Query 008651
Match_columns 558
No_of_seqs 168 out of 1787
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 08:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.5E-30 8.6E-35 277.5 26.7 432 2-531 22-477 (491)
2 2xut_A Proton/peptide symporte 100.0 8.1E-30 2.8E-34 275.9 21.8 461 2-532 21-509 (524)
3 4gc0_A D-xylose-proton symport 100.0 3.9E-29 1.3E-33 268.0 18.6 415 27-545 53-482 (491)
4 1pw4_A Glycerol-3-phosphate tr 100.0 5.4E-27 1.8E-31 248.1 25.2 374 17-526 51-434 (451)
5 3o7q_A L-fucose-proton symport 99.9 5.3E-25 1.8E-29 232.0 26.3 335 14-488 46-406 (438)
6 2gfp_A EMRD, multidrug resista 99.9 6.6E-24 2.2E-28 219.3 15.1 333 8-487 15-350 (375)
7 2cfq_A Lactose permease; trans 99.9 1.4E-23 4.9E-28 220.8 6.6 372 9-527 23-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 5.9E-12 2E-16 132.3 14.2 166 4-201 263-432 (451)
9 3o7q_A L-fucose-proton symport 99.2 1E-10 3.4E-15 122.5 14.9 155 6-197 271-427 (438)
10 2cfq_A Lactose permease; trans 99.1 7.5E-11 2.6E-15 123.4 9.3 155 12-200 239-397 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 1.3E-09 4.6E-14 115.9 10.9 171 8-204 298-473 (491)
12 4gc0_A D-xylose-proton symport 98.9 4.6E-08 1.6E-12 103.8 17.9 161 16-205 299-465 (491)
13 2gfp_A EMRD, multidrug resista 98.6 5.4E-08 1.9E-12 99.5 6.5 138 346-527 39-176 (375)
14 2xut_A Proton/peptide symporte 98.4 3.4E-07 1.2E-11 98.1 9.1 136 347-525 59-198 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.5e-30 Score=277.49 Aligned_cols=432 Identities=15% Similarity=0.195 Sum_probs=287.7
Q ss_pred ccchhhhhhhhHHHHHHHhhhh-----cCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 008651 2 EGLESMSFVANMVSLVTYFHGY-----MNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAI 76 (558)
Q Consensus 2 ~~~~~~~~y~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~ 76 (558)
.+++++++|++..+++.|++++ +|+|..+.+++.+.+.++..++++++|+++||++|||+++..+.++..++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 3567899999999999999988 99999999999999999999999999999999339999999999999999998
Q ss_pred HHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHH
Q 008651 77 LAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNW 156 (558)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 156 (558)
++++. +.+.++++|+++|+|.|...++..++++|++|+++. +|+.++++
T Consensus 102 ~~~~~---------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~ 150 (491)
T 4aps_A 102 LALPF---------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSI 150 (491)
T ss_dssp HHSCC---------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHH
T ss_pred HHHhh---------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehH
Confidence 88753 566889999999999999999999999999998752 37778888
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhccccccc---CCCCC-hhHHHHHHHH--------
Q 008651 157 FLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHN---VPKGS-PIIRILQVFV-------- 224 (558)
Q Consensus 157 ~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~-------- 224 (558)
++...++|..+||.+++++.+..|||+.|++.++..+++.+.++...++...+ +|+.+ +..+..+...
T Consensus 151 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 230 (491)
T 4aps_A 151 FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG 230 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877666666555443332211 11111 1111111000
Q ss_pred ------HHHhhCCCCCCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHH
Q 008651 225 ------AAIHNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEE 298 (558)
Q Consensus 225 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (558)
......... .++...... ........... . ..|+.... ...+
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~~-----------------~~~~~~~~~~~-~------------~~~~~~~~-~~~~ 278 (491)
T 4aps_A 231 FIAIIVVMNLVGWNS-LPAYINLLT-----------------IVAIAIPVFYF-A------------WMISSVKV-TSTE 278 (491)
T ss_dssp HHHHHHHHHHHSSCC-TTHHHHHHH-----------------HHHHHHHHHHH-H------------HHC----------
T ss_pred HHHHHHHHHhccCcc-cccchhhhh-----------------HHHHHHHHHHH-H------------HHhhcccc-cHHH
Confidence 000000000 000000000 00000000000 0 00000000 0122
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhcccceeeeeccc-ccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCC
Q 008651 299 TKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTT-MDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIP 377 (558)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~ 377 (558)
+++.............++..+.+..+.+..+... .+.. ..+.+.....+.+..+++.++.+++.||++||..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~--- 351 (491)
T 4aps_A 279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP--- 351 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC---
Confidence 3333344444555555566655555432222111 1111 1345566777788888899999999999988732
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 008651 378 TGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESS 457 (558)
Q Consensus 378 ~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P 457 (558)
...+.+..+.+++++++++........ ....+.+.++.++..++.+++.+...|..++++.+.+|
T Consensus 352 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 352 ---SSPTKFAVGLMFAGLSFLLMAIPGALY------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp ----CHHHHHHHHHHHHHHHTTTHHHHHHC------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 445667788888888887776543110 00123466777788899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 008651 458 AGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRY 531 (558)
Q Consensus 458 ~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 531 (558)
++.||+++|+.++...+|..+++.+.+.+.+ ..+...|+.+++++++..++.+++.++.++
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-------------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877642 112345677788888877777766555443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=8.1e-30 Score=275.94 Aligned_cols=461 Identities=20% Similarity=0.323 Sum_probs=277.3
Q ss_pred ccchhhhhhhhHHHHHHHhhhhcC------CCchhhhHHHHHHHHHHHHHhhHHHHHhhccc-CchHHHHHHHHHHHHHH
Q 008651 2 EGLESMSFVANMVSLVTYFHGYMN------FSLTKSATTLTNFTGTAFLLALFGGFISDTYL-SRFKTCVLFGCIELLGL 74 (558)
Q Consensus 2 ~~~~~~~~y~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~~~~~~~~~~ 74 (558)
.+++++++|++..+++.|+++++| +|..+.+++.+.+.++..++.+++|+++|| + |||+++.++.++..++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 357789999999999999999999 999999999999999999999999999999 8 99999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhh--
Q 008651 75 AILAIQAHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSS-- 152 (558)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~-- 152 (558)
++++++. .+.+.++++|++.|+|.+...+...++++|++|+++ |++
T Consensus 100 ~~~~~~~--------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 147 (524)
T 2xut_A 100 AFLAIFE--------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQ 147 (524)
T ss_dssp HHHHHTS--------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHH
T ss_pred HHHHHhc--------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHH
Confidence 9888763 156788999999999999999999999999999886 654
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCC
Q 008651 153 -FFNWFLFSLTVGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRN 231 (558)
Q Consensus 153 -~~~~~~~~~~ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (558)
.+++++...++|.++||.+++++.+..||++.|++.++..+++.+.++..+++.++++|++++..+..+.+....+++.
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 4555999999999999999999998899999999988877666665554444333322322221111111111122111
Q ss_pred CCCCCccchhhhhccccccccccccccccchh---------hhhHhhhhcccCCCCCCcCCCCCCCc-------ccchhh
Q 008651 232 LPKPEMADQLHEIHDREAGLDTEILKRTDQFR---------FLDRAAITRTACDGRASTSINPGPWR-------LCTVTQ 295 (558)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 295 (558)
.. ++......+.. +.........+.++.. +...... ...+|+ .+...+
T Consensus 228 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 291 (524)
T 2xut_A 228 EG-KGNIGLVLALI--GGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV-------------GAGASLQLERARKSHPDAA 291 (524)
T ss_dssp TT-HHHHHHHHHHH--HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHH-------------HTGGGTHHHHSCCSCCSSS
T ss_pred cc-cCccchhhhhh--hhhhhhhhhcccchhhhhhhhhhhhhhhhccc-------------ccchhhHHhhhhccccHhH
Confidence 10 00000000000 0000000000000000 0000000 000110 000001
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcC
Q 008651 296 VEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITG 375 (558)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~ 375 (558)
.++.++.............++..+.+..+.+..+...++... + .+.+.+...+.+..++..++.+++..+..+|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 367 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG- 367 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC-
Confidence 122333333444444444555555555554443322222210 0 123344556667777888888877522222211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 008651 376 IPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAE 455 (558)
Q Consensus 376 ~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~ 455 (558)
++.+..+.+.+|.++++++++++....... +.....+.+++++.+++.+++++...+..++++.+.
T Consensus 368 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 433 (524)
T 2xut_A 368 --VKLTALRKMGAGIAITGLSWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433 (524)
T ss_dssp -----CCHHHHHTHHHHHHHHHHTTTTTTTTT------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112445667788888888777665431000 001124566777888999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCcccCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008651 456 SSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVS-GGWLASN-NLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYK 532 (558)
Q Consensus 456 ~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~-~~~~~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 532 (558)
+|++.||+++|+.++...+|+.+++.+.+.+.+.+ .+|.. + +.+. ....|++.+++++++.++++++.++++++
T Consensus 434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV-QTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH-HHHSCH--HHHHHHHHHHHHHHHHHHHC---------
T ss_pred CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999875321 12221 0 1111 12236778888888877777666555443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=3.9e-29 Score=268.02 Aligned_cols=415 Identities=12% Similarity=0.037 Sum_probs=240.6
Q ss_pred CchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcCcCCCCC
Q 008651 27 SLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVAPNLVNQCDDAD 106 (558)
Q Consensus 27 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
++.+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++......... ...-...-
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~---------~~~~~~~~ 122 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP---------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS---------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---------hhHHHHHH
Confidence 44667899999999999999999999999 799999999999999999999864210000000 00000000
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc--------
Q 008651 107 GTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWISTN-------- 178 (558)
Q Consensus 107 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~-------- 178 (558)
..+++.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+....+|.++++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 1368899999999999999999999999999999986 99999999999999999998887766533
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhcccccc-ccccccc
Q 008651 179 QGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAG-LDTEILK 257 (558)
Q Consensus 179 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 257 (558)
.+||+.+.+..+..++.++..+. .||+|+++..++++|+. ...++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhc
Confidence 34666666555443333332211 12222232222221100 0000000
Q ss_pred cccch-----hhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHH-HHHHHHHhhcccceeeeecc
Q 008651 258 RTDQF-----RFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVS-TLFMNTCLAQLQTFCIQQST 331 (558)
Q Consensus 258 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (558)
..+.. +..+..... ++. .. .......++.......... ..........+.+......
T Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHG-RKT----------GG-----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL- 307 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHH----------TT-----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred CCchhHHHHHHHHHHHHhh-hhh----------hh-----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-
Confidence 00000 000000000 000 00 0000000111111000000 0000000000000000000
Q ss_pred cccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008651 332 TMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVA 411 (558)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~ 411 (558)
..+ ............+..+++..+..++.||++|| +.+..+...++++++..+.....
T Consensus 308 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~----- 365 (491)
T 4gc0_A 308 GAS------TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT----- 365 (491)
T ss_dssp SCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCC------ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc-----
Confidence 000 00011123334556677778889999999999 55677777777777666544211
Q ss_pred hcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008651 412 VEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSG 491 (558)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~ 491 (558)
.......++...++.........|..+.+..|..|.+.|++++|+.+..+.+++.+++.+.|.+.+..
T Consensus 366 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~- 433 (491)
T 4gc0_A 366 -----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS- 433 (491)
T ss_dssp -----------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred -----------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 01122222222222222233345777889999999999999999999999999999999888774321
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcccccccc
Q 008651 492 GWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACASWYRYKEVEIKQVEDCSDV 545 (558)
Q Consensus 492 ~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (558)
|.. ...+....|++++++++++.++.+++.+|+|+|+.||.++..+++.
T Consensus 434 -~~~----~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 434 -WLV----AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp -HHH----HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred -HHH----hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 000 0011224578889999999999999999999999999887776544
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=5.4e-27 Score=248.08 Aligned_cols=374 Identities=8% Similarity=-0.030 Sum_probs=244.8
Q ss_pred HHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH----hhhccccCCCCCC
Q 008651 17 VTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAI----QAHAHQLRPKPCV 92 (558)
Q Consensus 17 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 92 (558)
..++.+++ .+..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..++.+++++ +.
T Consensus 51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----------- 117 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS----------- 117 (451)
T ss_dssp HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS-----------
T ss_pred HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccc-----------
Confidence 34556778 999999999999999999999999999999 79999999999999999999988 53
Q ss_pred CCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008651 93 GVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFI 172 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 172 (558)
+++.++++|+++|++.+...+...+++.|.+|+++ |++++++.+...++|.++||.++
T Consensus 118 ----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 118 ----------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp ----------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 55688999999999999999999999999999876 99999999999999999999999
Q ss_pred HHhccccc-hhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccccccc
Q 008651 173 VWISTNQG-WDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDREAGL 251 (558)
Q Consensus 173 ~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (558)
+++.+..| ||+.|++.++..++..++..+..++.+.+....+. .+. +.+.++ +.
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-----~~~~~~-~~ 230 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-------------------EEY-----KNDYPD-DY 230 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------------TTT-----CCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------------hhh-----cccccc-cc
Confidence 99888888 99999998877665544443333321111000000 000 000000 00
Q ss_pred cccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhh-hHHHHHHHhhHHHHHHHHHHHHHhhcccceeeeec
Q 008651 252 DTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQ-VEETKILLRMLPIIVSTLFMNTCLAQLQTFCIQQS 330 (558)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
. ++ .. +...++...... .++++.....+..+.....+....... +.+..+.
T Consensus 231 ~-~~--~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 282 (451)
T 1pw4_A 231 N-EK--AE------------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS-PTYLKEV 282 (451)
T ss_dssp -----------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHBTTB
T ss_pred h-hh--hh------------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 0 00 00 000000000000 011111111121222222222222111 1122211
Q ss_pred ccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhh--hhhhcCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008651 331 TTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPI--ARKITGIPTGIRQLQRIGVGLVLSA-VSMAVAAVVETKR 407 (558)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~--~~r~~~~~~~~~~~~~~~~g~~l~~-i~~l~~~~~~~~~ 407 (558)
.+.+ ....+.+.....+..+++..+.+++.||+ ++| +.+..+..+.. ++++++...
T Consensus 283 ~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 283 KHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp SCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHHTTSC----
T ss_pred cCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHHHHHHHHh----
Confidence 1111 11122344455666778888889999988 766 34555555544 454444321
Q ss_pred hhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 008651 408 KSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAF-GYFLSSLVVEIV 486 (558)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l-g~~lg~~l~~~i 486 (558)
...+.+......++.|++.+...+....++.+..|++.||+++|+.++...+ |..+++.+.+.+
T Consensus 342 ---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l 406 (451)
T 1pw4_A 342 ---------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 406 (451)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124555666777888888888888889999999999999999999999999 999999999988
Q ss_pred hhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 008651 487 NKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACA 526 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 526 (558)
.+ ..+ +...|++.+++++++.+..+...
T Consensus 407 ~~---------~~g---~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 407 VD---------FFG---WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HH---------SSC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------hcC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 211 34556777777777777666544
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=5.3e-25 Score=231.98 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=225.7
Q ss_pred HHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 008651 14 VSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVG 93 (558)
Q Consensus 14 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (558)
..+.+++.+++|+|+.+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.+++......
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~---------- 114 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEI---------- 114 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhcccc----------
Confidence 344456788999999999999999999999999999999999 799999999999999999998332211
Q ss_pred CCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008651 94 VAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIV 173 (558)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 173 (558)
.+++.++++|++.|+|.|...+...++++|++|+++ |++++++.+...++|.++||.+++
T Consensus 115 --------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 115 --------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 168899999999999999999999999999999987 999999999999999999999999
Q ss_pred Hhc-cccc-------------------------hhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHH
Q 008651 174 WIS-TNQG-------------------------WDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAI 227 (558)
Q Consensus 174 ~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (558)
++. +..+ ||+.|++.+...++..++++..+. ++.+++.+
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~------------- 239 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNH------------- 239 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCC-------------
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccccccc-------------
Confidence 987 5554 999998766655544443333211 11000000
Q ss_pred hhCCCCCCCccchhhhhccccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHH
Q 008651 228 HNRNLPKPEMADQLHEIHDREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLP 307 (558)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 307 (558)
..++ + .... .+..... ++++.....+.
T Consensus 240 ------~~~~-----------------~--~~~~---~~~~~~~-------------------------~~~~~~~~~~~ 266 (438)
T 3o7q_A 240 ------SDAK-----------------Q--GSFS---ASLSRLA-------------------------RIRHWRWAVLA 266 (438)
T ss_dssp ------CCSS-----------------T--TSHH---HHHHHHT-------------------------TCSHHHHHHHH
T ss_pred ------cccc-----------------c--cchh---hhHHHHH-------------------------hChHHHHHHHH
Confidence 0000 0 0000 0000000 00111111111
Q ss_pred HHHHHHHHHHHhhcccceeeeecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHH
Q 008651 308 IIVSTLFMNTCLAQLQTFCIQQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIG 387 (558)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~ 387 (558)
.++............+.++..+..+.+.. ..+.......+..+++.++.+++.||+++| +.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~ 329 (438)
T 3o7q_A 267 QFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------KVLA 329 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHH
Confidence 12222222222222222212221111211 122334444566778888899999999888 5567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHH
Q 008651 388 VGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAI 467 (558)
Q Consensus 388 ~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi 467 (558)
.+.++.++++++..... +. +.+...++.+++.+...|..+.+..+..|++ ++.+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 386 (438)
T 3o7q_A 330 AYALIAMALCLISAFAG---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSF 386 (438)
T ss_dssp HHHHHHHHHHHHHHHCC---------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhH
Confidence 77777777766655421 22 2344557788888888899999999999977 8888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008651 468 SWCSIAFGYFLSSLVVEIVNK 488 (558)
Q Consensus 468 ~~~~~~lg~~lg~~l~~~i~~ 488 (558)
.. ...+|+.+++.+.+.+.+
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHH
Confidence 77 666999999999998874
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=6.6e-24 Score=219.33 Aligned_cols=333 Identities=11% Similarity=0.031 Sum_probs=221.5
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLR 87 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (558)
+.......++ .+.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||+++.+.++..++.++++++.
T Consensus 15 ~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------ 86 (375)
T 2gfp_A 15 AQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS------ 86 (375)
T ss_dssp HHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc------
Confidence 3333344444 4567899999999999999999999999999999999 7999999999999999999998874
Q ss_pred CCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHH
Q 008651 88 PKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSII 167 (558)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 167 (558)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..+
T Consensus 87 ---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 87 ---------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLL 139 (375)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhccc
Q 008651 168 GVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIHDR 247 (558)
Q Consensus 168 g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (558)
+|.+++++.+..|||+.|++.++..++..+......| ++++++++ +++
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------------~~~---------- 187 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP---ETRPVDAP-------------------RTR---------- 187 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC---CCSTTTCC-------------------CCC----------
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc---ccCCCCcc-------------------ccc----------
Confidence 9999999999899999999877665544432221111 11110000 000
Q ss_pred cccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccceee
Q 008651 248 EAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTFCI 327 (558)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (558)
....++ +..++++.....+................ +.+.
T Consensus 188 ------------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 226 (375)
T 2gfp_A 188 ------------------------------------LLTSYK----TLFGNSGFNCYLLMLIGGLAGIAAFEACS-GVLM 226 (375)
T ss_dssp ------------------------------------TTTCST----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCSS
T ss_pred ------------------------------------HHHHHH----HHhcCcchHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 000010 00112221111221222222222222222 2222
Q ss_pred eecccccccccccccCCCCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHH-HHHHHH--HHHHHH
Q 008651 328 QQSTTMDRNLFGFKVPGPSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVL-SAVSMA--VAAVVE 404 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l-~~i~~l--~~~~~~ 404 (558)
.+..+.+.. ..+.+.....+..+++.++.+++.||.+++ +..+..+ ...+.. ......
T Consensus 227 ~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 2gfp_A 227 GAVLGLSSM------TVSILFILPIPAAFFGAWFAGRPNKRFSTL-------------MWQSVICCLLAGLLMWIPDWFG 287 (375)
T ss_dssp HHHHHHHHH------HHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-------------HHHHHHHHHHTSSSSSHHHHHH
T ss_pred HHHhCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhhc
Confidence 221111111 122333444556666666777776665543 3333333 222222 122111
Q ss_pred HHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008651 405 TKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVE 484 (558)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~ 484 (558)
..+.+..+...++.+++.+...+....+..+..| +.||+++|+.+....+|..+++.+.+
T Consensus 288 -------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 288 -------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred -------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1144555667788899999989999999999999 88999999999999999888888777
Q ss_pred Hhh
Q 008651 485 IVN 487 (558)
Q Consensus 485 ~i~ 487 (558)
.+.
T Consensus 348 ~l~ 350 (375)
T 2gfp_A 348 MLP 350 (375)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=1.4e-23 Score=220.77 Aligned_cols=372 Identities=10% Similarity=0.036 Sum_probs=215.2
Q ss_pred hhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHhhhccc
Q 008651 9 FVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAIL---AIQAHAHQ 85 (558)
Q Consensus 9 ~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~ 85 (558)
+....++++.|+++++|+|+.+.|++.+.+.++..++++++|+++|| +||||+++++.++..++.... .++..
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--- 98 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPL--- 98 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33445678999999999999999999999999999999999999999 799999999887765532222 12110
Q ss_pred cCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHH
Q 008651 86 LRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGS 165 (558)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 165 (558)
....++.++++.+++.|...+...+...+..++.. .+++..++..+...++|.
T Consensus 99 -----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~ 151 (417)
T 2cfq_A 99 -----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCVGW 151 (417)
T ss_dssp -----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTTHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHHHH
Confidence 00012345555555555555555555555443221 125677777777889999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcccccccCCCCChhHHHHHHHHHHHhhCCCCCCCccchhhhhc
Q 008651 166 IIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKSLYRHNVPKGSPIIRILQVFVAAIHNRNLPKPEMADQLHEIH 245 (558)
Q Consensus 166 ~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (558)
.++|.+++++.+ .+|++.|++.++..++..+..+..++ ++++..+ .++.
T Consensus 152 ~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~------------------~~~~-------- 200 (417)
T 2cfq_A 152 ALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSAT------------------VANA-------- 200 (417)
T ss_dssp HHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSC------------------SSSS--------
T ss_pred HHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccc------------------cccc--------
Confidence 999999999876 58999998766553333222211111 1110000 0000
Q ss_pred cccccccccccccccchhhhhHhhhhcccCCCCCCcCCCCCCCcccchhhhHHHHHHHhhHHHHHHHHHHHHHhhcccce
Q 008651 246 DREAGLDTEILKRTDQFRFLDRAAITRTACDGRASTSINPGPWRLCTVTQVEETKILLRMLPIIVSTLFMNTCLAQLQTF 325 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 325 (558)
++ ++ .++.+..+..... ++++.. ............+..+.+..+.
T Consensus 201 -~~-----~~---~~~~~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 201 -VG-----AN---HSAFSLKLALELF-------------------------RQPKLW-FLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp -SS-----SC---CCCCCHHHHHHHT-------------------------TCHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cc-----cc---cccccHHHHHHHh-------------------------cCCchh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0000000000000 111111 1111111111111122111111
Q ss_pred eeeecccccccccccccCC---CCCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008651 326 CIQQSTTMDRNLFGFKVPG---PSLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAV 402 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~ 402 (558)
+..+. .... +... +....++.+..+++..+.+++.||++|| +.+..+.++++++++....
T Consensus 246 ~~~~~--~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 246 FFTSF--FATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHT--SSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHH--Hhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 11110 0100 0001 1223334445566778889999999888 4566777777776555432
Q ss_pred HHHHHhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHH-HHHHHHHHHHHHHH
Q 008651 403 VETKRKSVAVEHNMVDSIEPLPMSVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAI-SWCSIAFGYFLSSL 481 (558)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~ 481 (558)
. .+.+.+++..++.+++.....+..+.+..|..|++.||++.++ .++.+.+|+.+++.
T Consensus 309 ~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 309 A---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp C---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred h---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 1 1344455555666777666667778899999999999999998 48888899999999
Q ss_pred HHHHhhhccCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008651 482 VVEIVNKVSGGWLASNNLNRDKLNYFYWLLAGISVLNFGFYLACAS 527 (558)
Q Consensus 482 l~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 527 (558)
+.|.+.+ . .++...|++.+++++++.++.++..+
T Consensus 368 l~G~l~~---------~---~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 368 LAGNMYE---------S---IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHTHHH---------H---SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHH---------h---cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9997752 1 12445567777777777776555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.34 E-value=5.9e-12 Score=132.33 Aligned_cols=166 Identities=13% Similarity=0.117 Sum_probs=139.8
Q ss_pred chhhhhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhccc--CchHHHHHHHHHHH-HHHHHHHHh
Q 008651 4 LESMSFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYL--SRFKTCVLFGCIEL-LGLAILAIQ 80 (558)
Q Consensus 4 ~~~~~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~l~~~~~~~~-~~~~~~~~~ 80 (558)
+..++++++..+++.|+++.+|++..+.+++.+.+.++..++.++.|+++|| + |||+.+..+.++.. ++.+++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 3446677888899999998899999999999999999999999999999999 8 99999888876666 555544432
Q ss_pred hhccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHH
Q 008651 81 AHAHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFS 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (558)
. ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++++..
T Consensus 342 ~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 390 (451)
T 1pw4_A 342 P-------------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLF 390 (451)
T ss_dssp C-------------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHH
T ss_pred c-------------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHH
Confidence 1 1145667778888999999988989999999999886 99999999999
Q ss_pred HHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Q 008651 161 LTV-GSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIM 201 (558)
Q Consensus 161 ~~i-g~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 201 (558)
.++ |..++|.+.+++.+..||+..|++.++..+++.++.+.
T Consensus 391 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999888776666655544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.21 E-value=1e-10 Score=122.47 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=127.1
Q ss_pred hhhhhhhHHHHHHH-hhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 008651 6 SMSFVANMVSLVTY-FHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAH 84 (558)
Q Consensus 6 ~~~~y~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 84 (558)
...+++...+++.| +++.+|++..++++..+.+.++..++.+++|+++|| +|||+.+..+.++..++.+++.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--- 346 (438)
T 3o7q_A 271 VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG--- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC---
Confidence 34566777889999 888889999999999999999999999999999999 7999999999988888887777653
Q ss_pred ccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHH
Q 008651 85 QLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVG 164 (558)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 164 (558)
+... .+..++.|++.+...|...++..|.+|++ ++.+.++.. ...+|
T Consensus 347 ------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 347 ------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIG 393 (438)
T ss_dssp ------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHH
T ss_pred ------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHH
Confidence 2323 34447888999999999999999998854 566666655 56799
Q ss_pred HHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHH
Q 008651 165 SIIGVTFIVWISTNQG-WDWSFGVCTIAVLFATV 197 (558)
Q Consensus 165 ~~~g~~~~~~l~~~~g-w~~~f~i~~~~~~~~~~ 197 (558)
..++|.+.|++.+..| ++..|++.++..++..+
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999998 99999987655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.14 E-value=7.5e-11 Score=123.41 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=119.0
Q ss_pred hHHHHHHHhhhhcCC---CchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008651 12 NMVSLVTYFHGYMNF---SLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRP 88 (558)
Q Consensus 12 ~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (558)
....++.|+.+.++. +..+.++..+...++..++.+++|+++|| +|||+.+..+.++..++.++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT------- 310 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 334567787666652 34455777777778888899999999999 7999999988877777665554421
Q ss_pred CCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHH-HHHHHHHHHHH
Q 008651 89 KPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNW-FLFSLTVGSII 167 (558)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~ 167 (558)
+.+.+++...+.+++.+...+....++.|.+|++. |+++.++ ++....+|.++
T Consensus 311 --------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 311 --------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp --------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHH
Confidence 34556666777777777777777889999999875 8999888 47777899999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Q 008651 168 GVTFIVWISTNQGWDWSFGVCTIAVLFATVFVI 200 (558)
Q Consensus 168 g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 200 (558)
+|.++|++.+..|++..|.+.++..+++.++.+
T Consensus 365 gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999888999999887777666655543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.98 E-value=1.3e-09 Score=115.93 Aligned_cols=171 Identities=11% Similarity=0.027 Sum_probs=128.8
Q ss_pred hhhhhHHHHHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHH-----HHHHHHHHHHHHHHHhhh
Q 008651 8 SFVANMVSLVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCV-----LFGCIELLGLAILAIQAH 82 (558)
Q Consensus 8 ~~y~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-----~~~~~~~~~~~~~~~~~~ 82 (558)
.++.....++.|+.+.++.+..+.++..+...++..++.++.|++.|| +|||+... .+.++..++.+++.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888888888888888999999999999999999999999 79986655 677777777666665431
Q ss_pred ccccCCCCCCCCCCCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHH
Q 008651 83 AHQLRPKPCVGVAPNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLT 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (558)
.. ....+.+.+.+.+..++.|+|.+...+...+++.|.+|++. |+++.++++...+
T Consensus 377 ~~------------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 432 (491)
T 4aps_A 377 LY------------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSS 432 (491)
T ss_dssp HC------------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHH
T ss_pred hc------------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 10 00011245567778889999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 008651 163 VGSIIGVTFIVWISTNQGWDWSFGVCTIAVLFATVFVIMGKS 204 (558)
Q Consensus 163 ig~~~g~~~~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 204 (558)
+|..+++.+.+++.+ .++...|++.+...+++.++.+...+
T Consensus 433 ~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 433 VGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 46777787776665555555544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.87 E-value=4.6e-08 Score=103.84 Aligned_cols=161 Identities=9% Similarity=-0.044 Sum_probs=114.1
Q ss_pred HHHHhhhhcCCCchhhhHHHHHHHHHHHHHhhHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 008651 16 LVTYFHGYMNFSLTKSATTLTNFTGTAFLLALFGGFISDTYLSRFKTCVLFGCIELLGLAILAIQAHAHQLRPKPCVGVA 95 (558)
Q Consensus 16 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (558)
...++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+.++......
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~----------- 366 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ----------- 366 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcc-----------
Confidence 3445667788888888888888888999999999999999 7999999999988888877776553211
Q ss_pred CCCcCcCCCCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008651 96 PNLVNQCDDADGTQVAILFTGLYLFACGTGGVKAALPSLGADQFDERDPKEAAKFSSFFNWFLFSLTVGSIIGVTFIVWI 175 (558)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 175 (558)
.+.......+.....+++ .+..|....+.+|.+|.+. |+++.++.....++|.++++.+.+.+
T Consensus 367 ----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 367 ----------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp ----------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ----------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222222222222 3344677889999999998 99999999999999999998877666
Q ss_pred cc------ccchhhHHHHHHHHHHHHHHHHHHhccc
Q 008651 176 ST------NQGWDWSFGVCTIAVLFATVFVIMGKSL 205 (558)
Q Consensus 176 ~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 205 (558)
.+ ..++...|++.+.+.+++.++.++..|+
T Consensus 430 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 430 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 43 2456667777776666666655554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.56 E-value=5.4e-08 Score=99.53 Aligned_cols=138 Identities=14% Similarity=-0.017 Sum_probs=107.1
Q ss_pred CCCCcChhHHHHHHhhhhhhhhhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccc
Q 008651 346 SLPVIPLVFMFILVPIYDRVFIPIARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPM 425 (558)
Q Consensus 346 ~~~~~~~~~~~i~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (558)
.......+...++.++.+++.||++||+ .+..+..+.+++.+.....+
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------------- 86 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRP-----------VILVGMSIFMLATLVAVTTS--------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCC-----------CCHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHhc---------------------
Confidence 3455556777889999999999999983 36678888888887777653
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcchhH
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAISWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRDKLN 505 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~ 505 (558)
+.+.++...++.|++.+...+....++.|..|++.|++.+++.+....+|..+++.+.+.+.+ ..++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------------~~~~~ 154 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------------MWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC------------HHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------hccHH
Confidence 566777788999999999999999999999999999999999999999999999999887641 12355
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 008651 506 YFYWLLAGISVLNFGFYLACAS 527 (558)
Q Consensus 506 ~~f~~~~~~~~v~~~~~~~~~~ 527 (558)
..|++.+++.++..+..++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCc
Confidence 5566666666665553333333
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.44 E-value=3.4e-07 Score=98.08 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=101.5
Q ss_pred CCCcChhHHHHHHhhhhhhhhhh-hhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCccc
Q 008651 347 LPVIPLVFMFILVPIYDRVFIPI-ARKITGIPTGIRQLQRIGVGLVLSAVSMAVAAVVETKRKSVAVEHNMVDSIEPLPM 425 (558)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~l~~~~-~~r~~~~~~~~~~~~~~~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (558)
+.....+...++.++.+++.||+ +|| +.+.++.++.+++.++.... +.
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------~~ 107 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF--------------------EH 107 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------cc
Confidence 34445666778888999999999 988 55778888888887776653 11
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhchhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccCCcccCCCCCcc
Q 008651 426 SVFWLGFQYAIFGAADMFTLVGLLDFFYAESSAGMKSLSTAI---SWCSIAFGYFLSSLVVEIVNKVSGGWLASNNLNRD 502 (558)
Q Consensus 426 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~ 502 (558)
+.+.+++..++.|++.+...|....++.+.+|++.|++..+. .+....+|..+++.+.+.+.+ . .
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~---~ 175 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---------N---F 175 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---------T---S
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------c---c
Confidence 566677788999999999999999999999999999877666 777888888888888776642 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 008651 503 KLNYFYWLLAGISVLNFGFYLAC 525 (558)
Q Consensus 503 ~~~~~f~~~~~~~~v~~~~~~~~ 525 (558)
++...|++.+++.++..+..++.
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 24556676676666665554443
Done!