTIAVLFATVFVIMG 202 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~ 202 (558)
|+.++|.+.+++.+.. +|+..+...++..+++.+..+..
T Consensus 392 gg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 392 GGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999997743 48888877766666665555443
No 142
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.20 E-value=3.4e-10 Score=118.50 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=121.5
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
.....++|.|++ +.|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+..+..++.+... .
T Consensus 217 ~~~~~~lp~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~--------- 284 (381)
T PRK03633 217 GSLYGLMPLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S--------- 284 (381)
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h---------
Confidence 344566788886 469999999999999999999999999999999 7999999888877776655432 1
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
. .......++.|++.+...|...+.+.|..|+++ ++...+.+....++|.++||
T Consensus 285 -------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 285 -------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred -------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 1 123345667787777788999999999888765 67777888888999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
.++|++.++.+|++.|.+.+...+++.+..
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877766555443
No 143
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.19 E-value=4.7e-10 Score=117.56 Aligned_cols=158 Identities=12% Similarity=0.010 Sum_probs=134.6
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
..+++....+.+.|++ ++|.+..+.|.+.+...++..+..++.|++.|| +|+|+.+.++.++..+..+..+++.
T Consensus 218 ~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~---- 291 (382)
T TIGR00902 218 QGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIE---- 291 (382)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHh----
Confidence 4566677788899995 599999999999999999999999999999999 7999999999999999988887753
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHH-HHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFL-FSLTVG 164 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig 164 (558)
+.+.+++...++|+..|...+....++.+. |+++ |+++.++++ ....+|
T Consensus 292 -----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g 341 (382)
T TIGR00902 292 -----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGL 341 (382)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999987 7765 889999976 466899
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 165 SIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
..+|+.++|++.++.|+ ..|++.+...+++.++..
T Consensus 342 ~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 342 IAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 567766666555554433
No 144
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.19 E-value=1.5e-08 Score=107.71 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=115.5
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc--cC-chHH-HHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY--LS-RFKT-CVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G-rr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
.....|+++++|+++++.....+...+-- ..-++.|.++|.+ +| |||- ++++.++..++...++..+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 34456889999999999887665554433 3467789999984 23 4444 55555555555555554321
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
...+.....+..++..+|.+.....+-+++.|...++.. .|+...+..+....+|++++.
T Consensus 82 ----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~ 141 (433)
T PF03092_consen 82 ----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGS 141 (433)
T ss_pred ----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHH
Confidence 012444556677788899999999999999999865542 278899999999999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHHHHh
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFVIMG 202 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 202 (558)
.++|.+.+..+++..|.+..++..+..+..+..
T Consensus 142 ~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 142 LLSGPLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 999999999999999998877655554444333
No 145
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.18 E-value=3.7e-09 Score=112.16 Aligned_cols=353 Identities=14% Similarity=0.063 Sum_probs=204.7
Q ss_pred chhhhhhhhH---HHHHHHhhhhcCCCchh-hhHHHHHH----HHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 008651 4 LESMSFVANM---VSLVTYFHGYMNFSLTK-SATTLTNF----TGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLA 75 (558)
Q Consensus 4 ~~~~~~y~~~---~~l~~yl~~~~~~s~~~-~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~ 75 (558)
++.++++... .....+....++.+..+ .+...... .+...+.++.-|.++|| +|||..+.+..+...+...
T Consensus 29 l~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~ 107 (463)
T KOG2816|consen 29 LYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPAL 107 (463)
T ss_pred HHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHH
Confidence 3344444443 33444444455443333 33333333 46778888999999999 6999999999999888888
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHH--hccccccchhhhhhccCCCCChhhhhhhhhh
Q 008651 76 ILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFAC--GTGGVKAALPSLGADQFDERDPKEAAKFSSF 153 (558)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~ 153 (558)
+..+.. +|.++ +.++ +.+.......++++|....++ |...
T Consensus 108 ~~~~~~----------------------------~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~ 149 (463)
T KOG2816|consen 108 CLLFQG----------------------------YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE------RSSS 149 (463)
T ss_pred HHHHHH----------------------------HHHhh----hcccccchhhhhhhhhhheeeccchhH------HHHH
Confidence 888752 22222 4333 344556778888999988886 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCC
Q 008651 154 FNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLP 233 (558)
Q Consensus 154 ~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (558)
+++.......+..++|.+++.+.+..|.-..|.++.+..++..+......|+-..++ +.+.
T Consensus 150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~-~~~~------------------ 210 (463)
T KOG2816|consen 150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK-ERSD------------------ 210 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc-cccc------------------
Confidence 999999899999999999999999999999999999888877776665544422211 1100
Q ss_pred CCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHH
Q 008651 234 KPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTL 313 (558)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (558)
.+....+... ..+.... |..... . +....|..+.+. .....
T Consensus 211 ~~~~~~~~~~------------~~~~~~~---~~~~~~--------------------~--~~~~~r~~l~l~--l~~~~ 251 (463)
T KOG2816|consen 211 ATLRELTPGS------------LDSSHVA---DAFQSL--------------------T--KVGPDRLLLLLL--LVAFL 251 (463)
T ss_pred ccccccCCCc------------ccchhhh---hhhhhh--------------------c--ccCCCccchHHH--HHHHH
Confidence 0000000000 0000000 000000 0 001111111111 11111
Q ss_pred HHHHHhhccc-ceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhh-hhhhhhhhhhcCCCCCCChhHHHHHHHH
Q 008651 314 FMNTCLAQLQ-TFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYD-RVFIPIARKITGIPTGIRQLQRIGVGLV 391 (558)
Q Consensus 314 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~l~~~~~~r~~~~~~~~~~~~~~~~g~~ 391 (558)
...-...+.. ..+.+.-..+..+ ...-+.+.........+...+.. .+...++.| +.+..|+.
T Consensus 252 ~~~~~~~~~~~~~~~yl~~~f~w~----~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----------~~i~lGl~ 316 (463)
T KOG2816|consen 252 SSLPEAGGASDVLLLYLKAKFGWN----KKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----------RLISLGLL 316 (463)
T ss_pred HHHHHhcCceeEEEEEEeeecCcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hHhhHHHH
Confidence 1111111111 1111111111211 11112222222333333333222 334444444 46888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHH
Q 008651 392 LSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCS 471 (558)
Q Consensus 392 l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~ 471 (558)
...+..+++++.+ ..|. ...............|...+++...++++.+|++.++....
T Consensus 317 ~~~~~~~~~af~~---------------------~~w~-~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 317 SEFLQLLLFAFAT---------------------ETWM-MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred HHHHHHHHHHHhc---------------------cchh-hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 9999999998863 3333 33344555566677888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 008651 472 IAFGYFLSSLVVEIVNKVS 490 (558)
Q Consensus 472 ~~lg~~lg~~l~~~i~~~~ 490 (558)
..+.+.+++.+.+.+...+
T Consensus 375 ~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 375 EGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHhhhhhHHHHHHHHHHH
Confidence 9999999999988775544
No 146
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.16 E-value=1e-09 Score=115.77 Aligned_cols=164 Identities=12% Similarity=0.041 Sum_probs=122.0
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHH-HHHHHHHHHHHHHHHhhhc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCV-LFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~~~~~~~~~~~~~~ 83 (558)
...++++...++|.|++ ++|++..+.+++.+.+.++..++.++.|+++|| +|||+.+. .+.+...++.+.+......
T Consensus 234 ~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 311 (402)
T TIGR00897 234 NTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQH 311 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44567888888998884 689999999999999999999999999999999 79988764 3333333333333222100
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
...+.+..++..++.|++.+...+ ......|..|+ + |++++++.+...++
T Consensus 312 ----------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~------~g~~~g~~~~~~~l 361 (402)
T TIGR00897 312 ----------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-H------KGAAMSVLNLSAGL 361 (402)
T ss_pred ----------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-h------hHHHHHHHHHHHHH
Confidence 001345566777888888777655 34566676543 4 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
|..++|.+++++.+.+||...|++.++..+++.++..
T Consensus 362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877666555443
No 147
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.16 E-value=4.1e-10 Score=120.78 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=114.0
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc--CchHHHH-HHHHHHHHHHHHHHHhhh
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL--SRFKTCV-LFGCIELLGLAILAIQAH 82 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~l~-~~~~~~~~~~~~~~~~~~ 82 (558)
...+|+...++|.|++++.|++..++++....+.++..++.+++|+++|| + |||+... ....+..++.+...+..
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~- 343 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNP- 343 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhc-
Confidence 34567778899999998899999999999999999999999999999999 6 4554332 22233333333332211
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
..+.....+..++.|.+..........+..|.+|+++ |++++++.+...+
T Consensus 344 ------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 393 (452)
T PRK11273 344 ------------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGY 393 (452)
T ss_pred ------------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHHHHH
Confidence 0122333344445554433322333456678999886 9999999998888
Q ss_pred HHHHH-HHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 163 VGSII-GVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 163 ig~~~-g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+|+.+ ||.+.|++.+..||+..|++.....+++++...
T Consensus 394 ~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 394 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88654 799999999999999999988776665554443
No 148
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.15 E-value=6.1e-10 Score=115.74 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=118.7
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHH-HHHHHHHHHHHHHHHHHhhhcc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKT-CVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
...++....+++.|+++.+|.+..+.+++.+...++..++.+++|+++|| +|||+. +........++.+.........
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 34566677788999999999999999999999999999999999999999 799862 1111111112211111110000
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
.. ............+.+.+.+ ..+...+++.|.+|+++ |++++++.+...++|
T Consensus 307 ~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g 359 (399)
T TIGR00893 307 NY--------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINSLGNLG 359 (399)
T ss_pred cc--------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHHHHHHh
Confidence 00 0122233333333334444 78999999999999887 999999999999999
Q ss_pred HHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHH
Q 008651 165 SIIGVTFIVWISTNQG-WDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~ 200 (558)
..++|.+.+++.+..| |+..|++.++..+++.+..+
T Consensus 360 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 99999888777666555443
No 149
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.7e-09 Score=111.05 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=138.2
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
-.++|..++++.+++++..|+|.+..+++...|.++..++.+++|+++|| +.|+++.....+..+..+.+.+...
T Consensus 224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~--- 298 (394)
T COG2814 224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGA--- 298 (394)
T ss_pred HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcc---
Confidence 35678888999999999999999999999999999999999999999999 8999999888888888877777642
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+.+...+..++.|+..+........-+++..|++ ++.+.+++....|+|.
T Consensus 299 -----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~sl~~aa~nlgi 348 (394)
T COG2814 299 -----------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGSLNVAAFNLGI 348 (394)
T ss_pred -----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHHHHHHHHHHHH
Confidence 4456666666677777766666666666644444 7999999999999999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
.+|..++|.+.+++|+....++.++..+++..+.+...+
T Consensus 349 a~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 349 ALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988888777665443
No 150
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.14 E-value=4.5e-10 Score=117.76 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=116.1
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
+...+++.|+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..+.........
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 325 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIG--------- 325 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhC---------
Confidence 334567888988999999999999999999999999999999999 7999999888765433222221111
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
.+.+.+.+..++.++..++..+..++++.|.+|+++ |++++++.+...++|..++|.
T Consensus 326 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~g~~ 382 (405)
T TIGR00891 326 -----------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGALAPI 382 (405)
T ss_pred -----------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHHHHH
Confidence 134455666677777777777888899999999887 999999999999999999999
Q ss_pred HHHHhccccc-hhhHHHH
Q 008651 171 FIVWISTNQG-WDWSFGV 187 (558)
Q Consensus 171 ~~~~l~~~~g-w~~~f~i 187 (558)
+.|++.++.| |+..|..
T Consensus 383 ~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 383 IGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHhccccchhHHh
Confidence 9999999988 8776654
No 151
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.14 E-value=4.9e-10 Score=120.28 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=124.3
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc-cCchHHHHHHHHHH--HHHHHHHHHhhhc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY-LSRFKTCVLFGCIE--LLGLAILAIQAHA 83 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~l~~~~~~~--~~~~~~~~~~~~~ 83 (558)
++++....+++.|++ ++|++..+++++.+.+.++..++.+++|+++||. +++|+...++..+. .++.+++....
T Consensus 255 ~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-- 331 (455)
T TIGR00892 255 LGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG-- 331 (455)
T ss_pred HHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 445556677888885 5899999999999999999999999999999973 23444444433232 33333333322
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
+.+.+++.+++.|++.+...+...+++.|.+|+++ +++.+++++...++
T Consensus 332 -------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~l 380 (455)
T TIGR00892 332 -------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECC 380 (455)
T ss_pred -------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHH
Confidence 56677888999999999999999999999999876 99999999999999
Q ss_pred HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHH
Q 008651 164 GSIIGVTFIVWISTNQ-GWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~-gw~~~f~i~~~~~~~~~~~ 198 (558)
|.++||.++|++.+.. +|++.|++.++..+++.+.
T Consensus 381 g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 381 AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999999887 5999999988776655443
No 152
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.13 E-value=8.3e-10 Score=117.76 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=111.0
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc--CchHHH-HHHHHHHHHHHHHHHHhhhc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL--SRFKTC-VLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~l-~~~~~~~~~~~~~~~~~~~~ 83 (558)
..++++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| + ++|+.. ....+...+..........
T Consensus 257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~- 334 (434)
T PRK11663 257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGILLSVGSLWLMPF- 334 (434)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHHHHHHHHHHccc-
Confidence 3455666788999988899999999999999999999999999999999 5 233332 2222122222211111110
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
.+.....+..++.|++............+|.+|+++ |+++.++.+...++
T Consensus 335 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~ 384 (434)
T PRK11663 335 ------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFAYL 384 (434)
T ss_pred ------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHHHH
Confidence 022223333334444333222333456788888776 99999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
|.+++|.+.|++.+..||+..|++.+++.+++.+...
T Consensus 385 g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 385 GAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988777665554443
No 153
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4.7e-10 Score=114.01 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=126.4
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc-CchHHHHHHH-HHHHHHHHHHHHhhhccccC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL-SRFKTCVLFG-CIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (558)
|++..+.|.|+.+..|+|..++++..+.|-.+...++++.||++||++ |||...-+.. ++..++.+..-.++
T Consensus 269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~------ 342 (448)
T COG2271 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP------ 342 (448)
T ss_pred HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC------
Confidence 677789999999999999999999999999999999999999999988 7776654433 33333333333321
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH-HHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV-GSI 166 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i-g~~ 166 (558)
+.+..+..+..+.+|+-.-+.+-.+-....|..|++. -|.+.|+...+.-+ |+.
T Consensus 343 -------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~ 397 (448)
T COG2271 343 -------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAA 397 (448)
T ss_pred -------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHH
Confidence 1256777888888888877777677777788888876 79999998888888 888
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
.+....+++.|.+||...|.+-.+..+++.+++.
T Consensus 398 ~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 398 LAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred hcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 8888899999999999999887766655555443
No 154
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.10 E-value=2.1e-09 Score=116.43 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=125.2
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHH-HHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLT-NFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
++.+......++|+.+++|++..+.++... ...++..++.+++|+++|| +||||.+.++.++..++.+........
T Consensus 236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~-- 312 (491)
T PRK11010 236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSIT-- 312 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 344445567788888889999999999885 5567999999999999999 799998887766655544333221100
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+.+...+.+..++..++.|...++..++..+..+++. +++.+++.+...++|.
T Consensus 313 ---------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~ 365 (491)
T PRK11010 313 ---------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGR 365 (491)
T ss_pred ---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHH
Confidence 0133334445556555555556777888899998887 7889999999999999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
.+++.+.|++.+..||+..|.+..+..+.+.+.....++
T Consensus 366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 989899999999999999999888887777666655443
No 155
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.09 E-value=1.5e-09 Score=116.01 Aligned_cols=162 Identities=10% Similarity=-0.008 Sum_probs=117.6
Q ss_pred HHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 008651 17 VTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAP 96 (558)
Q Consensus 17 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (558)
.+++.+++|++..+.++....+.++..++.+++|+++|| +|||+.+.++.++..++.+++.+......
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 374 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV----------- 374 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc-----------
Confidence 344556789999889999999999999999999999999 79999999998888887777764221000
Q ss_pred CCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008651 97 NLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 176 (558)
.......+...+....+..+....+..+....++.|.+|+++ |++++++.+...++|.+++|.+.+++.
T Consensus 375 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 375 -----TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred -----CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000022222222222222223344677778899999886 999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 008651 177 TNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 177 ~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
++.+|++.|++.+...+++.++.++
T Consensus 444 ~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 444 ESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HhcCccceehhHHHHHHHHHHHHhe
Confidence 9899999998877776666555444
No 156
>PRK15075 citrate-proton symporter; Provisional
Probab=99.09 E-value=2.2e-09 Score=114.46 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=107.9
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHH-HHHHhhhcc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLA-ILAIQAHAH 84 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~-~~~~~~~~~ 84 (558)
...++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++|| +||||.++.+.++..+... .......
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~-- 327 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVA-- 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 45677788889999998899999999999888999999999999999999 7999998876554332221 1111110
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH-H
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT-V 163 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~-i 163 (558)
..+.....+..++.+++.+...+....++.|.+|++. |+.++++.+...+ +
T Consensus 328 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 328 ----------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAI 379 (434)
T ss_pred ----------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHH
Confidence 0122233344555566667777777789999999987 9999998655444 4
Q ss_pred HHHHHHHHHHHhccccchh
Q 008651 164 GSIIGVTFIVWISTNQGWD 182 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~ 182 (558)
++.++|.+.+++.++.|++
T Consensus 380 ~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 380 FGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HhhhHHHHHHHHHHhcCCc
Confidence 5778999999999988864
No 157
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=3.3e-09 Score=115.79 Aligned_cols=187 Identities=15% Similarity=0.174 Sum_probs=144.1
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
.+.+.+......+.+.|+++.++.|++.+.|-++..+...+..+.+-| .-|-|.+-+|.+++++|.+++++ |+..
T Consensus 111 l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~al----PHf~ 185 (735)
T KOG3626|consen 111 LYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFAL----PHFF 185 (735)
T ss_pred hhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhC----hHHh
Confidence 344666777888999999999999999999999999999999999999 57888899999999999999987 4333
Q ss_pred CCCCCCCCCC-------C------------------cCcCC---CCCch-hHHHHHHHHHHHHHhccccccchhhhhhcc
Q 008651 88 PKPCVGVAPN-------L------------------VNQCD---DADGT-QVAILFTGLYLFACGTGGVKAALPSLGADQ 138 (558)
Q Consensus 88 ~~~~~~~~~~-------~------------------~~~~~---~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~ 138 (558)
..++.+.... . .+.+. +.... -+.+++++.++.|+|....++...+++-|.
T Consensus 186 ~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDn 265 (735)
T KOG3626|consen 186 SGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDN 265 (735)
T ss_pred cCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccc
Confidence 3333211100 0 00111 11222 355788999999999999999999999999
Q ss_pred CCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc------------------c-chhhHHHHHHHHHHHHHHHH
Q 008651 139 FDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN------------------Q-GWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 139 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~------------------~-gw~~~f~i~~~~~~~~~~~~ 199 (558)
..+++ -...+++.+....+|+++|..++++.... . .|+..|++++.+.++..+.+
T Consensus 266 vk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~ 339 (735)
T KOG3626|consen 266 VKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL 339 (735)
T ss_pred ccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 98886 78999999999999999999999887421 1 38888888888777766666
Q ss_pred HHhccc
Q 008651 200 IMGKSL 205 (558)
Q Consensus 200 ~~~~~~ 205 (558)
++..+.
T Consensus 340 f~fPk~ 345 (735)
T KOG3626|consen 340 FFFPKE 345 (735)
T ss_pred HhCccc
Confidence 654433
No 158
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.06 E-value=4.4e-09 Score=112.70 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=137.8
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCch--HHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRF--KTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
-+.-++......|.++++|++..+...+...-++...+++++.|++.|| +|.| +++..+++++.+-.+...+.-. +
T Consensus 295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~-~ 372 (477)
T PF11700_consen 295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFW-P 372 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhh-h
Confidence 4566677788899999999999999999999999999999999999999 7999 8888888776443333322100 0
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
.. ....+.+.+++.-++.|+..|+.++..-++.+++.|+++ .+..||+|.......
T Consensus 373 ~~------------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~s 428 (477)
T PF11700_consen 373 SF------------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKAS 428 (477)
T ss_pred cc------------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHH
Confidence 00 011256678888889999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHH
Q 008651 165 SIIGVTFIVWISTNQG-WDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~ 201 (558)
+.+||.+.+.+.+..| -|..+....++.+++++++..
T Consensus 429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999988876 788888777777777776644
No 159
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.04 E-value=2.1e-09 Score=109.40 Aligned_cols=167 Identities=14% Similarity=0.055 Sum_probs=131.5
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
+|.+....++.|++.+++.++.++|.....+.+...+..+.||+|+|| +|.+|++......++++........+.-
T Consensus 233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~~~~l~~~~~~~--- 308 (417)
T COG2223 233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALAAALLSLFLTGF--- 308 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHHHHHHHcccccc---
Confidence 355677889999999999999999999999999999999999999999 7999999999988888888877753100
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
....+...++...+..++..|.-+.++..++...+|++ -+...++.....++|+..
T Consensus 309 -----------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 309 -----------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred -----------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHHhccccccc
Confidence 00123444444455555555666667777888888775 689999999999999988
Q ss_pred HHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHHh
Q 008651 168 GVTFIVWISTNQG-WDWSFGVCTIAVLFATVFVIMG 202 (558)
Q Consensus 168 g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~ 202 (558)
-|...+...+..| ++..|++...+.+++.+.....
T Consensus 365 lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 365 LPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777 8999998888877777655543
No 160
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.04 E-value=6.1e-09 Score=111.05 Aligned_cols=165 Identities=12% Similarity=-0.007 Sum_probs=108.5
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH-hhhcc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAI-QAHAH 84 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (558)
...+|+...++|.|+++.+|++..+.+...+...++..++.++.|+++|| +|||+.+.++.++..+....... ...
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~-- 332 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN-- 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 46688888999999999999999999998888888888999999999999 79999887766544333222211 110
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH-
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV- 163 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i- 163 (558)
..+....+....+..++.+...+....+.+|.+|++. |+.++++.+...++
T Consensus 333 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 333 ----------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANAL 384 (432)
T ss_pred ----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHH
Confidence 0011111111222223333344556788999999987 99999998876554
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
++...|.+.+.+.....|...+++.+...+++.+..++
T Consensus 385 ~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 385 FGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34457777786644323555666555555555444433
No 161
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.03 E-value=6.9e-09 Score=108.71 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=110.9
Q ss_pred hhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 9 FVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 9 ~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
++....++++|+++.+|++..+.++..+.+.++..++.++.|++.|| +|+|+.+..+..+..++.++......
T Consensus 215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~~------ 287 (382)
T PRK10091 215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFGG------ 287 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHHh------
Confidence 34445566788888899999999999999999999999999999999 79999999988888777765544221
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG 168 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 168 (558)
+.+...+..++.++|.+...+.......+..++++ .++.+ ..+...++|..+|
T Consensus 288 --------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~g~~~G 340 (382)
T PRK10091 288 --------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE-----LLGAA--GGQIAFNLGSAIG 340 (382)
T ss_pred --------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch-----HHHHH--HHHHHHHHHHHHH
Confidence 23344555555666655444444433333333221 13433 3356678999999
Q ss_pred HHHHHHhccc-cchhhHHHHHHHHHHHHHHHH
Q 008651 169 VTFIVWISTN-QGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 169 ~~~~~~l~~~-~gw~~~f~i~~~~~~~~~~~~ 199 (558)
|.++|++.+. .+|++.+.+.+....+.....
T Consensus 341 p~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 341 AYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 9999999885 689999998876655444433
No 162
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.00 E-value=3.3e-09 Score=113.26 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=110.8
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHH---HHHHHHhhhc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLG---LAILAIQAHA 83 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~---~~~~~~~~~~ 83 (558)
..+|+...++|.|+++..|++..++++....+.+...++.+++|+++|| +|+++....+..+..+. ..+.....
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 341 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVTIAVIVYWMNP-- 341 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHhcC--
Confidence 4457788889999998899999999999999999999999999999999 66544323333222221 11111110
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i 163 (558)
..+.+...+..++.|++..+..........|.+|+++ |+++.++.+...++
T Consensus 342 -----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~ 392 (438)
T TIGR00712 342 -----------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYL 392 (438)
T ss_pred -----------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHHh
Confidence 0022233333444454433322233346778888876 99999999888888
Q ss_pred HH-HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 164 GS-IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 164 g~-~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
|+ ++||.+.|++.++.||+..|++.....+++.+..+.
T Consensus 393 gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 393 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred hhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 74 689999999999999999998776665555444433
No 163
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.98 E-value=1e-07 Score=95.97 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=108.4
Q ss_pred hhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcC
Q 008651 21 HGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVN 100 (558)
Q Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (558)
.++.|++..|++.+.......+.+..++.|.++|| +||||..+...++..++.+.--..
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~~-------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHSS-------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 35789999999999999999999999999999999 799999999988888877654332
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhh-ccCCCCChhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhccc
Q 008651 101 QCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGA-DQFDERDPKEAAKFSSFFNWFL-FSLTVGSIIGVTFIVWISTN 178 (558)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~-~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~g~~~~~~l~~~ 178 (558)
++..++++|++-|+++.....+.-+... |.-..+.|++ ..+.-++... ..+.+-++.+..++.++.+.
T Consensus 120 --------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 120 --------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 6789999999999999999888877554 4322222222 1344444333 22333344445566677766
Q ss_pred cch--hhHHHHHHHHHHHHHHHHH
Q 008651 179 QGW--DWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 179 ~gw--~~~f~i~~~~~~~~~~~~~ 200 (558)
.+. .++|..+.+...++.+++.
T Consensus 190 ~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 190 FGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHH
Confidence 654 7899988887776666544
No 164
>PRK10504 putative transporter; Provisional
Probab=98.98 E-value=8.8e-09 Score=110.99 Aligned_cols=144 Identities=11% Similarity=-0.045 Sum_probs=115.8
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
+++.......+.|++..+|.+..+.++....+.++..++.++.|+++|| +|||+++..+..+..++..++.+...
T Consensus 275 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~---- 349 (471)
T PRK10504 275 IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVSLLFMLVAL---- 349 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHhccc----
Confidence 3443444566778877899999999999999999999999999999999 79999999998888777666655321
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
..+.+.+.+..++.|++.+...+..+.+..+.+|+++ ++.++++.+...++|..
T Consensus 350 --------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ 403 (471)
T PRK10504 350 --------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIMQLSMS 403 (471)
T ss_pred --------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHHHHHHH
Confidence 1133344556677888888888889999999999886 99999999999999999
Q ss_pred HHHHHHHHhccccch
Q 008651 167 IGVTFIVWISTNQGW 181 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw 181 (558)
+|+.+++.+.+..|+
T Consensus 404 ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 404 IGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988666555
No 165
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.98 E-value=4.2e-09 Score=108.56 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=118.9
Q ss_pred hhhhhhH-HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 7 MSFVANM-VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 7 ~~~y~~~-~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
+.+++.. ...|.|.++.+|.+..+.+++...+.++..++.++.|++.|| +|||+.+..+..+..++.....+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 298 (365)
T TIGR00900 224 LVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLTP---- 298 (365)
T ss_pred HHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhc----
Confidence 3444444 566777776799999999999999999999999999999999 7999999888777777666665542
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+ +.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++++...++|.
T Consensus 299 ---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~ 350 (365)
T TIGR00900 299 ---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLSHAAW 350 (365)
T ss_pred ---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 1 25677888899999999999999999999999876 9999999999999999
Q ss_pred HHHHHHHHHhccccc
Q 008651 166 IIGVTFIVWISTNQG 180 (558)
Q Consensus 166 ~~g~~~~~~l~~~~g 180 (558)
.++|.++|++.+++|
T Consensus 351 ~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 351 PLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999987654
No 166
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.97 E-value=2.4e-08 Score=105.43 Aligned_cols=154 Identities=14% Similarity=-0.046 Sum_probs=120.0
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
+......|.|+.+++|.++.+.++......++..++.++.|+++|| +|+|+.+.++.++..++.++.......+
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~~~----- 305 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATVIS----- 305 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 3444556788888899999999998888888899999999999999 7999999999888888888777653110
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
+.+.+.+.++.++.|+|.+...+..........| ++ |++..+.+++...+|..+|+
T Consensus 306 -----------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~~~~g~ 361 (406)
T PRK15402 306 -----------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTVSAAMGMLSMLIFTVGI 361 (406)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHHHHHHHHHHHHHHHHHH
Confidence 1145556778888999998887777666554433 44 89999999999999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVL 193 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~ 193 (558)
.+++++.+..++....+...+..+
T Consensus 362 ~~~~~l~~~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 362 ELSKHAYLGGGNGLFNLFNLANGL 385 (406)
T ss_pred HHHHhcccCCchHHHHHHHHHHHH
Confidence 999999888887665555444433
No 167
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.97 E-value=4.6e-09 Score=111.28 Aligned_cols=153 Identities=12% Similarity=0.002 Sum_probs=106.4
Q ss_pred hhhhhhhhHHHHHHHhhh-hcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHH-HHHHHHHHHHHHHHHHhhh
Q 008651 5 ESMSFVANMVSLVTYFHG-YMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTC-VLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l-~~~~~~~~~~~~~~~~~~~ 82 (558)
....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++|| ++||+.. ....++..++. +.....
T Consensus 254 ~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~~-~~~~~~- 330 (412)
T TIGR02332 254 LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAGW-LLASAT- 330 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHHH-HHHHhc-
Confidence 345678888999999976 357888999999999999999999999999999 7977753 33333333332 222211
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
+ +....+.+..+.++|.....+.......|.+|+++ |+.++++.+...+
T Consensus 331 -~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~~ 379 (412)
T TIGR02332 331 -D------------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATGN 379 (412)
T ss_pred -C------------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhhh
Confidence 0 11111222223333333333334445566777776 9999999999999
Q ss_pred HHHHHHHHHHHHhccccc-hhhHHHHHHHH
Q 008651 163 VGSIIGVTFIVWISTNQG-WDWSFGVCTIA 191 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~g-w~~~f~i~~~~ 191 (558)
+|.+++|.+.+.+.+..| |+..|++.+++
T Consensus 380 ~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 380 IGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999998875 99998876654
No 168
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.97 E-value=1.4e-08 Score=107.88 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=106.2
Q ss_pred hHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 12 NMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
+..+++.|+++ .|.+..+.+...+.+.++..++.++.|+++|| +|||+.+..+.++..++.+.......
T Consensus 250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 318 (426)
T PRK12307 250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ--------- 318 (426)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 45677888865 69999999999999999999999999999999 79999998888776655544433210
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
.....+....+..+++..+..+..+.++.|.+|++. |++++++.+...++|..+||.+
T Consensus 319 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 319 ----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred ----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHH
Confidence 012122222222333333444567788899999886 9999999999999999999999
Q ss_pred HHHhccccchhhHHHH
Q 008651 172 IVWISTNQGWDWSFGV 187 (558)
Q Consensus 172 ~~~l~~~~gw~~~f~i 187 (558)
.+++.+..|+....++
T Consensus 377 ~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 377 ATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHcccHHHHHHH
Confidence 9999998887654443
No 169
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.96 E-value=1.7e-08 Score=105.77 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=122.0
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
..+.+....++.|++ +.|.+..+.|...+...++..+..++.|++.|| +|+|+.+..+.++..++.++...+.
T Consensus 219 ~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~----- 291 (382)
T PRK11128 219 GSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTT----- 291 (382)
T ss_pred HHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 344456677788885 589999999999998889999999999999999 7999999999988888877766543
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHH-HHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFL-FSLTVGS 165 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~ 165 (558)
+.+.+++..++.|++.+...+....++.+. ++++ +++.++.+. ....+|.
T Consensus 292 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~ 342 (382)
T PRK11128 292 ----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSI 342 (382)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHH
Confidence 566778889999999998888888888776 4333 678888875 5567888
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~ 197 (558)
.+||.++|.+.+.+|+. .|++.++..+++++
T Consensus 343 ~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 343 AIMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 99999999999998874 56655555444443
No 170
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.95 E-value=2e-08 Score=108.25 Aligned_cols=153 Identities=7% Similarity=-0.012 Sum_probs=112.0
Q ss_pred HHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 008651 18 TYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN 97 (558)
Q Consensus 18 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (558)
+++.+++|++..+..+......+...++.+++|+++|| +|||+.++.+.++..++.++++.....+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~------------- 360 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ------------- 360 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC-------------
Confidence 34446789988888888778888899999999999999 7999999999999988888776542100
Q ss_pred CcCcCCCCCchhHHHHHHHHHHHHHhccc-cccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 008651 98 LVNQCDDADGTQVAILFTGLYLFACGTGG-VKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW-- 174 (558)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~-- 174 (558)
.... ....+.++.+.+.+. ..|....++.|.+|+++ |++++++.+...++|.++++.+.+.
T Consensus 361 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 361 ---------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred ---------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0011 223333444444433 34778899999999876 9999999999999999888666554
Q ss_pred ----hccccchhhHHHHHHHHHHHHHHHHH
Q 008651 175 ----ISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 175 ----l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+.+..+|+..|++.++..+++.++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred hccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence 44678899889887766555554443
No 171
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.94 E-value=1.8e-08 Score=105.79 Aligned_cols=163 Identities=13% Similarity=0.042 Sum_probs=118.5
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHH-HHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTG-TAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
..+......+.+.|+. +.|++.++.|++...+.. ...++.+++|++.|| +|+||.+..+.++..+.......... .
T Consensus 221 ~~~~~~~~~~~~~~l~-~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~-~ 297 (390)
T TIGR02718 221 AMTAVSGFGLSKLYLV-DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAA-F 297 (390)
T ss_pred HHHHHHHHHHhhHHHH-hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 3445556667778886 479999999999888764 666778999999999 79999998877665333332222110 0
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CChhhhhhhhhhHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDE-RDPKEAAKFSSFFNWFLFSLTV 163 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~-~~~~~~~~r~~~~~~~~~~~~i 163 (558)
... ......+....+.+++.|...+...+...+..++ +. +++.+++.+...++
T Consensus 298 ~~~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~l 351 (390)
T TIGR02718 298 WLA--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTRDL 351 (390)
T ss_pred ccC--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHHH
Confidence 000 0223334444556666777777888887777765 44 89999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 008651 164 GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 164 g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~ 197 (558)
|..+||.++|++.+..||+..|++.++..+++.+
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987766555543
No 172
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.94 E-value=1.2e-08 Score=103.65 Aligned_cols=144 Identities=12% Similarity=0.031 Sum_probs=114.2
Q ss_pred hhHHHHHHHhhhh--cCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 11 ANMVSLVTYFHGY--MNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 11 ~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
++..+++.|+.+. +|+++.+.+...+.+..+..++.++++++.|| +|+||.+.++.++..++.++.....
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~------- 229 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH------- 229 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 4456789999753 79999999999999999999999999999999 7999999888877777665544421
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG 168 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 168 (558)
+. ....+.++.|++.+.+.|...++..+.+|++. +.+.++. ....+|++++
T Consensus 230 --------------------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 230 --------------------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL-CLAIVGGAIV 280 (310)
T ss_pred --------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH-HHHHhcchHH
Confidence 11 12235558899999999999999999888753 3344443 5667899999
Q ss_pred HHHHHHhccccchhhHHHHHHHH
Q 008651 169 VTFIVWISTNQGWDWSFGVCTIA 191 (558)
Q Consensus 169 ~~~~~~l~~~~gw~~~f~i~~~~ 191 (558)
|.+.|.+.+..|.+.+|+++.+.
T Consensus 281 P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999998865544
No 173
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.91 E-value=2.2e-08 Score=108.48 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=135.9
Q ss_pred hHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 12 NMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
+...+|.+..+.+|.+....|++.+++.++..++.++.+++.+| +++++.+..+.+++.++.+.++++.
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~---------- 305 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSP---------- 305 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcch----------
Confidence 34567888888999999999999999999999999999999999 7999999999988888888887764
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
+.+...+..++.|++.........+.+....|++. ||+.++++++....+..+|..+
T Consensus 306 -----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~lGsll 362 (524)
T PF05977_consen 306 -----------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMPLGSLL 362 (524)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHHHHHHH
Confidence 56677888889999988888888999999999987 9999999999999999999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 172 IVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 172 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
.|.+.+.+|-+.++.++++..+++.++..
T Consensus 363 ~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 363 WGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776655555443
No 174
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.89 E-value=1.3e-08 Score=108.36 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=109.2
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
..+.|++..++ +..+.+++.+...++..++.++.|+++|| +|||+++..+.++..++.+...+..
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------------- 308 (437)
T TIGR00792 244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAG------------- 308 (437)
T ss_pred hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 33444444455 56677788888899999999999999999 7999999999888888877766532
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhh-hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKE-AAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~-~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
.+.+.+++..++.|++.+...+...++++|..|.++.+. ..+++.+++++++..++|..+|+.+.|
T Consensus 309 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 309 -------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 144566677788899999999999999999987443211 113689999999999999999999999
Q ss_pred Hhccccchh
Q 008651 174 WISTNQGWD 182 (558)
Q Consensus 174 ~l~~~~gw~ 182 (558)
++.+..||.
T Consensus 376 ~ll~~~G~~ 384 (437)
T TIGR00792 376 LILGIIGYV 384 (437)
T ss_pred HHHHHcCCC
Confidence 998776763
No 175
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.89 E-value=3.4e-07 Score=95.74 Aligned_cols=135 Identities=7% Similarity=0.084 Sum_probs=99.4
Q ss_pred CCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccch
Q 008651 347 LPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMS 426 (558)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (558)
..+.+-..-+++-++..++..++|+- +.+..|+.+.++=++.+...+ +
T Consensus 411 ~~a~~~~gEI~~~ffs~klI~kiGHv-----------~v~~lgLa~~~~Rf~~~S~L~---------------------n 458 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLIEKIGHV-----------NVMYLGLACNVGRFLYYSYLQ---------------------N 458 (618)
T ss_pred hhhhhccchHHHHHHHHHHHHHhccc-----------ceeeehhhHHHHHHHHHHHhc---------------------C
Confidence 34444444455555666777776665 446778888888777777664 7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhH
Q 008651 427 VFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWC-SIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLN 505 (558)
Q Consensus 427 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~ 505 (558)
+|.++++-++.|+..+......-+|+...+|++.+.+++++... .-.+|-.+|..++|.+.. . ....
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~---------~---fg~~ 526 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE---------R---FGAR 526 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe---------e---ehhH
Confidence 88889999999999999998888999999999999999998765 566888888888887752 1 1233
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008651 506 YFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 506 ~~f~~~~~~~~v~~~~~~~~ 525 (558)
.+|+.+++.+++..+++...
T Consensus 527 ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 527 TTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45777777777766655543
No 176
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.88 E-value=1.6e-08 Score=109.76 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=119.4
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
+++++...+++.|+++.+|.|+.++|.....+.++..++.++.|++.|| +|||+.+..+.++..++..++.....
T Consensus 273 ~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~l~~~~~---- 347 (495)
T PRK14995 273 ITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYGLAMTDF---- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhcC----
Confidence 4566777788999999999999999999999999999999999999999 79999999888888888776654321
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
..+.+...+..++.|+|.|...+.....+.+..|+++ ++.+.++++...++|..
T Consensus 348 --------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 348 --------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGAG 401 (495)
T ss_pred --------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHHH
Confidence 1133455667889999999999988999999988886 99999999999999999
Q ss_pred HHHHHHHHhcc
Q 008651 167 IGVTFIVWIST 177 (558)
Q Consensus 167 ~g~~~~~~l~~ 177 (558)
+|+.+.+.+.+
T Consensus 402 ~G~ai~g~i~~ 412 (495)
T PRK14995 402 LGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHH
Confidence 99999988854
No 177
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.88 E-value=2.7e-08 Score=104.66 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=117.0
Q ss_pred HHHHHHhhhhc---CCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 14 VSLVTYFHGYM---NFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 14 ~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
...+.|+...+ +.+..+.|...+...+...++.++.|++.|| +|||+.+.++.++..++..+...+.
T Consensus 236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~--------- 305 (396)
T TIGR00882 236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFAT--------- 305 (396)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcC---------
Confidence 34667776665 4556677888888888889999999999999 7999999999888888777655532
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNW-FLFSLTVGSIIGV 169 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~g~ 169 (558)
+.+.+++.+++.|++..........+..+..+++. ++...+. ++...++|.++++
T Consensus 306 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~~~ 361 (396)
T TIGR00882 306 ------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIFLS 361 (396)
T ss_pred ------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHHHH
Confidence 45566778889998876665556666677666664 6666666 5678899999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATV 197 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~ 197 (558)
.++|++.+..||+.+|.+.++..++..+
T Consensus 362 ~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 362 TLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999987776555444
No 178
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.88 E-value=1.8e-08 Score=108.87 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=105.3
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchH-----HHHHHHHHHHHHHHHHHHhhhcc
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFK-----TCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-----~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
++...+++.|+.+++|++..+++.+.+.+.++..++.+++|+++|| +|||+ ..+........+..++.+..
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--- 344 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGGVFCIWLGR--- 344 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHhcc---
Confidence 4455678889988899999999999999999999999999999999 78762 22222222222222222211
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
..+.+...+..++.+++.+...+...+++.+..|+ + |+...++.+...++|
T Consensus 345 ----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~g~lg 395 (476)
T PLN00028 345 ----------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-S------LGVISGLTGAGGNVG 395 (476)
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-h------chhhhhhhhccccHH
Confidence 01233444445556665555555556666666553 3 899999987777777
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhc
Q 008651 165 SIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGK 203 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 203 (558)
+.+++.+.+ .....+|+..|++.++..+++.++.++.+
T Consensus 396 ~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 396 AVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 777766544 22345799999998877777766655543
No 179
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.87 E-value=1.3e-08 Score=105.37 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=106.8
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHH--HHHHHHHHHHhhhccc
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCI--ELLGLAILAIQAHAHQ 85 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~--~~~~~~~~~~~~~~~~ 85 (558)
..++...+++.|+++.+|++..+.++..+.+.++..++.++.|+++||..+||+..+..... ..++........
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 306 (379)
T TIGR00881 231 VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP---- 306 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc----
Confidence 34456677889999999999999999999999999999999999999832334333222111 111211111100
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
..+.....+..++.|+...+..+....+..|.+|+++ |+++.++.+...++|.
T Consensus 307 ---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 359 (379)
T TIGR00881 307 ---------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGFFAYLGG 359 (379)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHHhhhhhh
Confidence 0133344555666676655666666788899999887 9999999999999999
Q ss_pred HHHHHHHHHhccccchhhHH
Q 008651 166 IIGVTFIVWISTNQGWDWSF 185 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f 185 (558)
.++|.+.|++.+++||+..|
T Consensus 360 ~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 360 ILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhhhHHHHHHhhcccccC
Confidence 99999999999999998764
No 180
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.87 E-value=8.6e-08 Score=100.92 Aligned_cols=155 Identities=8% Similarity=0.034 Sum_probs=115.8
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
.++++...++++++.+++|++..+.+.+...+.++..++.++.|++.|| .+ |+.++.+..+..+....+....
T Consensus 230 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~-~~~l~~~~~~~~~~~~~l~~~~----- 302 (394)
T PRK10213 230 AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SV-KLALAGAPLVLAVSALVLTLWG----- 302 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-hhHHHHHHHHHHHHHHHHHHHh-----
Confidence 3445555565444456889999999999999999999999999999999 44 4544444444343333332221
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
.+.+.+.+..++.|++.+...+..++++.+..|++ +++..++++...++|..
T Consensus 303 ---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lg~~ 354 (394)
T PRK10213 303 ---------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQLANT 354 (394)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHHHHHH
Confidence 14556677888899999999999999999888744 56777777778899999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTNQGWDWSFGVCTIAVLFAT 196 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~ 196 (558)
+|+.++|++.+..|++..++.++...++..
T Consensus 355 ~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 355 CGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 999999999999999998888776544443
No 181
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.86 E-value=1.7e-08 Score=109.01 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=119.8
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
.+.+++...++|.|+++.+|.++.++++......++..++.++.|++.|| +|||+.+.++.++..++..++.+... |
T Consensus 268 ~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~~-~- 344 (485)
T TIGR00711 268 GLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTFT-P- 344 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccCC-C-
Confidence 35667777889999999999999999999999999999999999999999 79999999998888888877663210 0
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
+.+.+.+....++.|+|.+...+.......+..|+++ |+++.++++...++|.
T Consensus 345 ---------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~ 397 (485)
T TIGR00711 345 ---------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQLGG 397 (485)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHHHHH
Confidence 1244556667888999999888777777788888776 9999999999999999
Q ss_pred HHHHHHHHHhccc
Q 008651 166 IIGVTFIVWISTN 178 (558)
Q Consensus 166 ~~g~~~~~~l~~~ 178 (558)
.+|+.+.+.+.++
T Consensus 398 ~ig~~i~g~~~~~ 410 (485)
T TIGR00711 398 SIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 182
>TIGR00895 2A0115 benzoate transport.
Probab=98.86 E-value=2e-08 Score=104.78 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=106.7
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
...++....+++ ++.+++|.+..+.++..+.+.++..++.+++|+++|| +|||+.+....+ ..+...++....
T Consensus 263 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~---- 335 (398)
T TIGR00895 263 LVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLL-GAVFAVLVGSTL---- 335 (398)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHH-HHHHHHHHHHHh----
Confidence 345555666666 6677899999999999999999999999999999999 799855444333 333333322211
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
.+.+.+++..++.|++.+...+...+++.|.+|+++ |++++++.+....+|.
T Consensus 336 ----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 336 ----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRLGA 387 (398)
T ss_pred ----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHH
Confidence 144566777888999999999999999999999886 9999999999999999
Q ss_pred HHHHHHHHHh
Q 008651 166 IIGVTFIVWI 175 (558)
Q Consensus 166 ~~g~~~~~~l 175 (558)
.+||.++|++
T Consensus 388 ~~g~~~~G~l 397 (398)
T TIGR00895 388 IIGPILAGYL 397 (398)
T ss_pred HHHHHhHHhc
Confidence 9999999876
No 183
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.85 E-value=2.6e-08 Score=103.12 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=110.7
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL-SRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
...+++...++|.|++ +.|.+..+.+.+.+.+.++..+++++.|+++|| + +||+.+..+.++..++..++.+...
T Consensus 210 ~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 285 (355)
T TIGR00896 210 SGLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAPM-- 285 (355)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhhh--
Confidence 4567777788999986 579999999999999999999999999999999 7 5666777777777777776665421
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
+. .. ...++.|++.|...+...+.+.+..++++ +++..+++.+...++|
T Consensus 286 ------------------------~~-~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~ 334 (355)
T TIGR00896 286 ------------------------HG-LW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSIGYLL 334 (355)
T ss_pred ------------------------hH-HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHHHHHH
Confidence 11 11 23567899999999888887776655433 3788889988888999
Q ss_pred HHHHHHHHHHhccccc
Q 008651 165 SIIGVTFIVWISTNQG 180 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~g 180 (558)
..+||.+.|++.++.|
T Consensus 335 ~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 335 AALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988776
No 184
>PRK10133 L-fucose transporter; Provisional
Probab=98.85 E-value=3.8e-08 Score=105.08 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=117.5
Q ss_pred hhhhhHHHHHHHh-hhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 8 SFVANMVSLVTYF-HGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 8 ~~y~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
+.++...+++.|+ ++.+|+++.++++....+.++..++.+++|++.|| +||||++..+.++..++.++..+..
T Consensus 273 ~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~----- 346 (438)
T PRK10133 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG----- 346 (438)
T ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 3444556778886 55789999999999999999999999999999999 7999999988777666655544421
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
+. ..+...++.|+|.+.+.|...+...+.+|++. +.+.++..+ ..+|+.
T Consensus 347 ----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~-~~~g~~ 395 (438)
T PRK10133 347 ----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM-TIIGGG 395 (438)
T ss_pred ----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-Hhccch
Confidence 11 22455678999999999999999999987653 444444433 336788
Q ss_pred HHHHHHHHhccccc-hhhHHHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTNQG-WDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 167 ~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~ 198 (558)
++|.+.|++.+..| -+..|+++.+..+...+.
T Consensus 396 ~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 396 IVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 88899999999887 788888776665544433
No 185
>PRK10054 putative transporter; Provisional
Probab=98.85 E-value=3.7e-08 Score=103.76 Aligned_cols=153 Identities=13% Similarity=-0.033 Sum_probs=119.0
Q ss_pred HHHHHHhhh--hcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 14 VSLVTYFHG--YMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 14 ~~l~~yl~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
..++.|+.. +.+.+....++....+........++.|++.|| +++|+.+..+.++..++.....+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~--------- 296 (395)
T PRK10054 227 SCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLVGFIFSGN--------- 296 (395)
T ss_pred hhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHcch---------
Confidence 345556543 345666677888888888778888899999999 79999999998888888877765321
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
+.+.+.+...+.++|.+...|....++.+..|++. |+++++... ...+|..+||.+
T Consensus 297 -----------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-~~~~G~~~Gp~~ 352 (395)
T PRK10054 297 -----------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-LGWLGAAINPLV 352 (395)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-HHHHHHHHHHHH
Confidence 45566677889999998888999999999999876 889888654 566899999999
Q ss_pred HHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 172 IVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 172 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+|.+.++.|....|++.+....++.++.+
T Consensus 353 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 353 SGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 99999999988888876555554444443
No 186
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.83 E-value=9.9e-08 Score=99.42 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=111.9
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
.++......+.|+++++|.++.+.+++...+.++..++.++.|++.|| +|||+.+..+..+..++..++......+
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITAILG--- 296 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 345555666778888999999999999999999999999999999999 7999999998888887777766543100
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHH-HHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTV-GSI 166 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~i-g~~ 166 (558)
......+++..++.|+|.+...+.......|..|+ + |+++.++++..... |++
T Consensus 297 -------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~~~g~i 350 (385)
T TIGR00710 297 -------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTASALFGTLRLVLGAI 350 (385)
T ss_pred -------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHHHHHHHHHHHHHHH
Confidence 01344556667788899998889888888888764 3 89999998777654 555
Q ss_pred HHHHHHHHhccccchhhHHHHH
Q 008651 167 IGVTFIVWISTNQGWDWSFGVC 188 (558)
Q Consensus 167 ~g~~~~~~l~~~~gw~~~f~i~ 188 (558)
.++. .+.+.+..+|...+...
T Consensus 351 ~~~~-~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 351 VGYL-VSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHH-HHhccccChHHHHHHHH
Confidence 5554 44666555555554443
No 187
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.82 E-value=1.2e-07 Score=99.99 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=103.3
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHH-HHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFT-GTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..+.|+.+++|++..+.+++.+... .+..++.+++|++.|| +|||+.+..+.++..+..+........+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~--------- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP--------- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 3445677789999999999887654 4688999999999999 7999998877777665544443221100
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHH----HHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLY----LFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
.+.+.+.+... ..|++.+...+....++.+.+|.++ ++++....++|..++.
T Consensus 301 --------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~ 356 (402)
T PRK11902 301 --------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVG 356 (402)
T ss_pred --------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHH
Confidence 13334444443 3445555556666666666655432 3455555677887677
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
.++|.+.+.+||+..|.+.+++.+++.++.
T Consensus 357 ~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 357 PTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999887776665554
No 188
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.82 E-value=6e-08 Score=102.31 Aligned_cols=152 Identities=17% Similarity=0.091 Sum_probs=112.2
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
...+|.|+++..+ ++.+.+++.+...+.......+.+++.||+++.++.+..+.++..++..+++.+.
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------- 295 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------- 295 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 3456778766555 7788898888877766655555566665436777777788777777777666543
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
+.+.+.+..++.++|.+...|...+++.+..|+++ |+++++++....++|..+||.++
T Consensus 296 ----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 296 ----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccch
Confidence 34456666778888888888999999999999887 99999999999999999999999
Q ss_pred HHhcccc---c-hhhHHHHHHHHHHHHHHH
Q 008651 173 VWISTNQ---G-WDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 173 ~~l~~~~---g-w~~~f~i~~~~~~~~~~~ 198 (558)
|++.++. + ....|++..+..+++.+.
T Consensus 354 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 354 GWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9998764 2 245555555444444433
No 189
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=3.5e-06 Score=88.59 Aligned_cols=105 Identities=11% Similarity=-0.045 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHH
Q 008651 35 LTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILF 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (558)
..+-.....+..++++.+.|+ +|.|..++++...+.+-.+....- |-+.++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~----------------------------N~y~~y 106 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP----------------------------NSYYLY 106 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc----------------------------chHHHH
Confidence 455567777889999999999 899999999998887766666553 456889
Q ss_pred HHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 115 TGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 115 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
.+-++.|+|.+..+...-.++++..+++. +.+..++.-...+.+.++|..+...
T Consensus 107 fssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 107 FSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred HHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhee
Confidence 99999999999999999999999988776 7777777766777777766544433
No 190
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.80 E-value=7.4e-08 Score=115.31 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=123.1
Q ss_pred hhhhHHHHHHHhhhhcCCCch-hhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 9 FVANMVSLVTYFHGYMNFSLT-KSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 9 ~y~~~~~l~~yl~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
.+....+++.|+.+.+|++.. +.+++.+.+.++..++.++.|+++|| +++++.+.++.++..++.+++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~------ 320 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAP------ 320 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhh------
Confidence 344556788899999999999 99999999999999999999999999 7999999888888887777776643
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
+.+.+++..++.|++.+...+...+++.+.+|++. |++++++.++..++|.++
T Consensus 321 ---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~~ 373 (1146)
T PRK08633 321 ---------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGMLL 373 (1146)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHHH
Confidence 45667778889999999999999999999999887 999999999999999988
Q ss_pred HHHHHHHhcc-ccchhhHHHHHHHH
Q 008651 168 GVTFIVWIST-NQGWDWSFGVCTIA 191 (558)
Q Consensus 168 g~~~~~~l~~-~~gw~~~f~i~~~~ 191 (558)
++.+++.+.. .+++...|++.+.+
T Consensus 374 ~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 374 FLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8877776654 24555566554443
No 191
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.80 E-value=2e-07 Score=98.12 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=118.0
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
......++.|+++.+|.++.+.|++.+.+.++..++.++.+++.|| .++|+++..+. +..+......+..
T Consensus 222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~-~~~~~~~~~~~~~-------- 291 (393)
T PRK11195 222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGI-LMGLVVLLMALQH-------- 291 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHH-HHHHHHHHHHHHh--------
Confidence 3344556678888899999999999999999999999999999999 79998887775 3333333333321
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGV 169 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 169 (558)
+.+...+..++.|++.+...+...+.+.+..|++. ++++++++.+...++|..++.
T Consensus 292 -------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~ 347 (393)
T PRK11195 292 -------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLML 347 (393)
T ss_pred -------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHH
Confidence 44556677778999999888888888888655442 279999999999999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 170 ~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
.+.+.+ +..|-+..+.+.....++.+.+...
T Consensus 348 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 348 GLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 888866 4567777777666555555444433
No 192
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.77 E-value=1e-07 Score=102.66 Aligned_cols=163 Identities=15% Similarity=0.057 Sum_probs=110.9
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHH--------HHHHHHHHHHHHHH
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTC--------VLFGCIELLGLAIL 77 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l--------~~~~~~~~~~~~~~ 77 (558)
...+|....++|.|+++.+|++..+.++..+...++..++.+++|+++|| +++|+.. ..+......+..+.
T Consensus 274 ~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (465)
T TIGR00894 274 FWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFNGIGGLGPGIFAY 352 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777899999999999999999999999999999999999999998 5644321 11111111111111
Q ss_pred HHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHH
Q 008651 78 AIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWF 157 (558)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 157 (558)
..... ..+....++...+.+.+.++..+.......|..|+ . ++.+.++.
T Consensus 353 ~~~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~ 401 (465)
T TIGR00894 353 ALPYL------------------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGFIKGIT 401 (465)
T ss_pred HHHHc------------------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHHHHHHH
Confidence 11110 01223334444455555555555555555666654 3 89999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHHHHH
Q 008651 158 LFSLTVGSIIGVTFIVWISTNQ---GWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 158 ~~~~~ig~~~g~~~~~~l~~~~---gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+...++|+.++|.+.+++.+.. +|+..|.+.+...+++.++..
T Consensus 402 ~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 402 GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 9999999999999999887643 488888888777666655543
No 193
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.77 E-value=1e-07 Score=103.67 Aligned_cols=161 Identities=13% Similarity=0.077 Sum_probs=105.4
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhH------------HHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHH
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSAT------------TLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGL 74 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~ 74 (558)
+.+|++..++|.++ ++.|++..+.+. ......++..++.++++++.|| +|||+.++.+..+..++.
T Consensus 302 ~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~ 379 (502)
T TIGR00887 302 IAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLF 379 (502)
T ss_pred HHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHH
Confidence 46777777777777 467887654322 1223344555677889999999 799999998887777776
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhH
Q 008651 75 AILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFF 154 (558)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~ 154 (558)
.+.++... + ..+...+...-+...++..+..+....+.+|.+|.+. |++++
T Consensus 380 ~~l~~~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~ 430 (502)
T TIGR00887 380 FVLGFAYN-H----------------------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAH 430 (502)
T ss_pred HHHHHHHH-h----------------------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHH
Confidence 66665421 0 0011111111112222233344566777899999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc----------cchhhHHHHHHHHHHHHHHH
Q 008651 155 NWFLFSLTVGSIIGVTFIVWISTN----------QGWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 155 ~~~~~~~~ig~~~g~~~~~~l~~~----------~gw~~~f~i~~~~~~~~~~~ 198 (558)
++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988773 34455666665555544443
No 194
>PRK09848 glucuronide transporter; Provisional
Probab=98.77 E-value=5.3e-08 Score=104.34 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=113.2
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
.+++......+.|+++.+|.++...++......++..++.++.++++|| +|+|+++.++.++..++.+++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~----- 315 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVS----- 315 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 3344444455667777788776666655555567788899999999999 7999999999988888887776532
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhh-hhhhhHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAA-KFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~-~r~~~~~~~~~~~~ig~ 165 (558)
..+.+.+++..++.|+|.+...+...++.+|..|.++-+... +++..++.+.+...+|.
T Consensus 316 --------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ 375 (448)
T PRK09848 316 --------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ 375 (448)
T ss_pred --------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence 124556677788899999999999999999998866432222 24888899999999999
Q ss_pred HHHHHHHHHhccccch
Q 008651 166 IIGVTFIVWISTNQGW 181 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw 181 (558)
.+|+.+.+.+.+..||
T Consensus 376 aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 376 AIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999998887655554
No 195
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.77 E-value=6.4e-08 Score=98.80 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=126.5
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
.....|-..++|++..+...+...-++...++++++|+|.|| +|.|+++..+++++.+..+...+..
T Consensus 273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~------------ 339 (438)
T COG2270 273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLE------------ 339 (438)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHcc------------
Confidence 445567788999999999999999999999999999999999 8999999999999888877776643
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
....+++.-++.|...|+.++..-++.++.+|+++ -+++||+|.......+.+||.+.+
T Consensus 340 ---------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~ 398 (438)
T COG2270 340 ---------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVA 398 (438)
T ss_pred ---------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHH
Confidence 23356666778999999999999999999999997 799999999999999999999999
Q ss_pred Hhccccc-hhhHHHHHHHHHHHHHHH
Q 008651 174 WISTNQG-WDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 174 ~l~~~~g-w~~~f~i~~~~~~~~~~~ 198 (558)
.+.+..| -|..+..-.++..+++++
T Consensus 399 v~t~iTg~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 399 VITQITGSSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred HHHHHhcchhhHHHHHHHHHHhhHhh
Confidence 9887665 455555544444455444
No 196
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.76 E-value=3.4e-07 Score=80.14 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=100.8
Q ss_pred CcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhH
Q 008651 349 VIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVF 428 (558)
Q Consensus 349 ~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (558)
....+..++..++.+++.||++|| +.+..+..+..++.+..... .+.+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 52 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS---------------------SNIT 52 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh---------------------ccHH
Confidence 344566778888999999999888 44667777777776665543 2455
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHH
Q 008651 429 WLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFY 508 (558)
Q Consensus 429 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f 508 (558)
......++.+++.+...+....+..|..|++.|++.+++.++...+|..+++.+.+.+.+ . .++...|
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~---~~~~~~~ 120 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ---------F---LGWRAPF 120 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc---------c---cchHHHH
Confidence 666678899999998889999999999999999999999999999999999999887752 1 1233455
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008651 509 WLLAGISVLNFGFYLACA 526 (558)
Q Consensus 509 ~~~~~~~~v~~~~~~~~~ 526 (558)
++.+.+.++..+..+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 121 LFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 666666666666555443
No 197
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.74 E-value=9.7e-08 Score=114.24 Aligned_cols=170 Identities=9% Similarity=-0.069 Sum_probs=124.3
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
+.++++..++|.|+++.+|.+..+.|++.+.+.++..++.++.|+++|+ .++++.+..+.++..++.+.+.+... ...
T Consensus 239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 316 (1140)
T PRK06814 239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASS-SVP 316 (1140)
T ss_pred HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhccc-ccc
Confidence 3445666788999999999999999999999999999999999999998 57777777666666655554444200 000
Q ss_pred CCCCCCCCCCCCcC-cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVN-QCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
.++.. ... .+. ....+.+.++++.++.|++.+...+...+++.+.+|++. |+++++..+...++|.
T Consensus 317 ~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~~ 383 (1140)
T PRK06814 317 AEPAQ------LKSILVF-LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAFM 383 (1140)
T ss_pred ccccc------ccchhhh-hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHHH
Confidence 00000 000 000 000144567788888999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHHhc-cccchhhHHHHHHHH
Q 008651 166 IIGVTFIVWIS-TNQGWDWSFGVCTIA 191 (558)
Q Consensus 166 ~~g~~~~~~l~-~~~gw~~~f~i~~~~ 191 (558)
.+|+.+++.+. ...++...|++.+..
T Consensus 384 ~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 384 VAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999988886 345667666655544
No 198
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.69 E-value=1.2e-07 Score=98.20 Aligned_cols=134 Identities=19% Similarity=0.098 Sum_probs=104.6
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHH-HHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 5 ESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFT-GTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHA 83 (558)
Q Consensus 5 ~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~ 83 (558)
-.++++.....++.|+++ +|++..+.+.+.+.+. +...++.+++|+++|| +||||.+..+.++..++..+..+....
T Consensus 221 ~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (356)
T TIGR00901 221 YKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWLASN 298 (356)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888899999976 9999999998888776 5778999999999999 799999998888877776655543210
Q ss_pred cccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 84 HQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
. .+++ -+..+.+.+....++.+++.+...+...+++.|.+|+++ |++.+++++...|
T Consensus 299 ~--------------~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 299 G--------------HHDG--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA 355 (356)
T ss_pred C--------------cccc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 0 0000 001245667778888999999999999999999999998 9999999887665
No 199
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.68 E-value=1.4e-07 Score=99.38 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=103.4
Q ss_pred HHHHhhh-hcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCc-hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 16 LVTYFHG-YMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSR-FKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 16 l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
.-+|+++ +.+.+++-.|+++++..++..+..+..|+-..| .|+ |+.++.|.++.++|.++.......|
T Consensus 57 ~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~--------- 126 (488)
T KOG2325|consen 57 MWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVP--------- 126 (488)
T ss_pred cchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 4456654 478889999999999999999999999999999 565 8889999999999999984433222
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+...+.++++|++.|+|.|.. +..-+++++....++ |.++++....+..+|.++||.+..
T Consensus 127 -------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 127 -------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------RPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred -------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------hHHHHHHhhhHHHHHHHHhHHHHH
Confidence 125778999999999997755 456688888776666 899999988877788888877765
Q ss_pred Hh
Q 008651 174 WI 175 (558)
Q Consensus 174 ~l 175 (558)
.+
T Consensus 187 ~f 188 (488)
T KOG2325|consen 187 AF 188 (488)
T ss_pred HH
Confidence 44
No 200
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2e-07 Score=89.81 Aligned_cols=141 Identities=17% Similarity=0.118 Sum_probs=114.6
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHH-HHHHHHHHHhhhccccCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIE-LLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
.-+.++++.+|+|+.+++.+.+.....+.+..++.|.++|+ .||+-..+.+..+. ..+..++.+.-
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~Ft~------------ 352 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFFTF------------ 352 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHhhh------------
Confidence 45678999999999999999999999999999999999999 69998877776654 45666666643
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
+.=+++..+.|+.......+.++.++-..|+++ .|++++..+...|+|-++.|++.|
T Consensus 353 -----------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag 409 (459)
T KOG4686|consen 353 -----------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAG 409 (459)
T ss_pred -----------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhh
Confidence 223556667787777777778999999999998 999999999999999999999999
Q ss_pred Hhccccc---hhhHHHHHHHH
Q 008651 174 WISTNQG---WDWSFGVCTIA 191 (558)
Q Consensus 174 ~l~~~~g---w~~~f~i~~~~ 191 (558)
.+.++-| |--+|.+....
T Consensus 410 ~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 410 FIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred eeecCCCchhhHHHHHHHHHH
Confidence 9988654 44455554443
No 201
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.67 E-value=6.6e-07 Score=95.04 Aligned_cols=169 Identities=9% Similarity=-0.026 Sum_probs=112.4
Q ss_pred hhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 9 FVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 9 ~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
|.+...++|.|+++.+. ............+...+..+++|+++|| +|+||++.++.++..++........ |.
T Consensus 268 fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~~~~~l~l--p~--- 339 (462)
T PRK15034 268 FIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFSALLFLTL--PG--- 339 (462)
T ss_pred HHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHh--cc---
Confidence 33455578888877653 3333333445578888999999999999 7999999999887777665443332 10
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC----------hh-----hhhhhhhh
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERD----------PK-----EAAKFSSF 153 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~----------~~-----~~~~r~~~ 153 (558)
....+.+.+.+..+...++.|.-+.+...++.+.+|+++ ++ .+.+-+.+
T Consensus 340 ----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 403 (462)
T PRK15034 340 ----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAA 403 (462)
T ss_pred ----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHH
Confidence 011256666666666667777778888888888887410 00 01124667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHHHHH
Q 008651 154 FNWFLFSLTVGSIIGVTFIVWISTNQ-GWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 154 ~~~~~~~~~ig~~~g~~~~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
.|+......+|+.+-|.+.+...+.. ++...|++..+..+++..+.+.
T Consensus 404 ~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 404 LGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888887766665544 4788888877776666655443
No 202
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.64 E-value=7.2e-07 Score=89.37 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=121.7
Q ss_pred cchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhh
Q 008651 3 GLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~ 82 (558)
.+.++.||.++.++|.++. +-|+|..++|++++..++.+....+.+-.+++|.-.+|+..+....++.+|...+.+.+.
T Consensus 218 GlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~ 296 (395)
T COG2807 218 GLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG 296 (395)
T ss_pred HhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence 3567899999999999884 779999999999999999999999999999998667888888888889999998887641
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
+...+. -+++|+|.|+.+|..-.++.+..++.+ +-++.-+.-+-..-
T Consensus 297 --------------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgmaQg~GY 343 (395)
T COG2807 297 --------------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMAQGVGY 343 (395)
T ss_pred --------------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHhhhhhH
Confidence 222222 489999999999999999999877654 13444444444444
Q ss_pred HHHHHHHHHHHHhcccc-chhhHHHHHHHH
Q 008651 163 VGSIIGVTFIVWISTNQ-GWDWSFGVCTIA 191 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~-gw~~~f~i~~~~ 191 (558)
+=++.||.+.|++.|.. +|+.++..-...
T Consensus 344 llAa~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 344 LLAAFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred HHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 45567899999998875 488776654443
No 203
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.63 E-value=1.5e-07 Score=96.51 Aligned_cols=132 Identities=22% Similarity=0.257 Sum_probs=112.9
Q ss_pred hhhhhhHHHHHHHhhhhcCCC-chhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFS-LTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
+.++....+++.|+.+++|.+ ..+.+...+...+...++.++.|+++|| +|+|+..........++.+.+......
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 296 (352)
T PF07690_consen 220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPFS-- 296 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHHH--
T ss_pred HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 456677788999999999999 7999999999999999999999999999 799888888887777777666654321
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
.+....++..++.|++.+...+...+++.|.+|+++ |+++.++.+...++|.
T Consensus 297 ----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~~ 348 (352)
T PF07690_consen 297 ----------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLGG 348 (352)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHHH
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 144566667888999999999999999999999886 9999999999999999
Q ss_pred HHHH
Q 008651 166 IIGV 169 (558)
Q Consensus 166 ~~g~ 169 (558)
.+||
T Consensus 349 ~igP 352 (352)
T PF07690_consen 349 IIGP 352 (352)
T ss_dssp HHHH
T ss_pred HHCC
Confidence 9987
No 204
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.61 E-value=2.2e-07 Score=100.34 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=136.4
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHH--HHHHHHHHHHHHHHHHHhh
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKT--CVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~--l~~~~~~~~~~~~~~~~~~ 81 (558)
+..++|+....+++.|.. ..+++..+++.++++..+...++.++.|+++|+ ...++. ..+++++..++...+.++.
T Consensus 309 ~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~~ 386 (509)
T KOG2504|consen 309 FAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFAT 386 (509)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677777888888886 899999999999999999999999999999999 564444 4444444444444444432
Q ss_pred hccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHH
Q 008651 82 HAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSL 161 (558)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~ 161 (558)
+++.++..-++.|+..|......+..+.|..+.++ ...++++.....
T Consensus 387 ---------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 387 ---------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQ 433 (509)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHh
Confidence 67788888899999999999988899999999887 999999999999
Q ss_pred HHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHHhc
Q 008651 162 TVGSIIGVTFIVWISTNQG-WDWSFGVCTIAVLFATVFVIMGK 203 (558)
Q Consensus 162 ~ig~~~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~ 203 (558)
.++.++||.+.|++.+..| |...|+.+++..+++...++...
T Consensus 434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999998888 99999999988887776655543
No 205
>PRK11043 putative transporter; Provisional
Probab=98.60 E-value=1.9e-06 Score=90.77 Aligned_cols=145 Identities=6% Similarity=-0.053 Sum_probs=106.2
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
.++.....+|.|++ ++|++..+.++....+.++..++.++++++.|| +|+|+.+....++..++.+.+......+
T Consensus 218 ~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 292 (401)
T PRK11043 218 AFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS--- 292 (401)
T ss_pred HHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 44555566777774 589999999998888888999999999999999 7999987766666555544433321100
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
..+...+++...+.+++.+...+...+...+..|+ + ++++.++++.....++..
T Consensus 293 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 293 -------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCFL 346 (401)
T ss_pred -------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHHH
Confidence 01344455666778888888888888888887764 3 899999999888888888
Q ss_pred HHHHHHHhccccchhh
Q 008651 168 GVTFIVWISTNQGWDW 183 (558)
Q Consensus 168 g~~~~~~l~~~~gw~~ 183 (558)
++.+.+.+.+......
T Consensus 347 ~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 347 ASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHccCCChhHH
Confidence 8888888876443333
No 206
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.4e-08 Score=104.42 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=120.0
Q ss_pred CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCc
Q 008651 344 GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPL 423 (558)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (558)
.+.++....+..+++.|+.+++.||+-|+ +.+..|..+-.++++..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRK-----------RVIAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eEEeeHHHHHHHHHHHHHHHH-------------------
Confidence 34556666778899999999999999998 448889999998888887653
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcch
Q 008651 424 PMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDK 503 (558)
Q Consensus 424 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~ 503 (558)
.+|.+.+.-.+.|+||....|....++.+.+|.+.|+++.++++++...|+.+|..+...+.+.+ ++
T Consensus 120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----------~~ 186 (493)
T KOG1330|consen 120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----------FW 186 (493)
T ss_pred --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----------cc
Confidence 66777788899999999999999999999999999999999999999999999888777665433 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 504 LNYFYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 504 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
|.+.|+..++++++.+++.+++.++.+++
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 44557888899988888888777665443
No 207
>TIGR00898 2A0119 cation transport protein.
Probab=98.55 E-value=8.6e-07 Score=96.42 Aligned_cols=133 Identities=14% Similarity=-0.027 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHH
Q 008651 34 TLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAIL 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (558)
......+....+.++.+++.|| +|||+.+.++.++..++.+++.+... ...+..
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~ 413 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV-------------------------DLYFLR 413 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-------------------------CchHHH
Confidence 3344556677888899999999 79999999998888888777766431 112334
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 008651 114 FTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVL 193 (558)
Q Consensus 114 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~ 193 (558)
.+..++.+++.+...+....+.+|.+|++. |++++++.+....+|++++|.+.+ +. ..++..++++.+...+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~ 485 (505)
T TIGR00898 414 TALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLAL 485 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHH
Confidence 444555666667777888899999999886 999999999999999999999988 43 3566677777666555
Q ss_pred HHHHHHH
Q 008651 194 FATVFVI 200 (558)
Q Consensus 194 ~~~~~~~ 200 (558)
++.++.+
T Consensus 486 ~~~~~~~ 492 (505)
T TIGR00898 486 LAGILTL 492 (505)
T ss_pred HHHHHHH
Confidence 5544433
No 208
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.55 E-value=2.1e-06 Score=90.10 Aligned_cols=138 Identities=13% Similarity=0.078 Sum_probs=90.3
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
...+.|+++++|++..+.+.+.+.+.++..++.++.|++.|| +|||+.+..+.++..++.+.+.+..
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------------ 290 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALSP------------ 290 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 344567778899999999999999999999999999999999 7999999999988888888777653
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
..........+.+.|.+...+. ....+..|.++ |+. ..+....++..+|+.+++
T Consensus 291 ---------------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~------~~g---~~~~~~~~~~~~g~~~~~ 344 (392)
T PRK10473 291 ---------------SHAVSLFGITLICAGFSVGFGV--AMSQALGPFSL------RAG---VASSTLGIAQVCGSSLWI 344 (392)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc------ccc---HHHHHHHHHHHHHHHHHH
Confidence 1222333333333333333322 22233444433 332 222334566666777777
Q ss_pred HhccccchhhHHHHHHH
Q 008651 174 WISTNQGWDWSFGVCTI 190 (558)
Q Consensus 174 ~l~~~~gw~~~f~i~~~ 190 (558)
++.+..|+.....+.++
T Consensus 345 ~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 345 WLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHhccchhHHHHHH
Confidence 77777777654444443
No 209
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.55 E-value=1e-06 Score=93.74 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=120.6
Q ss_pred hhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 6 SMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQ 85 (558)
Q Consensus 6 ~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (558)
.++........+.|.+..+|.+ ...+.....+.++..++.++.++++|| +|+||++..+.++..++.++..+...
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~--- 312 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGP--- 312 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHh---
Confidence 3444444556666776667766 567788888999999999999999999 79999999999999999998888641
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhh-hhhhhhHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEA-AKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~-~~r~~~~~~~~~~~~ig 164 (558)
.+.+.+++..++.|+|.+...+...++++|..+.++-+.. .+.+..++.+.....+|
T Consensus 313 ----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 313 ----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred ----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 2678889999999999999999999999999986653321 12478888899999999
Q ss_pred HHHHHHHHHHhccccch
Q 008651 165 SIIGVTFIVWISTNQGW 181 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~gw 181 (558)
..+++.+.+.+.+..|+
T Consensus 371 ~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999998887655554
No 210
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.54 E-value=1.6e-06 Score=90.31 Aligned_cols=156 Identities=11% Similarity=-0.028 Sum_probs=101.7
Q ss_pred cchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCch---HHHHH-HHHHHHHHHHHHH
Q 008651 3 GLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRF---KTCVL-FGCIELLGLAILA 78 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~l~~-~~~~~~~~~~~~~ 78 (558)
++....+|++..++|.|++ +.|++.. .+.......+...++ .++++|| ..|| +.... ..++..++....+
T Consensus 202 ~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~-~~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 202 GFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDR-VARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHH-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455788999999999995 4677754 555555544444443 5788888 4543 33332 2322333332222
Q ss_pred HhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHH
Q 008651 79 IQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFL 158 (558)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~ 158 (558)
... +....++...+.+++.....+...++.+|.+|++. |+++.++.+
T Consensus 276 ~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~~~ 322 (368)
T TIGR00903 276 FEL---------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGAIG 322 (368)
T ss_pred Hcc---------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccchhh
Confidence 221 12233344455666677777778899999999987 999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 159 FSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 159 ~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
...++|++.+|.+.+.+.. +-+..|.+.++..+++.+..
T Consensus 323 ~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 323 FTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887763 66667776665555544443
No 211
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.51 E-value=3.5e-06 Score=87.69 Aligned_cols=133 Identities=10% Similarity=0.024 Sum_probs=89.9
Q ss_pred hhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008651 10 VANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPK 89 (558)
Q Consensus 10 y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (558)
+....+.+.++.+.+|+++.+.++..+...++..++.+++|++.|| +|||+.+..+..+..+..+........
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~------ 283 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLVVSALL------ 283 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3344455667778899999999999999999999999999999999 799999998887655443333222110
Q ss_pred CCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH-HHHHHHHH
Q 008651 90 PCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS-LTVGSIIG 168 (558)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~-~~ig~~~g 168 (558)
+.+.+.+.++..+.+.+.+...+.....+.|..| ++ ++++.+..... ..+|+.++
T Consensus 284 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~~~g 339 (377)
T PRK11102 284 -----------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGIGAIVG 339 (377)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHHHHHHH
Confidence 0133344444545555555556666667777766 33 78888876543 34666666
Q ss_pred HHHHH
Q 008651 169 VTFIV 173 (558)
Q Consensus 169 ~~~~~ 173 (558)
+.+++
T Consensus 340 ~~~~~ 344 (377)
T PRK11102 340 ALLSL 344 (377)
T ss_pred HHHHh
Confidence 65543
No 212
>PRK09669 putative symporter YagG; Provisional
Probab=98.48 E-value=2.3e-06 Score=91.62 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=94.9
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCch
Q 008651 29 TKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGT 108 (558)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (558)
...+.+.....+...++.+++++++|| +|+|+++..+.++..++.....+.. +.
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~-------------------------~~ 317 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIP-------------------------PS 317 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhC-------------------------cc
Confidence 334455556677778888999999999 7999999988776665443333321 12
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008651 109 QVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAA-KFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGW 181 (558)
Q Consensus 109 ~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~-~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw 181 (558)
+.+.+++..++.|++.+...+...++++|..+.++.+... +.+..++.+.+..++|..+|+.++|++.+..|+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566777888999999999999999999998755432211 235677889999999999999999998776666
No 213
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.48 E-value=4.2e-05 Score=79.30 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=114.3
Q ss_pred HHHHHHhhhh-cCCCchhhhHHH-HHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 14 VSLVTYFHGY-MNFSLTKSATTL-TNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 14 ~~l~~yl~~~-~~~s~~~~~~~~-~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
+++..|+.++ .|+|..|..--+ -..+-.+....++...+.|. +|-|++++++.+...+...++.+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 4678899887 899999976433 34456666778888999998 7999999999988888888887764
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
+...+.+.-+..|++.+. ..+..+++-...|+++ -.++.++.....-+|..++..+
T Consensus 93 -----------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 93 -----------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred -----------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888899888776 3445666666666654 5677888888888888888777
Q ss_pred HHHhcc--ccchhhHHHHHHHHHHHHHHHHHH
Q 008651 172 IVWIST--NQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 172 ~~~l~~--~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
+-.+.. ..+++..+.+......+++++.++
T Consensus 149 gQllvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 149 GQLLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 776654 345667777777666666665444
No 214
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=7.5e-07 Score=90.06 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=119.3
Q ss_pred CCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCcc
Q 008651 345 PSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLP 424 (558)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (558)
+.+...-.+..++..|+.|.+.||+++| ..+.+|+.++..+.+++++.+
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~-----------ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYK-----------IPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccc-----------cHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 3344444677788999999999999999 449999999999999999864
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcch
Q 008651 425 MSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGM-KSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDK 503 (558)
Q Consensus 425 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~ 503 (558)
+...++++-.+.|+|......+..+++.+.+|++. ||+++|+......+|..+|+.++|++.+..|
T Consensus 158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G------------ 224 (464)
T KOG3764|consen 158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG------------ 224 (464)
T ss_pred -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC------------
Confidence 66788899999999999999999999999999776 6999999999999999999999998863221
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 504 LNYFYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 504 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
...-|.++++++++...+-+++.+.++.+
T Consensus 225 k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 225 KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 22338899999999988877776554443
No 215
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.47 E-value=2e-06 Score=89.06 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=87.8
Q ss_pred CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCc
Q 008651 344 GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPL 423 (558)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (558)
.+++.....+...++.++.+++.||++|| +.+.++.+++.++.++.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 34556666778889999999999999998 558888888888887776542
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 424 PMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 424 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.+.+.+++..++.|++.+.. +....++.+..|++.|++.+++......+|..+++.+.+.+.
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 14555666778888886654 456688999999999999999999888888888888776654
No 216
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.45 E-value=2.5e-06 Score=90.43 Aligned_cols=137 Identities=12% Similarity=-0.020 Sum_probs=104.3
Q ss_pred CCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchh
Q 008651 348 PVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSV 427 (558)
Q Consensus 348 ~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (558)
.....++..++.++.+.+.||++|| +.+..+.++.+++.+..... .+.
T Consensus 57 ~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a---------------------~~~ 104 (413)
T PRK15403 57 VSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT---------------------TSM 104 (413)
T ss_pred HHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc---------------------CCH
Confidence 3444566778888999999999998 55778888888877776653 266
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHH
Q 008651 428 FWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYF 507 (558)
Q Consensus 428 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 507 (558)
++++..-++.|++++...+....+..+..|++.+++.+++.+....+|..+++.+.+.+.+ +.++.+.
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~------------~~gw~~~ 172 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH------------FVHWKVL 172 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCHHHH
Confidence 6777788999999887667777778889999999999999999999999999988887652 1235566
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 008651 508 YWLLAGISVLNFGFYLACASW 528 (558)
Q Consensus 508 f~~~~~~~~v~~~~~~~~~~~ 528 (558)
|++.+++.++..+..++..++
T Consensus 173 f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 173 FAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 777777777766654444444
No 217
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.44 E-value=1.1e-05 Score=78.58 Aligned_cols=159 Identities=9% Similarity=0.085 Sum_probs=117.4
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
....+++.+|+|.+|...+.+.-.++..+ .++.|.+.|+ +|++.++.+|.+...+|+.++..+..-. .
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~--i-------- 91 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGR--I-------- 91 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCc--c--------
Confidence 35688999999999999999999999987 5889999999 7999999999999999999998875311 0
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
.....+.+.+...+.+.+.+....+......+.||++ ||++.++.-....+++.+-..+...+
T Consensus 92 ----------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 92 ----------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred ----------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHHHHHH
Confidence 0125667777777777777777777777777999964 99999998888888777766665555
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhc
Q 008651 176 STNQGWDWSFGVCTIAVLFATVFVIMGK 203 (558)
Q Consensus 176 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 203 (558)
.+.-.-+..+.+......++++...+.+
T Consensus 155 f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 155 FGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 4442233444444444444444444444
No 218
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.40 E-value=3.4e-06 Score=89.28 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=109.2
Q ss_pred hhhHHHHHHHhhhh-cCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 10 VANMVSLVTYFHGY-MNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 10 y~~~~~l~~yl~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
.+...+++.|+.+. .+.+...++...+.+..+..++.+++|+++|| +++||++.++.++..+..++..+..
T Consensus 249 ~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~------- 320 (410)
T TIGR00885 249 IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG------- 320 (410)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 34556778887543 25555556667777888899999999999999 7999998888877777766666642
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG 168 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 168 (558)
+. ......++.|++.+.++|...++..+..+++. ..+.+...+. -+|+++.
T Consensus 321 --------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~~-~~Gga~~ 371 (410)
T TIGR00885 321 --------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLVMA-IIGGGIV 371 (410)
T ss_pred --------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHHH-HhccchH
Confidence 11 23566778888889999999999999998763 2333333333 3999999
Q ss_pred HHHHHHhcccc------chhhHHHHHHHHHHH
Q 008651 169 VTFIVWISTNQ------GWDWSFGVCTIAVLF 194 (558)
Q Consensus 169 ~~~~~~l~~~~------gw~~~f~i~~~~~~~ 194 (558)
|.+.|++.|.. +.+..|+++.++.+.
T Consensus 372 p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 372 PPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 99999999954 578889887766443
No 219
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.37 E-value=8e-06 Score=80.64 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=110.8
Q ss_pred hhhcCCCc--hhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 008651 21 HGYMNFSL--TKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNL 98 (558)
Q Consensus 21 ~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (558)
..+++.+. ...++..+.+.+...++.++.|.++|| +|||+.+..+.....++.+++++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~---------------- 91 (338)
T COG0477 29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN---------------- 91 (338)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc----------------
Confidence 34555555 578999999999999999999999999 69998888888776666566655431
Q ss_pred cCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCC-CChhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhc
Q 008651 99 VNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDE-RDPKEAAKFSSFFNWFLF-SLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~~g~~~~~~l~ 176 (558)
...+.+++.|.++|++.+...+...+++.|.+|+ ++ |+...+.... ...+|..+++.+++.+.
T Consensus 92 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 92 ---------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred ---------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1577889999999999999999999999999997 33 8888888888 57888888887777665
Q ss_pred cc--cchhhHHHHHHHHH
Q 008651 177 TN--QGWDWSFGVCTIAV 192 (558)
Q Consensus 177 ~~--~gw~~~f~i~~~~~ 192 (558)
.. .+|+..|.+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 157 GALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHhcchHHHHHHHHHHH
Confidence 43 67888666655443
No 220
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.36 E-value=1.3e-05 Score=84.17 Aligned_cols=138 Identities=14% Similarity=0.025 Sum_probs=99.3
Q ss_pred HHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 008651 15 SLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGV 94 (558)
Q Consensus 15 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (558)
..+.|+++.+|.+..+.+++......+..++.++.+++.|| ++++.. .+.....++.+.........
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~---------- 295 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMW--QSVICCLLAGLLMWIPGWFG---------- 295 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHhc----------
Confidence 34557777799999999999888888888899999999999 573332 23223333322222111000
Q ss_pred CCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 95 APNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
..+.+.+..+.++.++|.+...|...+...|.+|++ ++...++.+...++|..+++.+++.
T Consensus 296 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 296 ------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113456677788899999999999999999988753 7899999999999999999999999
Q ss_pred hccccchhhH
Q 008651 175 ISTNQGWDWS 184 (558)
Q Consensus 175 l~~~~gw~~~ 184 (558)
+.+...+...
T Consensus 357 ~~~~~~~~~~ 366 (394)
T PRK11652 357 LPQTGQFSLG 366 (394)
T ss_pred ccCCchHHHH
Confidence 8766444433
No 221
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.36 E-value=7.1e-06 Score=78.58 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=94.4
Q ss_pred HhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 008651 19 YFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNL 98 (558)
Q Consensus 19 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (558)
|+.+++|+...++|.+.-+-.....+...+.|-++|+ -|||+..+. +.+.++++.+.-+-|
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvt----ycitYiLsCiTKhSp-------------- 122 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVT----YCITYILSCITKHSP-------------- 122 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceee----ehHHHHHHHHhhcCC--------------
Confidence 5566789999999998888888889999999999999 799998764 456666776664433
Q ss_pred cCcCCCCCchhHHHHHHHHHHHHHhccccccchhhh-hhccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhc
Q 008651 99 VNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSL-GADQFDERDPKEAAKFSSFFNW-FLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-i~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~g~~~~~~l~ 176 (558)
++-.++++|++-|+.++....+.-+. ++|.-+++.- +++-...-|+= ...++.+-++++...+-.+.
T Consensus 123 ----------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGlfgn~lv 191 (454)
T KOG4332|consen 123 ----------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLV 191 (454)
T ss_pred ----------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 56688999999999998887776554 4554422221 00001111111 11233334444445555665
Q ss_pred ccc--chhhHHHHHHHHHHHHHHH
Q 008651 177 TNQ--GWDWSFGVCTIAVLFATVF 198 (558)
Q Consensus 177 ~~~--gw~~~f~i~~~~~~~~~~~ 198 (558)
+.+ |--.+|-.++.+..++..+
T Consensus 192 d~~slGPVAPFdAAacfLaigmAv 215 (454)
T KOG4332|consen 192 DTFSLGPVAPFDAAACFLAIGMAV 215 (454)
T ss_pred HHhccCCCCchHHHHHHHHHHHHH
Confidence 554 4456666555444444433
No 222
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.35 E-value=4.2e-06 Score=90.40 Aligned_cols=132 Identities=15% Similarity=0.043 Sum_probs=98.5
Q ss_pred CchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 27 SLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 27 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
+....+++.+...++..++.++.++++|| +|+|+++.++.++..++.+...+....+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 320 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLAA---------------------- 320 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccC----------------------
Confidence 45566667776678889999999999999 7999999988887776666554421100
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAA-KFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGW 181 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~-~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw 181 (558)
+.+.+.+++.-++.|++.+...+...++++|..+.++-+... +.+..+++..+...+|..+|+.+.|++.+..|+
T Consensus 321 ~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 321 PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 124556667778889999999999999999998865422111 134578889999999999999999988766555
No 223
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.32 E-value=9.6e-06 Score=87.58 Aligned_cols=168 Identities=11% Similarity=-0.013 Sum_probs=122.0
Q ss_pred HHHHHHHhhhhcCCCch----hhhHHHHHHHHHHHHHhhHHH----HHhhcccCchHH--HHHHHHHHHHHHHHHHHhhh
Q 008651 13 MVSLVTYFHGYMNFSLT----KSATTLTNFTGTAFLLALFGG----FISDTYLSRFKT--CVLFGCIELLGLAILAIQAH 82 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~----~~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~--l~~~~~~~~~~~~~~~~~~~ 82 (558)
.+.++.|..++.+.+.. ..+++.+...+...+.+++.. ++.||..+.+.. +.+|+++..++.+.++++..
T Consensus 292 ~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~ 371 (475)
T TIGR00924 292 PTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIW 371 (475)
T ss_pred hhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466666665554322 267788878788887777755 455542233343 37788888888888776421
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
.. ......+.+.+++..++.++|.....|...+++++..|++. |++++++++....
T Consensus 372 ~~------------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~~l~~~ 427 (475)
T TIGR00924 372 FA------------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMWFLAQA 427 (475)
T ss_pred hc------------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 10 00112478889999999999999999999999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 163 VGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
+|..+++.+.....+..+|...|...++..++..+++++..+
T Consensus 428 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 428 MGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877778888888777766655555544443
No 224
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.31 E-value=1.7e-05 Score=83.49 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=120.6
Q ss_pred hhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008651 11 ANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKP 90 (558)
Q Consensus 11 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (558)
....+...|+++.-|.+....+.+.+.-.++-...-.+.+++-.| +|.|+++.++.+..++=..+.+..+..+
T Consensus 225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~------ 297 (400)
T PF03825_consen 225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPW------ 297 (400)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCc------
Confidence 344667788864433777888877777788888888999999999 7999999999999998888888763100
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH-HHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS-LTVGSIIGV 169 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~-~~ig~~~g~ 169 (558)
+.......++..++|+..|...++...++.+..|++. |+++.+++... ..+|.++|.
T Consensus 298 ----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~ 355 (400)
T PF03825_consen 298 ----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGS 355 (400)
T ss_pred ----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHH
Confidence 0112233444567999999999999999999999997 99999998875 579999999
Q ss_pred HHHHHhccccchh------hHHHHHHHHHHHHHHH
Q 008651 170 TFIVWISTNQGWD------WSFGVCTIAVLFATVF 198 (558)
Q Consensus 170 ~~~~~l~~~~gw~------~~f~i~~~~~~~~~~~ 198 (558)
.++|++.+++|-+ ..+.+++...++..++
T Consensus 356 ~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 356 LIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999887644 3444444443333333
No 225
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.29 E-value=6.6e-06 Score=87.89 Aligned_cols=165 Identities=12% Similarity=0.090 Sum_probs=112.4
Q ss_pred cchhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCc-------hHHHHHHHHHH--HHH
Q 008651 3 GLESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSR-------FKTCVLFGCIE--LLG 73 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-------r~~l~~~~~~~--~~~ 73 (558)
+++..++|.+..++|.|+++.+|++..+.|++.+.-.+...+..+++|.++||. -+ ++-+.-+.... ++.
T Consensus 268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~i~~~~~ai~ 346 (466)
T KOG2532|consen 268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNTIAFGGPAVF 346 (466)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHhHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999994 43 12222222222 222
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhh
Q 008651 74 LAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSF 153 (558)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~ 153 (558)
.+.+++... .+.+..++...+.-...|...+....-..|..|++ -+..
T Consensus 347 l~~l~~~~~-------------------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~-------a~~l 394 (466)
T KOG2532|consen 347 LLVLAFTSD-------------------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH-------AGFV 394 (466)
T ss_pred HHeeeecCC-------------------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccchH-------HHHH
Confidence 222222210 01112222222222223333333444444545655 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHHHHH
Q 008651 154 FNWFLFSLTVGSIIGVTFIVWISTN---QGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 154 ~~~~~~~~~ig~~~g~~~~~~l~~~---~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+++.+...++..+++|.+.+.+..+ ..|+..|++.+.+.+++-+++.
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhee
Confidence 9999999999999999999999843 4799999999988777765543
No 226
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.7e-05 Score=80.93 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=113.5
Q ss_pred HHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 008651 17 VTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAP 96 (558)
Q Consensus 17 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (558)
...+-++-|++..++.+....-.....+..+.+.++.|| +|||+.++.+..+..+...++.+........
T Consensus 293 st~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~--------- 362 (485)
T KOG0569|consen 293 STSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSF--------- 362 (485)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 345556789999999999999999999999999999999 7999999999999988888887765322000
Q ss_pred CCcCcCCCCCchhHHHHHHHHHHHHHh-ccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 97 NLVNQCDDADGTQVAILFTGLYLFACG-TGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
+++-....+++.++..+. .-+..|...-+.+|.+|++. |..++++-+....+..++-...-..+
T Consensus 363 ---------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 363 ---------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred ---------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111223344433333 22345888999999999998 99999998888877777666666667
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhccc
Q 008651 176 STNQGWDWSFGVCTIAVLFATVFVIMGKSL 205 (558)
Q Consensus 176 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 205 (558)
.+.+|- ..|.+..+...+..+..+...|+
T Consensus 428 ~~~~g~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 428 QNVIGP-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 666664 45555444444444444443333
No 227
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=80.80 Aligned_cols=136 Identities=16% Similarity=0.090 Sum_probs=99.3
Q ss_pred cchhhhhhhhHHHHHHHhhhhc--CC-----------------CchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHH
Q 008651 3 GLESMSFVANMVSLVTYFHGYM--NF-----------------SLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTC 63 (558)
Q Consensus 3 ~~~~~~~y~~~~~l~~yl~~~~--~~-----------------s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l 63 (558)
|-++++||+++.......+... +. +..+-..=..+.++.-+-+.++.+++.|| +||||++
T Consensus 336 fgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver-lGRKkTM 414 (528)
T KOG0253|consen 336 FGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER-LGRKKTM 414 (528)
T ss_pred HhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH-hcchhHH
Confidence 4468999999877665543321 11 11111222334466777888999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 008651 64 VLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERD 143 (558)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~ 143 (558)
..+.+++.+..+.+..... + +....+++++|+.+. +...+++.+.-|.+|...
T Consensus 415 al~l~~f~iflfll~~c~~----------------------r-n~~tvllf~arafis----g~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 415 ALSLILFGIFLFLLTTCKT----------------------R-NAYTVLLFTARAFIS----GAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHHHHHHHHHHHHHHHhcC----------------------c-chhHHHHHHHHHHHh----chheEEEEecCcccchhh
Confidence 9999999988888776531 1 123446677788775 444567888899999987
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 144 PKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 144 ~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
|+.+.|.-..+..+|+++.|.++
T Consensus 468 ------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 468 ------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred ------hhcchhhhhhHHhhhhhhhhHHH
Confidence 99999999999999999999888
No 228
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.21 E-value=4.2e-06 Score=84.29 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=94.7
Q ss_pred CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCc
Q 008651 344 GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPL 423 (558)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (558)
.+.+....++..++.++++|.+.|++||| ..+.++.+..+++.++++...
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-----------pvll~c~~~va~s~ll~~~S~------------------- 119 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-----------PVLLACLIGVALSYLLWALSR------------------- 119 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCch-----------HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 34455566788899999999999999999 558888888888888887642
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 424 PMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 424 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~ 488 (558)
++..++..-++.|+..+...+.. +++.|.++++.|+.+++..++...+|-.+||.+++++..
T Consensus 120 --~F~afv~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 --NFAAFVLARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 55555666899999999877776 899999999999999999999999999999999998863
No 229
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.21 E-value=5.3e-06 Score=89.83 Aligned_cols=106 Identities=10% Similarity=0.077 Sum_probs=84.9
Q ss_pred ChhHHHHHHhhhhhhhhh-hhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHH
Q 008651 351 PLVFMFILVPIYDRVFIP-IARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFW 429 (558)
Q Consensus 351 ~~~~~~i~~~~~~~l~~~-~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (558)
......+..++.+++.|| +||| +.+.+|.+++.++.+.+++.. .....
T Consensus 59 ~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~--------------------~~~~l 107 (489)
T PRK10207 59 FAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL--------------------LKPDL 107 (489)
T ss_pred HHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc--------------------cchhH
Confidence 344556666789999999 8998 668999999999888877542 11222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 430 LGFQYAIFGAADMFTLVGLLDFFYAESSAG--MKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 430 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
+....++.++|.+...|....++.+.+|++ .|+.+.+++.+..++|..+++.+.|++.
T Consensus 108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999899999999877 4578899999999999999999999886
No 230
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.21 E-value=1.5e-05 Score=83.04 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=125.0
Q ss_pred HHHHHhhhhcC---CCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008651 15 SLVTYFHGYMN---FSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPC 91 (558)
Q Consensus 15 ~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (558)
-.+.|.+..++ .++...|.+.+.-.+.-.+.-.+..++-+| +|.|+.++++..+.++=..++++++
T Consensus 242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~---------- 310 (412)
T PF01306_consen 242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT---------- 310 (412)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc----------
Confidence 35667665443 455678888888889999999999999999 8999999999999999988888875
Q ss_pred CCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHHH
Q 008651 92 VGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNW-FLFSLTVGSIIGVT 170 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~g~~ 170 (558)
+.+.+.+.+.+.++-.+....++..++++.+|++. .++...+ +.....+|.++.+.
T Consensus 311 -----------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~s~ 367 (412)
T PF01306_consen 311 -----------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIILSP 367 (412)
T ss_dssp -----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999999875 5677777 45677899999999
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHHhc
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVFVIMGK 203 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 203 (558)
++|.+.|+.|++..|++-+.+.+...++..+..
T Consensus 368 ~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 368 LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 999999999999999887766555544444433
No 231
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.17 E-value=8.7e-06 Score=87.44 Aligned_cols=109 Identities=8% Similarity=0.044 Sum_probs=79.9
Q ss_pred CCcChhHHHHHHhhhhhhhhhh-hhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccch
Q 008651 348 PVIPLVFMFILVPIYDRVFIPI-ARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMS 426 (558)
Q Consensus 348 ~~~~~~~~~i~~~~~~~l~~~~-~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (558)
.........+..++.+++.||+ +|| +.+.+|.++++++.++..... .+
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------~~ 99 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------IH 99 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------cc
Confidence 3333455566777889999998 888 557888888888876554321 11
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 427 VFWLGFQYAIFGAADMFTLVGLLDFFYAESSAG--MKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 427 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.........+..+|.+...+...+++.+.+|++ .|.++.++.....++|+.+++.+.+++.
T Consensus 100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444555677776677778899999975 7999999999999999999999999875
No 232
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.14 E-value=7e-05 Score=78.90 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=90.1
Q ss_pred ChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHH
Q 008651 351 PLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWL 430 (558)
Q Consensus 351 ~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (558)
......+.....+.+.||++.| +.+..+++..++..++.++.. +...+
T Consensus 71 F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~---------------------Sl~~L 118 (511)
T TIGR00806 71 LPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT---------------------SVWHM 118 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Confidence 3455577778889999999988 568888888888888877753 67788
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 431 GFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 431 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.+.-+++|++++... ....++++.+|++.|++++|+++....+|.++++.+.+++.
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999 88899999999999999999999999999999999998843
No 233
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.11 E-value=1.3e-05 Score=89.46 Aligned_cols=174 Identities=9% Similarity=-0.001 Sum_probs=115.0
Q ss_pred CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--hhh----------h
Q 008651 344 GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKR--KSV----------A 411 (558)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~--~~~----------~ 411 (558)
.+++...+.+...+..++.+++.||.+|| +.+.+|.++++++.+++++..-.. +.. .
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHRP-----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCcc-----------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 45566677788888889999999998887 458889999999998887653100 000 0
Q ss_pred -hcccccCCC---------------CCc--cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 008651 412 -VEHNMVDSI---------------EPL--PMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIA 473 (558)
Q Consensus 412 -~~~~~~~~~---------------~~~--~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ 473 (558)
......... ... ...+..+++..++.|+|.+...+....++.|.+|++.|+.+.|+.+....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000000000 000 12345566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCccc--CCC--C--Cc----chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 474 FGYFLSSLVVEIVNKVSGGWLA--SNN--L--NR----DKLNYFYWLLAGISVLNFGFYLACASW 528 (558)
Q Consensus 474 lg~~lg~~l~~~i~~~~~~~~~--~~~--~--~~----~~~~~~f~~~~~~~~v~~~~~~~~~~~ 528 (558)
+|..+|+.+++.+.+...+|-. .+. + .+ +.|...|++.+++.++.++.++++.++
T Consensus 219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999887643212210 000 0 11 123334666666666666555554433
No 234
>PRK11462 putative transporter; Provisional
Probab=98.10 E-value=5.7e-05 Score=81.23 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=86.6
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCc
Q 008651 28 LTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADG 107 (558)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (558)
+...+++.+.+.++..++.+++++++|| +|+|+++..+..+..+...+..+.+ .
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~-------------------------~ 315 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVP-------------------------M 315 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc-------------------------h
Confidence 3445567778888889999999999999 7999988766555444333333321 0
Q ss_pred hhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhccccch
Q 008651 108 TQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKF-SSFFNWFLFSLTVGSIIGVTFIVWISTNQGW 181 (558)
Q Consensus 108 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r-~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw 181 (558)
.+...+++..++.|++.+...+...++++|..+.++-+...|| +..++...+...+|..+|+.++|++.+..|+
T Consensus 316 ~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 316 QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1222334455667888877778788899999775543333333 3335667788899999999988887654444
No 235
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.07 E-value=0.0001 Score=75.74 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=132.7
Q ss_pred hhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 7 MSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQL 86 (558)
Q Consensus 7 ~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (558)
++|+.-=..+-+|--+.||+|..|..-+...+..+..++-...|++..|..++++.-.++..+.+++..+..++...+
T Consensus 222 ~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-- 299 (403)
T PF03209_consen 222 LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-- 299 (403)
T ss_pred HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 344444445555666679999999999999999999999999999998658999998899988888888888876422
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHH
Q 008651 87 RPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSI 166 (558)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 166 (558)
+.+.+..+.+++|+|.|.......+...|..++++ -+.+++.+.....++..
T Consensus 300 ----------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~G 351 (403)
T PF03209_consen 300 ----------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARG 351 (403)
T ss_pred ----------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999998876 78999999999999999
Q ss_pred HHHHHHHHhccc----------cchhhHHHHHHHHHHHHHHHH
Q 008651 167 IGVTFIVWISTN----------QGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 167 ~g~~~~~~l~~~----------~gw~~~f~i~~~~~~~~~~~~ 199 (558)
+|..++|.+.|. .+|..+|.+-++..++++.+.
T Consensus 352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 998888877542 356777777777666665543
No 236
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.07 E-value=6.4e-05 Score=81.72 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHhhHH----HHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 31 SATTLTNFTGTAFLLALFG----GFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
.++..+...+...++.++. +++.|| ++..+.+.+|+++..++.+.++++...+. +.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~------------------~~~ 378 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFAN------------------DAG 378 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCC
Confidence 5566666666666666666 667777 57778899999999999999887653110 011
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc---------
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIST--------- 177 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~--------- 177 (558)
..+.+.+++..+++++|.+...|...+++.+..|++. |++.+|.++....+|+.++..+.+....
T Consensus 379 ~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~ 452 (500)
T PRK09584 379 IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLM 452 (500)
T ss_pred ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchh
Confidence 2356678899999999999999999999999999987 9999999998888888888777653321
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 178 -NQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 178 -~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
..++...|...++..++..+++++..+
T Consensus 453 ~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 453 SLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567777666554433333333333
No 237
>PTZ00207 hypothetical protein; Provisional
Probab=98.06 E-value=9.9e-05 Score=80.86 Aligned_cols=131 Identities=9% Similarity=0.070 Sum_probs=95.2
Q ss_pred HHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHH
Q 008651 358 LVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIF 437 (558)
Q Consensus 358 ~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 437 (558)
+.++.+++.||+++| +.+.+|.++.+++.++.++... + ....+.+.+.+..++.
T Consensus 77 ~~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 77 FLLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLM 130 (591)
T ss_pred HHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHH
Confidence 444679999999998 6688999999999988876420 0 0013666777788899
Q ss_pred HHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHH
Q 008651 438 GAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVL 517 (558)
Q Consensus 438 g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v 517 (558)
|+|.+...+.......+.+| +.||.++|+......+|+.+.+.+...+.. .++..+|++++++.++
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------------~~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------------DNTSAYFFFLMSFALV 196 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHH
Confidence 99999888887788888887 678999999999999999865544443321 1244567778887777
Q ss_pred HHHHHHhhhcc
Q 008651 518 NFGFYLACASW 528 (558)
Q Consensus 518 ~~~~~~~~~~~ 528 (558)
..++.+.+.+.
T Consensus 197 v~ll~~~~vr~ 207 (591)
T PTZ00207 197 VGILAIVFMRL 207 (591)
T ss_pred HHHHHHhheeC
Confidence 77766655443
No 238
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.05 E-value=4.5e-05 Score=80.38 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=111.6
Q ss_pred HHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 008651 17 VTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAP 96 (558)
Q Consensus 17 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (558)
..|.+..+|.++....+.......+..++.++..++.+| +|+|+++.++.++.+++.++..+..
T Consensus 260 ~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~--------------- 323 (467)
T COG2211 260 VYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP--------------- 323 (467)
T ss_pred heeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 445555678778888888888888888889999999999 8999999999999999999998874
Q ss_pred CCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 97 NLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKF-SSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r-~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
..+...+++..++.++|.+...+..+++++|..+-++-+..+|| |-.++......-+|.+++..+.|++
T Consensus 324 ----------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 324 ----------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred ----------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13677888899999999999999999999999876665444433 4556667777788888888777776
Q ss_pred ccccch
Q 008651 176 STNQGW 181 (558)
Q Consensus 176 ~~~~gw 181 (558)
....|+
T Consensus 394 L~~~Gy 399 (467)
T COG2211 394 LGAIGY 399 (467)
T ss_pred HHHcCC
Confidence 544443
No 239
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.96 E-value=4.8e-05 Score=81.99 Aligned_cols=134 Identities=10% Similarity=-0.147 Sum_probs=108.0
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh-hccccCCCCCCCCCCCCcC
Q 008651 22 GYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQA-HAHQLRPKPCVGVAPNLVN 100 (558)
Q Consensus 22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (558)
+.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++..++........ ... .+
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~--------------~~ 345 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWN--------------LA 345 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccc--------------cc
Confidence 4689999999999999999999999999999999 7999999999988888776643211 000 00
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008651 101 QCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQG 180 (558)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g 180 (558)
.+ ..+.+.+...-++.+++.+........++.+..|++. ++..++++....|+|..+++.+++.+.++.|
T Consensus 346 ~g----i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 346 FG----ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred cC----CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 0022344555678888888888889999999999997 8999999999999999999999999988777
No 240
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.95 E-value=8.1e-05 Score=79.73 Aligned_cols=169 Identities=9% Similarity=0.037 Sum_probs=101.6
Q ss_pred CCCCCcChhHHHHHHhhhhhhhhh----hhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC
Q 008651 345 PSLPVIPLVFMFILVPIYDRVFIP----IARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSI 420 (558)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~~~l~~~----~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 420 (558)
+.+....++..++..|+.|++.|| +|||+ ..+..|.....++++++.+...... .+.++
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr----------p~il~g~~~~~~~l~ll~~~~~~~~-------~~~~~ 104 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR----------PFIAAGAALVAFAVILIGFAADIGH-------LFGDN 104 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH----------HHHHHHHHHHHHHHHHHHhCchhhh-------hcccc
Confidence 344556678889999999999995 77762 2234456666666666655321100 00000
Q ss_pred ---CCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCcc
Q 008651 421 ---EPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMK--SLSTAISWCSIAFGYFLSSLVVEIVNKVS-GGWL 494 (558)
Q Consensus 421 ---~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r--g~~~gi~~~~~~lg~~lg~~l~~~i~~~~-~~~~ 494 (558)
.......+..+..+.+..++.....++..+++.|.+|++.| +.+.++.+...++|+.++..+.++..... -++.
T Consensus 105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~ 184 (477)
T TIGR01301 105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT 184 (477)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 00111123334445556667777777788999999998865 57888888899999999998887642111 0111
Q ss_pred cCCCCC--cchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008651 495 ASNNLN--RDKLNYFYWLLAGISVLNFGFYLACASWYR 530 (558)
Q Consensus 495 ~~~~~~--~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 530 (558)
..+..+ -.+....|++.+++.+++.+...+..+|.+
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 100000 023455677777777777777777666654
No 241
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.95 E-value=0.00011 Score=80.27 Aligned_cols=138 Identities=11% Similarity=0.097 Sum_probs=97.1
Q ss_pred CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCc
Q 008651 344 GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPL 423 (558)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (558)
..|+...+.+...+..|+.+++.|.+||| +.+..|.++..+++++.+..+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 35666777788888999999999999999 558899999999998887543
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcch
Q 008651 424 PMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDK 503 (558)
Q Consensus 424 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~ 503 (558)
+....+....+.|+|.+...... ..+.|..|.+.|+.+.++...........++.+...+. .+..
T Consensus 130 --~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~------------~~~~ 194 (599)
T PF06609_consen 130 --NMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA------------AHSG 194 (599)
T ss_pred --cHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc------------cCCC
Confidence 55566778888899877766543 55789999999988777655443333334444433321 1234
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 008651 504 LNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 504 ~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
|.|.|++.+++..++.+..+++.
T Consensus 195 WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 195 WRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh
Confidence 66767777777777766555444
No 242
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.92 E-value=0.0031 Score=65.61 Aligned_cols=129 Identities=12% Similarity=0.161 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHH
Q 008651 32 ATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVA 111 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (558)
+.++-+-.+-..+.-+..-++.+| +.-+.-+....++..+|.++.+++. +.+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~---------------------------~v~ 113 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSP---------------------------SVW 113 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeecc---------------------------chh
Confidence 345555566777777778888998 5644445555667778888887753 556
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccch--hhHHHHHH
Q 008651 112 ILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGW--DWSFGVCT 189 (558)
Q Consensus 112 ~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw--~~~f~i~~ 189 (558)
.=+++-.+.+++.|.-....-++.+ .+++ ...+-+..+...++++|+..=-.+.. .|+ |..+.+..
T Consensus 114 ~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----------~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~ 181 (402)
T PF02487_consen 114 VRLLGVVLASLSSGLGEVTFLSLTH-FYGK----------SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIML 181 (402)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----------cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHH
Confidence 6778888999998888887777755 3342 23445555666677777655444444 444 66666655
Q ss_pred HHHHHHHHHHH
Q 008651 190 IAVLFATVFVI 200 (558)
Q Consensus 190 ~~~~~~~~~~~ 200 (558)
++-++-.+.++
T Consensus 182 ~lp~~~~~~~f 192 (402)
T PF02487_consen 182 VLPAIFLLSYF 192 (402)
T ss_pred HHHHHHHHHHH
Confidence 44333333333
No 243
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.91 E-value=0.0089 Score=63.91 Aligned_cols=135 Identities=13% Similarity=-0.064 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHHHHHH-hhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC------cCc
Q 008651 29 TKSATTLTNFTGTAFLL-ALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNL------VNQ 101 (558)
Q Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 101 (558)
....++-+...+...+. .++-+++++| ++|++.+-+....+..-.++.++.-. | ..|...|+. ...
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~-p-----~~~~~~p~~~~~~~~~~~ 115 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIY-P-----LSDLLHPTALADKLLSLL 115 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHh-c-----chhhcCCcHHHHHHHhhc
Confidence 56777777665655555 8889999999 79999998888777777777776632 1 001100100 000
Q ss_pred CCCCCch----hHHHHHHHHHHHHHhcccccc-chhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008651 102 CDDADGT----QVAILFTGLYLFACGTGGVKA-ALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 102 ~~~~~~~----~~~~~~~~~~l~g~g~g~~~~-~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 176 (558)
+.+.... +.|...+..+...+-...... ..+++.+|.++.+| -.|.+++++.+.|+|.++|+.+..++.
T Consensus 116 ~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 116 PPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred chhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 111111222223333334443 78899999999887 789999999999999999999988876
No 244
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.84 E-value=0.00012 Score=79.81 Aligned_cols=139 Identities=14% Similarity=-0.001 Sum_probs=108.1
Q ss_pred CCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCcc
Q 008651 345 PSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLP 424 (558)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (558)
+++.....++..++.++.+++.|++||| ..+..+.++..++.++.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a~-------------------- 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALAP-------------------- 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHhh--------------------
Confidence 4566667788899999999999999999 558888888888888888753
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchh
Q 008651 425 MSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKL 504 (558)
Q Consensus 425 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~ 504 (558)
+..+++..-++.|+|.++.......|..|.+|++.||...++.++...+|..++ .+.+... .+.. ..|
T Consensus 141 -~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~---------~~~~-~~W 208 (513)
T KOG0254|consen 141 -SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT---------SKVY-AGW 208 (513)
T ss_pred -hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh---------ccCC-ccH
Confidence 788899999999999999998888999999999999999999999888887777 4444332 1111 245
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 008651 505 NYFYWLLAGISVLNFGFYLACAS 527 (558)
Q Consensus 505 ~~~f~~~~~~~~v~~~~~~~~~~ 527 (558)
...+++..+.+++..+. .++.+
T Consensus 209 r~~~~~~~i~~~~~~~~-~~~~p 230 (513)
T KOG0254|consen 209 RIPLGLALIPAVILALG-MLFLP 230 (513)
T ss_pred HHHHHHHHHHHHHHHHH-HHhCC
Confidence 55566666666666665 44433
No 245
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.79 E-value=0.00013 Score=79.81 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=104.8
Q ss_pred CCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccch
Q 008651 347 LPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMS 426 (558)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (558)
...+..++.+++..+.+.+.|++||| ..+..++++..++-+..++. .+
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~a---------------------~~ 170 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAFA---------------------PN 170 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHHh---------------------Cc
Confidence 44555677788888999999999999 55788888888877776665 37
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHH
Q 008651 427 VFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNY 506 (558)
Q Consensus 427 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~ 506 (558)
.+..++.-++.|++..........+..|..+++.|+.++.+ ......++.+++...+++.. +|.+
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------------~Wr~ 235 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------------DWRW 235 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------------hHHH
Confidence 78888899999999999999999999999999999999999 77777888888888887752 4666
Q ss_pred HHHHHHHHHHHHHHH
Q 008651 507 FYWLLAGISVLNFGF 521 (558)
Q Consensus 507 ~f~~~~~~~~v~~~~ 521 (558)
.+|+....+.+..+.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766555
No 246
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.75 E-value=0.00025 Score=75.03 Aligned_cols=158 Identities=10% Similarity=0.025 Sum_probs=108.2
Q ss_pred CCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccc
Q 008651 346 SLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPM 425 (558)
Q Consensus 346 ~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (558)
+......++.+++.+..+.+..|.+. ..+.+..|.+++.++.+++...+.. +.
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~----------~k~Pli~s~ii~~~g~llY~~l~~~-----------------~~ 127 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGS----------VKKPLIVSFLIAIIGNLLYLALAYV-----------------PN 127 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCC----------cccCHHHHHHHHHHHHHHHHHHHhc-----------------cc
Confidence 33444567778888888887765543 1244899999999999999655421 23
Q ss_pred -hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCcccCCCCCcch
Q 008651 426 -SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVS-GGWLASNNLNRDK 503 (558)
Q Consensus 426 -~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~-~~~~~~~~~~~~~ 503 (558)
..++++...++.|+|.+-.... =.|+.+..-.+.|.++++..+..+.+|..+|+.+...+.... .|+.-..++.-+.
T Consensus 128 ~~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~ 206 (488)
T KOG2325|consen 128 GVKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNM 206 (488)
T ss_pred chHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEe
Confidence 6788888999999997774444 488888888888888888888877888888888777665433 2332101122233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccch
Q 008651 504 LNYFYWLLAGISVLNFGFYLACASWYRY 531 (558)
Q Consensus 504 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 531 (558)
+..--|+.+.++++..++..++.++...
T Consensus 207 YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 207 YTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 4444577888888888877766665443
No 247
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.74 E-value=0.00011 Score=77.46 Aligned_cols=150 Identities=11% Similarity=-0.031 Sum_probs=122.3
Q ss_pred hhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCc
Q 008651 22 GYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQ 101 (558)
Q Consensus 22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (558)
++.+-++.-.|.....-..+-.+.-++.+++-.+ +|+-+++.+++.+..+=++......
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~-------------------- 457 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ-------------------- 457 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc--------------------
Confidence 4556555555644444455666777888999999 7999999999988888877777653
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhccccc
Q 008651 102 CDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLF-SLTVGSIIGVTFIVWISTNQG 180 (558)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~~g~~~~~~l~~~~g 180 (558)
++|+.+..-+++|+..+.+++++.+++.+..|++- |..+.++... .-.+|-.+|.+++|.+.+.+|
T Consensus 458 -------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 458 -------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred -------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 78899999999999999999999999999999997 8888888554 448898999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc
Q 008651 181 WDWSFGVCTIAVLFATVFVIMGKSL 205 (558)
Q Consensus 181 w~~~f~i~~~~~~~~~~~~~~~~~~ 205 (558)
-+..|.+.++..++.++.+......
T Consensus 525 ~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 525 ARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999888877777666554433
No 248
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00037 Score=71.25 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=108.1
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (558)
.++++.|+.+..|++..+++..++.|..+.+++..++-++-.| +...|.+.+..++-.+-.+..++..
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~----------- 323 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG----------- 323 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 4678999998899999999999999999999999999999999 7999988877655444444444432
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
+ ..-+.+.++.|...+.++|.+.++..+..|++. +.+.. .-.+.-+|+++-|.+-
T Consensus 324 ----------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~---~l~maivGGAiiP~l~ 378 (422)
T COG0738 324 ----------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG---LLVMAIVGGAIIPPLQ 378 (422)
T ss_pred ----------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce---eeeeheecchHHHHHH
Confidence 2 234456778899999999999999999999553 23332 2334568888999999
Q ss_pred HHhccccchhhHHH
Q 008651 173 VWISTNQGWDWSFG 186 (558)
Q Consensus 173 ~~l~~~~gw~~~f~ 186 (558)
|++.|..|-...+.
T Consensus 379 G~i~d~~g~~~~~~ 392 (422)
T COG0738 379 GVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHhhhhHHHHH
Confidence 99999999887776
No 249
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.67 E-value=0.00013 Score=57.48 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=48.9
Q ss_pred hHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHH
Q 008651 12 NMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIE 70 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~ 70 (558)
..++++.|++ +.|+|..+.|.+.++-.+...+++++.|+++|| +||+|.++....++
T Consensus 19 ~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 19 LYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 4456777775 589999999999999999999999999999999 69998887766543
No 250
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00036 Score=75.01 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhH
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLN 505 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~ 505 (558)
+.+.++...+++|+.|+...|....+...-+.++.||+-+|+++..+.+|+.+|+.+...+.+..+.+ ...+|.
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~------~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG------GLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC------CcCCce
Confidence 56677788999999999999999999999999999999999999999999999999987654322111 123467
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccch
Q 008651 506 YFYWLLAGISVLNFGFYLACASWYRY 531 (558)
Q Consensus 506 ~~f~~~~~~~~v~~~~~~~~~~~~~~ 531 (558)
+.|.+-++++++..++.++..+....
T Consensus 207 ~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred eehhHHHHHHHHHHheEEEEecCChh
Confidence 78999999999998887776655443
No 251
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.51 E-value=0.068 Score=56.56 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 425 MSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLV 482 (558)
Q Consensus 425 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l 482 (558)
.+...++...++--+|--.......-+..|.+|++.||...|+-+..+++...+.-.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666555556667788999999999999999988888777766544
No 252
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.048 Score=55.55 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 428 FWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 428 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
...+..+.+.+......+...+++-.+++|+...|+.|.+.|+..++|+.--..+...+.
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~ 429 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLA 429 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhc
Confidence 334446788888888888999999999999999999999999999998877666666554
No 253
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.39 E-value=0.0012 Score=52.64 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=64.0
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~ 81 (558)
+.||+| ..+-+.++++.++|.++.+++.+...+++.++.+...++.++ ..+++.+..++++..+..+.+++..
T Consensus 6 igRFay----TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 6 IGRFAY----TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hHHHHH----HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666 455567789999999999999999999999999999999998 6889999999999999999998864
No 254
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.36 E-value=0.0024 Score=57.60 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHH
Q 008651 32 ATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVA 111 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (558)
..-.++......+..++.+.+.++ +|.|+.+++|.+.+.+-.+.... | +.+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~------------------------~~~ 90 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P------------------------NSY 90 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h------------------------hHH
Confidence 334445566677788888899999 89999999998877755444332 2 567
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 112 ILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 112 ~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
.++++-++.|+|.+..+++...++.+..++++ |++..+++....+.+.++|..+.-.+
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999877665 88888888888888887776555444
No 255
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.27 E-value=3.7e-06 Score=89.95 Aligned_cols=162 Identities=16% Similarity=0.026 Sum_probs=99.5
Q ss_pred hHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HhhhccccCCCC
Q 008651 12 NMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILA-IQAHAHQLRPKP 90 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (558)
...+...++.+..+.++. -.......+...++.+++.++.|| +|||+.++.+.++.+++.+.++ .....+ .
T Consensus 271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~--~--- 342 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGV--S--- 342 (451)
T ss_pred cccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccccccccccccc--c---
Confidence 333444555566777766 222223345566777788899999 7999999999988887777665 111000 0
Q ss_pred CCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 91 CVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
.....+...+....+.......+..+....+.+|.+|.+. |+++.++.+....+++++++.
T Consensus 343 -------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~ 403 (451)
T PF00083_consen 343 -------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPF 403 (451)
T ss_pred -------------cccccccccceeeeeccccccccccccccccccccccccc------ccccccccccccccccccccc
Confidence 0000011111111111222222445667788999999997 999999999999999999988
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 171 FIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 171 ~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+...+.+..+-...|.+.+...++..++..
T Consensus 404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~ 433 (451)
T PF00083_consen 404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVY 433 (451)
T ss_pred ccccccccccccccchhhHHHHHHHHhhee
Confidence 888888776634445544444444444433
No 256
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.0011 Score=68.81 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=108.1
Q ss_pred HHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcc---cCchHHHHHHHH-HHHHHHHHHHHhhhccccCC
Q 008651 13 MVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTY---LSRFKTCVLFGC-IELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 13 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 88 (558)
..++++|+ +.+|+...-.+.+-.+--+...+.+|+-|..+||. |||||.++.... ..+++.+++..+.+.-.+
T Consensus 52 lsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~-- 128 (498)
T KOG0637|consen 52 LSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLL-- 128 (498)
T ss_pred hccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHH--
Confidence 34677787 58899888888888888899999999999999984 798888766554 456777777776532111
Q ss_pred CCCCCCCCCCcCcCCC----CCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDD----ADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
.|++ ........++++.-+.=+..-..+..+-++++|...+++. +.++.+++.....+|
T Consensus 129 ------------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 129 ------------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANSVFSFFMAVG 191 (498)
T ss_pred ------------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccchhHHHHHHhc
Confidence 1222 2335677788888888888888889999999999876651 233999999999999
Q ss_pred HHHHHHHHHHh
Q 008651 165 SIIGVTFIVWI 175 (558)
Q Consensus 165 ~~~g~~~~~~l 175 (558)
..+|...+++.
T Consensus 192 nvLGY~~g~y~ 202 (498)
T KOG0637|consen 192 NVLGYALGSYL 202 (498)
T ss_pred ceeeeeccccc
Confidence 99998887743
No 257
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.78 E-value=0.02 Score=55.96 Aligned_cols=103 Identities=8% Similarity=-0.022 Sum_probs=73.4
Q ss_pred HhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHH
Q 008651 359 VPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFG 438 (558)
Q Consensus 359 ~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 438 (558)
+.+.|.+.|+++.+ ..+.+|.+...+++..+...... ..++.+.|.+....++.+
T Consensus 53 G~~~G~l~d~~gp~-----------~~l~iG~~~~~~GY~~~~l~~~~--------------~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 53 GILAGLLYDRFGPW-----------VVLLIGAVLGFVGYGLLWLAVSG--------------RIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred cHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHHHHhC--------------ccCccchHHHHHHHHHHc
Confidence 45667888888776 45788999888888777654311 012245666666666777
Q ss_pred HHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 439 AADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 439 ~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.+..........-..+.+|. .||++.|+......+++.+-+.+...+.
T Consensus 108 ~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 108 NSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred ccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 77766666665666688885 6999999999999998888777766554
No 258
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0034 Score=65.33 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=81.2
Q ss_pred CCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccch-
Q 008651 348 PVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMS- 426 (558)
Q Consensus 348 ~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 426 (558)
.....++.+++..+.|++.|++||| +.....++++.++.+..+... ..+++.+
T Consensus 90 n~~A~vGti~GQl~FG~lgD~~GRK-----------~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~ 143 (538)
T KOG0252|consen 90 NAAALVGTIFGQLFFGWLGDKFGRK-----------KVYGKELIIMIICSALSGLSV---------------GTTSPLGV 143 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcch-----------hhhhHHHHHHHHHHHHhccCC---------------CCCCCcch
Confidence 3334566788999999999999999 456777777777776444321 1122323
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 427 VFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVV 483 (558)
Q Consensus 427 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~ 483 (558)
.+|+...-+++|+|.+.-+|...+...|.+.++.||.-.+.....+.+|-..|..+.
T Consensus 144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred hhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 456666779999999999999999999999999999999987777766655554443
No 259
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.45 E-value=0.025 Score=60.44 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=88.4
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHH
Q 008651 352 LVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLG 431 (558)
Q Consensus 352 ~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 431 (558)
.+..++.++..|.+.|+++||.. +.+-..+.++-.+ +..+. . +|.+
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~--------L~~~~~~~~l~~~---~~~~~----------------------~-~~~~ 117 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVV--------LLLPLFGTILPAL---CLLFQ----------------------G-YWFF 117 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhh--------HHHHHHHHHHhHH---HHHHH----------------------H-HHHh
Confidence 56678899999999999999932 2222333333332 22221 2 3433
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHH
Q 008651 432 FQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLL 511 (558)
Q Consensus 432 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~ 511 (558)
+..-+ .-+.+......++++++....+.|....|+.+.+...+..+++.+.+...+ + .+....+++.
T Consensus 118 ~~~~l-~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~----~--------~~~a~~f~ia 184 (463)
T KOG2816|consen 118 LLLGL-SGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK----F--------LGIALVFLIA 184 (463)
T ss_pred hhccc-ccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----h--------cCchHHHHHH
Confidence 32112 223444556677899999999999999999999999999999999887752 1 2234456777
Q ss_pred HHHHHHHHHHHHhhhcccchh
Q 008651 512 AGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 512 ~~~~~v~~~~~~~~~~~~~~~ 532 (558)
++..++..+..+++.++...+
T Consensus 185 ~~~~~~~~~y~~~~l~Esl~~ 205 (463)
T KOG2816|consen 185 AASGILSLLYMLLFLPESLQE 205 (463)
T ss_pred HHHHHHHHHHHhhccccccCc
Confidence 777777777666666665443
No 260
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.26 E-value=0.00069 Score=74.01 Aligned_cols=178 Identities=10% Similarity=-0.002 Sum_probs=3.0
Q ss_pred CCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH----HHHhhhhh-------
Q 008651 344 GPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVE----TKRKSVAV------- 412 (558)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~----~~~~~~~~------- 412 (558)
.+.+...+-+..++...++.++. +|. ++.+.+.+|.++++++.+++++-. .+......
T Consensus 40 ~G~i~s~~di~~~~~~~~vsy~g----~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~ 108 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVSYFG----GRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS 108 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence 34445555555555555555443 331 233668899999999988877542 11111000
Q ss_pred -ccccc-----------------CCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 008651 413 -EHNMV-----------------DSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAF 474 (558)
Q Consensus 413 -~~~~~-----------------~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l 474 (558)
..... .+++......+++++..++.|+|.....+...+|+-|.++++.-+.+.|+......+
T Consensus 109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp -------------------------------------------SSS----------------------------------
T ss_pred cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 00111 011223334566778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcccCC----C--CCcchhHH----HHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 475 GYFLSSLVVEIVNKVSGGWLASN----N--LNRDKLNY----FYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 475 g~~lg~~l~~~i~~~~~~~~~~~----~--~~~~~~~~----~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
|-.+|-.+++...+.--+|-..+ + .++..|.. -|.+.+.+.++.++.++.+.++.++.
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 99888888776654210111000 0 11122222 24566667777777666666665544
No 261
>PRK03612 spermidine synthase; Provisional
Probab=96.19 E-value=0.13 Score=56.10 Aligned_cols=155 Identities=17% Similarity=0.076 Sum_probs=88.7
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHH---HHHHHHhhhccccCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLG---LAILAIQAHAHQLRPKPCV 92 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 92 (558)
..-.+...+|-+....+.++++|..+..++..++|+++++ .-|+ ...+-+.+-.++ ..++.... +. .
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~-~~~~e~~i~l~~~~~~~ll~~~~--~~-~----- 106 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAG-FVAVELLLALLGGLSALILYAAF--AF-Q----- 106 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHH-HHHHHHHHHHHHHHHHHHHHHHH--HH-H-----
Confidence 3444555678889999999999999999999999998755 2222 222111111111 11111110 00 0
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
......++...++.++-.|+..|....+..+...++ -++..|-.|....+|+++|..+.
T Consensus 107 --------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-------~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 107 --------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQH-------LGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------hhhhhhhhHhHHhHHHHHHHHHH
Confidence 001112233344566777777777666665432211 45677888889999999999888
Q ss_pred HHhcc-ccchh-hHHHHHHHHHHHHHHHHHH
Q 008651 173 VWIST-NQGWD-WSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 173 ~~l~~-~~gw~-~~f~i~~~~~~~~~~~~~~ 201 (558)
+++.- ..|-. ..+.++.+..+++++.+..
T Consensus 166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 166 PFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 77643 56744 4444444445555444433
No 262
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.018 Score=63.95 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHhhhhh-------c-----ccc-------cC---CC-----CCccchhHHHH
Q 008651 383 LQRIGVGLVLSAVSMAVAAVVET----KRKSVAV-------E-----HNM-------VD---SI-----EPLPMSVFWLG 431 (558)
Q Consensus 383 ~~~~~~g~~l~~i~~l~~~~~~~----~~~~~~~-------~-----~~~-------~~---~~-----~~~~~~~~~~i 431 (558)
.+.+.+|.++++++.++.++-.- +.++... . .++ .. ++ ......+..++
T Consensus 162 Pr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff 241 (735)
T KOG3626|consen 162 PRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFF 241 (735)
T ss_pred cceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHH
Confidence 36689999999999988876521 1111111 0 000 00 11 12222444566
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc-ccCC--CCCcchhHH--
Q 008651 432 FQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGW-LASN--NLNRDKLNY-- 506 (558)
Q Consensus 432 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~-~~~~--~~~~~~~~~-- 506 (558)
+..++.|+|....++....|+-|-+.++.-..+.|+......+|-++|-.++++..+.-.++ ..+. +.++..|..
T Consensus 242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAW 321 (735)
T KOG3626|consen 242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAW 321 (735)
T ss_pred HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHH
Confidence 78899999999999999999999999999999999999999999999988888876432111 1101 112222322
Q ss_pred --HHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 507 --FYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 507 --~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
-|++.+++.++..+.++++.++.++.
T Consensus 322 WlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 322 WLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 35677788888888888877666543
No 263
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=95.75 E-value=0.03 Score=56.32 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCC-CCCcchh
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASN-NLNRDKL 504 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~-~~~~~~~ 504 (558)
+.|+.-..++++....++..+....-+++....+.-|...|++.+..-+-. +.+.-++.+.. ++.-+ .....-+
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQ---silT~iVvd~~--g~~L~ir~Q~~~Y 399 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQ---SILTLIVVDDR--GLGLDIRTQFVVY 399 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHH---HhheEEEEccc--ccCCCcceeEEEE
Confidence 677778888998888888777766666666777778888888766443333 33333333322 11101 0111224
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008651 505 NYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 505 ~~~f~~~~~~~~v~~~~~~~~ 525 (558)
..||..++++.++.....+..
T Consensus 400 ~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 400 SSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 457888898888886654443
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.35 E-value=0.14 Score=53.25 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchh---h
Q 008651 384 QRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAG---M 460 (558)
Q Consensus 384 ~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~ 460 (558)
+.+..|.++..++.+++..... ......+.+...+.+.+++.++|.++.=|+...+..++++++ .
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~------------~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAI------------PPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHT------------SSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred HhhhHHHHHHHHHHHHhHHHHh------------cchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 4577888888888888655420 000011234466777888999999999999999999999876 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 461 KSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 461 rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
|......+....++|..++..+.+++.+ + .++...|++.++..+++.+.++...++++.+
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~---------~---~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQ---------N---YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHH---------C---S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhcc---------c---cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 5666677788888999999888887752 1 2345567777777777777666655555444
No 265
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=95.33 E-value=2.7 Score=45.40 Aligned_cols=138 Identities=13% Similarity=-0.010 Sum_probs=82.1
Q ss_pred CchhhhHHHHHHHH-HHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC------c
Q 008651 27 SLTKSATTLTNFTG-TAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNL------V 99 (558)
Q Consensus 27 s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 99 (558)
++.....+-....+ +..+...+-.+++|| ++|.+++-+....+..-+++.++.-. | -++...|+. .
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vly-P-----~~~~lhp~~~~~~~~~ 128 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLY-P-----NRDILHPDAFADKLLA 128 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHh-h-----chhhcCCCHHHHHhhh
Confidence 33444444443333 556667788999999 79999998888888877777777542 2 111111110 0
Q ss_pred CcCCCCCc----hhHHHHHHHHHHHHHhcccccc-chhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 100 NQCDDADG----TQVAILFTGLYLFACGTGGVKA-ALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW 174 (558)
Q Consensus 100 ~~~~~~~~----~~~~~~~~~~~l~g~g~g~~~~-~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 174 (558)
..+..-.+ .+.|...+.-+..-+=...... ..+++..|.++.+| -.|.++++..+.|+|.+++..+..+
T Consensus 129 ~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 129 ILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0111121222222222223222 46889999998887 6899999999999999999888888
Q ss_pred hcc
Q 008651 175 IST 177 (558)
Q Consensus 175 l~~ 177 (558)
+.+
T Consensus 203 ~~~ 205 (491)
T PF03219_consen 203 FSS 205 (491)
T ss_pred HHH
Confidence 776
No 266
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.05 E-value=0.63 Score=42.00 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=69.5
Q ss_pred hhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHH
Q 008651 360 PIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGA 439 (558)
Q Consensus 360 ~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~ 439 (558)
.+...+.++++.| +.+.+|.++..+-.+.... .+.+.+++.-++.|+
T Consensus 55 l~~P~iv~~lg~K-----------~sm~lg~~~y~~y~~~~~~----------------------~~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 55 LFAPSIVNKLGPK-----------WSMILGSLGYAIYIASFFY----------------------PNSYTLYPASALLGF 101 (156)
T ss_pred HhHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHh----------------------hhHHHHHHHHHHHhh
Confidence 3444456666777 5577777776644333221 245677888899999
Q ss_pred HHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008651 440 ADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIV 486 (558)
Q Consensus 440 g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i 486 (558)
+.+..-+..-.++.+..+++.+++..++++.....+..+|..+.-.+
T Consensus 102 ~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 102 GAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877778999999999999999999998888888887665444
No 267
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.03 E-value=0.25 Score=52.39 Aligned_cols=152 Identities=13% Similarity=-0.002 Sum_probs=103.2
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHhhcccCch-------HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCc
Q 008651 29 TKSATTLTNFTGTAFLLALFGGFISDTYLSRF-------KTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQ 101 (558)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (558)
....|..+...+...++.|+..++--+ .+++ .-+-+++++...+.+++..... +.
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~-----------------~~ 385 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAGI-----------------WF 385 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH-----------------hh
Confidence 445666677777777777777776655 3433 2355566666666666666521 11
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH------h
Q 008651 102 CDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVW------I 175 (558)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~------l 175 (558)
+...+..+.+.++...+++++|.=+..|...++++...|+.- .+..++.+......|..++..+.+. .
T Consensus 386 ~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~ 459 (498)
T COG3104 386 GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPA 459 (498)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchh
Confidence 222334578899999999999999999999999999999876 7999999999999999888777663 2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 176 STNQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 176 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
.+.......|+..+...++..+..+...|
T Consensus 460 ~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 460 YTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 22334455666666554444444443333
No 268
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.02 E-value=0.1 Score=54.45 Aligned_cols=156 Identities=17% Similarity=0.066 Sum_probs=92.3
Q ss_pred hcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcC
Q 008651 23 YMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQC 102 (558)
Q Consensus 23 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (558)
.-|.+...+|++...-.++..+++.++|.++||.-.-|++.++......++.......+..
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~------------------- 355 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF------------------- 355 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-------------------
Confidence 4467778999999999999999999999999994233344444444444443222222211
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccccchhhhhhccC-CCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc-
Q 008651 103 DDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQF-DERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQG- 180 (558)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~-~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g- 180 (558)
....+.++..-.+.|....+..|.-.-+..|.. |..+ +...|+.....++-+++-..+-+.+.+..+
T Consensus 356 ----~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~ 424 (480)
T KOG2563|consen 356 ----LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLSGQIFGVILVFIMGILAEDLGP 424 (480)
T ss_pred ----CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEeehhHHHHHHHHHHHHHhhccCC
Confidence 113345666667778887888888888888776 4443 334444444444444444555566666555
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHhcccccc
Q 008651 181 ---WDWSFGVCTIAVLFATVFVIMGKSLYRH 208 (558)
Q Consensus 181 ---w~~~f~i~~~~~~~~~~~~~~~~~~~~~ 208 (558)
|...-+......++..++..+.++.+++
T Consensus 425 ~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 425 PGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred CCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 4433333333444444444555555443
No 269
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.75 E-value=0.4 Score=51.11 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=82.4
Q ss_pred HHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHH
Q 008651 357 ILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAI 436 (558)
Q Consensus 357 i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 436 (558)
..-|+.+.+.|.+.-+ +.+++.-+.++.++.+++.+.++.... ...+........++
T Consensus 39 ~~Kp~~g~lsD~~pi~------G~rr~~Y~~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIF------GYRRKPYMIIGWLLGAVSALVLALLPA-----------------SESSAAIAVVLLFL 95 (433)
T ss_pred HHhhhHHhhccccccc------CCcchHHHHHHHHHHHHHHHHHHhccc-----------------ccchhhhHHHHHHH
Confidence 3455667777765411 011224466777777666666655421 01233444556677
Q ss_pred HHHHHHHHhHHHHHHHHHhh---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHH
Q 008651 437 FGAADMFTLVGLLDFFYAES---SAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAG 513 (558)
Q Consensus 437 ~g~g~~~~~~~~~~~~~~~~---P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~ 513 (558)
..+|..+.....-+...|.. |.+ +|..++..+..+.+|+.++..+.|...+.. + ....|.+.+.
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---------~---~~~~f~i~~~ 162 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---------G---PQGVFLISAA 162 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---------C---CeEEehHHHH
Confidence 78888888777767777666 444 888899989899999999999988775321 1 1122455555
Q ss_pred HHHHHHHHHHhhhcc
Q 008651 514 ISVLNFGFYLACASW 528 (558)
Q Consensus 514 ~~~v~~~~~~~~~~~ 528 (558)
+.++..+..+++.++
T Consensus 163 ~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 163 LPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHhhhh
Confidence 555555555555554
No 270
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=94.69 E-value=0.57 Score=52.55 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=89.0
Q ss_pred HHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHH
Q 008651 357 ILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAI 436 (558)
Q Consensus 357 i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 436 (558)
+...+.+.+.|++-.|+ +.+.++.++..++.++...... .. ...+......+..+.+
T Consensus 38 l~pilGg~iAD~~lG~~----------~tIl~~~ii~~lG~~llai~a~------------~~-~~~~~~~~~~l~gLaL 94 (654)
T TIGR00926 38 LTPLIGAIIADGWLGKF----------KTILYLSIVYVVGHALLSFGAI------------PS-SGHPLHDLLDLLGLAL 94 (654)
T ss_pred HHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHHHHhccC------------cc-cccchHHHHHHHHHHH
Confidence 34445566777554442 5578888888888777664210 00 0001122335567788
Q ss_pred HHHHHHHHhHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHH
Q 008651 437 FGAADMFTLVGLLDFFYAESSAG---MKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAG 513 (558)
Q Consensus 437 ~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~ 513 (558)
.++|.+..-|+..++..++.+++ .+-....++.+..++|+.+++.+.+++.+..+++- .+..+...|.+.++
T Consensus 95 ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg-----~~~~~~~aF~i~~i 169 (654)
T TIGR00926 95 IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG-----CQDCYPLAFGVPAI 169 (654)
T ss_pred HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----cCcchHHHHHHHHH
Confidence 88999999999999999998754 35566677777888999999988888752110000 01124445666666
Q ss_pred HHHHHHHHHHhhhccc
Q 008651 514 ISVLNFGFYLACASWY 529 (558)
Q Consensus 514 ~~~v~~~~~~~~~~~~ 529 (558)
+++++.+++....+.+
T Consensus 170 ~m~ia~lvf~~g~k~y 185 (654)
T TIGR00926 170 LMILALIVFMAGSKMY 185 (654)
T ss_pred HHHHHHHHHHHhcccc
Confidence 6777766665544444
No 271
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=94.00 E-value=2.2 Score=44.71 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHH
Q 008651 362 YDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAAD 441 (558)
Q Consensus 362 ~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~ 441 (558)
...+.|.++-| ..+..+.+...+...++.+. .+..++-+..++.|++.
T Consensus 61 vflltd~l~Yk-----------pviil~~~~~i~t~~lll~~---------------------~sv~~mq~~q~~yg~~~ 108 (412)
T PF01770_consen 61 VFLLTDYLRYK-----------PVIILQALSYIITWLLLLFG---------------------TSVLAMQLMQFFYGLAT 108 (412)
T ss_pred HHHHHHHhhhh-----------HHHHHHHHHHHHHHHHHHHH---------------------CcHHHHHHHHHHHHHHH
Confidence 34456666665 34555555555555555443 37777777888888887
Q ss_pred HHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 442 MFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 442 ~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
.. -....+|++..+|++.--++++......-+|..++..++-.+.
T Consensus 109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 5666799999999988888888877777777777777766554
No 272
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=93.84 E-value=2.1 Score=43.76 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=52.4
Q ss_pred CCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccch
Q 008651 347 LPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMS 426 (558)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (558)
+........++++++.+.+.||+||| +...+-.++.+++++.-. ..+
T Consensus 74 Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----------~~cl~~cily~~scl~k~----------------------~~~ 120 (354)
T PF05631_consen 74 LFVAGFASSAIFGTFVGSLADRYGRK-----------KACLLFCILYSLSCLTKH----------------------SSN 120 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHh----------------------ccc
Confidence 33444566788999999999999999 446666666666665432 235
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008651 427 VFWLGFQYAIFGAADMFTLVGLLDFFY 453 (558)
Q Consensus 427 ~~~~i~~~~l~g~g~~~~~~~~~~~~~ 453 (558)
...+++.-++.|++..+.+...=++..
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V 147 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMV 147 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777889999998888876655544
No 273
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.45 E-value=1 Score=47.76 Aligned_cols=137 Identities=9% Similarity=0.019 Sum_probs=106.8
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..+..|+..+ |+++...|..=+.-.+....+.+...++.+| +|..|+=++++........++..+-..|.-.
T Consensus 279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~------ 350 (432)
T PF06963_consen 279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSP------ 350 (432)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 3466788766 9999999999999999999999999999999 7999999999888777766666654433110
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
....+...++.+.++.=+|-=+..-+..-++-|..|+++ |+...+......++--.+-..++-
T Consensus 351 -----------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 351 -----------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred -----------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 012355666666666667777888889999999999887 999999999999988887765544
Q ss_pred Hh
Q 008651 174 WI 175 (558)
Q Consensus 174 ~l 175 (558)
..
T Consensus 414 i~ 415 (432)
T PF06963_consen 414 IF 415 (432)
T ss_pred cc
Confidence 43
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=1.6 Score=46.55 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhH----HHHHh---hcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 34 TLTNFTGTAFLLALF----GGFIS---DTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~----~G~la---Dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
+...+.++..++..+ .+.+. +| +||++.+.++.++..++.++.-+.. |...|- +.+..++.+..
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~------~~t~~~~~~~~ 350 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPL------RPTDSPPLLFT 350 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCCC------CCCcccccccc
Confidence 334444444444444 44444 55 7999999999999888888877653 211110 00111222222
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTF 171 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 171 (558)
+ +.....+.-++.|++-+.........+++.+|++ |..+++++-.--.+++.++...
T Consensus 351 ~-~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 351 P-SYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred c-chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHhhh
Confidence 2 3556677778999999999999999999999654 8999999888888877765433
No 275
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=92.97 E-value=13 Score=38.78 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSL 481 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~ 481 (558)
+-+|.+....++|+..+-.....+.++.+.+|++.+-.+..+..+....|-..|..
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55677778899999999988888899999998887766666655555445444443
No 276
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=92.56 E-value=0.82 Score=48.08 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=87.4
Q ss_pred CCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCcc
Q 008651 345 PSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLP 424 (558)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (558)
+......++..++..|+.+...||...|+.+|+ ..+.++.+..+++++++++...... .+.++...+
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~-------~lgd~~~~~ 136 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGL-------LLGDNERKP 136 (498)
T ss_pred cccccccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhH-------HhcCCcccc
Confidence 445566678888999999999998888775432 4477888888888888776532111 112222221
Q ss_pred ---chhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 008651 425 ---MSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSL-STAISWCSIAFGYFLSSLVVEIV 486 (558)
Q Consensus 425 ---~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~gi~~~~~~lg~~lg~~l~~~i 486 (558)
......++..-++-+..-+...+.=++..+....+.+-+ +.+.+.+...+|+.+|-.+.++.
T Consensus 137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 223333445556667766666666688888887777777 99999999999999998776643
No 277
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.18 E-value=1.8 Score=42.31 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHhhcccCchHH---HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 30 KSATTLTNFTGTAFLLALFGGFISDTYLSRFKT---CVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
--|.+.+.|..++.++.-+...+..| .|.|+ +.+...+..+...+...... ..| .
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP-----------------~ 340 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTSS---VSP-----------------S 340 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHhc---cCC-----------------C
Confidence 35788888888888888888777776 33333 34444343333333333221 111 1
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFG 186 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~ 186 (558)
..+...-+++..+.-.+.|..+|+..-+=....|++. |+..++++..-.|+-..++-..--.=....+-|..|.
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG 414 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence 1234444677777788889999999999999999887 9999999998888766654222111122245678999
Q ss_pred HHHHHHHHHHHH
Q 008651 187 VCTIAVLFATVF 198 (558)
Q Consensus 187 i~~~~~~~~~~~ 198 (558)
+|.....++.+.
T Consensus 415 icS~~~~~a~i~ 426 (454)
T KOG4332|consen 415 ICSAFLFVASIL 426 (454)
T ss_pred hhHHHHHHHHHH
Confidence 998887766554
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=91.16 E-value=25 Score=37.89 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 428 FWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 428 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~ 488 (558)
..++..+.+..+.....+...+++-++++.+..-|++|.+.|+..++|+.--..++-.+.+
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 4445577888888888999999999999999999999999999999998877666555543
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.67 E-value=26 Score=37.36 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVV 483 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~ 483 (558)
+-++.++..+++|+..+......+.+..+.++++.|..+..+..+...+|-..|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667789999999999999999999999999998888888877777777776653
No 280
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=90.48 E-value=8.1 Score=41.56 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 432 FQYAIFGAADMFTLV-GLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 432 ~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~ 488 (558)
..++...+-...... ..|.++.|..+.++..+..++.....++|..+++.+...+.+
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 888999999999999999999999999999999988887753
No 281
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=89.94 E-value=4.4 Score=39.11 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=68.1
Q ss_pred hHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHH
Q 008651 353 VFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGF 432 (558)
Q Consensus 353 ~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 432 (558)
+...+..++.+.+.|+.+|| +.+..+.....++.+...... ....+..+.
T Consensus 50 ~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 99 (338)
T COG0477 50 LGYAIGSLLAGPLGDRYGRR-----------KVLIIGLLLFLLGTLLLALAP-------------------NVGLALLLI 99 (338)
T ss_pred HHHHHHhhhhhhccccccch-----------HHHHHHHHHHHHHHHHHHhCc-------------------cchHHHHHH
Confidence 33444446778888887665 334444443333333333321 013455555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhch-hhHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 008651 433 QYAIFGAADMFTLVGLLDFFYAESSA-GMKSLSTAISWC-SIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 433 ~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~-~~~lg~~lg~~l~~~i~ 487 (558)
..+..|++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+.
T Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668888888889999999999998 678888888777 56677777776666554
No 282
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=88.75 E-value=13 Score=37.33 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLV 482 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l 482 (558)
+.+.++..+++=|+-.+..+....--+.+..+++.|-.+|+.......+|-.++..+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~l 397 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLL 397 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHH
Confidence 445555555666666666666666667788899999999998877766666665554
No 283
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=87.50 E-value=11 Score=36.91 Aligned_cols=58 Identities=14% Similarity=0.365 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHH--HHH-Hhc--cccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 008651 150 FSSFFNWFLFSLTVGSIIGVT--FIV-WIS--TNQGWDWSFGVCTIAVLFATVFVIMGKSLYR 207 (558)
Q Consensus 150 r~~~~~~~~~~~~ig~~~g~~--~~~-~l~--~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~ 207 (558)
|+....+..++.|+|+++.-. +.+ -.. -.-.|++.+.+.++..++-++++.+..++++
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd 66 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFD 66 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 677777777888999987622 222 111 1234999998888877777777666555543
No 284
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=84.85 E-value=34 Score=37.09 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=37.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 447 GLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 447 ~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~ 488 (558)
..|.++.+..+.++..+..++.....++|..+++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998887764
No 285
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=83.42 E-value=7 Score=41.00 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008651 109 QVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWIS 176 (558)
Q Consensus 109 ~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 176 (558)
+.+..++.-+..|+..|....+....+.|..|+++ |..+++...++-++|..++..++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67777788888999999999999999999887766 999999999999999998877766653
No 286
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=80.96 E-value=19 Score=38.78 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCcccCC--CCCcchhHHHHHHHHHHHHHHHHH
Q 008651 446 VGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVS--GGWLASN--NLNRDKLNYFYWLLAGISVLNFGF 521 (558)
Q Consensus 446 ~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~--~~~~~~~--~~~~~~~~~~f~~~~~~~~v~~~~ 521 (558)
...-..+.++..++.+|-+.......+..|.+++-.+.-.+...+ ..|+.+. +-+--....|..+.+.+.++..+.
T Consensus 137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~ 216 (544)
T PF13000_consen 137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTIL 216 (544)
T ss_pred ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 444445556677777888877777677777777766655544322 2232211 111122344445566666666666
Q ss_pred HHhhhccc
Q 008651 522 YLACASWY 529 (558)
Q Consensus 522 ~~~~~~~~ 529 (558)
..++.++.
T Consensus 217 v~~~k~E~ 224 (544)
T PF13000_consen 217 VAFFKKEK 224 (544)
T ss_pred HheEeecc
Confidence 66666553
No 287
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=80.39 E-value=89 Score=33.63 Aligned_cols=135 Identities=11% Similarity=0.017 Sum_probs=92.0
Q ss_pred CchhhhHHHHHHHH-HHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC--------
Q 008651 27 SLTKSATTLTNFTG-TAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPN-------- 97 (558)
Q Consensus 27 s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 97 (558)
++....++-+.+.. +..+..++-+++.++ ..|.+++-.....+....+++++.-. |-||-..|+
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~~~F~~fF~LFa~Vi~------P~~~~~hp~~~~~~~~~ 131 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIILGFFLGFFALFAFVIY------PYKDILHPDPEFSRDLF 131 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHh------ccccccCCCHHHHHHHH
Confidence 45566677777766 778889999999999 79999999999899999999988753 223222221
Q ss_pred CcC------cCCCCCchhHHHHHHHHHHHHHhccccc-cchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008651 98 LVN------QCDDADGTQVAILFTGLYLFACGTGGVK-AALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVT 170 (558)
Q Consensus 98 ~~~------~~~~~~~~~~~~~~~~~~l~g~g~g~~~-~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 170 (558)
..+ .-..-+.++...+++.-=+-| ..+. -..+.+..|.++.+| -.|.++.++.+.|++..++..
T Consensus 132 ~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg---slV~S~lFw~faNeitt~~e------akRFy~lf~l~~ni~lllsg~ 202 (509)
T COG3202 132 ADLPMFLKWFILIVGEWSYSLFYIMAELWG---SLVLSLLFWQFANEITTIEE------AKRFYPLFGLGANISLLLSGE 202 (509)
T ss_pred hhCCccceeeeEeecchHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHH
Confidence 001 111222344444443322222 2222 245778888888887 789999999999999999988
Q ss_pred HHHHhcc
Q 008651 171 FIVWIST 177 (558)
Q Consensus 171 ~~~~l~~ 177 (558)
+..++..
T Consensus 203 ~~~~~~k 209 (509)
T COG3202 203 VTSWLSK 209 (509)
T ss_pred HHHHHhh
Confidence 8888865
No 288
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.32 E-value=37 Score=33.23 Aligned_cols=63 Identities=6% Similarity=-0.009 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008651 461 KSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWY 529 (558)
Q Consensus 461 rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 529 (558)
|..++|+..+.++..+.+..+..+.+ ||+. .+......+..-++-.++.+++..++.+.+.+.
T Consensus 77 ~~iGLglg~liW~s~n~l~Gw~~grf-----GlFg-~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 77 KTIGLGLGMLIWGSVNCLTGWASGRF-----GLFG-LDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhc-----eecc-ccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 44444444444444444445555443 4543 211111222222345555566666655554443
No 289
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=71.97 E-value=82 Score=33.62 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCC--CCcch
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNN--LNRDK 503 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~--~~~~~ 503 (558)
..+..+...++.|++.++.......++. ..|++.- +.+...+++++.++..+--..... .. ++ .. ..
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~~----~a~~~G~g~aGv~~s~~~ii~~a~----~~-~~~~~~-~~ 173 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTYS----SAVMSGQGLAGVLTSLAMILVKAS----GN-DSHGLK-KS 173 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHHH----HHHHhcchhHHHHHHHHHHHHHHh----cC-Cccchh-hh
Confidence 4455566677888888888888877664 5565433 222333444444443332111100 01 11 11 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 008651 504 LNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 504 ~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
...||.+.+++.+++.+.+..+
T Consensus 174 a~~YF~~a~~v~l~~i~~~~~l 195 (437)
T TIGR00939 174 ALGYFGTPCVVQLICIVCYLLL 195 (437)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 2345666666677776666544
No 290
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.57 E-value=15 Score=30.39 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Q 008651 32 ATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAI 79 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~ 79 (558)
+.-+++=.+...+....-||+-|||+|.++-.++.+.+...+.....+
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 344555567777777888999999999998877666655555444443
No 291
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=70.34 E-value=1.6e+02 Score=31.73 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 446 VGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 446 ~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~ 488 (558)
-..+.++.|....++..+..++++...+++..+++.+.....+
T Consensus 167 ~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 167 LLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788899999999999999999999999999988887764
No 292
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=69.52 E-value=1.5e+02 Score=31.23 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhH
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLN 505 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~ 505 (558)
..+..+....+.+++.+.........+. ..|++.-...++ .+++++.+.+.+.-...... ++.. .+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~ytqavm~----G~a~aG~l~Sl~~i~tka~~------~~~~-~sA~ 183 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYTQAVMS----GQALAGTLTSLLRILTKAAF------SDSR-TSAL 183 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHHHHHHh----cchhHhHHHHHHHHHHHHhc------CCCC-ceee
Confidence 4455566777888888888877777654 445543333222 22334443333221111100 1111 2233
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008651 506 YFYWLLAGISVLNFGFYL 523 (558)
Q Consensus 506 ~~f~~~~~~~~v~~~~~~ 523 (558)
.||.+-.++.+++.+.+.
T Consensus 184 ~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 184 IYFITSTVILLLCFVLYL 201 (406)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456667777777777766
No 293
>PRK03612 spermidine synthase; Provisional
Probab=68.14 E-value=1.5e+02 Score=32.35 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008651 435 AIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVN 487 (558)
Q Consensus 435 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~ 487 (558)
++.++-.+..+|...-+..+.. .+.-|...|-....+.+|+.+|+.+.+++.
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 3445555555666544443221 112355667777788899999998888775
No 294
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=62.52 E-value=23 Score=39.17 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=89.4
Q ss_pred HHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhh---cccccCCCCCccchhHHH
Q 008651 356 FILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRK--SVAV---EHNMVDSIEPLPMSVFWL 430 (558)
Q Consensus 356 ~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~ 430 (558)
.....+.+++.|-+..|. +.+.++.++..++++.......... .... .++ -.+..+.......+
T Consensus 87 ~~~~l~g~~laD~f~gry----------~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~-~~c~~~s~~q~~~~ 155 (571)
T KOG1237|consen 87 FLLPLLGAFLADSFLGRY----------FTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG-NVCESPSKLQLAVL 155 (571)
T ss_pred HHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC-CcccCcchHHHHHH
Confidence 334455667777665554 6678888888887666554432221 1110 000 00111222333445
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhc----hhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchh
Q 008651 431 GFQYAIFGAADMFTLVGLLDFFYAESS----AGMKS--LSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKL 504 (558)
Q Consensus 431 i~~~~l~g~g~~~~~~~~~~~~~~~~P----~~~rg--~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~ 504 (558)
...+.+.++|.+..-|...++..++.+ ++.+. .....+.+..++|..++..+..++.+. .+|
T Consensus 156 ~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~-~~w----------- 223 (571)
T KOG1237|consen 156 YGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN-VGW----------- 223 (571)
T ss_pred HHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc-ccc-----------
Confidence 557777888899989999999999988 22223 556677778888888888887766311 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccch
Q 008651 505 NYFYWLLAGISVLNFGFYLACASWYRY 531 (558)
Q Consensus 505 ~~~f~~~~~~~~v~~~~~~~~~~~~~~ 531 (558)
..-|.+.++..+++.++++...+.++.
T Consensus 224 ~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 224 KLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred eeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 233456666666666666655544443
No 295
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=57.71 E-value=51 Score=23.68 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHH
Q 008651 36 TNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGL 74 (558)
Q Consensus 36 ~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~ 74 (558)
+.......+.....|+..|++++.++...+..++..+..
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~ 45 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAA 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 444556666777889999998999777665554444433
No 296
>PF12832 MFS_1_like: MFS_1 like family
Probab=57.28 E-value=6.1 Score=30.87 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCCCCcChhHHHHHHhhhhhhhhhhhhh
Q 008651 345 PSLPVIPLVFMFILVPIYDRVFIPIARK 372 (558)
Q Consensus 345 ~~~~~~~~~~~~i~~~~~~~l~~~~~~r 372 (558)
+.+..+.+...+++.|+++.+.||.+++
T Consensus 38 Gil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 38 GILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4455666778889999999999999988
No 297
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=53.47 E-value=86 Score=32.79 Aligned_cols=96 Identities=11% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCcccCCCCCcc--hhHHHH
Q 008651 433 QYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVS--GGWLASNNLNRD--KLNYFY 508 (558)
Q Consensus 433 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~--~~~~~~~~~~~~--~~~~~f 508 (558)
.++++-+.....-...-..+..+..++..|-+.......+..|.+++..+.-.+...+ ..++.+...+++ ....++
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~ 218 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYL 218 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHH
Confidence 3445555555555566666667777777777766665566666666554433222111 111110111222 234566
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 008651 509 WLLAGISVLNFGFYLACASW 528 (558)
Q Consensus 509 ~~~~~~~~v~~~~~~~~~~~ 528 (558)
|+.+....++-.+..+..++
T Consensus 219 ~fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 219 WFWGALFIVATTLVALLKKE 238 (510)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 77777777777776666544
No 298
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=46.83 E-value=77 Score=28.38 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=52.5
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccc
Q 008651 51 FISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAA 130 (558)
Q Consensus 51 ~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 130 (558)
.++||. .||+.+.+.+-.++|...+.+...+-. +. +.+-..+..+++..++.|+|.-+ .
T Consensus 56 ~Vs~RM--~rRm~~~~GiP~~lG~~~f~~~y~l~~--------------~~--~~dvP~~~~~~~S~~~Fg~gllG---i 114 (153)
T PF11947_consen 56 VVSNRM--LRRMAVFVGIPTALGVAVFVVFYYLKS--------------RQ--IVDVPPWAVLLVSLVFFGLGLLG---I 114 (153)
T ss_pred HHHHHH--HHHHHHHhchHHHHHHHHHHHHHHHHh--------------cc--ccccCchHHHHHHHHHHHHHHHh---h
Confidence 478995 555555555566666665555432110 00 00112344555555555555433 3
Q ss_pred hhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Q 008651 131 LPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIG 168 (558)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 168 (558)
.+..++...+++. -|+.+|+-.+-.|++-+.-
T Consensus 115 sYGilSaSWD~~r------~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 115 SYGILSASWDPER------EGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred hhhhcccccCCCC------CCCcccHHHHHHhHHHHHH
Confidence 5566666777775 6999999988888876643
No 299
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=46.66 E-value=2.5e+02 Score=26.27 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 008651 157 FLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVL 193 (558)
Q Consensus 157 ~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~ 193 (558)
.+...-++.++|..+++++.+..+. +.++++.+..+
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~l~ 202 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF-WALLLPALLLL 202 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 4445556666666777777777674 45555544433
No 300
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=45.76 E-value=1.1e+02 Score=31.39 Aligned_cols=74 Identities=11% Similarity=-0.051 Sum_probs=50.7
Q ss_pred HHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHH
Q 008651 40 GTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYL 119 (558)
Q Consensus 40 ~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (558)
.......++.+.+..+ +|-|.+++++...+. +.......| .+-.++.+-.+
T Consensus 69 ~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~----lyiA~Nl~p------------------------r~~tlVPa~~~ 119 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYA----LYIAANLEP------------------------RYETLVPAGLV 119 (390)
T ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH----HHHHhhcch------------------------hHHhhccHHHh
Confidence 3334445555577777 899999987765443 333222212 56688888899
Q ss_pred HHHhccccccchhhhhhccCCCC
Q 008651 120 FACGTGGVKAALPSLGADQFDER 142 (558)
Q Consensus 120 ~g~g~g~~~~~~~~~i~~~~~~~ 142 (558)
.|+|.+..+++--+++++.-..+
T Consensus 120 ~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 120 LGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred hccccccccccCcceecHHHHHH
Confidence 99999999999888888775433
No 301
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.56 E-value=1.5e+02 Score=24.79 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008651 457 SAGMKSLSTAISWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 457 P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~ 488 (558)
.++.++.++++-...-.+++.+-.+..|++.+
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888777777777777777777763
No 302
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=41.46 E-value=96 Score=25.63 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHH
Q 008651 35 LTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCI 69 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~ 69 (558)
++...+...+...+.|...|++++..+.+.+.+++
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 34445555666677788888888987755444333
No 303
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=28.94 E-value=4.6e+02 Score=29.93 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=24.8
Q ss_pred HHHHHhh---cccCchHHHHHHHHHHHHHHHHHHHhh
Q 008651 48 FGGFISD---TYLSRFKTCVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 48 ~~G~laD---r~~Grr~~l~~~~~~~~~~~~~~~~~~ 81 (558)
+.+-++| ++-||.|-++++.++++++++...+..
T Consensus 42 ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~ 78 (701)
T TIGR01667 42 IAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLF 78 (701)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555 445678889999999999888888764
No 304
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=27.37 E-value=60 Score=31.95 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHH---------hhcccCchHHH
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFI---------SDTYLSRFKTC 63 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l---------aDr~~Grr~~l 63 (558)
.++-.|++ +.|.++.+.+.+..+-++.-++..++.|.. -|| +|||+..
T Consensus 38 TYlllflt-qiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~w 94 (412)
T KOG4830|consen 38 TYLLLFLT-QIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMSW 94 (412)
T ss_pred HHHHHHHH-HhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceeee
Confidence 55667775 678899999999999999999999999855 478 7998764
No 305
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=27.28 E-value=5.2e+02 Score=29.53 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=23.9
Q ss_pred HHHHhh---cccCchHHHHHHHHHHHHHHHHHHHhh
Q 008651 49 GGFISD---TYLSRFKTCVLFGCIELLGLAILAIQA 81 (558)
Q Consensus 49 ~G~laD---r~~Grr~~l~~~~~~~~~~~~~~~~~~ 81 (558)
.+-++| ++-||.|-++++.++++++++...+..
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~ 78 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF 78 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344554 445778888899988888888877654
No 306
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.94 E-value=1.5e+02 Score=23.95 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccC
Q 008651 156 WFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNV 210 (558)
Q Consensus 156 ~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (558)
++.....+|+++| .+-|+..+.++| ..++.++...+..++.+--.|++++++
T Consensus 27 ~~q~ilti~aiVg-~i~Gf~~Qqls~--tvy~vg~~~v~t~li~LPpwP~y~rn~ 78 (101)
T KOG4112|consen 27 FQQLILTIGAIVG-FIYGFAQQQLSV--TVYIVGAGFVFTLLITLPPWPWYRRNP 78 (101)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCchhhhcCc
No 307
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.63 E-value=2.1e+02 Score=22.28 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHH
Q 008651 154 FNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFV 199 (558)
Q Consensus 154 ~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 199 (558)
--+......++++++ .+.|++.++ .+..+++.++..++++++.
T Consensus 10 e~l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~ 52 (76)
T PF06645_consen 10 EKLMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVV 52 (76)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhhe
Confidence 334555666777766 566676653 4556665555554444443
No 308
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.49 E-value=3.4e+02 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhh
Q 008651 154 FNWFLFSLTVGSIIGVTFIVWISTNQGWDW 183 (558)
Q Consensus 154 ~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~ 183 (558)
+|...+...+..++|..+|-||-+.++-..
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 444555556666677777778877776433
No 309
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=21.38 E-value=3.1e+02 Score=21.55 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=27.0
Q ss_pred Hhhhhhhhhhhhhhh----cCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008651 359 VPIYDRVFIPIARKI----TGIPTGIRQLQRIGVGLVLSAVSMAVAAVVE 404 (558)
Q Consensus 359 ~~~~~~l~~~~~~r~----~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~ 404 (558)
+.+.+++-.|.|+|+ ..||+.-+....+..|.++++..+..+....
T Consensus 17 A~~GD~iG~kvGKkrlslFgLRPr~Ta~lVti~TG~~Is~~tl~vl~~~s 66 (79)
T PF11283_consen 17 AYLGDRIGSKVGKKRLSLFGLRPRYTAILVTILTGVLISALTLGVLFLLS 66 (79)
T ss_pred HHHHHHHHHHHhHHHhhhhcCCCccceeehHHHHhHHHHHHHHHHHHHHh
Confidence 334444545555543 2344444455667788888888777766553
No 310
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=21.33 E-value=1.2e+02 Score=31.74 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008651 446 VGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLV 482 (558)
Q Consensus 446 ~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l 482 (558)
+...-...+.+|++.|....|+-|..+..-..+--.+
T Consensus 405 lAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 405 LAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhE
Confidence 4444557788999999999999988877666555433
Done!