Query 008652
Match_columns 558
No_of_seqs 414 out of 2496
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 8.5E-55 2.9E-59 467.5 36.0 315 241-555 91-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 6.5E-55 2.2E-59 468.1 27.5 312 241-555 76-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 8E-42 2.7E-46 382.0 1.1 252 304-555 357-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 3.9E-36 1.3E-40 300.9 16.3 209 242-450 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 1.2E-31 4.1E-36 260.5 20.6 222 316-547 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 1.8E-31 6E-36 259.0 6.0 216 315-542 26-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 1.9E-22 6.5E-27 190.4 14.9 180 305-547 10-190 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 5.5E-23 1.9E-27 192.8 10.3 171 303-545 11-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.9 3.5E-21 1.2E-25 175.8 14.2 155 341-549 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 4.9E-19 1.7E-23 164.1 -3.0 143 319-549 3-145 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 3.3E-16 1.1E-20 162.9 9.8 85 306-390 250-338 (339)
12 3t72_q RNA polymerase sigma fa 99.5 2.6E-14 8.9E-19 124.0 10.6 80 477-556 3-82 (99)
13 3n0r_A Response regulator; sig 99.5 4.6E-15 1.6E-19 150.6 6.3 143 314-546 18-160 (286)
14 1tty_A Sigma-A, RNA polymerase 99.3 1.3E-12 4.5E-17 109.8 7.5 72 486-557 11-82 (87)
15 1ku3_A Sigma factor SIGA; heli 99.3 7.9E-13 2.7E-17 107.3 3.8 69 487-555 4-73 (73)
16 3hug_A RNA polymerase sigma fa 99.3 1.7E-11 5.7E-16 103.8 10.8 75 471-549 15-89 (92)
17 2p7v_B Sigma-70, RNA polymeras 99.3 1.6E-12 5.5E-17 104.1 3.6 66 490-555 2-67 (68)
18 2o8x_A Probable RNA polymerase 99.0 7.2E-10 2.5E-14 88.0 7.1 64 483-550 5-68 (70)
19 2o7g_A Probable RNA polymerase 98.9 3.5E-09 1.2E-13 91.8 8.2 82 307-391 13-95 (112)
20 1xsv_A Hypothetical UPF0122 pr 98.8 1.3E-08 4.3E-13 89.9 10.4 69 478-550 9-78 (113)
21 1h3l_A RNA polymerase sigma fa 98.8 6.4E-09 2.2E-13 86.1 6.5 75 314-390 9-83 (87)
22 1s7o_A Hypothetical UPF0122 pr 98.7 2.5E-08 8.5E-13 88.2 7.4 63 484-550 12-75 (113)
23 3clo_A Transcriptional regulat 98.7 1.5E-11 5E-16 122.8 -15.7 153 307-544 86-243 (258)
24 2rnj_A Response regulator prot 98.5 4.4E-08 1.5E-12 82.5 3.6 58 482-544 18-75 (91)
25 1x3u_A Transcriptional regulat 98.5 1.8E-07 6.2E-12 75.9 6.3 54 486-544 9-62 (79)
26 3c57_A Two component transcrip 98.5 1.8E-07 6.2E-12 79.7 6.6 58 484-546 18-75 (95)
27 1jhg_A Trp operon repressor; c 98.5 1.2E-07 4.2E-12 82.2 5.0 63 483-546 24-90 (101)
28 1je8_A Nitrate/nitrite respons 98.3 3.1E-07 1.1E-11 76.1 4.7 56 486-546 14-69 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.5E-06 5E-11 69.3 5.2 53 487-544 5-57 (74)
30 3ulq_B Transcriptional regulat 98.0 9.8E-06 3.3E-10 68.5 6.4 49 489-542 25-73 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 8.2E-06 2.8E-10 62.8 4.4 43 496-543 1-43 (61)
32 1p4w_A RCSB; solution structur 97.9 1.7E-05 5.7E-10 68.3 6.1 47 492-543 33-79 (99)
33 2q0o_A Probable transcriptiona 97.5 0.00016 5.6E-09 70.5 7.1 46 493-543 175-220 (236)
34 1l3l_A Transcriptional activat 97.4 0.00017 5.7E-09 70.4 6.8 45 493-542 173-217 (234)
35 3szt_A QCSR, quorum-sensing co 97.3 0.00029 9.8E-09 69.1 6.3 46 492-542 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.2 0.00041 1.4E-08 69.3 6.3 46 493-543 197-242 (265)
37 1tc3_C Protein (TC3 transposas 96.9 0.0014 4.6E-08 47.1 5.2 40 493-536 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.6 0.0049 1.7E-07 53.3 7.1 46 493-542 18-63 (101)
39 1yio_A Response regulatory pro 96.5 0.0061 2.1E-07 56.7 7.8 51 487-542 136-186 (208)
40 1a04_A Nitrate/nitrite respons 96.2 0.0083 2.9E-07 56.2 7.0 46 492-542 153-198 (215)
41 2x48_A CAG38821; archeal virus 96.1 0.0058 2E-07 45.8 4.2 39 494-537 17-55 (55)
42 3c3w_A Two component transcrip 95.9 0.011 3.7E-07 56.2 6.4 46 492-542 148-193 (225)
43 3klo_A Transcriptional regulat 95.2 0.018 6E-07 54.6 5.0 47 491-542 157-203 (225)
44 3p7n_A Sensor histidine kinase 94.9 0.072 2.5E-06 51.0 8.4 55 483-542 188-242 (258)
45 3iyd_F RNA polymerase sigma fa 94.0 0.017 5.7E-07 64.5 1.9 35 241-275 93-127 (613)
46 1jko_C HIN recombinase, DNA-in 93.2 0.043 1.5E-06 39.5 2.5 33 499-536 12-44 (52)
47 1qgp_A Protein (double strande 93.1 0.11 3.6E-06 42.4 4.8 44 496-543 14-57 (77)
48 1p2f_A Response regulator; DRR 93.1 0.079 2.7E-06 49.6 4.7 50 493-543 145-197 (220)
49 2gwr_A DNA-binding response re 92.8 0.11 3.8E-06 49.4 5.3 50 493-543 153-207 (238)
50 1qbj_A Protein (double-strande 92.5 0.19 6.5E-06 41.4 5.6 44 496-543 10-53 (81)
51 2oqr_A Sensory transduction pr 92.4 0.1 3.5E-06 49.1 4.4 50 493-543 156-210 (230)
52 1kgs_A DRRD, DNA binding respo 91.9 0.12 4.1E-06 48.3 4.3 50 493-543 151-205 (225)
53 1ys7_A Transcriptional regulat 91.5 0.12 3.9E-06 48.7 3.7 50 493-543 159-213 (233)
54 3ugo_A RNA polymerase sigma fa 91.4 0.036 1.2E-06 54.8 0.0 51 487-542 192-244 (245)
55 3kor_A Possible Trp repressor; 91.1 0.2 6.7E-06 44.4 4.3 35 492-532 60-94 (119)
56 1u78_A TC3 transposase, transp 90.7 0.29 1E-05 42.6 5.3 40 493-536 6-45 (141)
57 1zx4_A P1 PARB, plasmid partit 90.5 0.33 1.1E-05 46.4 5.7 35 499-538 15-49 (192)
58 3r0j_A Possible two component 90.2 0.43 1.5E-05 45.7 6.4 50 493-543 176-230 (250)
59 1pdn_C Protein (PRD paired); p 90.2 0.47 1.6E-05 40.2 6.0 42 493-538 17-58 (128)
60 2hqr_A Putative transcriptiona 89.9 0.1 3.4E-06 48.9 1.6 50 493-543 143-197 (223)
61 3q9s_A DNA-binding response re 89.8 0.19 6.7E-06 48.5 3.6 50 493-543 182-236 (249)
62 2d1h_A ST1889, 109AA long hypo 89.2 0.73 2.5E-05 37.9 6.3 44 490-535 15-58 (109)
63 1k78_A Paired box protein PAX5 88.2 0.73 2.5E-05 40.9 6.0 42 493-538 32-73 (149)
64 3k2z_A LEXA repressor; winged 87.9 0.51 1.8E-05 44.4 5.0 42 493-534 2-45 (196)
65 3r0a_A Putative transcriptiona 87.7 1.1 3.6E-05 39.2 6.6 49 489-543 19-68 (123)
66 2heo_A Z-DNA binding protein 1 87.6 0.71 2.4E-05 36.2 4.9 44 494-543 8-51 (67)
67 1oyi_A Double-stranded RNA-bin 87.6 0.42 1.5E-05 39.6 3.6 24 513-536 30-53 (82)
68 2w48_A Sorbitol operon regulat 86.9 0.71 2.4E-05 46.7 5.7 36 500-539 12-47 (315)
69 2elh_A CG11849-PA, LD40883P; s 86.8 1.1 3.8E-05 36.6 5.8 27 512-538 37-63 (87)
70 2dbb_A Putative HTH-type trans 86.5 1.3 4.4E-05 39.5 6.6 41 492-535 5-45 (151)
71 3nqo_A MARR-family transcripti 86.2 1.9 6.5E-05 39.9 7.9 53 483-536 28-80 (189)
72 2o3f_A Putative HTH-type trans 86.1 2.8 9.6E-05 36.1 8.3 48 485-534 10-60 (111)
73 2cfx_A HTH-type transcriptiona 85.8 1.3 4.5E-05 39.3 6.3 40 493-535 2-41 (144)
74 1y0u_A Arsenical resistance op 85.3 4 0.00014 33.4 8.6 36 495-535 30-65 (96)
75 2cyy_A Putative HTH-type trans 84.9 1.8 6.2E-05 38.6 6.8 40 493-535 4-43 (151)
76 2x4h_A Hypothetical protein SS 84.8 1.4 4.6E-05 38.5 5.8 46 491-536 8-54 (139)
77 3tgn_A ADC operon repressor AD 84.6 1.6 5.6E-05 37.8 6.2 40 493-536 35-74 (146)
78 2cg4_A Regulatory protein ASNC 84.5 1.9 6.4E-05 38.5 6.7 41 493-536 5-45 (152)
79 1i1g_A Transcriptional regulat 84.5 1.6 5.3E-05 38.3 6.0 39 494-535 2-40 (141)
80 2w25_A Probable transcriptiona 84.1 1.6 5.5E-05 38.9 6.1 40 493-535 4-43 (150)
81 3frw_A Putative Trp repressor 84.0 2.5 8.7E-05 36.6 6.9 40 493-532 36-77 (107)
82 2p5v_A Transcriptional regulat 83.9 1.7 5.9E-05 39.3 6.2 41 493-536 7-47 (162)
83 3ech_A MEXR, multidrug resista 83.9 2.3 8E-05 36.8 6.9 51 483-536 20-74 (142)
84 1sfu_A 34L protein; protein/Z- 83.7 1.7 5.8E-05 35.4 5.3 33 507-543 23-55 (75)
85 3bro_A Transcriptional regulat 83.5 4.5 0.00015 34.6 8.5 52 484-536 20-73 (141)
86 1r1u_A CZRA, repressor protein 83.5 3.5 0.00012 34.5 7.6 46 486-535 15-61 (106)
87 1sfx_A Conserved hypothetical 83.4 1.6 5.5E-05 35.7 5.3 40 493-535 17-56 (109)
88 2gxg_A 146AA long hypothetical 83.4 3.4 0.00012 35.7 7.7 47 486-536 25-73 (146)
89 2pn6_A ST1022, 150AA long hypo 83.3 1.8 6.2E-05 38.4 6.0 39 494-535 1-39 (150)
90 3i4p_A Transcriptional regulat 83.2 1.8 6.2E-05 39.3 6.1 39 494-535 1-39 (162)
91 2glo_A Brinker CG9653-PA; prot 83.1 2.2 7.4E-05 32.2 5.5 32 513-545 21-56 (59)
92 3bpv_A Transcriptional regulat 82.4 3.9 0.00013 34.9 7.7 50 484-536 15-66 (138)
93 3cuo_A Uncharacterized HTH-typ 82.3 2.1 7.1E-05 34.8 5.6 45 488-535 15-60 (99)
94 2jn6_A Protein CGL2762, transp 82.3 2.2 7.7E-05 35.1 5.8 41 494-537 6-47 (97)
95 2k27_A Paired box protein PAX- 81.5 0.82 2.8E-05 41.2 3.0 40 493-536 25-64 (159)
96 3bdd_A Regulatory protein MARR 81.4 4.3 0.00015 34.7 7.6 41 493-536 28-68 (142)
97 3eco_A MEPR; mutlidrug efflux 81.4 4.9 0.00017 34.4 8.0 53 483-536 16-70 (139)
98 2fa5_A Transcriptional regulat 81.3 5.3 0.00018 35.2 8.4 50 485-537 35-87 (162)
99 2l0k_A Stage III sporulation p 81.0 1.5 5.2E-05 37.0 4.3 38 496-537 7-44 (93)
100 2e1c_A Putative HTH-type trans 81.0 2.5 8.6E-05 39.0 6.2 40 493-535 24-63 (171)
101 2nnn_A Probable transcriptiona 81.0 3.1 0.00011 35.5 6.5 49 485-536 26-75 (140)
102 3sqn_A Conserved domain protei 80.7 1.9 6.4E-05 46.6 6.0 106 420-543 32-138 (485)
103 2ia0_A Putative HTH-type trans 80.6 2.5 8.6E-05 38.9 6.1 41 492-535 13-53 (171)
104 2qvo_A Uncharacterized protein 80.4 1.7 5.8E-05 35.7 4.4 44 493-536 9-53 (95)
105 2htj_A P fimbrial regulatory p 80.2 3.6 0.00012 32.8 6.2 24 512-535 13-36 (81)
106 2oqg_A Possible transcriptiona 80.0 3.6 0.00012 34.3 6.5 45 487-535 11-56 (114)
107 1ku9_A Hypothetical protein MJ 79.9 5 0.00017 34.5 7.5 42 492-535 22-63 (152)
108 4hbl_A Transcriptional regulat 79.8 5.7 0.0002 34.7 8.0 49 486-537 29-79 (149)
109 3pqk_A Biofilm growth-associat 79.8 5 0.00017 33.1 7.2 50 486-543 12-62 (102)
110 3jth_A Transcription activator 79.8 5.4 0.00019 32.6 7.4 49 487-543 13-62 (98)
111 3cdh_A Transcriptional regulat 79.7 6 0.0002 34.6 8.1 50 484-536 29-80 (155)
112 1q1h_A TFE, transcription fact 79.7 2 6.7E-05 36.2 4.7 46 492-543 14-59 (110)
113 2zkz_A Transcriptional repress 79.4 2.8 9.7E-05 34.8 5.5 39 495-536 26-64 (99)
114 1jgs_A Multiple antibiotic res 79.3 6.3 0.00022 33.6 7.9 51 483-536 19-71 (138)
115 2lkp_A Transcriptional regulat 79.3 6.6 0.00023 33.2 8.0 46 487-536 22-68 (119)
116 2rdp_A Putative transcriptiona 79.3 5.4 0.00019 34.5 7.6 50 484-536 28-79 (150)
117 3fm5_A Transcriptional regulat 79.2 6 0.00021 34.5 7.9 52 483-536 24-77 (150)
118 1jhf_A LEXA repressor; LEXA SO 79.1 1.1 3.8E-05 42.0 3.2 44 493-536 3-49 (202)
119 2qww_A Transcriptional regulat 79.1 5.3 0.00018 34.9 7.5 48 486-536 29-78 (154)
120 3iwf_A Transcription regulator 79.0 5.6 0.00019 34.1 7.3 50 484-535 5-57 (107)
121 2fbh_A Transcriptional regulat 78.9 5 0.00017 34.4 7.2 51 484-536 23-75 (146)
122 3hsr_A HTH-type transcriptiona 78.9 4.1 0.00014 35.2 6.7 51 483-536 21-73 (140)
123 3o9x_A Uncharacterized HTH-typ 78.9 4.8 0.00016 34.9 7.1 39 492-536 69-107 (133)
124 1u78_A TC3 transposase, transp 78.7 11 0.00038 32.3 9.4 78 421-537 23-103 (141)
125 3qq6_A HTH-type transcriptiona 78.1 2.5 8.4E-05 33.5 4.5 25 512-536 22-46 (78)
126 3cjn_A Transcriptional regulat 78.0 3.9 0.00013 36.1 6.4 41 493-536 49-89 (162)
127 1uly_A Hypothetical protein PH 77.9 3.6 0.00012 38.8 6.4 38 494-535 18-55 (192)
128 3bj6_A Transcriptional regulat 77.8 6.2 0.00021 34.3 7.5 48 486-536 28-77 (152)
129 1uxc_A FRUR (1-57), fructose r 77.7 1.8 6.3E-05 33.8 3.5 24 514-537 1-24 (65)
130 1s3j_A YUSO protein; structura 77.4 4.1 0.00014 35.5 6.3 49 485-536 24-74 (155)
131 1zug_A Phage 434 CRO protein; 77.2 2.8 9.5E-05 31.7 4.4 25 512-536 15-39 (71)
132 3oop_A LIN2960 protein; protei 77.2 4.4 0.00015 35.0 6.3 50 484-536 23-74 (143)
133 2pex_A Transcriptional regulat 77.1 5.5 0.00019 34.8 7.0 50 484-536 33-84 (153)
134 3s2w_A Transcriptional regulat 77.0 4.3 0.00015 35.9 6.3 51 483-536 35-87 (159)
135 1r69_A Repressor protein CI; g 76.8 2.9 0.0001 31.3 4.4 25 512-536 13-37 (69)
136 2nyx_A Probable transcriptiona 76.7 4.4 0.00015 36.3 6.4 41 493-536 42-82 (168)
137 3kp7_A Transcriptional regulat 76.7 5.1 0.00017 35.0 6.6 48 485-536 25-74 (151)
138 2xi8_A Putative transcription 76.7 2.6 8.9E-05 31.2 4.1 25 512-536 13-37 (66)
139 3nrv_A Putative transcriptiona 76.6 4 0.00014 35.4 5.9 42 493-537 37-78 (148)
140 2a6c_A Helix-turn-helix motif; 76.4 2.9 0.0001 33.3 4.6 25 512-536 30-54 (83)
141 3hyi_A Protein DUF199/WHIA; la 76.4 3.3 0.00011 42.0 5.9 45 491-538 241-285 (295)
142 1r1t_A Transcriptional repress 76.4 6.3 0.00022 34.1 7.1 37 495-535 45-81 (122)
143 4b8x_A SCO5413, possible MARR- 76.2 5.1 0.00017 35.4 6.6 53 483-536 20-74 (147)
144 3g3z_A NMB1585, transcriptiona 76.2 6.8 0.00023 33.8 7.3 49 485-536 18-68 (145)
145 3f3x_A Transcriptional regulat 76.1 7.1 0.00024 33.6 7.4 40 493-536 34-73 (144)
146 3k0l_A Repressor protein; heli 76.0 6.6 0.00023 34.8 7.3 51 483-536 31-83 (162)
147 1y7y_A C.AHDI; helix-turn-heli 75.9 3.2 0.00011 31.6 4.5 25 512-536 25-49 (74)
148 3b7h_A Prophage LP1 protein 11 75.9 3.6 0.00012 31.7 4.8 25 512-536 19-43 (78)
149 4ghj_A Probable transcriptiona 75.5 2.9 9.8E-05 35.5 4.4 25 512-536 48-72 (101)
150 3f6w_A XRE-family like protein 75.5 2.4 8.1E-05 33.4 3.7 25 512-536 26-50 (83)
151 2b5a_A C.BCLI; helix-turn-heli 75.5 3.3 0.00011 31.9 4.5 25 512-536 22-46 (77)
152 3mn2_A Probable ARAC family tr 75.2 26 0.00088 28.9 10.4 37 407-443 5-41 (108)
153 2wiu_B HTH-type transcriptiona 75.2 3.9 0.00013 32.4 5.0 25 512-536 24-48 (88)
154 1neq_A DNA-binding protein NER 75.1 1.7 5.9E-05 34.7 2.8 25 512-536 21-45 (74)
155 2a61_A Transcriptional regulat 75.0 3.9 0.00013 35.2 5.4 41 493-536 30-70 (145)
156 2kko_A Possible transcriptiona 75.0 4.5 0.00015 34.1 5.6 49 487-543 15-64 (108)
157 3eus_A DNA-binding protein; st 75.0 3.1 0.0001 33.5 4.3 25 512-536 26-50 (86)
158 2k9q_A Uncharacterized protein 74.7 2.6 8.9E-05 32.9 3.7 25 512-536 14-38 (77)
159 1lj9_A Transcriptional regulat 74.7 5.5 0.00019 34.3 6.2 50 484-536 15-66 (144)
160 1u2w_A CADC repressor, cadmium 74.6 4.4 0.00015 35.0 5.5 38 495-535 41-78 (122)
161 2p5k_A Arginine repressor; DNA 74.6 4 0.00014 30.6 4.7 25 511-535 17-46 (64)
162 3t76_A VANU, transcriptional r 74.4 3.4 0.00012 34.1 4.5 25 512-536 36-60 (88)
163 2r1j_L Repressor protein C2; p 74.3 2.8 9.7E-05 31.2 3.7 25 512-536 17-41 (68)
164 1hlv_A CENP-B, major centromer 74.2 4.5 0.00015 34.9 5.5 46 493-542 7-54 (131)
165 3boq_A Transcriptional regulat 74.1 4.4 0.00015 35.7 5.6 51 485-537 33-86 (160)
166 3s8q_A R-M controller protein; 74.0 3.6 0.00012 32.3 4.5 25 512-536 23-47 (82)
167 4fx0_A Probable transcriptiona 73.8 8.9 0.00031 33.9 7.5 52 485-536 20-75 (148)
168 1on2_A Transcriptional regulat 73.6 2.8 9.5E-05 36.6 4.1 42 494-535 2-44 (142)
169 1p6r_A Penicillinase repressor 73.2 4 0.00014 32.4 4.6 42 492-536 5-50 (82)
170 2jt1_A PEFI protein; solution 73.1 2.3 8E-05 34.5 3.1 24 512-535 23-46 (77)
171 2fbi_A Probable transcriptiona 72.9 3.4 0.00012 35.4 4.4 41 493-536 33-73 (142)
172 2b0l_A GTP-sensing transcripti 72.8 2.5 8.7E-05 35.8 3.5 30 510-543 39-69 (102)
173 2ewt_A BLDD, putative DNA-bind 72.8 4.8 0.00016 30.4 4.8 25 512-536 20-46 (71)
174 2ef8_A C.ECOT38IS, putative tr 72.8 4.1 0.00014 31.9 4.5 25 512-536 22-46 (84)
175 3kz3_A Repressor protein CI; f 72.7 2.3 7.8E-05 33.5 3.0 25 512-536 24-48 (80)
176 3ryp_A Catabolite gene activat 72.5 14 0.00048 33.4 8.8 27 513-543 167-193 (210)
177 3fmy_A HTH-type transcriptiona 72.5 2.8 9.7E-05 32.7 3.4 25 512-536 23-47 (73)
178 2dk5_A DNA-directed RNA polyme 72.2 3.2 0.00011 34.7 3.8 43 492-535 16-58 (91)
179 1adr_A P22 C2 repressor; trans 72.2 3.3 0.00011 31.7 3.7 25 512-536 17-41 (76)
180 2fu4_A Ferric uptake regulatio 71.8 6 0.0002 31.4 5.3 45 493-543 14-64 (83)
181 2gau_A Transcriptional regulat 71.6 14 0.00049 34.1 8.8 49 491-543 148-206 (232)
182 2eth_A Transcriptional regulat 71.6 4.4 0.00015 35.6 4.9 41 493-536 41-81 (154)
183 2hr3_A Probable transcriptiona 71.5 3.9 0.00013 35.3 4.5 42 493-536 32-73 (147)
184 3bja_A Transcriptional regulat 71.3 4.6 0.00016 34.4 4.9 50 484-536 19-70 (139)
185 1x57_A Endothelial differentia 71.3 5.5 0.00019 32.0 5.1 25 512-536 25-49 (91)
186 3deu_A Transcriptional regulat 71.2 9.1 0.00031 34.4 7.1 52 483-536 38-91 (166)
187 3omt_A Uncharacterized protein 71.1 2.7 9.4E-05 32.3 3.0 25 512-536 20-44 (73)
188 3bs3_A Putative DNA-binding pr 70.8 4.3 0.00015 31.0 4.2 25 512-536 22-46 (76)
189 2kpj_A SOS-response transcript 70.8 4.5 0.00015 32.9 4.4 25 512-536 21-45 (94)
190 3g5g_A Regulatory protein; tra 70.7 4.5 0.00015 33.7 4.5 25 512-536 40-64 (99)
191 2ppx_A AGR_C_3184P, uncharacte 70.1 4.5 0.00015 33.4 4.3 25 512-536 42-66 (99)
192 3e6m_A MARR family transcripti 69.9 7.6 0.00026 34.4 6.2 49 485-536 40-90 (161)
193 3u2r_A Regulatory protein MARR 69.9 5.6 0.00019 35.5 5.3 53 483-536 31-85 (168)
194 4ham_A LMO2241 protein; struct 69.5 3.9 0.00013 36.0 4.0 30 510-543 34-64 (134)
195 4aik_A Transcriptional regulat 69.3 12 0.0004 33.2 7.3 51 484-536 17-69 (151)
196 2fbk_A Transcriptional regulat 69.2 5.4 0.00018 36.3 5.1 53 484-536 55-109 (181)
197 3tqn_A Transcriptional regulat 69.2 4.1 0.00014 34.8 4.0 29 511-543 30-59 (113)
198 2wus_R RODZ, putative uncharac 69.1 5.5 0.00019 34.3 4.8 25 512-536 19-43 (112)
199 1j5y_A Transcriptional regulat 68.9 6.5 0.00022 36.5 5.6 38 496-535 21-58 (187)
200 2o38_A Hypothetical protein; a 68.2 5.2 0.00018 34.8 4.5 25 512-536 52-76 (120)
201 2frh_A SARA, staphylococcal ac 68.1 4.2 0.00014 35.0 3.9 49 486-535 25-75 (127)
202 1ub9_A Hypothetical protein PH 68.0 4.9 0.00017 32.5 4.1 38 495-535 15-52 (100)
203 3bd1_A CRO protein; transcript 68.0 5.1 0.00018 31.4 4.1 25 512-537 11-35 (79)
204 2oz6_A Virulence factor regula 67.8 20 0.00068 32.3 8.7 27 513-543 164-190 (207)
205 3oio_A Transcriptional regulat 67.4 51 0.0017 27.3 10.6 36 408-443 11-46 (113)
206 1ais_B TFB TFIIB, protein (tra 67.3 77 0.0026 29.1 18.2 177 323-541 9-193 (200)
207 2ek5_A Predicted transcription 67.2 5 0.00017 35.3 4.2 30 510-543 24-54 (129)
208 1okr_A MECI, methicillin resis 67.2 3.4 0.00012 35.0 3.1 44 491-537 5-52 (123)
209 3vk0_A NHTF, transcriptional r 67.1 4.8 0.00016 34.1 4.0 25 512-536 33-57 (114)
210 2bv6_A MGRA, HTH-type transcri 67.1 6.1 0.00021 33.9 4.8 41 493-536 34-74 (142)
211 3b02_A Transcriptional regulat 67.0 19 0.00064 32.5 8.3 51 490-544 106-166 (195)
212 2jsc_A Transcriptional regulat 66.8 5.7 0.00019 34.0 4.4 37 495-535 20-56 (118)
213 2ao9_A Phage protein; structur 66.7 11 0.00038 34.6 6.6 44 492-535 22-70 (155)
214 3trb_A Virulence-associated pr 66.7 5.7 0.00019 33.6 4.4 25 512-536 26-50 (104)
215 1gdt_A GD resolvase, protein ( 66.6 5.4 0.00019 36.7 4.6 24 512-535 157-180 (183)
216 2auw_A Hypothetical protein NE 66.6 5.3 0.00018 37.3 4.4 37 494-536 90-126 (170)
217 1tbx_A ORF F-93, hypothetical 66.6 4.7 0.00016 33.0 3.7 41 493-536 5-49 (99)
218 3by6_A Predicted transcription 66.5 4.9 0.00017 35.2 4.0 30 510-543 31-61 (126)
219 3kxa_A NGO0477 protein, putati 66.3 5.8 0.0002 35.4 4.5 25 512-536 80-104 (141)
220 3iwz_A CAP-like, catabolite ac 66.1 26 0.00089 32.1 9.3 27 513-543 187-213 (230)
221 2zcw_A TTHA1359, transcription 66.1 23 0.00078 32.0 8.8 50 490-543 113-172 (202)
222 2r0q_C Putative transposon TN5 66.1 4.9 0.00017 37.9 4.2 31 500-535 167-197 (209)
223 3dv8_A Transcriptional regulat 66.0 12 0.00042 34.1 6.9 27 513-543 169-195 (220)
224 3jw4_A Transcriptional regulat 65.7 6.8 0.00023 34.0 4.8 50 486-536 29-80 (148)
225 1z4h_A TORI, TOR inhibition pr 65.6 4.8 0.00016 31.1 3.3 26 512-537 9-34 (66)
226 3mlf_A Transcriptional regulat 65.5 6.8 0.00023 33.3 4.6 25 512-536 35-59 (111)
227 3neu_A LIN1836 protein; struct 65.4 6.9 0.00024 34.0 4.8 29 511-543 34-63 (125)
228 2hin_A GP39, repressor protein 65.4 6.8 0.00023 31.3 4.3 22 515-536 12-33 (71)
229 3mky_B Protein SOPB; partition 65.4 8.9 0.0003 36.4 5.7 48 489-537 19-66 (189)
230 1ft9_A Carbon monoxide oxidati 65.1 5.6 0.00019 36.9 4.4 27 513-543 163-189 (222)
231 2rn7_A IS629 ORFA; helix, all 64.9 4.6 0.00016 33.8 3.4 24 514-537 31-54 (108)
232 2wte_A CSA3; antiviral protein 64.8 12 0.00042 36.5 6.9 47 490-543 146-192 (244)
233 1z91_A Organic hydroperoxide r 64.6 5.3 0.00018 34.5 3.9 43 493-538 37-79 (147)
234 1xmk_A Double-stranded RNA-spe 64.6 4.6 0.00016 33.0 3.2 24 512-535 24-48 (79)
235 1rr7_A Middle operon regulator 64.4 9.3 0.00032 33.9 5.4 39 496-540 81-119 (129)
236 1lmb_3 Protein (lambda repress 64.3 4.5 0.00016 32.4 3.1 25 512-536 29-53 (92)
237 3op9_A PLI0006 protein; struct 64.3 6.5 0.00022 33.0 4.3 25 512-536 21-45 (114)
238 2pij_A Prophage PFL 6 CRO; tra 64.3 8.3 0.00028 29.0 4.5 22 512-534 13-34 (67)
239 3e97_A Transcriptional regulat 64.3 6 0.0002 36.8 4.4 28 512-543 174-201 (231)
240 2pg4_A Uncharacterized protein 64.0 6.3 0.00022 32.1 4.0 25 512-536 29-54 (95)
241 3f6o_A Probable transcriptiona 63.5 5.2 0.00018 34.2 3.5 44 487-534 8-52 (118)
242 2hzt_A Putative HTH-type trans 63.1 6.7 0.00023 32.9 4.1 45 487-535 4-50 (107)
243 4ev0_A Transcription regulator 63.0 5.5 0.00019 36.4 3.9 28 512-543 162-189 (216)
244 2l49_A C protein; P2 bacteriop 62.8 6.8 0.00023 31.8 4.0 25 512-536 16-40 (99)
245 1b0n_A Protein (SINR protein); 62.8 7.9 0.00027 31.9 4.5 25 512-536 13-37 (111)
246 2jt1_A PEFI protein; solution 62.7 11 0.00037 30.5 5.1 26 418-443 22-47 (77)
247 3ivp_A Putative transposon-rel 62.6 9.3 0.00032 32.7 5.0 25 512-536 24-48 (126)
248 2o0m_A Transcriptional regulat 62.5 1.6 5.4E-05 44.8 0.0 43 494-539 18-60 (345)
249 2fmy_A COOA, carbon monoxide o 62.4 6.5 0.00022 36.3 4.3 28 512-543 166-193 (220)
250 2fxa_A Protease production reg 62.3 14 0.00047 34.7 6.6 48 486-536 36-85 (207)
251 3rkx_A Biotin-[acetyl-COA-carb 62.2 7 0.00024 39.8 4.8 44 496-544 3-46 (323)
252 2g9w_A Conserved hypothetical 62.2 9.8 0.00034 33.3 5.2 45 491-537 4-52 (138)
253 3d0s_A Transcriptional regulat 62.1 6.8 0.00023 36.2 4.4 28 512-543 176-203 (227)
254 2ict_A Antitoxin HIGA; helix-t 61.9 8.2 0.00028 31.1 4.3 25 512-536 20-44 (94)
255 3la7_A Global nitrogen regulat 61.7 6.9 0.00024 37.0 4.4 28 512-543 192-219 (243)
256 3kcc_A Catabolite gene activat 61.7 24 0.00083 33.6 8.4 27 513-543 217-243 (260)
257 2l8n_A Transcriptional repress 61.5 3.7 0.00013 32.2 2.0 23 513-535 9-31 (67)
258 3dkw_A DNR protein; CRP-FNR, H 61.4 5.9 0.0002 36.5 3.8 29 512-544 177-205 (227)
259 3e6c_C CPRK, cyclic nucleotide 61.2 7.2 0.00024 36.9 4.4 28 512-543 176-203 (250)
260 2hwv_A DNA-binding response re 61.1 19 0.00064 31.1 6.7 49 493-542 43-96 (121)
261 1hw1_A FADR, fatty acid metabo 61.1 7.9 0.00027 36.8 4.7 30 510-543 27-57 (239)
262 2y75_A HTH-type transcriptiona 61.1 8.3 0.00028 33.3 4.4 29 511-543 24-52 (129)
263 2vn2_A DNAD, chromosome replic 60.9 9.6 0.00033 33.3 4.9 44 493-536 29-74 (128)
264 1rzs_A Antirepressor, regulato 60.6 3.6 0.00012 31.3 1.8 21 514-534 11-31 (61)
265 3c7j_A Transcriptional regulat 60.6 8.1 0.00028 37.2 4.7 30 510-543 46-75 (237)
266 1r71_A Transcriptional repress 60.5 9.1 0.00031 35.8 4.9 41 492-535 34-74 (178)
267 3fm5_A Transcriptional regulat 60.4 59 0.002 27.9 10.1 64 372-443 14-77 (150)
268 3fym_A Putative uncharacterize 60.4 8.8 0.0003 33.6 4.5 26 512-537 15-40 (130)
269 1l9z_H Sigma factor SIGA; heli 60.0 1.1E+02 0.0039 32.4 13.8 35 276-310 285-321 (438)
270 2k4j_A Putative transcriptiona 59.5 15 0.00051 31.4 5.8 50 493-543 41-95 (115)
271 3qwg_A ESX-1 secretion-associa 59.5 6.3 0.00022 34.5 3.4 25 511-535 22-51 (123)
272 1xn7_A Hypothetical protein YH 59.3 6.5 0.00022 31.9 3.2 25 512-536 15-39 (78)
273 3f52_A CLP gene regulator (CLG 59.3 7 0.00024 32.9 3.6 25 512-536 40-64 (117)
274 1fx7_A Iron-dependent represso 59.3 3.8 0.00013 39.4 2.0 42 493-535 3-46 (230)
275 3eco_A MEPR; mutlidrug efflux 59.3 38 0.0013 28.6 8.4 64 373-443 7-70 (139)
276 3sxy_A Transcriptional regulat 59.1 7.7 0.00026 36.6 4.2 30 510-543 32-61 (218)
277 1g2h_A Transcriptional regulat 59.1 9.2 0.00031 29.1 3.9 20 515-534 35-54 (61)
278 1j1v_A Chromosomal replication 59.0 23 0.0008 29.5 6.7 29 512-540 45-74 (94)
279 1z7u_A Hypothetical protein EF 58.7 14 0.00049 31.1 5.5 45 487-535 12-58 (112)
280 3nrv_A Putative transcriptiona 58.6 32 0.0011 29.5 7.9 74 358-443 3-77 (148)
281 1zyb_A Transcription regulator 58.5 7.1 0.00024 36.5 3.9 27 513-543 186-212 (232)
282 2kfs_A Conserved hypothetical 58.4 5 0.00017 36.7 2.6 25 512-536 30-54 (148)
283 2h09_A Transcriptional regulat 58.0 7.5 0.00026 34.4 3.7 25 512-536 53-77 (155)
284 2jvl_A TRMBF1; coactivator, he 57.8 9 0.00031 32.2 4.0 25 512-536 48-72 (107)
285 3cec_A Putative antidote prote 57.2 7 0.00024 32.3 3.1 25 512-536 30-54 (104)
286 1sd4_A Penicillinase repressor 57.1 11 0.00037 31.9 4.5 43 492-537 6-52 (126)
287 2eby_A Putative HTH-type trans 56.5 9.3 0.00032 31.9 3.8 25 512-536 23-47 (113)
288 3lfp_A CSP231I C protein; tran 56.4 11 0.00037 30.8 4.2 25 512-536 13-41 (98)
289 1y6u_A XIS, excisionase from t 56.3 6.3 0.00022 31.3 2.5 25 512-536 15-39 (70)
290 3r1f_A ESX-1 secretion-associa 56.2 7.7 0.00026 34.5 3.4 25 511-535 24-53 (135)
291 2cw1_A SN4M; lambda CRO fold, 56.1 6.9 0.00024 30.6 2.7 23 513-535 13-35 (65)
292 3hrs_A Metalloregulator SCAR; 55.8 12 0.00042 35.5 5.0 35 501-535 7-42 (214)
293 3bdn_A Lambda repressor; repre 55.7 7.2 0.00025 36.9 3.3 25 512-536 29-53 (236)
294 2v79_A DNA replication protein 55.5 13 0.00046 33.0 4.9 47 493-539 29-77 (135)
295 3lsg_A Two-component response 55.3 27 0.00093 28.5 6.5 25 513-537 19-43 (103)
296 4ich_A Transcriptional regulat 55.2 7.3 0.00025 38.4 3.4 22 512-533 139-160 (311)
297 1v4r_A Transcriptional repress 55.1 4 0.00014 34.0 1.2 30 510-543 31-61 (102)
298 3bro_A Transcriptional regulat 55.0 50 0.0017 27.8 8.5 64 373-443 10-73 (141)
299 2bnm_A Epoxidase; oxidoreducta 54.9 11 0.00039 34.5 4.5 25 512-536 22-46 (198)
300 2da1_A Alpha-fetoprotein enhan 54.6 21 0.00071 27.6 5.3 51 494-544 14-65 (70)
301 2di3_A Bacterial regulatory pr 54.5 13 0.00044 35.5 5.0 30 510-543 24-54 (239)
302 2ecc_A Homeobox and leucine zi 54.3 18 0.0006 29.3 4.9 51 494-544 10-61 (76)
303 1y9q_A Transcriptional regulat 54.2 12 0.00039 34.4 4.4 25 512-536 23-47 (192)
304 1vz0_A PARB, chromosome partit 54.0 15 0.0005 35.6 5.3 41 492-535 116-156 (230)
305 3b73_A PHIH1 repressor-like pr 53.8 13 0.00043 32.2 4.3 40 494-536 11-52 (111)
306 3deu_A Transcriptional regulat 53.7 73 0.0025 28.2 9.7 64 372-443 28-91 (166)
307 3e7l_A Transcriptional regulat 53.3 15 0.00053 27.9 4.3 35 498-535 20-54 (63)
308 2qq9_A Diphtheria toxin repres 52.9 5.7 0.0002 38.0 2.2 43 493-535 3-46 (226)
309 3oou_A LIN2118 protein; protei 52.7 21 0.00074 29.5 5.5 33 501-537 13-45 (108)
310 4bbr_M Transcription initiatio 52.6 23 0.0008 36.3 6.8 36 512-547 291-326 (345)
311 3f6v_A Possible transcriptiona 52.4 9.7 0.00033 34.4 3.5 37 495-535 57-93 (151)
312 3mn2_A Probable ARAC family tr 52.2 20 0.00068 29.6 5.2 26 512-537 17-42 (108)
313 1gxq_A PHOB, phosphate regulon 52.2 20 0.00069 29.8 5.3 50 493-543 31-85 (106)
314 2hs5_A Putative transcriptiona 52.2 11 0.00037 36.3 4.0 37 501-543 41-77 (239)
315 3rjp_A COVR; winged helix-turn 52.1 29 0.001 28.1 6.2 50 493-543 22-76 (96)
316 3pvv_A Chromosomal replication 51.9 40 0.0014 28.5 7.1 31 512-542 49-79 (101)
317 3edp_A LIN2111 protein; APC883 51.7 14 0.00046 35.7 4.6 29 511-543 30-59 (236)
318 1bia_A BIRA bifunctional prote 51.7 19 0.00066 36.3 6.0 38 495-535 4-41 (321)
319 2k9l_A RNA polymerase sigma fa 51.5 30 0.001 27.6 5.9 56 480-542 15-73 (76)
320 2bgc_A PRFA; bacterial infecti 51.5 9.7 0.00033 35.7 3.5 27 513-543 169-196 (238)
321 3a03_A T-cell leukemia homeobo 51.4 26 0.00089 25.9 5.2 51 493-543 3-54 (56)
322 3ihu_A Transcriptional regulat 51.4 12 0.00039 35.4 4.0 37 501-543 29-65 (222)
323 2k02_A Ferrous iron transport 51.2 9.6 0.00033 31.7 2.9 25 512-536 15-39 (87)
324 2vz4_A Tipal, HTH-type transcr 51.1 8.7 0.0003 32.5 2.8 26 513-538 1-26 (108)
325 1j9i_A GPNU1 DBD;, terminase s 50.8 7.3 0.00025 30.1 2.1 25 514-538 3-27 (68)
326 1pdn_C Protein (PRD paired); p 50.7 55 0.0019 26.9 7.9 24 421-444 34-57 (128)
327 4aik_A Transcriptional regulat 50.5 1.2E+02 0.0041 26.5 10.5 27 417-443 43-69 (151)
328 2pmu_A Response regulator PHOP 50.2 22 0.00074 29.9 5.2 49 493-542 34-87 (110)
329 2da4_A Hypothetical protein DK 50.2 30 0.001 27.4 5.8 51 494-544 15-70 (80)
330 2wv0_A YVOA, HTH-type transcri 50.2 15 0.00053 35.4 4.8 30 510-543 30-60 (243)
331 1rp3_A RNA polymerase sigma fa 50.1 1.5E+02 0.0051 27.0 14.8 36 276-311 100-135 (239)
332 1yz8_P Pituitary homeobox 2; D 49.8 49 0.0017 25.3 6.8 53 493-545 9-62 (68)
333 2p5t_A Putative transcriptiona 49.8 3.5 0.00012 37.2 0.0 25 512-536 13-37 (158)
334 4a0z_A Transcription factor FA 49.7 18 0.0006 34.1 5.0 35 496-533 12-46 (190)
335 3uj3_X DNA-invertase; helix-tu 49.6 3.5 0.00012 38.4 0.0 34 499-537 149-182 (193)
336 3bwg_A Uncharacterized HTH-typ 49.6 15 0.00052 35.3 4.6 30 510-543 25-55 (239)
337 1k78_A Paired box protein PAX5 49.5 67 0.0023 27.8 8.6 24 421-444 49-72 (149)
338 3rqi_A Response regulator prot 49.3 9.1 0.00031 34.4 2.8 39 493-534 139-177 (184)
339 1stz_A Heat-inducible transcri 49.2 19 0.00064 36.9 5.5 42 494-535 15-60 (338)
340 3k2a_A Homeobox protein MEIS2; 48.8 36 0.0012 26.3 5.8 54 493-546 4-61 (67)
341 1ic8_A Hepatocyte nuclear fact 48.8 40 0.0014 31.9 7.3 24 512-535 42-65 (194)
342 3fx3_A Cyclic nucleotide-bindi 48.4 11 0.00036 35.2 3.2 28 512-543 177-204 (237)
343 1p4x_A Staphylococcal accessor 48.2 24 0.00081 34.5 5.8 43 493-536 155-197 (250)
344 1hkq_A REPA, replication prote 48.1 42 0.0015 29.3 6.9 59 486-544 11-78 (132)
345 2fa5_A Transcriptional regulat 48.1 94 0.0032 26.8 9.4 64 371-443 22-86 (162)
346 1opc_A OMPR, OMPRC; transcript 47.8 15 0.00053 30.7 3.8 49 493-542 31-84 (110)
347 2fbh_A Transcriptional regulat 47.8 1.2E+02 0.0042 25.3 10.2 63 373-443 13-75 (146)
348 2p8t_A Hypothetical protein PH 47.6 20 0.00069 34.2 5.0 45 493-543 12-56 (200)
349 3dn7_A Cyclic nucleotide bindi 47.6 8.5 0.00029 34.6 2.3 25 512-536 167-191 (194)
350 2xrn_A HTH-type transcriptiona 47.5 15 0.00052 35.3 4.2 26 510-535 18-43 (241)
351 3f8m_A GNTR-family protein tra 47.3 17 0.00059 35.2 4.6 32 508-543 30-62 (248)
352 3eet_A Putative GNTR-family tr 47.2 18 0.0006 35.8 4.7 29 511-543 50-79 (272)
353 1mkm_A ICLR transcriptional re 47.1 17 0.00059 35.0 4.6 24 512-535 22-45 (249)
354 1ahd_P Antennapedia protein mu 46.9 55 0.0019 25.1 6.7 53 494-546 9-62 (68)
355 2h8r_A Hepatocyte nuclear fact 46.5 31 0.0011 33.5 6.2 25 512-536 43-67 (221)
356 1ntc_A Protein (nitrogen regul 46.5 14 0.00048 30.3 3.3 37 496-535 50-86 (91)
357 2g7u_A Transcriptional regulat 46.4 24 0.00083 34.2 5.6 25 511-535 27-51 (257)
358 2e1o_A Homeobox protein PRH; D 46.4 30 0.001 26.7 5.1 53 494-546 14-67 (70)
359 2ofy_A Putative XRE-family tra 46.4 21 0.00071 28.0 4.2 22 515-536 29-50 (86)
360 2dmq_A LIM/homeobox protein LH 46.3 34 0.0011 27.1 5.5 53 494-546 14-67 (80)
361 3lwf_A LIN1550 protein, putati 46.3 31 0.0011 31.4 5.9 47 493-543 21-70 (159)
362 3oop_A LIN2960 protein; protei 46.2 71 0.0024 27.0 8.1 62 373-443 13-74 (143)
363 2dmu_A Homeobox protein goosec 45.5 29 0.00098 26.8 4.8 52 494-545 14-66 (70)
364 2dmn_A Homeobox protein TGIF2L 45.5 53 0.0018 26.4 6.6 55 494-548 14-72 (83)
365 2l1p_A DNA-binding protein SAT 45.4 13 0.00044 30.7 2.8 24 513-536 32-55 (83)
366 2p4w_A Transcriptional regulat 45.2 14 0.0005 34.9 3.6 42 490-535 8-50 (202)
367 1ylf_A RRF2 family protein; st 45.0 26 0.00091 31.1 5.2 30 510-543 27-56 (149)
368 1x2n_A Homeobox protein pknox1 44.8 23 0.00079 27.6 4.2 55 493-547 13-71 (73)
369 2f2e_A PA1607; transcription f 44.7 27 0.00092 31.0 5.1 24 512-535 36-59 (146)
370 1ig7_A Homeotic protein MSX-1; 44.5 34 0.0012 25.2 5.0 50 494-543 7-57 (58)
371 3plo_X DNA-invertase; resolvas 44.2 4.7 0.00016 37.6 0.0 29 512-540 157-185 (193)
372 1puf_B PRE-B-cell leukemia tra 44.1 40 0.0014 26.2 5.5 56 493-548 7-66 (73)
373 1jgg_A Segmentation protein EV 43.9 37 0.0013 25.3 5.1 51 493-543 7-58 (60)
374 2o0y_A Transcriptional regulat 43.7 22 0.00076 34.6 4.8 25 511-535 36-60 (260)
375 2oa4_A SIR5; structure, struct 43.7 8.7 0.0003 32.9 1.6 35 500-538 41-75 (101)
376 2jzy_A Transcriptional regulat 42.9 22 0.00074 30.1 4.0 49 493-542 28-81 (112)
377 1r8d_A Transcription activator 42.9 11 0.00037 31.9 2.1 25 514-538 3-27 (109)
378 3t8r_A Staphylococcus aureus C 42.9 31 0.0011 30.6 5.3 29 511-543 26-54 (143)
379 2hdd_A Protein (engrailed home 42.7 34 0.0012 25.6 4.7 51 493-543 9-60 (61)
380 3zq7_A KDP operon transcriptio 42.5 38 0.0013 27.7 5.4 50 493-543 28-82 (102)
381 2fsw_A PG_0823 protein; alpha- 42.4 16 0.00054 30.5 3.0 43 489-535 17-61 (107)
382 1o5l_A Transcriptional regulat 42.4 12 0.00042 34.3 2.6 28 512-543 163-190 (213)
383 1b72_B Protein (PBX1); homeodo 42.3 36 0.0012 27.3 5.2 55 493-547 7-65 (87)
384 2obp_A Putative DNA-binding pr 42.2 53 0.0018 27.6 6.3 44 492-535 12-58 (96)
385 2ia2_A Putative transcriptiona 42.0 23 0.00079 34.5 4.6 25 511-535 34-58 (265)
386 2jml_A DNA binding domain/tran 41.8 15 0.00052 29.3 2.7 24 513-536 5-28 (81)
387 3e6m_A MARR family transcripti 41.5 81 0.0028 27.4 7.9 63 372-443 28-90 (161)
388 1hqc_A RUVB; extended AAA-ATPa 41.5 30 0.001 33.8 5.4 44 493-536 244-287 (324)
389 1umq_A Photosynthetic apparatu 41.5 23 0.00078 28.9 3.7 21 514-534 55-75 (81)
390 1k61_A Mating-type protein alp 41.1 84 0.0029 23.2 6.7 51 493-543 4-58 (60)
391 2h1k_A IPF-1, pancreatic and d 40.8 46 0.0016 25.1 5.2 51 494-544 10-61 (63)
392 1b72_A Protein (homeobox prote 40.8 51 0.0017 27.2 5.9 54 493-546 40-94 (97)
393 2cue_A Paired box protein PAX6 40.8 48 0.0016 26.3 5.6 53 493-545 13-66 (80)
394 3bpv_A Transcriptional regulat 40.2 94 0.0032 25.9 7.8 62 373-443 5-66 (138)
395 1zq3_P PRD-4, homeotic bicoid 40.0 63 0.0021 24.7 6.0 54 493-546 8-62 (68)
396 2k40_A Homeobox expressed in E 39.9 43 0.0015 25.5 5.0 52 493-544 7-59 (67)
397 2k9s_A Arabinose operon regula 39.9 52 0.0018 27.0 5.9 36 407-442 6-42 (107)
398 3a02_A Homeobox protein arista 39.9 42 0.0014 25.0 4.8 51 493-543 5-56 (60)
399 2qlz_A Transcription factor PF 39.6 45 0.0015 32.3 6.2 24 512-535 177-200 (232)
400 1nk2_P Homeobox protein VND; h 39.6 47 0.0016 26.1 5.3 54 494-547 16-70 (77)
401 3nau_A Zinc fingers and homeob 39.3 49 0.0017 26.1 5.2 51 495-545 12-63 (66)
402 3knw_A Putative transcriptiona 39.3 1.9E+02 0.0067 25.2 10.6 79 286-364 28-108 (212)
403 2k27_A Paired box protein PAX- 39.2 1.5E+02 0.005 26.0 9.2 25 421-445 42-66 (159)
404 2k9s_A Arabinose operon regula 39.2 67 0.0023 26.3 6.5 26 512-537 19-44 (107)
405 3oou_A LIN2118 protein; protei 39.1 71 0.0024 26.2 6.7 71 333-433 13-83 (108)
406 2k9m_A RNA polymerase sigma fa 38.8 75 0.0026 28.0 7.0 48 492-543 15-65 (130)
407 3mkl_A HTH-type transcriptiona 38.2 31 0.001 29.1 4.3 25 512-536 22-46 (120)
408 2fjr_A Repressor protein CI; g 38.2 28 0.00094 31.6 4.2 22 515-536 22-43 (189)
409 2rdp_A Putative transcriptiona 38.1 1.4E+02 0.0046 25.3 8.6 24 420-443 56-79 (150)
410 3oio_A Transcriptional regulat 38.1 80 0.0027 26.1 6.9 45 332-376 14-58 (113)
411 3jw4_A Transcriptional regulat 38.0 52 0.0018 28.2 5.9 64 373-443 17-80 (148)
412 1xmk_A Double-stranded RNA-spe 37.7 36 0.0012 27.6 4.4 24 420-443 25-49 (79)
413 3r4k_A Transcriptional regulat 37.5 21 0.00073 34.8 3.5 34 502-535 10-43 (260)
414 2htj_A P fimbrial regulatory p 37.5 41 0.0014 26.4 4.7 24 420-443 14-37 (81)
415 2k4b_A Transcriptional regulat 37.2 10 0.00035 32.0 1.0 46 489-537 28-77 (99)
416 1jgs_A Multiple antibiotic res 37.1 1.1E+02 0.0036 25.6 7.7 63 372-443 9-71 (138)
417 1xn7_A Hypothetical protein YH 37.1 46 0.0016 26.7 4.9 24 420-443 16-39 (78)
418 3tgn_A ADC operon repressor AD 37.0 39 0.0013 28.7 4.9 23 421-443 52-74 (146)
419 1yyv_A Putative transcriptiona 36.9 32 0.0011 30.0 4.3 24 512-535 47-71 (131)
420 1akh_A Protein (mating-type pr 36.7 34 0.0012 25.5 3.9 48 493-540 11-59 (61)
421 3bja_A Transcriptional regulat 36.7 76 0.0026 26.4 6.6 24 420-443 47-70 (139)
422 1q06_A Transcriptional regulat 36.4 17 0.00057 32.2 2.3 25 514-538 1-25 (135)
423 2da2_A Alpha-fetoprotein enhan 36.3 23 0.0008 27.3 2.9 51 494-544 14-65 (70)
424 1fjl_A Paired protein; DNA-bin 36.2 55 0.0019 25.9 5.3 53 493-545 24-77 (81)
425 3k2z_A LEXA repressor; winged 35.8 50 0.0017 30.5 5.7 33 410-442 14-46 (196)
426 1lj9_A Transcriptional regulat 35.7 1.2E+02 0.0041 25.4 7.8 62 373-443 5-66 (144)
427 1iuf_A Centromere ABP1 protein 35.4 18 0.00061 32.1 2.4 43 493-537 11-60 (144)
428 2ovg_A Phage lambda CRO; trans 35.3 30 0.001 26.9 3.4 20 515-534 15-34 (66)
429 3rkq_A Homeobox protein NKX-2. 35.3 51 0.0017 24.0 4.6 49 493-541 8-57 (58)
430 1ftt_A TTF-1 HD, thyroid trans 35.2 57 0.0019 25.0 5.0 52 494-545 9-61 (68)
431 2jrt_A Uncharacterized protein 35.1 49 0.0017 27.7 4.9 26 512-537 48-73 (95)
432 2gqq_A Leucine-responsive regu 35.0 3.5 0.00012 37.4 -2.5 43 494-543 11-53 (163)
433 3mq0_A Transcriptional repress 34.9 19 0.00064 35.5 2.7 25 511-535 43-67 (275)
434 3k0l_A Repressor protein; heli 34.9 87 0.003 27.3 6.9 64 371-443 20-83 (162)
435 3t72_q RNA polymerase sigma fa 34.8 1.1E+02 0.0037 25.6 7.0 25 419-443 38-62 (99)
436 1bl0_A Protein (multiple antib 34.7 31 0.0011 29.6 3.8 26 512-537 26-51 (129)
437 3lsg_A Two-component response 34.7 69 0.0024 25.9 5.8 30 413-442 11-41 (103)
438 1eto_A FIS, factor for inversi 34.5 40 0.0014 28.3 4.3 22 514-535 72-93 (98)
439 3mkl_A HTH-type transcriptiona 34.1 76 0.0026 26.6 6.2 46 330-376 12-57 (120)
440 2dms_A Homeobox protein OTX2; 34.0 45 0.0015 26.4 4.4 53 494-546 14-67 (80)
441 2gxg_A 146AA long hypothetical 33.9 1.4E+02 0.0049 25.0 8.0 24 420-443 50-73 (146)
442 1uhs_A HOP, homeodomain only p 33.9 63 0.0022 25.0 5.2 53 493-545 7-61 (72)
443 3hh0_A Transcriptional regulat 33.8 20 0.00068 32.2 2.4 27 512-538 3-29 (146)
444 2dmt_A Homeobox protein BARH-l 33.7 30 0.001 27.5 3.3 51 494-544 24-75 (80)
445 2yu3_A DNA-directed RNA polyme 33.7 53 0.0018 27.6 4.9 47 491-542 32-78 (95)
446 4dyq_A Gene 1 protein; GP1, oc 33.7 32 0.0011 30.4 3.8 33 501-537 20-53 (140)
447 2da3_A Alpha-fetoprotein enhan 33.7 24 0.00081 27.9 2.6 51 494-544 24-75 (80)
448 3s2w_A Transcriptional regulat 33.6 1.1E+02 0.0036 26.5 7.3 64 371-443 24-87 (159)
449 3bj6_A Transcriptional regulat 33.4 1.3E+02 0.0044 25.5 7.7 24 420-443 54-77 (152)
450 1hsj_A Fusion protein consisti 33.3 40 0.0014 35.2 5.0 52 483-535 389-442 (487)
451 1z6r_A MLC protein; transcript 33.3 55 0.0019 33.5 6.1 38 499-539 19-56 (406)
452 2dn0_A Zinc fingers and homeob 33.3 40 0.0014 26.5 3.9 51 494-544 15-66 (76)
453 2cra_A Homeobox protein HOX-B1 32.8 24 0.00082 27.3 2.5 51 494-544 14-65 (70)
454 1b0n_A Protein (SINR protein); 32.5 35 0.0012 27.9 3.6 23 421-443 15-37 (111)
455 3cjn_A Transcriptional regulat 32.2 1.1E+02 0.0038 26.4 7.2 62 373-443 28-89 (162)
456 2nnn_A Probable transcriptiona 32.1 1.8E+02 0.0062 24.0 8.3 62 372-443 14-75 (140)
457 2ly9_A Zinc fingers and homeob 32.0 38 0.0013 26.3 3.5 55 494-548 13-68 (74)
458 2hi3_A Homeodomain-only protei 31.9 1.1E+02 0.0037 23.7 6.3 52 494-545 9-62 (73)
459 3pxp_A Helix-turn-helix domain 31.8 31 0.0011 34.6 3.7 25 512-536 24-48 (292)
460 1puf_A HOX-1.7, homeobox prote 31.6 66 0.0023 25.2 5.0 52 494-545 20-72 (77)
461 3hot_A Transposable element ma 31.5 44 0.0015 33.1 4.8 36 498-537 11-53 (345)
462 2hr3_A Probable transcriptiona 31.2 2.1E+02 0.0072 23.9 8.7 24 420-443 50-73 (147)
463 1u8b_A ADA polyprotein; protei 31.2 84 0.0029 26.8 6.0 25 512-536 92-116 (133)
464 3df8_A Possible HXLR family tr 31.1 44 0.0015 28.1 4.1 24 512-535 39-65 (111)
465 2z9m_A Response regulator YYCF 31.1 81 0.0028 26.7 5.8 49 493-542 36-89 (120)
466 1d5y_A ROB transcription facto 31.0 1E+02 0.0034 29.6 7.2 33 279-311 7-39 (292)
467 3cta_A Riboflavin kinase; stru 30.7 27 0.00093 33.1 2.9 27 510-536 24-50 (230)
468 1b8i_A Ultrabithorax, protein 30.4 64 0.0022 25.7 4.7 52 493-544 26-78 (81)
469 3k69_A Putative transcription 30.4 35 0.0012 31.0 3.5 29 511-543 26-54 (162)
470 2lnb_A Z-DNA-binding protein 1 30.2 44 0.0015 27.3 3.6 30 511-544 32-61 (80)
471 2dmp_A Zinc fingers and homeob 30.1 63 0.0022 26.3 4.7 52 493-544 19-71 (89)
472 2k02_A Ferrous iron transport 29.9 51 0.0017 27.2 4.1 24 420-443 16-39 (87)
473 2lk2_A Homeobox protein TGIF1; 29.9 1.2E+02 0.0041 25.2 6.3 53 493-545 11-67 (89)
474 3gpv_A Transcriptional regulat 29.8 21 0.00072 32.0 1.9 27 513-539 16-42 (148)
475 2r5y_A Homeotic protein sex co 29.7 73 0.0025 25.7 5.1 51 493-543 34-85 (88)
476 2zhg_A Redox-sensitive transcr 29.6 25 0.00086 31.8 2.4 28 512-539 10-37 (154)
477 1s3j_A YUSO protein; structura 29.6 1.5E+02 0.0052 25.1 7.5 24 420-443 51-74 (155)
478 3u1d_A Uncharacterized protein 29.4 69 0.0023 29.2 5.2 45 490-535 22-68 (151)
479 2pjp_A Selenocysteine-specific 29.1 92 0.0031 26.5 5.9 25 512-536 19-43 (121)
480 3ech_A MEXR, multidrug resista 29.0 1.9E+02 0.0066 24.2 8.0 24 420-443 51-74 (142)
481 3g3z_A NMB1585, transcriptiona 28.9 2.4E+02 0.0081 23.7 8.6 24 420-443 45-68 (145)
482 1c9b_A General transcription f 28.5 3.4E+02 0.012 24.8 13.9 34 512-545 158-191 (207)
483 2a61_A Transcriptional regulat 28.5 1E+02 0.0034 25.9 6.0 24 420-443 47-70 (145)
484 3egq_A TETR family transcripti 28.3 50 0.0017 28.3 4.1 22 512-533 23-44 (170)
485 3ic7_A Putative transcriptiona 28.2 4.8 0.00016 35.2 -2.7 29 511-543 32-61 (126)
486 2m0c_A Homeobox protein arista 28.0 59 0.002 25.1 4.0 51 494-544 16-67 (75)
487 3bqz_B HTH-type transcriptiona 27.7 53 0.0018 28.6 4.2 29 502-533 14-42 (194)
488 2zcm_A Biofilm operon icaabcd 27.5 53 0.0018 28.8 4.2 22 512-533 26-47 (192)
489 1mnm_C Protein (MAT alpha-2 tr 27.5 70 0.0024 25.7 4.5 50 493-542 33-86 (87)
490 3lfp_A CSP231I C protein; tran 27.4 1.1E+02 0.0037 24.5 5.8 70 420-502 14-89 (98)
491 2eth_A Transcriptional regulat 27.2 1.2E+02 0.0042 26.0 6.5 24 420-443 58-81 (154)
492 2da5_A Zinc fingers and homeob 27.1 62 0.0021 25.3 4.0 51 494-544 14-65 (75)
493 2hqn_A Putative transcriptiona 27.0 19 0.00066 30.0 1.0 50 493-543 29-83 (109)
494 1x3u_A Transcriptional regulat 26.8 1.2E+02 0.0041 23.0 5.7 26 418-443 29-54 (79)
495 3kz3_A Repressor protein CI; f 26.8 1.7E+02 0.0058 22.2 6.6 24 420-443 25-48 (80)
496 3ppb_A Putative TETR family tr 26.7 2.9E+02 0.01 23.4 11.4 76 286-361 23-99 (195)
497 3cdh_A Transcriptional regulat 26.7 1E+02 0.0034 26.5 5.8 24 420-443 57-80 (155)
498 3iuo_A ATP-dependent DNA helic 26.7 85 0.0029 27.1 5.2 27 512-538 31-57 (122)
499 2djn_A Homeobox protein DLX-5; 26.6 33 0.0011 26.5 2.3 50 494-543 14-64 (70)
500 3ivp_A Putative transposon-rel 26.5 1.4E+02 0.0048 25.0 6.6 79 420-505 25-105 (126)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=8.5e-55 Score=467.49 Aligned_cols=315 Identities=31% Similarity=0.569 Sum_probs=284.4
Q ss_pred CCChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhhCCCCchHHHHH---
Q 008652 241 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 299 (558)
Q Consensus 241 ~~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~iq~~~~le~~~~------------------~l~~~~g~~pt~~ewA~--- 299 (558)
...|+++.||++|+++|+||++||++|+++|+.++.++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 456899999999999999999999999999999754433211 11223567788888743
Q ss_pred ---------HccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCch
Q 008652 300 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 370 (558)
Q Consensus 300 ---------a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rF 370 (558)
+.|++...|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCc
Q 008652 371 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPL 448 (558)
Q Consensus 371 STYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~~ 448 (558)
+|||+||||+.|.++|++++|++|+|.|+...+++++++.+.+.+.+||.|+.++||..+| +++++|..++......+
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred ccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHH
Q 008652 449 SMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 528 (558)
Q Consensus 449 SLD~~i~~d~~~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISre 528 (558)
|+|.+++++++..+.+.+.+....+|++.+....+...|..+|+.||++||.||.+||||+|++++|++|||+.||||++
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~e 410 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRE 410 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHH
Confidence 99999987766677888877666678888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhcCchHhhhh
Q 008652 529 RVRQLESRALYRLK-QSLGGKASYGYAD 555 (558)
Q Consensus 529 rVRqie~RALkKLR-~~l~~~~L~~yld 555 (558)
||||++.+|++||| ..+....|++|++
T Consensus 411 rVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 411 RIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999 7888888999974
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=6.5e-55 Score=468.10 Aligned_cols=312 Identities=33% Similarity=0.584 Sum_probs=276.5
Q ss_pred CCChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hCCCCchHH---
Q 008652 241 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ---------------------FGREPTLIE--- 296 (558)
Q Consensus 241 ~~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~iq~~~~le~~~~~l~~~---------------------~g~~pt~~e--- 296 (558)
...|+++.||++|+++|+||++||++|+++|+.+..+.. .|... .|+.|+..+
T Consensus 76 ~~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (423)
T 2a6h_F 76 STSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLD 152 (423)
T ss_dssp TTHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCT
T ss_pred CCCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhh
Confidence 356899999999999999999999999999998754332 22222 234555433
Q ss_pred ------HHH---HccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCC
Q 008652 297 ------WAK---AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 367 (558)
Q Consensus 297 ------wA~---a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG 367 (558)
|+. ++++++..|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||+|||+|+++|||++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g 232 (423)
T 2a6h_F 153 PKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRR 232 (423)
T ss_dssp THHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred hhhhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Confidence 332 34667888999999889999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHhcC
Q 008652 368 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITR 445 (558)
Q Consensus 368 ~rFSTYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~ 445 (558)
++|+|||+||||+.|.++|++++|+||+|.|+...+++++++.+.+.+.+||.|+.++||..+| +++++|..++....
T Consensus 233 ~~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~ 312 (423)
T 2a6h_F 233 FKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQ 312 (423)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999888
Q ss_pred CCcccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCC
Q 008652 446 MPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 525 (558)
Q Consensus 446 ~~~SLD~~i~~d~~~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGI 525 (558)
.++|+|.+++++++..+.+++++....+|++.+....+...|..+|+.||++||.||.+||||+||+++|++|||+.|||
T Consensus 313 ~~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgi 392 (423)
T 2a6h_F 313 EPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGV 392 (423)
T ss_dssp CCEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSS
T ss_pred CCcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCc
Confidence 99999999987777778888887766678888888888899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-HHhhcCchHhhhh
Q 008652 526 SKERVRQLESRALYRLK-QSLGGKASYGYAD 555 (558)
Q Consensus 526 SrerVRqie~RALkKLR-~~l~~~~L~~yld 555 (558)
|++||||++.+|++||| ..+....|++|++
T Consensus 393 S~erVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 393 TRERIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 99999999999999999 8888888998874
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=8e-42 Score=381.97 Aligned_cols=252 Identities=34% Similarity=0.668 Sum_probs=237.4
Q ss_pred CHHHHHHHHhhcH-HH---HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHH
Q 008652 304 SCRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 379 (558)
Q Consensus 304 ~~~~L~~~l~~G~-~A---re~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr 379 (558)
+...|+.+++.|+ .| ++.||..|+++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+||++||||
T Consensus 357 ~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~ir 436 (613)
T 3iyd_F 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 (613)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHH
Confidence 3456777777766 66 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCC
Q 008652 380 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 459 (558)
Q Consensus 380 ~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~ 459 (558)
+.|.++++++.+.+|+|.|+...+++++++...+.+++||.|+.+|||+.+|++++++..++.....++|++.+++++++
T Consensus 437 n~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~ 516 (613)
T 3iyd_F 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 (613)
T ss_dssp HHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSS
T ss_pred HHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 460 TTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 460 ~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
..+.+.+.+....+|++.+...++...|..+|+.||+++|.||.||||+++++++|++|||+.||||++||++++++|++
T Consensus 517 ~~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~ 596 (613)
T 3iyd_F 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 596 (613)
T ss_dssp CCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHT
T ss_pred ccHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 78888888877778998888888888899999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHhhcCchHhhhh
Q 008652 540 RLKQSLGGKASYGYAD 555 (558)
Q Consensus 540 KLR~~l~~~~L~~yld 555 (558)
+||+++....|+.|+|
T Consensus 597 kLR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 597 KLRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTTSCSSSCSSTTCC-
T ss_pred HhhCcchhhHHHHHhc
Confidence 9999999999999987
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=3.9e-36 Score=300.90 Aligned_cols=209 Identities=33% Similarity=0.577 Sum_probs=132.1
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHh--h-----------------------hhCCCCchH
Q 008652 242 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--S-----------------------QFGREPTLI 295 (558)
Q Consensus 242 ~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~iq~~~~-le~~~~~l~--~-----------------------~~g~~pt~~ 295 (558)
.+|+++.||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 47899999999999999999999999999999765 333221110 0 024689999
Q ss_pred HHHHHccCC----HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchh
Q 008652 296 EWAKAIGLS----CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 371 (558)
Q Consensus 296 ewA~a~g~~----~~~L~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFS 371 (558)
+||.+.|++ ...|...+++|+.|++.||..|.++|+++|++|.+++.+++||+||||+|||+++++|||++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 999999875 3456777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCcc
Q 008652 372 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 449 (558)
Q Consensus 372 TYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~~S 449 (558)
||++||||++|.++++++.+.+++|.++...++++.++...+...+++.||.+|||+.|| +++++|...+...+.++|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999988887777
Q ss_pred c
Q 008652 450 M 450 (558)
Q Consensus 450 L 450 (558)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 5
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.98 E-value=1.2e-31 Score=260.45 Aligned_cols=222 Identities=22% Similarity=0.304 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccc
Q 008652 316 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 392 (558)
Q Consensus 316 ~~Are~LI~~nlrLV~sIArrY~---~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~ 392 (558)
..|++.|+..|.++|+++|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||++.+.++++++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 46899999999999999999998 6789999999999999999999999999999999999999999999999876
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcC--CCcccCCCCCCCCCcchhhhcccCC
Q 008652 393 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR--MPLSMQQPVWADQDTTFQEITADTG 470 (558)
Q Consensus 393 IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~--~~~SLD~~i~~d~~~~l~e~i~d~~ 470 (558)
+.|.+.....++++++...+....|+.|+.+++|..+|++.+++..++.... ...|++.+..++++.. .+. .+.
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 4677888889999999999999999999999999999999999998875432 2355655432222112 233 222
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008652 471 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 547 (558)
Q Consensus 471 ~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 547 (558)
..+|++.+...+....|..+|+.||+++|+||.++|+ +++|++|||+.||||.++|++++.+|+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFY----EELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3467777888888889999999999999999999998 899999999999999999999999999999998854
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=1.8e-31 Score=259.03 Aligned_cols=216 Identities=26% Similarity=0.443 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccc
Q 008652 315 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 394 (558)
Q Consensus 315 G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~IR 394 (558)
+..|++.|+..|.++|+++|++|.++..+++||+|||+++||+++++||+.+|.+|.||+++|+++.+.++++++. .++
T Consensus 26 d~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~ 104 (243)
T 1l0o_C 26 DQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVK 104 (243)
T ss_dssp --------------------------------------------------------------------------CC-CCT
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-Ccc
Confidence 3589999999999999999999999999999999999999999999999999899999999999999999999987 789
Q ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCC--cchhhhcccCCCC
Q 008652 395 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD--TTFQEITADTGVE 472 (558)
Q Consensus 395 lP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~--~~l~e~i~d~~~~ 472 (558)
+|.++.....+++++...+.+..++.|+.++++..+|++.+.+...+.......|++.++.++++ .++.+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~----- 179 (243)
T 1l0o_C 105 VSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQIA----- 179 (243)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhccC-----
Confidence 99999999999999999999999999999999999999999998887776667888877544322 22233222
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 473 IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 473 ~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
+..+...+....|..+|..||+++|+||.++|+ +++|++|||+.||||.++|++++.+|+++||
T Consensus 180 --~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 180 --DADEASWFDKIALKKAIEELDERERLIVYLRYY----KDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ----------------------------------------------------------------------
T ss_pred --cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 223334455667899999999999999999998 8999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.88 E-value=1.9e-22 Score=190.40 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=136.3
Q ss_pred HHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHH
Q 008652 305 CRDLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 383 (558)
Q Consensus 305 ~~~L~~~l~~G-~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~ 383 (558)
+.+|+..++.| ..|++.|+..|.+.|+.+|++|.+ ..+.+|++||+++++|+++++|++.. .|.+|++.++++.+.
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 45566666555 599999999999999999999999 89999999999999999999999875 599999999999999
Q ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchh
Q 008652 384 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 463 (558)
Q Consensus 384 ~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~~l~ 463 (558)
++++++.+..+. .++.. ... ..++.. ..+
T Consensus 87 d~~R~~~~~~~~----------------------------~~~~~-----------~~~-----~~~~~~------~~~- 115 (194)
T 1or7_A 87 NYLVAQGRRPPS----------------------------SDVDA-----------IEA-----ENFESG------GAL- 115 (194)
T ss_dssp HHHHHHTTCCTH----------------------------HHHHH-----------HHH-----HSCCSS------CC--
T ss_pred HHHHHHhccCcc----------------------------ccccc-----------ccc-----cccccc------ccc-
Confidence 999876643211 00000 000 000000 000
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 464 EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 464 e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+. .+|++.+...+....|..+|..||+++|+||.++|+ +++|++|||+.||||..+|++++.||+++||+
T Consensus 116 ---~~~--~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 116 ---KEI--SNPENLMLSEELRQIVFRTIESLPEDLRMAITLREL----DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp ------------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHT----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---cCC--CChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 000 122222233445567889999999999999999998 89999999999999999999999999999999
Q ss_pred Hhhc
Q 008652 544 SLGG 547 (558)
Q Consensus 544 ~l~~ 547 (558)
.+..
T Consensus 187 ~l~~ 190 (194)
T 1or7_A 187 KVQP 190 (194)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 8854
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.88 E-value=5.5e-23 Score=192.82 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=143.4
Q ss_pred CCHHHHHHH-Hhhc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHH
Q 008652 303 LSCRDLKSE-LHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 380 (558)
Q Consensus 303 ~~~~~L~~~-l~~G-~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~ 380 (558)
+++..|+.. +..| ..|++.|+..|.+.|+.+|+++.++..+.+|++||+++++|+++++|++..| .|.+|++.++++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 566777777 6655 5999999999999999999999999899999999999999999999999876 799999999999
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCc
Q 008652 381 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 460 (558)
Q Consensus 381 aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~ 460 (558)
.+.++++++.+... ++...
T Consensus 90 ~~~d~~R~~~~~~~-------------------------------------------------------~~~~~------ 108 (184)
T 2q1z_A 90 RRIDGLRKDRQPEP-------------------------------------------------------EDLFW------ 108 (184)
T ss_dssp SCCTTTCSSSCCCC-------------------------------------------------------CCCCC------
T ss_pred HHHHHHHhhccccc-------------------------------------------------------ccccc------
Confidence 98888876542110 00000
Q ss_pred chhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008652 461 TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 540 (558)
Q Consensus 461 ~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 540 (558)
..+ ...+|++.+...+....|..+|+.||+++|+||.++|. +++|++|||+.||||..+|++++.||+++
T Consensus 109 -----~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 109 -----GPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFF----GDLTHRELAAETGLPLGTIKSRIRLALDR 178 (184)
T ss_dssp -----CSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----SCCSSCCSTTTCCCCCHHHHHHHHHHHHH
T ss_pred -----cCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 011 12356777777777888999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHh
Q 008652 541 LKQSL 545 (558)
Q Consensus 541 LR~~l 545 (558)
||+.+
T Consensus 179 Lr~~l 183 (184)
T 2q1z_A 179 LRQHM 183 (184)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.86 E-value=3.5e-21 Score=175.77 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCC
Q 008652 341 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 420 (558)
Q Consensus 341 g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~ 420 (558)
|.+++|++|||+++||+++++||+.+ .+|.+|+++++++.+.++++++.+..+.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 67899999999999999999999988 7899999999999999999886533222110
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchh----hhcccCCCCChhHHHHHHHHHHHHHHHHh-cCC
Q 008652 421 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ----EITADTGVEIPDISVQKQLMRQHVRNLLT-LLN 495 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~~l~----e~i~d~~~~~pe~~le~~~~~e~L~~~L~-~L~ 495 (558)
..++.+.+..++....+. +.+. ....+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYK-SSESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 011111111111111111 1111 122367777788888889999999 999
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 549 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 549 (558)
+++|+||. +|. +|+|++|||+.||||.++|++++.||+++||+.+...+
T Consensus 112 ~~~r~v~~-~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 112 KFEKEVLT-YLI----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHHHH-HHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 676 89999999999999999999999999999999987543
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.69 E-value=4.9e-19 Score=164.06 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchh
Q 008652 319 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 398 (558)
Q Consensus 319 re~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~IRlP~~ 398 (558)
++.|+..|.+.|+.+|.++.++..+.+|++||+++++|+++++|++.. .|.+|++..+++.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 567899999999999999999989999999999999999999999763 69999999999999988754210
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCChhHHH
Q 008652 399 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 478 (558)
Q Consensus 399 ~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~~l~e~i~d~~~~~pe~~l 478 (558)
+ +.+. + ..
T Consensus 74 ----------------------~-----------------------------~~~~--e----------~~--------- 81 (157)
T 2lfw_A 74 ----------------------Q-----------------------------TSQS--D----------AE--------- 81 (157)
T ss_dssp ----------------------C-----------------------------CCCC--S----------CS---------
T ss_pred ----------------------c-----------------------------cCCc--c----------hH---------
Confidence 0 0000 0 00
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008652 479 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 549 (558)
Q Consensus 479 e~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 549 (558)
+....|..+|..||+++|+||.|+|. +|+|++|||+.||||..+|++.+.||+++||+.+....
T Consensus 82 ---~~~~~l~~~l~~Lp~~~r~vl~L~~~----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 82 ---GTEAVARARLARMTPLSRQALLLTAM----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp ---SSSSTTTTTTTTSCTTHHHHHTTTSS----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01124667899999999999999998 89999999999999999999999999999999886543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.64 E-value=3.3e-16 Score=162.88 Aligned_cols=85 Identities=41% Similarity=0.902 Sum_probs=77.2
Q ss_pred HHHHHHHhhc-H---HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHH
Q 008652 306 RDLKSELHSG-N---SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 381 (558)
Q Consensus 306 ~~L~~~l~~G-~---~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~a 381 (558)
..|..+++.| . .|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|++.+|++|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 3455555555 4 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 008652 382 IRKAIFQHS 390 (558)
Q Consensus 382 I~~aIr~~s 390 (558)
|.++++++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999998865
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.54 E-value=2.6e-14 Score=124.00 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchHhhhhh
Q 008652 477 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 556 (558)
Q Consensus 477 ~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yldl 556 (558)
.++..++...|..+|+.||++||+||.+|||++|++++|++|||+.||||+++|++++.+|+++||..+....|+.|+..
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~~ 82 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSSG 82 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778899999999999999999999999988999999999999999999999999999999999999999999853
No 13
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.53 E-value=4.6e-15 Score=150.61 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=118.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhccccc
Q 008652 314 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTI 393 (558)
Q Consensus 314 ~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~I 393 (558)
++..+|+.|+..|.+.++.+|++|.++..+.+|++||.|+.+|+..++|++. ..|.+|++..++|.+.+++++..
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~--- 92 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLE--- 92 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC------
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccc---
Confidence 3347999999999999999999999999999999999999999999999975 46999999999988876654210
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCC
Q 008652 394 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEI 473 (558)
Q Consensus 394 RlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~~l~e~i~d~~~~~ 473 (558)
.+ .... ..
T Consensus 93 ----------------------------------------------------------~~--~~~~---------~~--- 100 (286)
T 3n0r_A 93 ----------------------------------------------------------VG--HDQG---------LH--- 100 (286)
T ss_dssp -----------------------------------------------------------C--CCCC---------CC---
T ss_pred ----------------------------------------------------------cC--CCcc---------cc---
Confidence 00 0000 00
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 474 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 474 pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
....|..+|+.||+++|+||.|+|. +++|++|||+.+|++..+|+....+|+++|+..+.
T Consensus 101 ---------~~~~l~~al~~Lp~~~R~v~~L~~~----eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 ---------AGDDAAQRLMRIAPRSRQAFLLTAL----EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp ---------TTSHHHHHHHHHSCHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ---------hHHHHHHHHHhCCHHHeeEEEEEee----CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 0124788999999999999999998 99999999999999999999999999999998654
No 14
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.35 E-value=1.3e-12 Score=109.84 Aligned_cols=72 Identities=38% Similarity=0.719 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchHhhhhhh
Q 008652 486 HVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 557 (558)
Q Consensus 486 ~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yldll 557 (558)
.|..+|+.||+++|+||.++|+|++++++|++|||+.||||.++|++++.+|+++||..+....++.|++.+
T Consensus 11 ~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~~ 82 (87)
T 1tty_A 11 ELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLM 82 (87)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 678899999999999999999999889999999999999999999999999999999999888888887643
No 15
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.31 E-value=7.9e-13 Score=107.33 Aligned_cols=69 Identities=32% Similarity=0.631 Sum_probs=55.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHhhcCchHhhhh
Q 008652 487 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK-QSLGGKASYGYAD 555 (558)
Q Consensus 487 L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR-~~l~~~~L~~yld 555 (558)
|..+|+.||++|++||.++|+|+|++++|++|||+.||+|.++|++++.+|+++|| ..+....++.|++
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~~ 73 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE 73 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhhC
Confidence 45678899999999999999999889999999999999999999999999999999 8888888888763
No 16
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.28 E-value=1.7e-11 Score=103.82 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008652 471 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 549 (558)
Q Consensus 471 ~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 549 (558)
..+|++.++..+....|..+|..||+++|+||.|+|. +++|++|||+.||||..+|++++.||+++||+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3478888898899999999999999999999999998 89999999999999999999999999999999987654
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.27 E-value=1.6e-12 Score=104.06 Aligned_cols=66 Identities=33% Similarity=0.614 Sum_probs=61.2
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchHhhhh
Q 008652 490 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 555 (558)
Q Consensus 490 ~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yld 555 (558)
+|+.||++|++||.++|||++.+++|++|||+.||+|.++|++++.+|++|||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999887799999999999999999999999999999999998888888764
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=7.2e-10 Score=87.97 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008652 483 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 550 (558)
Q Consensus 483 ~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 550 (558)
....|..+|+.||+++++||.++|. +++|++|||+.||+|..+|+++..+|+++||+.+....+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3457888999999999999999997 899999999999999999999999999999998876544
No 19
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.89 E-value=3.5e-09 Score=91.80 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=69.2
Q ss_pred HHHHHHhh-cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHH
Q 008652 307 DLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 385 (558)
Q Consensus 307 ~L~~~l~~-G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~a 385 (558)
.|+..+.. +..|++.|+..|.+.|+.+|.++ ++..+.+|++||+++.+|+.+.+|++. ..|.+|++..+++.+.++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 34444444 45999999999999999999999 888899999999999999999999974 369999999999999999
Q ss_pred HHhccc
Q 008652 386 IFQHSR 391 (558)
Q Consensus 386 Ir~~sr 391 (558)
++++.+
T Consensus 90 ~R~~~~ 95 (112)
T 2o7g_A 90 IRHVRS 95 (112)
T ss_dssp TC----
T ss_pred HHHhhc
Confidence 987654
No 20
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.84 E-value=1.3e-08 Score=89.92 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008652 478 VQKQLMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 550 (558)
Q Consensus 478 le~~~~~e~L~~~L-~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 550 (558)
++.......+..++ ..||+++|+||.++|. +++|++|||+.||+|..+|+.++.||+++||..+...++
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYL----EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445566788899 9999999999999998 899999999999999999999999999999999876554
No 21
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.80 E-value=6.4e-09 Score=86.07 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=67.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcc
Q 008652 314 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 390 (558)
Q Consensus 314 ~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~s 390 (558)
++..+++.|+..|.+.++.+|.++.++..+.+|++||+++.+|+.+++|++. ..|.+|++..+++.+.++++++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 4459999999999999999999999998999999999999999999999975 47999999999999999887654
No 22
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.70 E-value=2.5e-08 Score=88.17 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=57.4
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008652 484 RQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 550 (558)
Q Consensus 484 ~e~L~~~L-~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 550 (558)
...+..++ ..||+++++||.++|. +|+|++|||+.||+|..+|+....+|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYA----DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHH----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34677788 8999999999999998 899999999999999999999999999999999876554
No 23
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.68 E-value=1.5e-11 Score=122.79 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=108.7
Q ss_pred HHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHH
Q 008652 307 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 381 (558)
Q Consensus 307 ~L~~~l~~G~-~Are~LI~~nlrLV~sIArrY~~~g~~~eDLI----QEG~IGLirAiekFDp~kG~rFSTYA~~wIr~a 381 (558)
.|..+++.++ .+.+.+...+.++++.+............|+. ||.++.+|+.+..|++.. .|.+|++..+++.
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 4666666665 78999999999999999988777767778886 999999999999998754 5777766544432
Q ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcc
Q 008652 382 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 461 (558)
Q Consensus 382 I~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~~ 461 (558)
+.+..+.. .+...+.....
T Consensus 164 ~~d~~r~~-----------------------------------------------------------~~~~~~~~~~~-- 182 (258)
T 3clo_A 164 SADQRPEQ-----------------------------------------------------------GIYATITQMER-- 182 (258)
T ss_dssp CSCCCCCS-----------------------------------------------------------SCCCEEEETTT--
T ss_pred Hcchhhhh-----------------------------------------------------------HHHHHHHhhcc--
Confidence 22221000 00000000000
Q ss_pred hhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008652 462 FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 541 (558)
Q Consensus 462 l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKL 541 (558)
.+... .. .+..++..||+++|+||.|++ +|+|.+|||+.||+|..||+.+..||++||
T Consensus 183 -~~~~~-----~~-----------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 183 -GEVET-----LS-----------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp -TEEEE-----CC-----------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred -ccccc-----ch-----------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 00000 00 135567899999999999985 799999999999999999999999999999
Q ss_pred HHH
Q 008652 542 KQS 544 (558)
Q Consensus 542 R~~ 544 (558)
|..
T Consensus 241 ~~~ 243 (258)
T 3clo_A 241 SVG 243 (258)
T ss_dssp TCS
T ss_pred cCC
Confidence 874
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.51 E-value=4.4e-08 Score=82.52 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 482 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 482 ~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.....+..++..|+++|++||.++ . +|+|.+|||+.||||..+|+.++.++++||+..
T Consensus 18 ~~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 18 SHMKKRAELYEMLTEREMEILLLI-A----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp -------CTGGGCCSHHHHHHHHH-H----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 344568889999999999999995 4 799999999999999999999999999999764
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.48 E-value=1.8e-07 Score=75.92 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 486 HVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 486 ~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.+..++..||++|++||.++ . +++|.+|||+.||+|..+|+++..++++||+..
T Consensus 9 ~l~~~l~~L~~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 9 DIRARLQTLSERERQVLSAV-V----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHHHHHHHCHHHHHHHHHH-T----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 57788999999999999995 4 799999999999999999999999999999853
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.48 E-value=1.8e-07 Score=79.66 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 484 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 484 ~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
...|..++..|+++|++||.+++ +|+|.+|||+.||||..+|+.++.++++||+..-.
T Consensus 18 ~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 18 GSHMQDPLSGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp ---------CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 44678899999999999999974 79999999999999999999999999999987543
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.46 E-value=1.2e-07 Score=82.18 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=54.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhccCC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 483 MRQHVRNLL-TLLNPKERCIVRLRFGIED---GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 483 ~~e~L~~~L-~~L~~rEReVL~LRyGL~d---~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
..+.+..++ ..|+++|+.+|.+|||+.+ +.++|+.|||+.+|+|+.+|.++ +|+|++|...+.
T Consensus 24 ~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 24 QNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 344567777 6799999999999999975 45699999999999999999999 899999877653
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.35 E-value=3.1e-07 Score=76.07 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 486 HVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 486 ~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
.+..++..|+++|++||.++ . +|+|.+|||+.||||..+|+..+.++++||+....
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLI-A----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 45677899999999999995 4 78999999999999999999999999999986543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.19 E-value=1.5e-06 Score=69.35 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 487 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 487 L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+...+..|+++|++||.+. . +++|.+|||+.||+|..+|++...++++||+..
T Consensus 5 ~~~~~~~L~~~e~~il~~~-~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELL-V----QDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp ---CCCCCCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCCCHHHHHHHHHH-H----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4456788999999999995 4 789999999999999999999999999999764
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.98 E-value=9.8e-06 Score=68.50 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 489 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 489 ~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
.....|+++|++||.+.+ +|+|.+|||+.||||..+|+....++++||.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 346789999999999987 7999999999999999999999999999985
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.91 E-value=8.2e-06 Score=62.85 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
++|++|+.+ |. +|+|.+|||+.||+|..+|+....++++||+.
T Consensus 1 ~re~~vl~l-~~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-ID----EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-HH----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-HH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 479999999 55 89999999999999999999999999999975
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.88 E-value=1.7e-05 Score=68.34 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
..|+++|++||.+.+ +|+|.+|||+.||||..+|+....++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 679999999999965 69999999999999999999999999999954
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.47 E-value=0.00016 Score=70.52 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+++|++||.+.+ +|+|.+|||++||||..||+....++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999965 79999999999999999999999999999953
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.45 E-value=0.00017 Score=70.37 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
.|+++|++||.+.+ +|+|.+|||++||||..||+..+.++++||.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 59999999999964 7999999999999999999999999999994
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.28 E-value=0.00029 Score=69.12 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=43.0
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
..|+++|++|+.+.. +|+|.+|||+.||||..||+..+.++++||.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 469999999999975 7999999999999999999999999999984
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.18 E-value=0.00041 Score=69.34 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+++|++||.+.. +|+|.+|||++||||..||+..+.++++||..
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999986 79999999999999999999999999999953
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.89 E-value=0.0014 Score=47.05 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.++..+...|. +++|..|||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~----~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 478888866656565 7899999999999999999987654
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.56 E-value=0.0049 Score=53.31 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
.+++.-..|-.++|. +|+|..|||+.||||+.+|.+++.+|...+.
T Consensus 18 ~~~~~~~~~A~lyYv----~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLV----DGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 688888899999998 9999999999999999999999999998864
No 39
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.47 E-value=0.0061 Score=56.71 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 487 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 487 L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
+...+..|+++|++|+.+.. +++|.+|||+.+|+|..||+....++++||.
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34456689999999998864 6899999999999999999999999999985
No 40
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.18 E-value=0.0083 Score=56.16 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
..|+++|++|+.+.. +++|.+|||+.+++|..||+....+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999999876 6899999999999999999999999999994
No 41
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.06 E-value=0.0058 Score=45.76 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
+++..+.|+.+ |. .++|..|||+.||||+.+|+.++.+|
T Consensus 17 ~~~~~~~i~~l-~~----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-AK----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-HH----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-HH----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34455666666 44 68999999999999999999987654
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.89 E-value=0.011 Score=56.25 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
..|+++|++||.+-. +++|.+|||+.+++|..||+....+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998865 6899999999999999999999999999984
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.18 E-value=0.018 Score=54.62 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 491 L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
...|+++|++|+.+.. +++|.+|||+.+++|..||+....+.++||.
T Consensus 157 ~~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 157 YAKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HHTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3469999999999854 6899999999999999999999999998883
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.85 E-value=0.072 Score=50.95 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 483 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 483 ~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
........+..|+.++++|+.+.. .+++.++||..||+|..+|+....++++||.
T Consensus 188 ~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 188 RRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344667889999999999999876 6899999999999999999999999999884
No 45
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=93.99 E-value=0.017 Score=64.49 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=13.4
Q ss_pred CCChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q 008652 241 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 275 (558)
Q Consensus 241 ~~~d~l~~Yl~~i~~~~lLT~eEE~eL~~~iq~~~ 275 (558)
..+||+++||++|++.||||+++|++|+++|..+.
T Consensus 93 ~~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 93 RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp ------------C--------CSSSTTTHHHHHHH
T ss_pred CCCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 36799999999999999999999999999998743
No 46
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.24 E-value=0.043 Score=39.48 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 499 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 499 ReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+.|+.+ +. ++.|..+||+.+|||+.+|..++.+
T Consensus 12 ~~i~~l-~~----~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-LE----KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-HH----TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-HH----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555 43 5699999999999999999987643
No 47
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.11 E-value=0.11 Score=42.37 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.++.||.+-.-...|++.|..|||+.+|||+.+|+++ +.+|.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~----L~~L~~ 57 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV----LYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 44566776655544456899999999999999998755 455544
No 48
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.10 E-value=0.079 Score=49.56 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG---LSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG---ISrerVRqie~RALkKLR~ 543 (558)
.|+++|++||.+-.- +.|+.+|.+|||+.++ +|..+|+....+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 599999999987652 2335599999999999 9999999999999999963
No 49
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=92.75 E-value=0.11 Score=49.42 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|.+||.+-.- +.|..+|.+|||+.+ ++|..+|+....+.++||..
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 599999999987653 233559999999999 99999999999999999953
No 50
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.46 E-value=0.19 Score=41.41 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.++.||.+-.....|+..|..|||+.||||+.+|+ +.|.+|.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~----~~L~~Le~ 53 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345566665554444578999999999999998887 55666654
No 51
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=92.41 E-value=0.1 Score=49.07 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|.+||.+-.- +.|+.+|.+|||+.+ ++|..+|+....+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 599999999987653 334569999999999 99999999999999999853
No 52
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.94 E-value=0.12 Score=48.27 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 543 (558)
.|+++|.+||.+-.- +.|..+|.+|||+.++ +|..+|+....+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 599999999987652 2234599999999998 9999999999999999964
No 53
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=91.54 E-value=0.12 Score=48.67 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 543 (558)
.|+++|.+||.+-.- +.|..+|.+|||+.++ +|..+|+....+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 499999999987653 2234599999999998 9999999999999999974
No 54
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.44 E-value=0.036 Score=54.85 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Q 008652 487 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRALYRLK 542 (558)
Q Consensus 487 L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG--ISrerVRqie~RALkKLR 542 (558)
+...+..|++.++. |...|| .+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45566778777777 445666 7899999999999 999999999999988763
No 55
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.06 E-value=0.2 Score=44.44 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRq 532 (558)
..|+.| .+|+.+-. +|+|+.|||+.+|+|..||..
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH
Confidence 455666 67777755 679999999999999999974
No 56
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.74 E-value=0.29 Score=42.65 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.++..|...+. .|+|..+||+.||||+.+|+.+..+
T Consensus 6 ~~s~~~r~~i~~~~~----~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 467777766666565 6899999999999999999988765
No 57
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=90.46 E-value=0.33 Score=46.43 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 499 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 499 ReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
..+..+ |. .|+|..|||+.||||+.+|.+++..|.
T Consensus 15 ~ria~~-y~----~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-KN----DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-HH----TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-HH----cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 345555 65 789999999999999999999988765
No 58
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.23 E-value=0.43 Score=45.72 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|.+||.+... +.|+..|.+||++.+ +++..+|+....+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 599999999988653 446889999999999 78999999999999999864
No 59
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.16 E-value=0.47 Score=40.23 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
.+++.++.-+...+. .++|..+||+.||||+.+|+.+..+..
T Consensus 17 ~~s~~~r~~i~~~~~----~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA----DGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355555554444444 679999999999999999999887643
No 60
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=89.93 E-value=0.1 Score=48.95 Aligned_cols=50 Identities=4% Similarity=-0.050 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 543 (558)
.|+++|++||.+-.- +.|+.+|.+|||+.++ +|..+|+....+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 599999999987652 1123499999999999 9999999999999999974
No 61
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=89.79 E-value=0.19 Score=48.53 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGN-----IFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe-----~LGISrerVRqie~RALkKLR~ 543 (558)
.|+++|++||.+-.- +.|+.+|.+|||+ .++++..+|+....+.++||..
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 599999999998763 3346699999999 5888999999999999999863
No 62
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.18 E-value=0.73 Score=37.88 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 490 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 490 ~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
....|++.+..+|...+. .+.+.|..|||+.+|+|+.+|++++.
T Consensus 15 ~~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 15 CCYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HHHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346789988887755442 12679999999999999999975443
No 63
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.18 E-value=0.73 Score=40.94 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
.++..+|.-|...+. .++|..+||+.||||+.+|+.++.+..
T Consensus 32 ~~s~e~r~~iv~~~~----~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAH----QGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 356655554544454 679999999999999999999987754
No 64
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=87.87 E-value=0.51 Score=44.40 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcc--CCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGI--EDGKPKSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL--~d~e~~Tl~EIAe~LGISrerVRqie 534 (558)
.|+++|++|+.+-..+ ..|.+.|.+|||+.||+|..+|+.++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999875422 23468999999999999988876543
No 65
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.71 E-value=1.1 Score=39.18 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHHhcCCHHHHHHHHHHhccCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 489 NLLTLLNPKERCIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 489 ~~L~~L~~rEReVL~LRyGL~d~e~-~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
...-.|++.+..|+..-.. .+.+ .|..|||+.+|+++.+|. |.+++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~----r~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQ----RSVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4456899999999887653 2234 899999999999999997 55556654
No 66
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.62 E-value=0.71 Score=36.17 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+++..+.||.+--- ++.+.|..|||+.+|+|+.+|.+ .++.|++
T Consensus 8 m~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~----~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQ----VLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred ccHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34445556654321 23679999999999999888874 4556654
No 67
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=87.59 E-value=0.42 Score=39.59 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+.|..|||+.||||+.+|++++.+
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 499999999999999999976654
No 68
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=86.86 E-value=0.71 Score=46.75 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.3
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 500 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 500 eVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
.|..++|. +++|.+|||+.||||+.+||+.+..+.+
T Consensus 12 ~ia~l~~~----~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYYE----QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46777776 7899999999999999999987776644
No 69
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.76 E-value=1.1 Score=36.65 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
.+.|..+||+.+|||+.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 70
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.46 E-value=1.3 Score=39.51 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|++.++.||.+-.. +...|..|||+.+|+|+.+|+++++
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 45 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRID 45 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3588999998875432 2579999999999999999985543
No 71
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=86.24 E-value=1.9 Score=39.89 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+..|++.|..||..-+... +.+.|..+||+.+|+++.+|..++.+
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344556667789999999998766321 25899999999999999999865443
No 72
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=86.06 E-value=2.8 Score=36.09 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCC---CCCCHHHHHHHhCCCHHHHHHHH
Q 008652 485 QHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 485 e~L~~~L~~L~~rEReVL~LRyGL~d~---e~~Tl~EIAe~LGISrerVRqie 534 (558)
..|...+..|++.|+.|..+... .. ..+|..|||+..|+|..+|-+..
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~--~~~~~~~~si~elA~~~~vS~aTv~Rf~ 60 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILA--HPHXAIESTVNEISALANSSDAAVIRLC 60 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHH--CHHHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHH--ChHHHHhcCHHHHHHHHCCCHHHHHHHH
Confidence 35677788999999998776542 21 36999999999999999998654
No 73
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.82 E-value=1.3 Score=39.31 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|++.++.||.+-.. +...|..|||+.+|+|+.+|+.+++
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 41 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVR 41 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 378888888876442 2579999999999999999986543
No 74
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=85.27 E-value=4 Score=33.42 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++....||.+- . .+.|..|||+.+|+|+.+|++.+.
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45566677655 3 579999999999999999986543
No 75
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.86 E-value=1.8 Score=38.64 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|+++++
T Consensus 4 ~ld~~~~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 478888888875432 2 479999999999999999986544
No 76
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.81 E-value=1.4 Score=38.46 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhcc-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 491 L~~L~~rEReVL~LRyGL-~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+..|++.+..+|..-+.+ ..+.+.|..+||+.+|+++.+|++++.+
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 346888888887765543 2346899999999999999999865443
No 77
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=84.61 E-value=1.6 Score=37.79 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. .+.|..|||+.+|+++.+|++++.+
T Consensus 35 ~lt~~~~~iL~~l~~----~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE----ESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHTT----CCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 468888888776553 2399999999999999999865443
No 78
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.53 E-value=1.9 Score=38.55 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.++.||.+-.. +...|..|||+.+|+|+.+|++++++
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888875432 25789999999999999999865443
No 79
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=84.46 E-value=1.6 Score=38.29 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
|++.++.||..-.. +...|..|||+.+|+|+.+|++.+.
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 67778888875432 2568999999999999999975443
No 80
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=84.14 E-value=1.6 Score=38.88 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|++++.
T Consensus 4 ~ld~~~~~iL~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~ 43 (150)
T 2w25_A 4 ALDDIDRILVRELAA--D-GRATLSELATRAGLSVSAVQSRVR 43 (150)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 488888888876432 2 479999999999999999986544
No 81
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=83.95 E-value=2.5 Score=36.62 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHhccCC--CCCCCHHHHHHHhCCCHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQ 532 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d--~e~~Tl~EIAe~LGISrerVRq 532 (558)
-+++.|+.-|..|+-+-. .+|+|+.||++.+|+|..+|.+
T Consensus 36 L~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 36 VCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 367777665554443321 1579999999999999999974
No 82
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.91 E-value=1.7 Score=39.29 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.++.||.+-.. +...|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE---NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488888888876442 24689999999999999999865443
No 83
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=83.88 E-value=2.3 Score=36.83 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~~----L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+.. |++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHH
Confidence 34456666654 99999999887664 24899999999999999999865544
No 84
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=83.74 E-value=1.7 Score=35.41 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=23.9
Q ss_pred ccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 507 GIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 507 GL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+|..|+..|..+||..||+++..|. |+|.+|.+
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vN----r~LY~L~k 55 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKIN----QQLYKLQK 55 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444466899999999999987765 55555543
No 85
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=83.50 E-value=4.5 Score=34.62 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=38.1
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+ ..|++.+..||..-+.- ++.+.|..|||+.+|+++.+|.+++.+
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 20 STRFDIFAKKYDLTGTQMTIIDYLSRN-KNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 34455555 35899999988876652 223799999999999999999765443
No 86
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=83.48 E-value=3.5 Score=34.52 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 486 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 486 ~L~~~L~~L~-~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.+..++..|. +....||.+-.. .++|..|||+.+|+|+.+|++.++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445555555 455566665432 578999999999999999986543
No 87
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.42 E-value=1.6 Score=35.67 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|++.+..||..-.. +.+.|..|||+.+|+++.+|++++.
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 578888888876542 2579999999999999999985544
No 88
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.37 E-value=3.4 Score=35.66 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 486 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 486 ~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+...+ ..|++.+..||..-+ +.+.|..|||+.+|+++.+|..++.+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 344444 358999999887765 26899999999999999999865443
No 89
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=83.30 E-value=1.8 Score=38.40 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
|++.++.||.+-- .+...|..|||+.+|+|+.+|+++++
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~ 39 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYRIK 39 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5677777776543 23579999999999999999986543
No 90
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=83.16 E-value=1.8 Score=39.33 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
|++.++.||.+--. +...|..|||+.+|+|+.+|+.+++
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~ 39 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQ 39 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56777888776432 2578999999999999999986544
No 91
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=83.07 E-value=2.2 Score=32.16 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=25.6
Q ss_pred CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 513 PKS----LSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 513 ~~T----l~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
+.| ..+||..+||+..+|++...+ ...++..+
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 567 999999999999999999764 45555544
No 92
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=82.43 E-value=3.9 Score=34.88 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 15 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 15 RVFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334455553 589999988877654 36799999999999999999865443
No 93
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.35 E-value=2.1 Score=34.78 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHhcC-CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 488 RNLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 488 ~~~L~~L-~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..++..| ++.+..||.+-. .+.+.|..|||+.+|+|+.+|++.+.
T Consensus 15 ~~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 15 AALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3344444 356666665432 34589999999999999999985543
No 94
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.34 E-value=2.2 Score=35.09 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=29.2
Q ss_pred CCHHHHH-HHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 494 LNPKERC-IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 494 L~~rERe-VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.++..+. |+.+..- +.+.|..+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~~---~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYEN---SDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTT---GGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---cCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554 4444432 027899999999999999999987653
No 95
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=81.52 E-value=0.82 Score=41.19 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++..+|.-|...+- .++|..+||+.||||+.+|++++.+
T Consensus 25 ~~s~e~r~~ii~l~~----~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH----QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHH----HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355555554444443 5799999999999999999998765
No 96
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=81.40 E-value=4.3 Score=34.73 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. +.+.|..|||+.+|+|+.+|.+++.+
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 799999988877653 25799999999999999999865443
No 97
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=81.37 E-value=4.9 Score=34.43 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+. .|++.|..||..-+. .++++.|..|||+.+|+++.+|.+++.+
T Consensus 16 ~~~~~~~~~~~~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 16 MKQKADQKLEQFDITNEQGHTLGYLYA-HQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH-STTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 3445555553 589999999887764 2225899999999999999999865544
No 98
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.31 E-value=5.3 Score=35.19 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 485 QHVRNLL---TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 485 e~L~~~L---~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
..+...+ -.|++.|..||..-+. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 35 ~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 35 GNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444 3699999998887664 258999999999999999998655443
No 99
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=80.99 E-value=1.5 Score=36.96 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
+|...|+.+... .+.|..+||+.+|||..||+..+..-
T Consensus 7 ~R~~~I~~~l~~----~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVE----TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345555555443 34899999999999999999988753
No 100
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=80.98 E-value=2.5 Score=38.98 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|+++++
T Consensus 24 ~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~rl~ 63 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIR 63 (171)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 588999988876542 2 479999999999999999986543
No 101
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.98 E-value=3.1 Score=35.50 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=36.6
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 485 QHVRNLLT-LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 485 e~L~~~L~-~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+...+. .|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444443 799999998877653 14899999999999999999865443
No 102
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=80.70 E-value=1.9 Score=46.57 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCC-CCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHH
Q 008652 420 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKE 498 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~-~d~~~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rE 498 (558)
.-|..+||+.+|+|...|+.-+..-...+.-...+. .+.+-.+ ......... . ....+.+.+
T Consensus 32 ~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L----~~~~~~~~~----------~---~~~~~~~~e 94 (485)
T 3sqn_A 32 QLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRL----RNQGNAQTN----------E---LWSLFLPQS 94 (485)
T ss_dssp SCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEE----EEC---CTH----------H---HHHHHGGGS
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEE----ecCcHHHHH----------H---HHHhcCHHH
Confidence 578999999999999999987764433221000110 0111111 111000000 0 112234555
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 499 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 499 ReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|....+.+.|.+ ++.|+.++|+.++||+.||.+-+++..+.|++
T Consensus 95 R~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 95 ISIQLLKELLFT-KELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp HHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 554444444443 58999999999999999998776666555543
No 103
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.56 E-value=2.5 Score=38.95 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|++.++.||.+-.. + ...|..|||+.+|+|+.+|++++.
T Consensus 13 ~~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~~l~ 53 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--D-ARLTISELSEQLKKPESTIHFRIK 53 (171)
T ss_dssp -CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4578888888876432 2 468999999999999999986544
No 104
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=80.44 E-value=1.7 Score=35.75 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhccC-CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~-d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|+.++..||...+.-. ++.+.|..|||+.+|+++.+|.+++.+
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 47888888887655322 234489999999999999999866543
No 105
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=80.18 E-value=3.6 Score=32.82 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.+.|..|||+.+|+|+.+|++.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 468999999999999999975443
No 106
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=80.05 E-value=3.6 Score=34.35 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHhcCC-HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 487 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 487 L~~~L~~L~-~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+..++..|. +....||.+-.. .+.|..|||+.+|+|+.+|++.+.
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELGR----ADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----SCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344455554 555666665322 469999999999999999986544
No 107
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=79.86 E-value=5 Score=34.49 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|++.+..|+.+-+ +.+ .+.|..|||+.+|+++.+|..++.
T Consensus 22 ~gl~~~~~~il~~L~-~~~-~~~t~~ela~~l~~~~stvs~~l~ 63 (152)
T 1ku9_A 22 HGLNKSVGAVYAILY-LSD-KPLTISDIMEELKISKGNVSMSLK 63 (152)
T ss_dssp TTCCHHHHHHHHHHH-HCS-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCChhHHHHHHHHH-HcC-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 368999999887764 222 579999999999999999975543
No 108
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=79.85 E-value=5.7 Score=34.71 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=37.3
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 486 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 486 ~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.+...+ ..|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 29 ~~~~~~~~~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 29 FYEKKLKQFGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444 3599999998887654 268999999999999999998655443
No 109
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=79.84 E-value=5 Score=33.12 Aligned_cols=50 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 486 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 486 ~L~~~L~~L~-~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+..++..|. +.-..||.+-. + .++|..||++.+|+|+.+|++ .+++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~----~L~~L~~ 62 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV---E-GEFSVGELEQQIGIGQPTLSQ----QLGVLRE 62 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH---T-CCBCHHHHHHHHTCCTTHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH---h-CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3445555555 44444554433 2 469999999999999999975 4455544
No 110
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=79.79 E-value=5.4 Score=32.57 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=32.7
Q ss_pred HHHHHhcCC-HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 487 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 487 L~~~L~~L~-~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+..++..|. +....||.+- .+ .+.|..|||+.+|+|+.+|++ .+++|++
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L---~~-~~~~~~ela~~l~is~~tvs~----~L~~L~~ 62 (98)
T 3jth_A 13 AVVLLKAMANERRLQILCML---HN-QELSVGELCAKLQLSQSALSQ----HLAWLRR 62 (98)
T ss_dssp HHHHHHHHCSHHHHHHHHHT---TT-SCEEHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH---hc-CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 444555554 4444555433 23 589999999999999999974 4555554
No 111
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=79.69 E-value=6 Score=34.63 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=37.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 29 ~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 29 SAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444 3699999988876543 35799999999999999999865543
No 112
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=79.68 E-value=2 Score=36.19 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
..+.+....||...+- .|+..|..|||+.+|||+.+|+ +++++|..
T Consensus 14 ~~~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~ 59 (110)
T 1q1h_A 14 SLLGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVR----KKLNLLEE 59 (110)
T ss_dssp TTSCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred HHcChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3355666677765542 3357999999999999999998 56667765
No 113
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=79.43 E-value=2.8 Score=34.81 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+|....||..-.. + .++|..|||+.+|+|+.+|++.++.
T Consensus 26 ~~~Rl~IL~~l~~--~-~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYK--H-KALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHH--H-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--C-CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4666677732221 1 4799999999999999999876553
No 114
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=79.29 E-value=6.3 Score=33.59 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+ ..|++.+..||..-+. ..+.|..+||+.+|+++.+|.+++.+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 344555666 3599999998877653 24789999999999999999865544
No 115
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=79.28 E-value=6.6 Score=33.21 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=32.8
Q ss_pred HHHHHhc-CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 487 VRNLLTL-LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 487 L~~~L~~-L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+..++.. .++.+..||.+-.. .+.|..|||+.+|+|+.+|.+.+++
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334433 35677777776553 4799999999999999999865543
No 116
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=79.26 E-value=5.4 Score=34.53 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=37.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 334555553 589999988877653 24799999999999999999865544
No 117
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=79.16 E-value=6 Score=34.45 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+. .|++.|..||..-+. .+.+.|..|||+.+|+++.+|..++.+
T Consensus 24 ~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 24 VLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 3445555553 589999998886542 225689999999999999999865443
No 118
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.15 E-value=1.1 Score=42.02 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPK--SLSEVGNIFGLS-KERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~--Tl~EIAe~LGIS-rerVRqie~R 536 (558)
.|+++|++++..---+-...++ |..|+|+.+|++ +.+|++++.+
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 5888888776543221111356 999999999999 9999988763
No 119
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=79.06 E-value=5.3 Score=34.85 Aligned_cols=48 Identities=4% Similarity=0.007 Sum_probs=36.5
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 486 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 486 ~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 29 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 29 YADQNAASLGLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444443 699999998877654 25799999999999999999865544
No 120
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=78.98 E-value=5.6 Score=34.07 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCC---CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 484 RQHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 484 ~e~L~~~L~~L~~rEReVL~LRyGL~d~---e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
...|...+..|++.|+.|..+-. ... ..+|..|||+..|+|..+|-+..+
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil--~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 57 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFIL--NYPHKVVNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHH--HCHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH--hCHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Confidence 34677888999999999977543 321 479999999999999999975543
No 121
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.95 E-value=5 Score=34.44 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.+..||..-+. .+.+.|..+||+.+|+++.+|..++.+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 23 RAELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 334455553 589999988877632 236899999999999999999865443
No 122
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=78.91 E-value=4.1 Score=35.24 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=38.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 21 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 73 (140)
T 3hsr_A 21 IIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKK 73 (140)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3344555553 599999888876542 46899999999999999999865544
No 123
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=78.89 E-value=4.8 Score=34.95 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+++.+-.-++... ++|.+|+|+.+|||+.+|++++..
T Consensus 69 ~~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 446666555555554 699999999999999999999874
No 124
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=78.67 E-value=11 Score=32.28 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=48.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHH-
Q 008652 421 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKER- 499 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~~d~~~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~rER- 499 (558)
-+..+||+.+|++...|..++......-.. . .... | ..|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~-~---------------~~gr--~-----------------~~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTS-K---------------RAPR--R-----------------KALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCC-C---------------CCCC--C-----------------CSSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCc-C---------------CCCC--C-----------------CcCCHHHHH
Confidence 478999999999999999988743211000 0 0000 0 01222222
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHhC--CCHHHHHHHHHHH
Q 008652 500 CIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRA 537 (558)
Q Consensus 500 eVL~LRyGL~d~e~~Tl~EIAe~LG--ISrerVRqie~RA 537 (558)
.|+.+.-. ...|..+|+..|| +|.++|++++.+.
T Consensus 68 ~i~~~~~~----~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 68 NVIRAASN----SCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp HHHHHHHH----CCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 23333111 4589999999999 8999999988753
No 125
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=78.07 E-value=2.5 Score=33.48 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999875
No 126
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.99 E-value=3.9 Score=36.12 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. +.+.|..|||+.+|+++.+|..++.+
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 599999999877663 25799999999999999999865544
No 127
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=77.86 E-value=3.6 Score=38.78 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+++.++.||.+-. + .+.|..|||+.+|+|+.+|++.+.
T Consensus 18 ~d~~~~~IL~~L~---~-~~~s~~eLA~~lglS~stv~~~l~ 55 (192)
T 1uly_A 18 LEDTRRKILKLLR---N-KEMTISQLSEILGKTPQTIYHHIE 55 (192)
T ss_dssp HSHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 6788888887654 2 479999999999999999986654
No 128
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=77.82 E-value=6.2 Score=34.26 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 486 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 486 ~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+...+ ..|++.+..||..-+. +.+.|..+||+.+|+++.+|..++.+
T Consensus 28 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 28 AVERGTLREGVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3699999988877654 24799999999999999999765443
No 129
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=77.73 E-value=1.8 Score=33.82 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.|++|||+.+|||+.+|+++++.-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 488999999999999999998743
No 130
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=77.41 E-value=4.1 Score=35.54 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=36.9
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 485 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 485 e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+...+ ..|++.+..||..-+. +.+.|..+||+.+|+++.+|.+++.+
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 24 PEMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 4799999998877653 24789999999999999999865443
No 131
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=77.23 E-value=2.8 Score=31.66 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999998863
No 132
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=77.18 E-value=4.4 Score=35.01 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 23 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 23 HLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 344555553 589999998877653 15899999999999999999865543
No 133
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=77.09 E-value=5.5 Score=34.78 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+ ..|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 33 HKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 34445554 3589999988876653 25799999999999999999865544
No 134
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=77.01 E-value=4.3 Score=35.87 Aligned_cols=51 Identities=2% Similarity=-0.014 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 35 ~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 35 GQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445555554 599999998877654 26799999999999999999865544
No 135
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=76.76 E-value=2.9 Score=31.32 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998764
No 136
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=76.74 E-value=4.4 Score=36.35 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 799999998877653 24799999999999999999865543
No 137
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.72 E-value=5.1 Score=35.01 Aligned_cols=48 Identities=8% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 485 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 485 e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+...+ ..|++.|..||..-. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 25 ~~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (151)
T 3kp7_A 25 KLLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKK 74 (151)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 369999998887652 37899999999999999999865544
No 138
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=76.70 E-value=2.6 Score=31.23 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 139
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=76.64 E-value=4 Score=35.38 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888876653 248999999999999999998655543
No 140
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=76.43 E-value=2.9 Score=33.33 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.++++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 141
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=76.40 E-value=3.3 Score=42.02 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=38.5
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 491 L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
|+.||+.-+++-.+|.- .++.||+|+|+.++||++.|..++.|-.
T Consensus 241 l~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 241 LENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp GGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 47899999999999875 4789999999999999999987765543
No 142
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=76.37 E-value=6.3 Score=34.14 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++....||.+-. + .+++..|||+.+|+|+.+|++.++
T Consensus 45 ~~~rl~IL~~L~---~-~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 45 DPNRLRLLSLLA---R-SELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp CHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455566776543 2 478999999999999999986543
No 143
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=76.19 E-value=5.1 Score=35.40 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...|. .|+..|-.||.+-+. ..+.+.|..|||+.+|+++.+|..++.+
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTF-SKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHT-SGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445666664 599999999887653 2224689999999999999999865543
No 144
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=76.17 E-value=6.8 Score=33.85 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 485 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 485 e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 18 ~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 18 NVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444455 3589999998877653 14699999999999999999865443
No 145
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.05 E-value=7.1 Score=33.65 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. +.+ |..|||+.+|+++.+|.+++.+
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHH
Confidence 789999999887664 234 9999999999999999865544
No 146
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=75.97 E-value=6.6 Score=34.81 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+. .|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344555553 699999998877654 25799999999999999999865544
No 147
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=75.93 E-value=3.2 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 148
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=75.86 E-value=3.6 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 149
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=75.55 E-value=2.9 Score=35.52 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|++|+|+.+|||+.+|+++++.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 6899999999999999999999863
No 150
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=75.54 E-value=2.4 Score=33.43 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|++++..
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999863
No 151
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=75.53 E-value=3.3 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5799999999999999999999863
No 152
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=75.22 E-value=26 Score=28.90 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 407 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 407 ~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.++...+.......++.++||+.+|+++..+..+...
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444445556666789999999999999999888763
No 153
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=75.20 E-value=3.9 Score=32.35 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999874
No 154
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=75.07 E-value=1.7 Score=34.74 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|+.++|+.+|||+.+|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999988765
No 155
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.03 E-value=3.9 Score=35.18 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. +.+.|..+||+.+|+++.+|..++.+
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 589999888877653 25799999999999999999865443
No 156
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=75.02 E-value=4.5 Score=34.13 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHhcCCH-HHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 487 VRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 487 L~~~L~~L~~-rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+..++..|.. ....||.+-. + .+.|..|||+.+|+|+.+|++. +++|++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~---~-~~~s~~eLa~~lgis~stvs~~----L~~L~~ 64 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA---Q-GERAVEAIATATGMNLTTASAN----LQALKS 64 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT---T-CCEEHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH---c-CCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3344444443 3345665433 2 5789999999999999999854 455554
No 157
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=74.97 E-value=3.1 Score=33.50 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6799999999999999999999864
No 158
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.72 E-value=2.6 Score=32.88 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+++|+.+|||+.+|.++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4699999999999999999999863
No 159
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=74.67 E-value=5.5 Score=34.27 Aligned_cols=50 Identities=4% Similarity=-0.041 Sum_probs=37.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.+..||..-+. ..+.|..+||+.+|+++.+|.+++.+
T Consensus 15 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 15 DSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 344555553 589999888876653 24789999999999999999865444
No 160
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=74.58 E-value=4.4 Score=34.96 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++....||.+-.. ..++|..|||+.+|+|+.+|++.+.
T Consensus 41 ~~~rl~IL~~L~~---~~~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 41 DENRAKITYALCQ---DEELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp SHHHHHHHHHHHH---SSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4555667765441 1579999999999999999986654
No 161
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.56 E-value=4 Score=30.61 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIF-----GLSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~L-----GISrerVRqie~ 535 (558)
+...|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3689999999999 999999997776
No 162
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=74.41 E-value=3.4 Score=34.08 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|+.|+|+.+|||+.+|.+++..
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999874
No 163
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=74.30 E-value=2.8 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999999864
No 164
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=74.17 E-value=4.5 Score=34.86 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=32.5
Q ss_pred cCCHHHH-HHHHHHhccCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKER-CIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rER-eVL~LRyGL~d~e~-~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
.+++.++ +|+.+.+. .+ .+..+||+.|||++.+|+.+.+..-..+.
T Consensus 7 ~~t~e~K~~iv~~~~~----~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE----NPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp CCCHHHHHHHHHHHHH----CTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred eCCHHHHHHHHHHHHH----CCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 4677776 45655543 34 45569999999999999999877555443
No 165
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=74.13 E-value=4.4 Score=35.65 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=37.8
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 485 QHVRNLLT---LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 485 e~L~~~L~---~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
..+...+. .|++.+..||..-+. .+.+.|..|||+.+|+++.+|.+++.+-
T Consensus 33 ~~~~~~l~~~~~l~~~~~~iL~~L~~--~~~~~~~~ela~~l~i~~~tvs~~l~~L 86 (160)
T 3boq_A 33 GDLNRQLLDETGLSLAKFDAMAQLAR--NPDGLSMGKLSGALKVTNGNVSGLVNRL 86 (160)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHH--CTTCEEHHHHHHHCSSCCSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCCChhhHHHHHHHH
Confidence 34444443 699999999887642 2357999999999999999998655443
No 166
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=74.01 E-value=3.6 Score=32.28 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+++|+.+|||+.+|+++++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 167
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=73.76 E-value=8.9 Score=33.93 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhccCC--CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 485 QHVRNLLT--LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 485 e~L~~~L~--~L~~rEReVL~LRyGL~d--~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+...+. .|++.|-.||..-+...+ +.++|..|||+.+|+++.+|..++.+
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 34555553 599999998877664332 24689999999999999999876655
No 168
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=73.63 E-value=2.8 Score=36.60 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHhcc-CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 494 L~~rEReVL~LRyGL-~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
|++.+..+|..-+.+ ..+.+.|..+||+.+|||+.+|++++.
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 445544544443322 122579999999999999999986544
No 169
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=73.25 E-value=4 Score=32.44 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESR 536 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~R 536 (558)
..|++.|..||..-+. ..+.|..||++.++ ++..+|..++.+
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4689999999887654 25799999999997 799999865543
No 170
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=73.06 E-value=2.3 Score=34.50 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.+.|..|||+.||||..+||..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999986544
No 171
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.94 E-value=3.4 Score=35.38 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHH
Confidence 589999888877653 24799999999999999999865443
No 172
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=72.85 E-value=2.5 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|..+ |..|||+.||||+.+|| +|+++|..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34555 99999999999999998 57777765
No 173
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=72.83 E-value=4.8 Score=30.41 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFG--LSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LG--ISrerVRqie~R 536 (558)
.++|.+++|+.+| +|+.+|.+++..
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5799999999999 999999999874
No 174
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=72.80 E-value=4.1 Score=31.87 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999863
No 175
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=72.75 E-value=2.3 Score=33.52 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|+++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4689999999999999999999863
No 176
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=72.52 E-value=14 Score=33.45 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999996 66677765
No 177
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=72.49 E-value=2.8 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+|+|+.+|||+.+|++++..
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4699999999999999999999864
No 178
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.15 E-value=3.2 Score=34.70 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=33.2
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|++.|..|+..-+.. +.++.+.+||++.+|++..+|..++.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt~iLk 58 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINKILK 58 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 46788888888776632 23689999999999999999875443
No 179
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=72.15 E-value=3.3 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999863
No 180
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.81 E-value=6 Score=31.38 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.++++...||.+-.. .+ .+.|..||++.+ +||..||++ .|+.|.+
T Consensus 14 ~~t~~r~~IL~~l~~--~~~~~~s~~el~~~l~~~~~~is~~TVyR----~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE--PDNHHVSAEDLYKRLIDMGEEIGLATVYR----VLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTS--GGGSSBCHHHHHHHHHHTTCCCCHHHHHH----HHHHHHH
T ss_pred CcCHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCCCCHhhHHH----HHHHHHH
Confidence 478888888876542 22 579999999999 999999974 4555544
No 181
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=71.63 E-value=14 Score=34.11 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=34.3
Q ss_pred HhcCCHHHHHHHHH-----HhccC-C----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRL-----RFGIE-D----GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 491 L~~L~~rEReVL~L-----RyGL~-d----~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+...+..+|-.-.+ ++|-. + .-+.|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45678888765444 45420 0 146899999999999999996 66667765
No 182
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=71.62 E-value=4.4 Score=35.64 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 488888888876553 14799999999999999999865543
No 183
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.47 E-value=3.9 Score=35.34 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. .+.+.|..+||+.+|+++.+|.+++.+
T Consensus 32 ~l~~~~~~iL~~l~~--~~~~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDR--LGGDVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHHHHH--TTSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 356677777665542 025899999999999999999865543
No 184
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.34 E-value=4.6 Score=34.37 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=37.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 334445443 589999998877653 25799999999999999999865544
No 185
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=71.33 E-value=5.5 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.++++.
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 186
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=71.25 E-value=9.1 Score=34.35 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+ ..|++.|..||..-+.. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 344455555 35899998888766531 25799999999999999999865443
No 187
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=71.13 E-value=2.7 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.+++..
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 188
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=70.79 E-value=4.3 Score=31.04 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 189
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=70.79 E-value=4.5 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 6799999999999999999999864
No 190
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=70.68 E-value=4.5 Score=33.71 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 191
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=70.09 E-value=4.5 Score=33.35 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+++|+.+|||+.+|++++..
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 192
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=69.91 E-value=7.6 Score=34.36 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=37.0
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 485 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 485 e~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
..+...+ ..|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 40 ~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 40 SELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 3699999998877653 14899999999999999999865544
No 193
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=69.86 E-value=5.6 Score=35.50 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+...+...+. .|++.|..||..-+.. ++.+.|..|||+.+|+++.+|.+++.+
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSV-HPEGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTSCEEHHHHHHHC---CTHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3444555553 5999999988766542 236899999999999999999865544
No 194
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=69.53 E-value=3.9 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34566 88999999999999998 67778865
No 195
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=69.31 E-value=12 Score=33.23 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+..+...|. .|++.+-.||..-+. .+++.+..|||+.+|+++.+|..++.+
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~--~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINR--LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHH--SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH--cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344555553 589999888866542 236789999999999999999865543
No 196
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=69.20 E-value=5.4 Score=36.25 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=38.3
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 484 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 484 ~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+...+. .|++.+..||..-+.-+++.+.|..|||+.+|+++.+|.+++.+
T Consensus 55 ~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 55 GREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334555553 59999999988776422222499999999999999999865543
No 197
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=69.16 E-value=4.1 Score=34.81 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3556 99999999999999997 67777765
No 198
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=69.05 E-value=5.5 Score=34.26 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|++|+|+.+|||+.+|.+++..
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999975
No 199
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=68.88 E-value=6.5 Score=36.53 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+|.+.|+.+-. .++.+.|..|||+.+|||+.+|++.+.
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 56666666543 123569999999999999999987665
No 200
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=68.21 E-value=5.2 Score=34.78 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.++++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999873
No 201
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=68.12 E-value=4.2 Score=35.03 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=36.7
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 486 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 486 ~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.+...+. .|++.|-.||..-+. .++.+.|..|||+.+|+++.+|.+++.
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~ 75 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 3444443 699999998887765 222579999999999999999875543
No 202
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=67.99 E-value=4.9 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++....||..-.. ..+.|..|||+.+|+|+.+|.+++.
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4556666664431 1579999999999999999986544
No 203
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=67.98 E-value=5.1 Score=31.40 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.+ |..++|+.+|||+.+|+++++.-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 46 99999999999999999999763
No 204
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=67.84 E-value=20 Score=32.30 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999996 66667765
No 205
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=67.36 E-value=51 Score=27.32 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 408 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 408 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
++...+.......++.++||+.+|+++..+..+...
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444455566789999999999999999888763
No 206
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=67.26 E-value=77 Score=29.12 Aligned_cols=177 Identities=12% Similarity=0.115 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHH
Q 008652 323 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 402 (558)
Q Consensus 323 I~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~ 402 (558)
+..-..++..++.++ |++ +-+.+.-.-+++-+...+.-+|.+....+.-.+.-+.+
T Consensus 9 l~~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr------------------- 64 (200)
T 1ais_B 9 LAFALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACR------------------- 64 (200)
T ss_dssp HHHHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHH-------------------
Confidence 334455556666655 333 55666666777766666666776655554444332221
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCC-CCCCcchhhhcccCCCCChhHHHHHH
Q 008652 403 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQ 481 (558)
Q Consensus 403 l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~i~-~d~~~~l~e~i~d~~~~~pe~~le~~ 481 (558)
..|...+..||+...|++..++..........+.++-+.. .+....+..+...-+. +++ +. +
T Consensus 65 -------------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l--~~~-v~-~ 127 (200)
T 1ais_B 65 -------------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL--SEK-VR-R 127 (200)
T ss_dssp -------------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC--CHH-HH-H
T ss_pred -------------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC--CHH-HH-H
Confidence 1234678899999999999888765443222222222210 0111111112111111 111 11 1
Q ss_pred HHHHHHHHHHh-----cCCHHHHH--HHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008652 482 LMRQHVRNLLT-----LLNPKERC--IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 541 (558)
Q Consensus 482 ~~~e~L~~~L~-----~L~~rERe--VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKL 541 (558)
.....++.++. .-+|.--- .|.+--.+. |.+.|++||++..|++..+|++..+.-.+.|
T Consensus 128 ~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~-~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 128 RAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE-GEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 12223333332 22333221 222211112 3789999999999999999987655444443
No 207
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=67.25 E-value=5 Score=35.33 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34666 99999999999999998 57777764
No 208
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=67.18 E-value=3.4 Score=35.02 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=34.2
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 537 (558)
Q Consensus 491 L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 537 (558)
+..|++.|..||..-+. +.+.|..|||+.+| +++.+|..++.+-
T Consensus 5 ~~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L 52 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRL 52 (123)
T ss_dssp CCCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHH
Confidence 35688999888876543 25899999999999 8999998655543
No 209
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=67.12 E-value=4.8 Score=34.08 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+|+|+.+|||+.+|++++..
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999763
No 210
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=67.11 E-value=6.1 Score=33.94 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.+..||..-+. +.+.|..|||+.+|+++.+|.+.+.+
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 699999988877653 24689999999999999999765443
No 211
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=66.99 E-value=19 Score=32.50 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHhcCCHHHHHHHHHHhccC-CC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 490 LLTLLNPKERCIVRLRFGIE-DG---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 490 ~L~~L~~rEReVL~LRyGL~-d~---------e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.+...+..+|-.-.+..... .| -+.|.++||..+|+|+++|. |++++|++.
T Consensus 106 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 166 (195)
T 3b02_A 106 HLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRRE 166 (195)
T ss_dssp HHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 34567788776433322111 01 24899999999999999986 667777753
No 212
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.79 E-value=5.7 Score=34.04 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++....||.+-. + .+.+..|||+.+|+|+.+|++.++
T Consensus 20 ~~~r~~IL~~L~---~-~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 20 DPTRCRILVALL---D-GVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp SHHHHHHHHHHH---T-TCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355556766533 2 468999999999999999985443
No 213
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=66.74 E-value=11 Score=34.65 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHH--hcc---CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLR--FGI---EDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LR--yGL---~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..+++..+.-..++ -++ ++++++|..|||+.+|||+.++.+...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45676666554322 222 133479999999999999999999776
No 214
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=66.74 E-value=5.7 Score=33.61 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.++++.
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999873
No 215
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=66.65 E-value=5.4 Score=36.72 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+|+|..+||+.||+|+.+|++++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999998764
No 216
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=66.64 E-value=5.3 Score=37.34 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+++. +-.+|-. .++|++|+|+.+|||+.+|.++++.
T Consensus 90 ~s~~~--lk~lR~~----~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHEM--FGDWMHR----NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHHH--HHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcHH--HHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 44443 4444544 6799999999999999999999874
No 217
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=66.64 E-value=4.7 Score=32.97 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHH----HHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEV----GNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EI----Ae~LGISrerVRqie~R 536 (558)
.|++.|..||..-+. ..+.|..|| |+.+|+++.+|.+++.+
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~ 49 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKF 49 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467777777766543 357999999 89999999999865543
No 218
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=66.50 E-value=4.9 Score=35.16 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.6
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34666 99999999999999998 57777765
No 219
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=66.25 E-value=5.8 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|+++++.
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999974
No 220
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=66.14 E-value=26 Score=32.09 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+++|. |++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4799999999999999996 66677765
No 221
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=66.08 E-value=23 Score=32.03 Aligned_cols=50 Identities=20% Similarity=0.095 Sum_probs=33.0
Q ss_pred HHhcCCHHHHHHHHHHhccC--C--------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 490 LLTLLNPKERCIVRLRFGIE--D--------GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 490 ~L~~L~~rEReVL~LRyGL~--d--------~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+...+..+|-.-.+..... + .-+.|.++||..+|+|+++|. |++++|++
T Consensus 113 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 113 RLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 34567777775433322111 0 024899999999999999996 66667765
No 222
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=66.08 E-value=4.9 Score=37.90 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=24.9
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 500 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 500 eVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|+.++- +|+|..+||+.||+|+.+|.+++.
T Consensus 167 ~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 167 RVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4555543 679999999999999999987654
No 223
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=66.04 E-value=12 Score=34.11 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+++|. |++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 7899999999999999986 66677765
No 224
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=65.70 E-value=6.8 Score=34.02 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 486 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 486 ~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+...+ ..|++.|..||..-+. .++.+.|..|||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~~~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 29 SADARLAELGLNSQQGRMIGYIYE-NQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 344444 3699999999887664 2225899999999999999999755443
No 225
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=65.57 E-value=4.8 Score=31.13 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.-++.+|+++.+|||+.+|.+..++.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 34699999999999999999988764
No 226
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=65.48 E-value=6.8 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|||+.+|.+++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999873
No 227
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.42 E-value=6.9 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|..+ |..++|+.||||+.+|| +|+..|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4566 69999999999999998 67777765
No 228
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=65.41 E-value=6.8 Score=31.28 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008652 515 SLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 515 Tl~EIAe~LGISrerVRqie~R 536 (558)
+..++|+.||||+.+|++.+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999753
No 229
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=65.38 E-value=8.9 Score=36.45 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=35.0
Q ss_pred HHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 489 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 489 ~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
+.-.-|++.||-.=..++ |+.|...+.+++|+.+|||+..|...+.-|
T Consensus 19 N~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 19 SHYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp ----CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 334567778877666666 566678899999999999999998766554
No 230
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=65.11 E-value=5.6 Score=36.85 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999996 66667765
No 231
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=64.93 E-value=4.6 Score=33.78 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.|..+||..+||+..+|+++..+.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999988764
No 232
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=64.75 E-value=12 Score=36.54 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=36.0
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 490 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 490 ~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.-..|++.+..||..-.. ..+.|..|||+.+|+++.+|.++ +++|.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~---~~~~s~~eLA~~lglsksTv~r~----L~~Le~ 192 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE---TKGTGITELAKMLDKSEKTLINK----IAELKK 192 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH---HTCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 345799999999986432 15799999999999999999754 455544
No 233
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=64.59 E-value=5.3 Score=34.49 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
.|++.+..||..-+. ..+.|..+||+.+|+++.+|.+++.+-.
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 488888888776553 1478999999999999999986554433
No 234
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=64.58 E-value=4.6 Score=32.99 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHH-HHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKE-RVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISre-rVRqie~ 535 (558)
.+.|..+||+.||||.. .||+.+.
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 47899999999999999 9997654
No 235
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=64.38 E-value=9.3 Score=33.89 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 540 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 540 (558)
.|.++|... | .|.+..|+|..+|+|..+|++|.++..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455666654 4 47899999999999999999999876654
No 236
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=64.34 E-value=4.5 Score=32.39 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|.+++..
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 237
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=64.33 E-value=6.5 Score=33.00 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+++|+.+|||+.+|++++..
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999999874
No 238
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=64.28 E-value=8.3 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie 534 (558)
.+ |+.++|+.+|||..+|.+++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 46 99999999999999999987
No 239
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=64.27 E-value=6 Score=36.75 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36799999999999999996 66777776
No 240
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=63.98 E-value=6.3 Score=32.08 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKER-VRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrer-VRqie~R 536 (558)
.+.|..|||+.+|+++.+ |.+++.+
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHH
Confidence 479999999999999999 8765544
No 241
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=63.54 E-value=5.2 Score=34.20 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHHhcCC-HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008652 487 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 487 L~~~L~~L~-~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 534 (558)
+..++..|. |....||.+-.. .++|..|||+.+|+|+.+|++.+
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is~~tvs~hL 52 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLSR----GPATVSELAKPFDMALPSFMKHI 52 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcCHHHHHHHH
Confidence 334444444 555556665542 57899999999999999998654
No 242
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=63.09 E-value=6.7 Score=32.91 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHH-HHHHHhccCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008652 487 VRNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 535 (558)
Q Consensus 487 L~~~L~~L~~rERe-VL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie~ 535 (558)
+..+++.|..+-+. ||..-+ + .+.++.||++.+ |+|..+|.+.++
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~---~-~~~~~~eLa~~l~~is~~tls~~L~ 50 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT---H-GKKRTSELKRLMPNITQKMLTQQLR 50 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT---T-CCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH---h-CCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 34556667766653 333322 2 579999999999 999999975443
No 243
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=62.97 E-value=5.5 Score=36.42 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 46799999999999999986 66777776
No 244
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=62.82 E-value=6.8 Score=31.77 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|.+++..
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 245
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=62.82 E-value=7.9 Score=31.93 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999876
No 246
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=62.72 E-value=11 Score=30.50 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 418 NHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 418 gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..|+..|||+.+|+|...|+.-|..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 66899999999999999999887764
No 247
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=62.56 E-value=9.3 Score=32.67 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|.++++.
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 248
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=62.48 E-value=1.6 Score=44.81 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
+.+++..||..-|. ..+.|.+|||+.||+|+.+||+.+.+..+
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677777766543 26899999999999999999977765443
No 249
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=62.43 E-value=6.5 Score=36.28 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 46899999999999999996 66667765
No 250
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.30 E-value=14 Score=34.75 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 486 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 486 ~L~~~L--~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 36 ~~~~~l~~~gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 36 DWQQWLKPYDLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3689999999876653 14799999999999999999765443
No 251
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=62.17 E-value=7 Score=39.85 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+..++||.+-. ..+|+..|-+|||+.||||+.+|++ +++.||+.
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k----~i~~L~~~ 46 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKK----VIDQLKLE 46 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHH----HHHHHHHT
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHH----HHHHHHhc
Confidence 34456665542 1234789999999999999999985 55566653
No 252
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=62.17 E-value=9.8 Score=33.29 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=35.0
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 537 (558)
Q Consensus 491 L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 537 (558)
+..|++.|..||..-+.. +.+.|..||++.++ ++..+|..++.+-
T Consensus 4 ~~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 357999999998876531 25799999999998 8999998655543
No 253
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.13 E-value=6.8 Score=36.25 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 176 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999986 66667765
No 254
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=61.86 E-value=8.2 Score=31.14 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999874
No 255
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.70 E-value=6.9 Score=36.96 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 36899999999999999996 66777776
No 256
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=61.66 E-value=24 Score=33.57 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+++|. |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999996 66677765
No 257
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=61.52 E-value=3.7 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|+.|||+..|||+.+|+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 46999999999999999998764
No 258
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=61.44 E-value=5.9 Score=36.50 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999996 667777764
No 259
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.21 E-value=7.2 Score=36.90 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999996 66677765
No 260
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=61.14 E-value=19 Score=31.07 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 542 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~ 96 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIE 96 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHh
Confidence 58999999887755 3556899999999988 5788888888777777774
No 261
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=61.09 E-value=7.9 Score=36.77 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.4
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+.+ |-.|+|+.||||+.+|| .|++.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 45778 89999999999999998 67777765
No 262
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=61.05 E-value=8.3 Score=33.31 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+.+.|.+|||+.+|||+..|+++ +.+|++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~i----l~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQL----VSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHH----HHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 47899999999999999999854 455654
No 263
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=60.90 E-value=9.6 Score=33.29 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHhcc-CCC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL-~d~-e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.|-.|+..-+.+ +.| ...|..+||+.+|+|..+|.+++.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~ 74 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRR 74 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4677776665554433 222 3479999999999999999865544
No 264
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=60.59 E-value=3.6 Score=31.30 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie 534 (558)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999986
No 265
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=60.57 E-value=8.1 Score=37.24 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+.++..++|+.||||+.+|| +|++.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4578899999999999999998 67777754
No 266
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=60.46 E-value=9.1 Score=35.84 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|+|-|+-....++. + .++|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~-~--~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGREL-A--KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH-H--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888876655542 2 479999999999999999998754
No 267
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.38 E-value=59 Score=27.86 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 372 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 372 TYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.|..+.+.+.+.+.+........++...+..+.-+ ...+...+..+||+.+|++...+..++..
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 35555555566666555444444554444333322 12232358999999999999999888764
No 268
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=60.37 E-value=8.8 Score=33.58 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.++|++|+|+.+|||+.+|.++++.-
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 68999999999999999999999754
No 269
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=59.98 E-value=1.1e+02 Score=32.39 Aligned_cols=35 Identities=31% Similarity=0.620 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhCCCCchHHHHHHcc--CCHHHHHH
Q 008652 276 RLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLKS 310 (558)
Q Consensus 276 ~le~~~~~l~~~~g~~pt~~ewA~a~g--~~~~~L~~ 310 (558)
++.+.+..+...+|++|+..+.|...| ++.+.+..
T Consensus 285 ~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~ 321 (438)
T 1l9z_H 285 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEE 321 (438)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHH
Confidence 344556677778999999999999888 87766543
No 270
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=59.48 E-value=15 Score=31.39 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ .++..+|+..+.+-++||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 48999999887755 3456889999999998 57888999888888888864
No 271
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=59.47 E-value=6.3 Score=34.51 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFG-----LSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~LG-----ISrerVRqie~ 535 (558)
+.++|++|+|+.+| ||+..|.++++
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 46899999999998 99999999986
No 272
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=59.30 E-value=6.5 Score=31.87 Aligned_cols=25 Identities=0% Similarity=0.105 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+..|||+.||||..|||..+.+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999976554
No 273
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=59.29 E-value=7 Score=32.93 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999999864
No 274
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=59.25 E-value=3.8 Score=39.37 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCH--HHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSL--SEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl--~EIAe~LGISrerVRqie~ 535 (558)
.|++.+..+|..-|.+.. .+.|. .+||+.+|+++.+|+.++.
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~ 46 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVS 46 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 577778788777665543 24555 9999999999999985443
No 275
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=59.25 E-value=38 Score=28.62 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+...+.+.+........++...+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 4445555555555555444444554444433332 222223568999999999999999888753
No 276
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=59.10 E-value=7.7 Score=36.56 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+.++..++|+.||||+..|| .|+++|..
T Consensus 32 pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4578899999999999999998 67888865
No 277
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=59.08 E-value=9.2 Score=29.11 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.3
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 008652 515 SLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 515 Tl~EIAe~LGISrerVRqie 534 (558)
+..+.|+.||||+.++...+
T Consensus 35 n~~~aA~~LGIsr~tL~rkl 54 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 67899999999999987644
No 278
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=58.98 E-value=23 Score=29.48 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIF-GLSKERVRQLESRALYR 540 (558)
Q Consensus 512 e~~Tl~EIAe~L-GISrerVRqie~RALkK 540 (558)
-++|+.+||+.| |....||.....+.-+.
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~ 74 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQL 74 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 589999999999 89999998555444433
No 279
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=58.75 E-value=14 Score=31.06 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHH-HHHHHHhccCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008652 487 VRNLLTLLNPKER-CIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 535 (558)
Q Consensus 487 L~~~L~~L~~rER-eVL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie~ 535 (558)
+..++..+..+-+ .||..-.. .+.+..||++.+ |+++.+|.+++.
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~~----~~~~~~eLa~~l~~is~~tvs~~L~ 58 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELFQ----GTKRNGELMRALDGITQRVLTDRLR 58 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHHH----SCBCHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHh----CCCCHHHHHHHhccCCHHHHHHHHH
Confidence 4456666765544 34443332 479999999999 999999975443
No 280
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=58.63 E-value=32 Score=29.45 Aligned_cols=74 Identities=7% Similarity=0.095 Sum_probs=42.9
Q ss_pred hhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHH
Q 008652 358 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 436 (558)
Q Consensus 358 AiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~s-r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~ 436 (558)
+..+|+... +..|..+++.+.+.+.+.+.. ....++...+..+.-+ ...+ ..+..+||+.+|++...
T Consensus 3 ~M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~t 70 (148)
T 3nrv_A 3 AMQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAA 70 (148)
T ss_dssp --CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHH
T ss_pred ccccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHH
Confidence 344555542 345666667777776665543 2334554444444332 2233 67899999999999999
Q ss_pred HHHHHHh
Q 008652 437 LERLIFI 443 (558)
Q Consensus 437 v~~ll~~ 443 (558)
+..++..
T Consensus 71 vs~~l~~ 77 (148)
T 3nrv_A 71 VSRTVKK 77 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888753
No 281
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=58.54 E-value=7.1 Score=36.52 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
..|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 5799999999999999996 66667765
No 282
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=58.37 E-value=5 Score=36.71 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
+-+|+.|+|+.|||++.+|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 4579999999999999999997653
No 283
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=58.04 E-value=7.5 Score=34.38 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+.|..+||+.||||+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 5689999999999999999864443
No 284
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=57.85 E-value=9 Score=32.19 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998863
No 285
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=57.24 E-value=7 Score=32.27 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999864
No 286
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=57.15 E-value=11 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 537 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 537 (558)
..|++.|..|+..-+- ..+.|..|||+.++ ++..+|..++.+-
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 4689999998887664 24799999999997 5899998665543
No 287
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=56.47 E-value=9.3 Score=31.94 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..++|+.+|||+.+|++++..
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999864
No 288
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=56.40 E-value=11 Score=30.78 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKER----VRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrer----VRqie~R 536 (558)
.++|..|+|+.+|||+.+ |.++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 479999999999999999 8888865
No 289
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=56.30 E-value=6.3 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.-+|.+|+|+.|||++.+|+++...
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 4579999999999999999988754
No 290
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=56.21 E-value=7.7 Score=34.45 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFG-----LSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~LG-----ISrerVRqie~ 535 (558)
+.++|++|+|+.+| ||+..|.++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 46899999999999 99999999986
No 291
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=56.06 E-value=6.9 Score=30.64 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|+.++|+.||||+.+|++++.
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHHH
Confidence 34999999999999999999873
No 292
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=55.80 E-value=12 Score=35.49 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHHHhccC-CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 501 IVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 501 VL~LRyGL~-d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|..-|.|. .+.+.+..+||+.||+|+.+|++.+.
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~ 42 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMK 42 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHH
Confidence 344444443 34689999999999999999985444
No 293
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=55.69 E-value=7.2 Score=36.95 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|+|+.+|+|+.+|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6789999999999999999999875
No 294
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=55.52 E-value=13 Score=32.98 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHhccCC-C-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIED-G-KPKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d-~-e~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
.|++.|--||..-+.+.+ | .+.|.++||+.||++...|.+++.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 588888877766555432 2 5579999999999999999876665444
No 295
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=55.27 E-value=27 Score=28.49 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
+.|+.+||+.+|+|+.++.++.++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 8999999999999999998887766
No 296
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=55.22 E-value=7.3 Score=38.35 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQL 533 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqi 533 (558)
.+.|..+||+..|||+.++...
T Consensus 139 ~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 139 HNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHh
Confidence 6799999999999999999765
No 297
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=55.11 E-value=4 Score=33.99 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|..+ |..|||+.||||+.+|++ |++.|..
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~----al~~L~~ 61 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSR----ALAVLKS 61 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHH----HTTTTTT
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34566 999999999999999985 5555543
No 298
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=55.04 E-value=50 Score=27.79 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+...+.+.+........++...+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 10 RLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYL-------SRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH-------HHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 3444444444444444333334444333333322 223333578999999999999999888764
No 299
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=54.93 E-value=11 Score=34.50 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|++|+|+.+|||+.+|+++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 300
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=54.63 E-value=21 Score=27.58 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 566677777777754321 344678999999999999999998888887764
No 301
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=54.46 E-value=13 Score=35.51 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+.+ +-.++|+.||||+..|| .|++.|..
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 45777 67899999999999998 67777765
No 302
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.31 E-value=18 Score=29.33 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|.-.|-.+.. ......+||+.+|+|+..|.........|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 566777777777754321 344678899999999999999999998888764
No 303
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=54.25 E-value=12 Score=34.39 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|++++|+.+|||+.+|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 304
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=53.97 E-value=15 Score=35.61 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|++-|+.....+.. ..++|.++||+.+|+|+.+|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888776555443 2579999999999999999998764
No 305
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.81 E-value=13 Score=32.19 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIF--GLSKERVRQLESR 536 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L--GISrerVRqie~R 536 (558)
+++-.+.||.+--- + .+.|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~~--~-g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE--E-GNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH--H-SCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--c-CCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 66777778765321 1 389999999999 9999999976543
No 306
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=53.72 E-value=73 Score=28.21 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 372 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 372 TYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.|..+.+.+.+.+.+........++...+..+.-+ ...+...+..+||+.+|++...+..++..
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 35555566666666665544445554444333332 12233578999999999999999888753
No 307
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=53.25 E-value=15 Score=27.87 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 498 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 498 EReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
|+++|..-+-- .+.+..+.|+.||||+.++...++
T Consensus 20 E~~~i~~aL~~---~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 20 EKIFIEEKLRE---YDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHH---TTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44545443321 234688999999999999886543
No 308
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=52.94 E-value=5.7 Score=38.05 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHhccCC-CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d-~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.|++.+..+|..-|.+.. |...+..+||+.||+++.+|.+++.
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~ 46 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 46 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 467777777777776542 2223459999999999999986444
No 309
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=52.69 E-value=21 Score=29.47 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=26.5
Q ss_pred HHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 501 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 501 VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.|.-.+. ++.|+.+||+.+|+|+.++.+..++.
T Consensus 13 ~i~~~~~----~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 13 YITEHFS----EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHTT----SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHhc----CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444554 68999999999999999998877665
No 310
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=52.56 E-value=23 Score=36.32 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 547 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 547 (558)
...|.+|||+..|||..|||+..+.-+..+-..+..
T Consensus 291 ~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~ 326 (345)
T 4bbr_M 291 IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDP 326 (345)
T ss_dssp ------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCH
Confidence 689999999999999999999888777776665543
No 311
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=52.39 E-value=9.7 Score=34.38 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++....||.+-.. .++|..|||+.+|+|+.+|++.+.
T Consensus 57 ~p~R~~IL~~L~~----~~~t~~eLa~~lgls~stvs~hL~ 93 (151)
T 3f6v_A 57 EPTRRRLVQLLTS----GEQTVNNLAAHFPASRSAISQHLR 93 (151)
T ss_dssp SHHHHHHHHHGGG----CCEEHHHHHTTSSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3555556655432 579999999999999999986543
No 312
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=52.16 E-value=20 Score=29.61 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999998887765
No 313
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=52.16 E-value=20 Score=29.76 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 48999999987755 3556889999999988 46778888887777777753
No 314
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=52.15 E-value=11 Score=36.30 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.5
Q ss_pred HHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 501 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 501 VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|+.-.| ..|+.++..++|+.||||+..|| .||++|..
T Consensus 41 I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 41 IIDGTF--RPGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHcCCC--CCcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444433 34578899999999999999998 67777764
No 315
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=52.08 E-value=29 Score=28.06 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|++.+.+-++||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 58999999887765 3556889999999987 26777888777766666643
No 316
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=51.85 E-value=40 Score=28.49 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
-++|+.+||+.||-...||-.-..+.-+.++
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999755544444433
No 317
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=51.69 E-value=14 Score=35.71 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=23.3
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|..+ |..|+|+.+|||+.+|| +|+..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4667 89999999999999998 67777765
No 318
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=51.65 E-value=19 Score=36.34 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 495 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.++...|+.+- .++...|.+|||+.||||+.+|++.+.
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~ 41 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQ 41 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 45666676654 234679999999999999999987554
No 319
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=51.53 E-value=30 Score=27.59 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 480 KQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGK---PKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 480 ~~~~~e~L~~~L~~L~~rEReVL~LRyGL~d~e---~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
.+.+...|. ..++++++.|...--|--|.. ..++.+||+.+|++.+.|.. ++++|+
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~----vL~~lQ 73 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEK----VRQKVL 73 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHH----HHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHH----HHHHHh
Confidence 333444454 368999998877554432323 46899999999999998864 444443
No 320
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=51.49 E-value=9.7 Score=35.74 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSK-ERVRQLESRALYRLKQ 543 (558)
Q Consensus 513 ~~Tl~EIAe~LGISr-erVRqie~RALkKLR~ 543 (558)
+.|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7986 66777765
No 321
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=51.44 E-value=26 Score=25.88 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++.+..+|...|.-+.. ......+||..+|++...|+.....-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4677788888888764321 12345689999999999999998777777665
No 322
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=51.40 E-value=12 Score=35.42 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=28.7
Q ss_pred HHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 501 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 501 VL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|+.-.| ..|+.++..++|+.||||+..|| .|+++|..
T Consensus 29 I~~g~l--~pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 29 LELGTF--VPGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444443 34578899999999999999998 67777765
No 323
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=51.19 E-value=9.6 Score=31.67 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+..|||+.||||..|||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999976543
No 324
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=51.12 E-value=8.7 Score=32.55 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
++|..|+|+.+|||..++|..+..++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999988754
No 325
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=50.79 E-value=7.3 Score=30.10 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
+|.+|+|+.||||+.||++....++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5789999999999999998876643
No 326
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=50.67 E-value=55 Score=26.89 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008652 421 PDKEDLARRVGITVEKLERLIFIT 444 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~~ 444 (558)
-+..+||..+|++...|..++...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999988753
No 327
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=50.53 E-value=1.2e+02 Score=26.46 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 417 GNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 417 ~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.+...+..+||+.+|++...+..++..
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344567789999999999999888764
No 328
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=50.25 E-value=22 Score=29.89 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 542 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhc
Confidence 48999999887755 3556889999999988 4677888888777777775
No 329
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.23 E-value=30 Score=27.44 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhccCC---C--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIED---G--KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d---~--e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|--+. . ......+||..+|++...|+........|.|..
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 67778888888885210 0 012456899999999999999998888888764
No 330
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=50.17 E-value=15 Score=35.42 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|..+ |..|+|+.||||+.+|| +|+..|..
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 60 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVR----QALSNLVN 60 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34666 89999999999999998 57777765
No 331
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.11 E-value=1.5e+02 Score=26.99 Aligned_cols=36 Identities=39% Similarity=0.570 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhCCCCchHHHHHHccCCHHHHHHH
Q 008652 276 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 311 (558)
Q Consensus 276 ~le~~~~~l~~~~g~~pt~~ewA~a~g~~~~~L~~~ 311 (558)
++.+....+....|+.|+..+.|...|++.+.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (239)
T 1rp3_A 100 RIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKT 135 (239)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHH
Confidence 344566677778899999999999999987766443
No 332
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=49.77 E-value=49 Score=25.34 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.-
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3577788888888864322 2345679999999999999999988888887654
No 333
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.75 E-value=3.5 Score=37.18 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..|||+.+|||+.+|.+++..
T Consensus 13 ~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999998754
No 334
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=49.73 E-value=18 Score=34.08 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 533 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqi 533 (558)
+|++.|+.+--- ..-.|.+|+|+.||||..|||.=
T Consensus 12 eR~~~i~~~l~~---~~~~~~~~la~~~~vs~~TiRrD 46 (190)
T 4a0z_A 12 KRREAIRQQIDS---NPFITDHELSDLFQVSIQTIRLD 46 (190)
T ss_dssp HHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCEeHHHHHHHHCCCHHHHHHH
Confidence 445555555332 24579999999999999999964
No 335
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=49.61 E-value=3.5 Score=38.39 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 499 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 499 ReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
+.|+.++- .|+|..+||+.||||+.||.+++...
T Consensus 149 ~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 149 EQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34555443 67999999999999999999877654
No 336
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=49.55 E-value=15 Score=35.33 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|..+ |..|+|+.+|||+.+|| +|+..|..
T Consensus 25 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 25 QGDKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34667 89999999999999998 57777765
No 337
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=49.54 E-value=67 Score=27.84 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008652 421 PDKEDLARRVGITVEKLERLIFIT 444 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~~ 444 (558)
-+..+||+.+|++...|..++...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999988653
No 338
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=49.31 E-value=9.1 Score=34.39 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie 534 (558)
.+++.+++++..... +.+.+..+||+.+|+|+.+|++.+
T Consensus 139 ~~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 455667777765543 157899999999999999997654
No 339
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=49.24 E-value=19 Score=36.95 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=33.0
Q ss_pred CCHHHHHHHHH--HhccCCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 008652 494 LNPKERCIVRL--RFGIEDGKPKSLSEVGNIF--GLSKERVRQLES 535 (558)
Q Consensus 494 L~~rEReVL~L--RyGL~d~e~~Tl~EIAe~L--GISrerVRqie~ 535 (558)
|++|++.||.. ...+..+++-+.+++++.+ |||..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999983 1113344899999999999 999999996543
No 340
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=48.84 E-value=36 Score=26.30 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 493 LLNPKERCIVRLRFGIEDGKPK----SLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~----Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
.+|+.+..+|.-.|.-.-..++ .-.+||..+|+|...|.........|+++.+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 4788888888887751111222 36789999999999999999999999887543
No 341
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=48.83 E-value=40 Score=31.90 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.++|..++|+.+|||..+|++++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 679999999999999999999975
No 342
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=48.40 E-value=11 Score=35.16 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-++|.++||..+|+|+++|. |++++|++
T Consensus 177 l~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36789999999999999997 55666655
No 343
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=48.20 E-value=24 Score=34.52 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.|-.||..-+. .++.+.|..|||+.+++++.+|..++.+
T Consensus 155 gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITS-QNKNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHT-TTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 699999998877654 2223699999999999999999765544
No 344
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=48.07 E-value=42 Score=29.29 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 486 HVRNLLTLLNPKERCIVRLRFGIEDGK---------PKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 486 ~L~~~L~~L~~rEReVL~LRyGL~d~e---------~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.|-.+--.|+..|+.||.+-...-+.. ..+..|+++.+|++..+..+.++.|.++|.+.
T Consensus 11 ~Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 11 KLIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hHhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 455666789999999988866543221 25689999999999999999999999999753
No 345
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.06 E-value=94 Score=26.79 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 371 ASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 371 STYA~~wIr~aI~~aIr~~s-r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..|..+.+.+.+.+.+.+.. ....++...+..+..+ . ..+ ..+..+||+.+|++...+..++..
T Consensus 22 l~~~l~~~~~~~~~~~~~~l~~~~~lt~~~~~iL~~l-------~-~~~-~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 22 LPYRLSVLSNRISGNIAKVYGDRYGMAIPEWRVITIL-------A-LYP-GSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------H-HST-TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-------H-hCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555555444332 2234444333333332 1 123 678999999999999999888753
No 346
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=47.79 E-value=15 Score=30.66 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 542 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 48999999887755 3556889999999998 5677788887777777764
No 347
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.77 E-value=1.2e+02 Score=25.31 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
+..+.+...+.+.+........++...+..+..+ ... +...+..+||+.+|++...+..++..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~~-~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 13 TLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHL-------ARH-RDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHH-------HHC-SSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHc-CCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 3344444455555544433334544444333332 112 23578999999999999999888764
No 348
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=47.59 E-value=20 Score=34.23 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++...+.|..-|.|. ++.+..+||+.||+|..+|+ .++++|++
T Consensus 12 ~ls~s~EdYLk~I~~L~--~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 12 YPEYTVEDVLAVIFLLK--EPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp --CCCHHHHHHHHHHTT--SCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--CCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 35555555566666552 57899999999999999998 56667765
No 349
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=47.58 E-value=8.5 Score=34.59 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+.|.++||..+|+|+++|.++.++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999999999866554
No 350
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=47.49 E-value=15 Score=35.32 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 510 DGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 510 d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.+.++|+.|||+.+|+++.+|.+++.
T Consensus 18 ~~~~~s~~ela~~~gl~~stv~r~l~ 43 (241)
T 2xrn_A 18 HPHGLSLAAIAQLVGLPRSTVQRIIN 43 (241)
T ss_dssp CTTCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33579999999999999999986554
No 351
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=47.34 E-value=17 Score=35.25 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=25.7
Q ss_pred cCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 508 IEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 508 L~d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+..|..+ |..|+|+.+|||+.+|| +|+..|..
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3344677 99999999999999998 67777754
No 352
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=47.24 E-value=18 Score=35.77 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.7
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|..+ |..|+|+.||||+.+|| +|+..|..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4667 99999999999999998 67777765
No 353
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.10 E-value=17 Score=35.05 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.++|+.|||+.+|+++.+|.+++.
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999999986654
No 354
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=46.87 E-value=55 Score=25.12 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 567777778777764422 34456789999999999999999888888877543
No 355
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=46.54 E-value=31 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|..+||+.+|||..+|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 4689999999999999999999973
No 356
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=46.45 E-value=14 Score=30.28 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 496 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 496 ~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.-|+.+|..-+-.. +.+..+.|+.||||+.+++..++
T Consensus 50 ~~E~~~i~~aL~~~---~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRHT---QGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHT---TTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCHHHHHHHHCcCHHHHHHHHH
Confidence 44666665544322 33667999999999999976543
No 357
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=46.43 E-value=24 Score=34.17 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+.++|+.|||+.+|+++.+|..++.
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999999986554
No 358
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=46.40 E-value=30 Score=26.72 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|..-.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 566677777777753321 12245789999999999999999888888876543
No 359
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=46.36 E-value=21 Score=27.99 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008652 515 SLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 515 Tl~EIAe~LGISrerVRqie~R 536 (558)
|+.++|+.+|||+.+|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 360
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.32 E-value=34 Score=27.09 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 566666777776653221 12246789999999999999999888888887653
No 361
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=46.28 E-value=31 Score=31.45 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHhccC---CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIE---DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~---d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.|+.+.+.-|+.-..|. ++.+.|.+|||+.+|+|+..|++++ .+|++
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil----~~L~~ 70 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLI----GPLRN 70 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHH----HHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 45555555444433332 3467999999999999999888654 45554
No 362
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=46.25 E-value=71 Score=27.02 Aligned_cols=62 Identities=5% Similarity=0.141 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+.+.+.+.+........++...+..+.-+. .. ...+..+||+.+|++...+..++..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~~--~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIE-------AN--EPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHH-------HH--SSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------Hc--CCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 44445555555565555444445554444444332 11 2568999999999999999888753
No 363
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.51 E-value=29 Score=26.82 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 566666777777653221 1224578999999999999999988888887643
No 364
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=45.45 E-value=53 Score=26.37 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHhccCCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008652 494 LNPKERCIVRLRFGIEDGKP----KSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 548 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 548 (558)
++..+..+|.-.|.-+-..+ ..-.+||..+|+|...|......+..|.+..+...
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 56677777776654110012 24578999999999999999999999998876443
No 365
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=45.43 E-value=13 Score=30.72 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~R 536 (558)
++++.++|+..|||+.++..|++.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 589999999999999999998764
No 366
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=45.18 E-value=14 Score=34.93 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=29.5
Q ss_pred HHhcC-CHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 490 LLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 490 ~L~~L-~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
++..| ++....||.+-.. .++|..||++.+|+|..+|.+.++
T Consensus 8 ilkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is~stvs~hLk 50 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLTK----RPYFVSELSRELGVGQKAVLEHLR 50 (202)
T ss_dssp HHHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34444 3555556655432 589999999999999999986543
No 367
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=44.97 E-value=26 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 510 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 510 d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
++...|.+|||+.+|||+..|++++ .+|++
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~kil----~~L~~ 56 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRKIM----SYLKQ 56 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHH----HHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 3467999999999999999888554 45554
No 368
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=44.76 E-value=23 Score=27.59 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhcc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008652 493 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 547 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 547 (558)
.+++.+..+|.-.|.- +.. ....-.+||..+|+|...|.........|.+..+..
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3667777777777731 110 122456899999999999999999999998876544
No 369
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=44.65 E-value=27 Score=31.00 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.++++.||++.+|||+.+|.++++
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 479999999999999999976544
No 370
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=44.49 E-value=34 Score=25.19 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 567777788777753321 12245789999999999999998877777654
No 371
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=44.20 E-value=4.7 Score=37.56 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYR 540 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkK 540 (558)
.|+|..+||+.||+|+.||.+++.+....
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 67999999999999999998876654433
No 372
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=44.12 E-value=40 Score=26.18 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHh---ccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008652 493 LLNPKERCIVRLRF---GIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 548 (558)
Q Consensus 493 ~L~~rEReVL~LRy---GL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 548 (558)
.+++.+..+|.-.| .-+.. ....-.+||..+|+|...|.........|.|......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46778888888887 32111 1224568999999999999999999999998765543
No 373
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=43.86 E-value=37 Score=25.32 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|.
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 3567777788777753321 12246789999999999999998877777664
No 374
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=43.70 E-value=22 Score=34.56 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+.++|+.|||+.+|+++.+|.+++.
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999999986554
No 375
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=43.67 E-value=8.7 Score=32.91 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 500 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 500 eVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
.||....+ ..+|+.|.++.+|||.+.|...+....
T Consensus 41 ~VV~~v~~----g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 41 AVVRGVIY----GLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHHH----TTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35555554 689999999999999999999887653
No 376
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=42.95 E-value=22 Score=30.06 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 542 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999887755 3556899999999988 4677788887777777764
No 377
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=42.90 E-value=11 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
+|..|+|+.+|||..++|..+..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999987654
No 378
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.85 E-value=31 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+...|.+|||+.+|+|+..|++++ .+|++
T Consensus 26 ~~~~s~~~IA~~~~i~~~~l~kil----~~L~~ 54 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSDLYLEQLV----GPLRN 54 (143)
T ss_dssp SCCEEHHHHHHHTTCCHHHHHHHH----HHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 357899999999999998888654 45554
No 379
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=42.72 E-value=34 Score=25.58 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567777888877764321 12245789999999999999988777776653
No 380
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=42.55 E-value=38 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 48999999887655 3556788999999987 35666777776666666643
No 381
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=42.41 E-value=16 Score=30.51 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHH-HHHHHhccCCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008652 489 NLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 535 (558)
Q Consensus 489 ~~L~~L~~rERe-VL~LRyGL~d~e~~Tl~EIAe~L-GISrerVRqie~ 535 (558)
.+++.+..+-+. ||..-+ + .++++.||++.+ |+|..+|.++++
T Consensus 17 ~~l~~l~~~~~~~IL~~L~---~-~~~~~~eL~~~l~gis~~~ls~~L~ 61 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN---R-RIIRYGELKRAIPGISEKMLIDELK 61 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT---T-SCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHH---h-CCcCHHHHHHHcccCCHHHHHHHHH
Confidence 344445555443 333322 2 579999999999 599999986543
No 382
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=42.38 E-value=12 Score=34.34 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp --------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36899999999999999987 55566654
No 383
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=42.29 E-value=36 Score=27.34 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHhccCCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008652 493 LLNPKERCIVRLRFGIEDGKP----KSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 547 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 547 (558)
.+++.+..+|.-.|.-....+ ....+||..+|++...|.........|.|.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 467888888888883111112 2356899999999999999999999999886544
No 384
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=42.18 E-value=53 Score=27.57 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHH-HHhcc--CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 492 TLLNPKERCIVR-LRFGI--EDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 492 ~~L~~rEReVL~-LRyGL--~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
..|++-+-.|+. |...- -.|...++.+||+.+++++.+++..+.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~ 58 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLT 58 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHH
Confidence 347777777766 33321 123568999999999999999985544
No 385
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=41.97 E-value=23 Score=34.55 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+.++|+.|||+.+|+++.+|.+++.
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~ 58 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLL 58 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999999986654
No 386
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=41.78 E-value=15 Score=29.27 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+|..|+|+.+|||..++|..+.+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 478999999999999999999876
No 387
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.54 E-value=81 Score=27.44 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 372 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 372 TYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.|...++.+.+.+.+.....-..++...+..+.-+. . .+ ..+..+||+.+|++...+..++..
T Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~-------~-~~-~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 28 PYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLS-------A-YG-ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-------H-HS-EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-------h-CC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444555555555443333344444444443331 1 22 568999999999999999888753
No 388
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.53 E-value=30 Score=33.76 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.|++.|+.+|..-.-..+|.+.+..++|+.||+++.++...+.+
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 46777777776543223346789999999999999999875554
No 389
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=41.45 E-value=23 Score=28.89 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=17.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie 534 (558)
.+..+.|+.||||+.+++..+
T Consensus 55 GN~s~AA~~LGISR~TLyrKL 75 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 468899999999999987644
No 390
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=41.12 E-value=84 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhcc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++.+..+|.-.|.- +.. ......+||..+|+|...|.........|.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4677888888888864 111 11235688999999999999998888777664
No 391
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=40.81 E-value=46 Score=25.07 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566777777777753321 123457899999999999999988877777653
No 392
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=40.78 E-value=51 Score=27.20 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
.+++.+..+|...|.-+.. ......+||..+|++...|+.....-..|.|+...
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4788888888888863221 12245789999999999999999888888877543
No 393
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.77 E-value=48 Score=26.30 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 3677777888888853221 1123578999999999999999877777777643
No 394
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=40.17 E-value=94 Score=25.86 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+...+...+........++...+..+.-+ . .. ...+..+||+.+|++...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~-~~-~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRI-------H-RE-PGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHH-------H-HS-TTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-------H-Hc-CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555555555444444544434333332 1 12 2578999999999999999888764
No 395
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=39.97 E-value=63 Score=24.72 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|....
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3577788888888863321 12245689999999999999998888777776543
No 396
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=39.88 E-value=43 Score=25.50 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.+++.+..+|...|.-+.. ......+||..+|++...|......-..|.|..
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 3577788888888853221 122456899999999999999998888887754
No 397
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=39.87 E-value=52 Score=26.97 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 407 LEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERLIF 442 (558)
Q Consensus 407 ~ka~~~l~~~~g-r~Pt~eEIA~~lgis~e~v~~ll~ 442 (558)
.++...+.+... ..++.++||+.+|++...+..+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 344444555565 688999999999999999988865
No 398
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=39.87 E-value=42 Score=25.00 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|+
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 3567777888877753321 12235789999999999999998877777664
No 399
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=39.58 E-value=45 Score=32.31 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
.+.|..+||+.+|+++++|+..+.
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~ 200 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKIS 200 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHH
Confidence 589999999999999999986544
No 400
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=39.57 E-value=47 Score=26.14 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 547 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 547 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 566666777777653221 122357899999999999999998888888765543
No 401
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=39.31 E-value=49 Score=26.08 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 495 NPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 495 ~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
+..+..+|.-.|..... .+....+||..+|+|+..|+.....-+.|+|+-.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 34555666666653321 3445688999999999999999999998888643
No 402
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=39.28 E-value=1.9e+02 Score=25.18 Aligned_cols=79 Identities=15% Similarity=-0.016 Sum_probs=56.3
Q ss_pred hhhC-CCCchHHHHHHccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh-hhhcC
Q 008652 286 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS-VEKFK 363 (558)
Q Consensus 286 ~~~g-~~pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirA-iekFD 363 (558)
...| ...|..+.|+.+|++...+-....+-+.-+..++..+..-+..........+.+..+.+...+..++.. +...+
T Consensus 28 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 28 LRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred HHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 3446 468999999999999999998888777878888887777776666666555677777777777666666 44444
Q ss_pred C
Q 008652 364 P 364 (558)
Q Consensus 364 p 364 (558)
+
T Consensus 108 ~ 108 (212)
T 3knw_A 108 W 108 (212)
T ss_dssp -
T ss_pred c
Confidence 3
No 403
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=39.19 E-value=1.5e+02 Score=26.00 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=21.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcC
Q 008652 421 PDKEDLARRVGITVEKLERLIFITR 445 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~~~ 445 (558)
-+..+||+.+|++...|..++....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788999999999999999987543
No 404
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=39.15 E-value=67 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
++.|+++||+.+|+|+.++.++.++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999998877665
No 405
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=39.11 E-value=71 Score=26.17 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=43.3
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Q 008652 333 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 412 (558)
Q Consensus 333 IArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~ 412 (558)
+........++++||.....+.--.--..|.-.-|..|..|...+ |+.+|...
T Consensus 13 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~---------------------------Rl~~A~~l 65 (108)
T 3oou_A 13 YITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRY---------------------------RVNYAKEE 65 (108)
T ss_dssp HHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHH---------------------------HHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH---------------------------HHHHHHHH
Confidence 333334457889999888777666666666655676676665432 23334333
Q ss_pred HHHhCCCCCCHHHHHHHhCCC
Q 008652 413 YIQEGNHSPDKEDLARRVGIT 433 (558)
Q Consensus 413 l~~~~gr~Pt~eEIA~~lgis 433 (558)
|.. ..-++.|||..+|.+
T Consensus 66 L~~---~~~si~~IA~~~Gf~ 83 (108)
T 3oou_A 66 LLQ---TKDNLTIIAGKSGYT 83 (108)
T ss_dssp HHH---CCCCHHHHHHHTTCC
T ss_pred HHc---CCCCHHHHHHHcCCC
Confidence 332 134788899888873
No 406
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=38.80 E-value=75 Score=27.98 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHHhccCCCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 492 TLLNPKERCIVRLRFGIEDGKP---KSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 492 ~~L~~rEReVL~LRyGL~d~e~---~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
..++++++.|...--+--|..| .+++||++.+|++.+.|. +++++|+.
T Consensus 15 ~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 4689999988776554333344 589999999999999885 55666654
No 407
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=38.22 E-value=31 Score=29.13 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
++.|+.+||+.+|+|+.++.+..++
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999999988776543
No 408
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=38.16 E-value=28 Score=31.61 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008652 515 SLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 515 Tl~EIAe~LGISrerVRqie~R 536 (558)
|.+|+|+.+|||+.+|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 409
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=38.12 E-value=1.4e+02 Score=25.28 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 578999999999999999888764
No 410
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=38.07 E-value=80 Score=26.06 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=30.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHH
Q 008652 332 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 376 (558)
Q Consensus 332 sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~ 376 (558)
.+........++++||.+...+.--.--..|.-.-|..|..|...
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~ 58 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLE 58 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH
Confidence 344444455688999988877776666666766667777766544
No 411
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.98 E-value=52 Score=28.17 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+...+.+.+........++...+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 17 ~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l-------~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 17 YLIRSIGMKLKTSADARLAELGLNSQQGRMIGYI-------YENQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHH-------HHHTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HhCCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 3344444444444443332333444444433332 222223678999999999999888877653
No 412
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=37.65 E-value=36 Score=27.57 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHh
Q 008652 420 SPDKEDLARRVGITVE-KLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e-~v~~ll~~ 443 (558)
..+..+||+.||++.. .|+..|..
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 5679999999999999 89887754
No 413
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=37.49 E-value=21 Score=34.75 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 502 VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 502 L~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
=.|.+.-..+.++|+.|||+.+|+++.+|..++.
T Consensus 10 ~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~ 43 (260)
T 3r4k_A 10 TLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMS 43 (260)
T ss_dssp HHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344432234689999999999999999986554
No 414
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=37.49 E-value=41 Score=26.38 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.++..|||+.+|++...+...+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999999999999888764
No 415
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=37.20 E-value=10 Score=31.96 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=33.2
Q ss_pred HHHhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008652 489 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 537 (558)
Q Consensus 489 ~~L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 537 (558)
+....|++.|..||..-.- ..+.|..||++.++ ++..+|..++.+-
T Consensus 28 ~~~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rL 77 (99)
T 2k4b_A 28 EVEFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGRL 77 (99)
T ss_dssp ---CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHHH
Confidence 3345699999988887654 24799999999997 5788887655443
No 416
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=37.14 E-value=1.1e+02 Score=25.58 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 372 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 372 TYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.|..+.+.+.+.+.+.+..+...++...+..+..+ .. .+ ..+..+||+.+|++...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~-~~-~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 9 GRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSI-------RC-AA-CITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-------HH-HS-SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-------Hh-cC-CCCHHHHHHHHCCChHHHHHHHHH
Confidence 45666666667666666554445555444444433 11 22 468999999999999999888764
No 417
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=37.13 E-value=46 Score=26.74 Aligned_cols=24 Identities=0% Similarity=0.117 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..|||+.+|+|+..|+..+..
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999999999987753
No 418
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=37.00 E-value=39 Score=28.70 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh
Q 008652 421 PDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.+..+||+.+|++...+..++..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999888764
No 419
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=36.91 E-value=32 Score=30.03 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHH
Q 008652 512 KPKSLSEVGNIF-GLSKERVRQLES 535 (558)
Q Consensus 512 e~~Tl~EIAe~L-GISrerVRqie~ 535 (558)
.++++.||++.+ |||..+|.+++.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~ 71 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQ 71 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHH
Confidence 479999999999 799999986544
No 420
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=36.73 E-value=34 Score=25.46 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYR 540 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkK 540 (558)
.+++.+..+|...|.-+.. ......+||..+|+|...|.........+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4678888888888864321 12245689999999999999987665554
No 421
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.65 E-value=76 Score=26.44 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHH
Confidence 468999999999998888777653
No 422
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=36.41 E-value=17 Score=32.18 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
+|..|+|+.+|||..++|..+..++
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~Gl 25 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGL 25 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5789999999999999999987654
No 423
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=36.26 E-value=23 Score=27.29 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 566677777777753321 122456899999999999999988877776653
No 424
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=36.17 E-value=55 Score=25.94 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+..
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3667777777777753211 1223568999999999999999988888887653
No 425
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=35.79 E-value=50 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 410 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 442 (558)
Q Consensus 410 ~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 442 (558)
...+..+.|..|+..|||+.+|++...+...+.
T Consensus 14 I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 334455677899999999999999888877664
No 426
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=35.68 E-value=1.2e+02 Score=25.42 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+.+.+.+.+........++...+..+..+. ..+ ..+..+||+.+|++...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~--------~~~-~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRVC--------ENP-GIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHHH--------HST-TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HCc-CcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34444555555555554444445544444443321 122 468999999999999999888764
No 427
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=35.43 E-value=18 Score=32.14 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHh-ccCCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRF-GIEDGKPKSLSEVGN----IF--GLSKERVRQLESRA 537 (558)
Q Consensus 493 ~L~~rEReVL~LRy-GL~d~e~~Tl~EIAe----~L--GISrerVRqie~RA 537 (558)
.|+-.|+.-|..++ - ...++|..+||. .| ||++.+|+.+++.-
T Consensus 11 ~lT~~qK~~i~~~~~~--~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQ--LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHS--SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46767777666666 2 125789999999 99 99999999998763
No 428
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=35.27 E-value=30 Score=26.91 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=19.0
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 008652 515 SLSEVGNIFGLSKERVRQLE 534 (558)
Q Consensus 515 Tl~EIAe~LGISrerVRqie 534 (558)
++.+.|+.||||..+|++.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999886
No 429
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=35.26 E-value=51 Score=24.00 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRL 541 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKL 541 (558)
.+++.+..+|...|-.+.. ......+||..+|++...|......-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 3567788888888753321 123456899999999999998877655543
No 430
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=35.18 E-value=57 Score=24.98 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 567777778777764321 1224578999999999999999988888877654
No 431
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=35.11 E-value=49 Score=27.70 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
.+.|+.|+|+.+|||.+.|......-
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 47899999999999999999887654
No 432
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=34.95 E-value=3.5 Score=37.38 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+..-.+.|+. .+. .|..+|..|||+.+|+|+.+|| +++++|..
T Consensus 11 ~d~l~~~Il~-~l~--~~~~ls~~eLa~~lgvSr~~vr----~al~~L~~ 53 (163)
T 2gqq_A 11 LDRIDRNILN-ELQ--KDGRISNVELSKRVGLSPTPCL----ERVRRLER 53 (163)
T ss_dssp CCSHHHHHHH-HHH--HCSSCCTTGGGTSSSCCTTTSS----STHHHHHH
T ss_pred hhHHHHHHHH-HHH--hCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 5555666776 332 2367899999999999999997 46666654
No 433
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=34.92 E-value=19 Score=35.55 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+.++|+.|||+.+|+++.+|..++.
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~ 67 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLA 67 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3679999999999999999986543
No 434
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=34.86 E-value=87 Score=27.26 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 371 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 371 STYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..|..+.+...+.+.+.....-..++...+..+.-+ ...| ..+..+||+.+|++...+..++..
T Consensus 20 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l--------~~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 20 LSYMIARVDRIISKYLTEHLSALEISLPQFTALSVL--------AAKP-NLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH--------HHCT-TCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345566666666666655443344554444444332 1223 578999999999999888887653
No 435
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=34.82 E-value=1.1e+02 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 419 HSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 419 r~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..-+.+|||+.+|+|...|...+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4679999999999999999887653
No 436
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=34.73 E-value=31 Score=29.56 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRA 537 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RA 537 (558)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999998877665
No 437
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=34.71 E-value=69 Score=25.95 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=24.3
Q ss_pred HHHhCCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 008652 413 YIQEGNH-SPDKEDLARRVGITVEKLERLIF 442 (558)
Q Consensus 413 l~~~~gr-~Pt~eEIA~~lgis~e~v~~ll~ 442 (558)
+.+.... .++.++||+.+|+++..+..+..
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444444 78999999999999999988866
No 438
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=34.45 E-value=40 Score=28.29 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 008652 514 KSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 514 ~Tl~EIAe~LGISrerVRqie~ 535 (558)
-...+.|+.||||+.+++..++
T Consensus 72 gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 72 GNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4788999999999999976443
No 439
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=34.09 E-value=76 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhHHHHH
Q 008652 330 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 376 (558)
Q Consensus 330 V~sIArrY~~~g~~~eDLIQEG~IGLirAiekFDp~kG~rFSTYA~~ 376 (558)
|..+........+.++||.+...+.--.--..|.-. |..|..|...
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~ 57 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTE 57 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHH
Confidence 333344444456888999888776666555666655 7777766544
No 440
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.95 E-value=45 Score=26.40 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 546 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 546 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 566677777777753321 12235789999999999999999888888877543
No 441
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=33.88 E-value=1.4e+02 Score=24.96 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHH
Confidence 578999999999999999888764
No 442
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.86 E-value=63 Score=24.96 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHhcc-CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 493 LLNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL-~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
.+++.+..+|...|.- +.. ......+||..+|++...|......-..|.|+..
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3677788888888852 211 1223678999999999999999888887777754
No 443
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.82 E-value=20 Score=32.21 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
..+|..|+|+.+|||..++|..+..++
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~GL 29 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKINL 29 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHCCC
Confidence 357999999999999999999987654
No 444
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.75 E-value=30 Score=27.53 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 455556666666653211 122457899999999999999988877776653
No 445
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.73 E-value=53 Score=27.60 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 491 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 491 L~~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
+..|++.|+.|+.+-.-- +.+|.+.++|...+|++..+|. +++++|-
T Consensus 32 ~~~Lt~~E~lVy~~I~~a-Gn~GIw~kdL~~~tnL~~~~vt----kiLK~LE 78 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEIN----KILKNLE 78 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH-TTSCEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHH----HHHHHHH
Confidence 357888888888776542 3489999999999999988876 5555553
No 446
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=33.68 E-value=32 Score=30.44 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHhccCCCCCCCHHHHHHHhCC-CHHHHHHHHHHH
Q 008652 501 IVRLRFGIEDGKPKSLSEVGNIFGL-SKERVRQLESRA 537 (558)
Q Consensus 501 VL~LRyGL~d~e~~Tl~EIAe~LGI-SrerVRqie~RA 537 (558)
-|..+.. .|+|+.+|+...|| |+.||...+.+-
T Consensus 20 ~I~~~i~----~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 20 DICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp HHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HHHHHHH----CCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3444555 78999999999999 899999987763
No 447
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=33.66 E-value=24 Score=27.90 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+.
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 344444455555532211 122346899999999999999998888887764
No 448
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=33.60 E-value=1.1e+02 Score=26.52 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 371 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 371 STYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..|....+.+.+.+.+........++...+..+.-+. ..+ ..+..+||+.+|++...+..++..
T Consensus 24 l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~--------~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 24 IGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLY--------RED-GINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHH--------HSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3455556666666666655444455554444444331 122 468999999999999999888753
No 449
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=33.39 E-value=1.3e+02 Score=25.49 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 568999999999999999888764
No 450
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=33.35 E-value=40 Score=35.22 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008652 483 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535 (558)
Q Consensus 483 ~~e~L~~~L~--~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~ 535 (558)
+...+...+. .|+..|-.||..-+. ..+.++|..|||+.++++..+|..++.
T Consensus 389 ~~~~~~~~~~~~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~ 442 (487)
T 1hsj_A 389 VKKFFRDTKKKFNLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQ 442 (487)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 3444555554 599999988877664 112579999999999999999975444
No 451
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.31 E-value=55 Score=33.55 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 499 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 499 ReVL~LRyGL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
+.||.+-+- ..+.|..|||+.+|+|+.+|.++..+-+.
T Consensus 19 ~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555442 25799999999999999999988765544
No 452
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.30 E-value=40 Score=26.48 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 566666677666653321 234567899999999999999988887776653
No 453
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.77 E-value=24 Score=27.30 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 566667777777753221 122457899999999999999988777766543
No 454
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=32.46 E-value=35 Score=27.88 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=18.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh
Q 008652 421 PDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 421 Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
-|..++|+.+|++...|..+...
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 57788888888888888887764
No 455
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.16 E-value=1.1e+02 Score=26.37 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 373 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 373 YA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
|..+.+.+.+.+.+........++...+..+.-+ ...+ ..+..+||+.+|++...+..++..
T Consensus 28 ~~l~~~~~~~~~~~~~~l~~~~lt~~~~~iL~~l--------~~~~-~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 28 YLMNRIMGRYNANLRKEMTALGLSTAKMRALAIL--------SAKD-GLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHHH--------HHSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCChhHHHHHHHH
Confidence 4455555555555554433333444333333322 1223 568999999999999999888764
No 456
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.11 E-value=1.8e+02 Score=24.00 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 372 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 372 TYA~~wIr~aI~~aIr~~sr~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.|..+.+...+.+.+.....- .++...+..+.-+. . .+ ..+..+||+.+|++...+..++..
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l~-------~-~~-~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 14 GFILRQANQRYAALFANGIGN-GLTPTQWAALVRLG-------E-TG-PCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHH-------H-HS-SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH-------H-cC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344455555566666554443 55544444443321 1 22 578999999999999999888764
No 457
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.98 E-value=38 Score=26.34 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 548 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 548 (558)
+++.+..+|...|-.+.. ......+||..+|++...|+.....-..|.|+.-...
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 456666667666643211 2234678999999999999999988888877654443
No 458
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.85 E-value=1.1e+02 Score=23.66 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhcc-CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 494 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 494 L~~rEReVL~LRyGL-~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
+++.+..+|...|.. +.. ......+||..+|++...|......-..|.|+.-
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567777888877752 321 1224678999999999999999888777777654
No 459
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=31.76 E-value=31 Score=34.65 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.++|.+|+|+.+|||...|.+++..
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~G 48 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIENG 48 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999874
No 460
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=31.62 E-value=66 Score=25.24 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 455555666666643211 1223578999999999999999888777777654
No 461
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=31.54 E-value=44 Score=33.09 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHhC-------CCHHHHHHHHHHH
Q 008652 498 ERCIVRLRFGIEDGKPKSLSEVGNIFG-------LSKERVRQLESRA 537 (558)
Q Consensus 498 EReVL~LRyGL~d~e~~Tl~EIAe~LG-------ISrerVRqie~RA 537 (558)
.|.+|.+.|- .|+|..+|++.|+ +|+.+|+.+.++-
T Consensus 11 ~R~~i~~~~~----~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFH----LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 3455666665 7899999999977 9999999988764
No 462
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.21 E-value=2.1e+02 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHH
Confidence 578999999999999999888764
No 463
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=31.16 E-value=84 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
++.|+.+||..+|+|....++..++
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999998877765443
No 464
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=31.14 E-value=44 Score=28.07 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.4
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHH
Q 008652 512 KPKS--LSEVGNIF-GLSKERVRQLES 535 (558)
Q Consensus 512 e~~T--l~EIAe~L-GISrerVRqie~ 535 (558)
.+++ +.||++.+ |||..++.+.++
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 3556 99999999 999999876543
No 465
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=31.11 E-value=81 Score=26.66 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-C----CCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-G----LSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-G----ISrerVRqie~RALkKLR 542 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ | .+..+|...+.+-++||.
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 89 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIE 89 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Confidence 58999999988765 4566889999998865 3 566778877776666664
No 466
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=31.04 E-value=1e+02 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=24.3
Q ss_pred HHHHHHhhhhCCCCchHHHHHHccCCHHHHHHH
Q 008652 279 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 311 (558)
Q Consensus 279 ~~~~~l~~~~g~~pt~~ewA~a~g~~~~~L~~~ 311 (558)
++..-++..+..+++..++|+.+|++...|.+.
T Consensus 7 ~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~ 39 (292)
T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM 39 (292)
T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 334445566677889999999999988777655
No 467
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=30.69 E-value=27 Score=33.13 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 510 DGKPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 510 d~e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
...+.|+.++|+.||+|+.+|.+.+++
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 346789999999999999999866544
No 468
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=30.40 E-value=64 Score=25.67 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.+++.+..+|...|.-+.. ......+||..+|++...|......-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4677777788777753321 122457899999999999999998888777754
No 469
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=30.38 E-value=35 Score=30.99 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
++..|.++||+.+|||+..|++++ .+|++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil----~~L~~ 54 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNIL----SVLHK 54 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHH----HHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH----HHHHH
Confidence 467899999999999998887554 45655
No 470
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=30.24 E-value=44 Score=27.33 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 511 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 511 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
|++++-.|||+.+||.+.-|. +|+++|++.
T Consensus 32 G~PlkageIae~~GvdKKeVd----Kaik~LKkE 61 (80)
T 2lnb_A 32 GSPVKLAQLVKECQAPKRELN----QVLYRMKKE 61 (80)
T ss_dssp TSCEEHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHH----HHHHHHHHc
Confidence 489999999999999977775 677777763
No 471
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.12 E-value=63 Score=26.31 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
..++.+..+|...|.-+.. ......+||..+|++...|......-+.|.|..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3566777777777753321 223467899999999999999998877777653
No 472
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=29.93 E-value=51 Score=27.23 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..|||+.+|+|+..|+..+..
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 578899999999999999988764
No 473
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=29.91 E-value=1.2e+02 Score=25.17 Aligned_cols=53 Identities=17% Similarity=0.018 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHhccCCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 493 LLNPKERCIVRLRFGIEDG----KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~----e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
.||+....||.-.|.-.-. ....-.+||..+|+|...|......++.|.+...
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4777888888777642100 1223467999999999999999999999988764
No 474
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.78 E-value=21 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 513 PKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 513 ~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
.+|..|+|+.+|||..++|..+..++-
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gll 42 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGLF 42 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTCC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 478999999999999999999887653
No 475
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=29.73 E-value=73 Score=25.66 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 4778888888888863321 12245789999999999999998887777764
No 476
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=29.61 E-value=25 Score=31.81 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALY 539 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALk 539 (558)
..+|..|+|+.+|||..++|..+..++-
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~Gll 37 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESKGLI 37 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHTTSS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcCCC
Confidence 4589999999999999999999887653
No 477
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=29.59 E-value=1.5e+02 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 468999999999999999888764
No 478
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=29.40 E-value=69 Score=29.18 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=28.4
Q ss_pred HHhcCCHHHHH-HHHHHhccCCCCCCCHHHHHHHhC-CCHHHHHHHHH
Q 008652 490 LLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIFG-LSKERVRQLES 535 (558)
Q Consensus 490 ~L~~L~~rERe-VL~LRyGL~d~e~~Tl~EIAe~LG-ISrerVRqie~ 535 (558)
.+.-|....|. ||.+-.+ ......|..||++.++ ||+.+|++.+.
T Consensus 22 ~~~~l~~~tR~~IL~~Ll~-~p~~~~ta~eL~~~l~~lS~aTVyrhL~ 68 (151)
T 3u1d_A 22 RRRFVLHETRLDVLHQILA-QPDGVLSVEELLYRNPDETEANLRYHVD 68 (151)
T ss_dssp HHHHHCCHHHHHHHHHHHH-STTSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHc-CCCCCCCHHHHHHhcCCCCHHHHHHHHH
Confidence 33334444444 4444443 1123479999999999 99999986543
No 479
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.15 E-value=92 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESR 536 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~R 536 (558)
.+.+..|+++.+|++...++.++..
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5679999999999999999876443
No 480
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.99 E-value=1.9e+02 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHH
Confidence 578999999999999888887653
No 481
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=28.87 E-value=2.4e+02 Score=23.66 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 378999999999999999888754
No 482
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=28.53 E-value=3.4e+02 Score=24.77 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 545 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 545 (558)
.+.|.+||++..|++..+|+...+.-...|...+
T Consensus 158 ~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~ 191 (207)
T 1c9b_A 158 EKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF 191 (207)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHS
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhC
Confidence 6889999999999999999988776666555443
No 483
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.49 E-value=1e+02 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 578999999999999999888764
No 484
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=28.33 E-value=50 Score=28.33 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQL 533 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqi 533 (558)
.+.|..+||+..|||+.++...
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 23 HEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHH
T ss_pred ccCcHHHHHHHhCCCchhHHHH
Confidence 5789999999999999999875
No 485
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=28.23 E-value=4.8 Score=35.19 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=23.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 511 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 511 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
|+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVM----RSYEYLQS 61 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGH----HHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4556 89999999999999998 67777754
No 486
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.02 E-value=59 Score=25.13 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+.
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 456666677666643221 223457899999999999999998888877653
No 487
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=27.69 E-value=53 Score=28.58 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHhccCCCCCCCHHHHHHHhCCCHHHHHHH
Q 008652 502 VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 533 (558)
Q Consensus 502 L~LRyGL~d~e~~Tl~EIAe~LGISrerVRqi 533 (558)
+....|+ .+.|.++||+..|||+.++...
T Consensus 14 l~~~~G~---~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 14 LFIKNGY---NATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHHHTT---TTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHcCC---ccCCHHHHHHHhCCCchhHHHh
No 488
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=27.48 E-value=53 Score=28.82 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQL 533 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqi 533 (558)
.+.|.++||+..|||+.++...
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHH
Confidence 6899999999999999999864
No 489
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=27.46 E-value=70 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHhcc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 542 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR 542 (558)
.+++.+..+|...|.- +.. ......+||..+|++...|.......+.|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4778888888887764 111 1123467899999999999999888777654
No 490
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=27.41 E-value=1.1e+02 Score=24.53 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhCCCHHH----HHHHHHhcCCCcccCCCC--CCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhc
Q 008652 420 SPDKEDLARRVGITVEK----LERLIFITRMPLSMQQPV--WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 493 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~----v~~ll~~~~~~~SLD~~i--~~d~~~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~ 493 (558)
.-|..++|+.+|++... |..+......+ +++.-. ..--+.++..++... . ....+...+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~~~p-~~~~l~~la~~l~v~~~~l~~~~------~------~~~~~~~~~~~ 80 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGKHAP-DFEMANRLAKVLKIPVSYLYTPE------D------DLAQIILTWNE 80 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHTSCGGGGGCCC------H------HHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCCCCC-CHHHHHHHHHHHCcCHHHHhCCC------h------hHHHHHHHHHh
Confidence 35789999999999998 88876643322 222100 000011122222211 1 11345567899
Q ss_pred CCHHHHHHH
Q 008652 494 LNPKERCIV 502 (558)
Q Consensus 494 L~~rEReVL 502 (558)
|++.+++.|
T Consensus 81 l~~~~~~~~ 89 (98)
T 3lfp_A 81 LNEQERKRI 89 (98)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999988
No 491
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.17 E-value=1.2e+02 Score=25.96 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 578999999999999999888754
No 492
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.09 E-value=62 Score=25.34 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 544 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 544 (558)
.++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 566666777777753321 122457899999999999999987777777653
No 493
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=26.97 E-value=19 Score=29.97 Aligned_cols=50 Identities=4% Similarity=-0.056 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHhccCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008652 493 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 493 ~L~~rEReVL~LRyGL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 543 (558)
.|+++|..+|.+-. ...|+..|.++|.+.+ .++..+|+..+.+.++||..
T Consensus 29 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 29 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp ECCCSTHHHHHHHH-HHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 47888888877654 2445788999999988 45677888777777777653
No 494
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.83 E-value=1.2e+02 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 418 NHSPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 418 gr~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
...-+..|||+.+|++...|...+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34678999999999999999887653
No 495
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=26.83 E-value=1.7e+02 Score=22.25 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
.-|..++|+.+|++...|..+...
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHcC
Confidence 357899999999999999988653
No 496
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=26.75 E-value=2.9e+02 Score=23.43 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=57.3
Q ss_pred hhhC-CCCchHHHHHHccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhh
Q 008652 286 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 361 (558)
Q Consensus 286 ~~~g-~~pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArrY~~~g~~~eDLIQEG~IGLirAiek 361 (558)
...| ...|..+.|+.+|++...+-....+-+.-+..++......+..........+.+..+.+...+..++..+..
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAMA 99 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhc
Confidence 3456 567999999999999999988888777888888888777777776666666667777777766666654433
No 497
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=26.74 E-value=1e+02 Score=26.45 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008652 420 SPDKEDLARRVGITVEKLERLIFI 443 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~ 443 (558)
..+..+||+.+|++...+..++..
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 468999999999999999888764
No 498
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=26.68 E-value=85 Score=27.10 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008652 512 KPKSLSEVGNIFGLSKERVRQLESRAL 538 (558)
Q Consensus 512 e~~Tl~EIAe~LGISrerVRqie~RAL 538 (558)
+|+|+.|||..-|++..+|-..+.+..
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 899999999999999999987766553
No 499
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.59 E-value=33 Score=26.49 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008652 494 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 543 (558)
Q Consensus 494 L~~rEReVL~LRyGL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 543 (558)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|+
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 566777788777753211 12245789999999999999988777666554
No 500
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=26.48 E-value=1.4e+02 Score=24.96 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCC--CCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHH
Q 008652 420 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQP--VWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 497 (558)
Q Consensus 420 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~--i~~d~~~~l~e~i~d~~~~~pe~~le~~~~~e~L~~~L~~L~~r 497 (558)
.-|..++|+.+|++...|..+...... .+++.- +..--+.++.+++......... .....+...+..|++.
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~-p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~------~~~~~l~~~~~~l~~~ 97 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQH-PSLQVLYDLVSLLNVSVDEFFLPASSQVKS------TKRRQLENKIDNFTDA 97 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCC-CCHHHHHHHHHHHTCCSHHHHSCCCCCCCC------HHHHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCCccccch------HHHHHHHHHHHcCCHH
Confidence 357889999999999999888764432 222210 0000011222232222111111 1223466677889988
Q ss_pred HHHHHHHH
Q 008652 498 ERCIVRLR 505 (558)
Q Consensus 498 EReVL~LR 505 (558)
++.++.-.
T Consensus 98 ~~~~i~~~ 105 (126)
T 3ivp_A 98 DLVIMESV 105 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
Done!