Query 008653
Match_columns 558
No_of_seqs 137 out of 160
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvfa_ a.47.2.1 (A:) Syntaxin 36.6 40 0.0029 26.3 6.8 58 466-530 4-61 (106)
2 d1nvpb_ a.32.1.1 (B:) Large ch 25.8 53 0.0039 21.6 4.6 29 462-490 2-37 (43)
3 d1is1a_ d.67.3.1 (A:) Ribosome 21.4 2.2E+02 0.016 23.9 9.8 108 400-529 50-173 (185)
4 d1dd5a_ d.67.3.1 (A:) Ribosome 20.9 2E+02 0.015 24.2 9.1 67 445-528 103-171 (184)
5 d1gzsb_ a.168.1.1 (B:) GEF dom 20.4 25 0.0018 29.2 2.5 32 200-231 111-159 (165)
6 d1ek8a_ d.67.3.1 (A:) Ribosome 18.8 2.4E+02 0.017 23.7 9.2 68 445-529 104-173 (185)
7 d1wqga1 d.67.3.1 (A:2-184) Rib 18.5 1.9E+02 0.014 24.4 8.3 68 445-529 103-172 (183)
8 d1y2oa1 a.238.1.3 (A:1-248) BA 18.1 2.5E+02 0.018 24.0 9.6 53 425-492 97-149 (248)
9 d1yyva1 a.4.5.69 (A:9-122) Put 14.8 18 0.0013 28.9 0.3 34 191-233 10-48 (114)
10 d1or7a2 a.177.1.1 (A:-1-111) S 11.9 1.4E+02 0.01 22.4 5.1 43 49-92 10-61 (113)
No 1
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.61 E-value=40 Score=26.26 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 008653 466 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 530 (558)
Q Consensus 466 Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~l 530 (558)
|+....||..++.+|+.-+++..+.+.. ++++ + ...-+-.+-+|.-.+.....+++.|
T Consensus 4 F~~v~~EVq~s~~~~~~l~~~w~~~~~~--~~~~-~----~~e~~~~~~eL~~~l~siewdL~dL 61 (106)
T d1lvfa_ 4 FFVVKGEVQKAVNTAQGLFQRWTELLQG--PSAA-T----REEIDWTTNELRNNLRSIEWDLEDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--TTSC-C----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCC-C----cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8888999999999999999988877651 1111 0 0122346777776666555555443
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.82 E-value=53 Score=21.62 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-------HHHHHHHHhc
Q 008653 462 ITSRYHELAAELISVARKT-------ESSLLKIRQG 490 (558)
Q Consensus 462 vt~~Y~~~v~evL~sV~Kt-------EeSL~RLKk~ 490 (558)
|.+-|...+.||+.+||.- |..|..||+.
T Consensus 2 V~kvY~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~ 37 (43)
T d1nvpb_ 2 VPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTL 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4455667777777776642 4566666654
No 3
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=21.37 E-value=2.2e+02 Score=23.90 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=55.1
Q ss_pred hhhhhccch----hhhhccCCCCCCCCCcchHhhhHhHHHHHhc-------ccc---ccCCCHHHHHHHHHHHHHHHHHH
Q 008653 400 DLRQLKGIT----ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEG-------ERA---MTYLTPEAKNELLLDAATQITSR 465 (558)
Q Consensus 400 ~Lk~v~~Ip----~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~-------~~~---~~~l~~e~~~~~~~~v~~~vt~~ 465 (558)
+|+++..|. ++.--| |-.++. |..|.+-+..=.-+ ..- -+.++.|.++++.. .+...++.
T Consensus 50 pL~~lA~Is~~~~~~l~I~----p~D~~~-v~~IekAI~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK-~~k~~~E~ 123 (185)
T d1is1a_ 50 PLNQVANVVAEDARTLAIT----VFDKEL-TQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVK-IVRGEAEG 123 (185)
T ss_dssp EGGGTEEEEEEETTEEEEE----ESSTTT-HHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHhhhccCCCceEEEE----ecccch-HHHHHHHHHhcccccccccCCceeeecCCCCcHHHHHHHHH-HHHHHHHH
Confidence 566666652 222222 555443 66666666533211 100 02567787766663 34444444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHHHHHHHHh
Q 008653 466 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQEYGRSLAA 529 (558)
Q Consensus 466 Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~Q--L~LDv~~f~~~i~~ 529 (558)
+.. -+..+|+ +..+.+|+..+ ++++|.||.=++| +.-=.+.|...+++
T Consensus 124 akv----~iRniRr--~~~~~ikk~~k----------~~~iseD~~k~~~~~iq~ltd~~~~~id~ 173 (185)
T d1is1a_ 124 GRV----AVRNIRR--DANNDLKALLK----------DKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HHH----HHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHH--HHHHHHHhhhc----------cCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5666664 55666666554 1126666665544 33335556666543
No 4
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=20.93 E-value=2e+02 Score=24.19 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHH--HHHH
Q 008653 445 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFL--DIQE 522 (558)
Q Consensus 445 ~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~L--Dv~~ 522 (558)
.++.|.+++++ +.+...++.+.. -+..+|+ +.++++|+.++. +++|.||.=++|-.+ =.+.
T Consensus 103 ~lT~E~R~elv-K~~k~~~E~aKv----~iR~iR~--~~~~~lk~~~k~----------~~iseD~~k~~~~~iq~ltd~ 165 (184)
T d1dd5a_ 103 SPTTEQREKWV-KKAKEIVEEGKI----AIRNIRR--EILKKIKEDQKE----------GLIPEDDAKRLENEIQKLTDE 165 (184)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHH----------TSSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHhhcc----------CCCChhHHHHHHHHHHHHHHH
Confidence 56778776666 344455555544 5666664 567777776651 136777776655332 2344
Q ss_pred HHHHHH
Q 008653 523 YGRSLA 528 (558)
Q Consensus 523 f~~~i~ 528 (558)
|...+.
T Consensus 166 ~~~~id 171 (184)
T d1dd5a_ 166 FIEKLD 171 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 5
>d1gzsb_ a.168.1.1 (B:) GEF domain of SopE toxin {Salmonella typhimurium [TaxId: 90371]}
Probab=20.37 E-value=25 Score=29.22 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=25.5
Q ss_pred HHHhhchhHHHHH-----------------HhhccchhHHHHHHHHHHh
Q 008653 200 AKFRAEAIYVEFM-----------------KQWNVGVYFSLRFQEIAGA 231 (558)
Q Consensus 200 ~~lR~h~~y~~F~-----------------~rWNLpVYFQlRfqEIa~~ 231 (558)
.+|+++++|.+|+ .+|..|.=||++.+.|+..
T Consensus 111 h~~~n~~qq~~fk~YArq~~m~lVap~~~e~~~~tp~~F~~tve~i~~~ 159 (165)
T d1gzsb_ 111 RMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANK 159 (165)
T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHGGGGTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHhhh
Confidence 4677778887776 6899999999998888753
No 6
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=18.79 E-value=2.4e+02 Score=23.68 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHH
Q 008653 445 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQE 522 (558)
Q Consensus 445 ~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~Q--L~LDv~~ 522 (558)
.++.|.+++++ +.+...++.+ +.-+..+|+ +..+.+|+..+. +++|.||.=++| +.-=.+.
T Consensus 104 ~lT~E~R~elv-K~~k~~~E~~----kv~iR~iRr--~~~~~ik~~~k~----------~~iseD~~k~~~~~iq~ltd~ 166 (185)
T d1ek8a_ 104 PLTEERRKDLT-KIVRGEAEQA----RVAVRNVRR--DANDKVKALLKD----------KEISEDDDRRSQDDVQKLTDA 166 (185)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHH----------SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHHHH----HHHHHHHHH--HHHHHHHhhccc----------CCCChhHHHHHHHHHHHHHHH
Confidence 56778887775 4444444444 445566653 556666655441 126667665554 3333556
Q ss_pred HHHHHHh
Q 008653 523 YGRSLAA 529 (558)
Q Consensus 523 f~~~i~~ 529 (558)
|..++.+
T Consensus 167 ~~~~id~ 173 (185)
T d1ek8a_ 167 AIKKIEA 173 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 7
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.53 E-value=1.9e+02 Score=24.40 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHH--HHH
Q 008653 445 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLD--IQE 522 (558)
Q Consensus 445 ~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LD--v~~ 522 (558)
.++.|.+++++. .+...++.+. .-+..+|. +..+++|+.++ ++.+|.||.=++|-.++ .+.
T Consensus 103 ~lT~E~R~elvK-~ak~~~E~aK----v~iRniR~--~~~~~lk~~~k----------~~~iseD~~~~~~~~iq~ltd~ 165 (183)
T d1wqga1 103 QLTEERRRELVK-QAKHKGEEAK----VSVRNIRR--KAMEELHRIRK----------EGEAGEDEVGRAEKDLDKTTHQ 165 (183)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHHH----HHHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHHHHHH----HHHHHHHH--HHHHHHHHhcc----------cCCCChhHHHHHHHHHHHHHHH
Confidence 567787766663 3444444444 45666663 56666666655 11267777766553332 455
Q ss_pred HHHHHHh
Q 008653 523 YGRSLAA 529 (558)
Q Consensus 523 f~~~i~~ 529 (558)
|...+++
T Consensus 166 ~~~~id~ 172 (183)
T d1wqga1 166 YVTQIDE 172 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 8
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.10 E-value=2.5e+02 Score=23.95 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=37.6
Q ss_pred chHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 008653 425 YVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQ 492 (558)
Q Consensus 425 YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLKk~r~ 492 (558)
...+++.||.+|++++.. .+.+.-++|....++.-...+|....++|++++++
T Consensus 97 ~~~~~i~PL~~~~~~d~k---------------~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~ 149 (248)
T d1y2oa1 97 FHNELLTQLEQKVELDSR---------------YLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQ 149 (248)
T ss_dssp HHHTTHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345799999999975522 23344566666666666788899999999887765
No 9
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=14.81 E-value=18 Score=28.86 Aligned_cols=34 Identities=26% Similarity=0.658 Sum_probs=26.1
Q ss_pred hhCCCHHHHHHHhhchhHHHHHHhhccchhHHH-----HHHHHHHhHH
Q 008653 191 GYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSL-----RFQEIAGALD 233 (558)
Q Consensus 191 ~~c~S~~~v~~lR~h~~y~~F~~rWNLpVYFQl-----RfqEIa~~lE 233 (558)
..||-..++..+ -.||.+.|...| ||.||...++
T Consensus 10 ~~Cpv~~~l~~i---------g~kW~l~Il~~L~~g~~RF~el~~~l~ 48 (114)
T d1yyva1 10 EQCPSREVLKHV---------TSRWGVLILVALRDGTHRFSDLRRKMG 48 (114)
T ss_dssp TTCTHHHHHHHH---------HSHHHHHHHHHGGGCCEEHHHHHHHST
T ss_pred CCCCHHHHHHHH---------cCCCHHHHHHHHhcCCCCHHHHHHHcc
Confidence 458866666554 499999999887 7999887765
No 10
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=11.86 E-value=1.4e+02 Score=22.35 Aligned_cols=43 Identities=5% Similarity=0.174 Sum_probs=27.8
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHH---------HhcChhhHHHHHHHHhhHHHH
Q 008653 49 HCFVHGLEHQNANVIYNCLRAYA---------AIDNTRNAEEIFCNTVVAPLM 92 (558)
Q Consensus 49 ~~f~~~l~~~~~~~L~~cLr~Y~---------~ld~~~~aE~~~r~~vV~P~~ 92 (558)
..++..++.+|..++....+.|. .++. .+||+++-++.++=+-
T Consensus 10 ~~Li~~~~~Gd~~Af~~l~~~y~~~l~~~~~~~~~~-~daeDl~Qe~~l~~~~ 61 (113)
T d1or7a2 10 QVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 61 (113)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Confidence 45556666666655554444443 3555 6899999999887654
Done!