BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008653
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus
GN=Cog2 PE=2 SV=2
Length = 731
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/556 (26%), Positives = 269/556 (48%), Gaps = 42/556 (7%)
Query: 17 RFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNT 76
+F + + +P ++ + RI + +L SL + GL+ + +++ +CLR YA ID T
Sbjct: 181 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKT 240
Query: 77 RNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDI--- 133
++AE + +V P + ++I E + L+ Y ++ + V C+ L ++
Sbjct: 241 QDAEALVGQVLVKPYVNEVI----VEQFVESHPSSLQLMYNKLLEFVPHHCRLLREVTGG 296
Query: 134 --SSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG 191
SS + + + +DFL NS+ E++ +++ P F+PG P F + Y S+DF+ E
Sbjct: 297 AVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFER 356
Query: 192 YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQ 251
C S+++V + RA Y F +WN+ VYF +RF+E+AG+L++ALT ++
Sbjct: 357 QCGSQASVKRLRAHPAYHNFSNKWNLPVYFQIRFREVAGSLEAALTDGL------EDAPA 410
Query: 252 GNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSG 311
G+ L + S+ CW ++FL + + RL+LQ+L+R+S ++S S
Sbjct: 411 GSPYCLLASHRTWI--SLGKCWSDEMFLPLLAHRLWRLTLQILARFSVFVSELSVRPVSN 468
Query: 312 HASFNPGNEWAISAAPDD------------------FIYIIHDINCLATEVSGDYLTHVL 353
++ S P + +Y++ D+ L E D L V
Sbjct: 469 ESAKETKKPLTGSKDPSEDQGSHASEASAASISSTQLVYVVSDLGRL-QEWLPDLLETVK 527
Query: 354 QLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRM 413
Q L + + ++ + +LS+ +P + + IV L E L+ + YR
Sbjct: 528 QKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRR 587
Query: 414 TNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAEL 473
TNK +P S YV L+PL L G + P L +A + T RY E +++
Sbjct: 588 TNKEVPSTASSYVDSALKPLYQLQSGHG--DKVQPAVMQSWLQEALSDSTHRYFETVSDV 645
Query: 474 ISVARKTESSLLKIRQGAQRRAGASSDVSDH--NVSDTDKICMQLFLDIQEYGRSLAALG 531
++ +K E SL +++Q RR+ A++ VS +SD DKI +QL LD++ G + +G
Sbjct: 646 LNSVKKMEESLKRLKQA--RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMG 703
Query: 532 VQAADIPPYRSLWQCV 547
+Q +DI + +L + V
Sbjct: 704 LQTSDIKSFPALMELV 719
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens
GN=COG2 PE=1 SV=1
Length = 738
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/571 (26%), Positives = 278/571 (48%), Gaps = 51/571 (8%)
Query: 17 RFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNT 76
+F + + +P ++ + RI + +L SL + GL+ + ++I +CLR YA ID T
Sbjct: 181 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT 240
Query: 77 RNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLD---- 132
R+AE + +V P + ++I E + + L+ Y ++ + V C+ L +
Sbjct: 241 RDAEALVGQVLVKPYIDEVI----IEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGG 296
Query: 133 -ISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG 191
ISS + + + +DFL NS+ +++ +++ P F+PG P F Y S+DF+ LE
Sbjct: 297 AISSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLER 356
Query: 192 YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAA-SLAPVQNSNSN 250
C S+++V + RA Y F K+WN+ VYF +RF+EIAG+L++ALT AP ++
Sbjct: 357 QCGSQASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAES---- 412
Query: 251 QGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAAR-- 308
L S S++ CW ++FL + RL+LQ+L+RYS +++ L+ R
Sbjct: 413 -----PYCLLASHRTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNE-LSLRPI 466
Query: 309 --------------SSGHASFNPGNEWAISAAPDD-----------FIYIIHDINCLATE 343
S S GN + P + +Y++ D++ L +
Sbjct: 467 SNESPKEIKKPLVTGSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQ 526
Query: 344 VSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQ 403
+ + L + L + + ++ + S S+ +P + + I+ L + L+
Sbjct: 527 LP-ELLEIIKPKLEMIGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKS 585
Query: 404 LKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQIT 463
+ YR TNK +P S YV L+PL L G + L + L ++ T
Sbjct: 586 ALEVPRLYRRTNKEVPTTASSYVDSALKPLFQLQSGHK--DKLKQAIIQQWLEGTLSEST 643
Query: 464 SRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEY 523
+Y+E +++++ +K E SL +++Q A++ A+ +SD DKI +QL LD++
Sbjct: 644 HKYYETVSDVLNSVKKMEESLKRLKQ-ARKTTPANPVGPSGGMSDDDKIRLQLALDVEYL 702
Query: 524 GRSLAALGVQAADIPPYRSLWQCVAPSDRQS 554
G + LG+QA+DI + +L + VA + Q+
Sbjct: 703 GEQIQKLGLQASDIKSFSALAELVAAAKDQA 733
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium
discoideum GN=cog2 PE=3 SV=1
Length = 904
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/458 (26%), Positives = 215/458 (46%), Gaps = 59/458 (12%)
Query: 146 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLE-GYCPSRSAVAKFRA 204
F++ S+L E+ ++ K F+ G P F +NY + +F+ +E + ++ + +FR
Sbjct: 442 FISQSVLPEIDESLGFFK-QIFATGIPDLFYKNYYLTFNFIQSIEVNFLTNKELLTQFRQ 500
Query: 205 EAIYVEFMKQWNVGVYFSLRFQEIAGALD---------SALTAASLAPVQNSNSNQGNSQ 255
+ Y K+WN VYF L F IA + LT + N+N+N N+
Sbjct: 501 SSSYSSLWKKWNFAVYFQLCFTNIAQHFEFNYLRIPLFDQLTLPTNNITNNNNNNNENNN 560
Query: 256 ALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGL---------- 305
LK + L SM CW F+ S KF +L LQL++RY ++S L
Sbjct: 561 EFYLKSTDGLRLSMDKCWSNSNFIFDLSSKFFKLFLQLIARYDTFISDTLIPLELELQQQ 620
Query: 306 -------AARSSGHASFNPG---------------NEWAISAA---------PDDFIYII 334
+ N G N+ IS++ P++FIYII
Sbjct: 621 LQQQQLQQQQQQQQQQQNIGDSVIKITPKSPPSLSNQSPISSSTTLNNKQSSPENFIYII 680
Query: 335 HDINCLATEVSGDYLTHVLQLLSSCSS--EVLDLVKQSILEGGKSLSSMLPVVINTIVDA 392
DI + +++S +Y +++ + + + E+L+L+ ILE K+L ++P + I +
Sbjct: 681 SDIYKIKSKISTNYKELIIKTIGNHQNQHEILNLINDGILESCKTLEQLIPRISIIIENH 740
Query: 393 LVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE-RAMTYLTPEAK 451
L+ K +E + + + +TYRMTNKP+P + S YVS ++ PL+ L+ + ++ ++ PE K
Sbjct: 741 LISKCLEPIEIISTLRSTYRMTNKPVPTKPSIYVSNLISPLEILINNKASSLHFIPPEIK 800
Query: 452 NELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK 511
+ T +T + A LI ++ + K+ +++ ++ S ++SD DK
Sbjct: 801 LNWAISVLTPVTESFKNAATNLIQSVTQSNDIINKMV----KKSKPTTTTSGGDMSDMDK 856
Query: 512 ICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAP 549
I +QL+LD+ ++G + G+ P+ L V P
Sbjct: 857 ISLQLYLDVDKFGLYIQKFGINLLTFEPFLGLKSIVEP 894
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila
melanogaster GN=ldlCp PE=2 SV=1
Length = 710
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 226/500 (45%), Gaps = 43/500 (8%)
Query: 66 CLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEK 125
CLR Y ++ AE F VVAP M +I G + G L Y +I +
Sbjct: 231 CLRIYITLNACDQAECAFREDVVAPYMTGVI--GEQQLQNSPQG--LAGIYSKILNFISL 286
Query: 126 DCKFLLDIS--SAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSL 183
LL ++ S + G F+F+ NS +V + ++ F+PG F YK +
Sbjct: 287 HMTDLLRLTLYSDKFPG---FNFVVNSYWSDVETRLELHMNSIFAPGNSEVFYVKYKCTR 343
Query: 184 DFLAYLEGY--CPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASL 241
DFL +E C AV +R F +WN+ VYF + FQEIAG + A L
Sbjct: 344 DFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQICFQEIAGKFE-----AQL 398
Query: 242 APVQNSNSNQGNSQALTLKQSV--TLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSN 299
PV +S + N K S ++M CW + V+L KF +L++Q++ R S
Sbjct: 399 EPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPEVFPKFYKLNVQVVLRLSR 458
Query: 300 WLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIH-DINCLATEVSGDYLTHVLQLL-- 356
W++ + + G+ ++ + + +H DI L +L + QL+
Sbjct: 459 WITDAITQ--------SKGSNFSKPYTRNQLLIALHADIRKLDA-----HLPELQQLIIK 505
Query: 357 ----SSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALV-EKAVEDLRQLKGITATY 411
C+ D++ +S+ +L + L + T+V+ L+ E E++RQ+ + Y
Sbjct: 506 SVPVEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIGECETENVRQVNDLPRLY 565
Query: 412 RMTNKPLPVRHSPYVSGVLRPLKTLLE-GERAMTYLTPEAKNELLLDAATQITSRYHELA 470
R TN+ +P R S YV +LRPLK + E + L E ++L + A+ IT Y +
Sbjct: 566 RKTNREVPTRCSSYVEQMLRPLKAFAQQNESQLGTLVVE---QILAEVASHITKAYFNVV 622
Query: 471 AELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 530
+++++ +KTE SL ++R A S S +SD DKI +QL +D+ + + L L
Sbjct: 623 SDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIRVQLRVDVTSWRQELCKL 682
Query: 531 GVQAADIPPYRSLWQCVAPS 550
QA I L V S
Sbjct: 683 NFQATQIDKLVELTNMVEDS 702
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis
elegans GN=cogc-2 PE=2 SV=1
Length = 681
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 152/393 (38%), Gaps = 35/393 (8%)
Query: 146 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAE 205
FL ++L +L+ I K P F + + +F+ R+ + R
Sbjct: 292 FLDETLLTFILTFIDKCMGAVAVPSDTRLFHECFLLTQEFIDNWPSSHTCRAMLKSIR-- 349
Query: 206 AIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTL 265
++N+ VYF L D ++ A + S N+ N+ L S +
Sbjct: 350 -------DKFNLLVYFKLETHRFGKQCDQLMSPEMFAEPETS-ENRENTPQLHCGVSRAI 401
Query: 266 LDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISA 325
+ +++ W DV+L P DK +L+LL ++ +W +++ + +W
Sbjct: 402 ITAIEHVWSDDVYLPPIVDKLWDFTLKLLLKHFSW------SQTMKNYFMEEKRDWT--- 452
Query: 326 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVV 385
+ + D L V L + + + Q + + G+S+ S+ +
Sbjct: 453 ---SMVTLRSDTGNLHQLVFDFALESIWGKFHDITVDTAPF-GQCLTKHGRSIDSLCVQI 508
Query: 386 INTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTY 445
++I++ E +++ Q+ + YR T K P HS YV + ++ L E +
Sbjct: 509 DDSIIEMFSEVLHQEIAQVSDVPKQYRWTKKSPPTTHSKYVVTAIEMVENLKEKLCCEEH 568
Query: 446 -LTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDH 504
T E ++ L A + E++ T SSL + ++ +G++
Sbjct: 569 PHTDEIVRKVNLSAFNYFVGK----GNEVLDSVEATGSSLSRFKRKTTTDSGST------ 618
Query: 505 NVSDTDKICMQLFLDIQEYGRSLAALGVQAADI 537
V+D DKI Q++ D + + L AD+
Sbjct: 619 -VTDDDKIKQQIYHDAKYFLSYAENLVFSQADL 650
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 107 ASGDELESDYEQIKQCVEKDCKFLLDISSA-----ENSGLHVFDFLANSILKEVLSAIQK 161
+ +E + D E K+ +EK+ KFL D+ +A + + + +F LA L E + +
Sbjct: 25 SEKEEFQLDREYQKEILEKERKFLEDLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNS 84
Query: 162 GKPGAFSPGRPTQFLRNYK 180
GK R +F R K
Sbjct: 85 GKEAVVFKARKGKFYRAVK 103
>sp|Q11HU6|PYRG_MESSB CTP synthase OS=Mesorhizobium sp. (strain BNC1) GN=pyrG PE=3 SV=2
Length = 542
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 338 NCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKA 397
N + E GDYL +Q++ V D +KQ +LEG + +L + T+ D
Sbjct: 97 NIIEKERRGDYLGATVQVIP----HVTDEIKQFVLEGNEEFDFVLCEIGGTVGDIEAMPF 152
Query: 398 VEDLRQL 404
+E +RQL
Sbjct: 153 LEAIRQL 159
>sp|A4IJP9|ROCA_GEOTN 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1
Length = 515
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 431 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 479
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q5L3K8|ROCA_GEOKA 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus kaustophilus
(strain HTA426) GN=rocA PE=3 SV=1
Length = 515
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 431 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 479
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|B0BS41|PYRG_ACTPJ CTP synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=pyrG PE=3 SV=1
Length = 545
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 339 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 398
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +
Sbjct: 99 VLRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFL 154
Query: 399 EDLRQL 404
E LRQL
Sbjct: 155 EALRQL 160
>sp|B3GZX8|PYRG_ACTP7 CTP synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=pyrG PE=3 SV=1
Length = 545
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 339 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 398
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +
Sbjct: 99 VLRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFL 154
Query: 399 EDLRQL 404
E LRQL
Sbjct: 155 EALRQL 160
>sp|A3MYK8|PYRG_ACTP2 CTP synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=pyrG PE=3 SV=1
Length = 545
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 339 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 398
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +
Sbjct: 99 VLRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFL 154
Query: 399 EDLRQL 404
E LRQL
Sbjct: 155 EALRQL 160
>sp|Q601T8|DNLJ_MYCH2 DNA ligase OS=Mycoplasma hyopneumoniae (strain 232) GN=ligA PE=3
SV=1
Length = 692
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 19 SILP----VQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAID 74
+ILP ++NL N E IK A ++ +G VH N +++ NC + + +
Sbjct: 367 AILPNYSYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELV 424
Query: 75 NTRNAEEIFCNTVVAP--LMQKIIPHGPSEAL 104
N+ + + FC P ++QKI+ AL
Sbjct: 425 NSESGLDQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q4AA72|DNLJ_MYCHJ DNA ligase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
NCTC 10110) GN=ligA PE=3 SV=2
Length = 692
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 19 SILP----VQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAID 74
+ILP ++NL N E IK A ++ +G VH N +++ NC + + +
Sbjct: 367 AILPNYSYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELV 424
Query: 75 NTRNAEEIFCNTVVAP--LMQKIIPHGPSEAL 104
N+ + + FC P ++QKI+ AL
Sbjct: 425 NSESGLDQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q4A899|DNLJ_MYCH7 DNA ligase OS=Mycoplasma hyopneumoniae (strain 7448) GN=ligA PE=3
SV=2
Length = 692
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 19 SILP----VQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAID 74
+ILP ++NL N E IK A ++ +G VH N +++ NC + + +
Sbjct: 367 AILPNYSYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELV 424
Query: 75 NTRNAEEIFCNTVVAP--LMQKIIPHGPSEAL 104
N+ + + FC P ++QKI+ AL
Sbjct: 425 NSESGLDQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2
SV=1
Length = 373
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 41/220 (18%)
Query: 12 IMFSSRFSILPVQNLPFIENMEKRI---KSASLLLDASLGHCFVHGLEHQNANVIYNCLR 68
I+ S+ ++ V+ LP + + K I K LLL V +E+ N +
Sbjct: 170 ILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLSEK-----VSDIENLRPNQFQKDM- 223
Query: 69 AYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESD------------- 115
+ T E+ + VV KI S A A A GD++ SD
Sbjct: 224 ----VVRTEKGTEVVVDMVVLCTGIKI----NSSAYAAAFGDKMASDGALKVNKHLQLEG 275
Query: 116 YEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQF 175
YE I DC L + A ++GLH AN ++ +++++ + + PG T
Sbjct: 276 YENIYAI--GDCADLKEPKMAYHAGLH-----ANVVVTNIINSLTQKPLKTYEPGSLTFL 328
Query: 176 LRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQW 215
L ++ D + + GY R V ++ ++V K W
Sbjct: 329 LSMGRN--DGVGQVNGYYVGRLLVTIAKSRDLFVS--KSW 364
>sp|Q5WEQ4|SYV_BACSK Valine--tRNA ligase OS=Bacillus clausii (strain KSM-K16) GN=valS
PE=3 SV=1
Length = 880
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 338 NCLATEVSGDYLTHVL----QLLSSCSSEVLDLVKQSILEGGKSLS-SMLPVVINTIVDA 392
N A + + L HVL ++L + + + Q + G+S++ + PV ++V
Sbjct: 662 NEQAKQATRSVLAHVLDQTMRMLHPFMPFITEEIWQHLPHEGESITVANWPVYDQSLV-- 719
Query: 393 LVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEG--ERAMTYLTPEA 450
E+AVED+ LK + R T L V S + +RP + +R + Y+ A
Sbjct: 720 -FEEAVEDMEALKSLIHAIRTTRSELNVPMSKQIELKIRPQDEQMAARLQRGVAYIEKFA 778
Query: 451 KNELLLDAATQITS 464
N LLD A + +
Sbjct: 779 -NPSLLDIAVDLAT 791
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,835,621
Number of Sequences: 539616
Number of extensions: 7224428
Number of successful extensions: 20071
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 20044
Number of HSP's gapped (non-prelim): 28
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)