Query 008653
Match_columns 558
No_of_seqs 137 out of 160
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 14:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2307 Low density lipoprotei 100.0 6E-137 1E-141 1074.2 44.6 532 5-556 167-702 (705)
2 PF12022 DUF3510: Domain of un 100.0 2.3E-41 5E-46 305.7 12.6 125 390-520 1-125 (125)
3 PF10191 COG7: Golgi complex c 98.6 0.00013 2.8E-09 85.1 34.8 176 9-195 149-335 (766)
4 PF10474 DUF2451: Protein of u 97.5 0.0042 9E-08 62.5 16.4 125 372-530 41-169 (234)
5 PF04091 Sec15: Exocyst comple 96.1 0.15 3.3E-06 53.4 15.1 180 326-548 91-275 (311)
6 PF07393 Sec10: Exocyst comple 96.1 4.1 8.9E-05 47.6 43.5 481 6-546 74-664 (710)
7 PF06248 Zw10: Centromere/kine 92.2 3.9 8.4E-05 46.7 15.9 179 9-191 130-353 (593)
8 KOG2033 Low density lipoprotei 89.9 1.6 3.5E-05 49.5 9.4 78 418-527 639-716 (863)
9 PF04437 RINT1_TIP1: RINT-1 / 86.2 61 0.0013 36.1 20.9 357 85-468 4-397 (494)
10 PF14923 CCDC142: Coiled-coil 84.4 14 0.00031 40.6 12.7 83 384-469 231-319 (450)
11 KOG2180 Late Golgi protein sor 82.1 1.1E+02 0.0023 35.7 27.5 396 13-442 158-599 (793)
12 PF06046 Sec6: Exocyst complex 72.0 50 0.0011 37.3 12.9 162 327-531 315-476 (566)
13 PF08318 COG4: COG4 transport 67.0 42 0.0009 35.5 10.3 54 36-89 1-54 (331)
14 smart00762 Cog4 COG4 transport 64.7 34 0.00073 36.1 9.0 53 36-88 1-53 (324)
15 PF10475 DUF2450: Protein of u 57.9 89 0.0019 32.3 10.6 69 21-89 158-226 (291)
16 PLN03242 diacylglycerol o-acyl 37.2 15 0.00033 39.9 1.0 21 204-224 299-319 (410)
17 PLN02401 diacylglycerol o-acyl 34.5 18 0.00039 39.8 1.0 21 204-224 324-344 (446)
18 KOG1011 Neurotransmitter relea 33.7 1.2E+02 0.0025 35.0 7.0 74 366-440 876-949 (1283)
19 cd07609 BAR_SIP3_fungi The Bin 31.5 4.6E+02 0.0099 26.1 10.3 30 458-487 144-173 (214)
20 PF01535 PPR: PPR repeat; Int 30.6 46 0.001 21.0 2.2 23 65-87 5-27 (31)
21 PF01765 RRF: Ribosome recycli 27.4 5E+02 0.011 24.4 9.5 68 445-529 86-155 (165)
22 TIGR02957 SigX4 RNA polymerase 27.4 3.9E+02 0.0085 27.2 9.5 120 69-233 14-135 (281)
23 PF08154 NLE: NLE (NUC135) dom 26.0 51 0.0011 26.2 2.1 40 106-162 25-64 (65)
24 PF12854 PPR_1: PPR repeat 26.0 1E+02 0.0022 21.0 3.3 28 59-86 6-33 (34)
25 TIGR00756 PPR pentatricopeptid 25.0 88 0.0019 20.0 2.9 23 65-87 5-27 (35)
26 KOG3048 Molecular chaperone Pr 24.4 2.9E+02 0.0064 25.8 6.8 79 394-486 46-126 (153)
27 PF08287 DASH_Spc19: Spc19; I 23.0 2.4E+02 0.0052 26.6 6.3 18 394-411 16-34 (153)
28 cd07356 HN_L-whirlin_R1_like F 22.8 3E+02 0.0065 22.9 5.9 49 43-98 8-66 (78)
29 PRK14011 prefoldin subunit alp 22.4 1.4E+02 0.0031 27.8 4.6 77 395-488 37-115 (144)
30 PF15151 RGCC: Response gene t 21.7 1.5E+02 0.0032 26.5 4.2 34 459-492 21-58 (121)
31 PF14214 Helitron_like_N: Heli 21.6 4.3E+02 0.0093 25.0 8.0 68 106-186 82-153 (184)
32 PF08397 IMD: IRSp53/MIM homol 21.4 2.9E+02 0.0063 27.2 6.9 54 424-492 80-133 (219)
33 PF03704 BTAD: Bacterial trans 21.1 5.9E+02 0.013 22.6 9.8 79 32-120 50-146 (146)
34 PHA00442 host recBCD nuclease 21.1 1.5E+02 0.0033 23.0 3.6 44 507-552 11-58 (59)
35 PF13428 TPR_14: Tetratricopep 20.6 99 0.0021 22.0 2.5 22 66-87 7-28 (44)
No 1
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-137 Score=1074.22 Aligned_cols=532 Identities=36% Similarity=0.566 Sum_probs=486.3
Q ss_pred hHHHHHHHHHHhhhhhhccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHH
Q 008653 5 SIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFC 84 (558)
Q Consensus 5 ~~~~~~~E~nqL~f~~~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r 84 (558)
+.-|.|.|+|||+||+++|+++ +..++++||++++.+|+++|+++|++||+ .+.+.+++|||+|++||+++.||++||
T Consensus 167 sLERiAlelnqlkf~a~h~k~~-l~p~~e~ria~~~~~L~qsl~~lf~eglq-sa~~~l~nclriYatld~t~~ae~lfr 244 (705)
T KOG2307|consen 167 SLERIALELNQLKFHASHLKGS-LFPHSEERIAAEKIILSQSLAVLFAEGLQ-SAAGDLQNCLRIYATLDLTESAESLFR 244 (705)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 4568899999999999999999 88889999999999999999999999995 599999999999999999999999999
Q ss_pred HHhhHHHHhhhCCCCCCccccCCCcchHHHHHHHHHHHHH-HhhHHHHHhhhhccCCCcccccccccchHHHHHHHHhcC
Q 008653 85 NTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVE-KDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGK 163 (558)
Q Consensus 85 ~~vV~P~~~~ii~~~~~~~~~~~s~~gL~~iy~~il~fv~-~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l 163 (558)
..||+||++++|+|+.. .+||+||.++|++|++||+ ++|+.+++++....+|++|||||+||+|++|..+|+++|
T Consensus 245 ~~vvapyi~evI~eq~~----e~sp~gl~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l~~ilt~iek~m 320 (705)
T KOG2307|consen 245 LLVVAPYIAEVINEQHD----ETSPSGLLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLLTFILTFIEKCM 320 (705)
T ss_pred HHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887 7899999999999999999 999999999977777899999999999999999999999
Q ss_pred CccccCCCchHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHhhchhHHHHHHhhccchhHHHHHHHHHHhHHHhhccccc
Q 008653 164 PGAFSPGRPTQFLRNYKSSLDFLAYLEG--YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASL 241 (558)
Q Consensus 164 ~~iFapG~Pd~F~~nY~~t~~Fl~~lE~--~c~S~~~v~~lR~h~~y~~F~~rWNLpVYFQlRfqEIa~~lE~aL~~~~~ 241 (558)
|++|+||||++||+||++|++||++||+ .|+|+.+|++||+||.|++||+|||||||||||||||||++|++|+ +.+
T Consensus 321 ps~f~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~ 399 (705)
T KOG2307|consen 321 PSVFVPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEM 399 (705)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcC-chh
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999998 554
Q ss_pred ccccCCCCCCCCCcccchhhHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCcc
Q 008653 242 APVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEW 321 (558)
Q Consensus 242 ~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~VfL~~L~~rFwkLtLQllsRy~~Wi~~~~~~~~~~~~~~~~~~~~ 321 (558)
...+..+++.++..+|++.+|.++|+||+|||+||||||++.|||||||||+++||+.|+++ +.+.. +++.+ .|
T Consensus 400 ~~d~l~d~~~Est~~l~l~as~a~~ealrrcWsddvylp~~vdKl~rltlQlllRysrwisa-itns~----gs~~s-kp 473 (705)
T KOG2307|consen 400 FADPLTDENRESTPQLHLGASRAIIEALRRCWSDDVYLPPIVDKLWRLTLQLLLRYSRWISA-ITNSF----GSEKS-KP 473 (705)
T ss_pred hcccccccccccCccchhhHhHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHhHHHHH-HHhcc----CCCCC-CC
Confidence 44433344445656899999999999999999999999999999999999999999999984 44321 22211 33
Q ss_pred cccCChhhHHHHHHh-HHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHh
Q 008653 322 AISAAPDDFIYIIHD-INCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVED 400 (558)
Q Consensus 322 ~~~~~~~~lv~l~~D-i~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~ 400 (558)
.+..+++++++| +.++.+.+|. ++++|+++++..+....+.+.++|+.++.+|.+++|.+.+.||+.+++.|...
T Consensus 474 ---~trtqlvyv~hdd~~llqevl~e-lle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~ 549 (705)
T KOG2307|consen 474 ---ATRTQLVYVRHDDGNLLQEVLPE-LLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQE 549 (705)
T ss_pred ---cchhheeeeecccchHHHHHhHH-HHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455788888855 5555555555 99999999998886666777789999999999999999999999999999999
Q ss_pred hhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008653 401 LRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKT 480 (558)
Q Consensus 401 Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~Kt 480 (558)
|+||+||||+|||||||+||+||+||.++|+|+++|.++.+. .|.+.+.+||+.+|.+++|.+|++.++|||+||+||
T Consensus 550 lrqv~dvprlyR~TnKevPtthSsYVv~aLrpvkal~eg~k~--~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~kt 627 (705)
T KOG2307|consen 550 LRQVSDVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKC--ELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKT 627 (705)
T ss_pred HHHHhccHHHHHhccCCCCCcchHHHHHHHHHHHHHHHhhhh--hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999977 789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHhcccccccccc
Q 008653 481 ESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI 556 (558)
Q Consensus 481 EeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lgv~~~~i~~~~~L~~~V~~~~~~~~~ 556 (558)
|+||+|||+.+++++|+ ++.++++||||||||+||++||++|+.++++||+++++|.+|++|.+++....++..+
T Consensus 628 esSL~Rlkq~~~~~~g~-s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~fqa~di~~~~~lvel~~~~~dsa~~ 702 (705)
T KOG2307|consen 628 ESSLSRLKQKTTTDSGS-SGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVFQAADITGLQELVELFDKDADSAIV 702 (705)
T ss_pred HHHHHHHHhhccCCCCC-CCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcchHhhhhhHHHHHHHHHhhhhhhhh
Confidence 99999999999875554 5555689999999999999999999999999999999999999999999888777654
No 2
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=100.00 E-value=2.3e-41 Score=305.69 Aligned_cols=125 Identities=47% Similarity=0.794 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008653 390 VDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHEL 469 (558)
Q Consensus 390 v~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~ 469 (558)
|++|+++|+++|++|++||++|||||||+||+||+||++||+||++|+++... .++++..++|+.+|+++|+++|++.
T Consensus 1 v~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~--~~~~~~~~~~~~~v~~~v~~~y~~~ 78 (125)
T PF12022_consen 1 VQSLTERCVEPLKQVRSIPRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEYSS--YLSPEIIEEWLQKVITEVTERYYEI 78 (125)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhhccCCCCCCCccHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999998855 8999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHH
Q 008653 470 AAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDI 520 (558)
Q Consensus 470 v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv 520 (558)
++|||++|+||||||+||||++++.+|++ ++|+||+||||+||+|||
T Consensus 79 ~~evL~sv~KtEeSL~rlkk~~~~~~~~~----~~~~sD~dKIr~QL~LDV 125 (125)
T PF12022_consen 79 ASEVLTSVRKTEESLKRLKKRRKRTSGSS----SGGMSDDDKIRLQLYLDV 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc----CCCCCcHHHHHHHHHccC
Confidence 99999999999999999999997533322 267999999999999997
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.61 E-value=0.00013 Score=85.07 Aligned_cols=176 Identities=18% Similarity=0.269 Sum_probs=124.2
Q ss_pred HHHHHHHhhhhhhccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHHHHhh
Q 008653 9 SSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVV 88 (558)
Q Consensus 9 ~~~E~nqL~f~~~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV 88 (558)
.|.=+-.++=...--+++|-.+.=+..++..+..|.+.+...++.+++.+|.+...+|..+|..||+....+..+.+.-.
T Consensus 149 ~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~ 228 (766)
T PF10191_consen 149 IADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRK 228 (766)
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333333468886666689999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhh---CCCCCCccccCCCcchHHHHHHHHHHHHHHhhHHHHHhhhhccCCCcccccccccchHHHHHHHHh----
Q 008653 89 APLMQKI---IPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQK---- 161 (558)
Q Consensus 89 ~P~~~~i---i~~~~~~~~~~~s~~gL~~iy~~il~fv~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~---- 161 (558)
.|..+.= .....- .+-..=|.+.|+.++..+..+++-...+=.. .+. ++-.++.++...|.-
T Consensus 229 ~~l~~~W~~~~~~~~~----~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~------~~~-~~~~ll~~~L~~L~PS~~~ 297 (766)
T PF10191_consen 229 APLQRLWQEYCQSDQS----QSFAEWLPSFYDELLSLLHQELKWCSQVFPD------ESP-VLPKLLAETLSALQPSFPS 297 (766)
T ss_pred HHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------chh-HHHHHHHHHHHhcCccHHH
Confidence 8876552 222110 1234568899999999999988865544211 122 344444444444433
Q ss_pred cCCccccCCCc----hHHHHHHHHHHHHHHHHHhhCCC
Q 008653 162 GKPGAFSPGRP----TQFLRNYKSSLDFLAYLEGYCPS 195 (558)
Q Consensus 162 ~l~~iFapG~P----d~F~~nY~~t~~Fl~~lE~~c~S 195 (558)
++..+..++.| ...-.-|.+|..|...+|....+
T Consensus 298 ~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 298 RLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333433443 56778899999999999996544
No 4
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=97.51 E-value=0.0042 Score=62.48 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=86.9
Q ss_pred HhhchhhhccchhHHHHHHHHHHHHHHHhhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc----ccccCCC
Q 008653 372 LEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE----RAMTYLT 447 (558)
Q Consensus 372 ~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~----~~~~~l~ 447 (558)
.+-....-+..|.+...+...++.+....-.-+..|+.. +|.-|++|++||+||+.+++-++.|...- +.. .++
T Consensus 41 ~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~v-KWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~-~i~ 118 (234)
T PF10474_consen 41 EQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANV-KWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQG-PIP 118 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 333333445567777778877777776444445566665 89999999999999999999999997643 222 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008653 448 PEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSL 527 (558)
Q Consensus 448 ~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i 527 (558)
++....++..++.-+++... |-..|.||-.. ++ |.+|.||++.|...+
T Consensus 119 ~~~~~~lw~~~i~~~~~~Lv--------------eg~s~vkKCs~----------------eG--RalM~lD~q~~~~~l 166 (234)
T PF10474_consen 119 PEVQNVLWDRLIFFAFETLV--------------EGYSRVKKCSN----------------EG--RALMQLDFQQLQNKL 166 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHhccCCCh----------------hh--HHHHHHHHHHHHHHH
Confidence 88777777666655544432 24555543321 11 788888999999999
Q ss_pred Hhc
Q 008653 528 AAL 530 (558)
Q Consensus 528 ~~l 530 (558)
+++
T Consensus 167 e~l 169 (234)
T PF10474_consen 167 EKL 169 (234)
T ss_pred HHH
Confidence 988
No 5
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.12 E-value=0.15 Score=53.44 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=97.0
Q ss_pred ChhhHHHHHHhHHHHHHHhhhhHHHHHHHHhcc-CChhhHHHHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHhhhhh
Q 008653 326 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSS-CSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQL 404 (558)
Q Consensus 326 ~~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~-~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v 404 (558)
...+++-+..+++-|...... +.+.|...... .+.+. ..-..+.+.+.+....-...|.+.+-.+.-+.|
T Consensus 91 ~l~qi~Qi~iNl~~le~Ac~~-le~~l~~~~~~~~~~~~-----~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l--- 161 (311)
T PF04091_consen 91 NLSQIVQIVINLEYLEKACKE-LEEFLSSLRGIPQSAGG-----HIRLKATKMFKDARKAAEKRIFELVNSKIDEFL--- 161 (311)
T ss_dssp -HHHHHHHHHHHHHHHTTHHH-HHHHHHHHHT---------------------S---TTHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHhHHHHHHHHHH-HHHHHHHHcCCCccchH-----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 457788888888888766665 55555554421 11110 011222333433333344455555544444444
Q ss_pred ccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008653 405 KGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL 484 (558)
Q Consensus 405 ~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL 484 (558)
+ ..-|-||-.++|+.||.|+..++.=|+.-.+..-. .||.++++.+..++++++++++.+. |. .+..
T Consensus 162 -e-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~--~LP~~v~~~~~~~a~~his~~l~~~----Ll-----~~~v 228 (311)
T PF04091_consen 162 -E-LAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLT--NLPPSVKQLVYFSACDHISESLLDL----LL-----SDDV 228 (311)
T ss_dssp -T-T--TT--------S--HHHHHHHHHHHHHHHTTTT--TSH-HHHHHHHHHHHHHHHHHHHHH----HT---------
T ss_pred -h-hcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH----hc-----CCcc
Confidence 2 24588999999999999999999999988865433 7899999999999999999999984 42 1222
Q ss_pred HHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc---CCC-CCCCccHHHHHHhcc
Q 008653 485 LKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL---GVQ-AADIPPYRSLWQCVA 548 (558)
Q Consensus 485 ~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~l---gv~-~~~i~~~~~L~~~V~ 548 (558)
+| -.. +| =.|+-+||.++..-++.+ |.+ ..-...|.+|.++|.
T Consensus 229 k~---in~---~a---------------l~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvd 275 (311)
T PF04091_consen 229 KR---INM---NA---------------LQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVD 275 (311)
T ss_dssp -----------TT---------------HHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHH
T ss_pred cc---cCH---HH---------------HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHH
Confidence 22 211 11 258999999999999988 222 233467888888764
No 6
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=96.09 E-value=4.1 Score=47.55 Aligned_cols=481 Identities=15% Similarity=0.156 Sum_probs=248.8
Q ss_pred HHHHHHHHHHhhhhhhccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHHH
Q 008653 6 IIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCN 85 (558)
Q Consensus 6 ~~~~~~E~nqL~f~~~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~ 85 (558)
+...|.=..+|+-+.+.-.+.|-.++.+.+|+.....+-+.|=..|..+.+.+|.+.+.+|-++...++....+-+.|=.
T Consensus 74 ~~~~A~il~~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~ 153 (710)
T PF07393_consen 74 PEEAAKILRNLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFIN 153 (710)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 34555556667666655548888899999999999999999999999999999999999999999999988866665544
Q ss_pred HhhHHHHh--hhCCC----------CCCc---cccCCCcchHHHHHHHHHHHHHHhhHHHHHhhhhccCCCcccc-----
Q 008653 86 TVVAPLMQ--KIIPH----------GPSE---ALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFD----- 145 (558)
Q Consensus 86 ~vV~P~~~--~ii~~----------~~~~---~~~~~s~~gL~~iy~~il~fv~~~~~~lleit~~~~~~~~~~d----- 145 (558)
.- +++. .-+.+ ..+. ........+|..+|+.|...+..+...+-.+= .+..+..-
T Consensus 154 k~--~~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VF---p~~~~Vm~~fier 228 (710)
T PF07393_consen 154 KH--EFFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVF---PNPEPVMQKFIER 228 (710)
T ss_pred hC--hhhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHC---CCcHHHHHHHHHH
Confidence 11 1111 01100 0000 00122335799999999999999888665552 11111111
Q ss_pred cccccchHHHHHHHHhcCCccccCCCch----HHHHHHHHHHHHHHHHHhhCCC---------HHHHHHHhh-----c--
Q 008653 146 FLANSILKEVLSAIQKGKPGAFSPGRPT----QFLRNYKSSLDFLAYLEGYCPS---------RSAVAKFRA-----E-- 205 (558)
Q Consensus 146 fl~nsvw~ev~~~l~~~l~~iFapG~Pd----~F~~nY~~t~~Fl~~lE~~c~S---------~~~v~~lR~-----h-- 205 (558)
++.+.|-+-|..-|..... .++. .+|.-|..+..|++.|.....+ ...+..+-. |
T Consensus 229 vf~~~I~~~i~~lL~~a~~-----~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~~l~ 303 (710)
T PF07393_consen 229 VFEQVIQEYIESLLEEASS-----ISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEPYLE 303 (710)
T ss_pred HHHHHHHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHcC
Confidence 2222222223322222221 1444 4456688999999999887222 111221111 1
Q ss_pred -hhHHHHH------------HhhccchhHHHH-----------HHHHHHhHHHhhcc-----------------cccccc
Q 008653 206 -AIYVEFM------------KQWNVGVYFSLR-----------FQEIAGALDSALTA-----------------ASLAPV 244 (558)
Q Consensus 206 -~~y~~F~------------~rWNLpVYFQlR-----------fqEIa~~lE~aL~~-----------------~~~~~~ 244 (558)
..|...+ .+|+ -|- =| -+.+...+..++.. ..+.+.
T Consensus 304 ~~~Yl~~E~~~l~~~~~~~l~~f~--~~~-e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (710)
T PF07393_consen 304 DDEYLEEEKRSLKELLESILSRFN--ELH-EREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKLDRS 380 (710)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH--HHH-HHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhcccCcc
Confidence 2232222 3333 110 00 01111112122110 000000
Q ss_pred cC-----------------CCCCCCCCcccchhhH----HHHHHHHhhhc--cCCccccccchHHHHHHHHHH-HHHHHH
Q 008653 245 QN-----------------SNSNQGNSQALTLKQS----VTLLDSMKSCW--RQDVFLLPCSDKFLRLSLQLL-SRYSNW 300 (558)
Q Consensus 245 ~~-----------------~~~~~~~~~~f~l~~s----~~l~~~l~~cW--s~~VfL~~L~~rFwkLtLQll-sRy~~W 300 (558)
.. .....+....+.+... +..-+++.||= ++.--++.-+...+.+.++-+ .+|.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i-- 458 (710)
T PF07393_consen 381 QQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHI-- 458 (710)
T ss_pred cccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHH--
Confidence 00 0000011112333332 34445666663 344445555566666666655 5553
Q ss_pred HhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhc
Q 008653 301 LSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSS 380 (558)
Q Consensus 301 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~ 380 (558)
+.++.+...+....+... ........ +..++.-++.+...+...|.+.|.|.+.. .++....+.+........++.
T Consensus 459 -~~~lea~~~~~~~~~~~~-~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~~~-~~~~~~~~~~~k~~~~~~le~ 534 (710)
T PF07393_consen 459 -EPALEAAYYKLSSQDIAE-SKEVPPLV-FLELINQADTILQLLQIFYKEELLPLIQS-SPDFLNECIQKKKSFESRLEE 534 (710)
T ss_pred -HHHHHHHHhhhhcccccc-cCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHH
Confidence 344431100000000000 00001223 66777777888888888777777777642 233322223333333344444
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhhhhccCCC-----CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHH
Q 008653 381 MLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKP-----LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELL 455 (558)
Q Consensus 381 ~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~-----~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~ 455 (558)
.+....+..++.+...+...|. ..=+.=|+..+-+ .||.+|.-|-..|..+..-+.+ .+.... +
T Consensus 535 ~v~~gL~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~-----~l~~~n----l 603 (710)
T PF07393_consen 535 KVNAGLNKGIDVLMNWVEFILS--EQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKG-----SLDGSN----L 603 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHH-----Hccchh----H
Confidence 4444445555566654444443 4556667763322 4666665555555554443332 344333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 008653 456 LDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAA 535 (558)
Q Consensus 456 ~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lgv~~~ 535 (558)
..++.++..+++... .+-++|++=.. .|| +||.-|+.+|.+-+..+|++.
T Consensus 604 ~~f~~elg~~l~~~l----------~~h~kk~~vs~-----------~Gg--------~~l~~Dl~~Y~~~~~~~~~~~- 653 (710)
T PF07393_consen 604 DVFLQELGERLHRLL----------LKHLKKFTVSS-----------TGG--------LQLIKDLNEYQDFIRSWGIPS- 653 (710)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHhCccCc-----------hhH--------HHHHHHHHHHHHHHHHcCCch-
Confidence 455677788888742 12344432111 111 789999999999999998753
Q ss_pred CCccHHHHHHh
Q 008653 536 DIPPYRSLWQC 546 (558)
Q Consensus 536 ~i~~~~~L~~~ 546 (558)
=.+.|..|.++
T Consensus 654 v~~~F~~L~~l 664 (710)
T PF07393_consen 654 VDEKFEALKEL 664 (710)
T ss_pred HHHHHHHHHHH
Confidence 34667777663
No 7
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=92.15 E-value=3.9 Score=46.70 Aligned_cols=179 Identities=10% Similarity=0.109 Sum_probs=109.5
Q ss_pred HHHHHHHhhhhh--hccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhh-----c-----------------CCH--HH
Q 008653 9 SSYIMFSSRFSI--LPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLE-----H-----------------QNA--NV 62 (558)
Q Consensus 9 ~~~E~nqL~f~~--~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~-----~-----------------~~~--~~ 62 (558)
.-.|..++...+ ..+.++..+..|+.+.......|...|+..+...+. . .+. ..
T Consensus 130 ~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~ 209 (593)
T PF06248_consen 130 LLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQES 209 (593)
T ss_pred HHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccch
Confidence 333444444443 234567889999999999999999999999987653 0 111 23
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhCCCCCCcc----cc---------------CCCcchHHHHHHHHHHHH
Q 008653 63 IYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEA----LA---------------GASGDELESDYEQIKQCV 123 (558)
Q Consensus 63 L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~~ii~~~~~~~----~~---------------~~s~~gL~~iy~~il~fv 123 (558)
|..+|.+...+|.....-+-|++.++.=.+.-+|....... .. ......-..+|++|+.++
T Consensus 210 L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf 289 (593)
T PF06248_consen 210 LQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVF 289 (593)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHH
Confidence 99999999999999888888888776544444442211100 00 011123467888877766
Q ss_pred HHhhHHHHHhhhhccCCCcccccccccchHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh
Q 008653 124 EKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG 191 (558)
Q Consensus 124 ~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~ 191 (558)
..-...++...... ..-+..++..+||++.+.|..+.-.-=-|.+.+.+.. |....+-+..||.
T Consensus 290 ~fL~~~L~~~~~~~---~~l~~~~g~~i~~~ls~~lI~~~L~~aiP~~~~~l~~-f~~v~~~~~~Fe~ 353 (593)
T PF06248_consen 290 EFLHQHLLSLPSSD---SSLSESFGDHIWPRLSELLISNCLSPAIPTSASELQE-FEEVLESVEEFEE 353 (593)
T ss_pred HHHHHHhcccCCch---hHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCHHHHHH-HHHHHHHHHHHHH
Confidence 65444444321100 0235789999999999988776422233444444443 6655544444444
No 8
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=89.85 E-value=1.6 Score=49.52 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=62.9
Q ss_pred CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCC
Q 008653 418 LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGA 497 (558)
Q Consensus 418 ~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~ 497 (558)
.|..||.||.+.+.-|.+-++....+ .|++.+.++++...+..++-.|-. +...+.++.
T Consensus 639 LPsqPslyiqSfL~rl~qeInrvggh-~Lp~~vLQ~f~~sl~~k~~~~YE~-----l~~a~~~ka--------------- 697 (863)
T KOG2033|consen 639 LPSQPSLYIQSFLQRLHQEINRVGGH-TLPPKVLQAFIQSLIGKLLCHYEG-----LAHAECTKA--------------- 697 (863)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHH---------------
Confidence 89999999999999999988876554 799999999999999999999988 445555432
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008653 498 SSDVSDHNVSDTDKICMQLFLDIQEYGRSL 527 (558)
Q Consensus 498 ~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i 527 (558)
.+||-+||++|..+...-+
T Consensus 698 -----------sqn~aLQll~DLrfl~~Vl 716 (863)
T KOG2033|consen 698 -----------SQNIALQLLFDLRFLERVL 716 (863)
T ss_pred -----------HHhhHHHHHHHHHHHHHHH
Confidence 1567788888887766544
No 9
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=86.23 E-value=61 Score=36.14 Aligned_cols=357 Identities=16% Similarity=0.190 Sum_probs=159.5
Q ss_pred HHhhHHHHhhh---CCCCCCccccCCCcchHHHHHHHHHHHHHHhhHHHHHhh---hhccCCCcccc---cccccchHHH
Q 008653 85 NTVVAPLMQKI---IPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDIS---SAENSGLHVFD---FLANSILKEV 155 (558)
Q Consensus 85 ~~vV~P~~~~i---i~~~~~~~~~~~s~~gL~~iy~~il~fv~~~~~~lleit---~~~~~~~~~~d---fl~nsvw~ev 155 (558)
+.+|.|+..+- +.-... -+.++.-+=.|+.|++++..+...+.++. -.. .+..++| =+.+++.+.+
T Consensus 4 ~~l~~p~~~rF~yHF~~~r~----Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~-~~~~~~~~~~~fi~~ll~~~ 78 (494)
T PF04437_consen 4 DVLVNPFKKRFRYHFMGNRP----TNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDE-NGLTYIDAREEFIRGLLPPV 78 (494)
T ss_dssp HHHCHHHHHHHHHHT----S-------CCCHHHHHHHHHHHHHHH---HHHHHHHH-BG-GTB-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCC----cCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHh-cCCccccHHHHHHHHHHHHH
Confidence 45778887775 221111 24455567778888888888844443332 222 2333333 2358888998
Q ss_pred HHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhh---CC-CH-HHHHHHhhchhHHHHHHhhccchhHHHHHHHHHH
Q 008653 156 LSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGY---CP-SR-SAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAG 230 (558)
Q Consensus 156 ~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~---c~-S~-~~v~~lR~h~~y~~F~~rWNLpVYFQlRfqEIa~ 230 (558)
.+.|...++. ...+|..|.--=--.+.|=++|-.. .+ .. ..+..|- +|.+ ..+| .++..+.-..
T Consensus 79 ~~Kl~~~l~~--~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~-~~~~---~~~W-----l~~E~~~a~~ 147 (494)
T PF04437_consen 79 REKLRSDLPE--LLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLC-QPDW---FDRW-----LNAEKEFALE 147 (494)
T ss_dssp HHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS--HHH---HHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHh--hccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhc-chHH---HHHH-----HHHHHHHHHH
Confidence 8888887773 6678888877777777887777663 23 11 1222222 2222 1333 3444444444
Q ss_pred hHHHhhcccccccccCCCCCCCCCcccchhhH---HHHHHHHhhhccCCccccccch--HHH-HHHHHHHHHHHHHHhhh
Q 008653 231 ALDSALTAASLAPVQNSNSNQGNSQALTLKQS---VTLLDSMKSCWRQDVFLLPCSD--KFL-RLSLQLLSRYSNWLSSG 304 (558)
Q Consensus 231 ~lE~aL~~~~~~~~~~~~~~~~~~~~f~l~~s---~~l~~~l~~cWs~~VfL~~L~~--rFw-kLtLQllsRy~~Wi~~~ 304 (558)
++++.+..+..-........ .. .-.++++ ..+..-|+..=+----||.+.| ||+ ++-+.+|..|..++.+.
T Consensus 148 r~~~i~~s~~aw~~~~~~~~-~~--~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~ 224 (494)
T PF04437_consen 148 RFDEIISSPDAWQIDYDDVE-AD--SDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQS 224 (494)
T ss_dssp HHH---------------HT-TS--SGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHH
T ss_pred HHhhhcccchhhhhhhcccc-CC--chhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554442110000000000 01 1122222 2222222222222223555555 458 88888999999888877
Q ss_pred hccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHhhh-----hHHHHHHHHhccCCh---hhHHHHH---H-HHH
Q 008653 305 LAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSG-----DYLTHVLQLLSSCSS---EVLDLVK---Q-SIL 372 (558)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~-----~~~~~i~~~l~~~~~---~~~~~~~---~-~l~ 372 (558)
+.+-... +++ ..........+.++.++.=++-+...+.+ .|++.-.......+. +...... . .+.
T Consensus 225 ~~~~~~~-~s~--~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFd 301 (494)
T PF04437_consen 225 LEAFESS-TST--LASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFD 301 (494)
T ss_dssp HHHHHHT-------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTH
T ss_pred HHHHhhc-ccc--hhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHH
Confidence 5442210 000 11111112334566666665555555544 122100000000000 0000000 0 123
Q ss_pred hhchhhhccchhHHHHHHHHHHHHHHHhhhhhccchhhhhccCC-----CCCCCCCcchHhhhHhHHHHHhccccccCCC
Q 008653 373 EGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNK-----PLPVRHSPYVSGVLRPLKTLLEGERAMTYLT 447 (558)
Q Consensus 373 e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk-----~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~ 447 (558)
+....+..+...+.+.|+..+...-...||.=....+ |+.- +.|..+|+-....|.-|+..+..-.. .|+
T Consensus 302 e~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~---W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~--~L~ 376 (494)
T PF04437_consen 302 ETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQ---WSSIESPSDSSPLSPSPELVPALSLLRSRLSFLER--SLP 376 (494)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--G---GGT-------------GGGHHHHHHHHHHHHHHHT--S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC---CCCcccccccccCCCCHHHHHHHHHHHHHHHHHHH--HcC
Confidence 3334444444445555555555554444444222111 2222 34688999999999999998877655 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008653 448 PEAKNELLLDAATQITSRYHE 468 (558)
Q Consensus 448 ~e~~~~~~~~v~~~vt~~Y~~ 468 (558)
+.....+...+++.+...+.+
T Consensus 377 ~~~f~~i~r~ia~~l~~~l~~ 397 (494)
T PF04437_consen 377 PADFRRIWRRIASKLDDYLWE 397 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 988889999999888887776
No 10
>PF14923 CCDC142: Coiled-coil protein 142
Probab=84.39 E-value=14 Score=40.61 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHH----hhhhhccchhhhhccCCC-CCCCCCcchHhhhHhH-HHHHhccccccCCCHHHHHHHHHH
Q 008653 384 VVINTIVDALVEKAVE----DLRQLKGITATYRMTNKP-LPVRHSPYVSGVLRPL-KTLLEGERAMTYLTPEAKNELLLD 457 (558)
Q Consensus 384 ~l~~~iv~~l~~~c~~----~Lk~v~~Ip~~YR~Tnk~-~Pt~~S~YV~~il~PL-~~F~~~~~~~~~l~~e~~~~~~~~ 457 (558)
.+.+.++..+...|.. .+..+==-.+-.|+-..+ .|+.||.||..++.-+ .-.+.+.. .++++.....+..
T Consensus 231 ~~s~e~~~~f~~~C~~~s~~~f~~~mP~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q---~L~~~aq~~~l~~ 307 (450)
T PF14923_consen 231 SLSSECLRLFSQDCRKMSLAIFELCMPSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQ---GLPPEAQIPALSQ 307 (450)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 4445566666666655 444444446667765544 6999999998554433 11123321 4666666666666
Q ss_pred HHHHHHHHHHHH
Q 008653 458 AATQITSRYHEL 469 (558)
Q Consensus 458 v~~~vt~~Y~~~ 469 (558)
+++.+++.....
T Consensus 308 ~l~a~~eAWLdh 319 (450)
T PF14923_consen 308 ALTAMLEAWLDH 319 (450)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 11
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.10 E-value=1.1e+02 Score=35.68 Aligned_cols=396 Identities=16% Similarity=0.145 Sum_probs=193.8
Q ss_pred HHHhhhhhhccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHH-------HHH
Q 008653 13 MFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEI-------FCN 85 (558)
Q Consensus 13 ~nqL~f~~~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~-------~r~ 85 (558)
++||.=|-.+-++.|=|.++..+|+.+...|.+++-.-|.++...+.. =+.-..+++..||+.+ +|+
T Consensus 158 i~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~------~~~~~~l~~l~daC~v~d~lepsvre 231 (793)
T KOG2180|consen 158 ILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGET------HEEALLLQKLSDACLVVDALEPSVRE 231 (793)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------CCCccHHHHHHHHHHHHHHhCCccHH
Confidence 455555667778999999999999999999999998888877654432 0001123333344433 457
Q ss_pred HhhHHHHhhh-------CCCCCCccccCCCcchHHHHHHHHHHHHHHhhHHHHHhhhhccCCCcccccccccchH----H
Q 008653 86 TVVAPLMQKI-------IPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILK----E 154 (558)
Q Consensus 86 ~vV~P~~~~i-------i~~~~~~~~~~~s~~gL~~iy~~il~fv~~~~~~lleit~~~~~~~~~~dfl~nsvw~----e 154 (558)
.+|+-|+++- +.++.- .++.+.+..-|.-+...+..-=.-+.+|= ... =..++=-..... .
T Consensus 232 elIkwf~~qqL~ey~~IF~en~E----~a~LDkidrRY~wfKr~L~~fe~k~~~iF---P~d-W~v~~RLt~eFc~~Tr~ 303 (793)
T KOG2180|consen 232 ELIKWFCSQQLEEYEQIFRENEE----AASLDKLDRRYAWFKRLLRDFEEKWKPIF---PAD-WHVAYRLTIEFCHQTRK 303 (793)
T ss_pred HHHHHHHHHHHHHHHHHHhccHh----hhhhhhHHHHHHHHHHHHHHHHHhccccC---Ccc-cchhHHHHHHHHHHHHH
Confidence 7777777663 332221 34566777777776654332111000000 000 000010011111 2
Q ss_pred HHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhCCC--------HHHH----HHHhhchhHHHHHHhh--ccchh
Q 008653 155 VLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPS--------RSAV----AKFRAEAIYVEFMKQW--NVGVY 220 (558)
Q Consensus 155 v~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~S--------~~~v----~~lR~h~~y~~F~~rW--NLpVY 220 (558)
....|++++ +.=-+-+.|.---..|.+|=..|+...+. ..+. .++ +-+....+-+ -|-+|
T Consensus 304 ~L~~Il~~~---~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~---~f~~~isScFEPhLtly 377 (793)
T KOG2180|consen 304 QLESILKRR---KKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERF---NFEGAISSCFEPHLTLY 377 (793)
T ss_pred HHHHHHHHh---hhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccccc---chhhHHHHhcccchhhh
Confidence 223344443 22334467888888889998888875421 1111 010 1122222222 47899
Q ss_pred HHHHHHHHHHhHHHhhcccccccccCCCCCCCCCcccchhhHHHHHHHHhhhccCCccccccchHHHHHHH---HHHHHH
Q 008653 221 FSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSL---QLLSRY 297 (558)
Q Consensus 221 FQlRfqEIa~~lE~aL~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~VfL~~L~~rFwkLtL---QllsRy 297 (558)
+..-=|+...-||.-.+.+.....+.. ..+...-.++.+.-++.+.++|-..-.=|..=.+-...+.. .-+.+|
T Consensus 378 I~~qek~l~ellek~v~e~~~~~~p~~---~~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~dpl~~~~~~f~k~LreY 454 (793)
T KOG2180|consen 378 IESQEKELSELLEKFVSEEKWDGEPKS---NTDEESLVLPSSADLFVAYKKCLTQCSELSENNDPLIALLAVFSKWLREY 454 (793)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCC---CcccccccCccHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 999889999999988874332211111 12223456788888888888887722222221133333333 234445
Q ss_pred HHHHhhhhccccCCCCCCCCCC---c-------ccccCChhhHHHHHHhHHHHHHHhhhhHHHHHHHHhccCChhhHHHH
Q 008653 298 SNWLSSGLAARSSGHASFNPGN---E-------WAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLV 367 (558)
Q Consensus 298 ~~Wi~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~ 367 (558)
+.=|-.+. -+..++...+. . ..+...+++++-+. ++-.-..+++. .......+|...... ..+
T Consensus 455 a~kil~~~---lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~-~~lst~e~~~~-tt~qle~kl~e~~~~--~~~ 527 (793)
T KOG2180|consen 455 AQKILLGN---LPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDIC-CILSTAEYCLA-TTIQLEKKLKEIVDA--SYI 527 (793)
T ss_pred HHHHhhcc---CCcccccccCchhhhHHHhhhhhhhcccHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHH--HHh
Confidence 44333222 11111111110 0 00011112222211 11111112211 000111111110000 000
Q ss_pred H-HHHHhhchhhhccchhHHHHHHHHHHHHHHHhhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcccc
Q 008653 368 K-QSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERA 442 (558)
Q Consensus 368 ~-~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~ 442 (558)
. -++.+..+......-.....+|+.+...|...|..+.-+ ||+|=+--+.-|+||+++..-+.+|.....+
T Consensus 528 ~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~----~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~ 599 (793)
T KOG2180|consen 528 KGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKM----QWQNLEGVGDQSSYVSSLNFHLSQFVPLIRD 599 (793)
T ss_pred hhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHH----HHHHhcCccccchhhHHHHHHHHhhhHHHHH
Confidence 0 011111111222222334568889999999888776543 3777776679999999998888888754433
No 12
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=72.00 E-value=50 Score=37.31 Aligned_cols=162 Identities=12% Similarity=0.159 Sum_probs=87.1
Q ss_pred hhhHHHHHHhHHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHhhhhhcc
Q 008653 327 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 406 (558)
Q Consensus 327 ~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~ 406 (558)
.+.+++++.|+..+...+.. +.+.+... .+.+.-..+...+.+..+.+..+.....+.+++.+...+-.+++.+-
T Consensus 315 ~eyliA~~N~~~~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lf- 389 (566)
T PF06046_consen 315 LEYLIAVANNCLRCRDYVES-LEQKFEEK---VSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLF- 389 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---S-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTT-
T ss_pred HHHHHHHhccHHHHHHHHHH-HHHhcccc---cchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC-
Confidence 46789999999998875544 33323222 22222122223333333333333323333333333332222222221
Q ss_pred chhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008653 407 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 486 (558)
Q Consensus 407 Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~R 486 (558)
|++=.-. ..|..|+.-+..|..+.+. ++.+...+.++..+...+...|.... +. ||
T Consensus 390 -------t~~W~~~---~~~~~I~~Ti~dY~~d~~~--~l~~~~~~~l~~~~~~~~v~~Yl~~l---~~---------kk 445 (566)
T PF06046_consen 390 -------TKKWYSG---EAVDTICATIEDYLQDFQH--YLRPPYFQELIEELHDRVVKEYLRAL---MK---------KK 445 (566)
T ss_dssp -------SGGGCTS----HHHHHHHHHHHHHHHHCC--CS-HHHHHHHHHHHHHHHHHHHHHGG---GG-----------
T ss_pred -------cCcCcCc---chHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHHH---HH---------hh
Confidence 2111111 7889999999999988765 79999999999999999999998742 11 22
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Q 008653 487 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALG 531 (558)
Q Consensus 487 LKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lg 531 (558)
++=+. ..+.++.--||..|++.+.+...+++
T Consensus 446 ~~~~~--------------~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 446 IKFKN--------------KEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp ---------------------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhccc--------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21000 01122234456678888888888887
No 13
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=67.03 E-value=42 Score=35.50 Aligned_cols=54 Identities=7% Similarity=0.152 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhH
Q 008653 36 IKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVA 89 (558)
Q Consensus 36 I~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~ 89 (558)
++.++..|...+.+.|.++.+.+|.+.+.++.+.|-.||+-.+.-+.|.+.|..
T Consensus 1 L~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~ 54 (331)
T PF08318_consen 1 LDEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCD 54 (331)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999999999999999999886644
No 14
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=64.70 E-value=34 Score=36.13 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHHHHhh
Q 008653 36 IKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVV 88 (558)
Q Consensus 36 I~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV 88 (558)
++.++..|...+.+.|-++.+.+|...+.+|.+.|-.||+-.+.-+.+.+.+.
T Consensus 1 L~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic 53 (324)
T smart00762 1 LDEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYIC 53 (324)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999887553
No 15
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.92 E-value=89 Score=32.31 Aligned_cols=69 Identities=9% Similarity=0.161 Sum_probs=58.6
Q ss_pred hccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhH
Q 008653 21 LPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVA 89 (558)
Q Consensus 21 ~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~ 89 (558)
..-+++.-+++|..+++.....+...|+..|.....+-|++.=...+.+|..||++..+-+-+-...+.
T Consensus 158 ~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~ 226 (291)
T PF10475_consen 158 EELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTS 226 (291)
T ss_pred HhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445677788999999999999999999999999988999999999999999999988776555444333
No 16
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=37.22 E-value=15 Score=39.94 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.5
Q ss_pred hchhHHHHHHhhccchhHHHH
Q 008653 204 AEAIYVEFMKQWNVGVYFSLR 224 (558)
Q Consensus 204 ~h~~y~~F~~rWNLpVYFQlR 224 (558)
++.++.+|.++||.|||-=+.
T Consensus 299 Ns~s~~eywR~WN~PVH~fl~ 319 (410)
T PLN03242 299 NASEVSEYWRLWNMPVHYWLV 319 (410)
T ss_pred ccCcHHHHHHHcchHHHHHHH
Confidence 577888999999999986554
No 17
>PLN02401 diacylglycerol o-acyltransferase
Probab=34.48 E-value=18 Score=39.80 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.5
Q ss_pred hchhHHHHHHhhccchhHHHH
Q 008653 204 AEAIYVEFMKQWNVGVYFSLR 224 (558)
Q Consensus 204 ~h~~y~~F~~rWNLpVYFQlR 224 (558)
++.++.+|.++||.||+-=+.
T Consensus 324 Ns~s~~eywR~WN~PVH~fL~ 344 (446)
T PLN02401 324 NAKTVEEYWRMWNMPVHKWMV 344 (446)
T ss_pred ccCcHHHHHHHcchHHHHHHH
Confidence 577888999999999986554
No 18
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.69 E-value=1.2e+02 Score=35.01 Aligned_cols=74 Identities=22% Similarity=0.199 Sum_probs=45.1
Q ss_pred HHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHhhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc
Q 008653 366 LVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE 440 (558)
Q Consensus 366 ~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~ 440 (558)
-+.+.|.+....|...+..++...++.+-..-.+..+++-+|-.+-|-|. ..-+..-+=.+++|+||-.|+++.
T Consensus 876 ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvkgt~-~a~~sva~dad~vl~plmdlldgn 949 (1283)
T KOG1011|consen 876 EAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVKGTG-LAKTSVAQDADAVLEPLMDLLDGN 949 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhcccc-cchhhcccchHHHHHHHHHHHhch
Confidence 33455555555566666666666555554444444455555555555554 234445556789999999999875
No 19
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.52 E-value=4.6e+02 Score=26.11 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008653 458 AATQITSRYHELAAELISVARKTESSLLKI 487 (558)
Q Consensus 458 v~~~vt~~Y~~~v~evL~sV~KtEeSL~RL 487 (558)
.+.++-+.|...+=|..-.+....++|.||
T Consensus 144 qL~e~Rk~Y~~aSLDyv~qi~~lq~~lDkl 173 (214)
T cd07609 144 QLFEARKAYLKASLDLVIAIPQLRLTLDKL 173 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777643
No 20
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.60 E-value=46 Score=21.05 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.9
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 008653 65 NCLRAYAAIDNTRNAEEIFCNTV 87 (558)
Q Consensus 65 ~cLr~Y~~ld~~~~aE~~~r~~v 87 (558)
..+++|...|+.++|+++|++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 46789999999999999999854
No 21
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=27.44 E-value=5e+02 Score=24.44 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHH--HHHHHHHHHHH
Q 008653 445 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK--ICMQLFLDIQE 522 (558)
Q Consensus 445 ~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dK--Ir~QL~LDv~~ 522 (558)
.++.|.+++++.. +...++.|. .-|..+|+ +.++++|+..+. + ..|.||. ..-++.--.+.
T Consensus 86 ~~T~E~R~~l~k~-~k~~~E~~k----~~iR~iR~--~~~~~lkk~~~~--~--------~~s~D~~~~~~~~iq~l~~~ 148 (165)
T PF01765_consen 86 PPTEERRKELVKQ-AKKIAEEAK----VSIRNIRR--DAMKKLKKLKKS--K--------EISEDDIKKLEKEIQKLTDK 148 (165)
T ss_dssp SSSHHHHHHHHHH-HHHHHHHHH----HHHHHHHH--HHHHHHHHHHHT--T--------SS-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHHHHHHHH----HHHHHHHH--HHHHHHHhhhcc--C--------CCCchhhHHHHHHHHHHHHH
Confidence 4566877776643 344445544 46777776 678888877651 1 1444444 55555555666
Q ss_pred HHHHHHh
Q 008653 523 YGRSLAA 529 (558)
Q Consensus 523 f~~~i~~ 529 (558)
|..++..
T Consensus 149 ~~~~id~ 155 (165)
T PF01765_consen 149 YIKKIDE 155 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 22
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=27.39 E-value=3.9e+02 Score=27.23 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=64.6
Q ss_pred HHHHhcChhhHHHHHHHHhhHHHHhhhCCCCCCccccCCCcchHHHH-HHHHHHHHHHhhHHHHHhhhhccCCCcccccc
Q 008653 69 AYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESD-YEQIKQCVEKDCKFLLDISSAENSGLHVFDFL 147 (558)
Q Consensus 69 ~Y~~ld~~~~aE~~~r~~vV~P~~~~ii~~~~~~~~~~~s~~gL~~i-y~~il~fv~~~~~~lleit~~~~~~~~~~dfl 147 (558)
+|..+|...+||+++.++.++ +... ..... .+-..=|-.+ .|.+++++.+.-. .. ..|.
T Consensus 14 a~r~lg~~~dAEDvvQE~flk-~~~~--~~~~~----~~~~awL~~Ia~n~~ld~lR~~~~--------~~---~~~~-- 73 (281)
T TIGR02957 14 AYRMLGSVADAEDIVQETFLR-WQEA--DRAQI----ENPKAYLTKVVTRRCIDVLRSARA--------RR---EVYV-- 73 (281)
T ss_pred HHHHhCCHhHHHHHHHHHHHH-HHhC--Ccccc----cCHHHHHHHHHHHHHHHHHHHhhh--------cc---cccC--
Confidence 456789999999999999999 6553 11111 1111122222 4555555443210 00 0010
Q ss_pred cccchHHHHHHHHhcCCccccCCCch-HHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhccchhHHHHHH
Q 008653 148 ANSILKEVLSAIQKGKPGAFSPGRPT-QFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQ 226 (558)
Q Consensus 148 ~nsvw~ev~~~l~~~l~~iFapG~Pd-~F~~nY~~t~~Fl~~lE~~c~S~~~v~~lR~h~~y~~F~~rWNLpVYFQlRfq 226 (558)
...++| ... -....|. ....+-.....+..-|+.+-+.+..+-.|| -+|.+-++
T Consensus 74 -~~~~~e-------~~~--~~~~~~~~~~~~~e~~~~~l~~~l~~L~~~~R~v~~L~---------------~~~g~s~~ 128 (281)
T TIGR02957 74 -GPWLPE-------PLL--TTSADPAESVELAESLSMAYLLLLERLSPLERAVFVLR---------------EVFDYPYE 128 (281)
T ss_pred -CCCCCc-------ccC--CCCCChHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH---------------HHcCCCHH
Confidence 111111 111 0112333 233333445667788888888888877665 36888899
Q ss_pred HHHHhHH
Q 008653 227 EIAGALD 233 (558)
Q Consensus 227 EIa~~lE 233 (558)
|||..|.
T Consensus 129 EIA~~lg 135 (281)
T TIGR02957 129 EIASIVG 135 (281)
T ss_pred HHHHHHC
Confidence 9998776
No 23
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=26.02 E-value=51 Score=26.24 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=28.2
Q ss_pred CCCcchHHHHHHHHHHHHHHhhHHHHHhhhhccCCCcccccccccchHHHHHHHHhc
Q 008653 106 GASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKG 162 (558)
Q Consensus 106 ~~s~~gL~~iy~~il~fv~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~ 162 (558)
..+..+|..+-|+++ ......-+|||++|.. ++...|.+.
T Consensus 25 ~~t~~~Ls~LvN~LL---------------~~~~~~vpfdF~i~~~--~lr~sL~~~ 64 (65)
T PF08154_consen 25 NITRKELSELVNQLL---------------DDEEEPVPFDFLINGE--ELRTSLEEH 64 (65)
T ss_pred CCCHHHHHHHHHHHh---------------ccCCCCCcEEEEECCE--EeechHHHh
Confidence 346689999999887 1223445899999995 666666554
No 24
>PF12854 PPR_1: PPR repeat
Probab=25.99 E-value=1e+02 Score=20.97 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 008653 59 NANVIYNCLRAYAAIDNTRNAEEIFCNT 86 (558)
Q Consensus 59 ~~~~L~~cLr~Y~~ld~~~~aE~~~r~~ 86 (558)
|.-.-...+.+|+.-|++.+|.++|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4444556788999999999999999874
No 25
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.95 E-value=88 Score=19.97 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 008653 65 NCLRAYAAIDNTRNAEEIFCNTV 87 (558)
Q Consensus 65 ~cLr~Y~~ld~~~~aE~~~r~~v 87 (558)
..+++|+.-|+..+|+++|++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 46788999999999999999853
No 26
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=24.41 E-value=2.9e+02 Score=25.85 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=47.2
Q ss_pred HHHHHHhhhhhccchhhhhccCCC--CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008653 394 VEKAVEDLRQLKGITATYRMTNKP--LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAA 471 (558)
Q Consensus 394 ~~~c~~~Lk~v~~Ip~~YR~Tnk~--~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~ 471 (558)
.++|...|.-++ -++-+|. +|-+.|-||++=|.....|+-+.+.+=++.. -.++..+.|...+.
T Consensus 46 ~~~~~~aln~~~-----~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK---------~~e~akdyfkRKve 111 (153)
T KOG3048|consen 46 YEESIAALNDVQ-----AANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEK---------DAEDAKDYFKRKVE 111 (153)
T ss_pred HHHHHHHHhhcc-----cCCCCCeEEEecccceeccceeccccceeEeccCceEEee---------chHHHHHHHHHHHH
Confidence 345777666322 2455777 8999999999999999999976655412321 11223333333443
Q ss_pred HHHHHHHHhHHHHHH
Q 008653 472 ELISVARKTESSLLK 486 (558)
Q Consensus 472 evL~sV~KtEeSL~R 486 (558)
=+-..+.+.|.-++.
T Consensus 112 ~l~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 112 YLTKQIEQIEGILKE 126 (153)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455566666654
No 27
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=23.02 E-value=2.4e+02 Score=26.56 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=10.6
Q ss_pred HHHHHHhhhh-hccchhhh
Q 008653 394 VEKAVEDLRQ-LKGITATY 411 (558)
Q Consensus 394 ~~~c~~~Lk~-v~~Ip~~Y 411 (558)
.+.|...|+. +.|+||+=
T Consensus 16 L~~Si~~L~~~~~D~pRL~ 34 (153)
T PF08287_consen 16 LQSSIETLDSGTSDFPRLT 34 (153)
T ss_pred HHHHHHHHHhcCcccHHHH
Confidence 3456666765 55666643
No 28
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=22.76 E-value=3e+02 Score=22.94 Aligned_cols=49 Identities=24% Similarity=0.509 Sum_probs=30.6
Q ss_pred HHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHHH---Hh-------hHHHHhhhCCC
Q 008653 43 LDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCN---TV-------VAPLMQKIIPH 98 (558)
Q Consensus 43 L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~---~v-------V~P~~~~ii~~ 98 (558)
|+..|..+| .....+...|||-.|..= ++.+.+++. ++ +-|++.++|+.
T Consensus 8 lh~~l~~lL----s~~Er~~f~h~Ln~Y~~~---RnV~~Lv~sL~~vLd~P~KrqllplLr~vIP~ 66 (78)
T cd07356 8 LHNALTKLL----SEAEREEFIHCLNDYHAK---RNVYDLVQSLKVVLDTPEKRQLLPLLRLVIPR 66 (78)
T ss_pred HHHHHHHHc----cHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhCCHhHhHHHHHHHHHccc
Confidence 445555444 334567888999998753 444444443 22 56899999875
No 29
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.43 E-value=1.4e+02 Score=27.78 Aligned_cols=77 Identities=14% Similarity=0.306 Sum_probs=45.0
Q ss_pred HHHHHhhhhhccchhhhhccCCC--CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008653 395 EKAVEDLRQLKGITATYRMTNKP--LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAE 472 (558)
Q Consensus 395 ~~c~~~Lk~v~~Ip~~YR~Tnk~--~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~e 472 (558)
..|.+.|+.+. ++++ +|=.+|-||+.-+.+-..++-+.+.+-++.. -+++..+.|...+++
T Consensus 37 ~~~ie~L~~l~--------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk---------~~~eA~~~~~~ri~~ 99 (144)
T PRK14011 37 LKSIESMEGLK--------TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEK---------DVSEVIEDFKKSVEE 99 (144)
T ss_pred HHHHHHHHccC--------CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEe---------cHHHHHHHHHHHHHH
Confidence 45666666433 3566 8999999999988887777655444312211 123333455555555
Q ss_pred HHHHHHHhHHHHHHHH
Q 008653 473 LISVARKTESSLLKIR 488 (558)
Q Consensus 473 vL~sV~KtEeSL~RLK 488 (558)
+=.+.+|+++.|.++.
T Consensus 100 l~~~~~~l~~~i~~~~ 115 (144)
T PRK14011 100 LDKTKKEGNKKIEELN 115 (144)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 30
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=21.72 E-value=1.5e+02 Score=26.54 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhccc
Q 008653 459 ATQITSRYHELAAELISVARK----TESSLLKIRQGAQ 492 (558)
Q Consensus 459 ~~~vt~~Y~~~v~evL~sV~K----tEeSL~RLKk~r~ 492 (558)
+.++...|.+.+.|.-.-+.| -++=|+++||+..
T Consensus 21 L~d~L~EFd~Vvedf~sP~~~r~f~Y~ehL~~mKRrs~ 58 (121)
T PF15151_consen 21 LSDLLCEFDAVVEDFSSPAEKRHFRYDEHLEEMKRRSS 58 (121)
T ss_pred HHHHHHHHHHHHHHhcCchhhccchHHHHHHHHHHhcC
Confidence 566667777777776555566 4889999998753
No 31
>PF14214 Helitron_like_N: Helitron helicase-like domain at N-terminus
Probab=21.62 E-value=4.3e+02 Score=25.02 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=38.8
Q ss_pred CCCcchHHHHHHHHHHHHHHhhHHHHHhhhhccCCCcccccccccchHHHHHHHHhcCCccccCCCchH----HHHHHHH
Q 008653 106 GASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQ----FLRNYKS 181 (558)
Q Consensus 106 ~~s~~gL~~iy~~il~fv~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~----F~~nY~~ 181 (558)
.+++.--...|+.+...+...-.|=+-+| +. .|.-|+||...|.. ++-...=||+. ||.+..+
T Consensus 82 ~Gs~~y~~~~~~dl~a~~~~~G~P~~FiT---------~s--~~~~w~ei~~~l~~--~~~~~~d~P~~~ar~F~~k~~~ 148 (184)
T PF14214_consen 82 RGSPAYWQQRRQDLMAMVRQFGKPTLFIT---------FS--CNPQWPEIQQALAK--PGQNWSDNPDIVARFFHIKFQA 148 (184)
T ss_pred CCcHHHHHHHHHHHHHHHhccCCCcEEEE---------Ec--CccccHHHHHHHHh--ccCCcccCcHHHHHHHHHHHHH
Confidence 44555566667777765554322222121 22 37899999999874 33333348876 6666655
Q ss_pred HHHHH
Q 008653 182 SLDFL 186 (558)
Q Consensus 182 t~~Fl 186 (558)
-++.+
T Consensus 149 f~~~~ 153 (184)
T PF14214_consen 149 FFKDV 153 (184)
T ss_pred HHHHH
Confidence 55443
No 32
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=21.42 E-value=2.9e+02 Score=27.25 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=40.9
Q ss_pred cchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 008653 424 PYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQ 492 (558)
Q Consensus 424 ~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~ 492 (558)
.+-..++.||....+.+. +++....++|....+.--.+.+|.+.-++|++|+++
T Consensus 80 ~~~~~li~pLe~~~e~d~---------------k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~ 133 (219)
T PF08397_consen 80 AFHSELIQPLEKKLEEDK---------------KYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSR 133 (219)
T ss_dssp HHHHHTHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345567888877765442 345567788888888888899999999999998876
No 33
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=21.12 E-value=5.9e+02 Score=22.58 Aligned_cols=79 Identities=19% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhc------------------CCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHh
Q 008653 32 MEKRIKSASLLLDASLGHCFVHGLEH------------------QNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQ 93 (558)
Q Consensus 32 ~~~RI~~i~~~L~~~L~~~f~~~l~~------------------~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~ 93 (558)
+.++...++....+.+..+....+.. -|...-..-+++|...|+...|-+.+++. .+=+.+
T Consensus 50 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~-~~~l~~ 128 (146)
T PF03704_consen 50 VEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY-RRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHHHHH
Confidence 44455555555555555544433322 25566777799999999999999999983 232222
Q ss_pred hhCCCCCCccccCCCcchHHHHHHHHH
Q 008653 94 KIIPHGPSEALAGASGDELESDYEQIK 120 (558)
Q Consensus 94 ~ii~~~~~~~~~~~s~~gL~~iy~~il 120 (558)
+. ...| +..+..+|.+|+
T Consensus 129 el-g~~P--------s~~~~~l~~~il 146 (146)
T PF03704_consen 129 EL-GIEP--------SPETRALYREIL 146 (146)
T ss_dssp HH-S------------HHHHHHHHHHH
T ss_pred Hh-CcCc--------CHHHHHHHHHhC
Confidence 22 2111 346788888775
No 34
>PHA00442 host recBCD nuclease inhibitor
Probab=21.11 E-value=1.5e+02 Score=23.04 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHH----HHHHHHHHhcCCCCCCCccHHHHHHhcccccc
Q 008653 507 SDTDKICMQLFLDI----QEYGRSLAALGVQAADIPPYRSLWQCVAPSDR 552 (558)
Q Consensus 507 SD~dKIr~QL~LDv----~~f~~~i~~lgv~~~~i~~~~~L~~~V~~~~~ 552 (558)
+-+.==-+|.|+|- ..|.+.+++.| +++++.|.+..++|+...+
T Consensus 11 tRd~wnd~q~yidsLek~~~~L~~Lea~G--VDNW~Gy~eA~emv~~edd 58 (59)
T PHA00442 11 TRDAWNDMQGYIDSLEKDNEFLKALRACG--VDNWDGYMDAVEMVAEEDD 58 (59)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHcC--CcchhhHHHHHHHHhhhcc
Confidence 33333345666653 45677777788 5689999999999987653
No 35
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=20.64 E-value=99 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.7
Q ss_pred HHHHHHHhcChhhHHHHHHHHh
Q 008653 66 CLRAYAAIDNTRNAEEIFCNTV 87 (558)
Q Consensus 66 cLr~Y~~ld~~~~aE~~~r~~v 87 (558)
-=++|...|+..+|++++++.+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3468899999999999999865
Done!