Query 008653
Match_columns 558
No_of_seqs 137 out of 160
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 96.7 0.43 1.5E-05 48.9 24.3 107 409-548 204-314 (325)
2 3n1e_A Vacuolar protein sortin 94.3 1.2 4.2E-05 40.0 14.5 123 378-544 17-140 (141)
3 3swh_A MUNC13-1, protein UNC-1 86.5 6.7 0.00023 40.3 12.8 72 260-346 63-134 (341)
4 2fji_1 Exocyst complex compone 80.1 59 0.002 33.6 18.6 160 327-532 136-295 (399)
5 4dnd_A Syntaxin-10, SYN10; str 24.3 2.1E+02 0.007 24.9 7.2 62 462-530 25-86 (130)
6 2akf_A Coronin-1A; coiled coil 23.0 65 0.0022 20.8 2.6 18 28-45 14-31 (32)
7 3swh_A MUNC13-1, protein UNC-1 21.0 4.8E+02 0.016 26.3 10.3 94 113-211 211-317 (341)
8 3clj_A Protein NRD1; CTD-inter 19.7 1E+02 0.0036 27.8 4.4 65 371-435 6-74 (157)
9 4fye_A SIDF, inhibitor of grow 17.7 2.2E+02 0.0074 29.2 6.6 82 402-490 49-158 (761)
10 4atg_A TAF6; transcription, TF 16.4 5.1E+02 0.018 24.0 8.6 92 375-473 35-128 (196)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.72 E-value=0.43 Score=48.91 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=74.7
Q ss_pred hhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008653 409 ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR 488 (558)
Q Consensus 409 ~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLK 488 (558)
.-|=|+-.++|++||.|+..++.=|+.-.. .-. .||.++++.+..+++++++.+..+. |. ++..||+
T Consensus 204 a~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~--~LP~~v~~~~~~~a~~his~~l~~~----Ll-----~~~vk~i- 270 (325)
T 2a2f_X 204 SAYDWLLVEPPGIASAFITDMISYLKSTFD-SFA--FKLPHIAQAACRRTFEHIAEKIYSI----MY-----DEDVKQI- 270 (325)
T ss_dssp CCTTCC----CCSCCHHHHHHHHHHHHHHH-TTT--TTSHHHHHHHHHHHHHHHHHHHHHH----HT-----C-------
T ss_pred cccCCCCCCCCCCccHHHHHHHHHHHHHHH-HHH--cCCHHHHHHHHHHHHHHHHHHHHHH----hc-----Ccchhhc-
Confidence 447799899999999999999999998887 333 7999999999999999999999884 32 2334332
Q ss_pred hcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC----CCCccHHHHHHhcc
Q 008653 489 QGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQA----ADIPPYRSLWQCVA 548 (558)
Q Consensus 489 k~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lgv~~----~~i~~~~~L~~~V~ 548 (558)
.. + | =.|+-+||.++..-+.+.+++. .=-..|.+|.++|.
T Consensus 271 --n~---~--------a-------v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~ 314 (325)
T 2a2f_X 271 --ST---G--------A-------LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLD 314 (325)
T ss_dssp --CC---T--------T-------HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHH
T ss_pred --CH---H--------H-------HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence 11 1 1 2589999999999998866542 22267777777663
No 2
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=94.29 E-value=1.2 Score=39.98 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=79.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHhhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHH
Q 008653 378 LSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLD 457 (558)
Q Consensus 378 L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~ 457 (558)
...+...|.+.+|+++.++...+|+ -|-.| +| -||+|+.++.+-+.++.+.-.. .||++.++.+...
T Consensus 17 y~eH~~eI~~KLv~Im~~r~~~~l~---------~Wd~k-~p-vpS~~m~tl~Ke~~kLH~~Ls~--~LP~~~v~~Im~~ 83 (141)
T 3n1e_A 17 YHDHIAEISAKLVAIMDSLFDKLLS---------KYEVK-AP-VPSPCFRNICKQMTKMHEAIFD--LLPEEQTQMLFLR 83 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCC-SS-SSCHHHHHHHHHHHHHHHHHTT--TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HhccC-CC-CCCHHHHHHHHHHHHHHHHHHh--hCCHHHHHHHHHH
Confidence 3455566667778888887777765 26655 34 7999999999999999987655 8999887666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCCCCC
Q 008653 458 AATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL-GVQAAD 536 (558)
Q Consensus 458 v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~l-gv~~~~ 536 (558)
| ...|...-. +.+.++- - -+|..|=+.=+.-||++|.+.+++| |+.-.+
T Consensus 84 V----f~~fk~~l~----------~~~~~~~--------i--------~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d~~ 133 (141)
T 3n1e_A 84 I----NASYKLHLK----------KQLSHLN--------V--------INDGGPQNGLVTADVAFYTGNLQALKGLKDLD 133 (141)
T ss_dssp H----HHHHHHHHH----------HHHHHTT--------C--------CSSSSHHHHHHHHHHHHHHHHHHTSTTCTTCC
T ss_pred H----HHHHHHHHH----------HHHHHcC--------C--------CCCCcccchHHHHHHHHHHHHhcccCCCCccc
Confidence 5 455655322 2343321 0 1122333323678999999999999 554444
Q ss_pred CccHHHHH
Q 008653 537 IPPYRSLW 544 (558)
Q Consensus 537 i~~~~~L~ 544 (558)
.. +.++|
T Consensus 134 l~-~~~iw 140 (141)
T 3n1e_A 134 LN-MAEIW 140 (141)
T ss_dssp CC-GGGGG
T ss_pred cc-HHhhc
Confidence 43 44444
No 3
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=86.48 E-value=6.7 Score=40.26 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHH
Q 008653 260 KQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINC 339 (558)
Q Consensus 260 ~~s~~l~~~l~~cWs~~VfL~~L~~rFwkLtLQllsRy~~Wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~ 339 (558)
.+....|..| =|.|..-...+.-||-+-.-..+..|+.-+.......... ...+.++.++.+++.
T Consensus 63 ~Q~~~~~~~L--~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~-------------e~~~~~Cv~lNNie~ 127 (341)
T 3swh_A 63 NQSFEIIKKL--ECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSK-------------EKEKVPCILMNNTQQ 127 (341)
T ss_dssp HHHHHHHHHS--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-------------TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------hcccchhhhcccHHH
Confidence 4445555555 4888877777888899999999999998887665442210 012458888899988
Q ss_pred HHHHhhh
Q 008653 340 LATEVSG 346 (558)
Q Consensus 340 L~~~i~~ 346 (558)
+...+..
T Consensus 128 lR~~L~~ 134 (341)
T 3swh_A 128 LRVQLEK 134 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777666
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=80.06 E-value=59 Score=33.60 Aligned_cols=160 Identities=9% Similarity=0.034 Sum_probs=88.5
Q ss_pred hhhHHHHHHhHHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHhhhhhcc
Q 008653 327 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 406 (558)
Q Consensus 327 ~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~ 406 (558)
.+.+++++.|+....+.+.. +.+.+.+. ...+....+...+.+..+.+..+. +..++.|.+.....|++.
T Consensus 136 ~e~liA~~Nn~~~~~e~~~~-l~~~~~~~---~~~~~~~~~~~~l~~~~~~f~~l~----~~~~~~L~~~if~dl~p~-- 205 (399)
T 2fji_1 136 VEYLIAVSNDQMKAADYAVA-ISSKYGKL---VSKVYEKQITNHLEGTLDGFAEVA----QCSSLGLITLMFDDLRKP-- 205 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---SCHHHHHHHHHHHHTTHHHHHHHH----HHHHHHHHHHHHHTTHHH--
T ss_pred HHhhhhhhccHHHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH--
Confidence 57799999999877665555 33333322 222222222333444333333322 223333333333333331
Q ss_pred chhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008653 407 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 486 (558)
Q Consensus 407 Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~R 486 (558)
++..| |++=.- +.+|..|+.-+..|....+. ++.+...+.++..+.+.+..+|... |.+
T Consensus 206 ~~~lf--t~~W~~---~~~v~~i~~ti~dy~~d~~~--~L~~~~~~~l~~~~~~~~v~~Yl~~--------------l~~ 264 (399)
T 2fji_1 206 YQEIF--SKTWYM---GSQAQQIADTLDEYLLDIKP--QMNSVLFVNFIDNVIGETIIKFLTA--------------LSF 264 (399)
T ss_dssp HTTTT--SGGGTT---CCHHHHHHHHHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHHG--------------GGG
T ss_pred HHHhC--CchhcC---CcHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHH--------------Hhc
Confidence 11111 111111 11899999999999988866 8999999899999999988888762 221
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Q 008653 487 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGV 532 (558)
Q Consensus 487 LKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lgv 532 (558)
|.+=+ + . ....-.||..|++.+.....+++-
T Consensus 265 -~~~~~------~------~--~~~~~~~l~~D~~~l~~~f~~~~~ 295 (399)
T 2fji_1 265 -EHSFK------N------K--NNKFLEAMKRDFEIFYQLFVKVLD 295 (399)
T ss_dssp -CCCCC------C------G--GGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCC------c------h--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 10000 0 0 234556777777777777777764
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.27 E-value=2.1e+02 Score=24.95 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 008653 462 ITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 530 (558)
Q Consensus 462 vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~l 530 (558)
..+=|+....||..++.+++.-..+-.+.+.. ++++ + --+-+-.+-+|.-.++....+++.|
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~--~~~~-s----~~E~~~~~~EL~~~l~sie~dLeDL 86 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQE--SAAV-G----REELDWTTNELRNGLRSIEWDLEDL 86 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-c----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999888776652 1111 0 1133446666666666666555544
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.04 E-value=65 Score=20.81 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHHHHHHH
Q 008653 28 FIENMEKRIKSASLLLDA 45 (558)
Q Consensus 28 ~~~~~~~RI~~i~~~L~~ 45 (558)
.++++|+|++.++.+.+.
T Consensus 14 ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 14 IVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 568899999999988775
No 7
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=21.03 E-value=4.8e+02 Score=26.32 Aligned_cols=94 Identities=10% Similarity=0.098 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhhccCCCcccccccccchHHHHHHHHhcC--Cccc-----------cCCCchHHHHHH
Q 008653 113 ESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGK--PGAF-----------SPGRPTQFLRNY 179 (558)
Q Consensus 113 ~~iy~~il~fv~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l--~~iF-----------apG~Pd~F~~nY 179 (558)
...-.-+++|++..+..+-+..... .|.=+...+|..+...+..-+ |..+ ..+-|..|+.+.
T Consensus 211 ~~ai~PLm~yLd~~L~~l~~~L~~~-----~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l 285 (341)
T 3swh_A 211 DNVLQPIMDLLDSNLTLFAKICEKT-----VLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVV 285 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHH
Confidence 3444556777777666555544332 255667789999999988843 4433 223456788888
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHhhchhHHHH
Q 008653 180 KSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEF 211 (558)
Q Consensus 180 ~~t~~Fl~~lE~~c~S~~~v~~lR~h~~y~~F 211 (558)
..+++.|..+=-..|..-....+-.+|.|...
T Consensus 286 ~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l 317 (341)
T 3swh_A 286 ELALDTIKQYFHAGGVGLKKTFLEKSPDLQSL 317 (341)
T ss_dssp HHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHccChhHHHH
Confidence 88888776664444444334555556677654
No 8
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=19.70 E-value=1e+02 Score=27.85 Aligned_cols=65 Identities=8% Similarity=0.028 Sum_probs=44.6
Q ss_pred HHhhchhhhccchhHHHHHHHHHHHHHHHhhhhhccc-hhhhhccCCCCCCC--C-CcchHhhhHhHHH
Q 008653 371 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGI-TATYRMTNKPLPVR--H-SPYVSGVLRPLKT 435 (558)
Q Consensus 371 l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~I-p~~YR~Tnk~~Pt~--~-S~YV~~il~PL~~ 435 (558)
+...+++|.++.|.++..-+..|+.-|.++.+.-+-| ...|+.-.|.+|+. | -+-|++|++-.+.
T Consensus 6 f~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~ 74 (157)
T 3clj_A 6 FVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLD 74 (157)
T ss_dssp HHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHH
Confidence 3444455666668999999999999999999887766 66777665545543 2 3445677766543
No 9
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=17.66 E-value=2.2e+02 Score=29.18 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=58.5
Q ss_pred hhhccchhhhhccCCCCCCCC------CcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q 008653 402 RQLKGITATYRMTNKPLPVRH------SPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAA---- 471 (558)
Q Consensus 402 k~v~~Ip~~YR~Tnk~~Pt~~------S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~---- 471 (558)
++|--|.++|-.-.||+...| -.|+++++..-+++.+..+.+ .. .+-...+++..+.|..-++
T Consensus 49 kqvvvvnsqydkhgrpvtgqpdviqeannyidnlvaaakslidkdkkg---ek----dlrknaidemaktfkksisetip 121 (761)
T 4fye_A 49 KQVVVVNSQYDKHGRPVTGQPDVIQEANNYIDNLVAAAKSLIDKDKKG---EK----DLRKNAIDEMAKTFKKSISETIP 121 (761)
T ss_dssp CEEEEEECCBCTTSCBCSSCCBHHHHHHHHHHHHHHHHHHHHHHSSSS---CH----HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEeccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccccc---hh----hHHHhHHHHHHHHHHhhhhhhCC
Confidence 566678899999999988877 579999999999999876553 22 2334455556666655444
Q ss_pred ------------------HHHHHHHHhHHHHHHHHhc
Q 008653 472 ------------------ELISVARKTESSLLKIRQG 490 (558)
Q Consensus 472 ------------------evL~sV~KtEeSL~RLKk~ 490 (558)
|.|....|.|-||..+-+.
T Consensus 122 sdkakadlfsskkssankdfleqlakvegslqqftqa 158 (761)
T 4fye_A 122 SDKAKADLFSSKKSSANKDFLEQLAKVEGSLQQFTQA 158 (761)
T ss_dssp TTTSBCCTTSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccchHHHHHHHHhhhhHHHHHHH
Confidence 4566677788888777654
No 10
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=16.37 E-value=5.1e+02 Score=24.01 Aligned_cols=92 Identities=22% Similarity=0.340 Sum_probs=61.6
Q ss_pred chhhhccchhHHHHHHHHHHHHHHHhhhhhccchhhhh--ccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHH
Q 008653 375 GKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYR--MTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKN 452 (558)
Q Consensus 375 ~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR--~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~ 452 (558)
-..|..++|-+...|.+.+... ...+..+..+-+..| .-|+.. .--+|+.+++-|+-+.+-.. .+.+...+
T Consensus 35 D~gL~~LlPyf~~fI~~~v~~n-l~~l~~L~~lm~~~~ALl~N~~l--~lepYlH~LipsvLtCll~k----~l~~~~LR 107 (196)
T 4atg_A 35 ESGLQQLVPYFIQHISELILKS-FKEAEVLKTCIALYFSLIKNKHV--FIDPYLHQILPSLLTCVIGK----SIVDDDVR 107 (196)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHCTTC--CCGGGHHHHHHHHHHHHHCT----TCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHHHHHHhc----ccCHHHHH
Confidence 3446677888888887776652 223333333333333 235544 55789999999999998754 45554788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008653 453 ELLLDAATQITSRYHELAAEL 473 (558)
Q Consensus 453 ~~~~~v~~~vt~~Y~~~v~ev 473 (558)
+....++..++.+|-..-..+
T Consensus 108 d~AA~lL~~I~~~~~~~y~~L 128 (196)
T 4atg_A 108 KMSADIVKYIYDTYSRSYKTL 128 (196)
T ss_dssp HHHHHHHHHHHHHHTTTSTTH
T ss_pred HHHHHHHHHHHHHhCccCchH
Confidence 999999999999997644444
Done!