BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008652
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis
thaliana GN=SIGF PE=1 SV=1
Length = 547
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 313/572 (54%), Positives = 400/572 (69%), Gaps = 39/572 (6%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSA------SSSSSSSVASVPTSSVARHFPTSVLL 54
MEA RNL+SS PSF ++T +K S SS + +++ V S +S++RHFP SVL
Sbjct: 1 MEATRNLVSSSPSFQTKTHLKSSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFPASVLS 60
Query: 55 QEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QDLEHQF 109
QE R+E RPL H ++D+TSQ T + R D+LV + E Q
Sbjct: 61 QEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEKFEQQL 105
Query: 110 LHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 167
LH LWNL SP + P+V + DAE D VALA+KALSASK+AA
Sbjct: 106 LHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSASKQAA 155
Query: 168 SLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYN 226
L ++ + N ++ D TSS E+ R LERR+K R+ K + E Y
Sbjct: 156 LLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYV 215
Query: 227 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 286
+K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+S
Sbjct: 216 PQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 275
Query: 287 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 346
Q G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ D
Sbjct: 276 QNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 335
Query: 347 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 406
LLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLPEN+Y LL KV
Sbjct: 336 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 395
Query: 407 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEIT 466
EA++ +QEGN+ P KE+LA VG++ EKL++L++ TR PLSMQQP+W+DQDTTFQEIT
Sbjct: 396 SEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEIT 455
Query: 467 ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 526
D+G+E P +SV KQLMR HVRNLL +L+PKER I++LRFGI+ GK +SLSE+G I+GLS
Sbjct: 456 PDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLS 515
Query: 527 KERVRQLESRALYRLKQSLGGKASYGYADLLI 558
KERVRQLESRALYRLKQ++ + YADLL+
Sbjct: 516 KERVRQLESRALYRLKQNMNSHGLHAYADLLV 547
>sp|P26683|RPOD_NOSS1 RNA polymerase sigma factor RpoD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rpoD PE=3 SV=1
Length = 390
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 220/349 (63%), Gaps = 14/349 (4%)
Query: 195 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 254
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQTDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 255 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 314
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHI 150
Query: 315 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 374
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 375 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 434
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 270
Query: 435 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 494
EKL + ++P+S++ P+ ++D+ + G E P+ V K L+R+ + +L L
Sbjct: 271 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSL 329
Query: 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
+P+ER ++RLR+G++DG+ K+L E+G IF +++ER+RQ+E++AL +L+
Sbjct: 330 SPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 378
>sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB
PE=2 SV=2
Length = 572
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 215/343 (62%), Gaps = 5/343 (1%)
Query: 203 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 261
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 262 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 321
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 322 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 381
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 382 IRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERL 440
+RK++ SR IRLP ++ +V EA K+LY + G H P E++A G+++++L +
Sbjct: 396 VRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKH-PKNEEIAEATGLSMKRLMAV 454
Query: 441 IFITRMPLSMQQPVWADQDTTFQEITAD-TGVEIPDISVQKQLMRQHVRNLLTLLNPKER 499
+ + P S+ Q + +Q+ E+ AD V DI + K+ MRQ + +L L +E+
Sbjct: 455 LLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILI-KEFMRQDLDKVLDSLGTREK 513
Query: 500 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542
++R RFG+EDG+ K+L E+G + G+S+ERVRQ+ES A +LK
Sbjct: 514 QVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 556
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 199/299 (66%), Gaps = 1/299 (0%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 303
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 304 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 363
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 364 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 423
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 424 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 483
E++A R+ +T+EKL + ++P+S++ P+ ++D+ + G E P+ V K L+
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVAKNLL 327
Query: 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542
R+ + +L+ L+P+ER ++RLR+G++DG+ K+L E+G +F +++ER+RQ+E++AL +L+
Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor RpoD OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpoD PE=3 SV=1
Length = 425
Score = 225 bits (574), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 209/359 (58%), Gaps = 49/359 (13%)
Query: 228 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 287
RK +VKKK D +R++L +LL A+EE EL QI DL+ LE + L Q
Sbjct: 59 RKDAVKKKPYT----EDSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTLQ 114
Query: 288 FGREPTLIEWAKAI----------------GLSCRDLKSELHSGNS-------------- 317
R+P+ +EW K + +D+ S L + ++
Sbjct: 115 LERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPNK 174
Query: 318 --------------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 363
+++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 175 NFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 234
Query: 364 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 423
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 235 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTE 294
Query: 424 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 483
E++A ++ +T+EKL + ++P+S++ P+ ++D+ + G E P+ V K L+
Sbjct: 295 EEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLL 353
Query: 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542
R+ + N+L L+P+ER ++RLR+G++DG+ K+L E+G IF +++ER+RQ+E++AL +L+
Sbjct: 354 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412
>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa
GN=rpoD1 PE=3 SV=1
Length = 416
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 201/339 (59%), Gaps = 40/339 (11%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 279
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 280 ----EKSK-------LQSQFGR----EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 324
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 325 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 384
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 385 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 444
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 445 RMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRL 504
++P+S++ P+ ++D+ + G E P+ V K L+R+ + N+L L+P+ER ++RL
Sbjct: 307 QLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 505 RFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
R+G++DG+ K+L E+G IF +++ER+RQ+E++AL +L+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404
>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD2 PE=1 SV=1
Length = 320
Score = 219 bits (557), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 187/299 (62%), Gaps = 1/299 (0%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 303
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 304 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 363
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFD 130
Query: 364 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 423
P G +F++YAYWW+RQ I +AI Q SRTIRLP +I L+K+ + +R Q+ S
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATA 190
Query: 424 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 483
+LA + + +E++ I + R P+S+ V QDT QE+ D P V+++ +
Sbjct: 191 SELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSS-PSDYVEQESL 249
Query: 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542
R+ +RNL+ L P+++ ++ LR+G+++G SL++VG +S+ERVR+LE +A+ L+
Sbjct: 250 RRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLR 308
>sp|Q03066|RPSC_NOSS1 RNA polymerase sigma-C factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigC PE=3 SV=2
Length = 416
Score = 208 bits (529), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 190/344 (55%), Gaps = 44/344 (12%)
Query: 243 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 281
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 282 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 319
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 320 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 379
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 380 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 439
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVRE 298
Query: 440 LIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKER 499
++ +S++ V D+DT E+ GV P+ + ++ +++ +++LL L +ER
Sbjct: 299 VLLRVPRSVSLETKVGKDKDTELGELLETDGV-TPEEMLMRESLQRDLQHLLADLTSRER 357
Query: 500 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
++ +RFG+ DG P SL+E+G LS+ERVRQ+ES+AL +L+Q
Sbjct: 358 DVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQ 401
>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD3 PE=3 SV=1
Length = 320
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 188/303 (62%), Gaps = 2/303 (0%)
Query: 243 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 301
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 302 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 361
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 128
Query: 362 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 421
F P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ + +R Q+ +
Sbjct: 129 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTA 188
Query: 422 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQ 481
+LA + +T ++ + R PLS+ V +QDT ++ +T P+ +
Sbjct: 189 TLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELGDLL-ETDCTTPEEFTLQA 247
Query: 482 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 541
MR+ + LL L ++R ++ LR+G+EDG+ +L+ +G+ +S+ERVRQLE AL+ L
Sbjct: 248 SMRRDIDRLLDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTL 307
Query: 542 KQS 544
+Q+
Sbjct: 308 RQA 310
>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sigC PE=3 SV=1
Length = 404
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 189/341 (55%), Gaps = 43/341 (12%)
Query: 243 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 283
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 48 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 107
Query: 284 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 320
L Q G P+ WAK +G + LK L SG +++
Sbjct: 108 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 167
Query: 321 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 380
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+RQ
Sbjct: 168 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQ 227
Query: 381 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 440
I +AI SR IRLP +I L+K+ A+R QE H+P +++A +G+T E++ +
Sbjct: 228 GITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREV 287
Query: 441 IFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERC 500
+ +S++ V D+DT ++ +T + P+ + ++ ++ ++ +L L P+E+
Sbjct: 288 LTQVPRSVSLELKVGQDKDTELMDLL-ETDTQSPEDELMREALQNDMQEILLDLTPREQE 346
Query: 501 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 541
++ LRFG +DG SLSE+G I LS+ERVRQ+E++AL +L
Sbjct: 347 VIALRFGFQDGVAHSLSEIGRILNLSRERVRQIEAKALQKL 387
>sp|P77994|RPOD_THEMA RNA polymerase sigma factor RpoD OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpoD PE=1
SV=3
Length = 399
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 160/239 (66%), Gaps = 1/239 (0%)
Query: 306 RDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 364
R+L G+ ++EKLI +NLRLVV +AK+Y GRG+S DL+QEG++GL+K+VEKF
Sbjct: 142 RELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDW 201
Query: 365 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 424
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K+ +R Y Q+ P E
Sbjct: 202 RKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIE 261
Query: 425 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 484
+LA+ +G EK++ ++ + +S++ P+ D+D++ ++ AD + P + LMR
Sbjct: 262 ELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMR 321
Query: 485 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
+ + +L L+P+E ++R+R+G+ DGKPK+L EVG F +++ER+RQ+E +AL +L+
Sbjct: 322 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 380
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=rpoD PE=3 SV=1
Length = 585
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 183/286 (63%), Gaps = 8/286 (2%)
Query: 271 IQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 329
I+D+ E++ +++ + G I +W + I R++ + ++++L+ ANLRL
Sbjct: 306 IKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREI-------SQAKKELVKANLRL 358
Query: 330 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 389
VV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +F++YA WW+RQ I +AI
Sbjct: 359 VVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQ 418
Query: 390 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 449
+RTIR+P ++ ++KV+ RL+IQE P+ E++A R+G V+K++ + + R P+S
Sbjct: 419 ARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPIS 478
Query: 450 MQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIE 509
++ PV +++D+ + DT VE P + ++ + +R +L L +E+ ++R+RFG++
Sbjct: 479 LEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLD 538
Query: 510 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 555
DG P++L EVG F +++ER+RQ+E++AL RL+ K Y D
Sbjct: 539 DGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=rpoD PE=3 SV=1
Length = 585
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 183/286 (63%), Gaps = 8/286 (2%)
Query: 271 IQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 329
I+D+ E++ +++ + G I +W + I R++ + ++++L+ ANLRL
Sbjct: 306 IKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREI-------SQAKKELVKANLRL 358
Query: 330 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 389
VV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +F++YA WW+RQ I +AI
Sbjct: 359 VVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQ 418
Query: 390 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 449
+RTIR+P ++ ++KV+ RL+IQE P+ E++A R+G V+K++ + + R P+S
Sbjct: 419 ARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPIS 478
Query: 450 MQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIE 509
++ PV +++D+ + DT VE P + ++ + +R +L L +E+ ++R+RFG++
Sbjct: 479 LEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLD 538
Query: 510 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 555
DG P++L EVG F +++ER+RQ+E++AL RL+ K Y D
Sbjct: 539 DGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
>sp|Q03065|RPSB_NOSS1 RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigB PE=3 SV=1
Length = 332
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 186/317 (58%), Gaps = 1/317 (0%)
Query: 226 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 285
S+ +K K +E D + ++L LL+ ++E Q+Q ++ + K +L
Sbjct: 5 TSQVTKLKSKNNEFSYTADAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELA 64
Query: 286 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 345
+ REPTL EWA + L L +L G +++K+I ANLRLVV +AK+YQ R +
Sbjct: 65 EKLQREPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFL 124
Query: 346 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 405
DL+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q SRTIRLP ++ L+K
Sbjct: 125 DLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNK 184
Query: 406 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 465
+ +R Q+ + ++A+ + + ++ + + R P+S+ + +QDT Q++
Sbjct: 185 IKCVQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDL 244
Query: 466 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 525
D G+ P+ +++L+ Q + NLL L P+++ ++ LRFG+ G +L ++ G+
Sbjct: 245 LKDDGMS-PERYAERELLYQDIHNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGI 303
Query: 526 SKERVRQLESRALYRLK 542
S+ERVRQ+E +AL L+
Sbjct: 304 SRERVRQVEKQALTLLR 320
>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor RpoD OS=Chlamydia pneumoniae GN=rpoD
PE=3 SV=1
Length = 572
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 168/265 (63%), Gaps = 4/265 (1%)
Query: 293 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 352
TL E+ K + R L+ + ++++++ +NLRLV+ +AK+Y RG+S DL+QEG+
Sbjct: 296 TLEEFKKDV----RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGN 351
Query: 353 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 412
MGLMK+VEKF+ + G +F++YA WW+RQ + +AI +RTIR+P ++ ++KVL +
Sbjct: 352 MGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKK 411
Query: 413 YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 472
+ E P E+LA +G+T +++ + I + P+S+Q V +++F + DT VE
Sbjct: 412 LMMETGKEPTPEELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVE 471
Query: 473 IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532
P + +++ ++ +L L +ER ++ RFG+ DGKPK+L EVG+ F +++ER+RQ
Sbjct: 472 SPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQ 531
Query: 533 LESRALYRLKQSLGGKASYGYADLL 557
+E++AL +++ + K + DLL
Sbjct: 532 IEAKALRKMRHPIRSKQLRAFLDLL 556
>sp|O66381|RPOD_BACHD RNA polymerase sigma factor RpoD OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=sigA PE=3 SV=2
Length = 372
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 172/304 (56%), Gaps = 40/304 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LLTA+EE EL +I+
Sbjct: 96 GVKINDPVRMYLKEIGRVPLLTAEEEIELATRIE-------------------------- 129
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 130 --------------QGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 175
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 176 VEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 235
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++A + +T EK+ ++ I + P+S++ P+ + D+ + D P +
Sbjct: 236 REPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAA 295
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 296 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 539 YRLK 542
+L+
Sbjct: 356 RKLR 359
>sp|P52328|RPSD2_BACSP RNA polymerase sigma factor RpoD OS=Bacillus sp. GN=sigA PE=3 SV=1
Length = 377
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 174/308 (56%), Gaps = 40/308 (12%)
Query: 236 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 295
L G NDP+R++L LL+AD+E EL +I
Sbjct: 98 LPPGIKINDPVRMYLKEIGRVPLLSADDEVELAKRI------------------------ 133
Query: 296 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 355
++ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL
Sbjct: 134 ----------------MNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGL 177
Query: 356 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 415
+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 178 IKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 237
Query: 416 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPD 475
E P E++A + ++VEK+ ++ I + P+S++ P+ + D+ + D P
Sbjct: 238 ELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPA 297
Query: 476 ISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535
+ +L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E+
Sbjct: 298 DAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA 357
Query: 536 RALYRLKQ 543
+AL +L+
Sbjct: 358 KALRKLRH 365
>sp|P52329|RPOD_ENTFA RNA polymerase sigma factor RpoD OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=rpoD PE=3 SV=2
Length = 368
Score = 195 bits (496), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 172/304 (56%), Gaps = 40/304 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L +LLTA EE EL +I++
Sbjct: 92 GVKINDPVRMYLKEIGRVQLLTAAEEVELALKIEE------------------------- 126
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++++L ANLRLVV +AK+Y GRG+ DL+QEG+MGLMK+
Sbjct: 127 ---------------GDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D P
Sbjct: 232 REPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLK 542
+L+
Sbjct: 352 RKLR 355
>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor HrdA OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdA
PE=3 SV=2
Length = 396
Score = 195 bits (495), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 157/241 (65%)
Query: 315 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 374
G ++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF G +F++YA
Sbjct: 156 GRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 215
Query: 375 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 434
WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P +++A + +
Sbjct: 216 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAP 275
Query: 435 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 494
E++ ++ + + P+S+ PV + D ++ D P S L+RQH+ +L+ L
Sbjct: 276 ERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTL 335
Query: 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYA 554
+ER +V+LR+G+ DG+P++L E+G +FG+++ER+RQ+ES+ L +L+ GY
Sbjct: 336 GERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGYL 395
Query: 555 D 555
D
Sbjct: 396 D 396
>sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1
Length = 369
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 184/328 (56%), Gaps = 50/328 (15%)
Query: 216 KPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 275
+P++++ + S A V NDP+R++L LLT +EE EL
Sbjct: 79 EPELSDEDLIGSTSAKV----------NDPVRMYLKEIGVVPLLTNEEEKEL-------- 120
Query: 276 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 335
A+ + D+++ +++L ANLRLVV +AK
Sbjct: 121 ------------------------ALAVEAGDIEA--------KQRLAEANLRLVVSIAK 148
Query: 336 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 395
+Y GRG+ DL+QEG+MGLMK+V+KF G +F++YA WW+RQ I +AI +RTIR+
Sbjct: 149 RYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRI 208
Query: 396 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 455
P ++ ++K++ +R +QE P E +A R+ +T +K+ ++ I + P+S++ P+
Sbjct: 209 PVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIG 268
Query: 456 ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 515
+ D+ + D +E P + ++R+ + +L L +E ++RLRFG++DGK ++
Sbjct: 269 EEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRT 328
Query: 516 LSEVGNIFGLSKERVRQLESRALYRLKQ 543
L +VG +F +++ER+RQ+E++AL +L+Q
Sbjct: 329 LEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rpoD PE=3
SV=1
Length = 369
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 184/328 (56%), Gaps = 50/328 (15%)
Query: 216 KPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 275
+P++++ + S A V NDP+R++L LLT +EE EL
Sbjct: 79 EPELSDEDLIGSTSAKV----------NDPVRMYLKEIGVVPLLTNEEEKEL-------- 120
Query: 276 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 335
A+ + D+++ +++L ANLRLVV +AK
Sbjct: 121 ------------------------ALAVEAGDIEA--------KQRLAEANLRLVVSIAK 148
Query: 336 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 395
+Y GRG+ DL+QEG+MGLMK+V+KF G +F++YA WW+RQ I +AI +RTIR+
Sbjct: 149 RYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRI 208
Query: 396 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 455
P ++ ++K++ +R +QE P E +A R+ +T +K+ ++ I + P+S++ P+
Sbjct: 209 PVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIG 268
Query: 456 ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 515
+ D+ + D +E P + ++R+ + +L L +E ++RLRFG++DGK ++
Sbjct: 269 EEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRT 328
Query: 516 LSEVGNIFGLSKERVRQLESRALYRLKQ 543
L +VG +F +++ER+RQ+E++AL +L+Q
Sbjct: 329 LEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor HrdB OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdB
PE=3 SV=2
Length = 511
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 181/300 (60%), Gaps = 13/300 (4%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 303
DP++ +L LL A++E EL +I+ + E KL + P L
Sbjct: 213 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAE---DKLANSDKLAPKL--------- 260
Query: 304 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 363
R+L+ G ++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 261 -KRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 319
Query: 364 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 423
G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+ P
Sbjct: 320 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 379
Query: 424 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 483
E+LA+ + +T EK+ + R P+S+ P+ D D+ F ++ D+ +P +V L+
Sbjct: 380 EELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLL 439
Query: 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
++ + ++L L+ +E +V +RFG+ DG+PK+L E+G ++G+++ER+RQ+ES+ + +L+
Sbjct: 440 QEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRH 499
>sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor HrdB OS=Streptomyces griseus
GN=hrdB PE=1 SV=1
Length = 514
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 181/300 (60%), Gaps = 13/300 (4%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 303
DP++ +L LL A++E EL +I+ + E KL + P L
Sbjct: 216 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAE---DKLANADKLAPKL--------- 263
Query: 304 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 363
R+L+ G ++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 264 -KRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 322
Query: 364 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 423
G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+ P
Sbjct: 323 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 382
Query: 424 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 483
E+LA+ + +T EK+ + R P+S+ P+ D D+ F ++ D+ +P +V L+
Sbjct: 383 EELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLL 442
Query: 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
++ + ++L L+ +E +V +RFG+ DG+PK+L E+G ++G+++ER+RQ+ES+ + +L+
Sbjct: 443 QEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRH 502
>sp|P06224|RPOD_BACSU RNA polymerase sigma factor RpoD OS=Bacillus subtilis (strain 168)
GN=sigA PE=1 SV=2
Length = 371
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 179/298 (60%), Gaps = 20/298 (6%)
Query: 253 PETRKLLTADEEFELI-------AQIQDLIRLE-KEKSKLQSQFGREPTLIEWAKAIGLS 304
P ++L A+EEF+L +I D +R+ KE ++ +E I +A+ I
Sbjct: 73 PNIQQLAKAEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVNLLSAKEE--IAYAQKIE-- 128
Query: 305 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 364
S+ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGLMK+VEKF
Sbjct: 129 --------EGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDY 180
Query: 365 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 424
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E
Sbjct: 181 RKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPE 240
Query: 425 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 484
++A + +T EK+ ++ I + P+S++ P+ + D+ + D P +L++
Sbjct: 241 EIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLK 300
Query: 485 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542
+ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL +L+
Sbjct: 301 EQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 358
>sp|P33118|RPSB_CORDI RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=sigB PE=3 SV=2
Length = 329
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 177/311 (56%), Gaps = 12/311 (3%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 303
D +R++L G LL A++E EL I+ L +++ E + +A+
Sbjct: 30 DLVRVYLNGIGKTALLNAEDEVELAQTIE---------VGLYAEYLLENSQEPLTRAM-- 78
Query: 304 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 363
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 79 -KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 364 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 423
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q+
Sbjct: 138 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATN 197
Query: 424 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 483
E+LA GI K+E L+ +R P+S+ PV AD++ + D+ + +V L
Sbjct: 198 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLR 257
Query: 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
+R +L L +E+ ++RLR+G++DG P++L ++G FGLS+ERVRQ+E + +L+
Sbjct: 258 HSDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRD 317
Query: 544 SLGGKASYGYA 554
+ YA
Sbjct: 318 GARAEKLRAYA 328
>sp|P56835|RPOD_CHLMU RNA polymerase sigma factor RpoD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=rpoD PE=3 SV=1
Length = 571
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 166/265 (62%), Gaps = 4/265 (1%)
Query: 293 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 352
TL E+ K + R L+ + ++++++ +NLRLV+ +AK+Y RG+S DL+QEG+
Sbjct: 296 TLEEFKKDV----RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGN 351
Query: 353 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 412
MGLMK+VEKF+ + G +F++YA WW+RQ + +AI +RTIR+P ++ ++KVL +
Sbjct: 352 MGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKK 411
Query: 413 YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 472
+ E P E+L +G T +++ + I + P+S+Q V +++F + DT VE
Sbjct: 412 LMMETGKEPTPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVE 471
Query: 473 IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532
P + +++ ++ +L L +ER ++ RFG+ DG+PK+L EVG+ F +++ER+RQ
Sbjct: 472 SPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQ 531
Query: 533 LESRALYRLKQSLGGKASYGYADLL 557
+E++AL +++ + K + DLL
Sbjct: 532 IEAKALRKMRHPIRSKQLRAFLDLL 556
>sp|O33662|RPOD_STRMU RNA polymerase sigma factor RpoD OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpoD PE=3 SV=1
Length = 371
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 191/367 (52%), Gaps = 68/367 (18%)
Query: 177 GAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL 236
G TD S Y +EE+K ++T+ E S A V
Sbjct: 60 GISITDREGNPSTKYAVEEIK------------------PEELTDEELLGSNSAKV---- 97
Query: 237 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 296
NDP+R++L LLT +EE EL
Sbjct: 98 ------NDPVRMYLKEIGVVPLLTNEEEKEL----------------------------- 122
Query: 297 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 356
AI + DL++ +++L ANLRLVV +AK+Y GRG+ DL+QEG+MGLM
Sbjct: 123 ---AIAVENGDLEA--------KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLM 171
Query: 357 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 416
K+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE
Sbjct: 172 KAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQE 231
Query: 417 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDI 476
P E +A R+ +T +K+ ++ I + P+S++ P+ + D+ + D +E P
Sbjct: 232 LGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVD 291
Query: 477 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536
+ ++R+ + +L L +E ++RLRFG++DGK ++L +VG +F +++ER+RQ+E++
Sbjct: 292 YTTRVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAK 351
Query: 537 ALYRLKQ 543
AL +L+
Sbjct: 352 ALRKLRH 358
>sp|P27785|RPOD_STRAU RNA polymerase sigma factor RpoD OS=Streptomyces aureofaciens
GN=rpoD PE=3 SV=1
Length = 317
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 160/249 (64%)
Query: 307 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 366
DL + G ++ +LI +NLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 69 DLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 128
Query: 367 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 426
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE + P E++
Sbjct: 129 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEV 188
Query: 427 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQH 486
A + +T E++ ++ + + P+S+ PV + D ++ D P S L +H
Sbjct: 189 AVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEH 248
Query: 487 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546
+ +L+ L +ER +V+LR+G+ DG+P++L E+G IFG+++ER+RQ+ES+ L +L+
Sbjct: 249 LEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAF 308
Query: 547 GKASYGYAD 555
GY D
Sbjct: 309 ADQLRGYLD 317
>sp|P18333|RPOD_CHLTR RNA polymerase sigma factor RpoD OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpoD PE=3 SV=2
Length = 571
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 166/265 (62%), Gaps = 4/265 (1%)
Query: 293 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 352
TL E+ K + R L+ + ++++++ +NLRLV+ +AK+Y RG+S DL+QEG+
Sbjct: 296 TLEEFKKDV----RMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGN 351
Query: 353 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 412
MGLMK+VEKF+ + G +F++YA WW+RQ + +AI +RTIR+P ++ ++KVL +
Sbjct: 352 MGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKK 411
Query: 413 YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 472
+ E P E+L +G T +++ + I + P+S+Q V +++F + DT VE
Sbjct: 412 LMMETGKEPTPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVE 471
Query: 473 IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532
P + +++ ++ +L L +ER ++ RFG+ DG+PK+L EVG+ F +++ER+RQ
Sbjct: 472 SPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQ 531
Query: 533 LESRALYRLKQSLGGKASYGYADLL 557
+E++AL +++ + K + DLL
Sbjct: 532 IEAKALRKMRHPIRSKQLRAFLDLL 556
>sp|P52331|RPOD_LISMO RNA polymerase sigma factor RpoD OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=rpoD PE=3 SV=1
Length = 374
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 171/306 (55%), Gaps = 42/306 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LLTADEE L +I+
Sbjct: 98 GVKINDPVRMYLKEIGRVDLLTADEEIALAKRIE-------------------------- 131
Query: 299 KAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 357
+G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGLMK
Sbjct: 132 ---------------AGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMK 176
Query: 358 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 417
+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 177 AVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDL 236
Query: 418 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDIS 477
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D P
Sbjct: 237 GRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDH 296
Query: 478 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 356
Query: 538 LYRLKQ 543
L +L+
Sbjct: 357 LRKLRH 362
>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor RpoD OS=Mycobacterium tuberculosis
GN=rpoD PE=1 SV=1
Length = 528
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 181/306 (59%), Gaps = 23/306 (7%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 296
D +R +L LL A+EE EL +I Q + L + KL + R+ I
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWI- 284
Query: 297 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 356
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+
Sbjct: 285 --------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLI 329
Query: 357 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 416
++VEKF G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+
Sbjct: 330 RAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQD 389
Query: 417 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDI 476
P E+LA+ + IT EK+ + R P+S+ Q + + D+ + D+ +
Sbjct: 390 LGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVD 449
Query: 477 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536
+V L++ ++++L L+ +E +VRLRFG+ DG+P++L E+G ++G+++ER+RQ+ES+
Sbjct: 450 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 509
Query: 537 ALYRLK 542
+ +L+
Sbjct: 510 TMSKLR 515
>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor RpoD OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=rpoD PE=3 SV=1
Length = 528
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 181/306 (59%), Gaps = 23/306 (7%)
Query: 244 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 296
D +R +L LL A+EE EL +I Q + L + KL + R+ I
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWI- 284
Query: 297 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 356
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+
Sbjct: 285 --------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLI 329
Query: 357 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 416
++VEKF G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+
Sbjct: 330 RAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQD 389
Query: 417 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDI 476
P E+LA+ + IT EK+ + R P+S+ Q + + D+ + D+ +
Sbjct: 390 LGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVD 449
Query: 477 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536
+V L++ ++++L L+ +E +VRLRFG+ DG+P++L E+G ++G+++ER+RQ+ES+
Sbjct: 450 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 509
Query: 537 ALYRLK 542
+ +L+
Sbjct: 510 TMSKLR 515
>sp|Q92BQ6|RPOD_LISIN RNA polymerase sigma factor RpoD OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rpoD PE=3 SV=1
Length = 374
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 171/306 (55%), Gaps = 42/306 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LLTADEE L +I+
Sbjct: 98 GVKINDPVRMYLKEIGRVDLLTADEEIALAKRIE-------------------------- 131
Query: 299 KAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 357
+G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGLMK
Sbjct: 132 ---------------AGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMK 176
Query: 358 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 417
+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 177 AVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDL 236
Query: 418 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDIS 477
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D P
Sbjct: 237 GRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDH 296
Query: 478 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++A
Sbjct: 297 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKA 356
Query: 538 LYRLKQ 543
L +L+
Sbjct: 357 LRKLRH 362
>sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MW2) GN=rpoD PE=3 SV=1
Length = 368
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MSSA476) GN=rpoD PE=3 SV=1
Length = 368
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MRSA252) GN=rpoD PE=3 SV=1
Length = 368
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1
Length = 368
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
COL) GN=rpoD PE=3 SV=1
Length = 368
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
NCTC 8325) GN=rpoD PE=3 SV=1
Length = 368
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
N315) GN=rpoD PE=1 SV=1
Length = 368
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|O83506|RPOD_TREPA RNA polymerase sigma factor RpoD OS=Treponema pallidum (strain
Nichols) GN=rpoD PE=3 SV=1
Length = 611
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 161/236 (68%), Gaps = 4/236 (1%)
Query: 312 LHSGN----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 367
+H G+ +++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF+ + G
Sbjct: 363 IHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKG 422
Query: 368 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 427
+F++YA WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P E++A
Sbjct: 423 YKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIA 482
Query: 428 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHV 487
+++ TVEK++++ + R P+S++ P+ ++D++ + D VE P ++ L+++ V
Sbjct: 483 QQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEV 542
Query: 488 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
R++L+ L +E ++R+RFG++ ++L EVG F +++ER+RQ+E++AL RL+
Sbjct: 543 RSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRH 598
>sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=rpoD PE=3 SV=1
Length = 368
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1
Length = 368
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 169/305 (55%), Gaps = 40/305 (13%)
Query: 239 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 298
G NDP+R++L LL+A EE EL +I+
Sbjct: 92 GVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIE-------------------------- 125
Query: 299 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 358
++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 126 --------------QGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 171
Query: 359 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 418
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 172 VEKFDFSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 231
Query: 419 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478
P E++ + + EK+ ++ I + P+S++ P+ + D+ + D + P
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 539 YRLKQ 543
+L+
Sbjct: 352 RKLRH 356
>sp|P55993|RPOD_HELPY RNA polymerase sigma factor RpoD OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=rpoD PE=3 SV=1
Length = 671
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 155/240 (64%), Gaps = 1/240 (0%)
Query: 315 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 374
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 429 SDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 488
Query: 375 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 434
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG+++
Sbjct: 489 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSL 548
Query: 435 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 494
+K++ +I +T+ P+S++ PV D D F + D + + ++ ++ + ++L L
Sbjct: 549 DKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQL 608
Query: 495 NPKERCIVRLRFG-IEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 553
N +E+ ++R+RFG ++D ++L E+G +++ERVRQ+ES A+ +L+ G+ Y
Sbjct: 609 NEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNY 668
>sp|Q9ZMY3|RPOD_HELPJ RNA polymerase sigma factor RpoD OS=Helicobacter pylori (strain
J99) GN=rpoD PE=3 SV=1
Length = 681
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 155/240 (64%), Gaps = 1/240 (0%)
Query: 315 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 374
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 SDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 498
Query: 375 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 434
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG+++
Sbjct: 499 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSL 558
Query: 435 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 494
+K++ +I +T+ P+S++ PV D D F + D + + ++ ++ + ++L L
Sbjct: 559 DKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQL 618
Query: 495 NPKERCIVRLRFG-IEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 553
N +E+ ++R+RFG ++D ++L E+G +++ERVRQ+ES A+ +L+ G+ Y
Sbjct: 619 NEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNY 678
>sp|Q83BB6|RPOD_COXBU RNA polymerase sigma factor RpoD OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=rpoD PE=1 SV=1
Length = 698
Score = 182 bits (461), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 149/227 (65%), Gaps = 2/227 (0%)
Query: 318 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 377
+++++I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 458 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 517
Query: 378 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 437
+RQ I ++I +RTIR+P ++ ++K+ R +QE E+L RR+ + EK+
Sbjct: 518 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMPEEKV 577
Query: 438 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIP-DISVQKQLMRQHVRNLLTLLNP 496
+++ I + P+SM+ P+ D+D+ + D +E P D + LM + R +L+ L P
Sbjct: 578 RKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLM-EATREILSTLTP 636
Query: 497 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
+E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 637 REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 683
>sp|Q89B10|RPOD_BUCBP RNA polymerase sigma factor RpoD OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpoD PE=3 SV=1
Length = 609
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 149/226 (65%)
Query: 318 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 377
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 371 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 430
Query: 378 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 437
+RQ I ++I +RTIR+P ++ ++K+ R +QE P E+L+ R+ I +K+
Sbjct: 431 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQEIGREPTPEELSERMLIPEDKI 490
Query: 438 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 497
+++ I + P+SM+ P+ D D+ + DT +E+P S +R +N+L+ L +
Sbjct: 491 RKVLKIAKEPISMETPIGEDDDSHLGDFLEDTNIELPLDSATSASLRSATKNVLSGLTTR 550
Query: 498 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 551 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 596
>sp|O24744|RPOD_SHEVD RNA polymerase sigma factor RpoD OS=Shewanella violacea (strain JCM
10179 / CIP 106290 / LMG 19151 / DSS12) GN=rpoD PE=3
SV=1
Length = 614
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 304 SCRDLKSELHSGNS----SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 359
S +D+ + G + ++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V
Sbjct: 358 SIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 417
Query: 360 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNH 419
+KF+ + G +F++YA WW+RQ I ++I +RTIR+P ++ ++K+ R +QE
Sbjct: 418 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 477
Query: 420 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQ 479
P E+LA R+ + +K+ +++ I + P+SM+ P+ D+D+ + DT +E+P S
Sbjct: 478 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 537
Query: 480 KQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 539
+ +R +L L +E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL
Sbjct: 538 GESLRNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 597
Query: 540 RLKQ 543
+L+
Sbjct: 598 KLRH 601
>sp|P17531|RPOD_MYXXA RNA polymerase sigma factor RpoD OS=Myxococcus xanthus GN=rpoD PE=3
SV=1
Length = 708
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 148/225 (65%)
Query: 318 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 377
++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 470 AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWW 529
Query: 378 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 437
+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A ++ + ++K+
Sbjct: 530 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKV 589
Query: 438 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 497
+++ I + P+S++ P+ ++D+ + D + P +V + + R +L L P+
Sbjct: 590 RKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPR 649
Query: 498 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542
E ++R+RFGI + +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 650 EEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 694
>sp|P0A2E3|RPOD_SALTY RNA polymerase sigma factor RpoD OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=rpoD PE=3 SV=1
Length = 615
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 149/226 (65%)
Query: 318 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 377
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436
Query: 378 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 437
+RQ I ++I +RTIR+P ++ ++K+ R +QE P E+LA R+ + +K+
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 496
Query: 438 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 497
+++ I + P+SM+ P+ D+D+ + DT +E+P S + +R ++L L +
Sbjct: 497 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 556
Query: 498 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543
E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 557 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 602
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,548,542
Number of Sequences: 539616
Number of extensions: 7698528
Number of successful extensions: 37103
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 36165
Number of HSP's gapped (non-prelim): 761
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)