BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008655
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ SD + + K Y+V + + R+ ++ AE DI I+ ++ LP G
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDI--IILDLMLPEIDG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
L++ K I ++ +P++M+SA+D V L LGA DY+ KP EL + R
Sbjct: 61 LEVAKTI---RKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
Query: 154 RRR 156
R +
Sbjct: 118 RSQ 120
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ SD + + K Y+V + + R+ ++ AE DI I+ + LP G
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDI--IILXLMLPEIDG 60
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
L++ K I ++ +P++M+SA+D V L LGA DY+ KP EL + R
Sbjct: 61 LEVAKTI---RKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
Query: 154 RRR 156
R +
Sbjct: 118 RSQ 120
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ + ++ + V +L + +Q ++ LN D LIL E LP G
Sbjct: 4 RILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLEWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+ + R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 154 R 154
R
Sbjct: 122 R 122
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+ + R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 154 R 154
R
Sbjct: 122 R 122
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL + LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLDWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ +K++ R+ + IPV+M++A+ E V+ L GA DY+ KP EL+ + R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 154 R 154
R
Sbjct: 122 R 122
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++D + ++ + L Y V S + + A DLIL ++ LP G
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGL--IKAREDHPDLILLDLGLPDFDG 96
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+++ + ++ L P+I+++A+D V V+ L LGA DYL+KP +ELL
Sbjct: 97 GDVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELL 145
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+R+L+ D+ + + LL K ++V V QV+DA+ E D D ++ ++ +P
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMN 72
Query: 93 GLKMLKY--ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
GL MLK + + ++ PV+++SA + C + GA +L KP+ +LL+
Sbjct: 73 GLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLAD 132
Query: 151 MWRRRRMLG 159
+ R L
Sbjct: 133 LAVSTRQLA 141
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ D+P
Sbjct: 8 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPN 65
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++AQ + ++ + GA+ Y+VKP L
Sbjct: 66 MDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D+D +++ + L +++V + Q + +E D L++ ++ P GL
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPD--LVICDLRXPQIDGL 65
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
++++ I + P+I++S +S V+ LRLGAADYL+KPL E L + H RR
Sbjct: 66 ELIRRIRQTA--SETPIIVLSGAGVMSDAVEALRLGAADYLIKPL---EDLAVLEHSVRR 120
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ ++ ++ + +L + YQ VR+ R+ + L+ + DLI+++V +P G
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMDGY 67
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140
+ +++ +L+ IPVI+++ + VV+ L GA D++ KP +
Sbjct: 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA----EGSDIDLILAEVDL 88
++IL+ D+ S V +LL + T ++ D L A + D D ++ + ++
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNT-----QEADDGLTALPMLKKGDFDFVVTDWNM 67
Query: 89 PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
P +G+ +LK I D+EL+ +PV+M++A+ + +++ + G Y+VKP L
Sbjct: 68 PGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATL 123
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D+D +++ + L +++V + Q + +E D L++ ++ P GL
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPD--LVICDLRXPQIDGL 65
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
++++ I + P+I++S S V+ LRLGAADYL+KPL E L + H RR
Sbjct: 66 ELIRRIRQTA--SETPIIVLSGAGVXSDAVEALRLGAADYLIKPL---EDLAVLEHSVRR 120
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + I+++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ D+P
Sbjct: 8 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPN 65
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 66 MDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + I+++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D++S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ D+P
Sbjct: 8 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPN 65
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 66 MDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D++S V +LL + + +V +DALN + ++++ ++P
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 58
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M +A+ + ++ + GA+ Y+VKP L
Sbjct: 59 MDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATL 112
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + I+ + ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIICDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ D+P
Sbjct: 8 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPN 65
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A + ++ + GA+ Y+VKP L
Sbjct: 66 MDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + V+ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATL 115
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 6 ELKFLVVDDFSTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 63
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 64 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 117
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ + D+DS+ + L T+ + +V+ AL ++ D+ +L+++ +P GL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDV--LLSDIRMPGMDGL 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+LK I + + +PVI+M+A ++ V + GA DYL KP +E + L
Sbjct: 64 ALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ + D+DS+ + L T+ + +V+ AL ++ D+ +L+++ +P GL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDV--LLSDIRMPGMDGL 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+LK I + + +PVI+M+A ++ V + GA DYL KP +E + L
Sbjct: 64 ALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ + D+DS+ + L T+ + +V+ AL ++ D+ +L+++ +P GL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDV--LLSDIRMPGMDGL 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+LK I + + +PVI+M+A ++ V + GA DYL KP +E + L
Sbjct: 64 ALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D++S V +LL + + +V +DALN + ++++ +P
Sbjct: 4 ELKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D++S +LL + + +V +DALN + ++++ ++P
Sbjct: 1 ELKFLVVDDNSTMRRITRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 58
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 59 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 112
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ +D + L K Y+V + ++ + E DLIL ++ LP G
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV--EELQPDLILLDIMLPNKDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+++ + + + ++ P+IM++A+D V L +GA DY+ KP T ELL R
Sbjct: 62 VEVCREVRKKYDM---PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118
Query: 154 RRRML 158
R+ L
Sbjct: 119 RQLTL 123
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D++S V +LL + + +V +DALN + ++++ +P
Sbjct: 4 ELKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLAWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ +K++ R+ + IPV+M++A+ E V+ L GA D + KP EL+ + R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 154 R 154
R
Sbjct: 122 R 122
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+++L+ D+ S + + L + Y+ V + + L+A +D +++ + ++P
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEM 64
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL ++K + D + IP+IM++A+ + V+ L+ G +Y+VKP
Sbjct: 65 NGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPF 112
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ N V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVGNGGTGKSTVRNLLKELGFN--NVEDAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+ ++++ + V +L + +Q ++ LN D LIL LP G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPD--LILLAWMLPGGSG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ +K++ R+ + IPV+M++A+ E V+ L GA D + KP EL+ + R
Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 154 R 154
R
Sbjct: 122 R 122
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ +D + L K Y+V + ++ + E DLIL ++ LP G
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV--EELQPDLILLDIMLPNKDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+++ + + + ++ P+IM++A+D V L +GA DY+ KP T ELL
Sbjct: 62 VEVCREVRKKYDM---PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELL 110
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDGGTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ + D+DS+ + L T+ + +V+ AL ++ D+ +L+ + +P GL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDV--LLSXIRMPGMDGL 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+LK I + + +PVI+M+A ++ V + GA DYL KP +E + L
Sbjct: 64 ALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDKFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ +P
Sbjct: 4 ELKFLVVDDQSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWKMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + +++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + +++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + +++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 69 IDALNAEGS-DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127
+DAL G DL++ ++ +P GLK+L++I R++ Q PV+++SA + ++ + K L
Sbjct: 41 VDALELLGGFTPDLMICDIAMPRMNGLKLLEHI-RNRGDQ-TPVLVISATENMADIAKAL 98
Query: 128 RLGAADYLVKPLR 140
RLG D L+KP++
Sbjct: 99 RLGVEDVLLKPVK 111
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++++ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D S V +LL + + +V +DALN + ++++ ++P
Sbjct: 3 ELKFLVVDAFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 60
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 61 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 114
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ +P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + + + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATL 116
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D++S V +LL + + +V +DALN + ++++ +P
Sbjct: 4 ELKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M+ A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++ + + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++ + + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+++L+ D+ S + + L + Y+ V + + L+A +D +++ + ++P
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEM 64
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL ++K + D + IP+IM++ + + V+ L+ G +Y+VKP
Sbjct: 65 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 112
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++A+ + ++ + GA+ ++VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 5 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 62
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M++ + + ++ + GA+ Y+VKP L
Sbjct: 63 MDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQ-VIDALNAEGSDIDLILAEVDLPMT 91
VR+L+ +++ + +D + L K + V + + ALN D+++ ++ LP+
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN---EPFDVVILDIMLPVH 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G ++LK + R+ + PV+M++A +V VK L +GA DYL KP EL+ +
Sbjct: 60 DGWEILKSM-RESGVN-TPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117
Query: 152 WRRR 155
RR+
Sbjct: 118 IRRK 121
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + +++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M+ A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I + +PV+M++A+ + ++ + GA+ Y+VKP L
Sbjct: 62 MDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ L D+D + A+ L + V+S S + + L+A+ + I +++++ +P GL
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGI--VISDIRMPGMDGL 63
Query: 95 KML-KYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ K + D +L P+I+++ ++ + V+ ++ GA D++ KP + L+ +
Sbjct: 64 ALFRKILALDPDL---PMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEK 120
Query: 154 RRRML 158
+RR++
Sbjct: 121 KRRLV 125
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 69 IDALNA-EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127
+DALN + ++++ ++P GL++LK I D + +PV+M++A+ + ++
Sbjct: 41 VDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAA 100
Query: 128 RLGAADYLVKPLRTNEL 144
+ GA+ Y+VKP L
Sbjct: 101 QAGASGYVVKPFTAATL 117
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+++L+ D+ S + + L + Y+ V + + L+A +D +++ ++P
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITAWNMPEM 64
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
GL ++K + D + IP+IM++ + + V+ L+ G +Y+VKP
Sbjct: 65 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 112
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ +++ + +D + LL K ++ T V + + G+DI +L ++ LP G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADI--VLLDLMLPGMSGT 64
Query: 95 KMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ K + + +PVIM++A+D E+ VV L LGA DY+ KP EL+ + R
Sbjct: 65 DVCKQL---RARSSVPVIMVTARDSEIDKVVG-LELGADDYVTKPYSARELIARIRAVLR 120
Query: 154 R 154
R
Sbjct: 121 R 121
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + ++++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M+ A+ + ++ + GA+ ++VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D++ + + L + Y V + + + AE DLI+ +V LP G
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK--KAETEKPDLIVLDVMLPKLDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++ K + + K + P++M++A+DE V L LGA DY+ KP E+
Sbjct: 63 IEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREV 111
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+L+ D+D ++ + +L Y+V S + + + D ++ +V LP G
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDA--LICDVLLPGIDGY 64
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ K + + + +P++ ++AQ ++S + GA DYL KP EL+
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELV 115
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
+D + RIL+ D+D++ ++ + +L + + Q + A+ D L+L ++
Sbjct: 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPD--LVLLDLM 58
Query: 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE 143
LP G+ + + + D +P++M++A+ + VV L GA DY++KP + E
Sbjct: 59 LPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ L D+D + A+ L + V+S S + + L+A+ + I +++++ +P GL
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGI--VISDIRMPGMDGL 63
Query: 95 KML-KYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
+ K + D +L P+I+++ ++ + V+ ++ GA D++ KP + L+
Sbjct: 64 ALFRKILALDPDL---PMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120
Query: 154 RRRML 158
+RR++
Sbjct: 121 KRRLV 125
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 81 LILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140
+IL +++LP T G ++L+ I +D+ L++IPV++M+ + C + Y+VKPL
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 141 TNEL 144
+ L
Sbjct: 125 IDRL 128
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 81 LILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140
L+L +++LP G+ +LK + + +R PV++++ D+ + +C LGA Y+ KP+
Sbjct: 62 LVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN 121
Query: 141 TNELLN 146
N
Sbjct: 122 YENFAN 127
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D+ S V +LL + + +V +DALN + +++ ++P
Sbjct: 4 ELKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D + +PV+M+ A+ + ++ + GA+ ++VKP L
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++LL D+ + V L K Y+V + + ++ L+ D LI+ ++ +P+ G
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPD--LIVLDIMMPVMDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
+LK + +E +RIPVI+++A+ L LGA + KP ++ + H+
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL 88
D+S +RILL + VF+ K YQ + Q +D + E D L+L ++ +
Sbjct: 9 DQSGIRILL--------NEVFN---KEGYQTFQAANGLQALDIVTKERPD--LVLLDMKI 55
Query: 89 PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
P G+++LK + E I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 56 PGMDGIEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 109
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 72 LNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGA 131
L A DLI+ ++ LP G++ ++ + ++ +PVI++SA+ E S + L GA
Sbjct: 39 LEAATRKPDLIILDLGLPDGDGIEFIRDL---RQWSAVPVIVLSARSEESDKIAALDAGA 95
Query: 132 ADYLVKPLRTNEL 144
DYL KP EL
Sbjct: 96 DDYLSKPFGIGEL 108
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
++LL D+ + V L K Y+V + + ++ L+ D LI+ + +P+ G
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPD--LIVLXIMMPVMDG 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
+LK + +E +RIPVI+++A+ L LGA + KP ++ + H+
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ S + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK + E I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 63 IEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPM 90
+++ L+ D S V +LL + + +V +DALN + ++++ + P
Sbjct: 4 ELKFLVVDKFSTXRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNXPN 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK I D +PV+ ++A+ + ++ + GA+ ++VKP L
Sbjct: 62 XDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ S + + K YQ + Q +D + E D L+L + +P G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLXMKIPGMDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK + E I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 63 IEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D S + + L Y V ++ ++ ++ ++ D L++ + D+
Sbjct: 5 KILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQIDHHHPD--LVILDXDIIGENS 61
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
+ + R K L+ +P+I++ + + +V L GA DYL KP N+LL+
Sbjct: 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
I++ D++ AV LL +V ++ SP + L E ++ L+ + G
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGN 65
Query: 95 KMLKYITRDKELQR-IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ L ++ K R +PV++ +A ++ + V+ ++ GA+D++VKP +LL
Sbjct: 66 EGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLL 117
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQV-TSVRSPRQVIDALNAEGSDI-DLILAEVDLPMT 91
RIL+ D+ + + + L Y+V T++ P AL D+ D+IL +V +P
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP----TALAMAARDLPDIILLDVMMPGM 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
G + + + D + IPV++++A D ++ L GA+D+L KP+
Sbjct: 60 DGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 76 GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135
G +DL++ GL+ + ++ +++PV+ M D+ +VK L +G D L
Sbjct: 193 GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDIL 252
Query: 136 VKPLRTNEL-LNLWTHMWRRRRMLGLAEKNILSYDFDLVASD 176
+P+ EL + T + R+R L +N L + +L +D
Sbjct: 253 SRPIDPQELSARVKTQIQRKRYTDYL--RNNLDHSLELAVTD 292
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQV-TSVRSPRQVIDALNAEGSDI-DLILAEVDLPMT 91
RIL+ D+ + + + L Y+V T++ P AL D+ D+IL +V +P
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP----TALAMAARDLPDIILLDVMMPGM 58
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
G + + + D + IPV++++A D ++ L GA+D+L KP+
Sbjct: 59 DGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 76 GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135
G +DL++ GL+ + ++ +++PV+ M D+ +VK L +G D L
Sbjct: 192 GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDIL 251
Query: 136 VKPLRTNEL-LNLWTHMWRRRRMLGLAEKNILSYDFDLVASD 176
+P+ EL + T + R+R L +N L + +L +D
Sbjct: 252 SRPIDPQELSARVKTQIQRKRYTDYL--RNNLDHSLELAVTD 291
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
IL+ D+ D + L + Y+ + S + ++ALNA + DL+L ++ G
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNA--TPPDLVLLDIXXEPXDGW 63
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
+ L+ I D + IPV+ ++A+ DY++KP ++L H+ R
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 155 RRMLGLAE 162
R + E
Sbjct: 124 RHSIAADE 131
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK + E I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 63 IEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQ-VIDALNAEGSDIDLILAEVDLPMT 91
VR+L+ +++ + +D + L K + V + ALN D+++ ++ LP+
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALN---EPFDVVILDIXLPVH 59
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G ++LK R+ + PV+ ++A +V VK L GA DYL KP EL+ +
Sbjct: 60 DGWEILKS-XRESGVN-TPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRAL 117
Query: 152 WRRR 155
RR+
Sbjct: 118 IRRK 121
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 64
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK + E I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 65 IEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 113
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 57 YQVTSVRSPRQVIDALNAEG-----SDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111
++V +VR + + L EG S DLIL ++LP G ++L I D L+RIPV
Sbjct: 29 HEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPV 88
Query: 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+++S + L Y+ K ++L +
Sbjct: 89 VVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQI 124
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
R+LL + DS S ++ VK Y + V + R I + E S LI+ ++ LP
Sbjct: 6 RVLLVE-DSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI--ERSKPQLIILDLKLPDMS 62
Query: 93 GLKMLKYITRDKELQRIP--VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G +L +I ++ IP VI+ +A V + V ++ GA D+L KP+ + L
Sbjct: 63 GEDVLDWINQND----IPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVAL 118
Query: 151 MWRRRRMLGLAE 162
+R ++ L E
Sbjct: 119 HLKRAKLEDLVE 130
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
S +IL+ D++S + LL +V + S + + + ID+++ ++ +P
Sbjct: 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPK 61
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150
G+ +L+ I K + VI+++ ++ + ++ GA +YL KP+ +L +
Sbjct: 62 LSGMDILREIK--KITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINN 119
Query: 151 MWRRRRML 158
R+++L
Sbjct: 120 AINRKKLL 127
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+ R+L+ D+++N + + L ++V + + Q +D A + D ++ +V P
Sbjct: 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD--RARETRPDAVILDVXXPGX 80
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151
G +L+ + D P + ++A+D + + L LG DY+ KP E++ +
Sbjct: 81 DGFGVLRRLRADG--IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 138
Query: 152 WRR 154
RR
Sbjct: 139 LRR 141
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 80 DLILAEVDLPMTKGLKMLKYI-TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
D I+ ++++P+ G+ ++ + D + +PV ++SA+ V V L GA DYLVKP
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDND---VPVCVLSARSSVDDRVAGLEAGADDYLVKP 109
Query: 139 LRTNELLNLWTHMWRRR 155
EL+ + RRR
Sbjct: 110 FVLAELVARVKALLRRR 126
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 69 IDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128
+ L ++G + ++I +V +P GL K I RD P++ ++A + S + +CL
Sbjct: 43 VKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLE 101
Query: 129 LGAADYLVKPLRTNELLNLWT 149
G +L KP++ +L + T
Sbjct: 102 SGMNGFLSKPIKRPKLKTILT 122
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 33 VRILLCDNDSNSSDAVF-SLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
V +LL D+ + +AV SL + P+Q + N + IL ++ +P
Sbjct: 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTV--ILQDLVMPGV 76
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
GL +L + + IP+I++S ++E +V GA DYLVK
Sbjct: 77 DGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 75 EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134
+ +DLIL +++LP GL + + + +E + +I+++ + + + L GA DY
Sbjct: 43 QNQSVDLILLDINLPDENGLXLTRAL---RERSTVGIILVTGRSDRIDRIVGLEXGADDY 99
Query: 135 LVKPLRTNEL-LNLWTHMWR 153
+ KPL EL + + +WR
Sbjct: 100 VTKPLELRELVVRVKNLLWR 119
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 69 IDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128
+ L ++G + ++I +V +P GL K I RD P++ ++A + S + +CL
Sbjct: 42 VKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLE 100
Query: 129 LGAADYLVKPLRTNELLNLWT 149
G +L KP++ +L + T
Sbjct: 101 SGMNGFLSKPIKRPKLKTILT 121
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK + E I VI+M+A E+ + + LGA + KP +E+
Sbjct: 63 IEILKRMKVIDE--NIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEI 111
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++LK + E I VI+M+A E+ ++ + LGA KP +E+
Sbjct: 63 IEILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEI 111
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 32 KVRILLCDNDSNS----SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
K+++L+ D+ S DA+ L K Q+T+ Q + + L++++ +
Sbjct: 6 KIKVLIVDDQVTSRLLLGDALQQLGFK---QITAAGDGEQGMKIMAQNPHH--LVISDFN 60
Query: 88 LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+P GL +L+ + + ++ I+++AQ + ++V K LGA + L KP ++
Sbjct: 61 MPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKM 117
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 66 RQVIDALN-AEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124
R+ + AL+ A + DLIL ++ LP GL++ K++ D +L IPV+ ++A
Sbjct: 32 REGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEE 91
Query: 125 KCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155
+ G Y+ KP+ L + R+
Sbjct: 92 RIREGGCEAYISKPISVVHFLETIKRLLERQ 122
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL 94
+ + D+D++ AV ++L + + S S Q ID L S + +L ++ P G
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGV--VLLDIXXPGXDGW 67
Query: 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ I + Q I ++ ++A++ L+ DY+ KP +L+
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDLI 118
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+IL+ D+ + + K YQ + Q +D + E D L+L ++ +P G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPD--LVLLDMKIPGMDG 62
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
+++ K + E I VI+M+A E+ ++ + LGA + KP +E+
Sbjct: 63 IEIAKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEI 111
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 69 IDALNAEGSD-----------IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117
IDA+ A+G++ I L + ++ GL +++ I R E + +I++S
Sbjct: 32 IDAVGADGAEEARLYLHYQKRIGLXITDLRXQPESGLDLIRTI-RASERAALSIIVVSGD 90
Query: 118 DEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
+V V LG D+L+KP+ +LL L
Sbjct: 91 TDVEEAVDVXHLGVVDFLLKPVDLGKLLEL 120
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
R+L+ D+ + + ++ K Y+V + R+ ++ DI + ++ +P
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDI--VTMDITMPEMN 60
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL---RTNELLN 146
G+ +K I + +I I+ SA + ++V++ ++ GA D++VKP R E LN
Sbjct: 61 GIDAIKEIMKIDPNAKI--IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALN 115
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
R+L+ D+ + + ++ K Y+V + R+ ++ DI + ++ +P
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDI--VTMDITMPEMN 61
Query: 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL---RTNELLN 146
G+ +K I + +I I+ SA + ++V++ ++ GA D++VKP R E LN
Sbjct: 62 GIDAIKEIMKIDPNAKI--IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALN 116
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RI+L D + A S L + + + + + + A + LI+ E ++P G
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPV--AVKTHPHLIITEANMPKISG 67
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
+ + + ++ + IPVI +S + + L +G D++ KP+
Sbjct: 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 79 IDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
I LI+ ++ P+ K GL++L I + PVI+ + D L+ +DY++K
Sbjct: 51 ITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILK 110
Query: 138 PLRTNELLN 146
P T L N
Sbjct: 111 PYPTKRLEN 119
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
DI+L++ +++LP GL + + + +E + ++ ++ +D + L +GA DY+ K
Sbjct: 47 DINLVIMDINLPGKNGLLLAREL---REQANVALMFLTGRDNEVDKILGLEIGADDYITK 103
Query: 138 PLRTNEL 144
P EL
Sbjct: 104 PFNPREL 110
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
DI+L++ +++LP GL + + + +E + + ++ +D + L +GA DY+ K
Sbjct: 47 DINLVIXDINLPGKNGLLLAREL---REQANVALXFLTGRDNEVDKILGLEIGADDYITK 103
Query: 138 PLRTNEL 144
P EL
Sbjct: 104 PFNPREL 110
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
D+I ++++P G++ LK I + K R+ ++ ++ ++ ++ LR GA D++ KP
Sbjct: 73 DVITMDIEMPNLNGIEALKLIMK-KAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
+ID++ + +P G+ L I + R VIM+SA + +V CL GA ++VK
Sbjct: 83 NIDIVTLXITMPKMDGITCLSNIMEFDKNAR--VIMISALGKEQLVKDCLIKGAKTFIVK 140
Query: 138 PLRTNELL 145
PL ++L
Sbjct: 141 PLDRAKVL 148
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
+LIL +++LP G ++L I ++ +L+RIPV++++ V+ L YL K
Sbjct: 63 NLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSR 122
Query: 140 RTNELL 145
+L
Sbjct: 123 NLKDLF 128
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 47 AVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR-DKE 105
AV + L K + V ++ ++ L E IDL+ +V +G + L I R +E
Sbjct: 19 AVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV----FEGEESLNLIRRIREE 72
Query: 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
V ++SA + +++ ++ GA DY++KP R + LL
Sbjct: 73 FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLL 112
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 67 QVIDALNAEGSDI-------DLILAEVDLPMTKGLKMLK-YITRDKELQRIPVIMMSAQD 118
QV DA +A+ +D D+ + ++ LP GL +++ + + D L P+++++A++
Sbjct: 26 QVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL---PILVLTARE 82
Query: 119 EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154
V+ L GA DY+ KP E+ + RR
Sbjct: 83 SWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 89 PMTKGLKMLKYIT-RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
P GL++LK+I R E + VI+++ + V+ +++GA D+L KP E+
Sbjct: 55 PDVNGLEILKWIKERSPETE---VIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP-----RQVIDALNAEGSDIDLILAE 85
SK+R+L D+ + + ++ S +P R +I N D++ +
Sbjct: 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNP-----DVLTLD 56
Query: 86 VDLPMTKGLKMLKYITRDKELQRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKP 138
V++P GL L+ + R L+ +PV+M+S+ V ++ L LGA D++ KP
Sbjct: 57 VEMPRMDGLDFLEKLMR---LRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM 90
+K + + D+D + + + +LL ++V + ++ E ++ ++ +P
Sbjct: 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGC--LVLDMRMPG 60
Query: 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
G+++ + +T + IP++ ++A ++ + V+ ++ GA ++L KP LL+
Sbjct: 61 MSGIELQEQLTAISD--GIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLD 114
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
D++L ++ +P GL +L+ I E Q VIM++A + V K + LGA+ +++KP
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQP-NVIMLTAFGQEDVTKKAVELGASYFILKPF 108
Query: 140 RTNELLNLWTHM 151
++ NL H+
Sbjct: 109 ---DMENLAHHI 117
>pdb|2PYX|A Chain A, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
From Shewanella Frigidimarina Ncimb 400 At 1.50 A
Resolution
pdb|2PYX|B Chain B, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
From Shewanella Frigidimarina Ncimb 400 At 1.50 A
Resolution
Length = 526
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 271 AFFTYVKSNMPRDSSPRIVNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWENYSQ 330
A + S + + P D +A R+ E+ Q QQ++ ++H +
Sbjct: 366 ALIEWTASTLAQQLPPNRXVXDTISA---RVNERYQQHWQQIIDFLKLHYVISQRQEDRY 422
Query: 331 GEDFRSSSSVPDS----LSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNEPPQATYQY 386
D R S+S+PDS L + R TP Q+ ++K+ F P A++QY
Sbjct: 423 WRDHRESNSIPDSLQAXLELWRYQTPSQ---QDISYKEALF------------PAASFQY 467
Query: 387 YMSGAMNQVMLPS 399
+ G LP+
Sbjct: 468 VLYGXSFNTQLPT 480
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 26 GFIDR-SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLIL 83
G + R S +++L+ ++ S DA+ LL V SV + +A+ E +D+ +
Sbjct: 13 GLVPRGSHMKVLVAEDQSMLRDAMCQLLT-LQPDVESVLQAKNGQEAIQLLEKESVDIAI 71
Query: 84 AEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE 143
+V++P+ GL++L++I R ++L+ V++++ + ++ G Y++K +
Sbjct: 72 LDVEMPVKTGLEVLEWI-RSEKLE-TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIAD 129
Query: 144 LL 145
L+
Sbjct: 130 LM 131
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
D++L + +P GL +L+ I E Q VIM++A + V K + LGA+ +++KP
Sbjct: 50 DILLLXIIMPHLDGLAVLERIRAGFEHQP-NVIMLTAFGQEDVTKKAVELGASYFILKPF 108
Query: 140 RTNELLNLWTHM 151
++ NL H+
Sbjct: 109 ---DMENLAHHI 117
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
+LIL +++LP G ++L I ++ +L+RIPV++++ V+ L YL K
Sbjct: 63 NLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK- 92
RIL+ D+D + A+ +L + +QV + DA + S + + +DL M K
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNG---FDA-GIKLSTFEPAIMTLDLSMPKL 63
Query: 93 -GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLN 146
GL +++ + ++K + ++++S D+ + + + GA DYL KP + LL+
Sbjct: 64 DGLDVIRSLRQNKVANQPKILVVSGLDKAKLQ-QAVTEGADDYLEKPFDNDALLD 117
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 93 GLKMLKYITRDKELQRIP---VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144
GL++LK+I +R P VI+++ + V+ +++GA D+L KP E+
Sbjct: 59 GLEILKWIK-----ERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92
+++L+ D + S LLV +VT+V S + + ++ E ++ +V +P +
Sbjct: 8 LKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK---VVFMDVCMPGVE 64
Query: 93 ----GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148
L++ + T+ + QR ++ +S + S KC+ G L+KP+ + + ++
Sbjct: 65 NYQIALRIHEKFTKQRH-QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVL 123
Query: 149 THMWRRR 155
+ + R
Sbjct: 124 SDLLEPR 130
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT 91
+ +IL+ D D ++ + L + + + + I + + + DLI E+ L
Sbjct: 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSDG 61
Query: 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
G + K I + + P++ + +E ++ L G DYL+KPL
Sbjct: 62 DGWTLCKKI---RNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPL 106
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
RIL+C++D + + + L K + V S Q ++ + + +++LP G
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQVARRPYAAXTV--DLNLPDQDG 65
Query: 94 LKMLKYITRDKELQRIPVIMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELL 145
+ +++ + RD + + ++++SA E + L + +L KP+ N L+
Sbjct: 66 VSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLI 118
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 29 DRSKVRILLCDNDSNSSDAVF-SLLVKCSYQVTSVRSPRQVIDALNAEGSDID--LILAE 85
D + +LL D+ + +AV L S P Q I A+ I +IL +
Sbjct: 13 DENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAI----AQAVQIKPTVILQD 68
Query: 86 VDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137
+ +P GL +++ + + IP+I++S +++ + GA DYLVK
Sbjct: 69 LVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 81 LILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
+++ ++ +P G+++L+ + K IP I+++ +V + V+ ++ GA D++ KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGDLK--INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPF 106
>pdb|2HQO|A Chain A, Structure Of A Atypical Orphan Response Regulator Protein
Revealed A New Phosphorylation-Independent Regulatory
Mechanism
pdb|2HQO|B Chain B, Structure Of A Atypical Orphan Response Regulator Protein
Revealed A New Phosphorylation-Independent Regulatory
Mechanism
Length = 123
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV-VKCLRLGAADYLVKPLRT 141
DL M L +++R KE V+++S+ + S V GA DY+ KP R+
Sbjct: 46 DLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRS 101
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+I + D+D N V L Q+ V++ D LN E + +++ +V LP G
Sbjct: 4 KIAVVDDDKNILKKVSEKL----QQLGRVKTFLTGEDFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145
++ + I + + ++ + + DE V+K GA DY+ KP LL
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDES--VLKGFEAGADDYVTKPFNPEILL 108
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
D+ L + +P G ++ + R EL V+++SA DE ++V + L+ GAA +L+K
Sbjct: 63 DVALLDYRMPGMDGAQVAAAV-RSYELP-TRVLLISAHDEPAIVYQALQQGAAGFLLKDS 120
Query: 140 RTNELL 145
E++
Sbjct: 121 TRTEIV 126
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 81 LILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL 139
+++ + +P G+++L+ + K IP I+++ +V + V+ ++ GA D++ KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGDLK--INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPF 106
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 28/143 (19%)
Query: 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87
++ SK +ILL +++ + S++ + + + + + I A+N+ S DL+L +V
Sbjct: 4 METSKPKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINS--SSYDLVLMDVC 61
Query: 88 LPMTKGLKMLKYITRDKE--------------------------LQRIPVIMMSAQDEVS 121
+P+ GLK + I +E R+P+I M+A
Sbjct: 62 MPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAE 121
Query: 122 VVVKCLRLGAADYLVKPLRTNEL 144
+C G ++ KP+ +L
Sbjct: 122 SSEECYANGMDSFISKPVTLQKL 144
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93
+I + D+D N V L Q+ V++ D LN E + +++ +V LP G
Sbjct: 4 KIAVVDDDKNILKKVSEKL----QQLGRVKTFLTGEDFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153
++ + I + + ++ + + DE V+K GA DY+ KP LL R
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDES--VLKGFEAGADDYVTKPFNPEILLA------R 110
Query: 154 RRRMLGLAEKNILSYDF 170
+R L +K + YDF
Sbjct: 111 VKRFLEREKKGL--YDF 125
>pdb|2QV0|A Chain A, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
pdb|2QV0|B Chain B, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
Length = 143
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALN-AEGSDIDLILAEVDLPM 90
K+++++ + D + S L+ Q+ V S +D L + + +D I ++++P
Sbjct: 9 KMKVIIVE-DEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPS 67
Query: 91 TKGLKMLKYITRDKELQRIP-VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147
G+ + + I+ + P ++ ++A E +V + L A DY++KP + + ++N+
Sbjct: 68 LDGVLLAQNIS---QFAHKPFIVFITAWKEHAV--EAFELEAFDYILKPYQESRIINM 120
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 80 DLILAEVDLPMTKGLKMLKYITRDKELQRI-PVIMMSAQDEVSVVVKCLRLGAADYLVKP 138
DL++ +V +P G+ I +RI P+++++A + +V + GA YLVKP
Sbjct: 60 DLVIMDVKMPRRDGIDAASEIAS----KRIAPIVVLTAFSQRDLVERARDAGAMAYLVKP 115
Query: 139 LRTNELL 145
++L+
Sbjct: 116 FSISDLI 122
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE 143
+P++ ++A+ + VV L GA DY+ KP + E
Sbjct: 77 VPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118
V + ++ +D L A+ ++DLIL ++++P+ G++ L++ + K +I ++ A
Sbjct: 42 VAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRH-AKLKTRAKICMLSSVAVS 99
Query: 119 EVSVVVKCLRLGAADYLVKP 138
+ LGA + KP
Sbjct: 100 GSPHAARARELGADGVVAKP 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,567,188
Number of Sequences: 62578
Number of extensions: 549229
Number of successful extensions: 1258
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 151
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)