Query 008655
Match_columns 558
No_of_seqs 427 out of 2379
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 14:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2201 CheB Chemotaxis respon 99.9 3.7E-27 8.1E-32 245.9 18.2 191 32-260 1-198 (350)
2 COG2204 AtoC Response regulato 99.9 1.2E-24 2.6E-29 234.7 16.4 166 31-200 3-181 (464)
3 COG0745 OmpR Response regulato 99.9 8.5E-21 1.8E-25 189.3 16.5 120 33-156 1-120 (229)
4 PRK12555 chemotaxis-specific m 99.8 4.5E-19 9.8E-24 184.8 21.1 187 33-260 1-194 (337)
5 COG4753 Response regulator con 99.8 9.4E-20 2E-24 196.9 15.1 122 32-157 1-125 (475)
6 PRK00742 chemotaxis-specific m 99.8 1.1E-18 2.3E-23 183.0 19.6 198 30-260 1-205 (354)
7 COG4566 TtrR Response regulato 99.8 2.5E-18 5.4E-23 165.2 14.3 121 32-156 4-124 (202)
8 PF00072 Response_reg: Respons 99.8 1E-17 2.2E-22 144.2 16.5 111 35-149 1-112 (112)
9 COG4565 CitB Response regulato 99.8 3.8E-18 8.3E-23 166.7 15.4 123 33-159 1-125 (224)
10 PF06203 CCT: CCT motif; Inte 99.7 7.1E-19 1.5E-23 132.3 2.6 44 475-518 1-44 (45)
11 COG2197 CitB Response regulato 99.7 1.2E-16 2.6E-21 157.4 16.8 119 33-155 1-121 (211)
12 COG0784 CheY FOG: CheY-like re 99.7 3.4E-16 7.3E-21 137.9 17.3 121 29-152 2-124 (130)
13 COG3437 Response regulator con 99.7 7.7E-17 1.7E-21 167.7 13.6 121 31-153 13-134 (360)
14 PRK10046 dpiA two-component re 99.7 7.1E-16 1.5E-20 151.3 18.1 123 32-158 4-128 (225)
15 PLN03029 type-a response regul 99.7 1.9E-15 4.2E-20 149.4 18.5 125 30-154 6-148 (222)
16 PRK11173 two-component respons 99.7 2.9E-15 6.2E-20 145.9 17.3 119 31-154 2-120 (237)
17 COG3706 PleD Response regulato 99.7 1.5E-15 3.2E-20 163.5 16.6 125 31-157 131-255 (435)
18 PRK10529 DNA-binding transcrip 99.7 3.3E-15 7.2E-20 143.3 17.4 117 33-154 2-118 (225)
19 PRK10816 DNA-binding transcrip 99.7 3.9E-15 8.4E-20 142.9 17.3 118 33-154 1-118 (223)
20 PRK10923 glnG nitrogen regulat 99.6 5.3E-15 1.1E-19 160.3 19.6 164 31-198 2-176 (469)
21 PRK10161 transcriptional regul 99.6 6.4E-15 1.4E-19 142.0 17.6 121 32-154 2-122 (229)
22 PRK10643 DNA-binding transcrip 99.6 7.2E-15 1.6E-19 139.5 17.5 118 33-154 1-118 (222)
23 PRK09836 DNA-binding transcrip 99.6 6.9E-15 1.5E-19 141.6 17.4 117 34-154 2-118 (227)
24 TIGR02154 PhoB phosphate regul 99.6 7.3E-15 1.6E-19 139.6 17.2 121 32-154 2-122 (226)
25 PRK10766 DNA-binding transcrip 99.6 8.4E-15 1.8E-19 140.1 17.3 119 32-155 2-120 (221)
26 PRK10430 DNA-binding transcrip 99.6 9E-15 2E-19 144.6 18.0 123 32-156 1-125 (239)
27 PRK11083 DNA-binding response 99.6 8E-15 1.7E-19 139.8 16.9 121 30-154 1-121 (228)
28 PRK10365 transcriptional regul 99.6 6.8E-15 1.5E-19 157.6 18.0 123 29-155 2-124 (441)
29 PRK10336 DNA-binding transcrip 99.6 1.3E-14 2.9E-19 137.7 17.1 118 33-154 1-118 (219)
30 PRK09468 ompR osmolarity respo 99.6 1.3E-14 2.7E-19 141.1 17.3 120 31-154 4-123 (239)
31 PRK10701 DNA-binding transcrip 99.6 1.4E-14 3E-19 141.1 17.4 117 33-154 2-118 (240)
32 CHL00148 orf27 Ycf27; Reviewed 99.6 2.4E-14 5.1E-19 138.2 18.1 120 30-154 4-123 (240)
33 PRK10955 DNA-binding transcrip 99.6 1.8E-14 3.9E-19 138.3 17.0 116 33-154 2-117 (232)
34 PRK15115 response regulator Gl 99.6 1.2E-14 2.7E-19 156.2 17.5 123 29-155 2-124 (444)
35 TIGR03787 marine_sort_RR prote 99.6 2.3E-14 5E-19 137.6 17.6 118 34-155 2-121 (227)
36 PRK13856 two-component respons 99.6 2.2E-14 4.8E-19 140.5 17.4 117 33-154 2-119 (241)
37 PRK10840 transcriptional regul 99.6 2.6E-14 5.6E-19 138.7 16.9 121 30-154 1-126 (216)
38 COG3947 Response regulator con 99.6 2.7E-15 5.8E-20 152.4 9.8 119 33-157 1-119 (361)
39 PRK11517 transcriptional regul 99.6 3.8E-14 8.2E-19 135.3 17.0 117 33-154 1-117 (223)
40 PRK11361 acetoacetate metaboli 99.6 3.2E-14 6.8E-19 153.3 17.9 161 32-196 4-179 (457)
41 TIGR02915 PEP_resp_reg putativ 99.6 3.4E-14 7.3E-19 152.9 18.0 158 35-198 1-177 (445)
42 TIGR02875 spore_0_A sporulatio 99.6 4.8E-14 1E-18 140.7 17.1 120 32-153 2-123 (262)
43 COG4567 Response regulator con 99.6 1.8E-14 3.9E-19 134.4 12.8 112 34-149 11-122 (182)
44 PRK11107 hybrid sensory histid 99.6 2.6E-14 5.7E-19 165.1 17.2 121 31-153 666-786 (919)
45 PRK09581 pleD response regulat 99.6 1.9E-14 4E-19 151.9 13.8 121 31-154 154-274 (457)
46 PRK09483 response regulator; P 99.6 7.9E-14 1.7E-18 132.8 16.7 120 32-155 1-122 (217)
47 TIGR01387 cztR_silR_copR heavy 99.6 7.2E-14 1.6E-18 132.3 16.3 116 35-154 1-116 (218)
48 PRK10841 hybrid sensory kinase 99.6 4.9E-14 1.1E-18 165.4 18.1 121 31-155 800-920 (924)
49 PRK09958 DNA-binding transcrip 99.6 9.8E-14 2.1E-18 130.9 16.2 118 33-154 1-119 (204)
50 TIGR01818 ntrC nitrogen regula 99.6 1E-13 2.2E-18 149.7 18.2 117 35-155 1-117 (463)
51 PRK09935 transcriptional regul 99.6 1.4E-13 3.1E-18 129.5 16.7 121 30-154 1-123 (210)
52 PRK15347 two component system 99.5 7.5E-14 1.6E-18 161.6 17.3 120 32-153 690-811 (921)
53 PRK14084 two-component respons 99.5 1.8E-13 3.9E-18 134.7 16.8 116 33-154 1-118 (246)
54 KOG0519 Sensory transduction h 99.5 3.8E-14 8.3E-19 163.6 13.8 120 31-152 665-784 (786)
55 PRK10360 DNA-binding transcrip 99.5 1.8E-13 4E-18 128.2 15.6 116 32-154 1-118 (196)
56 PRK10610 chemotaxis regulatory 99.5 9.3E-13 2E-17 111.1 17.7 125 28-154 1-126 (129)
57 PRK11697 putative two-componen 99.5 2.7E-13 5.9E-18 132.3 16.2 115 32-153 1-117 (238)
58 PRK11466 hybrid sensory histid 99.5 2.2E-13 4.8E-18 158.1 17.5 121 31-154 680-800 (914)
59 PRK15479 transcriptional regul 99.5 7.5E-13 1.6E-17 125.6 17.4 119 33-155 1-119 (221)
60 TIGR02956 TMAO_torS TMAO reduc 99.5 2.7E-13 5.8E-18 158.0 17.3 122 30-153 700-822 (968)
61 PRK10710 DNA-binding transcrip 99.5 9.7E-13 2.1E-17 126.9 17.8 117 33-154 11-127 (240)
62 PRK09581 pleD response regulat 99.5 8.5E-13 1.8E-17 139.3 18.6 123 33-157 3-125 (457)
63 PRK11091 aerobic respiration c 99.5 3.7E-13 8E-18 154.2 16.8 121 30-153 523-644 (779)
64 PRK09390 fixJ response regulat 99.5 6.8E-13 1.5E-17 122.8 14.9 120 31-154 2-121 (202)
65 PRK09959 hybrid sensory histid 99.5 6.8E-13 1.5E-17 158.6 16.9 119 31-153 957-1075(1197)
66 PRK13435 response regulator; P 99.5 1.7E-12 3.8E-17 117.4 14.7 117 30-154 3-121 (145)
67 PRK15369 two component system 99.4 5.3E-12 1.1E-16 117.3 16.9 121 30-154 1-123 (211)
68 PRK10651 transcriptional regul 99.4 5.6E-12 1.2E-16 118.7 16.9 120 31-154 5-126 (216)
69 PRK10403 transcriptional regul 99.4 6.7E-12 1.5E-16 117.8 17.0 120 31-154 5-126 (215)
70 PRK13558 bacterio-opsin activa 99.4 1.9E-12 4.1E-17 145.9 14.6 118 32-153 7-126 (665)
71 PRK10100 DNA-binding transcrip 99.4 2.4E-12 5.2E-17 127.5 13.3 119 30-157 8-130 (216)
72 PRK11475 DNA-binding transcrip 99.4 8.1E-12 1.8E-16 123.1 13.2 108 45-156 3-117 (207)
73 COG3707 AmiR Response regulato 99.3 1.4E-11 3E-16 119.4 13.5 121 28-153 1-122 (194)
74 PRK15411 rcsA colanic acid cap 99.3 1.9E-11 4.1E-16 120.1 14.2 117 33-154 1-123 (207)
75 PRK09191 two-component respons 99.3 8.8E-11 1.9E-15 116.2 15.8 117 31-154 136-254 (261)
76 cd00156 REC Signal receiver do 99.2 1.6E-10 3.5E-15 92.5 13.2 111 36-150 1-111 (113)
77 PRK13837 two-component VirA-li 99.2 1.9E-10 4.2E-15 133.6 18.2 118 32-154 697-814 (828)
78 PRK13557 histidine kinase; Pro 99.2 6.5E-10 1.4E-14 120.0 16.9 120 31-153 414-534 (540)
79 PRK10693 response regulator of 99.1 3.2E-10 6.9E-15 117.3 12.8 89 61-153 2-91 (303)
80 COG3279 LytT Response regulato 99.0 8.8E-10 1.9E-14 111.3 10.6 117 32-154 1-119 (244)
81 PRK15029 arginine decarboxylas 98.9 8.2E-09 1.8E-13 118.7 14.8 117 34-154 2-133 (755)
82 PRK11107 hybrid sensory histid 98.3 7.6E-06 1.7E-10 95.2 14.6 116 31-152 535-650 (919)
83 COG3706 PleD Response regulato 98.1 7.4E-06 1.6E-10 89.2 7.5 93 57-155 13-105 (435)
84 PF01339 CheB_methylest: CheB 97.6 2.3E-05 5E-10 76.1 1.1 39 219-260 1-40 (182)
85 smart00448 REC cheY-homologous 97.5 0.00069 1.5E-08 46.8 8.1 54 34-89 2-55 (55)
86 PF06490 FleQ: Flagellar regul 97.4 0.0011 2.5E-08 59.2 10.1 107 34-151 1-107 (109)
87 PRK02261 methylaspartate mutas 97.0 0.022 4.7E-07 53.1 14.1 120 30-153 1-135 (137)
88 cd02071 MM_CoA_mut_B12_BD meth 96.7 0.038 8.2E-07 50.0 13.2 107 39-149 10-121 (122)
89 TIGR00640 acid_CoA_mut_C methy 96.6 0.1 2.2E-06 48.4 14.9 116 33-152 3-127 (132)
90 cd02067 B12-binding B12 bindin 95.8 0.12 2.6E-06 46.1 10.8 94 39-137 10-109 (119)
91 PF03709 OKR_DC_1_N: Orn/Lys/A 95.7 0.12 2.7E-06 46.4 10.8 105 45-153 6-113 (115)
92 KOG1601 GATA-4/5/6 transcripti 94.9 0.01 2.3E-07 58.4 1.3 63 78-140 63-125 (340)
93 TIGR01501 MthylAspMutase methy 94.9 0.56 1.2E-05 43.8 12.5 104 45-152 18-132 (134)
94 PF09425 CCT_2: Divergent CCT 94.5 0.02 4.4E-07 39.1 1.5 25 473-498 2-26 (27)
95 PRK10618 phosphotransfer inter 94.5 0.038 8.2E-07 66.0 4.7 50 31-88 688-737 (894)
96 cd04728 ThiG Thiazole synthase 93.7 1 2.2E-05 46.2 12.4 116 32-158 93-230 (248)
97 TIGR03815 CpaE_hom_Actino heli 93.6 0.21 4.5E-06 52.3 7.7 84 56-151 1-85 (322)
98 PRK15399 lysine decarboxylase 93.3 0.87 1.9E-05 53.2 12.7 116 33-154 1-123 (713)
99 PRK00208 thiG thiazole synthas 93.1 2.5 5.3E-05 43.5 14.1 116 32-158 93-230 (250)
100 cd02070 corrinoid_protein_B12- 92.9 1.9 4E-05 42.4 12.7 100 32-136 82-190 (201)
101 COG2185 Sbm Methylmalonyl-CoA 92.5 4.3 9.3E-05 38.5 13.7 118 31-152 11-137 (143)
102 PRK15400 lysine decarboxylase 92.5 1.1 2.5E-05 52.3 12.0 116 33-154 1-123 (714)
103 cd02072 Glm_B12_BD B12 binding 91.8 3.7 7.9E-05 38.2 12.3 101 45-149 16-127 (128)
104 cd02069 methionine_synthase_B1 90.8 2.8 6.2E-05 41.9 11.4 101 32-136 88-200 (213)
105 COG4999 Uncharacterized domain 90.7 0.95 2.1E-05 41.7 7.1 107 33-147 12-120 (140)
106 CHL00162 thiG thiamin biosynth 88.9 13 0.00027 38.7 14.3 121 32-159 107-245 (267)
107 PRK00043 thiE thiamine-phospha 88.8 7.5 0.00016 37.6 12.5 75 56-136 104-187 (212)
108 PF02310 B12-binding: B12 bind 88.8 6.2 0.00013 34.6 10.8 92 41-137 13-111 (121)
109 PF01408 GFO_IDH_MocA: Oxidore 88.3 16 0.00036 31.7 13.4 102 33-151 1-109 (120)
110 TIGR02370 pyl_corrinoid methyl 87.2 5.7 0.00012 39.0 10.5 92 40-136 96-192 (197)
111 PRK01130 N-acetylmannosamine-6 86.6 9.3 0.0002 37.8 11.8 85 47-137 109-202 (221)
112 PRK09426 methylmalonyl-CoA mut 85.6 11 0.00024 44.4 13.3 117 32-152 582-707 (714)
113 PF05690 ThiG: Thiazole biosyn 84.1 23 0.0005 36.4 13.1 120 32-158 93-230 (247)
114 PRK00278 trpC indole-3-glycero 83.5 28 0.0006 35.8 13.8 95 36-136 139-239 (260)
115 PRK03958 tRNA 2'-O-methylase; 82.5 12 0.00026 36.7 10.1 78 33-116 32-111 (176)
116 COG0512 PabA Anthranilate/para 82.4 3.9 8.5E-05 40.5 6.7 77 32-115 1-81 (191)
117 TIGR03151 enACPred_II putative 82.1 14 0.00031 38.9 11.4 83 48-136 101-189 (307)
118 PF10087 DUF2325: Uncharacteri 81.4 14 0.00031 31.9 9.4 90 34-127 1-93 (97)
119 TIGR02311 HpaI 2,4-dihydroxyhe 80.3 22 0.00048 36.3 11.7 86 62-150 19-105 (249)
120 cd02068 radical_SAM_B12_BD B12 80.2 18 0.00038 32.5 9.9 102 45-150 5-109 (127)
121 PF03602 Cons_hypoth95: Conser 78.4 5.6 0.00012 38.7 6.4 77 27-103 60-140 (183)
122 COG2022 ThiG Uncharacterized e 78.3 17 0.00037 37.3 9.8 120 31-157 99-236 (262)
123 PRK10558 alpha-dehydro-beta-de 78.2 22 0.00048 36.6 11.0 100 46-148 8-110 (256)
124 cd04729 NanE N-acetylmannosami 78.2 36 0.00078 33.6 12.2 84 48-137 114-206 (219)
125 PRK10128 2-keto-3-deoxy-L-rham 78.1 24 0.00052 36.7 11.2 98 47-147 8-108 (267)
126 cd02065 B12-binding_like B12 b 77.9 16 0.00034 32.1 8.6 73 39-115 10-87 (125)
127 TIGR03239 GarL 2-dehydro-3-deo 77.3 26 0.00055 36.0 11.1 82 64-148 21-103 (249)
128 PRK05749 3-deoxy-D-manno-octul 76.8 26 0.00056 37.6 11.6 110 32-153 262-387 (425)
129 PRK11840 bifunctional sulfur c 75.8 94 0.002 33.4 15.0 120 32-158 167-304 (326)
130 COG3604 FhlA Transcriptional r 74.9 1.4 3.1E-05 49.4 1.3 52 171-222 224-285 (550)
131 PRK07695 transcriptional regul 74.6 70 0.0015 31.1 13.0 71 57-134 96-174 (201)
132 PRK08385 nicotinate-nucleotide 73.7 51 0.0011 34.5 12.3 96 34-135 156-257 (278)
133 PLN02871 UDP-sulfoquinovose:DA 73.0 50 0.0011 36.1 12.8 108 32-154 290-400 (465)
134 TIGR00693 thiE thiamine-phosph 72.8 31 0.00067 33.1 10.0 70 61-136 102-179 (196)
135 cd00564 TMP_TenI Thiamine mono 72.6 34 0.00074 32.1 10.0 74 56-136 95-177 (196)
136 TIGR00343 pyridoxal 5'-phospha 72.1 29 0.00062 36.6 9.9 60 92-154 184-250 (287)
137 TIGR00095 RNA methyltransferas 71.9 29 0.00063 33.8 9.5 88 29-116 69-159 (189)
138 PRK15484 lipopolysaccharide 1, 71.6 1E+02 0.0022 32.9 14.4 110 32-154 224-344 (380)
139 cd04727 pdxS PdxS is a subunit 71.6 32 0.00069 36.2 10.1 87 61-153 118-246 (283)
140 PF02254 TrkA_N: TrkA-N domain 71.5 49 0.0011 28.6 10.1 93 33-136 22-115 (116)
141 PF03060 NMO: Nitronate monoox 71.5 40 0.00087 35.7 11.2 83 48-136 128-218 (330)
142 cd04730 NPD_like 2-Nitropropan 71.5 68 0.0015 31.6 12.3 84 48-137 94-185 (236)
143 TIGR02026 BchE magnesium-proto 71.4 53 0.0011 36.8 12.7 106 41-151 21-135 (497)
144 cd00452 KDPG_aldolase KDPG and 71.2 33 0.00071 33.3 9.7 79 51-137 92-171 (190)
145 PRK05458 guanosine 5'-monophos 71.0 73 0.0016 34.2 13.0 97 34-136 113-229 (326)
146 TIGR00007 phosphoribosylformim 69.9 62 0.0013 32.0 11.6 68 64-136 146-217 (230)
147 TIGR03088 stp2 sugar transfera 68.7 47 0.001 34.5 10.9 108 32-154 229-338 (374)
148 PF04131 NanE: Putative N-acet 68.5 75 0.0016 31.7 11.5 85 46-137 82-173 (192)
149 COG3967 DltE Short-chain dehyd 68.5 30 0.00065 35.3 8.7 82 30-115 3-85 (245)
150 PRK05567 inosine 5'-monophosph 68.0 76 0.0017 35.6 13.0 101 32-136 240-359 (486)
151 cd03823 GT1_ExpE7_like This fa 67.7 1.1E+02 0.0024 30.4 13.0 76 66-154 254-329 (359)
152 cd04726 KGPDC_HPS 3-Keto-L-gul 66.9 1.1E+02 0.0023 29.4 12.3 86 45-137 92-186 (202)
153 cd00331 IGPS Indole-3-glycerol 66.8 83 0.0018 30.9 11.7 81 52-136 117-200 (217)
154 PTZ00314 inosine-5'-monophosph 66.3 60 0.0013 36.6 11.8 100 32-137 253-373 (495)
155 COG3829 RocR Transcriptional r 66.2 3 6.4E-05 47.2 1.4 52 171-222 246-307 (560)
156 PRK09140 2-dehydro-3-deoxy-6-p 65.9 57 0.0012 32.4 10.3 94 49-147 4-99 (206)
157 COG0742 N6-adenine-specific me 65.9 37 0.00081 33.6 8.8 71 17-88 51-124 (187)
158 PF03328 HpcH_HpaI: HpcH/HpaI 65.0 67 0.0015 31.7 10.7 84 63-149 8-104 (221)
159 PRK05458 guanosine 5'-monophos 64.4 23 0.00049 38.0 7.6 67 65-135 99-166 (326)
160 COG0673 MviM Predicted dehydro 64.1 1.2E+02 0.0026 31.3 12.8 103 30-148 1-111 (342)
161 PRK05718 keto-hydroxyglutarate 63.6 1.1E+02 0.0023 30.8 11.8 94 48-147 8-103 (212)
162 PF09936 Methyltrn_RNA_4: SAM- 63.4 92 0.002 30.9 10.8 101 33-141 43-162 (185)
163 PF04321 RmlD_sub_bind: RmlD s 63.1 20 0.00042 37.0 6.7 79 33-116 1-101 (286)
164 cd04962 GT1_like_5 This family 63.0 82 0.0018 32.2 11.3 107 32-153 227-335 (371)
165 PLN02274 inosine-5'-monophosph 62.9 1.2E+02 0.0025 34.5 13.2 99 32-136 260-379 (505)
166 PF03808 Glyco_tran_WecB: Glyc 62.6 71 0.0015 30.6 10.0 80 30-116 46-134 (172)
167 PF07688 KaiA: KaiA domain; I 62.6 33 0.00072 35.7 8.0 79 34-117 2-80 (283)
168 TIGR01334 modD putative molybd 62.4 51 0.0011 34.5 9.6 95 34-135 158-261 (277)
169 COG0352 ThiE Thiamine monophos 62.0 1.8E+02 0.0039 29.3 13.4 72 57-135 105-184 (211)
170 TIGR01761 thiaz-red thiazoliny 61.8 86 0.0019 33.8 11.4 101 31-150 2-110 (343)
171 PRK14098 glycogen synthase; Pr 61.5 94 0.002 34.7 12.2 112 32-153 336-450 (489)
172 PRK13125 trpA tryptophan synth 61.4 1E+02 0.0022 31.2 11.4 89 45-138 118-215 (244)
173 TIGR00566 trpG_papA glutamine 60.8 24 0.00052 34.2 6.5 48 35-84 2-49 (188)
174 PRK00748 1-(5-phosphoribosyl)- 60.5 49 0.0011 32.7 8.8 68 64-136 147-219 (233)
175 cd06533 Glyco_transf_WecG_TagA 60.5 54 0.0012 31.4 8.8 79 31-116 45-132 (171)
176 cd03820 GT1_amsD_like This fam 60.3 1.7E+02 0.0037 28.5 13.2 110 32-155 209-320 (348)
177 COG3836 HpcH 2,4-dihydroxyhept 59.9 1.1E+02 0.0024 31.6 11.1 93 47-142 7-101 (255)
178 TIGR01305 GMP_reduct_1 guanosi 59.3 46 0.001 35.9 8.7 68 67-137 110-178 (343)
179 PRK12724 flagellar biosynthesi 59.1 1.1E+02 0.0025 34.0 12.0 102 32-136 252-366 (432)
180 PRK07896 nicotinate-nucleotide 58.7 87 0.0019 33.1 10.5 70 59-135 203-272 (289)
181 cd01948 EAL EAL domain. This d 58.7 32 0.0007 33.2 7.0 92 47-141 136-238 (240)
182 PRK07649 para-aminobenzoate/an 58.6 12 0.00027 36.6 4.1 50 35-86 2-51 (195)
183 PF02581 TMP-TENI: Thiamine mo 58.5 84 0.0018 30.1 9.8 72 57-135 96-175 (180)
184 TIGR01306 GMP_reduct_2 guanosi 58.5 1.9E+02 0.0041 31.1 13.1 98 33-136 109-226 (321)
185 PLN02591 tryptophan synthase 58.3 29 0.00064 35.7 6.9 57 92-151 65-127 (250)
186 PRK05848 nicotinate-nucleotide 58.2 1.8E+02 0.0038 30.5 12.6 95 34-136 154-256 (273)
187 TIGR02082 metH 5-methyltetrahy 58.1 84 0.0018 39.3 11.8 103 32-138 732-846 (1178)
188 cd06346 PBP1_ABC_ligand_bindin 58.0 1.1E+02 0.0023 31.3 11.1 71 45-121 154-231 (312)
189 TIGR01037 pyrD_sub1_fam dihydr 58.0 1.4E+02 0.003 31.0 11.9 58 94-154 223-286 (300)
190 PRK06843 inosine 5-monophospha 57.8 1.9E+02 0.004 32.1 13.3 102 32-136 165-284 (404)
191 PRK15424 propionate catabolism 57.5 24 0.00053 40.2 6.7 129 58-198 111-257 (538)
192 cd03813 GT1_like_3 This family 57.4 1.1E+02 0.0025 33.6 11.8 108 32-154 324-442 (475)
193 PRK06843 inosine 5-monophospha 57.2 48 0.001 36.6 8.7 55 78-135 165-220 (404)
194 PRK13111 trpA tryptophan synth 57.1 39 0.00084 34.9 7.6 57 92-150 75-137 (258)
195 cd01573 modD_like ModD; Quinol 57.1 86 0.0019 32.6 10.2 70 60-136 188-257 (272)
196 cd03819 GT1_WavL_like This fam 56.6 2.3E+02 0.0049 28.6 13.1 108 32-152 216-328 (355)
197 cd00381 IMPDH IMPDH: The catal 55.3 1.6E+02 0.0035 31.3 12.1 101 32-136 106-225 (325)
198 cd06338 PBP1_ABC_ligand_bindin 55.2 1.5E+02 0.0032 30.5 11.6 67 44-116 157-230 (345)
199 PRK15427 colanic acid biosynth 55.2 2.3E+02 0.0051 30.6 13.6 108 32-153 253-369 (406)
200 PRK09490 metH B12-dependent me 55.1 1.1E+02 0.0024 38.5 12.1 103 32-138 751-865 (1229)
201 TIGR00696 wecB_tagA_cpsF bacte 54.8 80 0.0017 30.7 9.0 68 31-102 47-122 (177)
202 TIGR03449 mycothiol_MshA UDP-N 54.8 2.8E+02 0.006 29.1 14.1 108 33-154 253-368 (405)
203 COG0313 Predicted methyltransf 54.7 75 0.0016 33.4 9.1 87 32-122 30-120 (275)
204 cd04723 HisA_HisF Phosphoribos 54.5 76 0.0016 31.9 9.1 68 64-136 147-217 (233)
205 PF01729 QRPTase_C: Quinolinat 54.4 50 0.0011 32.0 7.4 95 34-135 52-153 (169)
206 PRK03659 glutathione-regulated 54.3 87 0.0019 36.1 10.6 96 32-138 423-519 (601)
207 cd03818 GT1_ExpC_like This fam 54.1 2E+02 0.0044 30.4 12.7 77 64-154 290-366 (396)
208 PRK00994 F420-dependent methyl 54.1 84 0.0018 32.5 9.1 80 54-139 29-117 (277)
209 PRK09922 UDP-D-galactose:(gluc 54.0 1.5E+02 0.0033 30.9 11.6 111 32-155 210-325 (359)
210 PRK03562 glutathione-regulated 53.9 75 0.0016 36.8 10.0 94 32-136 423-517 (621)
211 KOG2550 IMP dehydrogenase/GMP 53.6 30 0.00064 38.3 6.2 99 31-134 201-317 (503)
212 PRK06774 para-aminobenzoate sy 53.5 18 0.00038 35.1 4.2 50 35-86 2-51 (191)
213 PRK06552 keto-hydroxyglutarate 53.4 1.7E+02 0.0037 29.3 11.3 95 49-147 7-104 (213)
214 cd04722 TIM_phosphate_binding 53.3 1.4E+02 0.0031 27.3 10.2 56 78-136 136-198 (200)
215 CHL00200 trpA tryptophan synth 53.1 41 0.00089 34.8 7.0 56 92-150 78-139 (263)
216 PRK02615 thiamine-phosphate py 52.8 2.9E+02 0.0063 30.0 13.6 68 61-135 246-320 (347)
217 COG0157 NadC Nicotinate-nucleo 52.6 1.3E+02 0.0028 31.7 10.5 93 34-134 160-259 (280)
218 cd04724 Tryptophan_synthase_al 52.6 62 0.0013 32.8 8.1 54 92-148 63-122 (242)
219 smart00052 EAL Putative diguan 52.3 71 0.0015 30.8 8.3 92 47-141 137-239 (241)
220 cd01836 FeeA_FeeB_like SGNH_hy 52.3 53 0.0012 30.8 7.2 83 32-116 2-114 (191)
221 PRK03372 ppnK inorganic polyph 52.2 1.4E+02 0.0031 31.7 11.0 101 34-154 7-128 (306)
222 PF00534 Glycos_transf_1: Glyc 51.9 1.9E+02 0.004 26.3 12.2 111 31-156 46-160 (172)
223 cd03801 GT1_YqgM_like This fam 51.7 2.4E+02 0.0052 27.5 12.7 108 32-154 230-341 (374)
224 PF14097 SpoVAE: Stage V sporu 51.6 1.4E+02 0.0031 29.3 9.9 75 35-112 3-86 (180)
225 TIGR00262 trpA tryptophan synt 51.6 60 0.0013 33.3 7.9 57 92-150 73-135 (256)
226 cd03785 GT1_MurG MurG is an N- 51.5 2.8E+02 0.0061 28.3 13.3 66 79-154 253-324 (350)
227 PRK07028 bifunctional hexulose 51.4 3.3E+02 0.0071 29.9 14.1 99 48-152 99-210 (430)
228 PRK12704 phosphodiesterase; Pr 51.3 17 0.00036 41.4 4.1 45 110-154 251-297 (520)
229 PRK05703 flhF flagellar biosyn 51.3 1.8E+02 0.004 32.1 12.1 93 32-125 251-349 (424)
230 cd03804 GT1_wbaZ_like This fam 50.9 1.5E+02 0.0032 30.4 10.9 106 33-155 222-327 (351)
231 PRK11359 cyclic-di-GMP phospho 50.8 1.2E+02 0.0026 35.2 11.1 102 46-150 681-793 (799)
232 PRK04302 triosephosphate isome 50.7 2.6E+02 0.0057 27.7 13.1 83 51-138 109-203 (223)
233 PRK00726 murG undecaprenyldiph 50.7 3.1E+02 0.0066 28.4 13.2 65 79-154 253-324 (357)
234 PRK13587 1-(5-phosphoribosyl)- 50.4 1E+02 0.0022 31.2 9.3 67 66-136 151-220 (234)
235 PRK08007 para-aminobenzoate sy 50.3 34 0.00074 33.2 5.7 50 35-86 2-51 (187)
236 TIGR02855 spore_yabG sporulati 50.3 1.4E+02 0.0031 31.4 10.2 53 31-85 103-160 (283)
237 PRK03378 ppnK inorganic polyph 49.8 83 0.0018 33.1 8.8 106 29-154 2-119 (292)
238 KOG1562 Spermidine synthase [A 49.7 55 0.0012 35.0 7.2 63 33-97 146-214 (337)
239 PRK05581 ribulose-phosphate 3- 49.7 1.9E+02 0.0041 28.1 10.9 84 51-137 104-198 (220)
240 TIGR01302 IMP_dehydrog inosine 49.5 2.3E+02 0.005 31.5 12.6 102 32-137 236-356 (450)
241 PRK07259 dihydroorotate dehydr 49.5 2.5E+02 0.0053 29.1 12.2 39 93-134 222-260 (301)
242 PRK04180 pyridoxal biosynthesi 49.3 52 0.0011 34.8 7.1 60 92-154 190-256 (293)
243 PRK10669 putative cation:proto 49.0 1.5E+02 0.0032 33.6 11.3 94 32-136 440-534 (558)
244 PRK13609 diacylglycerol glucos 48.6 2.8E+02 0.0061 29.1 12.7 106 32-154 230-338 (380)
245 PRK03708 ppnK inorganic polyph 48.3 1.3E+02 0.0029 31.2 10.0 99 33-154 1-112 (277)
246 PRK05637 anthranilate synthase 48.1 75 0.0016 31.6 7.8 49 33-84 2-50 (208)
247 PRK00025 lpxB lipid-A-disaccha 47.7 2.8E+02 0.0061 28.9 12.5 106 33-155 221-342 (380)
248 PRK02155 ppnK NAD(+)/NADH kina 47.5 2.2E+02 0.0047 29.9 11.4 104 31-154 4-119 (291)
249 TIGR02329 propionate_PrpR prop 47.5 3.4E+02 0.0074 31.0 13.8 27 172-198 214-250 (526)
250 PF01081 Aldolase: KDPG and KH 47.3 55 0.0012 32.5 6.6 93 49-146 2-95 (196)
251 PRK06096 molybdenum transport 47.0 85 0.0019 33.0 8.3 70 59-135 193-262 (284)
252 TIGR03590 PseG pseudaminic aci 46.9 1.3E+02 0.0029 30.8 9.7 75 33-119 32-114 (279)
253 TIGR01302 IMP_dehydrog inosine 46.8 73 0.0016 35.4 8.2 65 65-135 226-291 (450)
254 cd00429 RPE Ribulose-5-phospha 46.8 98 0.0021 29.7 8.2 58 79-137 128-194 (211)
255 PRK07428 nicotinate-nucleotide 46.8 2E+02 0.0044 30.3 11.0 95 34-135 168-269 (288)
256 TIGR01163 rpe ribulose-phospha 46.7 73 0.0016 30.6 7.4 86 48-137 96-193 (210)
257 TIGR01182 eda Entner-Doudoroff 46.5 1.8E+02 0.0039 29.1 10.1 91 50-146 3-95 (204)
258 cd02809 alpha_hydroxyacid_oxid 45.7 2.6E+02 0.0057 29.1 11.7 74 62-139 180-259 (299)
259 PRK06543 nicotinate-nucleotide 45.6 3.9E+02 0.0084 28.2 13.7 91 34-134 161-262 (281)
260 PRK12656 fructose-6-phosphate 45.4 1.5E+02 0.0032 30.2 9.4 77 66-154 71-157 (222)
261 PRK01911 ppnK inorganic polyph 45.3 1.2E+02 0.0026 31.9 9.2 101 34-154 2-120 (292)
262 PRK03692 putative UDP-N-acetyl 45.3 2E+02 0.0044 29.4 10.5 79 31-116 104-190 (243)
263 PF05582 Peptidase_U57: YabG p 45.2 1.6E+02 0.0035 31.2 9.8 53 31-85 104-161 (287)
264 PRK06978 nicotinate-nucleotide 45.1 2.3E+02 0.0051 30.0 11.1 91 34-134 178-274 (294)
265 TIGR00736 nifR3_rel_arch TIM-b 44.8 1.3E+02 0.0029 30.6 9.0 65 67-135 152-218 (231)
266 PRK14974 cell division protein 44.7 2.9E+02 0.0063 29.7 12.1 100 32-136 168-286 (336)
267 cd03825 GT1_wcfI_like This fam 44.6 74 0.0016 32.2 7.3 75 33-114 1-82 (365)
268 COG1927 Mtd Coenzyme F420-depe 44.4 1.6E+02 0.0036 30.0 9.3 80 53-138 28-116 (277)
269 TIGR03765 ICE_PFL_4695 integra 44.4 1.6E+02 0.0034 26.8 8.3 71 34-116 26-101 (105)
270 PF01596 Methyltransf_3: O-met 44.1 94 0.002 30.9 7.7 69 32-102 70-143 (205)
271 PRK08649 inosine 5-monophospha 43.8 3.7E+02 0.008 29.3 12.8 66 64-136 142-214 (368)
272 cd04949 GT1_gtfA_like This fam 43.6 2.6E+02 0.0057 28.8 11.4 57 91-155 290-346 (372)
273 TIGR00735 hisF imidazoleglycer 43.3 2.8E+02 0.006 28.1 11.2 81 64-150 156-248 (254)
274 cd05212 NAD_bind_m-THF_DH_Cycl 43.3 1.2E+02 0.0026 28.5 7.9 55 29-90 25-83 (140)
275 cd01827 sialate_O-acetylestera 43.3 80 0.0017 29.5 6.9 38 78-117 67-117 (188)
276 PRK13566 anthranilate synthase 43.2 78 0.0017 37.5 8.1 77 32-115 526-605 (720)
277 PLN02591 tryptophan synthase 43.1 3.6E+02 0.0077 27.8 12.0 100 34-138 109-219 (250)
278 PRK00811 spermidine synthase; 43.1 1.9E+02 0.0041 30.0 10.1 67 33-102 101-179 (283)
279 PLN02316 synthase/transferase 42.9 2.7E+02 0.0059 34.6 12.6 113 32-154 869-998 (1036)
280 TIGR02149 glgA_Coryne glycogen 42.7 3.9E+02 0.0085 27.6 12.6 108 33-154 230-352 (388)
281 PRK07114 keto-hydroxyglutarate 42.6 3.3E+02 0.0072 27.6 11.5 96 48-146 8-106 (222)
282 PRK05653 fabG 3-ketoacyl-(acyl 42.4 1.8E+02 0.004 27.7 9.4 85 28-116 1-90 (246)
283 TIGR00734 hisAF_rel hisA/hisF 42.3 1.6E+02 0.0035 29.5 9.2 69 63-136 141-212 (221)
284 PRK08072 nicotinate-nucleotide 42.1 3.1E+02 0.0067 28.7 11.5 92 34-135 160-258 (277)
285 COG2200 Rtn c-di-GMP phosphodi 42.1 2.7E+02 0.0058 28.4 10.9 114 32-148 121-249 (256)
286 PRK02083 imidazole glycerol ph 42.0 3.3E+02 0.0072 27.4 11.6 67 65-136 155-226 (253)
287 PRK06559 nicotinate-nucleotide 41.9 3.9E+02 0.0084 28.4 12.2 91 34-134 169-266 (290)
288 cd03806 GT1_ALG11_like This fa 41.6 3.4E+02 0.0074 29.4 12.3 107 32-153 273-391 (419)
289 cd04951 GT1_WbdM_like This fam 41.5 2.3E+02 0.0049 28.6 10.3 105 32-153 219-325 (360)
290 TIGR01303 IMP_DH_rel_1 IMP deh 41.2 1.1E+02 0.0025 34.3 8.7 68 63-135 224-292 (475)
291 PRK05567 inosine 5'-monophosph 41.1 1.1E+02 0.0025 34.2 8.7 65 66-135 230-295 (486)
292 cd03795 GT1_like_4 This family 41.1 3.9E+02 0.0084 26.8 14.3 110 32-155 218-333 (357)
293 cd03313 enolase Enolase: Enola 40.8 2.1E+02 0.0046 31.4 10.5 102 39-144 210-342 (408)
294 cd04731 HisF The cyclase subun 40.4 1.7E+02 0.0037 29.2 9.1 70 62-136 26-99 (243)
295 TIGR01163 rpe ribulose-phospha 40.3 2.8E+02 0.006 26.6 10.3 53 92-147 43-96 (210)
296 TIGR02095 glgA glycogen/starch 40.2 5.1E+02 0.011 28.3 13.5 107 33-153 321-436 (473)
297 TIGR00078 nadC nicotinate-nucl 40.1 3E+02 0.0065 28.5 11.0 93 34-136 150-249 (265)
298 TIGR01306 GMP_reduct_2 guanosi 40.1 1.1E+02 0.0024 32.7 8.0 56 78-136 108-164 (321)
299 PRK06138 short chain dehydroge 40.0 3E+02 0.0065 26.6 10.6 84 30-115 3-88 (252)
300 PRK00654 glgA glycogen synthas 39.5 5.3E+02 0.011 28.3 13.5 108 32-153 311-427 (466)
301 PRK11889 flhF flagellar biosyn 39.5 4.1E+02 0.0089 29.8 12.3 55 32-86 269-328 (436)
302 cd05013 SIS_RpiR RpiR-like pro 39.4 2.6E+02 0.0055 24.3 10.5 82 35-121 18-100 (139)
303 PRK14722 flhF flagellar biosyn 39.3 2.6E+02 0.0056 30.6 10.8 88 33-122 168-261 (374)
304 cd05844 GT1_like_7 Glycosyltra 39.2 4.3E+02 0.0093 26.9 13.8 109 32-154 219-336 (367)
305 PLN02935 Bifunctional NADH kin 39.2 2.9E+02 0.0062 31.6 11.3 108 27-154 189-318 (508)
306 COG0159 TrpA Tryptophan syntha 39.1 1E+02 0.0023 32.2 7.3 52 92-145 80-137 (265)
307 cd06282 PBP1_GntR_like_2 Ligan 39.0 1.9E+02 0.0041 27.9 9.0 63 46-116 19-87 (266)
308 PRK05670 anthranilate synthase 39.0 42 0.00091 32.4 4.3 48 35-84 2-49 (189)
309 TIGR00262 trpA tryptophan synt 38.9 4.5E+02 0.0097 27.0 13.1 101 35-138 119-228 (256)
310 PRK06512 thiamine-phosphate py 38.9 2.7E+02 0.0058 28.0 10.1 67 62-135 118-190 (221)
311 PRK05096 guanosine 5'-monophos 38.8 1.2E+02 0.0026 32.9 8.0 54 78-134 122-176 (346)
312 PRK01362 putative translaldola 38.6 1.7E+02 0.0037 29.4 8.7 85 50-138 95-185 (214)
313 cd06273 PBP1_GntR_like_1 This 38.4 1.9E+02 0.0041 28.1 9.0 62 45-115 18-85 (268)
314 PRK01033 imidazole glycerol ph 38.4 1.8E+02 0.004 29.7 9.1 69 64-136 153-225 (258)
315 cd06329 PBP1_SBP_like_3 Peripl 38.4 3.7E+02 0.0081 27.7 11.6 67 44-116 159-235 (342)
316 TIGR01133 murG undecaprenyldip 38.4 4.5E+02 0.0097 26.8 13.5 66 79-154 251-321 (348)
317 TIGR00642 mmCoA_mut_beta methy 38.3 2.4E+02 0.0053 32.9 10.9 109 32-148 494-612 (619)
318 TIGR01304 IMP_DH_rel_2 IMP deh 38.2 5.1E+02 0.011 28.4 12.7 65 64-135 143-214 (369)
319 cd00381 IMPDH IMPDH: The catal 38.0 1.7E+02 0.0037 31.1 9.1 65 67-136 97-162 (325)
320 PRK00941 acetyl-CoA decarbonyl 37.9 5.1E+02 0.011 31.2 13.5 121 23-152 228-381 (781)
321 PRK05565 fabG 3-ketoacyl-(acyl 37.9 3E+02 0.0065 26.4 10.2 83 30-116 3-91 (247)
322 PRK14569 D-alanyl-alanine synt 37.8 1.4E+02 0.0031 30.9 8.3 43 43-87 22-65 (296)
323 PRK10060 RNase II stability mo 37.8 2.4E+02 0.0053 32.6 11.0 102 46-150 544-656 (663)
324 cd06348 PBP1_ABC_ligand_bindin 37.5 3.1E+02 0.0068 28.1 10.8 64 43-112 152-222 (344)
325 cd00956 Transaldolase_FSA Tran 37.5 1.7E+02 0.0038 29.1 8.5 75 61-138 108-186 (211)
326 PRK15490 Vi polysaccharide bio 37.3 7.2E+02 0.016 29.0 14.2 102 32-148 429-532 (578)
327 cd01424 MGS_CPS_II Methylglyox 37.2 2.8E+02 0.0061 24.1 9.5 26 37-62 7-32 (110)
328 PLN02775 Probable dihydrodipic 37.2 5.3E+02 0.011 27.3 15.1 104 31-141 10-138 (286)
329 TIGR01859 fruc_bis_ald_ fructo 37.1 1.6E+02 0.0034 30.8 8.5 68 62-135 152-228 (282)
330 TIGR01305 GMP_reduct_1 guanosi 36.9 5.9E+02 0.013 27.7 12.9 103 32-137 121-241 (343)
331 PRK13143 hisH imidazole glycer 36.9 1.6E+02 0.0034 28.8 8.0 44 33-84 1-44 (200)
332 PF01993 MTD: methylene-5,6,7, 36.8 93 0.002 32.3 6.4 63 72-140 55-117 (276)
333 cd06341 PBP1_ABC_ligand_bindin 36.7 3.1E+02 0.0066 28.1 10.6 71 45-121 150-227 (341)
334 KOG4175 Tryptophan synthase al 36.7 95 0.0021 31.5 6.3 40 107-146 94-139 (268)
335 PRK13398 3-deoxy-7-phosphohept 36.6 4.7E+02 0.01 27.2 11.7 86 48-137 126-232 (266)
336 PRK07765 para-aminobenzoate sy 36.6 1.1E+02 0.0025 30.3 7.1 79 33-115 1-83 (214)
337 cd06382 PBP1_iGluR_Kainate N-t 36.5 3.1E+02 0.0068 28.0 10.6 81 33-117 130-218 (327)
338 PLN02274 inosine-5'-monophosph 36.5 1.6E+02 0.0034 33.5 8.9 68 64-136 248-316 (505)
339 PRK07107 inosine 5-monophospha 36.5 2.1E+02 0.0045 32.5 9.8 102 32-136 254-380 (502)
340 PRK10909 rsmD 16S rRNA m(2)G96 36.4 2.2E+02 0.0047 28.2 8.9 82 32-118 76-161 (199)
341 PRK10742 putative methyltransf 36.2 1.7E+02 0.0036 30.4 8.2 58 32-92 110-178 (250)
342 cd06345 PBP1_ABC_ligand_bindin 36.1 4.2E+02 0.0092 27.2 11.5 66 46-117 162-234 (344)
343 PRK02290 3-dehydroquinate synt 36.1 2.8E+02 0.0061 30.1 10.1 69 78-151 88-158 (344)
344 cd04736 MDH_FMN Mandelate dehy 36.0 3.1E+02 0.0067 29.9 10.7 87 47-139 227-321 (361)
345 COG1152 CdhA CO dehydrogenase/ 36.0 2.4E+02 0.0053 32.9 10.0 123 23-154 227-381 (772)
346 TIGR00064 ftsY signal recognit 35.9 3.6E+02 0.0078 27.9 10.8 54 32-87 100-163 (272)
347 cd01840 SGNH_hydrolase_yrhL_li 35.9 2.2E+02 0.0048 26.0 8.5 82 35-117 2-88 (150)
348 PLN02335 anthranilate synthase 35.8 53 0.0012 32.9 4.6 78 32-114 18-97 (222)
349 cd04731 HisF The cyclase subun 35.7 2.5E+02 0.0055 28.0 9.5 65 66-136 152-222 (243)
350 cd01825 SGNH_hydrolase_peri1 S 35.4 81 0.0018 29.3 5.5 80 34-117 1-105 (189)
351 PRK06106 nicotinate-nucleotide 35.4 5.4E+02 0.012 27.1 12.0 65 60-134 199-263 (281)
352 PRK10538 malonic semialdehyde 35.1 3.2E+02 0.007 26.7 10.0 79 34-116 2-82 (248)
353 TIGR01361 DAHP_synth_Bsub phos 35.1 3.7E+02 0.008 27.7 10.7 72 65-140 148-233 (260)
354 TIGR03128 RuMP_HxlA 3-hexulose 35.0 4.2E+02 0.0091 25.5 14.2 85 46-136 92-185 (206)
355 PF11072 DUF2859: Protein of u 34.9 2E+02 0.0044 27.4 7.9 71 33-115 63-138 (142)
356 PF00218 IGPS: Indole-3-glycer 34.9 3E+02 0.0064 28.5 9.9 88 46-137 148-238 (254)
357 PRK06731 flhF flagellar biosyn 34.8 4.5E+02 0.0098 27.3 11.3 54 33-87 104-163 (270)
358 cd01575 PBP1_GntR Ligand-bindi 34.6 2.5E+02 0.0053 27.2 9.0 62 46-116 19-86 (268)
359 PF01959 DHQS: 3-dehydroquinat 34.6 4E+02 0.0086 29.1 11.0 69 79-151 97-167 (354)
360 PRK05557 fabG 3-ketoacyl-(acyl 34.4 4.1E+02 0.0089 25.3 10.5 84 29-116 2-91 (248)
361 PLN02898 HMP-P kinase/thiamin- 34.3 2.9E+02 0.0063 31.0 10.5 65 61-132 396-467 (502)
362 cd01841 NnaC_like NnaC (CMP-Ne 34.3 99 0.0021 28.5 5.9 80 34-116 2-98 (174)
363 cd06295 PBP1_CelR Ligand bindi 34.3 2.2E+02 0.0047 28.0 8.6 62 45-116 29-95 (275)
364 cd06326 PBP1_STKc_like Type I 34.2 5E+02 0.011 26.3 11.6 65 46-116 154-225 (336)
365 cd06318 PBP1_ABC_sugar_binding 34.2 2.7E+02 0.0058 27.4 9.3 63 46-116 19-88 (282)
366 cd03807 GT1_WbnK_like This fam 34.1 4.6E+02 0.01 25.7 11.2 64 79-154 269-332 (365)
367 CHL00101 trpG anthranilate syn 34.1 55 0.0012 31.7 4.3 49 35-85 2-50 (190)
368 cd03816 GT1_ALG1_like This fam 34.1 5.6E+02 0.012 27.6 12.4 107 32-154 269-381 (415)
369 PF00290 Trp_syntA: Tryptophan 34.1 78 0.0017 32.9 5.5 52 92-145 73-130 (259)
370 cd03812 GT1_CapH_like This fam 34.0 4.3E+02 0.0093 26.6 11.0 109 32-156 223-333 (358)
371 PLN02366 spermidine synthase 33.9 2.8E+02 0.006 29.4 9.7 69 33-103 116-195 (308)
372 cd06279 PBP1_LacI_like_3 Ligan 33.9 1.8E+02 0.0039 28.9 8.1 64 44-116 22-87 (283)
373 PRK13111 trpA tryptophan synth 33.8 4.2E+02 0.0092 27.3 10.9 99 34-138 120-229 (258)
374 PRK04539 ppnK inorganic polyph 33.7 4.6E+02 0.0099 27.7 11.3 104 31-154 4-124 (296)
375 cd04740 DHOD_1B_like Dihydroor 33.6 5.5E+02 0.012 26.4 12.7 38 94-134 220-257 (296)
376 cd03802 GT1_AviGT4_like This f 33.5 4.9E+02 0.011 25.9 12.6 106 32-153 197-307 (335)
377 cd06323 PBP1_ribose_binding Pe 33.5 2.8E+02 0.006 26.8 9.2 62 46-116 19-88 (268)
378 PLN02716 nicotinate-nucleotide 33.4 5.4E+02 0.012 27.6 11.7 95 34-134 172-287 (308)
379 TIGR01232 lacD tagatose 1,6-di 33.3 1.1E+02 0.0024 32.9 6.5 44 94-137 227-276 (325)
380 PRK12290 thiE thiamine-phospha 33.3 6.1E+02 0.013 28.5 12.5 94 57-154 301-414 (437)
381 cd06296 PBP1_CatR_like Ligand- 33.2 2.5E+02 0.0055 27.3 8.9 63 45-116 18-86 (270)
382 PRK12726 flagellar biosynthesi 33.1 6E+02 0.013 28.3 12.3 103 32-136 234-349 (407)
383 TIGR03572 WbuZ glycosyl amidat 33.0 2.8E+02 0.0061 27.4 9.3 71 62-137 29-103 (232)
384 COG0300 DltE Short-chain dehyd 33.0 2.6E+02 0.0057 29.1 9.2 82 30-115 4-91 (265)
385 PRK09140 2-dehydro-3-deoxy-6-p 33.0 3.6E+02 0.0079 26.8 9.9 77 50-135 98-177 (206)
386 PRK06552 keto-hydroxyglutarate 32.9 2.5E+02 0.0055 28.1 8.8 85 41-134 94-180 (213)
387 PRK06769 hypothetical protein; 32.8 4.3E+02 0.0094 25.0 10.2 86 49-138 37-138 (173)
388 cd03799 GT1_amsK_like This is 32.8 5.2E+02 0.011 25.9 11.8 110 32-155 210-328 (355)
389 PRK12727 flagellar biosynthesi 32.8 3.7E+02 0.008 31.1 11.0 53 33-86 381-436 (559)
390 PRK09016 quinolinate phosphori 32.8 3.3E+02 0.0071 29.0 10.0 67 59-135 212-278 (296)
391 PF00478 IMPDH: IMP dehydrogen 32.7 1.8E+02 0.004 31.5 8.3 73 59-136 103-176 (352)
392 PRK04885 ppnK inorganic polyph 32.6 1.6E+02 0.0035 30.6 7.5 58 78-154 35-93 (265)
393 TIGR03704 PrmC_rel_meth putati 32.6 4.9E+02 0.011 26.4 11.1 52 32-86 110-161 (251)
394 cd01568 QPRTase_NadC Quinolina 32.5 5.4E+02 0.012 26.6 11.5 94 34-136 153-254 (269)
395 PLN02275 transferase, transfer 32.5 5.4E+02 0.012 27.1 11.8 104 32-151 261-370 (371)
396 PRK11557 putative DNA-binding 32.4 3.5E+02 0.0077 27.4 10.1 86 32-123 130-217 (278)
397 cd05014 SIS_Kpsf KpsF-like pro 32.2 1.8E+02 0.0038 25.6 6.9 90 39-139 9-100 (128)
398 PF14606 Lipase_GDSL_3: GDSL-l 32.2 47 0.001 32.6 3.4 46 66-116 49-101 (178)
399 PRK06935 2-deoxy-D-gluconate 3 32.2 4.8E+02 0.01 25.5 10.8 83 30-116 13-99 (258)
400 cd06292 PBP1_LacI_like_10 Liga 32.0 2.2E+02 0.0047 27.8 8.2 65 46-116 19-91 (273)
401 PRK05742 nicotinate-nucleotide 32.0 4.5E+02 0.0097 27.6 10.8 67 60-136 194-260 (277)
402 cd06342 PBP1_ABC_LIVBP_like Ty 31.9 5.5E+02 0.012 25.9 12.5 63 46-114 153-222 (334)
403 PHA03237 envelope glycoprotein 31.8 29 0.00062 38.5 2.0 34 474-507 345-380 (424)
404 PRK04338 N(2),N(2)-dimethylgua 31.8 2.8E+02 0.006 30.3 9.6 78 33-120 82-162 (382)
405 cd00331 IGPS Indole-3-glycerol 31.7 4.6E+02 0.01 25.6 10.5 51 82-135 49-99 (217)
406 cd06281 PBP1_LacI_like_5 Ligan 31.7 3.4E+02 0.0073 26.5 9.5 64 45-116 18-87 (269)
407 TIGR02634 xylF D-xylose ABC tr 31.6 2.2E+02 0.0048 29.0 8.5 65 44-116 16-87 (302)
408 cd01143 YvrC Periplasmic bindi 31.6 1.2E+02 0.0026 28.4 6.1 33 78-118 60-92 (195)
409 PF00977 His_biosynth: Histidi 31.5 2.7E+02 0.0058 27.9 8.8 70 63-136 147-219 (229)
410 PRK06806 fructose-bisphosphate 31.5 2.5E+02 0.0055 29.4 8.9 70 61-135 151-228 (281)
411 PRK06015 keto-hydroxyglutarate 31.4 3.7E+02 0.008 26.9 9.6 84 59-147 9-92 (201)
412 PRK04457 spermidine synthase; 31.2 4.9E+02 0.011 26.6 10.9 69 32-103 90-166 (262)
413 PRK08185 hypothetical protein; 31.1 2.3E+02 0.0049 29.9 8.4 66 62-134 148-225 (283)
414 PRK06849 hypothetical protein; 31.0 3.5E+02 0.0077 28.9 10.2 39 31-69 3-41 (389)
415 PRK01395 V-type ATP synthase s 31.0 3.9E+02 0.0084 23.9 9.0 76 31-116 2-78 (104)
416 COG1737 RpiR Transcriptional r 30.7 3E+02 0.0065 28.4 9.3 86 31-122 131-218 (281)
417 PRK07455 keto-hydroxyglutarate 30.6 4.6E+02 0.0099 25.5 10.0 91 48-142 5-96 (187)
418 cd01829 SGNH_hydrolase_peri2 S 30.6 2.7E+02 0.0059 26.1 8.4 55 34-90 1-71 (200)
419 PRK09860 putative alcohol dehy 30.6 3.1E+02 0.0067 29.7 9.7 64 33-101 32-108 (383)
420 cd01141 TroA_d Periplasmic bin 30.6 1.4E+02 0.0031 28.0 6.4 32 78-116 69-100 (186)
421 TIGR01214 rmlD dTDP-4-dehydror 30.6 3.7E+02 0.0081 26.7 9.8 53 34-88 1-60 (287)
422 cd01541 PBP1_AraR Ligand-bindi 30.5 3.2E+02 0.0069 26.7 9.1 67 44-116 17-91 (273)
423 COG0269 SgbH 3-hexulose-6-phos 30.5 6E+02 0.013 25.9 12.6 115 32-151 83-211 (217)
424 KOG1601 GATA-4/5/6 transcripti 30.5 14 0.00029 36.3 -0.7 42 471-512 289-330 (340)
425 cd03805 GT1_ALG2_like This fam 30.4 6.3E+02 0.014 26.1 12.1 108 32-154 245-364 (392)
426 PF06925 MGDG_synth: Monogalac 30.3 2E+02 0.0043 27.1 7.3 61 68-136 81-143 (169)
427 cd06358 PBP1_NHase Type I peri 30.3 4.4E+02 0.0096 27.0 10.5 77 34-116 134-221 (333)
428 PRK01372 ddl D-alanine--D-alan 30.2 1.1E+02 0.0024 31.3 6.0 53 31-85 3-63 (304)
429 cd01833 XynB_like SGNH_hydrola 30.2 32 0.0007 31.2 1.8 37 78-116 40-87 (157)
430 PRK09072 short chain dehydroge 30.1 5.4E+02 0.012 25.3 10.9 40 29-68 2-42 (263)
431 TIGR02472 sucr_P_syn_N sucrose 30.1 7.4E+02 0.016 26.8 12.7 80 65-154 327-406 (439)
432 TIGR00417 speE spermidine synt 30.0 4.7E+02 0.01 26.7 10.5 68 32-102 96-174 (270)
433 PF04131 NanE: Putative N-acet 29.9 1.4E+02 0.0031 29.8 6.3 71 56-136 45-117 (192)
434 KOG1203 Predicted dehydrogenas 29.9 1.3E+02 0.0029 33.3 6.7 74 29-104 76-150 (411)
435 PF00563 EAL: EAL domain; Int 29.8 78 0.0017 30.4 4.5 85 46-134 138-228 (236)
436 cd04732 HisA HisA. Phosphorib 29.7 4E+02 0.0086 26.1 9.6 68 64-136 147-218 (234)
437 PRK07807 inosine 5-monophospha 29.6 1.7E+02 0.0037 33.0 7.7 67 64-135 227-294 (479)
438 PF07652 Flavi_DEAD: Flaviviru 29.6 1.9E+02 0.0042 27.7 6.9 86 31-117 32-135 (148)
439 TIGR00308 TRM1 tRNA(guanine-26 29.6 3.8E+02 0.0082 29.3 10.1 92 33-132 70-168 (374)
440 PF06283 ThuA: Trehalose utili 29.5 1.7E+02 0.0037 28.6 7.0 74 34-115 1-88 (217)
441 PRK04128 1-(5-phosphoribosyl)- 29.4 2.7E+02 0.0058 28.1 8.4 66 64-136 144-210 (228)
442 PRK08883 ribulose-phosphate 3- 29.3 3.6E+02 0.0078 27.1 9.3 86 48-137 98-195 (220)
443 cd01537 PBP1_Repressors_Sugar_ 29.3 3.4E+02 0.0074 25.7 8.9 66 44-117 17-88 (264)
444 PRK07764 DNA polymerase III su 29.3 1.7E+02 0.0038 35.2 8.1 74 78-154 120-194 (824)
445 cd04726 KGPDC_HPS 3-Keto-L-gul 29.3 2.3E+02 0.005 27.1 7.7 74 63-140 10-87 (202)
446 cd01540 PBP1_arabinose_binding 29.2 3E+02 0.0065 27.2 8.8 63 46-115 19-86 (289)
447 PRK08999 hypothetical protein; 29.2 2.6E+02 0.0057 28.9 8.6 68 61-135 232-306 (312)
448 TIGR01949 AroFGH_arch predicte 29.2 3.8E+02 0.0083 27.2 9.6 51 78-135 169-225 (258)
449 PRK06895 putative anthranilate 29.2 78 0.0017 30.6 4.4 31 33-63 2-32 (190)
450 TIGR03128 RuMP_HxlA 3-hexulose 29.0 2.7E+02 0.0059 26.8 8.2 76 61-140 7-86 (206)
451 cd02810 DHOD_DHPD_FMN Dihydroo 29.0 5.2E+02 0.011 26.4 10.7 39 94-134 230-269 (289)
452 COG3684 LacD Tagatose-1,6-bisp 28.9 1.1E+02 0.0025 32.0 5.6 60 79-138 198-264 (306)
453 COG2265 TrmA SAM-dependent met 28.9 3.2E+02 0.007 30.4 9.6 81 29-116 312-396 (432)
454 PRK07067 sorbitol dehydrogenas 28.8 5.6E+02 0.012 25.0 10.6 80 32-115 6-87 (257)
455 cd06298 PBP1_CcpA_like Ligand- 28.8 3.1E+02 0.0067 26.5 8.7 67 41-116 11-86 (268)
456 COG1091 RfbD dTDP-4-dehydrorha 28.8 1.3E+02 0.0029 31.6 6.2 55 34-91 2-63 (281)
457 cd06301 PBP1_rhizopine_binding 28.7 3E+02 0.0066 26.8 8.6 64 46-116 19-89 (272)
458 PRK12723 flagellar biosynthesi 28.5 8.1E+02 0.018 26.9 12.5 102 32-136 206-319 (388)
459 PRK02645 ppnK inorganic polyph 28.5 3.8E+02 0.0082 28.3 9.7 104 31-153 2-114 (305)
460 cd06267 PBP1_LacI_sugar_bindin 28.4 4.2E+02 0.0092 25.1 9.4 63 46-117 19-87 (264)
461 cd06366 PBP1_GABAb_receptor Li 28.4 3.4E+02 0.0074 27.9 9.3 56 45-104 152-216 (350)
462 PRK13608 diacylglycerol glucos 28.3 7.6E+02 0.016 26.4 12.5 63 79-154 274-338 (391)
463 cd01572 QPRTase Quinolinate ph 28.3 6.1E+02 0.013 26.3 11.0 91 34-134 154-251 (268)
464 PTZ00314 inosine-5'-monophosph 28.2 2.5E+02 0.0054 31.8 8.7 55 78-135 253-308 (495)
465 KOG3040 Predicted sugar phosph 28.2 77 0.0017 32.4 4.1 64 33-96 40-107 (262)
466 cd06330 PBP1_Arsenic_SBP_like 28.2 3.7E+02 0.008 27.6 9.5 79 34-116 140-231 (346)
467 cd06315 PBP1_ABC_sugar_binding 28.2 3.1E+02 0.0066 27.3 8.7 63 46-116 20-89 (280)
468 PRK06172 short chain dehydroge 28.1 4.9E+02 0.011 25.3 9.9 82 31-116 6-92 (253)
469 PRK14723 flhF flagellar biosyn 28.1 6E+02 0.013 30.6 12.0 101 33-137 216-331 (767)
470 cd06272 PBP1_hexuronate_repres 28.1 3.3E+02 0.0071 26.4 8.7 61 46-115 19-81 (261)
471 cd01542 PBP1_TreR_like Ligand- 28.0 2.7E+02 0.0059 26.8 8.1 64 44-116 17-86 (259)
472 PLN02778 3,5-epimerase/4-reduc 27.9 2.5E+02 0.0054 28.9 8.2 31 31-61 8-38 (298)
473 PRK02649 ppnK inorganic polyph 27.9 5E+02 0.011 27.6 10.4 101 34-154 3-124 (305)
474 PRK08340 glucose-1-dehydrogena 27.9 4.5E+02 0.0098 25.8 9.7 78 34-116 2-84 (259)
475 TIGR00875 fsa_talC_mipB fructo 27.7 3E+02 0.0064 27.7 8.3 84 51-138 96-186 (213)
476 TIGR02085 meth_trns_rumB 23S r 27.7 4.1E+02 0.0089 28.7 10.0 87 33-129 256-346 (374)
477 cd00532 MGS-like MGS-like doma 27.7 4.1E+02 0.0088 23.4 8.4 23 39-61 8-30 (112)
478 PRK05437 isopentenyl pyrophosp 27.7 6.6E+02 0.014 27.0 11.5 89 46-139 176-293 (352)
479 TIGR01832 kduD 2-deoxy-D-gluco 27.7 5.6E+02 0.012 24.7 10.6 82 31-116 4-88 (248)
480 PRK12826 3-ketoacyl-(acyl-carr 27.6 4.9E+02 0.011 24.9 9.8 81 32-116 6-91 (251)
481 TIGR03061 pip_yhgE_Nterm YhgE/ 27.6 1.9E+02 0.0041 27.1 6.7 50 31-83 42-101 (164)
482 PRK14099 glycogen synthase; Pr 27.6 5.1E+02 0.011 28.9 11.0 66 79-151 370-441 (485)
483 PRK15320 transcriptional activ 27.6 1.5E+02 0.0033 30.1 6.0 98 34-137 3-102 (251)
484 PF03102 NeuB: NeuB family; I 27.6 2.3E+02 0.005 29.1 7.6 83 44-134 57-143 (241)
485 PRK08862 short chain dehydroge 27.6 5.3E+02 0.012 25.3 10.1 84 29-116 2-91 (227)
486 KOG4571 Activating transcripti 27.5 80 0.0017 33.4 4.3 21 469-489 229-249 (294)
487 PRK03522 rumB 23S rRNA methylu 27.4 3.5E+02 0.0077 28.3 9.2 75 33-116 196-274 (315)
488 cd06374 PBP1_mGluR_groupI Liga 27.2 2.9E+02 0.0064 30.3 9.0 10 47-56 176-185 (472)
489 PRK01231 ppnK inorganic polyph 27.2 5E+02 0.011 27.3 10.3 101 34-154 6-118 (295)
490 PRK08649 inosine 5-monophospha 27.2 4.6E+02 0.01 28.6 10.2 86 47-136 178-284 (368)
491 cd04506 SGNH_hydrolase_YpmR_li 27.1 2.8E+02 0.006 26.3 7.8 37 78-116 68-129 (204)
492 PRK07035 short chain dehydroge 27.1 5.9E+02 0.013 24.7 11.1 86 29-116 5-93 (252)
493 PLN02605 monogalactosyldiacylg 27.0 6.5E+02 0.014 26.7 11.3 63 79-154 283-347 (382)
494 cd06285 PBP1_LacI_like_7 Ligan 27.0 3.2E+02 0.007 26.6 8.5 61 46-115 19-85 (265)
495 PRK11829 biofilm formation reg 27.0 5.2E+02 0.011 29.5 11.2 98 46-148 542-652 (660)
496 cd08556 GDPD Glycerophosphodie 26.9 4.9E+02 0.011 24.1 9.3 51 78-136 137-187 (189)
497 cd03811 GT1_WabH_like This fam 26.9 5.9E+02 0.013 24.7 10.6 62 79-150 264-325 (353)
498 PLN02823 spermine synthase 26.9 2.5E+02 0.0053 30.2 8.0 55 32-89 127-187 (336)
499 PRK15482 transcriptional regul 26.9 4E+02 0.0086 27.2 9.4 85 32-122 137-223 (285)
500 cd06284 PBP1_LacI_like_6 Ligan 26.8 3.5E+02 0.0075 26.1 8.6 61 45-115 18-84 (267)
No 1
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.95 E-value=3.7e-27 Score=245.91 Aligned_cols=191 Identities=23% Similarity=0.345 Sum_probs=144.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g-ye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++|||||||+..+|..|+++|...+ ++ |.++.|+.+|++++... .||||+||++||.|||+++|++|++. .++
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~--~PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL--KPDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc--CCCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 4799999999999999999999998 55 45999999999999887 89999999999999999999999985 789
Q ss_pred eEEEEecC--CCHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCCcc
Q 008655 110 PVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLRT--NELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNST 185 (558)
Q Consensus 110 PVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~~--eeL~~~L~~llr~~r~~~l~~r~~~~~~~~lvgssp~~a~s~~t 185 (558)
||||+|+. ...+...+|+++||.||+.||... ..+....+.+..+.+............
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~~~~~~l~~----------------- 138 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAARQNRKSLRT----------------- 138 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHHHHHHHHHHHhhcccccccc-----------------
Confidence 99999974 447889999999999999999752 333333333333332222111110000
Q ss_pred eeeecCCccccccCCCCCCCCCCCccccCCCccEEEEEccccchhhccccccccCCCCCC-ccccccCCCCCCCCc
Q 008655 186 TLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVP-GISDRRTGQFSAGPK 260 (558)
Q Consensus 186 vLi~ges~~~~~~~~~~~l~~~~~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~~~~~l~~~~~ 260 (558)
-.. ...+ ............++|+||+|||||.||+.| |..||+||| |+++.| |||++|+
T Consensus 139 ----~~~-------~~~~--~~~~~~~~~~~~~iV~IGaStGGp~AL~~i-l~~lP~~~p~pvvIvQ--HMp~gFt 198 (350)
T COG2201 139 ----PEP-------PRAP--AFRPVKPGPAARKIVAIGASTGGPAALRAV-LPALPADFPAPVVIVQ--HMPPGFT 198 (350)
T ss_pred ----cCC-------CCcc--ccCCCCCCCCCccEEEEEeCCCCHHHHHHH-HHhCCCCCCCCEEEEe--cCChhhh
Confidence 000 0000 000111133567899999999999999999 999999999 999999 9999997
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-24 Score=234.68 Aligned_cols=166 Identities=27% Similarity=0.458 Sum_probs=146.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++.+||||||++.+|..+...|+..||.|..+.++.+|++++... .|||||+|+.||++||++++++|++.. +.+|
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~p 78 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRD--PDLP 78 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhC--CCCC
Confidence 356799999999999999999999999999999999999999876 799999999999999999999999875 8999
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhh---hhccccccccccCCCC---------
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAE---KNILSYDFDLVASDPS--------- 178 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~l~~---r~~~~~~~~lvgssp~--------- 178 (558)
|||+|++.+.+.+++|++.||.|||.|||+.+.|...+++.+..++...... .........++|.++.
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~ 158 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIA 158 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998766543221 1112345568888887
Q ss_pred -CCCCCcceeeecCCccccccCC
Q 008655 179 -DANTNSTTLFSDDTDDKSRRST 200 (558)
Q Consensus 179 -~a~s~~tvLi~ges~~~~~~~~ 200 (558)
+|.++++|||.||+++.+...+
T Consensus 159 kvA~s~a~VLI~GESGtGKElvA 181 (464)
T COG2204 159 KVAPSDASVLITGESGTGKELVA 181 (464)
T ss_pred HHhCCCCCEEEECCCCCcHHHHH
Confidence 6889999999999999876533
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=8.5e-21 Score=189.32 Aligned_cols=120 Identities=28% Similarity=0.458 Sum_probs=112.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++.++..|...|+..||+|..+.++.+|++.+.. . ||+||+|+.||++||+++|++|++. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 489999999999999999999999999999999999999864 3 9999999999999999999999965 45778999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|+|+.++....+.++++||+|||+|||++.||.++++.++++..
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 99999999999999999999999999999999999999987653
No 4
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.82 E-value=4.5e-19 Score=184.77 Aligned_cols=187 Identities=18% Similarity=0.230 Sum_probs=136.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 33 VRILLCDNDSNSSDAVFSLLV-KCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~-~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++||||||++..+..+..+|. ..+++|. .+.++.++++.+... .||+|++|+.||+|+|++++++|+.. .++|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~---~~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAE---RPCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHH---CCCc
Confidence 489999999999999999995 5578876 789999999999865 79999999999999999999999874 4689
Q ss_pred EEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCCcce
Q 008655 111 VIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTT 186 (558)
Q Consensus 111 VIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~llr~~r~~~l~~r~~~~~~~~lvgssp~~a~s~~tv 186 (558)
||++++... .....++++.||.+||.||+. ...+......++.+.+........ .+...
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~~~~-----------~~~~~------ 138 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRLLGR-----------RLAPA------ 138 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhcccc-----------cCCCc------
Confidence 999998643 567889999999999999992 222222333333332221110000 00000
Q ss_pred eeecCCccccccCCCCCCCCCCCccccCCCccEEEEEccccchhhccccccccCCCCCC-ccccccCCCCCCCCc
Q 008655 187 LFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVP-GISDRRTGQFSAGPK 260 (558)
Q Consensus 187 Li~ges~~~~~~~~~~~l~~~~~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~~~~~l~~~~~ 260 (558)
. ..... . .+ .......+++||+||||++||..+ |..||++++ ++++.| ||++.+.
T Consensus 139 -------~--~~~~~-~----~~--~~~~~~~v~~ig~s~gg~~al~~l-l~~l~~~~~~~ivivq--h~~~~~~ 194 (337)
T PRK12555 139 -------A--APAAA-S----AA--PFRTTPRLVAIGASAGGPAALAVL-LGGLPADFPAAIVIVQ--HVDAAFA 194 (337)
T ss_pred -------c--cCCCC-C----CC--CCCCCceEEEEEeCcCCHHHHHHH-HHhCCCCCCCcEEEEE--cCCCCch
Confidence 0 00000 0 00 001224789999999999999999 999999999 699998 9998874
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.82 E-value=9.4e-20 Score=196.88 Aligned_cols=122 Identities=20% Similarity=0.420 Sum_probs=113.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVK--CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~--~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
|.+||||||++.+|+.|+.++.. .|++|+ +|.||++|++++.+. .|||||+||.||+|||+++++.|++.. +.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~--p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQS--PD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 47999999999999999999974 488866 999999999999887 899999999999999999999999865 89
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
+-+||||++++.+.+.+||++|+.|||+||++-.+|...+.++......
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~ 125 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE 125 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776543
No 6
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.81 E-value=1.1e-18 Score=183.01 Aligned_cols=198 Identities=19% Similarity=0.289 Sum_probs=137.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|.+++||||||+...+..|..+|... ++.+. .+.++.++++.+... .||+|++|+.||+++|++++++|++.. .
T Consensus 1 m~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~--~~DlVllD~~mp~~dgle~l~~i~~~~--~ 76 (354)
T PRK00742 1 MMKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKL--NPDVITLDVEMPVMDGLDALEKIMRLR--P 76 (354)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhh--CCCEEEEeCCCCCCChHHHHHHHHHhC--C
Confidence 45689999999999999999999876 78877 899999999998765 799999999999999999999999864 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCC
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLRT--NELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTN 183 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~~--eeL~~~L~~llr~~r~~~l~~r~~~~~~~~lvgssp~~a~s~ 183 (558)
+|||++|+.. ......++++.||+|||.||+.. ..+......++.+.+........ . .......+ .
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~~~~~--~-----~~~~~~~~--~ 146 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAARARVR--A-----LPPRAAAA--A 146 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhhcccc--c-----cCcccccc--C
Confidence 8999999753 45677899999999999999942 11111112222222211100000 0 00000000 0
Q ss_pred cceeeecCCccccccCCCCCCCCCCCccccCCCccEEEEEccccchhhccccccccCCCCCC-ccccccCCCCCCCCc
Q 008655 184 STTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVP-GISDRRTGQFSAGPK 260 (558)
Q Consensus 184 ~tvLi~ges~~~~~~~~~~~l~~~~~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~~~~~l~~~~~ 260 (558)
.. ... .. ...... ......+++||+|+||++||+.+ |..+|.+++ ++++.+ ||+.+++
T Consensus 147 ~~---~~~----------~~-~~~~~~--~~~~~~~~~igaS~gg~~al~~~-l~~l~~~~~~~~~~~~--h~~~~~~ 205 (354)
T PRK00742 147 RA---AAA----------AP-AALAAA--PLLSSKLVAIGTSTGGPEALQKV-LTPLPANFPAPILIVQ--HMPAGFT 205 (354)
T ss_pred CC---ccc----------CC-cccccc--cCCCCcEEEEecCccCHHHHHHH-HHhCCCCCCCeEEEEE--CCCCChh
Confidence 00 000 00 000000 00112689999999999999999 999999999 588888 9999985
No 7
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.78 E-value=2.5e-18 Score=165.24 Aligned_cols=121 Identities=24% Similarity=0.446 Sum_probs=112.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..-|.|||||..+|+.+..+|+..||+|.++.++.+.|...... .|-++|+|+.||+|+|+++..+|.+.. ...||
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~--~~~PV 79 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERG--IRLPV 79 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcC--CCCCE
Confidence 45799999999999999999999999999999999999996444 799999999999999999999999865 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|++|++.+...+++||+.||.|||.|||+.+.|+.++++.+++..
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887643
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.78 E-value=1e-17 Score=144.16 Aligned_cols=111 Identities=32% Similarity=0.564 Sum_probs=105.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gy-eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
||||||++..+..+...|...|+ +|..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 899999999999999887 799999999999999999999999875 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008655 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (558)
Q Consensus 114 LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~ 149 (558)
+|...+.....+++++|+.+||.||++.++|.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999988764
No 9
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.78 E-value=3.8e-18 Score=166.70 Aligned_cols=123 Identities=20% Similarity=0.402 Sum_probs=113.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++|||||||+.+.+.-..+++.. ||.++ +|.++++|..++... .||||++|+-||+.+|+++|.+|+..+ .++-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGIELLPELRSQH--YPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCccHHHHHHHHhcC--CCCC
Confidence 58999999999999999999876 78755 999999999999877 799999999999999999999999865 8899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~ 159 (558)
||++|+-.+.+.+.+||+.||.|||.|||..+.|..++.+..+++..+.
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~ 125 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE 125 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998887776554
No 10
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.74 E-value=7.1e-19 Score=132.34 Aligned_cols=44 Identities=57% Similarity=1.011 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhccCCCCccchhhhhhhhccCCCccceeeecC
Q 008655 475 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 518 (558)
Q Consensus 475 r~~~~~r~~~k~~~r~~~k~i~y~~rk~~a~~r~r~~g~f~~~~ 518 (558)
|+++|+||++||++|+|+|+|+|+|||.+|+.|||||||||+..
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~ 44 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS 44 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence 68899999999999999999999999999999999999999865
No 11
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.72 E-value=1.2e-16 Score=157.38 Aligned_cols=119 Identities=23% Similarity=0.391 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCS-YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g-yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++||||||++.+|..|..+|...+ ++|+ .+.++.++++.+... .||||++|+.||+++|+++++.|++.. ++++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~--~pdvvl~Dl~mP~~~G~e~~~~l~~~~--p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAREL--KPDVVLLDLSMPGMDGLEALKQLRARG--PDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhc--CCCEEEEcCCCCCCChHHHHHHHHHHC--CCCc
Confidence 479999999999999999998775 8866 888999999998766 899999999999999999999999654 8899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
||++|.+.+...+.+++++||.+|+.|..+.++|..+|+.++.+.
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999987654
No 12
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.72 E-value=3.4e-16 Score=137.90 Aligned_cols=121 Identities=26% Similarity=0.440 Sum_probs=105.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPR-QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~-EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.+...+||||||++..+..+..+|...|+.|..+.++. +|++.+... ..||+|++|+.||++||++++++|+.. ..
T Consensus 2 ~~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~-~~~dlii~D~~mp~~~G~~~~~~l~~~--~~ 78 (130)
T COG0784 2 LLSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLREL-PQPDLILLDINMPGMDGIELLRRLRAR--GP 78 (130)
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhC--CC
Confidence 34678999999999999999999999999999999995 999999865 139999999999999999999999975 36
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE-LLNLWTHMW 152 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~ee-L~~~L~~ll 152 (558)
.+|||++|+.........+++.|+.+||.||+...+ |...+.+++
T Consensus 79 ~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 79 NIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 778899999888877778899999999999977666 666666444
No 13
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=7.7e-17 Score=167.75 Aligned_cols=121 Identities=28% Similarity=0.484 Sum_probs=113.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh-hcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR-DKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~-~~~~~~i 109 (558)
.+++||+|||++..+..+..+|+..+|+|..|.+|++|++++..+ .||+||+|+.||+|||+++|.+|+. .+....+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 468999999999999999999999999999999999999999876 6999999999999999999999999 6667889
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||++|+..+.+...+++..||+|||.||++..+|..++...+.
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988865543
No 14
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.70 E-value=7.1e-16 Score=151.31 Aligned_cols=123 Identities=20% Similarity=0.337 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++||||||++.++..+..+|... ++. |..+.++.+|++.+... .|||||+|+.||+++|+++++.|+... +++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~--~pdlvllD~~mp~~~gle~~~~l~~~~--~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF--KPGLILLDNYLPDGRGINLLHELVQAH--YPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCC
Confidence 589999999999999999999864 775 66999999999999866 799999999999999999999998743 668
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~ 158 (558)
+||++|+..+.+...++++.||.+||.||++.++|...|+++..+....
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~ 128 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887765543
No 15
>PLN03029 type-a response regulator protein; Provisional
Probab=99.68 E-value=1.9e-15 Score=149.44 Aligned_cols=125 Identities=30% Similarity=0.521 Sum_probs=110.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC------------------CCceEEEEeCCCCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG------------------SDIDLILAEVDLPMT 91 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~------------------~~PDLIILDi~MP~m 91 (558)
+.+++||||||+...+..+..+|...||+|..+.++.++++.+.... ..+||||+|+.||++
T Consensus 6 ~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~ 85 (222)
T PLN03029 6 ESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGM 85 (222)
T ss_pred CCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCC
Confidence 35789999999999999999999999999999999999999986431 136799999999999
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+++++.|+.......+|||++|+........++++.||.+||.||+...+|...+.++++.
T Consensus 86 ~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 86 TGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred CHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 999999999976444679999999999999999999999999999999999997777666554
No 16
>PRK11173 two-component response regulator; Provisional
Probab=99.66 E-value=2.9e-15 Score=145.94 Aligned_cols=119 Identities=20% Similarity=0.413 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||||||++..+..+...|...|++|..+.++.+++..+... .||+||+|+.||+++|+++++.|+.. ..+|
T Consensus 2 ~~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~---~~~p 76 (237)
T PRK11173 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQ---ANVA 76 (237)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcC---CCCC
Confidence 456899999999999999999999999999999999999998765 79999999999999999999999864 5789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++++..+......+++.||++||.||++..+|...++.++++
T Consensus 77 ii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 77 LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999988899999999999999999999999998887765
No 17
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-15 Score=163.46 Aligned_cols=125 Identities=25% Similarity=0.478 Sum_probs=118.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+||||||+...+..|..+|...||+|..+.++.+|+..+.+. +||+||+|+.||.+||++++++++.......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 468999999999999999999999999999999999999999876 899999999999999999999999987778999
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
||++++.++.....+|++.|+.|||.||+...+|..++++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999888877654
No 18
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=3.3e-15 Score=143.29 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+...|...|+++..+.++.+++..+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 5899999999999999999999999999999999999988655 79999999999999999999999863 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++++..+.+...+++++||++||.||++..+|...++.++++
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998887764
No 19
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.65 E-value=3.9e-15 Score=142.91 Aligned_cols=118 Identities=21% Similarity=0.400 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++..+..+...|...|++|..+.++.+++..+... .||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 3799999999999999999999999999999999999998765 799999999999999999999999753 689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++++..+......+++.||+|||.||++..+|...+..++++
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998887654
No 20
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.65 E-value=5.3e-15 Score=160.25 Aligned_cols=164 Identities=21% Similarity=0.353 Sum_probs=131.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+||||||++..+..|..+|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~--~~~p 77 (469)
T PRK10923 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRH--PMLP 77 (469)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhC--CCCe
Confidence 457999999999999999999999999999999999999999765 799999999999999999999998754 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhh-hhhccccccccccCCCC----------C
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLA-EKNILSYDFDLVASDPS----------D 179 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~l~-~r~~~~~~~~lvgssp~----------~ 179 (558)
||++|+..+.+...++++.||.+||.||+...+|...+.+++...+..... ..........+++.++. .
T Consensus 78 vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~lig~s~~~~~l~~~~~~~ 157 (469)
T PRK10923 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRL 157 (469)
T ss_pred EEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccceecCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877653322111 10111111234554433 2
Q ss_pred CCCCcceeeecCCcccccc
Q 008655 180 ANTNSTTLFSDDTDDKSRR 198 (558)
Q Consensus 180 a~s~~tvLi~ges~~~~~~ 198 (558)
+.....+++.|++++.+..
T Consensus 158 ~~~~~~vli~Ge~GtGK~~ 176 (469)
T PRK10923 158 SRSSISVLINGESGTGKEL 176 (469)
T ss_pred hccCCeEEEEeCCCCcHHH
Confidence 4556778888888886643
No 21
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.64 E-value=6.4e-15 Score=141.97 Aligned_cols=121 Identities=29% Similarity=0.451 Sum_probs=110.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++..+..|...|...|+++..+.++.++++.+... .||+||+|+.||+++|+++++.|+.....+.+||
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCE
Confidence 35899999999999999999998899999999999999998765 7999999999999999999999987533467899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++++..+.....+++++||++||.||++..+|...+..++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998887654
No 22
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.64 E-value=7.2e-15 Score=139.53 Aligned_cols=118 Identities=27% Similarity=0.468 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++..+..|...|...|+.|..+.++.++++.+... .||+|++|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 4799999999999999999999999999999999999998765 799999999999999999999999753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++|+..+.....++++.||.+||.||++..+|...+..++++
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988887654
No 23
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.64 E-value=6.9e-15 Score=141.56 Aligned_cols=117 Identities=25% Similarity=0.451 Sum_probs=108.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
+||||||++..+..+...|...|+.|..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+|||+
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii~ 77 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILL 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEEE
Confidence 799999999999999999998999999999999999988765 799999999999999999999999753 6789999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 114 LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+..+.+...+++++||++||.||++..+|...+..++++
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998887653
No 24
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.64 E-value=7.3e-15 Score=139.57 Aligned_cols=121 Identities=31% Similarity=0.483 Sum_probs=110.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++.++..+...|...|++|..+.++.+++..+... .||+||+|+.||+++|+++++.|+.....+.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 36899999999999999999998899999999999999998765 7999999999999999999999987533467899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++++..+.....++++.||++||.||++..+|...+..++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988877654
No 25
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.64 E-value=8.4e-15 Score=140.14 Aligned_cols=119 Identities=22% Similarity=0.404 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++..+..+...|...||+|..+.++.++++.+... .||+|++|+.||+++|+++++.|+.. ..+||
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~---~~~~i 76 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSR---STVGI 76 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCE
Confidence 36899999999999999999999999999999999999998765 79999999999999999999999874 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|++++..+.....++++.||+|||.||++..+|...+..++++.
T Consensus 77 i~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 77 ILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998887653
No 26
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.64 E-value=9e-15 Score=144.57 Aligned_cols=123 Identities=20% Similarity=0.386 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++||||||++.++..+..+|... ++.+. .+.++.++++.+......|||||+|+.||+++|+++++.|++.. +.+
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS 78 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCC
Confidence 368999999999999999999864 67654 88999999998863223699999999999999999999999754 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||++|+..+.....++++.||.+||.||++.++|...+..++....
T Consensus 79 ~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~ 125 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 (239)
T ss_pred CEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765443
No 27
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.63 E-value=8e-15 Score=139.80 Aligned_cols=121 Identities=23% Similarity=0.393 Sum_probs=109.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|.+++||||||++..+..+...|...|+.|..+.++.+++..+... .||+||+|+.||+++|+++++.|+... +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 1 MQQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFH--PAL 76 (228)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCC
Confidence 3457999999999999999999998899999999999999988755 799999999999999999999999753 679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++++..+......+++.||++||.||++..+|...+..++++
T Consensus 77 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 77 PVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred CEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 999999999888899999999999999999999999988876654
No 28
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.63 E-value=6.8e-15 Score=157.55 Aligned_cols=123 Identities=29% Similarity=0.472 Sum_probs=112.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
...+++||||||++..+..+...|...||.|..+.++.+++..+... .||+||+|+.||+++|+++++.|+... +.
T Consensus 2 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALN--PA 77 (441)
T ss_pred CCCcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CC
Confidence 34568999999999999999999999999999999999999998765 799999999999999999999999754 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+|||++|++.+.+.+.++++.||.+||.||++..+|...+..++...
T Consensus 78 ~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred CeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877643
No 29
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.62 E-value=1.3e-14 Score=137.71 Aligned_cols=118 Identities=32% Similarity=0.466 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++.++..+...|...|+++..+.++.+++..+... .||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~--~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKG--QREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 4799999999999999999998899999999999999988765 799999999999999999999999753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++|...+.....++++.||.+||.||++..+|...+..++++
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999888877654
No 30
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.62 E-value=1.3e-14 Score=141.07 Aligned_cols=120 Identities=28% Similarity=0.442 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||||||++..+..|...|...||+|..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~--~~~p 79 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQN--NPTP 79 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 356899999999999999999999999999999999999998765 799999999999999999999999753 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++++..+......+++.||++||.||++..+|...+..++++
T Consensus 80 ii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 80 IIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998887754
No 31
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.62 E-value=1.4e-14 Score=141.10 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..|...|...||+|..+.++.++++.+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 5899999999999999999999999999999999999998765 79999999999999999999999973 467999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++++..+.....+++++||+|||.||+...+|...+..++++
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999988888889999999999999999999999998887765
No 32
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.61 E-value=2.4e-14 Score=138.18 Aligned_cols=120 Identities=28% Similarity=0.474 Sum_probs=109.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+.+++||||||++..+..+...|...++.|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.. +.+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~---~~~ 78 (240)
T CHL00148 4 NSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKE---SDV 78 (240)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCC
Confidence 3467999999999999999999998899999999999999988765 79999999999999999999999864 579
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+.....++++.||++||.||++..+|...+..++++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 79 PIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred cEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998887654
No 33
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=1.8e-14 Score=138.33 Aligned_cols=116 Identities=34% Similarity=0.517 Sum_probs=106.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+...|...|+.|..+.++.++++.+. . .||+||+|+.||+++|+++++.|+... .+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~--~~d~vl~d~~~~~~~g~~~~~~l~~~~---~~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKELRQTH---QTPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-c--CCCEEEEeCCCCCCcHHHHHHHHHhcC---CCcEE
Confidence 58999999999999999999988999999999999999875 3 699999999999999999999999753 38999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++|+..+.....++++.||++||.||++..+|...+..++++
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 999999988899999999999999999999999998887764
No 34
>PRK15115 response regulator GlrR; Provisional
Probab=99.61 E-value=1.2e-14 Score=156.16 Aligned_cols=123 Identities=21% Similarity=0.410 Sum_probs=113.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.+...+||||||++..+..+...|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.|+... +.
T Consensus 2 ~~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~--~~ 77 (444)
T PRK15115 2 SRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQ--PG 77 (444)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CC
Confidence 45678999999999999999999999999999999999999998765 799999999999999999999998753 77
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+|||++|+..+.....+++++||.+||.||+...+|...+..++...
T Consensus 78 ~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 78 MPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred CcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998877643
No 35
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.61 E-value=2.3e-14 Score=137.64 Aligned_cols=118 Identities=26% Similarity=0.403 Sum_probs=108.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPV 111 (558)
+||||||+..++..+...|...||+|..+.++.+++..+... .||+|++|+.||+ .+|+++++.|+... +.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 699999999999999999998899999999999999998765 7999999999998 58999999998753 67899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|++|+..+.+....++++||++||.||+...+|...++.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998887654
No 36
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.61 E-value=2.2e-14 Score=140.50 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=106.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..|...|...||.|..+.++.++++.+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii 76 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATK---SDVPII 76 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEE
Confidence 3899999999999999999999999999999999999998765 79999999999999999999999864 578999
Q ss_pred EEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~-~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++++. .+.....+++++||++||.||++..+|...++.++++
T Consensus 77 ~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred EEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 99985 4666778999999999999999999999998887764
No 37
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.60 E-value=2.6e-14 Score=138.66 Aligned_cols=121 Identities=14% Similarity=0.322 Sum_probs=108.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHHhhc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSY-Q-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPM---TKGLKMLKYITRDK 104 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gy-e-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~---mDGlElL~~Ir~~~ 104 (558)
|..++||||||++.++..|..+|...++ . |..+.++.++++.+... .|||||+|+.||+ ++|++++++|+...
T Consensus 1 m~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~DlvllD~~l~~~~~~~g~~~~~~l~~~~ 78 (216)
T PRK10840 1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHF 78 (216)
T ss_pred CCceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC--CCCEEEEeCcCCCCCCCCHHHHHHHHHHHC
Confidence 3458999999999999999999987654 4 56899999999998765 7999999999999 59999999998753
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+.+|||++|...+.....++++.||.+||.||....+|..+++.++.+
T Consensus 79 --~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 79 --PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred --CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 779999999999999999999999999999999999999999887654
No 38
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.60 E-value=2.7e-15 Score=152.42 Aligned_cols=119 Identities=22% Similarity=0.411 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++|+||||+..+...|..+|++.+..+..|....+|++.|... +|||||+|+.||+|+|++++++++... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 4899999999999999999999998888999999999999887 899999999999999999999999875 889999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
++|++.. .+..++...+.|||.||++.+.|..+|.++.++...
T Consensus 77 fIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~ 119 (361)
T COG3947 77 FISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVEL 119 (361)
T ss_pred EEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccccc
Confidence 9999875 666788888899999999999999999888755443
No 39
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.59 E-value=3.8e-14 Score=135.25 Aligned_cols=117 Identities=30% Similarity=0.461 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++..+..+...|...|+.|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 3799999999999999999998899999999999999998765 79999999999999999999999864 468999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++++..+.+...+++++||++||.||+...+|...+..++++
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988876643
No 40
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.59 E-value=3.2e-14 Score=153.26 Aligned_cols=161 Identities=24% Similarity=0.374 Sum_probs=127.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++..+..|...|...||+|..+.++.+|+..+... .||+||+|+.||+++|+++++.|+... +.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~--~~~pv 79 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPV 79 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 45899999999999999999999999999999999999999765 799999999999999999999998754 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhh---hhhcc-c-cccccccCCCC--------
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLA---EKNIL-S-YDFDLVASDPS-------- 178 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~l~---~r~~~-~-~~~~lvgssp~-------- 178 (558)
|++|+..+.+...++++.||.|||.||++..+|...+..++......... ..... . ....+++.++.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~l~~~~~~~~ii~~S~~~~~~~~~~ 159 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDT 159 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccccccchhhhhhhhhhhccccccceecccHHHhHHHHHH
Confidence 99999999999999999999999999999999998888776533221110 01000 0 11124454443
Q ss_pred --CCCCCcceeeecCCcccc
Q 008655 179 --DANTNSTTLFSDDTDDKS 196 (558)
Q Consensus 179 --~a~s~~tvLi~ges~~~~ 196 (558)
.+.....+++.|++++.+
T Consensus 160 ~~~a~~~~~vli~Ge~GtGK 179 (457)
T PRK11361 160 AKIALSQASVLISGESGTGK 179 (457)
T ss_pred HHHcCCCcEEEEEcCCCccH
Confidence 234566788888877754
No 41
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.59 E-value=3.4e-14 Score=152.86 Aligned_cols=158 Identities=18% Similarity=0.267 Sum_probs=123.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHHhhcCCCCc
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~-----mDGlElL~~Ir~~~~~~~i 109 (558)
||||||++.++..|...| .||+|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.|+... +.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 699999999999999888 789999999999999999876 7999999999996 89999999998754 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhh---hhhhccc-cccccccCCCC-------
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGL---AEKNILS-YDFDLVASDPS------- 178 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~l---~~r~~~~-~~~~lvgssp~------- 178 (558)
|||++|+..+.+...++++.||+|||.||++.++|...++.++....+... ....... ....+++.++.
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~~l~~~~~~~~~~~lig~s~~~~~l~~~ 154 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLYTLETENRRLQSALGGTALRGLITSSPGMQKICRT 154 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhhhhHHHHHHhhhhhhcccccceeecCHHHHHHHHH
Confidence 999999999999999999999999999999999999988887654322110 0011111 11124444433
Q ss_pred ---CCCCCcceeeecCCcccccc
Q 008655 179 ---DANTNSTTLFSDDTDDKSRR 198 (558)
Q Consensus 179 ---~a~s~~tvLi~ges~~~~~~ 198 (558)
.+....++++.|++++.+..
T Consensus 155 i~~~a~~~~~vli~Ge~GtGK~~ 177 (445)
T TIGR02915 155 IEKIAPSDITVLLLGESGTGKEV 177 (445)
T ss_pred HHHHhCCCCCEEEECCCCcCHHH
Confidence 23456678888888776543
No 42
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.58 E-value=4.8e-14 Score=140.66 Aligned_cols=120 Identities=19% Similarity=0.337 Sum_probs=106.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++||||||++.++..+...|... ++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQ--QPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 579999999999999999999864 56654 799999999999866 79999999999999999999999976433348
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||++|+........++++.|+.+||.||++..+|...+..++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998887654
No 43
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.58 E-value=1.8e-14 Score=134.37 Aligned_cols=112 Identities=18% Similarity=0.387 Sum_probs=106.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
..||||||..+...|...+++.||+|.+|.+.+++|..++.. .|.-.++|+.|.+.+|+.+++.|++.. .+..|||
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~PayAvvDlkL~~gsGL~~i~~lr~~~--~d~rivv 86 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA--PPAYAVVDLKLGDGSGLAVIEALRERR--ADMRIVV 86 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCceEEEEeeecCCCchHHHHHHHhcC--CcceEEE
Confidence 599999999999999999999999999999999999999876 899999999999999999999999865 8899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008655 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (558)
Q Consensus 114 LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~ 149 (558)
+|++.+.-.+++|+++||.+||.||-+.+.+..++.
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 999999999999999999999999999998877654
No 44
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.58 E-value=2.6e-14 Score=165.12 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=111.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
..++||||||++..+..+..+|...|+.|..+.++.+|++.+... .||+||+|+.||+|||+++++.|++....+.+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 467999999999999999999999999999999999999999766 899999999999999999999999754457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
||++|+....+...++++.|+++||.||++..+|...+.+++.
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999888877654
No 45
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=1.9e-14 Score=151.86 Aligned_cols=121 Identities=25% Similarity=0.487 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||||||++..+..|..+|.. .+.+..+.++.+|+..+... +|||||+|+.||+++|+++++.|++....+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 467899999999999999999965 46777899999999998665 899999999999999999999999754457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++|++.+.+.+.+|++.||.|||.||++.++|...+....+.
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776554
No 46
>PRK09483 response regulator; Provisional
Probab=99.57 E-value=7.9e-14 Score=132.79 Aligned_cols=120 Identities=19% Similarity=0.340 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|++||||||++..+..+..+|... ++.+. .+.++.+++..+... .||+||+|+.+|+++|+++++.|++.. +.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYT--PDV 76 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 479999999999999999999874 78876 789999999998765 799999999999999999999998754 779
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|||+++...+.....+++..||.+||.||++.++|...++.++++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999998877643
No 47
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.57 E-value=7.2e-14 Score=132.30 Aligned_cols=116 Identities=33% Similarity=0.529 Sum_probs=107.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
||||||++..+..+...|...|+.+..+.++.++++.+... .||+|++|+.||+++|+++++.|+... +.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccC--CCCcEEEE
Confidence 68999999999999999998899999999999999998765 799999999999999999999998653 67899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 115 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+...+.....+++.+||++||.||+...+|...+..++++
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988877654
No 48
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.57 E-value=4.9e-14 Score=165.43 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
..++||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|++.. +.+|
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~--~~DlVl~D~~mP~mdG~el~~~ir~~~--~~~p 875 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLTDVNMPNMDGYRLTQRLRQLG--LTLP 875 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 457999999999999999999999999999999999999999876 799999999999999999999999864 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
||++|+....+...++++.|+++||.||++..+|...+.++..+.
T Consensus 876 II~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 876 VIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888776543
No 49
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.56 E-value=9.8e-14 Score=130.88 Aligned_cols=118 Identities=16% Similarity=0.309 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
++||||||++..+..+...|...|+++. .+.++.++++.+... .||+|++|+.||+++|+++++.++... +.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 3799999999999999999998899987 799999999998765 799999999999999999999998753 67899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++++..+.....++++.||++||.||++..+|...++.++++
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999887654
No 50
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.56 E-value=1e-13 Score=149.70 Aligned_cols=117 Identities=26% Similarity=0.464 Sum_probs=108.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
||||||++..+..+...|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.|+... +.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~--~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRH--PQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Confidence 69999999999999999999999999999999999998765 799999999999999999999998753 67899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 115 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|+..+.....++++.|+.+||.||+..++|...+..++...
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877643
No 51
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.55 E-value=1.4e-13 Score=129.52 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=108.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|...+||||||++..+..+...|... ++.+. .+.++.++++.+... .||+|++|+.||+++|+++++.|+... +
T Consensus 1 ~~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~--~ 76 (210)
T PRK09935 1 MKPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQ--S 76 (210)
T ss_pred CCcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--C
Confidence 45689999999999999999999876 57875 788999999988765 799999999999999999999999753 6
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|||++|+..+.....+++..||++|+.||++..+|...+..++.+
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 77 TVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred CCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 78999999999989999999999999999999999999998877654
No 52
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.55 E-value=7.5e-14 Score=161.57 Aligned_cols=120 Identities=22% Similarity=0.342 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc--CCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK--ELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~--~~~~i 109 (558)
.++||||||++..+..+..+|...|++|..|.++.+|++.+... .||+||+|+.||+|+|+++++.|+... ..+.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 46899999999999999999999999999999999999999765 899999999999999999999998642 12679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||++|+..+.+...++++.|+++||.||++..+|...+..++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988877654
No 53
>PRK14084 two-component response regulator; Provisional
Probab=99.54 E-value=1.8e-13 Score=134.70 Aligned_cols=116 Identities=20% Similarity=0.425 Sum_probs=101.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCS-Y-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g-y-eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++||||||++..+..|..+|...+ + .|..+.++.+++..+... .||+||+|+.||+++|+++++.|+... ..++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMK--EPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCE
Confidence 479999999999999999998765 5 466899999999998765 799999999999999999999999753 5678
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++|+..+ .+.++++.||.+||.||+..++|...+.+++..
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888888654 577999999999999999999999998887644
No 54
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.54 E-value=3.8e-14 Score=163.59 Aligned_cols=120 Identities=23% Similarity=0.475 Sum_probs=109.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+..+||||||+...++....+|...|.+|..+.+|.||++++... ..+|+||||++||.|||+++.++||+... .++|
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~-~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~p 742 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP-HSYDVIFMDLQMPEMDGYEATREIRKKER-WHLP 742 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC-CcccEEEEEcCCcccchHHHHHHHHHhhc-CCCC
Confidence 368999999999999999999999999999999999999999732 37999999999999999999999998643 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
||.+|+........+|++.|.+.||.||+..+.|...+.+.+
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888777654
No 55
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.53 E-value=1.8e-13 Score=128.25 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=103.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++||||||++..+..|...|... ++. +..+.++.+++..+... .||+||+|+.||+++|+++++.|+ +.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~-----~~~ 73 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP-----KGM 73 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc-----cCC
Confidence 368999999999999999999754 565 45889999999998765 799999999999999999999986 357
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||+++...+.+....+++.||++||.||++.++|...++.++++
T Consensus 74 ~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999888754
No 56
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.53 E-value=9.3e-13 Score=111.12 Aligned_cols=125 Identities=22% Similarity=0.452 Sum_probs=110.0
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
|..+.++|||+++++.....+...|...++. +..+.++.+++..+... .+|++++|+.+++++|+++++.++.....
T Consensus 1 ~~~~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~ 78 (129)
T PRK10610 1 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAM 78 (129)
T ss_pred CCcccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCc
Confidence 3456689999999999999999999988885 67889999999988665 79999999999999999999999875434
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+.+|+|+++..........+++.|+.+|+.||++..+|...++.++++
T Consensus 79 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 79 SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred CCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 678999999888888899999999999999999999999988887654
No 57
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.52 E-value=2.7e-13 Score=132.33 Aligned_cols=115 Identities=17% Similarity=0.387 Sum_probs=98.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g-yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|++||||||++..+..|..+|...+ +.+ ..+.++.++++.+... .||+||+|+.||+++|+++++.|+.. ...
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~ 75 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPE---HMP 75 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhccc---CCC
Confidence 3799999999999999999998877 444 4789999999998765 79999999999999999999998632 345
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+||++|+.. +.+.++++.||.+||.||+..++|...+.++.+
T Consensus 76 ~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 76 YIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred EEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 688888765 467899999999999999999999998887754
No 58
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.51 E-value=2.2e-13 Score=158.11 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||||||++..+..+..+|...||+|..+.++.+|++.+... ..|||||+|+.||+|||+++++.|+.. .+.+|
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~--~~~~~ 756 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQ--YPSLV 756 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCC
Confidence 457999999999999999999999999999999999999988643 268999999999999999999999975 37899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++|+........++++.|+++||.||++.++|...+.++++.
T Consensus 757 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 757 LIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999887754
No 59
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.51 E-value=7.5e-13 Score=125.64 Aligned_cols=119 Identities=28% Similarity=0.446 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++..+..+...|...++.+..+.++.++++.+... .||+|++|+.+|+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRG--QTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 4799999999999999999998899998999999999988765 799999999999999999999998753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+++...+.....+++..||++||.||+...+|...+..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999898999999999999999999999999888776543
No 60
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.50 E-value=2.7e-13 Score=158.00 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=111.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC-
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR- 108 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~- 108 (558)
....+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.......
T Consensus 700 ~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~ 777 (968)
T TIGR02956 700 LPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNE 777 (968)
T ss_pred ccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCC
Confidence 3456899999999999999999999999999999999999999865 8999999999999999999999998543223
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+|||++|+....+...++++.|+++||.||++..+|...+..++.
T Consensus 778 ~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 778 VKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999888764
No 61
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.50 E-value=9.7e-13 Score=126.94 Aligned_cols=117 Identities=29% Similarity=0.448 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++.++..|..+|...++.|..+.++.+++..+... .||+|++|+.||+++|+++++.|+.. ..+|||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRF---SDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 4899999999999999999999999999999999999998765 79999999999999999999999863 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+++...+......+++.||.+||.||+...+|...+..++++
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 999998888889999999999999999999999888877654
No 62
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.49 E-value=8.5e-13 Score=139.28 Aligned_cols=123 Identities=27% Similarity=0.397 Sum_probs=111.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+...|...+++|..+.++.+++..+... .||+||+|+.||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 5899999999999999999998899999999999999999765 79999999999999999999999875434578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
++++..+.....++++.||++||.||++.++|..++..+++....
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 125 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKMV 125 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765443
No 63
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.49 E-value=3.7e-13 Score=154.21 Aligned_cols=121 Identities=21% Similarity=0.338 Sum_probs=106.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC-
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR- 108 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~- 108 (558)
...++||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+.......
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~ 600 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDL 600 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCC
Confidence 4468999999999999999999999999999999999999999755 7999999999999999999999997543344
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+|||++|+.... ...+++..|+++||.||++..+|...+.+++.
T Consensus 601 ~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 601 PPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred CcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 489999987654 46789999999999999999999998887764
No 64
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.48 E-value=6.8e-13 Score=122.75 Aligned_cols=120 Identities=23% Similarity=0.466 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~--~~~~ 77 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARG--SPLP 77 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCC
Confidence 457899999999999999999998899999999999999988755 799999999999999999999998753 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||+++...+......+++.|+.+|+.||+...+|...+..++..
T Consensus 78 ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 78 VIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888776654
No 65
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.46 E-value=6.8e-13 Score=158.59 Aligned_cols=119 Identities=19% Similarity=0.343 Sum_probs=109.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||||||++..+..+..+|+..|++|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~--~~~p 1032 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQN--SSLP 1032 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 357999999999999999999999999999999999999999765 799999999999999999999999753 7799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
||++|+..+.....++++.|+++||.||++.++|...+.++..
T Consensus 1033 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1033 IWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988876643
No 66
>PRK13435 response regulator; Provisional
Probab=99.45 E-value=1.7e-12 Score=117.45 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=101.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~ 107 (558)
|.+++|||+|+++..+..+...|...|+.+. .+.++.++++.+... .||+||+|+.++ +.+|+++++.++.. .
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~---~ 77 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSAD---G 77 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhC---C
Confidence 4578999999999999999999998899876 789999999988655 799999999998 58999999999763 5
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|||+++...+ ...++..|+.+||.||++..+|...|++++.+
T Consensus 78 ~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (145)
T PRK13435 78 GVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSAR 121 (145)
T ss_pred CCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhc
Confidence 789999997643 25688899999999999999999988877643
No 67
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.43 E-value=5.3e-12 Score=117.31 Aligned_cols=121 Identities=19% Similarity=0.330 Sum_probs=107.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|+.++||||||++..+..+...|... ++.+. .+.++.+++..+... .||+|++|+.|++++|+++++.++... +
T Consensus 1 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~--~ 76 (211)
T PRK15369 1 MKNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRW--P 76 (211)
T ss_pred CCccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHC--C
Confidence 35689999999999999999999875 46654 889999999988765 799999999999999999999998753 6
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|||+++...+......++..|+.+|+.||+...+|...+..++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 77 AMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999888876543
No 68
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.43 E-value=5.6e-12 Score=118.69 Aligned_cols=120 Identities=24% Similarity=0.341 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
...+||||||++..+..|..+|... ++.+. .+.++.+++..+... .||+|++|+.+|+++|+++++.|+... +.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~--~~ 80 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKS--LS 80 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 4679999999999999999999765 56654 789999999998765 799999999999999999999998754 67
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+|+++...+......+++.|+.+|+.||++..+|...+..++++
T Consensus 81 ~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 81 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred CcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8999999999999999999999999999999999999999887654
No 69
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.42 E-value=6.7e-12 Score=117.79 Aligned_cols=120 Identities=24% Similarity=0.321 Sum_probs=106.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
..++||||||++..+..+...|.. .++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++... +.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~--~~ 80 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDG--VT 80 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 357999999999999999999975 467765 789999999988765 799999999999999999999999754 67
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+|+++...+......+++.|+.+|+.||++..+|...++.++.+
T Consensus 81 ~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 81 AQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 8999999988888899999999999999999999999988876543
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.41 E-value=1.9e-12 Score=145.88 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=104.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
.++||||||++..+..+..+|...+|.|..+.++.+++..+... .|||||+|+.||+++|++++++|+... +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~--~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTT--AVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcC--CCCCE
Confidence 47999999999999999999988899999999999999998765 799999999999999999999998753 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRT--NELLNLWTHMWR 153 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~--eeL~~~L~~llr 153 (558)
|++|+..+.+...+++..||.+||.||... ..+...++..+.
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 999999999999999999999999999754 355555555544
No 71
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.40 E-value=2.4e-12 Score=127.52 Aligned_cols=119 Identities=12% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH-HHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML-KYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL-~~Ir~~~~~~ 107 (558)
+...+|++|||++.++..|..+|. .++. +..+.++.++++.+. .|||||+|+.||+++|++++ +.|++.. +
T Consensus 8 ~~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~--p 80 (216)
T PRK10100 8 SHGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKN--N 80 (216)
T ss_pred ccCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhC--C
Confidence 456789999999999999999998 4454 457889999998742 58999999999999999997 5677643 7
Q ss_pred CceEEEEecCCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLR--LGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~--~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
.++||++|+..+ ....++. .||.+||.|+.+.++|..+|+.++++...
T Consensus 81 ~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 81 NIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred CCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcc
Confidence 899999999876 3445666 49999999999999999999998776443
No 72
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.35 E-value=8.1e-12 Score=123.08 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=92.0
Q ss_pred HHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEE---EeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 45 SDAVFSLLVKC---SYQVTSVRSPRQVIDALNAEGSDIDLIL---AEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 45 r~~L~~lL~~~---gyeV~~Asdg~EALe~L~~~~~~PDLII---LDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
|..|..+|... +|.|..+.++.++++.+... .||+|| +|+.||+++|++++++|++.. +.+|||++|+..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKF--PRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHC--CCCCEEEEeCCC
Confidence 56778888642 46667999999999998765 799998 688999999999999999764 789999999988
Q ss_pred CHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 119 EVSVVVKCL-RLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 119 d~e~a~eAL-~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+.....+++ +.||.+||.||.+.++|..+|+.++++..
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 777676766 79999999999999999999999877543
No 73
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-11 Score=119.38 Aligned_cols=121 Identities=16% Similarity=0.326 Sum_probs=103.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
|..+..+||++||.+..+..+...|...||+++ ++.++-++.+.+... .|||||+|+.+|..|-++-+..... .
T Consensus 1 ~~~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~--~pDvVildie~p~rd~~e~~~~~~~---~ 75 (194)
T COG3707 1 MAAMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL--QPDVVILDIEMPRRDIIEALLLASE---N 75 (194)
T ss_pred CCccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc--CCCEEEEecCCCCccHHHHHHHhhc---C
Confidence 345678999999999999999999999999855 888999999999877 8999999999999995555444443 2
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
...|||++|++.+...+..+++.||..||.||+....|+..+.-...
T Consensus 76 ~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 76 VARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred CCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHH
Confidence 67899999999999999999999999999999998887766655443
No 74
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.33 E-value=1.9e-11 Score=120.06 Aligned_cols=117 Identities=11% Similarity=0.140 Sum_probs=97.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CE-EEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHHhhcCCC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCS--YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g--ye-V~~Asdg~EALe~L~~~~~~PDLIILDi~--MP~mDGlElL~~Ir~~~~~~ 107 (558)
+.||||||++.++..+..+|...+ +. |..+.++.+++..+... .|||||+|+. |++++|++++++|++.. +
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~--p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQH--P 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHC--C
Confidence 368999999999999999998654 34 45889999999988755 7999999976 88889999999999754 7
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAAD-YLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~D-YL~KP~~~eeL~~~L~~llr~ 154 (558)
.++||++|+..+.... .++..|+.. |+.|+.+.++|..+++.+..+
T Consensus 77 ~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 77 NTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred CCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 7999999998776654 356556554 899999999999999887654
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.28 E-value=8.8e-11 Score=116.24 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=100.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~ 108 (558)
...+||||||++..+..+...|+..|+.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++.++... .
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~ 210 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTF---D 210 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhC---C
Confidence 356899999999999999999998899887 789999999998765 7999999999995 89999999998752 7
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|||++|+..+.... +...|+.+||.||++.++|...+.+++..
T Consensus 211 ~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 211 VPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred CCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 899999997765443 44567899999999999999998876554
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.25 E-value=1.6e-10 Score=92.48 Aligned_cols=111 Identities=32% Similarity=0.507 Sum_probs=99.7
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 36 LLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 36 LIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
||+++++..+..+...|...|+.+..+.+..+++..+... .+|+|++|..++..+|+++++.++.. .+.+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 5789999999999999998899999999999999988765 79999999999999999999999875 3678999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 116 AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
..........++..|+.+|+.||+...+|...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHh
Confidence 88878888899999999999999999988877654
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.23 E-value=1.9e-10 Score=133.62 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=106.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++..+..+...|...||+|..+.++.++++.+......||+||+ .||+++|+++++.|+... +.+||
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~--~~ipI 772 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA--PTLPI 772 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC--CCCCE
Confidence 46899999999999999999999999999999999999999764234799999 799999999999998754 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++++........+++..| ++||.||++..+|...|..+++.
T Consensus 773 Ivls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 773 ILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred EEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 9999999989999999999 99999999999999999887653
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.17 E-value=6.5e-10 Score=119.96 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=107.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~i 109 (558)
.+.+||||+|++..+..+..+|...||++..+.++.++++.+... ..||+||+|..||+ ++|+++++.|+... +.+
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~--~~~ 490 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQ--PKI 490 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhC--CCC
Confidence 356899999999999999999999999999999999999998643 25999999999997 99999999999753 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||+++...+......++..|+.+||.||+...+|...++.++.
T Consensus 491 ~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 491 KVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred cEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 99999999888888889999999999999999999988877654
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.15 E-value=3.2e-10 Score=117.34 Aligned_cols=89 Identities=24% Similarity=0.450 Sum_probs=79.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~ 140 (558)
.+.++.+|++.+... .||+||+|+.||+++|++++++|+... +.+|||++|+..+.+.+.++++.||+|||.||+.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 478999999999765 799999999999999999999999754 6799999999999999999999999999999994
Q ss_pred -HHHHHHHHHHHHH
Q 008655 141 -TNELLNLWTHMWR 153 (558)
Q Consensus 141 -~eeL~~~L~~llr 153 (558)
.++|...+.+.++
T Consensus 78 ~~~~L~~~i~~~l~ 91 (303)
T PRK10693 78 DLNRLREMVFACLY 91 (303)
T ss_pred cHHHHHHHHHHHhh
Confidence 8888888877654
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=8.8e-10 Score=111.28 Aligned_cols=117 Identities=19% Similarity=0.427 Sum_probs=101.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++|+||||++..+..|..++... .+++. .+.++.++++.+... .||++++|+.||+++|+++.+.|+... +..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~--~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGD--PRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccC--CCC
Confidence 478999999999999999999843 23433 788999999999876 899999999999999999999999753 667
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+++|++.+ .+..+++..|.|||.||+..+.|...+..+.+.
T Consensus 77 ~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 8889999875 677788999999999999999999988876654
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.95 E-value=8.2e-09 Score=118.71 Aligned_cols=117 Identities=11% Similarity=0.179 Sum_probs=92.7
Q ss_pred EEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH----HHHHHHH
Q 008655 34 RILLCDNDSN--------SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL----KMLKYIT 101 (558)
Q Consensus 34 rVLIVDDd~~--------~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl----ElL~~Ir 101 (558)
+||||||+.. +++.|...|+..||+|..+.++.+|+..+... ..||+||+|+.||+++|+ ++|++|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~IR 80 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHHH
Confidence 7999999995 69999999999999999999999999999752 279999999999999997 8999999
Q ss_pred hhcCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLRTNEL-LNLWTHMWRR 154 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~~eeL-~~~L~~llr~ 154 (558)
+.. ..+|||++|++.+ .+.....++ -+..|+.+--+..++ ...+....++
T Consensus 81 ~~~--~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (755)
T PRK15029 81 ERQ--QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_pred hhC--CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHH
Confidence 753 6899999999886 444334333 367788887665554 3345544443
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.30 E-value=7.6e-06 Score=95.22 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=95.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+|||+||++..+..+..+|...|+.|..+.++.+ +... .||++++|+.||.+++...+............+
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTDF 608 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCCc
Confidence 3469999999999999999999999999999998887 3333 799999999999887776655554433334557
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
+|+++..........+.+.|+.+|+.||+...+|...+....
T Consensus 609 ~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 609 LILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 788888888888889999999999999999999988776543
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.07 E-value=7.4e-06 Score=89.17 Aligned_cols=93 Identities=23% Similarity=0.370 Sum_probs=81.1
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 57 YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 57 yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++|.+|.++.+++..+..+ +||++++|+.||+|+|+++++++++.. . +++++|...+...-.+++++|+.+||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~--~~~~~lld~~m~~~~~~~~~~~lk~~~---~-~~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLDH--KPDYKLLDVMMPGMDGFELCRRLKAEP---A-TVVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhcC--CCCeEEeecccCCcCchhHHHHHhcCC---c-ceEEEEecCCCCcchhHHhhhhhhhcc
Confidence 5677899999999999876 899999999999999999999999853 2 389999988888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 008655 137 KPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 137 KP~~~eeL~~~L~~llr~~ 155 (558)
||.....+....+.+.+..
T Consensus 87 ~~~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CCCChHHHHHhhhhhccch
Confidence 9999888887777765543
No 84
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=97.57 E-value=2.3e-05 Score=76.13 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=32.1
Q ss_pred EEEEEccccchhhccccccccCCCCCC-ccccccCCCCCCCCc
Q 008655 219 TATVVASTSGTAAVEPIDASECGPDVP-GISDRRTGQFSAGPK 260 (558)
Q Consensus 219 iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~~~~~l~~~~~ 260 (558)
||+||+||||++||+.| |..||.++| ++++.| ||+++++
T Consensus 1 vV~IGaSaGG~~al~~i-l~~lp~~~~~~ivivq--H~~~~~~ 40 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEI-LSALPADFPAAIVIVQ--HMPPGFT 40 (182)
T ss_dssp EEEEEE-TTHHHHHCCC-HCCS-TTSSSEEEEEE-----TTHH
T ss_pred CEEEEeCCCCHHHHHHH-HHHhccCCCceEEEEE--CCCCCcc
Confidence 68999999999999999 999999999 999999 9999974
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.54 E-value=0.00069 Score=46.82 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=48.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP 89 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP 89 (558)
+|+++++++..+..+...+...|+++..+.+..+++..+... .+|++++|+.++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 799999999999999999998899988999999999988655 799999998764
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.44 E-value=0.0011 Score=59.19 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=75.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
||||||||..-|..|..+|+=.|+++..+....- ....... ..+.+++-..-.. ...++++.+.+.. +++|||+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~-~~~~~l~~l~~~~--~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS-KLAELLKELLKWA--PHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch-hHHHHHHHHHhhC--CCCCEEE
Confidence 6999999999999999999999988877665433 2222222 3454444332222 5567888887754 8999999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008655 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 114 LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
+......... ..+.+-|.-|++-.+|...++++
T Consensus 75 lg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 75 LGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 9987765111 11666788999999999888764
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.00 E-value=0.022 Score=53.11 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=89.5
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHH
Q 008655 30 RSKVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYI 100 (558)
Q Consensus 30 m~~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~I 100 (558)
|++.+||+. |.+..=...+..+|+..||+|+.. ...++.++.+.+. .||+|.+...+... .-.+++++|
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~--~~d~V~lS~~~~~~~~~~~~~~~~L 78 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--DADAILVSSLYGHGEIDCRGLREKC 78 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCccccCHHHHHHHHHHH
Confidence 456788888 888877888888999999998844 3678888888776 89999999888753 345677788
Q ss_pred HhhcCCCCceEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 101 TRDKELQRIPVIMMSAQD------EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~~------d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
++.. .+.++|+ +.+.. ..+...++.++|++.++......+++...+++.+.
T Consensus 79 ~~~~-~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 79 IEAG-LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HhcC-CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 7652 2455544 44322 34456788999998899888888998888877654
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.74 E-value=0.038 Score=50.04 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=76.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHhhcCCCCceEEE
Q 008655 39 DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 39 DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~~~~~~~iPVIV 113 (558)
|.+..=...+..+|+..||+|+.. ...++.++.+.+. .||+|.+...++.. .--++++.|++.. +....|+
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~--~~d~V~iS~~~~~~~~~~~~~~~~L~~~~--~~~i~i~ 85 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELG--AGDILVV 85 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcccchhhHHHHHHHHHHHHhcC--CCCCEEE
Confidence 555555566777888889998743 3578888888776 89999999887642 2245677777653 3244566
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008655 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (558)
Q Consensus 114 LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~ 149 (558)
+.+....+...++.++|.+.|+..-...++.+..++
T Consensus 86 ~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 86 GGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 666555666778889999999998888887766543
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.56 E-value=0.1 Score=48.39 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=79.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHHhh
Q 008655 33 VRILLC----DNDSNSSDAVFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYITRD 103 (558)
Q Consensus 33 irVLIV----DDd~~~r~~L~~lL~~~gyeV~~---Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDG-lElL~~Ir~~ 103 (558)
+||+|. |-+..-...+..+|+..||+|+. ..+.++.++.+.+. .+|+|.+...+.. +.. -++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455443 34444456677788888999873 45788999998876 8999999876643 222 3456667664
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
. .....|++-+.-..+...+..++|++.|+..-.+..+.+..+.+.+
T Consensus 81 g--~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 81 G--RPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred C--CCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 3 2223345554444556778899999999998888888877776644
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.76 E-value=0.12 Score=46.06 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=65.5
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCC-CceEE
Q 008655 39 DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQ-RIPVI 112 (558)
Q Consensus 39 DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~-~iPVI 112 (558)
|.+..=...+..+|+..||+|+.. ...++.++.+.+. +||+|.+...+.. ....++++.+++.. + .++ |
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~-i 84 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIP-V 84 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcC--CCCCe-E
Confidence 555556677888999999998643 3677888888776 8999999887654 24567788888753 3 444 5
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
++.+..-......+...|++.|+..
T Consensus 85 ~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 85 LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred EEECCCCChhHHHHHHcCCeEEECC
Confidence 5555443333357889999777753
No 91
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.73 E-value=0.12 Score=46.40 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceEEEEecCCCHHH
Q 008655 45 SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSAQDEVSV 122 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~ 122 (558)
...|...|...|++|+.+.+.++++..+... .....|++++. +. ....++|+.|+... ..+||.+++.+...+.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~ 81 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERDTTED 81 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCCCccc
Confidence 3457777877899999999999999999875 47899999987 22 23568899999876 8899999998765444
Q ss_pred HHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHH
Q 008655 123 VVKCLRLGAADYLVKPLRTNE-LLNLWTHMWR 153 (558)
Q Consensus 123 a~eAL~~GA~DYL~KP~~~ee-L~~~L~~llr 153 (558)
+-.-+-.-++.|+....+..+ +...|....+
T Consensus 82 l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 82 LPAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CCHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 444455568899988766544 4455555543
No 92
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=94.94 E-value=0.01 Score=58.42 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=47.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~ 140 (558)
.+|+++.++.||.+.++.++..+.......++|++++............+..|+.+|+.+|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 125 (340)
T KOG1601|consen 63 SIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDR 125 (340)
T ss_pred cccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCccccccccccc
Confidence 689999999999999999988887633345666666666555555666777778888888876
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=94.90 E-value=0.56 Score=43.84 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=74.1
Q ss_pred HHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-C-HHHHHHHHHhhcCCCCceEEEEecC--
Q 008655 45 SDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-K-GLKMLKYITRDKELQRIPVIMMSAQ-- 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP~m-D-GlElL~~Ir~~~~~~~iPVIVLSa~-- 117 (558)
...+..+|+..||+|+ ...+.++.++.+.++ .+|+|.+...|... . --++.++|++.. ... ++|++-+.
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~--~adiVglS~l~~~~~~~~~~~~~~l~~~g-l~~-~~vivGG~~v 93 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET--KADAILVSSLYGHGEIDCKGLRQKCDEAG-LEG-ILLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEecccccCHHHHHHHHHHHHHCC-CCC-CEEEecCCcC
Confidence 4567888899999987 455889999998877 89999998877542 2 335666777643 223 44666653
Q ss_pred -CCHH---HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 118 -DEVS---VVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 118 -~d~e---~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
...+ ...++.++|++..+...-..+++...|++.+
T Consensus 94 i~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 94 VGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred cChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 1222 2346889999888888888898888887765
No 94
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=94.54 E-value=0.02 Score=39.07 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCccchh
Q 008655 473 DRREAALIKFRQKRKERCFDKKIRYV 498 (558)
Q Consensus 473 ~~r~~~~~r~~~k~~~r~~~k~i~y~ 498 (558)
..|.+.|.||-||||.|.+. +..|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 36999999999999999988 66664
No 95
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.49 E-value=0.038 Score=65.95 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL 88 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~M 88 (558)
...+||||||++.++..+..+|+..|++|..+.++ +.. ..+||||+|+.+
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS--QEYDIFLTDNPS 737 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC--CCCCEEEECCCC
Confidence 35799999999999999999999999999988763 222 279999999984
No 96
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.71 E-value=1 Score=46.20 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=82.1
Q ss_pred CcEEEEEeCCHHHHHHHHHH------HHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHH
Q 008655 32 KVRILLCDNDSNSSDAVFSL------LVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP---------MTKGL 94 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~l------L~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP---------~mDGl 94 (558)
-+++=|+.|+..+.-.+.+. |-+.||.|+ ++.|...|..+... .+++| || +..-.
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~~ 164 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLNP 164 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCH
Confidence 57888888776544333333 334599877 55677777776643 58887 66 22126
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~~r~~ 158 (558)
++++.|++. ..+|||+=.+-...+.+.++|++||+.++. |.-++..+...+...+...++.
T Consensus 165 ~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 165 YNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred HHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888875 568999888899999999999999999965 4455677777777776665543
No 97
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.62 E-value=0.21 Score=52.27 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe-cCCCHHHHHHHHHcCCCEE
Q 008655 56 SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS-AQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 56 gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS-a~~d~e~a~eAL~~GA~DY 134 (558)
|.++..+.+..++-.... .-.+|++|-.+-. .+.+.+. + +...||++. ...+.+....||+.||.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~~--p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAGL--P--RRRRVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh----HHHhccC--C--CCCCEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 455667777666544432 4678888865411 1111111 1 233455454 4667889999999999999
Q ss_pred EeCCCCHHHHHHHHHHH
Q 008655 135 LVKPLRTNELLNLWTHM 151 (558)
Q Consensus 135 L~KP~~~eeL~~~L~~l 151 (558)
|.+|+...+|...+.++
T Consensus 69 l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 69 AVLPEAEGWLVELLADL 85 (322)
T ss_pred eeCCCCHHHHHHHHHhh
Confidence 99999999998877553
No 98
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.33 E-value=0.87 Score=53.20 Aligned_cols=116 Identities=10% Similarity=0.023 Sum_probs=76.3
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 33 VRILLCDNDS-N-----SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 33 irVLIVDDd~-~-----~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
++||||+++. . -.+.|.+.|+..||+|+.+.+..+++..++.. ...+.|++++.-. ..+++..|+...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLN-- 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhC--
Confidence 3678887763 1 13456777888899999999999999998754 4788899986433 355888888765
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR-TNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~-~eeL~~~L~~llr~ 154 (558)
..+||+++........+-...-.-++.|+.--.. .+.+...|....++
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNE 123 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHH
Confidence 7899999987543332222222335566654433 33334445554443
No 99
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.14 E-value=2.5 Score=43.53 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=81.6
Q ss_pred CcEEEEEeCCHHHHHHHHH------HHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHH
Q 008655 32 KVRILLCDNDSNSSDAVFS------LLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP---------MTKGL 94 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~------lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP---------~mDGl 94 (558)
-+++=|+.|+....-.+.. .|-+.||.|. ++.|...|-.+... .|++| || +..-.
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~~ 164 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLNP 164 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCH
Confidence 5788888876644333332 3335599877 55677777776543 58888 66 22126
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~~r~~ 158 (558)
++++.|++. ..+|||+=.+-...+.+.++|++||+.++. |.-++..+...+...+...+..
T Consensus 165 ~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr~a 230 (250)
T PRK00208 165 YNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGRLA 230 (250)
T ss_pred HHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 788888874 578999888899999999999999999965 4455677777777766655543
No 100
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=92.91 E-value=1.9 Score=42.41 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=70.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~ 102 (558)
..+||+. |-+..=..++..+|+..||+|+.. ...++.++.+.+. +||+|.+...|... ...++++.|++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHH
Confidence 3577777 677766788888999999998743 3578888888776 89999999977753 34567788887
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
......++|++=-..-+.+ -+-..||+.|-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 5422256665544433333 456779998875
No 101
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.50 E-value=4.3 Score=38.50 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHH
Q 008655 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIV----DDd~~~r~~L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir 101 (558)
.++||||. |-+..=.+.+.++|...||+|+ ...+++|+++...+. ..|+|.+...--+ ...-++.+.++
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEeccchHHHHHHHHHHHHH
Confidence 56788775 6666667889999999999987 567999999998665 7898887653222 12334566666
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
+.. ..++. +++-+.-..+...+..+.|++.++.--....+....+...+
T Consensus 89 e~G-~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 89 EAG-VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HhC-CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 543 12222 24445555555667778999999987677766655554443
No 102
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.46 E-value=1.1 Score=52.31 Aligned_cols=116 Identities=9% Similarity=0.108 Sum_probs=74.2
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 33 VRILLCDNDS-N-----SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 33 irVLIVDDd~-~-----~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
++||||+++. . -.+.|...|++.||+|+.+.+..+++..++.. .....|++|+.- ....++..|+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~-- 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMN-- 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhC--
Confidence 3677887662 1 13557777888899999999999999998754 478889998643 2255888888765
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR-TNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~-~eeL~~~L~~llr~ 154 (558)
..+||+++........+-...-.-++.|+.--.+ .+.+...|....++
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDE 123 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHH
Confidence 7899999986543322211222234555553333 33343445544443
No 103
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.83 E-value=3.7 Score=38.18 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHHhhcCCCCceEEEEecCC-
Q 008655 45 SDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITRDKELQRIPVIMMSAQD- 118 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mD-GlElL~~Ir~~~~~~~iPVIVLSa~~- 118 (558)
.+.+..+|+..||+|+ ...+.++.++.+.++ ++|+|.+...|.. +. .-++++.|++.. ..+++| ++-+.-
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~--~adiVglS~L~t~~~~~~~~~~~~l~~~g-l~~v~v-ivGG~~~ 91 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--DADAILVSSLYGHGEIDCKGLREKCDEAG-LKDILL-YVGGNLV 91 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCCHHHHHHHHHHHHHCC-CCCCeE-EEECCCC
Confidence 4567788899999987 445789999988876 8999999887765 33 345677777643 235444 444431
Q ss_pred ----C-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008655 119 ----E-VSVVVKCLRLGAADYLVKPLRTNELLNLWT 149 (558)
Q Consensus 119 ----d-~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~ 149 (558)
+ .+...++.++|++..+.....++++...|+
T Consensus 92 i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 92 VGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1 334566889999999998878887776554
No 104
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=90.77 E-value=2.8 Score=41.87 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=70.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir~ 102 (558)
..+|++. |.+..=...+..+|+..||+|+... ..++.++.+.+. +||+|.+...|+. + .-.++++.|++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~--~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH--KADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEccchhccHHHHHHHHHHHHh
Confidence 3577777 6777777778888899999998544 588888888776 8999999998875 2 33467778876
Q ss_pred hcCCCCceEEEEecCCCHHHHHH---HHHcCCCEEEe
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVK---CLRLGAADYLV 136 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~e---AL~~GA~DYL~ 136 (558)
.. ..++|++=-.--+.+.+.. +-..||+.|-.
T Consensus 166 ~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 166 RG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred cC--CCCeEEEEChhcCHHHHhhhhccccCCCceEec
Confidence 53 4666655444444444332 23579988865
No 105
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.70 E-value=0.95 Score=41.74 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=71.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-HhhcCCCCceE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI-TRDKELQRIPV 111 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~I-r~~~~~~~iPV 111 (558)
-+.+.||.+.........+|...+.+|+.-... ..+... .+|.+++.+-.+-.+-+.+.... .+.- .-+-.
T Consensus 12 k~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al--~mtd~ 83 (140)
T COG4999 12 KRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SALPPA--HYDMMLLGVAVTFRENLTMQHERLAKAL--SMTDF 83 (140)
T ss_pred ceeEEecCccHHHHHHHHHHhcCCceEEecccc----cccChh--hhceeeecccccccCCchHHHHHHHHHH--hhhcc
Confidence 578999999999999999999999998864432 223222 68999999987765544443221 1111 12233
Q ss_pred EEEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008655 112 IMMSAQ-DEVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (558)
Q Consensus 112 IVLSa~-~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~ 147 (558)
||+.-. ...-.+.+.+..|+.++|.||++...|+..
T Consensus 84 vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 84 VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 444322 223346788899999999999998887763
No 106
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=88.91 E-value=13 Score=38.68 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=83.3
Q ss_pred CcEEEEEeCCHHH------HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC--H---HHHHH
Q 008655 32 KVRILLCDNDSNS------SDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--G---LKMLK 98 (558)
Q Consensus 32 ~irVLIVDDd~~~------r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD--G---lElL~ 98 (558)
-+++=|+-|+..+ .-.-.+.|-+.||.|. +..|..-|.++.... -.++|-+.-|-.+ | -..++
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~G----c~aVMPlgsPIGSg~Gl~n~~~l~ 182 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIG----CATVMPLGSPIGSGQGLQNLLNLQ 182 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcC----CeEEeeccCcccCCCCCCCHHHHH
Confidence 5777777554322 2223456778899997 445676676665433 2345555555332 2 35677
Q ss_pred HHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHhh
Q 008655 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRMLG 159 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~~r~~~ 159 (558)
.|.+. ..+|||+=.+-...+.+.+||++||+..|. |--++.++...++..++.-|..-
T Consensus 183 ~i~e~---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR~A~ 245 (267)
T CHL00162 183 IIIEN---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGRLAY 245 (267)
T ss_pred HHHHc---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 77765 679999999999999999999999999854 55678888888888777655443
No 107
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.83 E-value=7.5 Score=37.62 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHH
Q 008655 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT--------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126 (558)
Q Consensus 56 gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--------DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eA 126 (558)
+..+. .+.+..++.+.... .+|+|.+.--.|.. .|++.++++++.. .++||+++.+- +.+.+.++
T Consensus 104 ~~~~g~~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~ 177 (212)
T PRK00043 104 DAIIGLSTHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEV 177 (212)
T ss_pred CCEEEEeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHH
Confidence 44444 55677777777643 58999987555543 3588999998752 34899888776 56788899
Q ss_pred HHcCCCEEEe
Q 008655 127 LRLGAADYLV 136 (558)
Q Consensus 127 L~~GA~DYL~ 136 (558)
+.+||+.+..
T Consensus 178 ~~~Ga~gv~~ 187 (212)
T PRK00043 178 LEAGADGVAV 187 (212)
T ss_pred HHcCCCEEEE
Confidence 9999999964
No 108
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.77 E-value=6.2 Score=34.64 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeC-CCCCC-CHHHHHHHHHhhcCCCCceEEEEe
Q 008655 41 DSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEV-DLPMT-KGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 41 d~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi-~MP~m-DGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
.+.-...+..+|++.||+|... .+.++..+.+.+. +||+|.+.. ..+.. ...++++.+++.. ++++|| +-
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~--~pd~V~iS~~~~~~~~~~~~l~~~~k~~~--p~~~iv-~G 87 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAE--RPDVVGISVSMTPNLPEAKRLARAIKERN--PNIPIV-VG 87 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT--TCSEEEEEESSSTHHHHHHHHHHHHHTTC--TTSEEE-EE
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC--CCcEEEEEccCcCcHHHHHHHHHHHHhcC--CCCEEE-EE
Confidence 3455678899999999998755 2457777877776 899999998 44443 3466777777643 555555 44
Q ss_pred cCCCHHHHHHHHH--cCCCEEEeC
Q 008655 116 AQDEVSVVVKCLR--LGAADYLVK 137 (558)
Q Consensus 116 a~~d~e~a~eAL~--~GA~DYL~K 137 (558)
+..-...-.++++ .|++..+.-
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred CCchhcChHHHhccCcCcceecCC
Confidence 4433333445555 566665543
No 109
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.31 E-value=16 Score=31.74 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=64.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 33 VRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+||.||.--..-+..+..++.. .++++. .+. +.+.+....+.. ... ++.| ++.+... ..+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~--~~~-~~~~-----------~~~ll~~---~~~ 63 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY--GIP-VYTD-----------LEELLAD---EDV 63 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT--TSE-EESS-----------HHHHHHH---TTE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh--ccc-chhH-----------HHHHHHh---hcC
Confidence 5788888877777777777776 467765 455 444444443333 344 4444 3334332 244
Q ss_pred eEEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 008655 110 PVIMMSAQ--DEVSVVVKCLRLGAADYLVKPL--RTNELLNLWTHM 151 (558)
Q Consensus 110 PVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~--~~eeL~~~L~~l 151 (558)
-+|+++.. .-.+.+.++++.|..=|+-||+ +.+++.+.++..
T Consensus 64 D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 64 DAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp SEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 55655543 3477899999999999999998 456665554443
No 110
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=87.20 E-value=5.7 Score=39.04 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC-C-HHHHHHHHHhhcCCCCceEEEE
Q 008655 40 NDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMT-K-GLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 40 Dd~~~r~~L~~lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~m-D-GlElL~~Ir~~~~~~~iPVIVL 114 (558)
.+..=...+..+|+..||+|+... ..++.++.+.+. +||+|.+...|+.. . -.++++.|++......++|++=
T Consensus 96 ~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 96 VHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred hhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 344445667778888999988433 678888888876 89999999887753 2 3456777777532234554443
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008655 115 SAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~ 136 (558)
-..-+.+ -+-+.||+.|-.
T Consensus 174 G~~~~~~---~~~~~gad~~~~ 192 (197)
T TIGR02370 174 GAPVTQD---WADKIGADVYGE 192 (197)
T ss_pred ChhcCHH---HHHHhCCcEEeC
Confidence 3333332 356779998864
No 111
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.63 E-value=9.3 Score=37.77 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=59.5
Q ss_pred HHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 47 AVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-------LPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 47 ~L~~lL~~-~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~-------MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
.+.+.+++ .+..+. .+.+.+++...... .+|+|.+... ......++++++|+.. ..+||+...+-
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---~~iPvia~GGI 182 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---VGCPVIAEGRI 182 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---CCCCEEEECCC
Confidence 44445555 566654 66788888665443 5888865321 1223357889999874 36899998888
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 008655 118 DEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 118 ~d~e~a~eAL~~GA~DYL~K 137 (558)
.+.+.+.++++.||+.++.=
T Consensus 183 ~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 183 NTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 88999999999999988653
No 112
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=85.59 E-value=11 Score=44.38 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=76.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~---Asdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~ 102 (558)
..+|+|. |.+..-...+..+|...||+|.. ..+.+++++.+.+. .+|+|++...+... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHh
Confidence 4566654 23333334566677788999863 34688898888776 79999987766542 34577888887
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
.. ..+++ |++.+.--.+....+.++|+++||..-.+..+++..+.+.+
T Consensus 660 ~G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 660 LG-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred cC-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 53 12232 34554422333456788999999998888887777666554
No 113
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=84.13 E-value=23 Score=36.44 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=74.2
Q ss_pred CcEEEEEeCCHHH----HHHH--HHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHHH
Q 008655 32 KVRILLCDNDSNS----SDAV--FSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-----LKMLK 98 (558)
Q Consensus 32 ~irVLIVDDd~~~----r~~L--~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG-----lElL~ 98 (558)
-+|+=|+.|+..+ .+.+ .++|.+.||.|. +..|..-|.++.... . .++|-+.-|-.+| ...++
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G---c-aavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG---C-AAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-----SEBEEBSSSTTT---SSTHHHHH
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC---C-CEEEecccccccCcCCCCHHHHH
Confidence 5788777777543 2333 456778899997 455676666665543 2 2455555554333 36778
Q ss_pred HHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHHHHHHh
Q 008655 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK-----PLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K-----P~~~eeL~~~L~~llr~~r~~ 158 (558)
.|.+. ..+|||+=.+-.....+.+||++|++..|.- --++-.+..+.+..+...+..
T Consensus 169 ~i~~~---~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR~a 230 (247)
T PF05690_consen 169 IIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (247)
T ss_dssp HHHHH---GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 88775 4899999999999999999999999999875 356667777777766655443
No 114
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.49 E-value=28 Score=35.83 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=63.6
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-C--CCCCCHHHHHHHHHhhcCCC-Cc
Q 008655 36 LLCDN-DSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-D--LPMTKGLKMLKYITRDKELQ-RI 109 (558)
Q Consensus 36 LIVDD-d~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~--MP~mDGlElL~~Ir~~~~~~-~i 109 (558)
|++.+ ++.....+.......|.++. .+.+.+|+...+.. .+|+|-+.- . .-..| ++.+.+|...- + ..
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~--p~~~ 212 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLI--PSDR 212 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhC--CCCC
Confidence 34444 33344445555566788765 78899988776543 588887542 1 11223 66667776532 3 35
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++|..++-.+.+.+.+++++||+.++.
T Consensus 213 ~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 889999999999999999999999854
No 115
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=82.45 E-value=12 Score=36.66 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=59.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~g--yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
-+++|+.+++.+++.+.+++...| |.|....+.+++++.++..+..|-|+..+..+.. .++-++..... .-|
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~----~~p 105 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK----GEP 105 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc----CCc
Confidence 478999999999999999999886 7888999999999999755557888888888766 44444433321 236
Q ss_pred EEEEec
Q 008655 111 VIMMSA 116 (558)
Q Consensus 111 VIVLSa 116 (558)
++++-+
T Consensus 106 ~LIvvG 111 (176)
T PRK03958 106 LLIVVG 111 (176)
T ss_pred EEEEEc
Confidence 666655
No 116
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=82.37 E-value=3.9 Score=40.51 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=52.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCC--HHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTK--GLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~--MP~mD--GlElL~~Ir~~~~~~ 107 (558)
+.+|||||.-..+--.|..+|++.|.+|.+..+...-++.+... .||.|++.-. -|.-- .+++++++ ..
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~-----~~ 73 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF-----AG 73 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh-----cC
Confidence 36899999999999999999999998888766654334444444 7999999753 22212 23444444 15
Q ss_pred CceEEEEe
Q 008655 108 RIPVIMMS 115 (558)
Q Consensus 108 ~iPVIVLS 115 (558)
.+||+=+-
T Consensus 74 ~~PiLGVC 81 (191)
T COG0512 74 RIPILGVC 81 (191)
T ss_pred CCCEEEEC
Confidence 67888443
No 117
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=82.12 E-value=14 Score=38.86 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHH
Q 008655 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS 121 (558)
Q Consensus 48 L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~M-----P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e 121 (558)
+...|+..|..|+ .+.+.++|..+.+. .+|.|++.-.- ....-+.++.+++.. .++|||+--+-.+..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 4556666687665 67888888777654 58999884421 122358889999864 468999888888889
Q ss_pred HHHHHHHcCCCEEEe
Q 008655 122 VVVKCLRLGAADYLV 136 (558)
Q Consensus 122 ~a~eAL~~GA~DYL~ 136 (558)
.+..++.+||+....
T Consensus 175 ~~~~al~~GA~gV~i 189 (307)
T TIGR03151 175 GMAAAFALGAEAVQM 189 (307)
T ss_pred HHHHHHHcCCCEeec
Confidence 999999999998865
No 118
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.44 E-value=14 Score=31.89 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+||||.........+...+++.|++.... .........+...-..+|+||+=...-.-+-...+++.-+. .++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk---~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK---YGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH---cCCc
Confidence 58999998888889999999999988766 21111111222211267999887766555555555555432 6789
Q ss_pred EEEEecCCCHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCL 127 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL 127 (558)
+++.-+.. ...+.++|
T Consensus 78 ~~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 78 IIYSRSRG-VSSLERAL 93 (97)
T ss_pred EEEECCCC-HHHHHHHH
Confidence 98775433 33444444
No 119
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=80.31 E-value=22 Score=36.32 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=58.9
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-CCCC
Q 008655 62 VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-KPLR 140 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-KP~~ 140 (558)
...-...++++... .+|.|++|++-...+--++...|+.... ....+++=....+...+.++|+.||+.++. |--+
T Consensus 19 ~~~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s 95 (249)
T TIGR02311 19 GLADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAP-YPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIET 95 (249)
T ss_pred eCCCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHh-cCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCC
Confidence 33445666766655 6999999999988888888887776432 233444444555666889999999999854 4456
Q ss_pred HHHHHHHHHH
Q 008655 141 TNELLNLWTH 150 (558)
Q Consensus 141 ~eeL~~~L~~ 150 (558)
.+++...+..
T Consensus 96 ~e~a~~~v~~ 105 (249)
T TIGR02311 96 AEQAEAAVAA 105 (249)
T ss_pred HHHHHHHHHH
Confidence 6766555443
No 120
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=80.17 E-value=18 Score=32.52 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHH
Q 008655 45 SDAVFSLLVKCSYQVTS--VRSPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVS 121 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~--Asdg~EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e 121 (558)
...+...|.+.|++|.. ....++.++.+... .+||+|.+.+..+.. ...++++.||+.. ++++||+=-.....
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t~- 80 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHATF- 80 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchhh-
Confidence 45678888888887653 34567777777652 279999999855554 4567888898864 56666654433321
Q ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 122 VVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 122 ~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
.....+..-..||+.+--.-.-+...++.
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~ 109 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHH
Confidence 11122445566888875443344444443
No 121
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=78.37 E-value=5.6 Score=38.74 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=50.2
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHh
Q 008655 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQ---VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITR 102 (558)
Q Consensus 27 ~m~m~~irVLIVDDd~~~r~~L~~lL~~~gye---V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~ 102 (558)
...+..-+|..||-++.....|++-++..+.. .+...|...++..+......+|||++|----.... .++++.|..
T Consensus 60 ALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 60 ALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAE 139 (183)
T ss_dssp HHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHH
Confidence 34555679999999999999999999877632 33567888888777443458999999932112222 557777765
Q ss_pred h
Q 008655 103 D 103 (558)
Q Consensus 103 ~ 103 (558)
.
T Consensus 140 ~ 140 (183)
T PF03602_consen 140 N 140 (183)
T ss_dssp T
T ss_pred C
Confidence 3
No 122
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=78.32 E-value=17 Score=37.29 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCcEEEEEeCCHHHH------HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHH
Q 008655 31 SKVRILLCDNDSNSS------DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-----LKML 97 (558)
Q Consensus 31 ~~irVLIVDDd~~~r------~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG-----lElL 97 (558)
.-+++=|+-|+..+. -.-.++|..+||.|. +..|.--|-.+.... -..+|-+.-|-.+| -..|
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G----caavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAG----CAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcC----ceEeccccccccCCcCcCCHHHH
Confidence 347777777764432 223567778899987 444666665554432 34566666664443 3567
Q ss_pred HHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHHHHHHHHH
Q 008655 98 KYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP-----LRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 98 ~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP-----~~~eeL~~~L~~llr~~r~ 157 (558)
+.|.+. ..+|||+=.+-.....+.++|++|++..|.-- -++-.+..+........++
T Consensus 175 ~iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 175 EIIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred HHHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHHhHH
Confidence 777764 58999999999999999999999999998753 3445555555555554443
No 123
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.21 E-value=22 Score=36.60 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHH
Q 008655 46 DAVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 46 ~~L~~lL~~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a 123 (558)
..|++.|..-... ++.....-.+.+++... .+|.|++|.+.-.+|--++...|+.... ..++.|+=....+...+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~lVRvp~~~~~~i 84 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKG-SASAPVVRVPTNEPVII 84 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHH
Confidence 3466666553322 22223334666666655 6999999999999888888777776532 34555555566678889
Q ss_pred HHHHHcCCCEEEeCCCC-HHHHHHHH
Q 008655 124 VKCLRLGAADYLVKPLR-TNELLNLW 148 (558)
Q Consensus 124 ~eAL~~GA~DYL~KP~~-~eeL~~~L 148 (558)
.++|+.||..++.-=+. .++....+
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v 110 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAV 110 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHH
Confidence 99999999999875444 45544433
No 124
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=78.21 E-value=36 Score=33.59 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=57.6
Q ss_pred HHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CC------CCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 48 VFSLLVKCS-YQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DL------PMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 48 L~~lL~~~g-yeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~M------P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
+.+.+++.+ ..+. .+.+.+++...... .+|+|.+.. .. .....+++++.|++. ..+||+...+-.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~---~~ipvia~GGI~ 187 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKA---LGIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHh---cCCCEEEeCCCC
Confidence 333334444 5544 56788888666543 588886532 11 122457889999874 368999988888
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 008655 119 EVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 119 d~e~a~eAL~~GA~DYL~K 137 (558)
+.+.+.+++..||+.++.-
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8999999999999988753
No 125
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=78.12 E-value=24 Score=36.70 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=64.4
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 47 AVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 47 ~L~~lL~~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
.|++.|..-... ++.....-.+.+++... .+|.|++|.+.-..|--++...|+.... ..++.++=....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHH
Confidence 355555543222 22223334666666655 6999999999998888777777776543 344445455566778889
Q ss_pred HHHHcCCCEEEeCCCCH-HHHHHH
Q 008655 125 KCLRLGAADYLVKPLRT-NELLNL 147 (558)
Q Consensus 125 eAL~~GA~DYL~KP~~~-eeL~~~ 147 (558)
++|+.||...+.-=+.. ++....
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~ 108 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQV 108 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHH
Confidence 99999999999866654 444333
No 126
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=77.88 E-value=16 Score=32.14 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=51.4
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCC-CceEEE
Q 008655 39 DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQ-RIPVIM 113 (558)
Q Consensus 39 DDd~~~r~~L~~lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~-~iPVIV 113 (558)
|.++.-...+..+|+..|+++.... ..++.++.+... +||+|.+.+.+... ..++.+..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5556666778888999999987443 567777777765 89999999877653 3566677777653 4 566665
Q ss_pred Ee
Q 008655 114 MS 115 (558)
Q Consensus 114 LS 115 (558)
=-
T Consensus 86 GG 87 (125)
T cd02065 86 GG 87 (125)
T ss_pred eC
Confidence 44
No 127
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.28 E-value=26 Score=35.97 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=58.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HH
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR-TN 142 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~-~e 142 (558)
..-.+.+++... .+|.|++|.+...+|--++...|+... ...++.|+=....+...+.++|+.||..++.-=+. .+
T Consensus 21 ~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~-~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~tae 97 (249)
T TIGR03239 21 GNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALK-GSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAE 97 (249)
T ss_pred CCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHh-hcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHH
Confidence 344666666655 699999999999998888877777653 24455555556677888999999999999875444 45
Q ss_pred HHHHHH
Q 008655 143 ELLNLW 148 (558)
Q Consensus 143 eL~~~L 148 (558)
+....+
T Consensus 98 ea~~~v 103 (249)
T TIGR03239 98 EAERAV 103 (249)
T ss_pred HHHHHH
Confidence 444433
No 128
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=76.77 E-value=26 Score=37.64 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=62.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ---------------VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKM 96 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye---------------V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlEl 96 (558)
.++++||-+.+.-...|.+.+.+.|+. |.......+...++. ..|++++--.....-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----IADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH----hCCEEEECCCcCCCCCCCH
Confidence 456777777765445666776665543 223333344444544 3587666322212234445
Q ss_pred HHHHHhhcCCCCceEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 97 LKYITRDKELQRIPVIMMSAQDEVSVVVKCL-RLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 97 L~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL-~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
++.+. ..+|||.-....+...+.+.+ ..| ++..|-+.++|...+..++.
T Consensus 338 lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~g---~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA-----FGVPVISGPHTFNFKEIFERLLQAG---AAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH-----hCCCEEECCCccCHHHHHHHHHHCC---CeEEECCHHHHHHHHHHHhc
Confidence 55554 567888643333444444443 333 55568889999999988875
No 129
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=75.79 E-value=94 Score=33.42 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=81.1
Q ss_pred CcEEEEEeCCHHHHHHHHH------HHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFS------LLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLK 98 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~------lL~~~gyeV--~~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~ 98 (558)
-+++=|+.|+....-.+.. .|-+.||.| +++.|...|.++... .| +.++-+.=| +..--+.++
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~ 242 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIR 242 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHH
Confidence 4777777776655443333 333459987 366688888777654 35 444443222 223446777
Q ss_pred HHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008655 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~~r~~ 158 (558)
.+.+. ..+|||+=.+-...+.+.+||++||+..|. |--++-.+..+.+..+..-|..
T Consensus 243 ~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~a 304 (326)
T PRK11840 243 LIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRLA 304 (326)
T ss_pred HHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHHH
Confidence 77765 679999988999999999999999999965 4456777777777777655543
No 130
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=74.94 E-value=1.4 Score=49.37 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=37.3
Q ss_pred ccccCCCC----------CCCCCcceeeecCCccccccCCCCCCCCCCCccccCCCccEEEE
Q 008655 171 DLVASDPS----------DANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATV 222 (558)
Q Consensus 171 ~lvgssp~----------~a~s~~tvLi~ges~~~~~~~~~~~l~~~~~~e~~s~~~~iVaI 222 (558)
.++|.|++ +|.++.+||+.|||++.+...+...+..++++....+++.+.||
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred cceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 58888887 78999999999999998765444444445555555556666665
No 131
>PRK07695 transcriptional regulator TenI; Provisional
Probab=74.64 E-value=70 Score=31.10 Aligned_cols=71 Identities=27% Similarity=0.346 Sum_probs=50.9
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH
Q 008655 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (558)
Q Consensus 57 yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~ 128 (558)
..|. .+.+.+++.+... . ..|.|++....|. ..|++.++++... ..+||+.+-+- +.+.+.+++.
T Consensus 96 ~~ig~s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~ 168 (201)
T PRK07695 96 LHVGYSVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLA 168 (201)
T ss_pred CEEEEeCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHH
Confidence 3444 6677787766543 3 5899987653332 2367888888764 46899988877 7788999999
Q ss_pred cCCCEE
Q 008655 129 LGAADY 134 (558)
Q Consensus 129 ~GA~DY 134 (558)
.||+.+
T Consensus 169 ~Ga~gv 174 (201)
T PRK07695 169 AGVSGI 174 (201)
T ss_pred cCCCEE
Confidence 999887
No 132
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.69 E-value=51 Score=34.54 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=62.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C-CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLVKC----S-YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~----g-yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.|||-|.+..+. .+...+... + ..| +.+.+.+++.+.+.. .+|+|.+|=..|. +--++++.++.... .
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~-~ 229 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGL-R 229 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCc-C
Confidence 388888886655 455555422 2 233 488999999999975 4899999954322 22334444543211 1
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+-..|..|+--+.+.+.+..+.|++-+.
T Consensus 230 ~~~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 230 ERVKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred CCEEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 2346777878888889999999987664
No 133
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=72.99 E-value=50 Score=36.13 Aligned_cols=108 Identities=12% Similarity=0.229 Sum_probs=67.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
.++++||.|.+. +..|.++.........-.-..++..+++.. .||+++--. .+.-|+.+++.+. ..+||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA-----~G~PV 358 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA-----SGVPV 358 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH-----cCCCE
Confidence 467888887654 445555554433222222345677777653 587775432 2333566776664 56899
Q ss_pred EEEecCCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRL---GAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~---GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|.... .. ..+.+.. |-.+++..|-+.++|...|..++..
T Consensus 359 I~s~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 359 VAARA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred EEcCC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 85433 22 2334555 8899999999999999999888753
No 134
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=72.82 E-value=31 Score=33.11 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=51.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP~--------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~ 132 (558)
.+.+.+++.+..+ . .+|+|+++--.|. ..|++.++++.+.. +.+||+++.+- +.+.+.++++.|++
T Consensus 102 s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 6778888776544 3 6899998765542 23789999987642 45898888765 46778899999998
Q ss_pred EEEe
Q 008655 133 DYLV 136 (558)
Q Consensus 133 DYL~ 136 (558)
.+..
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8754
No 135
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=72.56 E-value=34 Score=32.12 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHH
Q 008655 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126 (558)
Q Consensus 56 gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~--------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eA 126 (558)
+..+. .+.+..++.+.+.. .+|.|++..-.|. ..+++.++++++. .++||+++.+-. .+.+.++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi~-~~~i~~~ 167 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGIT-PENAAEV 167 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHHHH
Confidence 44444 44567777766543 5899998755442 3467888888764 568999887764 5788899
Q ss_pred HHcCCCEEEe
Q 008655 127 LRLGAADYLV 136 (558)
Q Consensus 127 L~~GA~DYL~ 136 (558)
+.+||+.+..
T Consensus 168 ~~~Ga~~i~~ 177 (196)
T cd00564 168 LAAGADGVAV 177 (196)
T ss_pred HHcCCCEEEE
Confidence 9999998854
No 136
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=72.13 E-value=29 Score=36.57 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhhcCCCCceEE--EEecCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYL-----VKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVI--VLSa~~d~e~a~eAL~~GA~DYL-----~KP~~~eeL~~~L~~llr~ 154 (558)
-++++|+++.+. ..+||| ...+-.+.+.+..++++||+.++ .|.-++.+....+...+..
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 588999999874 468998 66667789999999999999994 4444566655555555443
No 137
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=71.89 E-value=29 Score=33.83 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gye--V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
.+..-+|..||.++.....+.+-++..++. +. ...|..+++..+......+|||++|--.....-.++++.|....-
T Consensus 69 srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~ 148 (189)
T TIGR00095 69 SRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWI 148 (189)
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCC
Confidence 333458999999999999998888777652 33 555666666544322124799999965544334456666655333
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
...--+|++-.
T Consensus 149 l~~~~iiv~E~ 159 (189)
T TIGR00095 149 LEDTVLIVVEE 159 (189)
T ss_pred CCCCeEEEEEe
Confidence 33444555543
No 138
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=71.64 E-value=1e+02 Score=32.88 Aligned_cols=110 Identities=9% Similarity=0.234 Sum_probs=66.0
Q ss_pred CcEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 32 KVRILLCDNDS--------NSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 32 ~irVLIVDDd~--------~~r~~L~~lL~~~gyeV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
.++++||.+.. .....+..+....+-.|.... +.++..+.+.. .|++++--...+.-|+.+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 46777776532 123344444444444444332 45666666653 58887644333333556666654
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||... ... ..+.+..|..+| +..|.+.++|...|..++..
T Consensus 300 -----~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 300 -----AGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred -----cCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 568987643 332 234566788888 56788999999999888754
No 139
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=71.56 E-value=32 Score=36.20 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=60.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC---------------------------------CCC--CCCHHHHHHHHHhhcC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEV---------------------------------DLP--MTKGLKMLKYITRDKE 105 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi---------------------------------~MP--~mDGlElL~~Ir~~~~ 105 (558)
-+++..||+...+. .+|+|=+=+ ... ...++++|+++.+.
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-- 192 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-- 192 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh--
Confidence 66788999988765 488876554 111 23478999999875
Q ss_pred CCCceEE--EEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 008655 106 LQRIPVI--MMSAQDEVSVVVKCLRLGAADYLVK-----PLRTNELLNLWTHMWR 153 (558)
Q Consensus 106 ~~~iPVI--VLSa~~d~e~a~eAL~~GA~DYL~K-----P~~~eeL~~~L~~llr 153 (558)
..+||| ...+-.+.+.+.+++++||+.++.= .-++.+....+...+.
T Consensus 193 -~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 193 -GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred -cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 468997 6666778999999999999999543 3345544444444443
No 140
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.52 E-value=49 Score=28.62 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=56.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
.+|++||.++...+ .+...|+.++... .-.+.|+.+.-. ..+.|++...-. ..-+.++..+++.. +..+|
T Consensus 22 ~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~d-~~n~~~~~~~r~~~--~~~~i 92 (116)
T PF02254_consen 22 IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERAGIE--KADAVVILTDDD-EENLLIALLARELN--PDIRI 92 (116)
T ss_dssp SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSSH-HHHHHHHHHHHHHT--TTSEE
T ss_pred CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhcCcc--ccCEEEEccCCH-HHHHHHHHHHHHHC--CCCeE
Confidence 68999999987644 3345567766433 334555555444 688888776522 33455666676643 56777
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
|+.... .+....+.++||+..+.
T Consensus 93 i~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 93 IARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEESS--HHHHHHHHHTT-SEEEE
T ss_pred EEEECC--HHHHHHHHHCCcCEEEC
Confidence 766553 34455566789987764
No 141
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=71.50 E-value=40 Score=35.75 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=57.0
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CC----C-CC-CHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DL----P-MT-KGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 48 L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~M----P-~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
+.+.|...|..|+ .+.+.++|...++. .+|+|++-= +- . .. +-+.|+..++.. ..+|||.=-+-.+
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~d 201 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--S
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCC
Confidence 4456777787766 89999999988765 489998763 21 1 22 357788888775 5699998888888
Q ss_pred HHHHHHHHHcCCCEEEe
Q 008655 120 VSVVVKCLRLGAADYLV 136 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~ 136 (558)
...+..+|.+||+....
T Consensus 202 g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 202 GRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHcCCCEeec
Confidence 88899999999999865
No 142
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=71.48 E-value=68 Score=31.59 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=56.5
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 48 VFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 48 L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
+.+.+...+..++ .+.+..++..+.+ . ..|.|+++-.-++ ...+++++++++. ..+||++.-+-..
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~-~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~---~~~Pvi~~GGI~~ 167 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEA-A--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA---VDIPVIAAGGIAD 167 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHH-c--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH---hCCCEEEECCCCC
Confidence 3444444565554 4456666655443 3 5798887542111 2457788888864 4689998888888
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008655 120 VSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~K 137 (558)
.+.+.+++..||+.++.-
T Consensus 168 ~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 168 GRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHHHHcCCcEEEEc
Confidence 788999999999988664
No 143
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=71.41 E-value=53 Score=36.84 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEE
Q 008655 41 DSNSSDAVFSLLVKCS-YQVTSVR------SPRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 41 d~~~r~~L~~lL~~~g-yeV~~As------dg~EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVI 112 (558)
.|.-...|...|+..| ++|.... +.++..+.+.+. .||||.+-..-+... ..++++.+++.. ++++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~--P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERL--PNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHC--CCCEEE
Confidence 4666778888998889 5765432 334555566655 799999987655543 457778888753 666666
Q ss_pred EEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLR-LGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~-~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
+=-.+... ...++|. ....||+..--.-..+...++.+
T Consensus 97 ~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 97 LGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred EcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 44333332 2334554 45678988876555555555544
No 144
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=71.23 E-value=33 Score=33.27 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc
Q 008655 51 LLVKCSYQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL 129 (558)
Q Consensus 51 lL~~~gyeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~ 129 (558)
..+..+..+ .-+.+..|+.+.++. .+|+|-++- .+.. |.++++.|+.. .+++|++.+.+- +.+.+.+.++.
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~ 163 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAA 163 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHC
Confidence 333345443 356699999888754 589998853 3333 99999999863 356888877776 77889999999
Q ss_pred CCCEEEeC
Q 008655 130 GAADYLVK 137 (558)
Q Consensus 130 GA~DYL~K 137 (558)
||+.+..-
T Consensus 164 G~~~v~v~ 171 (190)
T cd00452 164 GVVAVGGG 171 (190)
T ss_pred CCEEEEEc
Confidence 98777543
No 145
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=71.05 E-value=73 Score=34.19 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=64.5
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCC--H
Q 008655 34 RILLCDN----DSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTK--G 93 (558)
Q Consensus 34 rVLIVDD----d~~~r~~L~~lL~~~g-yeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----------~mD--G 93 (558)
.+|+||- ...+.+.+..+-...+ ..|+ .+.+.++|..++.. ..|+|.+-+.-- +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6777753 3444444444433433 3333 47799999888764 488876442111 112 5
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.++..+.+. ..+|||.-.+-.....+.+||.+||+.+..
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 6678888764 468999888889999999999999998854
No 146
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=69.90 E-value=62 Score=31.99 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDID-LILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PD-LIILDi~MP~m-DG--lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+.+. ..+ +++.|+.--++ .| +++++++.+. ..+||++-.+-.+.+.+.++++.||+.++.
T Consensus 146 ~~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 445566666554 466 77788854332 22 6888888764 578999888888888899999999999875
No 147
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=68.66 E-value=47 Score=34.51 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=66.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++|+.+.+. +..+...+...+.. |.......+..+++. ..|++++--. .+.-|+.+++.+. ..+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~pS~-~Eg~~~~~lEAma-----~G~ 297 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ----ALDLFVLPSL-AEGISNTILEAMA-----SGL 297 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH----hcCEEEeccc-cccCchHHHHHHH-----cCC
Confidence 356777776543 35566666655532 333333344455554 2477665322 2334667777765 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||+ |.... ..+.+..|..+++..|.+.++|...+..++..
T Consensus 298 Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 298 PVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred CEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 8876 33332 33456678889999999999999999887653
No 148
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=68.54 E-value=75 Score=31.68 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC------CCCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 46 DAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV------DLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi------~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
..|...++..+.-+. .+++.+|++...+. .+|+|=.=+ .......++|+++|.+ ..+|||.=-...
T Consensus 82 ~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~----~~~pvIaEGri~ 154 (192)
T PF04131_consen 82 EELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELVQ----ADVPVIAEGRIH 154 (192)
T ss_dssp HHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHH----TTSEEEEESS--
T ss_pred HHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHHh----CCCcEeecCCCC
Confidence 334444455443233 77899999998764 599887644 1223457899999986 368888777788
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 008655 119 EVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 119 d~e~a~eAL~~GA~DYL~K 137 (558)
+++.+.++|++||+..+.=
T Consensus 155 tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE-
T ss_pred CHHHHHHHHhcCCeEEEEC
Confidence 9999999999999999763
No 149
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=68.51 E-value=30 Score=35.25 Aligned_cols=82 Identities=11% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~ 108 (558)
...-.|||-....-+-..|.+.|.+.|-+|+.+.--++.|+..... .|++...=++..+.+++ +++++|+... +.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~--~p~~~t~v~Dv~d~~~~~~lvewLkk~~--P~ 78 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE--NPEIHTEVCDVADRDSRRELVEWLKKEY--PN 78 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc--CcchheeeecccchhhHHHHHHHHHhhC--Cc
Confidence 3446799999999999999999999999999888888888888765 67777666666777776 4788888764 77
Q ss_pred ceEEEEe
Q 008655 109 IPVIMMS 115 (558)
Q Consensus 109 iPVIVLS 115 (558)
+-|||=-
T Consensus 79 lNvliNN 85 (245)
T COG3967 79 LNVLINN 85 (245)
T ss_pred hheeeec
Confidence 7776543
No 150
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=67.96 E-value=76 Score=35.58 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=64.8
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 008655 32 KVRILLCDND----SNSSDAVFSLLVKC-SYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLPM------------TK 92 (558)
Q Consensus 32 ~irVLIVDDd----~~~r~~L~~lL~~~-gyeV--~~Asdg~EALe~L~~~~~~PDLIILDi~MP~------------mD 92 (558)
.+.+|++|.. ..+...+..+-... +..| ..+.+.++|..++.. ..|.|.+-+. |+ ..
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGVP 315 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCcC
Confidence 4778888854 23344444444443 3333 366688999888865 4788865331 11 22
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
-++++..+.+......+|||.=.+-.....+.+||.+||+..+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 35566666543222468888777888899999999999998864
No 151
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=67.71 E-value=1.1e+02 Score=30.37 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELL 145 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~ 145 (558)
.+..+.+. ..|++++--...+.-|+.+++.+. ..+|||.. .... ..+.+..|..+++.++.+.++|.
T Consensus 254 ~~~~~~~~----~ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~ 320 (359)
T cd03823 254 EEIDDFYA----EIDVLVVPSIWPENFPLVIREALA-----AGVPVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLA 320 (359)
T ss_pred HHHHHHHH----hCCEEEEcCcccCCCChHHHHHHH-----CCCCEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHH
Confidence 44444443 247776543323445667777765 56788753 2222 34556778889999999999999
Q ss_pred HHHHHHHHH
Q 008655 146 NLWTHMWRR 154 (558)
Q Consensus 146 ~~L~~llr~ 154 (558)
..+..++..
T Consensus 321 ~~i~~l~~~ 329 (359)
T cd03823 321 AALERLIDD 329 (359)
T ss_pred HHHHHHHhC
Confidence 999988763
No 152
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=66.89 E-value=1.1e+02 Score=29.44 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCceEEEEeCC-----CCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 45 SDAVFSLLVKCSYQVT----SVRSPRQVIDALNAEGSDIDLILAEVD-----LPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~----~Asdg~EALe~L~~~~~~PDLIILDi~-----MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
...+.+.+++.|..+. .+.+..++++.+. . ..|.|.+... .....+.+.++++++. .++||++.-
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~G 165 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAG 165 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEEC
Confidence 3445555666676544 4558888887443 3 5888887421 1123567777777753 467887666
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008655 116 AQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~K 137 (558)
+- +.+.+.++++.||+.++.=
T Consensus 166 GI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 166 GI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred Cc-CHHHHHHHHhcCCCEEEEe
Confidence 65 4788999999999988553
No 153
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=66.83 E-value=83 Score=30.87 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCC-CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH
Q 008655 52 LVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLP-MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (558)
Q Consensus 52 L~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~ 128 (558)
....|..+. .+.+.+++.+... . .+|.|.+-- ... ...+++++++|++.- ...+|||...+-.+.+.+.++++
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~-~--g~~~i~~t~~~~~~~~~~~~~~~~l~~~~-~~~~pvia~gGI~s~edi~~~~~ 192 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALA-L--GAKIIGINNRDLKTFEVDLNTTERLAPLI-PKDVILVSESGISTPEDVKRLAE 192 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHH-c--CCCEEEEeCCCccccCcCHHHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHH
Confidence 344577654 6677777666654 3 578776541 100 113457788887531 03679999999989899999999
Q ss_pred cCCCEEEe
Q 008655 129 LGAADYLV 136 (558)
Q Consensus 129 ~GA~DYL~ 136 (558)
+||+.++.
T Consensus 193 ~Ga~gviv 200 (217)
T cd00331 193 AGADAVLI 200 (217)
T ss_pred cCCCEEEE
Confidence 99999964
No 154
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=66.32 E-value=60 Score=36.65 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=56.9
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeC--------------CCCC
Q 008655 32 KVRILLCDN----DSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEV--------------DLPM 90 (558)
Q Consensus 32 ~irVLIVDD----d~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi--------------~MP~ 90 (558)
.+.+++||- +....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|.+.+ ..|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCCh
Confidence 355666663 333333344333332 23333 35566777776654 377775443 2333
Q ss_pred CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 91 mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
+.++..+.+......+|||.=.+-.....+.+|+.+||+....=
T Consensus 330 ---~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 330 ---ASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred ---HHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 33433333222124688877668888899999999999988653
No 155
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=66.20 E-value=3 Score=47.25 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=32.8
Q ss_pred ccccCCCC----------CCCCCcceeeecCCccccccCCCCCCCCCCCccccCCCccEEEE
Q 008655 171 DLVASDPS----------DANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATV 222 (558)
Q Consensus 171 ~lvgssp~----------~a~s~~tvLi~ges~~~~~~~~~~~l~~~~~~e~~s~~~~iVaI 222 (558)
+++++++. .|.++++||+.||+++.+...+...+..+.++.-....+.+.||
T Consensus 246 ~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 246 DIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred hhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 37777776 57899999999999998765333333333333333344455554
No 156
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=65.93 E-value=57 Score=32.44 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=58.8
Q ss_pred HHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE-EEecCCCHHHHHHH
Q 008655 49 FSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI-MMSAQDEVSVVVKC 126 (558)
Q Consensus 49 ~~lL~~~g-yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI-VLSa~~d~e~a~eA 126 (558)
-..|...+ +-|+...+.+++++.++.. ..--+=++.+.+-.-++++.++.|++.. + .+++ =.-+--+.+.+..|
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~~--~-~~~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKAL--G-DRALIGAGTVLSPEQVDRL 79 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHc--C-CCcEEeEEecCCHHHHHHH
Confidence 34555555 3455667788887776552 1223446677777778999999998753 2 2322 22234567788999
Q ss_pred HHcCCCEEEeCCCCHHHHHHH
Q 008655 127 LRLGAADYLVKPLRTNELLNL 147 (558)
Q Consensus 127 L~~GA~DYL~KP~~~eeL~~~ 147 (558)
+++||...+ -|....++...
T Consensus 80 ~~aGA~fiv-sp~~~~~v~~~ 99 (206)
T PRK09140 80 ADAGGRLIV-TPNTDPEVIRR 99 (206)
T ss_pred HHcCCCEEE-CCCCCHHHHHH
Confidence 999995544 47655555443
No 157
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=65.86 E-value=37 Score=33.62 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCCCCCCCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 008655 17 IGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDL 88 (558)
Q Consensus 17 ~~~~~~~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~gy--eV-~~Asdg~EALe~L~~~~~~PDLIILDi~M 88 (558)
|+.++.-|-....+..-++++||-+......|.+-+...+. ++ +...|...+|..+... ..+|+|++|---
T Consensus 51 FAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy 124 (187)
T COG0742 51 FAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPPY 124 (187)
T ss_pred cCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCCC
Confidence 45555555555567788999999999999999998887762 23 3445666777766543 149999999533
No 158
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=64.97 E-value=67 Score=31.72 Aligned_cols=84 Identities=10% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC---------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHH---HHHcC
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVDLPM---------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK---CLRLG 130 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~MP~---------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~e---AL~~G 130 (558)
.+-...++++... .+|.|++|++-.. .+-.+++..+.... .....+++=....+.....+ ++..|
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~-~~~~~~~VRvn~~~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAAR-AAGSEIIVRVNSLDSPHIERDLEALDAG 84 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHT-TSSSEEEEE-SSTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccc-cccccceecCCCCCcchhhhhhhhcccC
Confidence 4445566666554 7999999998765 45556666666522 12234444444444444555 99999
Q ss_pred CCEEEeCCC-CHHHHHHHHH
Q 008655 131 AADYLVKPL-RTNELLNLWT 149 (558)
Q Consensus 131 A~DYL~KP~-~~eeL~~~L~ 149 (558)
++.++..=+ +.+++...+.
T Consensus 85 ~~gI~lP~ves~~~~~~~~~ 104 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVA 104 (221)
T ss_dssp SSEEEETT--SHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHH
Confidence 999855433 4555555443
No 159
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=64.45 E-value=23 Score=37.98 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.+++.++++.. ..+|+|.+|+..+..+ -.+++++|++. ++.+|||+ -.-.+.+.+..++++||+..+
T Consensus 99 ~~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 99 YDFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 35666666542 1369999999987644 56789999875 35566554 223467888999999999865
No 160
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=64.08 E-value=1.2e+02 Score=31.31 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=62.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCS--YQVTSV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~g--yeV~~A--sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|+++||.||.--..........+...+ ++++.. .+.+.+.+..... ...-+..| ++.+-+.
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~--~~~~~~~~-----------~~~ll~~-- 65 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF--GIAKAYTD-----------LEELLAD-- 65 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc--CCCcccCC-----------HHHHhcC--
Confidence 467899999977666655555665544 455533 4666666655543 22222222 2233332
Q ss_pred CCCceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008655 106 LQRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (558)
Q Consensus 106 ~~~iPVIVLSa--~~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L 148 (558)
+.+-+|++.. ..-.+.+..||++|..=|+-||+. .++..+.+
T Consensus 66 -~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~ 111 (342)
T COG0673 66 -PDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELV 111 (342)
T ss_pred -CCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHH
Confidence 3344555544 445788999999999999999985 45555433
No 161
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.62 E-value=1.1e+02 Score=30.80 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHH
Q 008655 48 VFSLLVKCS-YQVTSVRSPRQVIDALNAEG-SDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (558)
Q Consensus 48 L~~lL~~~g-yeV~~Asdg~EALe~L~~~~-~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~e 125 (558)
+.+.|...+ .-|+...+.++|++.++... ...+ ++.+.|-.-++++.++.|++.. +++ +|-.-.-.+.+.+..
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~--p~~-~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEV--PEA-LIGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHC--CCC-EEEEeeccCHHHHHH
Confidence 445566666 45667888999998886631 1245 4445455558999999998753 432 233334556688999
Q ss_pred HHHcCCCEEEeCCCCHHHHHHH
Q 008655 126 CLRLGAADYLVKPLRTNELLNL 147 (558)
Q Consensus 126 AL~~GA~DYL~KP~~~eeL~~~ 147 (558)
++++||.-.++--++. ++++.
T Consensus 83 a~~aGA~FivsP~~~~-~vi~~ 103 (212)
T PRK05718 83 AIEAGAQFIVSPGLTP-PLLKA 103 (212)
T ss_pred HHHcCCCEEECCCCCH-HHHHH
Confidence 9999998666644555 55544
No 162
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=63.37 E-value=92 Score=30.90 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=57.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CC----C---------EEEEECCHHHHHHHHHh-cCCCceEEEEeCC-CCCCCHHH
Q 008655 33 VRILLCDNDSNSSDAVFSLLVK--CS----Y---------QVTSVRSPRQVIDALNA-EGSDIDLILAEVD-LPMTKGLK 95 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~--~g----y---------eV~~Asdg~EALe~L~~-~~~~PDLIILDi~-MP~mDGlE 95 (558)
-+.+||..-+..++++.++|.- .| | .|..+.+.++|++.+++ .+.+|-+|..|-. -|+.=.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 4678999999999999998863 22 2 26689999999999966 4458999999987 45555666
Q ss_pred HHHHHHhhcCCCCceEEEE--ecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008655 96 MLKYITRDKELQRIPVIMM--SAQDEVSVVVKCLRLGAADYLVKPLRT 141 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVL--Sa~~d~e~a~eAL~~GA~DYL~KP~~~ 141 (558)
.++++... .+-|++++ |+..-.+.+ |+ ..||+..|+..
T Consensus 123 ~lr~~l~~---~~~P~LllFGTGwGL~~ev---~~--~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEE---EDRPVLLLFGTGWGLAPEV---ME--QCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---HHH---HT--T-SEEB--TTT
T ss_pred HHHHHHhc---cCCeEEEEecCCCCCCHHH---HH--hcCeeEccccc
Confidence 66666533 33466666 555544433 32 57899999753
No 163
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=63.11 E-value=20 Score=36.99 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=50.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCC-------------
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDLPMTK------------- 92 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-------dg~EALe~L~~~~~~PDLIILDi~MP~mD------------- 92 (558)
+||||+..+-.+...|...|...|++|+... +.++..+.+... +||+||--..+...+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~--~pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAF--KPDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHh--CCCeEeccceeecHHhhhhChhhhHHHh
Confidence 5899999999999999999999898887652 566666777665 799998766543322
Q ss_pred --HHHHHHHHHhhcCCCCceEEEEec
Q 008655 93 --GLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 93 --GlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...|.++-. ...+++|.+|+
T Consensus 79 ~~~~~~la~~~~---~~~~~li~~ST 101 (286)
T PF04321_consen 79 VDATKNLAEACK---ERGARLIHIST 101 (286)
T ss_dssp THHHHHHHHHHH---HCT-EEEEEEE
T ss_pred hHHHHHHHHHHH---HcCCcEEEeec
Confidence 2222222222 25689999986
No 164
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=63.04 E-value=82 Score=32.23 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=66.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
..+++|+.+.+. ...+...+...+. .|.......+..+++. ..|++++=.. .+.-|+.+++.+. ..+
T Consensus 227 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~~d~~v~ps~-~E~~~~~~~EAma-----~g~ 295 (371)
T cd04962 227 PARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS----IADLFLLPSE-KESFGLAALEAMA-----CGV 295 (371)
T ss_pred CceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH----hcCEEEeCCC-cCCCccHHHHHHH-----cCC
Confidence 456777765543 3445555555543 3444444444444443 3577776543 3344677777765 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||.. .... ..+.+..|..+|+.+|.+.++|...+..++.
T Consensus 296 PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 296 PVVAS-NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CEEEe-CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 88863 3222 3456777889999999999999998888765
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=62.91 E-value=1.2e+02 Score=34.54 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=66.4
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeC--------------CCCC
Q 008655 32 KVRILLCDNDSN----SSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEV--------------DLPM 90 (558)
Q Consensus 32 ~irVLIVDDd~~----~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi--------------~MP~ 90 (558)
...|+++|-..- +...++++=... +..|+ -+.+.++|..++.. ..|.|.+-+ ..|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 366777775432 123333333333 34443 47789999998864 489887642 2234
Q ss_pred CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 91 mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..-+..+.++.+. ..+|||.=.+-.....+.+||.+||+.+..
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4456667777653 468999989999999999999999998865
No 166
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=62.61 E-value=71 Score=30.58 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC--SYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~--gyeV~~Asd-------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~I 100 (558)
....+|.++-.++.....+...|.+. +.+|.-+.+ .++.++.++.. .||+|++-+.+|... .++.+.
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~ 121 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARH 121 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHH
Confidence 34579999999999999998888765 566653333 45556666655 899999999988744 456666
Q ss_pred HhhcCCCCceEEEEec
Q 008655 101 TRDKELQRIPVIMMSA 116 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa 116 (558)
+.. .+.+|++..+
T Consensus 122 ~~~---l~~~v~i~vG 134 (172)
T PF03808_consen 122 RQR---LPAGVIIGVG 134 (172)
T ss_pred HHH---CCCCEEEEEC
Confidence 654 3445444444
No 167
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=62.57 E-value=33 Score=35.68 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=56.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
.|-+.-.++.+...+..+|...-|.+....++++.++.++.+...+|.+|+.... .-..++..|.+.. .-+|+|+
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g--~LLPaVi 76 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQG--ILLPAVI 76 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT------EEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcC--ccccEEE
Confidence 4556666788889999999888899999999999999998766689999998754 4466788888765 5579999
Q ss_pred EecC
Q 008655 114 MSAQ 117 (558)
Q Consensus 114 LSa~ 117 (558)
+...
T Consensus 77 l~~~ 80 (283)
T PF07688_consen 77 LGSS 80 (283)
T ss_dssp ES--
T ss_pred EecC
Confidence 8763
No 168
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=62.38 E-value=51 Score=34.51 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=59.9
Q ss_pred EEEEEeCCHHHH-------HHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 34 RILLCDNDSNSS-------DAVFSLLVKCS-YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 34 rVLIVDDd~~~r-------~~L~~lL~~~g-yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
.|||=|.+..+. ..+..+=...+ ..| +.+.+.++|.+.+.. .+|+|++| .|+..+-.++++.|+..
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~- 232 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFF- 232 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhcc-
Confidence 466666654433 33333222222 233 477899999999865 59999999 44444444455555432
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
..-.+|-.|+--+.+.+.+....|++-+.
T Consensus 233 --~~~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 233 --DHIPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred --CCCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 22346777888888888888899986653
No 169
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=62.02 E-value=1.8e+02 Score=29.28 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=54.7
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-------CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH
Q 008655 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-------MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (558)
Q Consensus 57 yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-------~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~ 128 (558)
.-|. ++.+.+++.+.... .+|-|.+.--.| .--|++.++++... ..+|++.|-+- +.+.+.+.++
T Consensus 105 ~iIG~S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~---~~iP~vAIGGi-~~~nv~~v~~ 177 (211)
T COG0352 105 LIIGLSTHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIREL---VNIPVVAIGGI-NLENVPEVLE 177 (211)
T ss_pred CEEEeecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHH
Confidence 3454 67788888888653 499999876443 45799999999875 45899888774 4677889999
Q ss_pred cCCCEEE
Q 008655 129 LGAADYL 135 (558)
Q Consensus 129 ~GA~DYL 135 (558)
.||+..-
T Consensus 178 ~Ga~gVA 184 (211)
T COG0352 178 AGADGVA 184 (211)
T ss_pred hCCCeEE
Confidence 9999873
No 170
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=61.76 E-value=86 Score=33.76 Aligned_cols=101 Identities=10% Similarity=0.189 Sum_probs=58.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-C-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVK-C-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~-~-gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.++||.||.- .. .......+.. . ++++. .++ +.+.|-+..+.. ... +..|+ -+++ ..
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~--gi~-~y~~~-------eell----~d--- 62 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRL--GVP-LYCEV-------EELP----DD--- 62 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh--CCC-ccCCH-------HHHh----cC---
Confidence 3589999997 44 4444444444 3 57765 444 455554444433 111 12221 1232 21
Q ss_pred CCceEEEEec----CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 107 QRIPVIMMSA----QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 107 ~~iPVIVLSa----~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
.++-+|.+.+ ..-.+.+.+|+++|..=++-||+..++..+.++.
T Consensus 63 ~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~ 110 (343)
T TIGR01761 63 IDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRL 110 (343)
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHH
Confidence 4555555522 2447899999999999999999986555444433
No 171
>PRK14098 glycogen synthase; Provisional
Probab=61.49 E-value=94 Score=34.75 Aligned_cols=112 Identities=8% Similarity=0.103 Sum_probs=63.9
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~-~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.++++|+.+-+ .....|.++..+.+-.|. ..-+..++..++. ..|++++-- ....-|+..++.++ ..
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS-~~E~~Gl~~lEAma-----~G 405 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPG-KIESCGMLQMFAMS-----YG 405 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCC-CCCCchHHHHHHHh-----CC
Confidence 46777777543 244556666555442332 2234444455554 358777532 23445777777665 45
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+|+|+...-.-.+.+.+....|..+|+..|.+.++|...|.+++.
T Consensus 406 ~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 406 TIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred CCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 566554332222322222234678999999999999998887653
No 172
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.42 E-value=1e+02 Score=31.17 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEeCCCCCC------CHHHHHHHHHhhcCCCCceEEEEe
Q 008655 45 SDAVFSLLVKCSYQVTSVRSP---RQVIDALNAEGSDIDLILAEVDLPMT------KGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asdg---~EALe~L~~~~~~PDLIILDi~MP~m------DGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
...+...+.+.|.++..+-+. .+.++.+... ...++++ -..|+. +-.+.++++++.. ...||++=.
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~g 192 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVGF 192 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEeC
Confidence 445666777888876533322 4455544443 4677777 345542 2245666776542 245665444
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCC
Q 008655 116 AQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~KP 138 (558)
+-.+.+.+.+++++||+.++.-.
T Consensus 193 GI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 193 GLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CcCCHHHHHHHHHcCCCEEEECH
Confidence 55578888888999999998764
No 173
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=60.85 E-value=24 Score=34.23 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIIL 84 (558)
|||||....+-..|.++|...|++|....+-...++.+... .||.||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEE
Confidence 89999999999999999999998877655332223333333 6897666
No 174
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=60.51 E-value=49 Score=32.66 Aligned_cols=68 Identities=15% Similarity=0.279 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 008655 64 SPRQVIDALNAEGSDID-LILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLG-AADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PD-LIILDi~MP~m-DG--lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~G-A~DYL~ 136 (558)
+..+..+.+... .++ ++++++.--++ .| +++++++.+. .++|||.-.+-.+.+.+.++++.| |+.++.
T Consensus 147 ~~~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 147 TAEDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CHHHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 346666666654 466 78888754332 34 6888998864 468999888889999999999998 888874
No 175
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.47 E-value=54 Score=31.40 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC--SYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~--gyeV~~As-------dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
...+|.++...+.....+.+.|++. +.++.-.. +..+.++.+.+. .||+|++-+.+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999988888765 45655322 223346677665 799999999999855 4555666
Q ss_pred hhcCCCCceEEEEec
Q 008655 102 RDKELQRIPVIMMSA 116 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa 116 (558)
.. .+.+|++..+
T Consensus 121 ~~---l~~~v~~~vG 132 (171)
T cd06533 121 DR---LPVPVAIGVG 132 (171)
T ss_pred HH---CCCCEEEEec
Confidence 53 3456665544
No 176
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=60.33 E-value=1.7e+02 Score=28.48 Aligned_cols=110 Identities=11% Similarity=0.167 Sum_probs=65.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++|+.+... ...+...+...+. .|......++..+++. ..|++++-... +.-|..+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~i~ps~~-e~~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYA----KASIFVLTSRF-EGFPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHH----hCCEEEeCccc-cccCHHHHHHHH-----cCC
Confidence 456666665443 3334444444442 3433333345555554 35887776544 223666777765 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|||+........ +.+..|...++.++.+.+++...+..++...
T Consensus 278 Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 278 PVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred CEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHcCH
Confidence 887543223222 3455667889999999999999999887643
No 177
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=59.87 E-value=1.1e+02 Score=31.59 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=66.5
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 47 AVFSLLVKCSYQVTS--VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 47 ~L~~lL~~~gyeV~~--Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
.++..|.....+|.. .-.---..|++... .+|-+++|.+.-..|.-.++..|+.....+..|||=+. ..+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHHH
Confidence 466666654455542 22233344555443 69999999999999999999999987666667777544 35677899
Q ss_pred HHHHcCCCEEEeCCCCHH
Q 008655 125 KCLRLGAADYLVKPLRTN 142 (558)
Q Consensus 125 eAL~~GA~DYL~KP~~~e 142 (558)
++|..||..+|..=++..
T Consensus 84 q~LD~GAqtlliPmV~s~ 101 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTA 101 (255)
T ss_pred HHHccccceeeeeccCCH
Confidence 999999999998656543
No 178
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=59.34 E-value=46 Score=35.94 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 67 QVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 67 EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
+-++.|.+....+|+|++|+.--.. .-++.+++|++.. +. +.|+--.-.+.+.+..++++||+....=
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~--p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAF--PE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhC--CC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3444443332359999999976543 3478899998753 43 3444444778889999999999988643
No 179
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.14 E-value=1.1e+02 Score=34.04 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=57.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHH----HhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCC-CCHHHHHHHHHhhc
Q 008655 32 KVRILLCDNDSNSSDAVFSLL----VKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPM-TKGLKMLKYITRDK 104 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL----~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi--~MP~-mDGlElL~~Ir~~~ 104 (558)
..+|+|++-|. .|..-...| ...|..+..+.+..++.+.+... .+|+||+|. .++. .+.++-+..+....
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 45899999886 333333333 34466666666677777777644 789999996 1221 22333344433221
Q ss_pred --CCCCceEEEEecCCCHHHHHHHHH----cCCCEEEe
Q 008655 105 --ELQRIPVIMMSAQDEVSVVVKCLR----LGAADYLV 136 (558)
Q Consensus 105 --~~~~iPVIVLSa~~d~e~a~eAL~----~GA~DYL~ 136 (558)
..+.-.++|+++....+.+.++++ .|...+|.
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 112346778887666554444443 55566643
No 180
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.73 E-value=87 Score=33.08 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=47.8
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.+.+.+.+|+.+.+.. .+|+|.+| .|.--+--++++.++.. .+-..|..|+--+.+.+.+..+.|++-+-
T Consensus 203 eVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~---~~~v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 203 EVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDAR---APTVLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhcc---CCCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4478999999999865 58999999 44322222333333332 22346777888888889899999987653
No 181
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=58.68 E-value=32 Score=33.21 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 47 AVFSLLVKCSYQVTS--VRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 47 ~L~~lL~~~gyeV~~--Asdg~EALe~L~~~~~~PDLIILDi~MP~-----mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
.+...|+..|+.+.. +..+...++.+... .||.|-+|..+.. .....+++.|.......++ -|++++-++
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~via~gVe~ 212 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKRL--PVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL-KVVAEGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHhC--CCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 345556778998764 45677777777765 7999999965431 2334555555543322344 445777788
Q ss_pred HHHHHHHHHcCCC----EEEeCCCCH
Q 008655 120 VSVVVKCLRLGAA----DYLVKPLRT 141 (558)
Q Consensus 120 ~e~a~eAL~~GA~----DYL~KP~~~ 141 (558)
.+....+.++|++ .|+.||...
T Consensus 213 ~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHcCCCeeeeceeccCCCC
Confidence 8888899999994 346677653
No 182
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=58.60 E-value=12 Score=36.63 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=37.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
|||||..-.+-..|.+.|.+.|+++.+....+..++.+... .||.||+-=
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIlsg 51 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMISP 51 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEECC
Confidence 89999999999999999999998887666543334444433 688888753
No 183
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=58.51 E-value=84 Score=30.09 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=50.9
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH
Q 008655 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (558)
Q Consensus 57 yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~m-------DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~ 128 (558)
..|. .+.+.+++.+.... .+|.|++.--.|.. -|++.++++.+. ..+||+.+-+-+ .+.+.++++
T Consensus 96 ~~ig~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~---~~~pv~AlGGI~-~~~i~~l~~ 168 (180)
T PF02581_consen 96 KIIGASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARA---SPIPVYALGGIT-PENIPELRE 168 (180)
T ss_dssp SEEEEEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH---TSSCEEEESS---TTTHHHHHH
T ss_pred eEEEeecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHh---CCCCEEEEcCCC-HHHHHHHHH
Confidence 3444 88899997766543 58999998865543 389999999876 568999998754 344667889
Q ss_pred cCCCEEE
Q 008655 129 LGAADYL 135 (558)
Q Consensus 129 ~GA~DYL 135 (558)
.||..+-
T Consensus 169 ~Ga~gvA 175 (180)
T PF02581_consen 169 AGADGVA 175 (180)
T ss_dssp TT-SEEE
T ss_pred cCCCEEE
Confidence 9998874
No 184
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=58.45 E-value=1.9e+02 Score=31.07 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=65.4
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCC--
Q 008655 33 VRILLCDN----DSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTK-- 92 (558)
Q Consensus 33 irVLIVDD----d~~~r~~L~~lL~~~g-yeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----------~mD-- 92 (558)
..++++|- +..+.+.++.+-+..+ ..|+ -..+.+.|..++.. ..|.|.+-+.-- +..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~ 185 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGW 185 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCch
Confidence 46677775 2555555666554443 3333 24588888888765 478877553211 111
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+++.+..+... ..+|||.-.+-.....+.+||.+||+....
T Consensus 186 ~l~ai~ev~~a---~~~pVIadGGIr~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 186 QLAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred HHHHHHHHHHh---cCCeEEEECCcCcHHHHHHHHHcCCCEEee
Confidence 45677777764 468999888888889999999999998854
No 185
>PLN02591 tryptophan synthase
Probab=58.28 E-value=29 Score=35.67 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=42.4
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~------~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
+.++++++++.. ..+|+|+|+=. .-.....+|.++|+++.|.-.+..+|....+..+
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 467888888743 57899988843 3355688899999999999988887766554443
No 186
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.16 E-value=1.8e+02 Score=30.49 Aligned_cols=95 Identities=9% Similarity=0.164 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc-C
Q 008655 34 RILLCDNDSNSSDAVFSLLV----KCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK-E 105 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~gy--eV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~-~ 105 (558)
.|||=|.+..+...+...+. ..++ .| +.+.+.+||++.+.. .+|+|.+|= |+--++-+.++... .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~~e~l~~~v~~~~~~ 226 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MSVEEIKEVVAYRNAN 226 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhhcc
Confidence 35555555444433334332 3443 23 388899999999975 589999883 33322222222111 1
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+. .+|..++.-+.+.+.+..+.|++-+..
T Consensus 227 ~~~-~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 227 YPH-VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCC-eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 123 356677777999999999999987743
No 187
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=58.11 E-value=84 Score=39.35 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~-mDG-lElL~~Ir~ 102 (558)
+.+|||. |-+..=..++.-+|+..||+|+... ..++.++.+.+. +||+|-+...|.. +.. .++++.|++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~--~~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH--NADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcccccHHHHHHHHHHHHh
Confidence 4577777 5555555666677788899998544 578888888776 8999999887764 443 456778877
Q ss_pred hcCCCCceEEEEecCCCHHHHHH---HHHcCCCEEEeCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVK---CLRLGAADYLVKP 138 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~e---AL~~GA~DYL~KP 138 (558)
.. ..+||++=-+-.+.+.+.. ....||+.|..=.
T Consensus 810 ~g--~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA 846 (1178)
T TIGR02082 810 RG--ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDA 846 (1178)
T ss_pred cC--CCceEEEeccccchhHHHhhhhhhccCCeEEecCH
Confidence 54 4677776655444444432 2234888876533
No 188
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=57.99 E-value=1.1e+02 Score=31.26 Aligned_cols=71 Identities=15% Similarity=0.029 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 45 SDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
...++..+++.|.+|+. ..|....+..+... .||+|++-.. ..++..+++.+++.. ...+++..++.
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~~--~~~~~~~~~~~~~~G--~~~~~~~~~~~ 227 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG--GPDALVVIGY--PETGSGILRSAYEQG--LFDKFLLTDGM 227 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEecc--cchHHHHHHHHHHcC--CCCceEeeccc
Confidence 34556677777877652 23667777777665 7999987643 347888889888754 35566655443
Q ss_pred CCHH
Q 008655 118 DEVS 121 (558)
Q Consensus 118 ~d~e 121 (558)
.+..
T Consensus 228 ~~~~ 231 (312)
T cd06346 228 KSDS 231 (312)
T ss_pred cChH
Confidence 4433
No 189
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=57.96 E-value=1.4e+02 Score=30.96 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHHHHHH
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY------LVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY------L~KP~~~eeL~~~L~~llr~ 154 (558)
++.+.+|++. ..+|||..-+-.+.+.+.+++..||+.+ +.+|.-..++..-+.+++..
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3667777764 4689999999999999999999998764 55664445555555555443
No 190
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.76 E-value=1.9e+02 Score=32.09 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=62.5
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------C--CCH
Q 008655 32 KVRILLCDND----SNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP---------M--TKG 93 (558)
Q Consensus 32 ~irVLIVDDd----~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP---------~--mDG 93 (558)
...|++||-. ..+...++.+=... +..|+ -+.+.++|..++.. ..|.|..-+.-- + ...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCCh
Confidence 4677887752 23333333332222 23333 57789999988864 489887654211 0 123
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++++..+.+......+|||.=.+-.....+.+||.+||+.++.
T Consensus 242 ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 242 ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4444444332212468998888888999999999999999864
No 191
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=57.47 E-value=24 Score=40.21 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=70.8
Q ss_pred EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 58 QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 58 eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
-|+.+.+.-..++.+... ...++.+.-+.- .-+.-..++++++ ..+.+|| .+.-..+.+.++...|+.+|
T Consensus 111 avv~~~~~~~~~~~~~~~-l~~~i~~~~~~~-~~e~~~~v~~lk~----~G~~~vv-G~~~~~~~A~~~g~~g~~~~--- 180 (538)
T PRK15424 111 GVVTYQETIPALVAFQKT-FNLRIEQRSYVT-EEDARGQINELKA----NGIEAVV-GAGLITDLAEEAGMTGIFIY--- 180 (538)
T ss_pred EEEecCcccHHHHHHHHH-hCCceEEEEecC-HHHHHHHHHHHHH----CCCCEEE-cCchHHHHHHHhCCceEEec---
Confidence 345555544455544332 134444433321 2245556667765 3455554 33333566667777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhh-----h-hc-ccccc-ccccCCCC----------CCCCCcceeeecCCcccccc
Q 008655 138 PLRTNELLNLWTHMWRRRRMLGLAE-----K-NI-LSYDF-DLVASDPS----------DANTNSTTLFSDDTDDKSRR 198 (558)
Q Consensus 138 P~~~eeL~~~L~~llr~~r~~~l~~-----r-~~-~~~~~-~lvgssp~----------~a~s~~tvLi~ges~~~~~~ 198 (558)
+.+.|..++..+++..++..... + .. ....+ ++++.++. .+.++.++||.||+++.+..
T Consensus 181 --s~e~i~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~ 257 (538)
T PRK15424 181 --SAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKEL 257 (538)
T ss_pred --CHHHHHHHHHHHHHHHHHHhhhhhccchhhhhccccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 45778877777765443322111 0 01 11122 27777765 35678899999999997754
No 192
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.36 E-value=1.1e+02 Score=33.61 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=64.4
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDND---SNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd---~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.++++|+.+. +.....+.+++...+. .|.... ..+..+.+. ..|++++--. ...-|+.+++.+.
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma----- 392 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA----- 392 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH-----
Confidence 3566666433 3445555556555553 233333 333444443 3577776543 2334667777765
Q ss_pred CCceEEEEecCCCHHHHHHHHHc------CCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRL------GAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~------GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||. |..... .+.+.. |..+++..|.+.++|...+..++..
T Consensus 393 ~G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 393 AGIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred cCCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 5678876 443332 233444 7789999999999999999988764
No 193
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.21 E-value=48 Score=36.61 Aligned_cols=55 Identities=11% Similarity=0.211 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 78 DIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 78 ~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
..|+|++|..-+. ..-++++++|+.. +++++| |+..-.+.+.+..++++||+...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDL-IAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcE-EEEecCCHHHHHHHHHcCCCEEE
Confidence 5999999998774 5667889999874 356664 34555667788899999998875
No 194
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.12 E-value=39 Score=34.88 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSA------QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa------~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
+.+++++++++. ...+|+|+++= +.-.....++.++|+++.|.-.+..++....+..
T Consensus 75 ~~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~ 137 (258)
T PRK13111 75 DVFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAA 137 (258)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH
Confidence 457778888743 36789998883 3445678899999999999977777665554443
No 195
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=57.09 E-value=86 Score=32.61 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=47.4
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.+.+.+++.+.+.. .+|.|.+|-.-|. +--++++.++.. .+++|++++-+ -+.+.+.+.++.||+.+..
T Consensus 188 Vev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 478899999998754 5899999955442 212344445432 24677665544 4678888999999988743
No 196
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=56.60 E-value=2.3e+02 Score=28.65 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=64.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSN---SSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~---~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.++++|+.+... ....+...+...+. .|.......+..+.+. ..|++++=-.-++.-|..+++.+.
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~----~ad~~i~ps~~~e~~~~~l~EA~a----- 286 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA----LADIVVSASTEPEAFGRTAVEAQA----- 286 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH----hCCEEEecCCCCCCCchHHHHHHh-----
Confidence 467777765432 33334444444442 3444444444555554 357776643234455677777765
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
..+|||+. .... ..+.+..|..+++..+.+.++|...+..++
T Consensus 287 ~G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 287 MGRPVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred cCCCEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 56788753 3332 244666777899999999999999886544
No 197
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=55.32 E-value=1.6e+02 Score=31.33 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=59.9
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC------------CCC
Q 008655 32 KVRILLCDN----DSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP------------MTK 92 (558)
Q Consensus 32 ~irVLIVDD----d~~~r~~L~~lL~~~g-yeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP------------~mD 92 (558)
.+.+++||- .....+.++.+-+..+ ..|. .+.+.+.|..++.. ..|.|++.+. | +..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~g-~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGIG-PGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECCC-CCcCcccceeCCCCCC
Confidence 467777763 2333333333332222 4443 46678888887754 4888886321 1 112
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
-+.++..+.+......+|||.--+-.+...+.+|+.+||+....
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 34444555433211368988666778889999999999998864
No 198
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=55.22 E-value=1.5e+02 Score=30.46 Aligned_cols=67 Identities=7% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
....+...+++.|++|.. ..+....+..+... .+|+|++... ..+...+++.+++.. ...++++++.
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~~--~~~~~~~~~~~~~~g--~~~~~~~~~~ 230 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAGH--FPDAVLLVRQMKELG--YNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECCc--chhHHHHHHHHHHcC--CCCCEEEEec
Confidence 345566677777887652 13455566666654 7999997653 446778888888754 3456665544
No 199
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=55.16 E-value=2.3e+02 Score=30.56 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=69.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCC---CCC--HHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLP---MTK--GLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~MP---~mD--GlElL~~Ir~ 102 (558)
.++++||.+-+. +..+..++...|. .|.... +.++..+.+.. .|+.++-.... .++ |+.+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 467777777654 4566677766653 243322 45666666653 58777643211 123 345666654
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
..+|||.. .... ..+.+..|..+++..|-+.++|...|..++.
T Consensus 327 ----~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 56788753 3332 3456778999999999999999999998876
No 200
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=55.11 E-value=1.1e+02 Score=38.51 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=68.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~-mDG-lElL~~Ir~ 102 (558)
..+|||. |-+..=...+.-+|+..||+|+... ..++.++.+.++ +||+|.+..-|.. +.. .++++.|++
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~--~~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE--NADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 4577777 6666666667778888899998544 578888888776 8999999887754 443 456778877
Q ss_pred hcCCCCceEEEEecCCCHHHH-HH--HHHcCCCEEEeCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVV-VK--CLRLGAADYLVKP 138 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a-~e--AL~~GA~DYL~KP 138 (558)
.. ..+||++--+..+...+ .+ .--.||+-|..=.
T Consensus 829 ~g--~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 829 QG--FTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred cC--CCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 54 56777766554443321 11 1112888776533
No 201
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.84 E-value=80 Score=30.74 Aligned_cols=68 Identities=9% Similarity=0.183 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC--SYQVTSVR------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~--gyeV~~As------dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
...+|.++...+.+.+.+.+.|... +.+|.... ..++.++.+.+. .||+|++-+.+|.-.- ++.+.+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI--WMRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH--HHHHhHH
Confidence 4579999999999999999988765 46654321 123446666665 7999999999998653 3445543
No 202
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=54.76 E-value=2.8e+02 Score=29.15 Aligned_cols=108 Identities=13% Similarity=0.227 Sum_probs=68.7
Q ss_pred cEEEEEeCC---H-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 33 VRILLCDND---S-NSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 33 irVLIVDDd---~-~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
++++||.+. . .....+..+....+. .|.... +.++..+++. ..|+.++-.. .+.-|+.+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~----~ad~~v~ps~-~E~~g~~~lEAma--- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYR----AADVVAVPSY-NESFGLVAMEAQA--- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHH----hCCEEEECCC-CCCcChHHHHHHH---
Confidence 667777641 1 334556666666553 344322 4566666665 3587776533 3344677777775
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||...... ..+.+..|...++..|.+.++|.+.+.+++..
T Consensus 325 --~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 325 --CGTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLDD 368 (405)
T ss_pred --cCCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHhC
Confidence 567998654322 22456778899999999999999999888764
No 203
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=54.72 E-value=75 Score=33.36 Aligned_cols=87 Identities=9% Similarity=0.200 Sum_probs=57.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--cCCCceEEEEeCCCCCCC--HHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA--EGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~--~~~~PDLIILDi~MP~mD--GlElL~~Ir~~~~~~ 107 (558)
...++++||....+.+|..+=-....--....+.++.+..|.. ....-=.++.|-.||..+ |..+++..+. .
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~----~ 105 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAARE----A 105 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHH----c
Confidence 4679999999998876665422222111233456555555432 111345677899999863 9999999987 5
Q ss_pred CceEEEEecCCCHHH
Q 008655 108 RIPVIMMSAQDEVSV 122 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~ 122 (558)
+++|+.+.+-...-.
T Consensus 106 gi~V~~lPG~sA~~t 120 (275)
T COG0313 106 GIRVVPLPGPSALIT 120 (275)
T ss_pred CCcEEecCCccHHHH
Confidence 689999988665333
No 204
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.51 E-value=76 Score=31.92 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+... --.++++|+..-++ .-+++++.|.+. ..+||++-.+-.+.+.+.+++++||+..+.
T Consensus 147 ~~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 356666766543 23689999976553 236778888764 578999888899999999999999998875
No 205
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=54.38 E-value=50 Score=31.95 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLLV----KCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~g--yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.|||=|.+-.+.-.+.+.++ ..+ ..| +.+.+.+++.+.+.. .+|+|.+|=.-| .+--++++.|+...
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~-- 125 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELN-- 125 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHT--
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcC--
Confidence 35555555443333333332 223 224 388999999999875 599999995433 23334555555543
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+ -..|.+|+--+.+.+.+..+.|++-+-
T Consensus 126 ~-~v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 126 P-RVKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp T-TSEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred C-cEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2 367778887777888888899976653
No 206
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=54.32 E-value=87 Score=36.09 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=55.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.++++|.|+...+.+ ++.|+.++..+ +-.+.++.+.-. +.|+|++-..=+ .+-+.++..+++.. ++++
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~d~-~~n~~i~~~~r~~~--p~~~ 493 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGAE--KAEAIVITCNEP-EDTMKIVELCQQHF--PHLH 493 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeCCH-HHHHHHHHHHHHHC--CCCe
Confidence 45667777766644332 33465555333 334444444333 567766655432 23455666777643 6777
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
||+-+. +.+...+..++||+..+.--
T Consensus 494 IiaRa~--~~~~~~~L~~~Ga~~vv~e~ 519 (601)
T PRK03659 494 ILARAR--GRVEAHELLQAGVTQFSRET 519 (601)
T ss_pred EEEEeC--CHHHHHHHHhCCCCEEEccH
Confidence 775544 44567788899999887543
No 207
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=54.15 E-value=2e+02 Score=30.39 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNE 143 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~ee 143 (558)
+.++..+.+.. .|+.++- ..|..-|+.+++.+. ..+|||.. .... ..+.+..|..+++..|.+.++
T Consensus 290 ~~~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA-----~G~PVIas-~~~g---~~e~i~~~~~G~lv~~~d~~~ 355 (396)
T cd03818 290 PYDQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMA-----CGCLVVGS-DTAP---VREVITDGENGLLVDFFDPDA 355 (396)
T ss_pred CHHHHHHHHHh----CcEEEEc-CcccccchHHHHHHH-----CCCCEEEc-CCCC---chhhcccCCceEEcCCCCHHH
Confidence 34566666643 4666542 335555667777664 67788853 3222 345667788999999999999
Q ss_pred HHHHHHHHHHH
Q 008655 144 LLNLWTHMWRR 154 (558)
Q Consensus 144 L~~~L~~llr~ 154 (558)
|...+..++..
T Consensus 356 la~~i~~ll~~ 366 (396)
T cd03818 356 LAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 208
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=54.11 E-value=84 Score=32.53 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=53.5
Q ss_pred hCCCEEEEECCH-----HHHH---H-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 54 KCSYQVTSVRSP-----RQVI---D-ALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 54 ~~gyeV~~Asdg-----~EAL---e-~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
+.+++|..+.+| +++- . ++.+ +.||++|+=---|...|-.-.+++... ..+|.|++|....... .
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~-~ 102 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKV-K 102 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccch-H
Confidence 446777766653 3332 2 3344 489999986655666676666776654 6789999997655443 3
Q ss_pred HHHHcCCCEEEeCCC
Q 008655 125 KCLRLGAADYLVKPL 139 (558)
Q Consensus 125 eAL~~GA~DYL~KP~ 139 (558)
++|+..-++||.-+.
T Consensus 103 d~l~~~g~GYIivk~ 117 (277)
T PRK00994 103 DAMEEQGLGYIIVKA 117 (277)
T ss_pred HHHHhcCCcEEEEec
Confidence 888888888866554
No 209
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=53.99 E-value=1.5e+02 Score=30.92 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=64.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.++++||.+-+. +..+.++....+. .|... .+..+.+..+-. ..|++++--.. ..=|+.+++.+.
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~~-Egf~~~~lEAma----- 279 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSKF-EGFPMTLLEAMS----- 279 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCcc-cCcChHHHHHHH-----
Confidence 456677766543 4445555554442 24332 233233222211 24666653221 223677777765
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
..+|||..-.... ..+.+..|..+++..|.+.++|.+.+..++...
T Consensus 280 ~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 280 YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 5689975331333 335667788999999999999999999887654
No 210
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=53.87 E-value=75 Score=36.80 Aligned_cols=94 Identities=13% Similarity=0.292 Sum_probs=56.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+.+||.|+...+.+ ++.|+.|+..+ +-.+.++...-. +.+++++-..-+. .-+.++..+++. +++++
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi~--~A~~vvv~~~d~~-~n~~i~~~ar~~--~p~~~ 493 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGAA--KAEVLINAIDDPQ-TSLQLVELVKEH--FPHLQ 493 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcCCC--cCCEEEEEeCCHH-HHHHHHHHHHHh--CCCCe
Confidence 46677778777654433 33567665433 333445444333 6777777664332 235566667664 37778
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
||+-+ .+.+...+..++||+..+.
T Consensus 494 iiaRa--~d~~~~~~L~~~Gad~v~~ 517 (621)
T PRK03562 494 IIARA--RDVDHYIRLRQAGVEKPER 517 (621)
T ss_pred EEEEE--CCHHHHHHHHHCCCCEEeh
Confidence 76654 3456677788899997753
No 211
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=53.59 E-value=30 Score=38.32 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCHHHHHHHHH--HHHhCCC---------------EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC
Q 008655 31 SKVRILLCDNDSNSSDAVFS--LLVKCSY---------------QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TK 92 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~--lL~~~gy---------------eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mD 92 (558)
++-+.+||||+-.+..+|.+ +.+..+| -|.+-.+.++-++++... ..|+|++|..--. .-
T Consensus 201 kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~a--GvdvviLDSSqGnS~~ 278 (503)
T KOG2550|consen 201 KKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQA--GVDVVILDSSQGNSIY 278 (503)
T ss_pred hcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhhhc--CCcEEEEecCCCcchh
Confidence 34567888887766554433 2222222 123445677888888765 6899999986433 34
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
-++++++|++. +|++.||- ..--..+.+...+.+||+..
T Consensus 279 qiemik~iK~~--yP~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 279 QLEMIKYIKET--YPDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred HHHHHHHHHhh--CCCceeec-cceeeHHHHHHHHHccCcee
Confidence 67899999986 47777761 11223456777889999875
No 212
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=53.52 E-value=18 Score=35.07 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
|||||....+-..|..+|...|++|....+..--++.+... .||.||+.=
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsg 51 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISP 51 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcC
Confidence 89999999999999999999998887666443223334433 688877653
No 213
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.37 E-value=1.7e+02 Score=29.32 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=62.9
Q ss_pred HHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce-E-EEEecCCCHHHHHH
Q 008655 49 FSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP-V-IMMSAQDEVSVVVK 125 (558)
Q Consensus 49 ~~lL~~~g-yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP-V-IVLSa~~d~e~a~e 125 (558)
.+.|...+ .-|+...+.++++..++.. ..--+=++.+.|-.-+.++.++.|++.. ++-| + |=.-+--+.+.+.+
T Consensus 7 ~~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGaGTV~~~~~~~~ 83 (213)
T PRK06552 7 LTKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVELY--KDDPEVLIGAGTVLDAVTARL 83 (213)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHHc--CCCCCeEEeeeeCCCHHHHHH
Confidence 35566666 4566777888888887653 1334556777777778999999998753 2222 2 22234567888999
Q ss_pred HHHcCCCEEEeCCCCHHHHHHH
Q 008655 126 CLRLGAADYLVKPLRTNELLNL 147 (558)
Q Consensus 126 AL~~GA~DYL~KP~~~eeL~~~ 147 (558)
|+++||.-.++ |.-..++.+.
T Consensus 84 a~~aGA~Fivs-P~~~~~v~~~ 104 (213)
T PRK06552 84 AILAGAQFIVS-PSFNRETAKI 104 (213)
T ss_pred HHHcCCCEEEC-CCCCHHHHHH
Confidence 99999986665 6555555443
No 214
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=53.31 E-value=1.4e+02 Score=27.32 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=40.0
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 78 DIDLILAEVDLPMTKG-------LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 78 ~PDLIILDi~MP~mDG-------lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..|.|.++-..+...+ ...+..++. ...+||++..+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 5788888877665332 234444443 2678999988888878899999999987753
No 215
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=53.10 E-value=41 Score=34.84 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~------~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
+.+++++++++. ..+|+|+++=. .-.....+|.++|++.+|...+..++....+..
T Consensus 78 ~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~ 139 (263)
T CHL00200 78 KILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISV 139 (263)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 467888888743 67899888843 445678899999999999988877765544433
No 216
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=52.83 E-value=2.9e+02 Score=29.96 Aligned_cols=68 Identities=26% Similarity=0.408 Sum_probs=50.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~D 133 (558)
.+.+..++.+.... .+|.|++.--.|. .-|++.++++.+. ..+||+.+-+-. .+.+.+++..||+.
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~---~~iPv~AiGGI~-~~ni~~l~~~Ga~g 318 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE---APIPWFAIGGID-KSNIPEVLQAGAKR 318 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHHHHHHcCCcE
Confidence 67788888777654 5899987654432 3478889998764 568999987754 66778899999988
Q ss_pred EE
Q 008655 134 YL 135 (558)
Q Consensus 134 YL 135 (558)
+-
T Consensus 319 VA 320 (347)
T PRK02615 319 VA 320 (347)
T ss_pred EE
Confidence 84
No 217
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=52.58 E-value=1.3e+02 Score=31.73 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=60.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCE--E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLLVK----CSYQ--V-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~----~gye--V-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
-|||=|.+....-.+.+.+++ .++. | +.+.+.+++.+.+.. .+|+|++|= |+.-++-+.+... ..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDN----m~~e~~~~av~~l-~~ 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDN----MSPEELKEAVKLL-GL 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecC----CCHHHHHHHHHHh-cc
Confidence 477777777666555555543 3542 3 378899999999976 499999994 3333333333221 11
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
..-.++=.|+.-+.+.+.+....|++-+
T Consensus 232 ~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 232 AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 3345666778888888888888887654
No 218
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=52.55 E-value=62 Score=32.79 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~~d------~e~a~eAL~~GA~DYL~KP~~~eeL~~~L 148 (558)
.+++++++++.. ..+|+++++-... ...+.++.++|++.++.-.+..+++...+
T Consensus 63 ~~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~ 122 (242)
T cd04724 63 DVLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFR 122 (242)
T ss_pred HHHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 456777777754 3678888776443 56788899999999998666665544333
No 219
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=52.31 E-value=71 Score=30.79 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=59.8
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 47 AVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 47 ~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~-----mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
.....|+..|+.+. -+..+..-+..+... +||.|-+|..+-. .....+++.|........+. |+.++-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 44556677898876 355667777777765 7999999975431 11334555555433223444 45677788
Q ss_pred HHHHHHHHHcCCC----EEEeCCCCH
Q 008655 120 VSVVVKCLRLGAA----DYLVKPLRT 141 (558)
Q Consensus 120 ~e~a~eAL~~GA~----DYL~KP~~~ 141 (558)
.+....+.++|++ .|+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 8888889999985 347777654
No 220
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.27 E-value=53 Score=30.84 Aligned_cols=83 Identities=7% Similarity=0.164 Sum_probs=45.0
Q ss_pred CcEEEEEeCCHHHHH-----------HHHHHHHhC---CCEEE-EECC---HHHHHHHHHh-cCCCceEEEEeCCCCCC-
Q 008655 32 KVRILLCDNDSNSSD-----------AVFSLLVKC---SYQVT-SVRS---PRQVIDALNA-EGSDIDLILAEVDLPMT- 91 (558)
Q Consensus 32 ~irVLIVDDd~~~r~-----------~L~~lL~~~---gyeV~-~Asd---g~EALe~L~~-~~~~PDLIILDi~MP~m- 91 (558)
+++|+++.|+-.... .+...|.+. ++.+. .+-+ ..+.++.+.. ...+||+|++-+..-+.
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~ 81 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVT 81 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcC
Confidence 356777776655442 244555432 44544 3333 3444555542 22489999995433221
Q ss_pred ----------CHHHHHHHHHhhcCCCCceEEEEec
Q 008655 92 ----------KGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 92 ----------DGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+=.++++.|++. .+.++||+++.
T Consensus 82 ~~~~~~~~~~~l~~li~~i~~~--~~~~~iiv~~~ 114 (191)
T cd01836 82 HLTSIARWRKQLAELVDALRAK--FPGARVVVTAV 114 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh--CCCCEEEEECC
Confidence 112456666653 26788888874
No 221
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.20 E-value=1.4e+02 Score=31.67 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=57.8
Q ss_pred EEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCCC
Q 008655 34 RILLCD--NDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDA----------------LNAEGSDIDLILAEVDLPMTK 92 (558)
Q Consensus 34 rVLIVD--Dd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~----------------L~~~~~~PDLIILDi~MP~mD 92 (558)
+|+||- +.+. ....|...|...|++|....+....+.. .......+|+||+= |.|
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~l----GGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVL----GGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEE----cCC
Confidence 477773 2333 3355666677778888765433222110 00111146776652 678
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
| .+|+..+... ...+||+-+-. |=..||. .+..+++...+.++++.
T Consensus 83 G-T~L~aar~~~-~~~~PilGIN~-------------G~lGFL~-~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 83 G-TILRAAELAR-AADVPVLGVNL-------------GHVGFLA-EAEAEDLDEAVERVVDR 128 (306)
T ss_pred H-HHHHHHHHhc-cCCCcEEEEec-------------CCCceec-cCCHHHHHHHHHHHHcC
Confidence 8 3445554422 25689886543 6677887 46778888888887764
No 222
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=51.90 E-value=1.9e+02 Score=26.29 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
..+.++|+.+.... ..+.......+. .+.... ...+..+++.. .|++++=... +.-|..+++.+.
T Consensus 46 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~----- 114 (172)
T PF00534_consen 46 PNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA----- 114 (172)
T ss_dssp TTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH-----
T ss_pred CCeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc-----
Confidence 35677888744333 335555554443 343333 34466666654 5777776555 445667777775
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
..+|||+ +... ...+.+..+..+++..+.+.++|...+..++....
T Consensus 115 ~g~pvI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 115 CGCPVIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp TT-EEEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred cccceee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 4567774 3322 34567788889999999999999999999887653
No 223
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=51.72 E-value=2.4e+02 Score=27.50 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=64.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS--YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g--yeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.++++|+.+.. ....+...+...+ -.|. -.-+.++..+++.. .|++++-... +.-|..+++.+. .
T Consensus 230 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~-----~ 298 (374)
T cd03801 230 DVRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA-----A 298 (374)
T ss_pred CeEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-ccccchHHHHHH-----c
Confidence 36666666443 3444444443322 1232 23344666666653 5777764433 334566777665 4
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|||+..... ..+.+..+-..++..+.+.++|.+.+..++..
T Consensus 299 g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 299 GLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred CCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 67877544322 23345557888999999999999998887654
No 224
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=51.65 E-value=1.4e+02 Score=29.30 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=54.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeC-CCCC-CCHHHHHHHHHhhcC
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEV-DLPM-TKGLKMLKYITRDKE 105 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~As-------dg~EALe~L~~~~~~PDLIILDi-~MP~-mDGlElL~~Ir~~~~ 105 (558)
|||-|-|...++.+...-.+.|.++++.+ +|++.++++.+....|=+|+.|- ...+ ..|-++|+.+...
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h-- 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANH-- 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcC--
Confidence 56667777778888777778898887554 58999999987644566666654 4554 4688889988764
Q ss_pred CCCceEE
Q 008655 106 LQRIPVI 112 (558)
Q Consensus 106 ~~~iPVI 112 (558)
+.+-|+
T Consensus 81 -~~IeVL 86 (180)
T PF14097_consen 81 -PDIEVL 86 (180)
T ss_pred -CCceEE
Confidence 566665
No 225
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.57 E-value=60 Score=33.34 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=41.0
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~~d------~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
+.++++++|++.. ..+|+++|+-... ...+.++.++|++.+|......++....+..
T Consensus 73 ~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 73 KCFELLKKVRQKH--PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 4567788887532 5689887775543 5678899999999999988877765554433
No 226
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.55 E-value=2.8e+02 Score=28.30 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=37.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC----CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ----DEVSVVVKCLRLGAADYLVKPL--RTNELLNLWTHMW 152 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~----~d~e~a~eAL~~GA~DYL~KP~--~~eeL~~~L~~ll 152 (558)
.|++++.- + +..+++.+. ..+|||++... .......+.+..+-..++..+- +.++|.+++..++
T Consensus 253 ad~~v~~s---g--~~t~~Eam~-----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA-----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH-----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 57776522 2 445555554 56899886422 1112222333333456777664 8899999998887
Q ss_pred HH
Q 008655 153 RR 154 (558)
Q Consensus 153 r~ 154 (558)
..
T Consensus 323 ~~ 324 (350)
T cd03785 323 SD 324 (350)
T ss_pred cC
Confidence 53
No 227
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=51.35 E-value=3.3e+02 Score=29.91 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=58.6
Q ss_pred HHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEEEeCCC----CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 48 VFSLLVKCSYQVTS----VRSPRQVIDALNAEGSDIDLILAEVDL----PMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 48 L~~lL~~~gyeV~~----Asdg~EALe~L~~~~~~PDLIILDi~M----P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
+.+.+++.|..+.. ..+..+.+..+.+. ..|.|.+.... ....+++.+++++.. .++||++.-+- .
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI-~ 172 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC-C
Confidence 44445556765543 22433333333333 57888765321 124677888888864 45898887765 5
Q ss_pred HHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 008655 120 VSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMW 152 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~ll 152 (558)
.+.+.+++..||+.++. +.-+..+....+++.+
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i 210 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHH
Confidence 67788999999987744 3334444444444433
No 228
>PRK12704 phosphodiesterase; Provisional
Probab=51.34 E-value=17 Score=41.36 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=39.3
Q ss_pred eEEEEecCCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVS--VVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e--~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|+||+.+... .+..+|+.|+.|+..||+..+++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 578899988866 899999999999999999999999888776653
No 229
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.32 E-value=1.8e+02 Score=32.13 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=51.3
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCC--CHHHHHHHHHhhcC
Q 008655 32 KVRILLCDNDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD-LPMT--KGLKMLKYITRDKE 105 (558)
Q Consensus 32 ~irVLIVDDd~~~---r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~-MP~m--DGlElL~~Ir~~~~ 105 (558)
..+|.+|+-|+.- ...|..+-...++.+..+.+..+....+... ..+|+||+|.- +... ..++.+..+.....
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 4689999988742 2233333344566666677777776666554 26899999963 1112 23344444443111
Q ss_pred CCCceEEEEecCCCHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVK 125 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~e 125 (558)
.+.-.++++++......+.+
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred CCCeEEEEEECCCCHHHHHH
Confidence 12233667776555444333
No 230
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=50.94 E-value=1.5e+02 Score=30.43 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++++||.+.+.. ..+...+ .....+.-.-+.++..+++.. .|+.++-.. ..-|+.+++.+. ..+|||
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama-----~G~Pvi 288 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA-----SGTPVI 288 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH-----cCCCEE
Confidence 678888877653 3333311 122333333466777777753 577776544 334566666664 567998
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
.... .. ..+.+..|..+++..|-+.++|.+.|..++...
T Consensus 289 ~~~~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 289 AYGK-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred EeCC-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 7543 22 223456677899999999999999998887643
No 231
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=50.83 E-value=1.2e+02 Score=35.17 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~-----mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
......|++.|+.+. -+.++...+..|... .||.|-+|-.+-. .....+++.|.......++. ++..+-+
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l--~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-via~gVe 757 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVSL--PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT-VVAEGVE 757 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhhC--CCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-EEEEcCC
Confidence 344556778899876 467888888888766 7999999975421 12344555554432224454 4456778
Q ss_pred CHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHHH
Q 008655 119 EVSVVVKCLRLGAA----DYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 119 d~e~a~eAL~~GA~----DYL~KP~~~eeL~~~L~~ 150 (558)
+.+....+.++|++ .|+.||...++|...++.
T Consensus 758 ~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 758 TKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred CHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 88888889999996 358899999998876543
No 232
>PRK04302 triosephosphate isomerase; Provisional
Probab=50.68 E-value=2.6e+02 Score=27.71 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCCC---------CCH-HHHHHHHHhhcCCCCceEEEEecCC
Q 008655 51 LLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLPM---------TKG-LKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 51 lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP~---------mDG-lElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
.....|..++ ++.+.+++.. +... .+|+|-+.- ..-+ -.+ .++++.|++.. ..+|||.-.+-.
T Consensus 109 ~a~~~Gl~~I~~v~~~~~~~~-~~~~--~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~--~~~pvi~GggI~ 183 (223)
T PRK04302 109 RAKKLGLESVVCVNNPETSAA-AAAL--GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN--PDVKVLCGAGIS 183 (223)
T ss_pred HHHHCCCeEEEEcCCHHHHHH-HhcC--CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc--CCCEEEEECCCC
Confidence 3345687755 5566666554 3333 578775432 1111 112 34556666532 468999888888
Q ss_pred CHHHHHHHHHcCCCEEEeCC
Q 008655 119 EVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 119 d~e~a~eAL~~GA~DYL~KP 138 (558)
+.+.+.+++..||+.++.-.
T Consensus 184 ~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 184 TGEDVKAALELGADGVLLAS 203 (223)
T ss_pred CHHHHHHHHcCCCCEEEEeh
Confidence 89999999999999997643
No 233
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=50.67 E-value=3.1e+02 Score=28.43 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=38.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC----CCHH-HHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ----DEVS-VVVKCLRLGAADYLVKPLR--TNELLNLWTHM 151 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~----~d~e-~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~l 151 (558)
.|++++.- + +..+++.+. ..+|+|++... .+.. ......+.|+ .++..+-+ .+.|.+.+..+
T Consensus 253 ~d~~i~~~---g--~~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 253 ADLVICRA---G--ASTVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred CCEEEECC---C--HHHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHH
Confidence 57777621 1 344555543 56899887531 2222 2333445555 66666655 89999999988
Q ss_pred HHH
Q 008655 152 WRR 154 (558)
Q Consensus 152 lr~ 154 (558)
+..
T Consensus 322 l~~ 324 (357)
T PRK00726 322 LSD 324 (357)
T ss_pred HcC
Confidence 754
No 234
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.37 E-value=1e+02 Score=31.17 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMT-KG--LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~m-DG--lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.++.+...+ --.+|++|+..-++ .| +++++++.+. ..+|||+-.+-.+.+.+.+++++|++..+.
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55566665442 23799999976553 33 6778888764 578999888889999999999999999875
No 235
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=50.31 E-value=34 Score=33.18 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
|||||....+-..|.++|.+.|+++....+.+..++.+... .||.||+-=
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~ 51 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISP 51 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcC
Confidence 89999999999999999999998877665543223334333 688888754
No 236
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=50.28 E-value=1.4e+02 Score=31.43 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=40.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEe
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-----SVRSPRQVIDALNAEGSDIDLILAE 85 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-----~Asdg~EALe~L~~~~~~PDLIILD 85 (558)
.+-+||-+|-|+..++.-...-++.+..+. .-.-++...++|... +|||+++=
T Consensus 103 ~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViT 160 (283)
T TIGR02855 103 MPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV--RPDILVIT 160 (283)
T ss_pred CCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh--CCCEEEEe
Confidence 378999999999998888777777775433 334567777788776 89988863
No 237
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.80 E-value=83 Score=33.08 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=60.0
Q ss_pred CCCCcEEEEE--eCCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEeCCCCCCCHHHH
Q 008655 29 DRSKVRILLC--DNDSNSS---DAVFSLLVKCSYQVTSVRSPRQVIDA-------LNAEGSDIDLILAEVDLPMTKGLKM 96 (558)
Q Consensus 29 ~m~~irVLIV--DDd~~~r---~~L~~lL~~~gyeV~~Asdg~EALe~-------L~~~~~~PDLIILDi~MP~mDGlEl 96 (558)
.+...+|+|+ -+.+... ..|..+|.+.|++|.........+.. +......+|+||.= |.|| .+
T Consensus 2 ~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l----GGDG-T~ 76 (292)
T PRK03378 2 NNHFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVV----GGDG-NM 76 (292)
T ss_pred CccCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEE----CCcH-HH
Confidence 3344567777 3334444 44555666778888765443322210 01111246777753 6787 35
Q ss_pred HHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 97 LKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 97 L~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|+..+... ...+|||-+-. |=.+||. .+..+++...+++++..
T Consensus 77 L~aa~~~~-~~~~Pilgin~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 77 LGAARVLA-RYDIKVIGINR-------------GNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred HHHHHHhc-CCCCeEEEEEC-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 56555432 13678875543 5567776 67788888888887654
No 238
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=49.66 E-value=55 Score=34.99 Aligned_cols=63 Identities=21% Similarity=0.371 Sum_probs=48.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKC--SY---QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML 97 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~--gy---eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL 97 (558)
-.|+++|-|..+.+.=...|... || +|. ...||...++.+.+. .+||||+|+.-|.+.+..+.
T Consensus 146 e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 146 ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALF 214 (337)
T ss_pred cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHH
Confidence 45899998888887767776543 55 343 566999999988655 89999999999988876653
No 239
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=49.66 E-value=1.9e+02 Score=28.07 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=44.0
Q ss_pred HHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHHhhcCCCCc-eEEEEecCCC
Q 008655 51 LLVKCSYQVT-SV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKELQRI-PVIMMSAQDE 119 (558)
Q Consensus 51 lL~~~gyeV~-~A--sdg~EALe~L~~~~~~PDLIILDi~MP~mDG-------lElL~~Ir~~~~~~~i-PVIVLSa~~d 119 (558)
.+...+..+. .+ .+..+.++.+.. .+|.|+++-..|+.+| ++.+++++.......+ ++|++.+--+
T Consensus 104 ~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~ 180 (220)
T PRK05581 104 LIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGIN 180 (220)
T ss_pred HHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC
Confidence 3344455543 22 233444444432 3677766654455433 3445555432111112 4555655555
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008655 120 VSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~K 137 (558)
.+.+.++++.|++.++.-
T Consensus 181 ~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 181 ADNIKECAEAGADVFVAG 198 (220)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 578888888999987554
No 240
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=49.54 E-value=2.3e+02 Score=31.48 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=62.5
Q ss_pred CcEEEEEeC---CHH-HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 008655 32 KVRILLCDN---DSN-SSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM------------TK 92 (558)
Q Consensus 32 ~irVLIVDD---d~~-~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~------------mD 92 (558)
.+.++.||- +.. ..+.++.+-... ...|+ .+.+.++|..++.. ..|.|.+-+. |+ ..
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGVP 311 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCcc
Confidence 467888887 333 333333333332 23333 57788888888865 4788754431 11 12
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
.++++..+........+|||.=.+-.....+.+||.+||+....=
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 344554444322225688887778888999999999999988753
No 241
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.51 E-value=2.5e+02 Score=29.13 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
.++++.+|++. ..+|||...+-.+.+.+.+++.+||+.+
T Consensus 222 ~l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 222 ALRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred cHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 36778888764 4789999999999999999999998655
No 242
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=49.33 E-value=52 Score=34.78 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhhcCCCCceEE--EEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVI--VLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~ 154 (558)
-++++|+++.+. ..+||| ...+-.+.+.+..++++||+.++. |.-++.+....+...+..
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478889999874 468998 666677899999999999999854 444666666555555543
No 243
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.98 E-value=1.5e+02 Score=33.63 Aligned_cols=94 Identities=7% Similarity=0.106 Sum_probs=49.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...|++||.|+...+.+ ++.|+.++..+ +-.+.++.+.-. +.|.+++-..=.. +-..++..+++.. +.++
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~-~~~~iv~~~~~~~--~~~~ 510 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGY-EAGEIVASAREKR--PDIE 510 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChH-HHHHHHHHHHHHC--CCCe
Confidence 35667777666543333 23456555333 234455544333 5776665443211 1223444555543 6677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
||.-.. +.+......++||+..+.
T Consensus 511 iiar~~--~~~~~~~l~~~Gad~vv~ 534 (558)
T PRK10669 511 IIARAH--YDDEVAYITERGANQVVM 534 (558)
T ss_pred EEEEEC--CHHHHHHHHHcCCCEEEC
Confidence 776654 344555566889887773
No 244
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=48.60 E-value=2.8e+02 Score=29.08 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=57.3
Q ss_pred CcEEEEE-eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLC-DNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIV-DDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.++++|+ .++...+..|..+....+-.|....-..+..+++. ..|++++. ++ |+.+++.+. ..+|
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~----~aD~~v~~---~g--g~t~~EA~a-----~g~P 295 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR----VTSCMITK---PG--GITLSEAAA-----LGVP 295 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH----hccEEEeC---CC--chHHHHHHH-----hCCC
Confidence 4666555 55555666676666554423443333333344443 35887753 22 666666654 5679
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQD--EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+..... ..+.+....+.|+. ..+.+.++|...+..++..
T Consensus 296 vI~~~~~~g~~~~n~~~~~~~G~~---~~~~~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 296 VILYKPVPGQEKENAMYFERKGAA---VVIRDDEEVFAKTEALLQD 338 (380)
T ss_pred EEECCCCCCcchHHHHHHHhCCcE---EEECCHHHHHHHHHHHHCC
Confidence 87654222 12222233455653 2245778888888887653
No 245
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.29 E-value=1.3e+02 Score=31.23 Aligned_cols=99 Identities=17% Similarity=0.320 Sum_probs=56.0
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHHHHH--------HHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 008655 33 VRILLCD--NDSN---SSDAVFSLLVKCSYQVTSVRSPRQVID--------ALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (558)
Q Consensus 33 irVLIVD--Dd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe--------~L~~~~~~PDLIILDi~MP~mDGlElL~~ 99 (558)
+||.||- ..+. ....+..+|...|++|....+..+.+. .+.. ..+|+||.= |.||. +|+.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~i----GGDGT-lL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIAI----GGDGT-ILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEEE----eCcHH-HHHH
Confidence 3566662 2222 344566667777888776533221111 1111 146777753 66773 5555
Q ss_pred HHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 100 Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++ .. ...+||+.+.. |=.+||. .+..+++...+..+++.
T Consensus 74 ~~-~~-~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 74 EH-KT-KKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred HH-hc-CCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 55 22 25789987765 3345665 56778888877777654
No 246
>PRK05637 anthranilate synthase component II; Provisional
Probab=48.11 E-value=75 Score=31.60 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=35.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIIL 84 (558)
-+|||||-...+...|...|+..|+.+....+... ++.+... .||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEE
Confidence 47999999888888999999999987765554222 2333333 6888887
No 247
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=47.66 E-value=2.8e+02 Score=28.93 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=55.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~-gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
++++++-+++..+..+.+.+... +..+..... +..+++. ..|++++. .|...+ +++. ..+|+
T Consensus 221 ~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~----~aDl~v~~------sG~~~l-Ea~a----~G~Pv 283 (380)
T PRK00025 221 LRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG--QKREAMA----AADAALAA------SGTVTL-ELAL----LKVPM 283 (380)
T ss_pred eEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc--cHHHHHH----hCCEEEEC------ccHHHH-HHHH----hCCCE
Confidence 34555544444444455555444 443333221 2233332 24777763 366666 4454 57899
Q ss_pred EEEecCCCHH-HH------------HHHHHcC--CCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVS-VV------------VKCLRLG--AADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 112 IVLSa~~d~e-~a------------~eAL~~G--A~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|++-...... .+ .+.+..+ +..++.+..+.++|...+..++...
T Consensus 284 I~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~ 342 (380)
T PRK00025 284 VVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADG 342 (380)
T ss_pred EEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCH
Confidence 8774322111 11 1222211 3557778889999999888887643
No 248
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=47.51 E-value=2.2e+02 Score=29.93 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCcEEEEE--eCCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEeCCCCCCCHHHHHH
Q 008655 31 SKVRILLC--DNDSNSS---DAVFSLLVKCSYQVTSVRSPRQVIDA-------LNAEGSDIDLILAEVDLPMTKGLKMLK 98 (558)
Q Consensus 31 ~~irVLIV--DDd~~~r---~~L~~lL~~~gyeV~~Asdg~EALe~-------L~~~~~~PDLIILDi~MP~mDGlElL~ 98 (558)
+.-+|+|+ .+.+... ..+...|++.|+++....+....+.. .......+|+||+= |.|| .+|+
T Consensus 4 ~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDG-t~l~ 78 (291)
T PRK02155 4 QFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVL----GGDG-TMLG 78 (291)
T ss_pred cCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEE----CCcH-HHHH
Confidence 33457776 3344444 44555566778887654432221110 01111247888763 6677 3556
Q ss_pred HHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.++... ...+||+=+. .|=.+||. .+..+++...|..+++.
T Consensus 79 ~~~~~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 79 IGRQLA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred HHHHhc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 665432 2578887554 45667888 78888888888887654
No 249
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=47.49 E-value=3.4e+02 Score=30.98 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.0
Q ss_pred cccCCCC----------CCCCCcceeeecCCcccccc
Q 008655 172 LVASDPS----------DANTNSTTLFSDDTDDKSRR 198 (558)
Q Consensus 172 lvgssp~----------~a~s~~tvLi~ges~~~~~~ 198 (558)
+++.++. .+.++.++|+.||+++.+..
T Consensus 214 iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~ 250 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKEL 250 (526)
T ss_pred eeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHH
Confidence 6777764 35678899999999997654
No 250
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=47.33 E-value=55 Score=32.54 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHH
Q 008655 49 FSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127 (558)
Q Consensus 49 ~~lL~~~gy-eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL 127 (558)
.+.|++.+. -|+...+.+++++.++.. ..-.+=++.+.|-.-+.+++++.|++.. +++ +|=.-+--+.+.+.+|+
T Consensus 2 ~~~l~~~~iiaVir~~~~~~a~~~~~al-~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~ 77 (196)
T PF01081_consen 2 EERLKENKIIAVIRGDDPEDAVPIAEAL-IEGGIRAIEITLRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAI 77 (196)
T ss_dssp HHHHHHHSEEEEETTSSGGGHHHHHHHH-HHTT--EEEEETTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHH
T ss_pred hHHHhhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEecCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHH
Confidence 345555553 344555666666655431 0123445666666778899999998754 442 33334566788999999
Q ss_pred HcCCCEEEeCCCCHHHHHH
Q 008655 128 RLGAADYLVKPLRTNELLN 146 (558)
Q Consensus 128 ~~GA~DYL~KP~~~eeL~~ 146 (558)
++||.-.++ |.-..++.+
T Consensus 78 ~aGA~FivS-P~~~~~v~~ 95 (196)
T PF01081_consen 78 AAGAQFIVS-PGFDPEVIE 95 (196)
T ss_dssp HHT-SEEEE-SS--HHHHH
T ss_pred HcCCCEEEC-CCCCHHHHH
Confidence 999987777 544444433
No 251
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=47.03 E-value=85 Score=33.03 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=48.1
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.+.+.+.++|.+.+.. .+|+|++| .|+..+--++++.++.. ..-.+|-.|+--+.+.+.+....|++-+.
T Consensus 193 eVEv~tleqa~ea~~a---gaDiI~LD-n~~~e~l~~av~~~~~~---~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 193 VVEADTPKEAIAALRA---QPDVLQLD-KFSPQQATEIAQIAPSL---APHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHhhcc---CCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3477899999999975 59999999 44333333444444322 12346777888888888888899976654
No 252
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=46.86 E-value=1.3e+02 Score=30.80 Aligned_cols=75 Identities=13% Similarity=0.302 Sum_probs=46.6
Q ss_pred cEE-EEEeCCHHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 33 VRI-LLCDNDSNSSDAVFSLLVKCSYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 33 irV-LIVDDd~~~r~~L~~lL~~~gyeV~~Asd-------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
..| +++.++... +.+.|+..||.|....+ ..+.++.+... .||+||+|.- ..+. +..+.++.
T Consensus 32 ~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~vV~D~y--~~~~-~~~~~~k~-- 101 (279)
T TIGR03590 32 AEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEEE--KFDILIVDHY--GLDA-DWEKLIKE-- 101 (279)
T ss_pred CEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc--CCCEEEEcCC--CCCH-HHHHHHHH--
Confidence 354 444444332 34677788998875543 45677777765 7999999984 3333 35566664
Q ss_pred CCCCceEEEEecCCC
Q 008655 105 ELQRIPVIMMSAQDE 119 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d 119 (558)
...+++++.....
T Consensus 102 --~~~~l~~iDD~~~ 114 (279)
T TIGR03590 102 --FGRKILVIDDLAD 114 (279)
T ss_pred --hCCeEEEEecCCC
Confidence 2447777776543
No 253
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=46.81 E-value=73 Score=35.40 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.+.+..+++. ..|+|.+|..-.. ...++++++|++. ++++|||+ ..-.+.+.+..++++||+.+.
T Consensus 226 ~~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4556655543 5899999995543 4567788888875 36778776 455667888899999998873
No 254
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=46.78 E-value=98 Score=29.67 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=36.2
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHHhhc--CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 79 IDLILAEVDLPMTKG-------LKMLKYITRDK--ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 79 PDLIILDi~MP~mDG-------lElL~~Ir~~~--~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
+|.|+++-..|+.+| ++.++++++.. ..+++||++.-+-. .+.+.++++.||+.++.=
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 687777655555433 44555554431 01247876665544 477889999999988753
No 255
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.77 E-value=2e+02 Score=30.33 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLL----VKCS--YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL----~~~g--yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.|||=|.+-.+.-.+...+ ...+ ..|. .+.+.+|+.+.+.. .+|+|.+| .|.-.+=-++++.|+.. .
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LD-n~~~e~l~~av~~~~~~--~ 241 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLD-NMPVDLMQQAVQLIRQQ--N 241 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHHHhc--C
Confidence 4666666544432233333 2334 3344 78899999999864 59999999 23221222233334332 2
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+++| |..++--+.+.+.+....|++-+-
T Consensus 242 ~~i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 242 PRVK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred CCeE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 4454 555666678888888999987764
No 256
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=46.68 E-value=73 Score=30.64 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=47.4
Q ss_pred HHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHHhhcC--CCCceEEEEe
Q 008655 48 VFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPMTK-------GLKMLKYITRDKE--LQRIPVIMMS 115 (558)
Q Consensus 48 L~~lL~~~gyeV~~---Asdg~EALe~L~~~~~~PDLIILDi~MP~mD-------GlElL~~Ir~~~~--~~~iPVIVLS 115 (558)
..+.+...+..+.. ..+..+.++.+.. .+|.|+++-.-|+.. +++.++++++... ..++||++..
T Consensus 96 ~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G 172 (210)
T TIGR01163 96 LLQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG 172 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 33445555644332 3345566655543 367777654434433 3345555543210 1235765555
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008655 116 AQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~K 137 (558)
+- +.+.+.++++.||+.++.-
T Consensus 173 GI-~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 173 GV-NDDNARELAEAGADILVAG 193 (210)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEC
Confidence 54 4678888899999988654
No 257
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.50 E-value=1.8e+02 Score=29.10 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=55.3
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHH
Q 008655 50 SLLVKCS-YQVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127 (558)
Q Consensus 50 ~lL~~~g-yeV~~Asdg~EALe~L~~~-~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL 127 (558)
+.|...+ .-|+...+.+++++.++.. ..... ++.+.|-.-+.++.+++|++.. +++ +|=.-+--+.+.+.+++
T Consensus 3 ~~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~~--~~~-~vGAGTVl~~~~a~~a~ 77 (204)
T TIGR01182 3 ELLREAKIVPVIRIDDVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKEV--PDA-LIGAGTVLNPEQLRQAV 77 (204)
T ss_pred hHHhhCCEEEEEecCCHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHHC--CCC-EEEEEeCCCHHHHHHHH
Confidence 3444555 3455667788877776542 11344 3444445556889999998753 432 22223456788899999
Q ss_pred HcCCCEEEeCCCCHHHHHH
Q 008655 128 RLGAADYLVKPLRTNELLN 146 (558)
Q Consensus 128 ~~GA~DYL~KP~~~eeL~~ 146 (558)
++||.-.++ |....++.+
T Consensus 78 ~aGA~Fivs-P~~~~~v~~ 95 (204)
T TIGR01182 78 DAGAQFIVS-PGLTPELAK 95 (204)
T ss_pred HcCCCEEEC-CCCCHHHHH
Confidence 999986666 544444443
No 258
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=45.72 E-value=2.6e+02 Score=29.11 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=51.3
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-E
Q 008655 62 VRSPRQVIDALNAEGSDIDLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-L 135 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PDLIILDi~M-----P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L 135 (558)
+.+.++|..+... ..|.|++.-+- .+...++++.++++.- ...+|||.-.+-.+...+.+++.+||+.. +
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4567776665543 47887775421 1234677888886642 12589988888999999999999999988 4
Q ss_pred eCCC
Q 008655 136 VKPL 139 (558)
Q Consensus 136 ~KP~ 139 (558)
-.|+
T Consensus 256 g~~~ 259 (299)
T cd02809 256 GRPF 259 (299)
T ss_pred cHHH
Confidence 4454
No 259
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.60 E-value=3.9e+02 Score=28.18 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHH--H--HHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 34 RILLCDNDSNSS--D--AVFSLL----VKCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 34 rVLIVDDd~~~r--~--~L~~lL----~~~gy--eV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
.|||=|.+-.+. - .+...+ ...++ .| +.+.+.+++.+.+.. .+|+|++| .|+--++-+.+..
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLD----n~s~e~l~~av~~ 233 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLD----NFSLDDLREGVEL 233 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEEC----CCCHHHHHHHHHH
Confidence 578888776542 1 233433 33443 34 488999999999865 58999999 3443333333332
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
. ....+|-.|+.-+.+.+.+....|++-.
T Consensus 234 ~---~~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 234 V---DGRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred h---CCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 2 1224778888888888888888987654
No 260
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=45.37 E-value=1.5e+02 Score=30.19 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-----
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL----- 139 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~----- 139 (558)
++|..+.... .+.+++ .+|- ..|+++++.|.+ ..+++- +|.--+...+..|.++|| +|+. ||
T Consensus 71 ~eA~~l~~~~--~~nv~V---KIP~T~~Gl~Ai~~L~~----~Gi~vn-~T~ifs~~Qa~~Aa~aGa-~yvs-PyvgRi~ 138 (222)
T PRK12656 71 KDAHEIRRQC--GDDVYI---KVPVTPAGLAAIKTLKA----EGYHIT-ATAIYTVFQGLLAIEAGA-DYLA-PYYNRME 138 (222)
T ss_pred HHHHHHHHHh--CCCEEE---EeCCCHHHHHHHHHHHH----CCCceE-EeeeCCHHHHHHHHHCCC-CEEe-cccchhh
Q ss_pred ----CHHHHHHHHHHHHHH
Q 008655 140 ----RTNELLNLWTHMWRR 154 (558)
Q Consensus 140 ----~~eeL~~~L~~llr~ 154 (558)
+...+...+..++++
T Consensus 139 d~g~D~~~~i~~i~~~~~~ 157 (222)
T PRK12656 139 NLNIDSNAVIGQLAEAIDR 157 (222)
T ss_pred hcCCCHHHHHHHHHHHHHh
No 261
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.31 E-value=1.2e+02 Score=31.87 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=57.4
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------------HHhcCCCceEEEEeCCCCCCCHHH
Q 008655 34 RILLC--DNDSNSS---DAVFSLLVKCSYQVTSVRSPRQVIDA-------------LNAEGSDIDLILAEVDLPMTKGLK 95 (558)
Q Consensus 34 rVLIV--DDd~~~r---~~L~~lL~~~gyeV~~Asdg~EALe~-------------L~~~~~~PDLIILDi~MP~mDGlE 95 (558)
+|.|+ -+.+... ..|...|.+.|++|.........+.. .......+|+||+= |.|| .
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~l----GGDG-T 76 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISI----GGDG-T 76 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEE----CCcH-H
Confidence 46665 2333333 44555666778888765433222210 01111146777762 6677 4
Q ss_pred HHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|+..+... ...+||+-+-. |-.+||. .+..+++...+..+++.
T Consensus 77 ~L~aa~~~~-~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 77 FLRTATYVG-NSNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred HHHHHHHhc-CCCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 556555432 24789885543 5567776 57788888888887764
No 262
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=45.30 E-value=2e+02 Score=29.44 Aligned_cols=79 Identities=6% Similarity=0.078 Sum_probs=52.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRS-------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~~Asd-------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
...+|.++...+.+.+.+.+.|... +.++.-+.+ .++.++.+.+. .||+|++-+.+|...- ++.+++.
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~ 179 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHAS--GAKIVTVAMGSPKQEI--FMRDCRL 179 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEECCCcHHHH--HHHHHHH
Confidence 3589999999999998888888654 555542221 23346666655 7999999999998544 4555554
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
. ...+|++-.+
T Consensus 180 ~---~~~~v~~gvG 190 (243)
T PRK03692 180 V---YPDALYMGVG 190 (243)
T ss_pred h---CCCCEEEEeC
Confidence 3 3456654433
No 263
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=45.19 E-value=1.6e+02 Score=31.16 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEe
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-----SVRSPRQVIDALNAEGSDIDLILAE 85 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-----~Asdg~EALe~L~~~~~~PDLIILD 85 (558)
.+-+||=+|-|+..++.-..+-++.|..+. ...-++...++|... +|||+++=
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViT 161 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--RPDILVIT 161 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--CCCEEEEe
Confidence 367999999999998888888788876543 222455566677766 89998863
No 264
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.14 E-value=2.3e+02 Score=30.05 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hC-C-CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLV---KC-S-YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~---~~-g-yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.|||=|.+-.+.-.+...+. .. . ..| +.+.+.+++.+.+.. .+|+|++|= |+--++-+.+... .
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDn----mspe~l~~av~~~---~ 247 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDN----FTLDMMREAVRVT---A 247 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHhh---c
Confidence 57777777655433333332 11 1 234 478899999999975 599999993 3333333333322 1
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
.-.+|-.|+--+.+.+.+....|++-.
T Consensus 248 ~~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 248 GRAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 224677788888888888888888655
No 265
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=44.77 E-value=1.3e+02 Score=30.63 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 67 QVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 67 EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+..+.+.+. ..|.|.+|...++. -.++++++|++.- ..+|||-.-+-.+.+.+.+.++.||+...
T Consensus 152 ~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 152 IDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEF--NDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhc--CCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 444444444 68999999777764 2488889988742 35899888888889999999999999874
No 266
>PRK14974 cell division protein FtsY; Provisional
Probab=44.67 E-value=2.9e+02 Score=29.69 Aligned_cols=100 Identities=14% Similarity=0.232 Sum_probs=52.8
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHH--
Q 008655 32 KVRILLCDNDS---NSSDAVFSLLVKCSYQVTSVR---SP----RQVIDALNAEGSDIDLILAEVDLPMTK--GLKML-- 97 (558)
Q Consensus 32 ~irVLIVDDd~---~~r~~L~~lL~~~gyeV~~As---dg----~EALe~L~~~~~~PDLIILDi~MP~mD--GlElL-- 97 (558)
..+|++++-|. .....|.......|..+.... ++ .++++.+... ..|+||+|-. +.. -.+++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa--Gr~~~~~~lm~e 243 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA--GRMHTDANLMDE 243 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CccCCcHHHHHH
Confidence 46898888773 334455555556676655333 22 3455555444 6899999974 221 23333
Q ss_pred -HHHHhhcCCCCceEEEEecCCCHHHHH--HHH--HcCCCEEEe
Q 008655 98 -KYITRDKELQRIPVIMMSAQDEVSVVV--KCL--RLGAADYLV 136 (558)
Q Consensus 98 -~~Ir~~~~~~~iPVIVLSa~~d~e~a~--eAL--~~GA~DYL~ 136 (558)
+.|.+.. .++.-++|+++....+... +.+ ..|.+.+|.
T Consensus 244 L~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 244 LKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 3333221 2455566666644433332 222 357777644
No 267
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=44.60 E-value=74 Score=32.18 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=44.6
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 33 VRILLCDNDS------NSSDAVFSLLVKCSYQVTSV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 33 irVLIVDDd~------~~r~~L~~lL~~~gyeV~~A-sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
++||++-... .....+...|.+.|++|... .+.......+... +||||.+-......-.+.++..+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH----
Confidence 3677776654 35566777888889887633 3444444555444 899998855443433444444442
Q ss_pred CCCceEEEE
Q 008655 106 LQRIPVIMM 114 (558)
Q Consensus 106 ~~~iPVIVL 114 (558)
..+|+|+.
T Consensus 75 -~~~~~v~~ 82 (365)
T cd03825 75 -DRKPVVWT 82 (365)
T ss_pred -cCCCEEEE
Confidence 24676654
No 268
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=44.40 E-value=1.6e+02 Score=29.98 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=53.5
Q ss_pred HhCCCEEEEECCH--------HHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHH
Q 008655 53 VKCSYQVTSVRSP--------RQVID-ALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 53 ~~~gyeV~~Asdg--------~EALe-~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a 123 (558)
.+.+++|..+.+| +.+.. +++. +.||.||.----|...|-...++|.+. .++|.|+++.-.. -.+
T Consensus 28 dRedi~vrVvgsgaKM~Pe~veaav~~~~e~--~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg-~~v 101 (277)
T COG1927 28 DREDIEVRVVGSGAKMDPECVEAAVTEMLEE--FNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPG-LKV 101 (277)
T ss_pred ccCCceEEEeccccccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCcc-chh
Confidence 3456776655543 23333 3343 489999988777888888888888765 6889999987553 345
Q ss_pred HHHHHcCCCEEEeCC
Q 008655 124 VKCLRLGAADYLVKP 138 (558)
Q Consensus 124 ~eAL~~GA~DYL~KP 138 (558)
.+.|+.--.+||.-+
T Consensus 102 kdeleeqGlGYIivk 116 (277)
T COG1927 102 KDELEEQGLGYIIVK 116 (277)
T ss_pred HHHHHhcCCeEEEec
Confidence 566666667775444
No 269
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=44.39 E-value=1.6e+02 Score=26.77 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=47.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLV---KCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~---~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
-++||.||+..+..|+.-.. +.+-. |+-+. -.++++.|++. -|. +.|--.+|-++.+++.- .+
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~-t~~~l~~Lr~l--apg-----l~l~P~sgddLa~rL~l----~h 93 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVE-TAAALQRLRAL--APG-----LPLLPVSGDDLAERLGL----RH 93 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH--cCC-----CcccCCCHHHHHHHhCC----Cc
Confidence 68999999999999877543 33321 22333 35666666654 344 45556789999999954 45
Q ss_pred ceEEEEec
Q 008655 109 IPVIMMSA 116 (558)
Q Consensus 109 iPVIVLSa 116 (558)
-||++...
T Consensus 94 YPvLit~t 101 (105)
T TIGR03765 94 YPVLITAT 101 (105)
T ss_pred ccEEEecC
Confidence 68887543
No 270
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=44.11 E-value=94 Score=30.93 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=50.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~-~Asdg~EALe~L~~~~--~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
..+|.-||-++......++.+...|+ +|. ...++.+.+..+.... ..+|+||+|.. ..+-.+.++.+..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ 143 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD--KRNYLEYFEKALP 143 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST--GGGHHHHHHHHHH
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc--ccchhhHHHHHhh
Confidence 36999999999999999999998885 354 5678888888876532 26999999985 3344555555543
No 271
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.81 E-value=3.7e+02 Score=29.33 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDL-------PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~M-------P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+..+.+.+. ..|+|+++... +..+...+.+.+++ .++|||. ..-.+.+.+.+++++||+.++.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455666666655 69999996532 22255666666654 3688876 4556678889999999999855
No 272
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=43.65 E-value=2.6e+02 Score=28.81 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 91 TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 91 mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
.-|+.+++.+. ..+|||....... ..+.+..|..+||..|.+.++|...|..++...
T Consensus 290 g~~~~~lEAma-----~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 290 GFGLSLMEALS-----HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred ccChHHHHHHh-----CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 34666666664 5678886542211 224566788999999999999999998887643
No 273
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=43.34 E-value=2.8e+02 Score=28.14 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCceEEEE-----eCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcC-CCEEEe-
Q 008655 64 SPRQVIDALNAEGSDIDLILA-----EVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLG-AADYLV- 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIIL-----Di~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~G-A~DYL~- 136 (558)
+..+..+.+.+. ..|.|++ |-.+++.+ +++++++.+. .++|||..-+-.+.+.+.++++.| |+..+.
T Consensus 156 ~~~~~~~~l~~~--G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 156 DAVEWAKEVEKL--GAGEILLTSMDKDGTKSGYD-LELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred CHHHHHHHHHHc--CCCEEEEeCcCcccCCCCCC-HHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEh
Q ss_pred -----CCCCHHHHHHHHHH
Q 008655 137 -----KPLRTNELLNLWTH 150 (558)
Q Consensus 137 -----KP~~~eeL~~~L~~ 150 (558)
+-++..++...++.
T Consensus 230 ~a~~~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 230 SVFHYREITIGEVKEYLAE 248 (254)
T ss_pred HHHhCCCCCHHHHHHHHHH
No 274
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=43.33 E-value=1.2e+02 Score=28.47 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEeCCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR----SPRQVIDALNAEGSDIDLILAEVDLPM 90 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As----dg~EALe~L~~~~~~PDLIILDi~MP~ 90 (558)
+...-+|+|+..+....+-|..+|.+.|..|..+. +.++++. .-|||++-..-+.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~-------~ADIVvsAtg~~~ 83 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH-------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh-------hCCEEEEecCCCC
Confidence 34557999999999999999999999999998877 4444432 4699999987774
No 275
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.30 E-value=80 Score=29.50 Aligned_cols=38 Identities=5% Similarity=0.064 Sum_probs=24.1
Q ss_pred CceEEEEeCCCCCCC-----HH--------HHHHHHHhhcCCCCceEEEEecC
Q 008655 78 DIDLILAEVDLPMTK-----GL--------KMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 78 ~PDLIILDi~MP~mD-----Gl--------ElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
+||+|++-+..-+.. +. .+++.|++.. +...||+++..
T Consensus 67 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~iil~t~~ 117 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQALP--SKPKIYICYPI 117 (188)
T ss_pred CCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHHC--CCCeEEEEeCC
Confidence 799999988665532 11 3566666543 56677777753
No 276
>PRK13566 anthranilate synthase; Provisional
Probab=43.22 E-value=78 Score=37.53 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=49.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCC-CCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPM-TKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi--~MP~-mDGlElL~~Ir~~~~~~~ 108 (558)
..+|||||-...+...|.+.|++.|++|........ .+.+... .||.||+-= .-|. .+-.++++++.. ..
T Consensus 526 g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~~----~~ 598 (720)
T PRK13566 526 GKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAALA----RN 598 (720)
T ss_pred CCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHHH----CC
Confidence 368999999988899999999999998876554321 2233223 689887631 1121 123455555543 46
Q ss_pred ceEEEEe
Q 008655 109 IPVIMMS 115 (558)
Q Consensus 109 iPVIVLS 115 (558)
+||+=+-
T Consensus 599 iPILGIC 605 (720)
T PRK13566 599 LPIFGVC 605 (720)
T ss_pred CcEEEEe
Confidence 7887543
No 277
>PLN02591 tryptophan synthase
Probab=43.14 E-value=3.6e+02 Score=27.83 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=64.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EE-C-CHHHHHHHHHhcCCCceEEEE-e-CCCCC------CCHHHHHHHHHh
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SV-R-SPRQVIDALNAEGSDIDLILA-E-VDLPM------TKGLKMLKYITR 102 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A-s-dg~EALe~L~~~~~~PDLIIL-D-i~MP~------mDGlElL~~Ir~ 102 (558)
-|||.|-...-...+...+.+.|...+ .+ . +..+-+..+.+. ....|-+ - ....+ .+-.++++++++
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~--~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA--SEGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh--CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 467777776767777788888887644 33 3 334445555444 3444432 1 11111 122455777776
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
. ..+||++=.+-.+.+.+.++++.||+..+.-.
T Consensus 187 ~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 V---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred c---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 3 68899986777888999999999999999865
No 278
>PRK00811 spermidine synthase; Provisional
Probab=43.06 E-value=1.9e+02 Score=30.00 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHHH
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKC------SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-----GLKMLKYI 100 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~------gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD-----GlElL~~I 100 (558)
.+|.+||=|+.+.+..++.|... .-+|. ...|+.+.+.. ...++|+||+|..-|..- .-++++.+
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~ 177 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPVGPAEGLFTKEFYENC 177 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCCCchhhhhHHHHHHHH
Confidence 58999999999999998887532 22343 56677766544 223799999998655322 24555555
Q ss_pred Hh
Q 008655 101 TR 102 (558)
Q Consensus 101 r~ 102 (558)
++
T Consensus 178 ~~ 179 (283)
T PRK00811 178 KR 179 (283)
T ss_pred HH
Confidence 54
No 279
>PLN02316 synthase/transferase
Probab=42.88 E-value=2.7e+02 Score=34.58 Aligned_cols=113 Identities=9% Similarity=0.032 Sum_probs=62.0
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhCCC----EEEEECCHHHHH--HHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 32 KVRILLCDND--SNSSDAVFSLLVKCSY----QVTSVRSPRQVI--DALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd--~~~r~~L~~lL~~~gy----eV~~Asdg~EAL--e~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
.++++||.+- +.....|..+....+. .|.......+.+ .++. ..|++++-- +-.--|+..|+.++
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya----aADiflmPS-~~EP~GLvqLEAMa-- 941 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA----GADFILVPS-IFEPCGLTQLTAMR-- 941 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH----hCcEEEeCC-cccCccHHHHHHHH--
Confidence 4667777753 3334445555543321 333222222222 2332 357777653 33456888887776
Q ss_pred cCCCCceEEEEecCCCHHHHHHH---------HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDEVSVVVKC---------LRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d~e~a~eA---------L~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|+|+-..-.-.+.+... ...|..+|+..|.+...|..+|.+++..
T Consensus 942 ---~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 942 ---YGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred ---cCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 45566653222223333221 1125789999999999999888887653
No 280
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=42.72 E-value=3.9e+02 Score=27.60 Aligned_cols=108 Identities=15% Similarity=0.256 Sum_probs=63.3
Q ss_pred cEEEEEeC---CHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 33 VRILLCDN---DSNSSDAVFSLLVKCSY---QVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 33 irVLIVDD---d~~~r~~L~~lL~~~gy---eV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
.+++|+-+ .......+...+...+. .|... -+..+..+.+. ..|++++-.. .+.-|+.+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~aDv~v~ps~-~e~~g~~~lEA~a-- 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS----NAEVFVCPSI-YEPLGIVNLEAMA-- 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH----hCCEEEeCCc-cCCCChHHHHHHH--
Confidence 45555533 23334455555544332 13322 24566666664 3587776332 2334666776665
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCH------HHHHHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRT------NELLNLWTHMWRR 154 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~------eeL~~~L~~llr~ 154 (558)
..+|||+. .... ..+.+..|..+++.++-+. ++|...|..++..
T Consensus 303 ---~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 303 ---CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred ---cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC
Confidence 56788753 3332 3456677888999998887 8888888887653
No 281
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.59 E-value=3.3e+02 Score=27.60 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=60.1
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc--CCCCceEEEEecCCCHHHHH
Q 008655 48 VFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK--ELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 48 L~~lL~~~g-yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~--~~~~iPVIVLSa~~d~e~a~ 124 (558)
+.+.|.+.+ .-|+...+.++|++.++.. ..--+=++.+.|-.-+.++.++.|++.. .++++ +|=.-+--+.+.+.
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~a~~~~~al-~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~ 85 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEVAKKVIKAC-YDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAA 85 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHH
Confidence 445566666 4566778888888887652 1223446677776677888888886421 11211 22223456788899
Q ss_pred HHHHcCCCEEEeCCCCHHHHHH
Q 008655 125 KCLRLGAADYLVKPLRTNELLN 146 (558)
Q Consensus 125 eAL~~GA~DYL~KP~~~eeL~~ 146 (558)
.|+++||.-.++ |.-..++.+
T Consensus 86 ~a~~aGA~FiVs-P~~~~~v~~ 106 (222)
T PRK07114 86 LYIQLGANFIVT-PLFNPDIAK 106 (222)
T ss_pred HHHHcCCCEEEC-CCCCHHHHH
Confidence 999999986666 544444444
No 282
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=42.44 E-value=1.8e+02 Score=27.72 Aligned_cols=85 Identities=11% Similarity=0.150 Sum_probs=48.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHH---HHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHh
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITR 102 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EA---Le~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~ 102 (558)
|+|+..+|||...+..+...|...|.+.|++|. ...+.... ...+......+.++.+|+. +...+ .+++.+..
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~ 78 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVS--DEAAVRALIEAAVE 78 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCC--CHHHHHHHHHHHHH
Confidence 455557899999999999999999888899877 44454332 2223322223445556654 32222 34444443
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
. ...+-+|+..+
T Consensus 79 ~--~~~id~vi~~a 90 (246)
T PRK05653 79 A--FGALDILVNNA 90 (246)
T ss_pred H--hCCCCEEEECC
Confidence 2 13445555443
No 283
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=42.30 E-value=1.6e+02 Score=29.51 Aligned_cols=69 Identities=26% Similarity=0.266 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCC-C--HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~MP~m-D--GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+..+..+.+... ..-+|++|+.--++ . .+++++++.+. ..+|||+=-+-.+.+.+.++.+.||+..+.
T Consensus 141 ~~~~~~~~~~~~~--g~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 141 ESLEEVRDFLNSF--DYGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred ccHHHHHHHHHhc--CCEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3566666666554 24799999976543 3 37889999875 578988877888888898999999998875
No 284
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.13 E-value=3.1e+02 Score=28.73 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=59.4
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLLV----KCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~g--yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.|||=|.+-.+.-.+...+. ..+ ..| +++.+.+++.+.+.. .+|.|.+|- =|.+.++++.+...
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~- 230 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVP- 230 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcC-
Confidence 57777776555433444332 234 334 388999999998753 599999973 35577777765321
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.++| |+.++--+.+.+.+.++.||+.+-
T Consensus 231 ~~i~-i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 231 SAIV-TEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CCce-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 2333 334455677888899999998774
No 285
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=42.08 E-value=2.7e+02 Score=28.36 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=74.3
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHH
Q 008655 32 KVRILLCDNDS----NSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYI 100 (558)
Q Consensus 32 ~irVLIVDDd~----~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~~I 100 (558)
.+.+-|.|... .....+...|+..|+.+. -+.+|-..+..|... +||+|=+|-.+- ......+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l--~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRL--PPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhC--CCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 44455554332 133445566777887754 788999999999876 899999987443 23344566666
Q ss_pred HhhcCCCCceEEEEecCCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHH
Q 008655 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA----DYLVKPLRTNELLNLW 148 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~----DYL~KP~~~eeL~~~L 148 (558)
-.......+.|| .-+-++.+....+.++|++ .|+.||...+++...+
T Consensus 199 v~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~ 249 (256)
T COG2200 199 VALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALL 249 (256)
T ss_pred HHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHH
Confidence 554322344443 3455667777788899986 3488999886665543
No 286
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.01 E-value=3.3e+02 Score=27.42 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCC---CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc-CCCEEEe
Q 008655 65 PRQVIDALNAEGSDID-LILAEVDL---PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-GAADYLV 136 (558)
Q Consensus 65 g~EALe~L~~~~~~PD-LIILDi~M---P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~-GA~DYL~ 136 (558)
..+.++.+... .++ +++.++.- -..--+++++++.+. ..+|||.--+-.+.+.+.++++. ||+..+.
T Consensus 155 ~~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 155 AVEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred HHHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 34555655544 454 66766542 112236788888864 46899988888999999999975 9988876
No 287
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.91 E-value=3.9e+02 Score=28.36 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLLV----KCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~----~~gy--eV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.|||=|.+-.+.-.+...+. ..++ .| +.+.+.+++.+.+.. .+|+|++|= |+--++-+.+...
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDn----mspe~l~~av~~~--- 238 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDN----MSLEQIEQAITLI--- 238 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHh---
Confidence 57888877665544444443 3342 34 378999999999975 589999993 3433333333221
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
..-.+|-.|+--+.+.+.+....|++-.
T Consensus 239 ~~~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 239 AGRSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred cCceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 1224677788888888888888888655
No 288
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=41.56 E-value=3.4e+02 Score=29.41 Aligned_cols=107 Identities=11% Similarity=0.179 Sum_probs=65.4
Q ss_pred CcEEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDS-----NSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~-----~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
.++++||.+.. .....|.++....+. .|.... +-++..+++. ..|+.+.-.. ...=|+.+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~----~adv~v~~s~-~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELS----TASIGLHTMW-NEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHH----hCeEEEECCc-cCCcccHHHHHHH-
Confidence 47888887642 345566666666554 354433 3566666665 3577765322 2334777877765
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLR---LGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~---~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
..+|||....-.... +.+. .|..+||.. +.+++...+..++.
T Consensus 347 ----~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 ----AGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred ----cCCcEEEEcCCCCch---heeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 456777544322222 2333 578888863 88999999888876
No 289
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=41.50 E-value=2.3e+02 Score=28.57 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=58.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++|+.+.+. ...+.+.+...+. .|.......+..+++. ..|++++-... +.-|+.+++.+. ..+
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~v~~s~~-e~~~~~~~Ea~a-----~G~ 287 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYN----AADLFVLSSAW-EGFGLVVAEAMA-----CEL 287 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHH----hhceEEecccc-cCCChHHHHHHH-----cCC
Confidence 467777776553 3445555554442 3444433344444443 24776654332 223666776665 456
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||+ +...... +.+.. .+++..+.+.+++...+..++.
T Consensus 288 PvI~-~~~~~~~---e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 288 PVVA-TDAGGVR---EVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred CEEE-ecCCChh---hEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 7774 3322211 22222 5677788899999999988863
No 290
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=41.20 E-value=1.1e+02 Score=34.34 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.+..+-+..|... ..|+|++|...... .-++++++|+.. ++++|||+ -.-.+.+.+..++++||+.+-
T Consensus 224 ~~~~~ra~~Lv~a--GVd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDA--GVDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHHh--CCCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 3445555555444 58999999987543 356788889875 36788776 335678889999999997654
No 291
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=41.13 E-value=1.1e+02 Score=34.22 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.++.+.+.+. ..|+|++|..... ..-++++++|+... +++|||+ -.-.+.+.+..++++||+.+.
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~--p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKY--PDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhC--CCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4555555444 6899999975333 45677888888753 5778776 556678889999999998774
No 292
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=41.06 E-value=3.9e+02 Score=26.83 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=66.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCC-CCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVD-LPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~-MP~mDGlElL~~Ir~~~~~ 106 (558)
.++++|+.+.+. ...+.+.+...+. .|.... +..+..+.+. ..|++++-.. ..+.-|+.+++.+.
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~----~ad~~i~ps~~~~e~~g~~~~Ea~~----- 287 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLA----ACDVFVFPSVERSEAFGIVLLEAMA----- 287 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH----hCCEEEeCCcccccccchHHHHHHH-----
Confidence 477888876653 3455565544432 344322 4455555654 3577775322 12344677777775
Q ss_pred CCceEEEEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLR-LGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~-~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
..+|||+.-.....+ .+. .|...++..+.+.+++...+..++...
T Consensus 288 ~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 288 FGKPVISTEIGTGGS----YVNLHGVTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred cCCCEEecCCCCchh----HHhhCCCceEEeCCCCHHHHHHHHHHHHHCH
Confidence 467888533222222 233 488899999999999999999887643
No 293
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=40.81 E-value=2.1e+02 Score=31.42 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=62.9
Q ss_pred eCCHHHHHHHHHHHHhCCCE----EEEE-----------------------CCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 008655 39 DNDSNSSDAVFSLLVKCSYQ----VTSV-----------------------RSPRQVIDALNAEGSDIDLILAEVDLPMT 91 (558)
Q Consensus 39 DDd~~~r~~L~~lL~~~gye----V~~A-----------------------sdg~EALe~L~~~~~~PDLIILDi~MP~m 91 (558)
+++....+.+.+.++..||+ |..+ -+.+++++.+...-.+++++.+.=-++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56667777788888766542 2222 24488888776532247788877666655
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecC---CCHHHHHHHHHcCCCEE-EeCCCCHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQ---DEVSVVVKCLRLGAADY-LVKPLRTNEL 144 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~---~d~e~a~eAL~~GA~DY-L~KP~~~eeL 144 (558)
| ++-+++|++.- ...+|| +... .+.....++++.|+.++ +.||...--|
T Consensus 290 D-~eg~~~L~~~~-g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGi 342 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTL 342 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCH
Confidence 4 66667776531 013443 4433 35788889999887665 6788754333
No 294
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=40.36 E-value=1.7e+02 Score=29.16 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=51.3
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 62 VRSPRQVIDALNAEGSDID-LILAEVDLPM---TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PD-LIILDi~MP~---mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..+..+..+.+... ..| |+++|+.--+ ..-++++++|++. ..+||++--+-.+.+.+.+++..||+..+.
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 34777888887765 455 7777886322 2236778888774 468999888889999999999999877654
No 295
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=40.30 E-value=2.8e+02 Score=26.62 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=36.1
Q ss_pred CHHHHHHHHHhhcCCCCceEEE-EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIM-MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIV-LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~ 147 (558)
-|++++++|++. ...|+.+ +..++..+.+..+.++||+..+......++....
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~ 96 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRL 96 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHH
Confidence 588899999863 3456533 4455556778888899999988766544444333
No 296
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=40.21 E-value=5.1e+02 Score=28.32 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=55.6
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 33 VRILLCDND-SNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 33 irVLIVDDd-~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++++|+.+- +.....+..+....+..+. ..-+.+++..++. ..|++++--. -+.-|+.+++.+. ..+
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~----~aDv~l~pS~-~E~~gl~~lEAma-----~G~ 390 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA----GADFILMPSR-FEPCGLTQLYAMR-----YGT 390 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH----hCCEEEeCCC-cCCcHHHHHHHHH-----CCC
Confidence 566666554 2334444444444332232 2223333333433 2466665322 1334566665554 455
Q ss_pred eEEEEecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLG------AADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~G------A~DYL~KP~~~eeL~~~L~~llr 153 (558)
|+|+ +..... .+.+..| ..+|+..|.+.++|...|.+++.
T Consensus 391 pvI~-s~~gg~---~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 391 VPIV-RRTGGL---ADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CeEE-ccCCCc---cceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 6654 322221 1223333 77899999999999999888765
No 297
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=40.11 E-value=3e+02 Score=28.54 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=58.6
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLL----VKCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL----~~~g--yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.|||.|++..+.-.+...+ +..+ ..+ +++.+.+|+++.+.. .+|.|.+|-.-| +-++++.+.- .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~-~ 220 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLL-K 220 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHh-c
Confidence 6888888755443222222 2233 334 488999999999764 589999986433 4445444321 1
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..+||+ .++--+.+.+.+..+.||+.+-.
T Consensus 221 ~~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 221 GRVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 236654 45556678888999999987743
No 298
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=40.09 E-value=1.1e+02 Score=32.74 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 78 DIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 78 ~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..|+|++|..--. ..-++.+++|++. .+.|+|+.-.-...+.+..++++||+.+..
T Consensus 108 ~~d~i~~D~ahg~s~~~~~~i~~i~~~---~p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 108 TPEYITIDIAHGHSNSVINMIKHIKTH---LPDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred CCCEEEEeCccCchHHHHHHHHHHHHh---CCCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 3799999986543 3456788888874 345666666567889999999999998864
No 299
>PRK06138 short chain dehydrogenase; Provisional
Probab=40.04 E-value=3e+02 Score=26.62 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=48.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~ 107 (558)
.+.-+|||..-...+-..|...|.+.|++|+ .+.+...+.+..........+.++.+++-+.+.+ ++++.+.+.. .
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~--~ 80 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARW--G 80 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc--C
Confidence 3445899999999999999999888899877 4555544333332210012233333344444444 4566665532 3
Q ss_pred CceEEEEe
Q 008655 108 RIPVIMMS 115 (558)
Q Consensus 108 ~iPVIVLS 115 (558)
.+-+|+..
T Consensus 81 ~id~vi~~ 88 (252)
T PRK06138 81 RLDVLVNN 88 (252)
T ss_pred CCCEEEEC
Confidence 45555544
No 300
>PRK00654 glgA glycogen synthase; Provisional
Probab=39.55 E-value=5.3e+02 Score=28.32 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=60.4
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDND-SNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd-~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.++++|+.+- +.....|..+..+.+-.|. ..-+.+.+-.++. ..|++++--. -+.-|+.+++.+. ..
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS~-~E~~gl~~lEAma-----~G 380 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPSR-FEPCGLTQLYALR-----YG 380 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCCC-CCCchHHHHHHHH-----CC
Confidence 4667777653 3344556665555543332 2223332333333 3577776422 3445677776654 45
Q ss_pred ceEEEEecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLG------AADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~G------A~DYL~KP~~~eeL~~~L~~llr 153 (558)
+|+|+ +...... +.+..| ..+|+..|.+.++|...+.+++.
T Consensus 381 ~p~V~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 381 TLPIV-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCEEE-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 56665 3322211 223334 77999999999999998888764
No 301
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.53 E-value=4.1e+02 Score=29.82 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=35.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEeC
Q 008655 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG--SDIDLILAEV 86 (558)
Q Consensus 32 ~irVLIVDDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~--~~PDLIILDi 86 (558)
..+|++++-|+. ....|.......|+.+..+.+..+..+.+.... ...|+||+|-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 468888888764 233444444455777777777766655554321 1489999996
No 302
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.37 E-value=2.6e+02 Score=24.29 Aligned_cols=82 Identities=9% Similarity=0.060 Sum_probs=48.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEE-EEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLI-LAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLI-ILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
++=...+......+...|...|..+....+.......+.... .-|++ ++...--..+-+++++.+++ ..+++|+
T Consensus 18 i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~~g~~~~~~~~~~~a~~----~g~~iv~ 92 (139)
T cd05013 18 IFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT-PGDVVIAISFSGETKETVEAAEIAKE----RGAKVIA 92 (139)
T ss_pred EEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHH----cCCeEEE
Confidence 333344555666677777777887777777666555443321 22433 33433222345667777665 4689999
Q ss_pred EecCCCHH
Q 008655 114 MSAQDEVS 121 (558)
Q Consensus 114 LSa~~d~e 121 (558)
+|+..+..
T Consensus 93 iT~~~~~~ 100 (139)
T cd05013 93 ITDSANSP 100 (139)
T ss_pred EcCCCCCh
Confidence 99976643
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.29 E-value=2.6e+02 Score=30.63 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=48.2
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCCCH--HHHHHHHHhhcCC
Q 008655 33 VRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD-LPMTKG--LKMLKYITRDKEL 106 (558)
Q Consensus 33 irVLIVDDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~-MP~mDG--lElL~~Ir~~~~~ 106 (558)
.+|.+|..|.. ..+.|..+.+..|..+..+.++.+....+... ...|+||+|.- +...|. .+.+..|.... .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-T 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccC-C
Confidence 47777776664 23445555555676666666665555555443 26799998873 333333 23444443211 1
Q ss_pred CCceEEEEecCCCHHH
Q 008655 107 QRIPVIMMSAQDEVSV 122 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~ 122 (558)
+.-.++||++....+.
T Consensus 246 ~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 246 PVQRLLLLNATSHGDT 261 (374)
T ss_pred CCeEEEEecCccChHH
Confidence 2234778887655443
No 304
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=39.23 E-value=4.3e+02 Score=26.86 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=64.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCC-C----CCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDL-P----MTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~M-P----~mDGlElL~~Ir~ 102 (558)
.++++||.+.+. ...+..++...|. .|.... +.++..+.+.. .|++++-... + ..-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 467777776543 3445555555432 343322 34555555543 4766653221 1 112667777765
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||.-.... ..+.+..|...++..|.+.++|.+.+.+++..
T Consensus 293 ----~G~PvI~s~~~~----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 293 ----SGVPVVATRHGG----IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred ----cCCCEEEeCCCC----chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 567888533322 23455667788999999999999999888764
No 305
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=39.16 E-value=2.9e+02 Score=31.61 Aligned_cols=108 Identities=11% Similarity=0.163 Sum_probs=62.4
Q ss_pred cCCCCCcEEEEE--eCCHHHHHH---HHHHHH-hCCCEEEEECCHHHHHH----------------HHHhcCCCceEEEE
Q 008655 27 FIDRSKVRILLC--DNDSNSSDA---VFSLLV-KCSYQVTSVRSPRQVID----------------ALNAEGSDIDLILA 84 (558)
Q Consensus 27 ~m~m~~irVLIV--DDd~~~r~~---L~~lL~-~~gyeV~~Asdg~EALe----------------~L~~~~~~PDLIIL 84 (558)
.+...+-+|+|| -+.+..... |...|. ..|++|....+....+. .+......+|+||+
T Consensus 189 ~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs 268 (508)
T PLN02935 189 KWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT 268 (508)
T ss_pred eecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE
Confidence 345556788888 344555544 444455 46788776443222210 00001114677765
Q ss_pred eCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 85 EVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 85 Di~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
= |.|| .+|+..+... ...+||+-+ ..|=.+||+ ++..+++...|..+++.
T Consensus 269 i----GGDG-TlL~Aar~~~-~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 269 L----GGDG-TVLWAASMFK-GPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKG 318 (508)
T ss_pred E----CCcH-HHHHHHHHhc-cCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcC
Confidence 2 6677 3555555422 246788744 467888985 78899999888888764
No 306
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.10 E-value=1e+02 Score=32.17 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELL 145 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa~------~d~e~a~eAL~~GA~DYL~KP~~~eeL~ 145 (558)
+-+++++++++.. ..+|+++|+=+ .-.....+|-+.|++.+|.--+..++-.
T Consensus 80 ~~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 80 DTLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 4567777887643 78999999943 3345677899999999999877665543
No 307
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=38.99 E-value=1.9e+02 Score=27.94 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.++..||.+.... +.. ++++.+... .+|.||+...-+. ..++++++.+ .++|+|++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~~----~~ipvV~~~~ 87 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLDA----ERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHhh----CCCCEEEEec
Confidence 445566667789877543 233 444555444 7999988643332 2346666654 5689888754
No 308
>PRK05670 anthranilate synthase component II; Provisional
Probab=38.98 E-value=42 Score=32.38 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=33.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIIL 84 (558)
|||||-...+-..+.++|.+.|+++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999998876554322112222333 5887776
No 309
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.92 E-value=4.5e+02 Score=26.99 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=56.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCC------CHHHHHHHHHhhcC
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDIDLILAEVDLPMT------KGLKMLKYITRDKE 105 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~-~As--dg~EALe~L~~~~~~PDLIILDi~MP~m------DGlElL~~Ir~~~~ 105 (558)
|+|.|-.......+...+++.|...+ .+. +..+-+..+.+....+..++.=....+. +-.+.++++++.
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~-- 196 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAY-- 196 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhh--
Confidence 44444444444556666677786633 222 3344444444332124444331111221 235667777763
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
..+||++=-+-.+.+.+.++.+.||+.++.-.
T Consensus 197 -~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 197 -SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 45687654455668899999999999998764
No 310
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=38.87 E-value=2.7e+02 Score=28.01 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=48.1
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCC------CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 62 VRSPRQVIDALNAEGSDIDLILAEVDLP------MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PDLIILDi~MP------~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+.+..++.+..+ . .+|.|.+.--.+ .--|+++++++.+. ..+||+.|-+- +.+.+.++++.||+.+-
T Consensus 118 ~~s~~~a~~A~~-~--gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~---~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 118 LRDRHGAMEIGE-L--RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM---IEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCCHHHHHHhhh-c--CCCEEEECCCCCCCCCCCCCCChHHHHHHHHh---CCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 346777766543 2 589888765431 12478899888764 57999999875 56778899999999883
No 311
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.81 E-value=1.2e+02 Score=32.86 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=40.5
Q ss_pred CceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 78 DIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 78 ~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
.+|+|++|+.--.. .-++++++|++. +++++ |+.-.-.+.+.+...+.+||+..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~--~P~~~-vIaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREA--WPDKT-ICAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHh--CCCCc-EEEecccCHHHHHHHHHcCCCEE
Confidence 68999999976543 347888999875 36665 44555677888889999999965
No 312
>PRK01362 putative translaldolase; Provisional
Probab=38.64 E-value=1.7e+02 Score=29.42 Aligned_cols=85 Identities=20% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHHhhcCCCC-ceEEEEecCCCHHHH
Q 008655 50 SLLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQR-IPVIMMSAQDEVSVV 123 (558)
Q Consensus 50 ~lL~~~gyeV--~~Asdg~EALe~L~~~~~~PDLIILDi---~MP~mDGlElL~~Ir~~~~~~~-iPVIVLSa~~d~e~a 123 (558)
+.|...|+.| +.+-+..+|+...... ++.|-.=+ .-.+.||+++++.+.+...... -.-|+..+..+...+
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v 171 (214)
T PRK01362 95 KALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHV 171 (214)
T ss_pred HHHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHH
Confidence 3455556543 3455677777666542 44333211 1236789999888876432222 345566677888999
Q ss_pred HHHHHcCCCEEEeCC
Q 008655 124 VKCLRLGAADYLVKP 138 (558)
Q Consensus 124 ~eAL~~GA~DYL~KP 138 (558)
.+++.+|++-+ +=|
T Consensus 172 ~~~~~~G~d~i-Ti~ 185 (214)
T PRK01362 172 LEAALAGADIA-TIP 185 (214)
T ss_pred HHHHHcCCCEE-ecC
Confidence 99999999954 444
No 313
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=38.40 E-value=1.9e+02 Score=28.11 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 45 SDAVFSLLVKCSYQVTSVRS---PR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asd---g~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
...+.+.+++.||.+....+ .. +.++.+... .+|.||+-- ......+++.+.+ ..+|+|++-
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~---~~~~~~~~~~l~~----~~iPvv~~~ 85 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLER--GVDGLALIG---LDHSPALLDLLAR----RGVPYVATW 85 (268)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhc--CCCEEEEeC---CCCCHHHHHHHHh----CCCCEEEEc
Confidence 34466667778998775443 33 344455444 688777632 1112355666654 468988874
No 314
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.37 E-value=1.8e+02 Score=29.65 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHH-HcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL-RLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL-~~GA~DYL~ 136 (558)
+..+.++.+.+.+ --.+++.|+.--++ --+++++++.+. ..+|||.-.+-.+.+.+.+++ ..|++..+.
T Consensus 153 ~~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 3566777776542 23477788753321 236778888864 678999888889999999998 799987743
No 315
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=38.37 E-value=3.7e+02 Score=27.72 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=44.5
Q ss_pred HHHHHHHHHHh--CCCEEEE-------E-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 44 SSDAVFSLLVK--CSYQVTS-------V-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 44 ~r~~L~~lL~~--~gyeV~~-------A-sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
..+.+...|++ .|.+|.. . .|....+..+.+. .||+|++...-+ +...+++.+++.. .+.+++.
T Consensus 159 ~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~--~~d~v~~~~~~~--~~~~~~~~~~~~g--~~~~~~~ 232 (342)
T cd06329 159 VAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKAS--GADTVITGNWGN--DLLLLVKQAADAG--LKLPFYT 232 (342)
T ss_pred HHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHc--CCCEEEEcccCc--hHHHHHHHHHHcC--CCceEEe
Confidence 44666777777 7777641 1 4555666777665 799999976433 6788999998764 3566655
Q ss_pred Eec
Q 008655 114 MSA 116 (558)
Q Consensus 114 LSa 116 (558)
.+.
T Consensus 233 ~~~ 235 (342)
T cd06329 233 PYL 235 (342)
T ss_pred ccc
Confidence 443
No 316
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=38.35 E-value=4.5e+02 Score=26.80 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=40.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC---CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ---DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTHMWR 153 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~---~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~llr 153 (558)
.|++++. .+ +..+++.+. ..+|+|++... .......+.+..+-.+++..+-+ .++|.+.+..++.
T Consensus 251 ad~~v~~---~g--~~~l~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 251 ADLVISR---AG--ASTVAELAA-----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CCEEEEC---CC--hhHHHHHHH-----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 4776652 11 445556654 56899886421 12122234455566778776654 8999999988875
Q ss_pred H
Q 008655 154 R 154 (558)
Q Consensus 154 ~ 154 (558)
.
T Consensus 321 ~ 321 (348)
T TIGR01133 321 D 321 (348)
T ss_pred C
Confidence 4
No 317
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=38.25 E-value=2.4e+02 Score=32.95 Aligned_cols=109 Identities=7% Similarity=0.023 Sum_probs=70.2
Q ss_pred CcEEEEEeCCHHHHHH-----HHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCC--CCCHHHHHHHHH
Q 008655 32 KVRILLCDNDSNSSDA-----VFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLP--MTKGLKMLKYIT 101 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~-----L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP--~mDGlElL~~Ir 101 (558)
..+|+++-=-+..... ...+|..-||++. .+.+.+++.+.+.+. .++|+++...=. .-.+-++++.|+
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~s--ga~i~viCssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKA--GAQVAVLCSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhc--CCCEEEEeCCCcchHHHHHHHHHHHH
Confidence 4577776544443322 3334455578876 346778888888765 577777765333 235678889998
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L 148 (558)
+.. ...|+|.+.... ..+...+|+++||.--.+.-+++..+
T Consensus 572 ~ag----~~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~ 612 (619)
T TIGR00642 572 AAG----AKALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSST 612 (619)
T ss_pred hCC----CCEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHH
Confidence 753 237777876643 33477899999999888765554443
No 318
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=38.19 E-value=5.1e+02 Score=28.36 Aligned_cols=65 Identities=20% Similarity=0.384 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDL-------PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~M-------P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+..+..+.+.+. ..|+|+++-.. ...+-.++.+.++. .++|||+ ..-.+.+.+.++++.||+.++
T Consensus 143 ~~~e~a~~l~eA--Gad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVVKA--GADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----LDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCCCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 455666666655 68999987321 22344444444443 4689886 566778889999999999987
No 319
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=37.99 E-value=1.7e+02 Score=31.08 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 67 QVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 67 EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.++.+.+. .+|+|.+|..... ..-++++++|++.. +.+||++ ..-.+.+.+..++++||+....
T Consensus 97 ~~~~~l~ea--gv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 97 ERAEALVEA--GVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 334444333 6899999985432 23478888888753 4466664 4456678889999999998764
No 320
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=37.95 E-value=5.1e+02 Score=31.23 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=79.8
Q ss_pred CCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhC----CCEEE-EECCHHHHHHH----------------HHhcCCCceE
Q 008655 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKC----SYQVT-SVRSPRQVIDA----------------LNAEGSDIDL 81 (558)
Q Consensus 23 ~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~----gyeV~-~Asdg~EALe~----------------L~~~~~~PDL 81 (558)
.+=|.++..+++|++..-++.....+...++.. |++|. .+.+|.|.++. +.. .-+|+
T Consensus 228 ~nlGvld~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~ 305 (781)
T PRK00941 228 LGMGTIDKSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDV 305 (781)
T ss_pred ccCcccCCCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcE
Confidence 456677788999999999999999999987633 66655 77777776533 222 26899
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec----------CCCHHHHHHHHHcCC--CEEEeCCCCHHHHHHHHH
Q 008655 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA----------QDEVSVVVKCLRLGA--ADYLVKPLRTNELLNLWT 149 (558)
Q Consensus 82 IILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa----------~~d~e~a~eAL~~GA--~DYL~KP~~~eeL~~~L~ 149 (558)
+++|.+--.-+=.++.+. .++++|-+|. .++.+.+++.|..|- --+|.-|.-.-|+.-.+.
T Consensus 306 ~VvD~QCi~p~L~eiA~~-------ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a 378 (781)
T PRK00941 306 IVVDEQCVRTDILEEAKK-------LGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVA 378 (781)
T ss_pred EEEecccCcccHHHHHHH-------hCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHH
Confidence 999996433333333322 4678887773 455666776666554 445666766666655444
Q ss_pred HHH
Q 008655 150 HMW 152 (558)
Q Consensus 150 ~ll 152 (558)
..+
T Consensus 379 ~~~ 381 (781)
T PRK00941 379 KAV 381 (781)
T ss_pred HHH
Confidence 443
No 321
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.91 E-value=3e+02 Score=26.38 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-C-CHHHH---HHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhh
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-R-SPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~A-s-dg~EA---Le~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~ 103 (558)
.++.+|||+.-...+...|...|.+.|++|+.. . +.... .+.+... ...+.+...++-+.+.+ .++..+...
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 344589999999899999998888889998755 3 33222 2222222 23344554444444444 344555443
Q ss_pred cCCCCceEEEEec
Q 008655 104 KELQRIPVIMMSA 116 (558)
Q Consensus 104 ~~~~~iPVIVLSa 116 (558)
. ..+-+|+..+
T Consensus 81 ~--~~id~vi~~a 91 (247)
T PRK05565 81 F--GKIDILVNNA 91 (247)
T ss_pred h--CCCCEEEECC
Confidence 2 3456666654
No 322
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=37.85 E-value=1.4e+02 Score=30.88 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCC
Q 008655 43 NSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVD 87 (558)
Q Consensus 43 ~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~ 87 (558)
.....+.+.|.+.||+|..+. ++.+.+..+... +||+||.-++
T Consensus 22 ~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lh 65 (296)
T PRK14569 22 KSGKAVLDSLISQGYDAVGVDASGKELVAKLLEL--KPDKCFVALH 65 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhcc--CCCEEEEeCC
Confidence 445567777778899877554 445666666544 7898887553
No 323
>PRK10060 RNase II stability modulator; Provisional
Probab=37.83 E-value=2.4e+02 Score=32.65 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=70.5
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL----P-MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M----P-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
..+...|+..|+.+. -+.++..-+..|... ++|.|=+|-.+ . ......+++.|-......++.|| ..+-+
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l--~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhC--CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 345566778898876 577888999999876 89999999532 2 23445566666443322455444 45667
Q ss_pred CHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHH
Q 008655 119 EVSVVVKCLRLGAAD----YLVKPLRTNELLNLWTH 150 (558)
Q Consensus 119 d~e~a~eAL~~GA~D----YL~KP~~~eeL~~~L~~ 150 (558)
+.+....+.++|++- |+.||...+++...++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 777788888999853 38899999888776543
No 324
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.52 E-value=3.1e+02 Score=28.13 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 43 NSSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 43 ~~r~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.....++..+++.|++|.. ..+....+..+.+. .||+|++... ..+...+++.+++.. ...+++
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~--~~d~vi~~~~--~~~~~~~~~~~~~~g--~~~~~~ 222 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNS--KPDLIVISAL--AADGGNLVRQLRELG--YNGLIV 222 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEECCc--chhHHHHHHHHHHcC--CCCcee
Confidence 3455677777777877652 23556677777665 7999997764 346677888887754 334554
No 325
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=37.48 E-value=1.7e+02 Score=29.12 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=46.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHHhhcCCCCce-EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQRIP-VIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi---~MP~mDGlElL~~Ir~~~~~~~iP-VIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+-+..+|+..+... .+.|--=+ .--+.||+++++.+.+.....+.+ -|+..+-.+...+.+++.+||+-+-.
T Consensus 108 ~V~s~~Qa~~Aa~AG---A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv 184 (211)
T cd00956 108 AIFSAAQALLAAKAG---ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITL 184 (211)
T ss_pred EecCHHHHHHHHHcC---CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEe
Confidence 455666666665542 34322211 113579999988887643223323 44555677888899999999988765
Q ss_pred CC
Q 008655 137 KP 138 (558)
Q Consensus 137 KP 138 (558)
-|
T Consensus 185 ~~ 186 (211)
T cd00956 185 PP 186 (211)
T ss_pred CH
Confidence 44
No 326
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.34 E-value=7.2e+02 Score=28.99 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++||.|-+. +..|..++...+. .|.......+..+++. ..||.++--. -+.-|+.+++.+. ..+
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~La----aADVfVlPS~-~EGfp~vlLEAMA-----~Gl 497 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQ----KMNVFILFSR-YEGLPNVLIEAQM-----VGV 497 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHH----hCCEEEEccc-ccCccHHHHHHHH-----hCC
Confidence 467788877653 4566666666654 3555444445545544 3587776332 2445677777765 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L 148 (558)
|||.... .. ..+.+..|..+|+..|.+...|...+
T Consensus 498 PVVATdv-GG---~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 498 PVISTPA-GG---SAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred CEEEeCC-CC---cHHHcccCCcEEEECCCChhhHHHHH
Confidence 9984433 22 23456689999999998766655443
No 327
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=37.18 E-value=2.8e+02 Score=24.13 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=16.3
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEEE
Q 008655 37 LCDNDSNSSDAVFSLLVKCSYQVTSV 62 (558)
Q Consensus 37 IVDDd~~~r~~L~~lL~~~gyeV~~A 62 (558)
+-|.+......+...|...||.+...
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT 32 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVAT 32 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEc
Confidence 33445545556666777789988643
No 328
>PLN02775 Probable dihydrodipicolinate reductase
Probab=37.18 E-value=5.3e+02 Score=27.31 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE------------------------CCHHHHHHHHHhcCCCceEEEEeC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV------------------------RSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~A------------------------sdg~EALe~L~~~~~~PDLIILDi 86 (558)
+.++|+|..-.-.+-..+.+.+...+++++-+ .+.+++|..+... .||+|++|.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~--~~~~VvIDF 87 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE--YPNLIVVDY 87 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc--CCCEEEEEC
Confidence 35788888888888777777665566664421 4455556454433 699999999
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc-CCCEEEeCCCCH
Q 008655 87 DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-GAADYLVKPLRT 141 (558)
Q Consensus 87 ~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~-GA~DYL~KP~~~ 141 (558)
..|.. -.+.++...+ ..+|+|+=|+--+.+...+..+. +.--++.-.|..
T Consensus 88 T~P~a-~~~~~~~~~~----~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 88 TLPDA-VNDNAELYCK----NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred CChHH-HHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 98873 2344454444 45677777654443433333333 444444444554
No 329
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=37.06 E-value=1.6e+02 Score=30.82 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=50.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCC--------CCCCCHHHHHHHHHhhcCCCCceEEEEec-CCCHHHHHHHHHcCCC
Q 008655 62 VRSPRQVIDALNAEGSDIDLILAEVD--------LPMTKGLKMLKYITRDKELQRIPVIMMSA-QDEVSVVVKCLRLGAA 132 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PDLIILDi~--------MP~mDGlElL~~Ir~~~~~~~iPVIVLSa-~~d~e~a~eAL~~GA~ 132 (558)
.++.++|.+.+++. .+|.+.+.+. -|.. +++.|++|++. ..+|++++-+ --+.+.+.++++.|+.
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~---~~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKEL---TNIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCcc-CHHHHHHHHHH---hCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 55899999998755 5888875521 1334 48999999875 4689988874 3446678899999998
Q ss_pred EEE
Q 008655 133 DYL 135 (558)
Q Consensus 133 DYL 135 (558)
.+=
T Consensus 226 kiN 228 (282)
T TIGR01859 226 KIN 228 (282)
T ss_pred EEE
Confidence 873
No 330
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=36.93 E-value=5.9e+02 Score=27.75 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=66.3
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----C------CCCH
Q 008655 32 KVRILLCDNDSN----SSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----P------MTKG 93 (558)
Q Consensus 32 ~irVLIVDDd~~----~r~~L~~lL~~~g-yeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M-----P------~mDG 93 (558)
.+.+++||-.-- +.+.++.+=...+ ..|+ -..+++.|.+++.. ..|.|.+.+.- . +..-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 367788875433 3333333333332 3433 24578888888865 47988877321 1 1134
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
++++..+........+|||.=.+-.....+.+||.+||+..+.=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 56666665544335789999999888899999999999999865
No 331
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.90 E-value=1.6e+02 Score=28.81 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIIL 84 (558)
++|+|||-.......+.+.|+..|+++....+..+ + . .+|.|++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~--~--~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I--L--DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H--c--cCCEEEE
Confidence 48999999988889999999999999887765422 2 1 5898887
No 332
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=36.77 E-value=93 Score=32.28 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=43.0
Q ss_pred HHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008655 72 LNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (558)
Q Consensus 72 L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~ 140 (558)
+.+. .||++|+=---|..-|-...+++... .++|.|++|.-.... ..++|+..-++||.-+.+
T Consensus 55 ~~~~--~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 55 LKEW--DPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHH----SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHhh--CCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 3455 89999987777778888888888765 689999999754433 467899899999776644
No 333
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.74 E-value=3.1e+02 Score=28.11 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 45 SDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
...+.+.+++.|.++.. ..+....+..+... .||+|++-. ..-....+++.+++.. ...|+++...-
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~--~pdaV~~~~--~~~~a~~~~~~~~~~G--~~~~~~~~~~~ 223 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAA--GADAIITVL--DAAVCASVLKAVRAAG--LTPKVVLSGTC 223 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhc--CCCEEEEec--ChHHHHHHHHHHHHcC--CCCCEEEecCC
Confidence 44566677777765431 13566777777655 799998754 2336788899998865 45676655543
Q ss_pred CCHH
Q 008655 118 DEVS 121 (558)
Q Consensus 118 ~d~e 121 (558)
.+.+
T Consensus 224 ~~~~ 227 (341)
T cd06341 224 YDPA 227 (341)
T ss_pred CCHH
Confidence 3333
No 334
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.69 E-value=95 Score=31.50 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCceEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 008655 107 QRIPVIMMSA------QDEVSVVVKCLRLGAADYLVKPLRTNELLN 146 (558)
Q Consensus 107 ~~iPVIVLSa------~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~ 146 (558)
-.+|||+++= +.....+-.|-.+||++||.-.+.++|-..
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 5689999983 556778888999999999998888876543
No 335
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.62 E-value=4.7e+02 Score=27.18 Aligned_cols=86 Identities=12% Similarity=0.208 Sum_probs=48.4
Q ss_pred HHHHHHhCCCEEEE----ECCHHH---HHHHHHhcCCCceEEEEeCCC---CCCC----HHHHHHHHHhhcCCCCceEEE
Q 008655 48 VFSLLVKCSYQVTS----VRSPRQ---VIDALNAEGSDIDLILAEVDL---PMTK----GLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 48 L~~lL~~~gyeV~~----Asdg~E---ALe~L~~~~~~PDLIILDi~M---P~mD----GlElL~~Ir~~~~~~~iPVIV 113 (558)
|.+.+...|.-|.. +.+.++ |.+.+... ..++++|+.... ++-. -+..+..+++. .++||++
T Consensus 126 LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~---~~~pV~~ 201 (266)
T PRK13398 126 LLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKEL---SHLPIIV 201 (266)
T ss_pred HHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhc---cCCCEEE
Confidence 33344445544432 224444 44455443 367999988743 3333 33445555543 4689887
Q ss_pred EecCCC------HHHHHHHHHcCCCEE-EeC
Q 008655 114 MSAQDE------VSVVVKCLRLGAADY-LVK 137 (558)
Q Consensus 114 LSa~~d------~e~a~eAL~~GA~DY-L~K 137 (558)
=+++.. ......|+.+||++. |.|
T Consensus 202 D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~ 232 (266)
T PRK13398 202 DPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred eCCCcccchhhHHHHHHHHHHcCCCEEEEec
Confidence 555432 456788999999854 554
No 336
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=36.60 E-value=1.1e+02 Score=30.31 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=44.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCCCHH--HHHHHHHhhcCCCC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV--DLPMTKGL--KMLKYITRDKELQR 108 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi--~MP~mDGl--ElL~~Ir~~~~~~~ 108 (558)
++|||+|........+.+.|.+.|+++.........+..+......+|.||+-= ..|.-++. .+++++.+ ..
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~----~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA----AG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh----CC
Confidence 489999998888888999999999876644432211111111001478777631 12322222 34444443 45
Q ss_pred ceEEEEe
Q 008655 109 IPVIMMS 115 (558)
Q Consensus 109 iPVIVLS 115 (558)
+||+=+-
T Consensus 77 ~PiLGIC 83 (214)
T PRK07765 77 TPLLGVC 83 (214)
T ss_pred CCEEEEc
Confidence 7877443
No 337
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=36.53 E-value=3.1e+02 Score=27.96 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=46.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE--EEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSY---QVT--SVR---SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gy---eV~--~As---dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
-+|.|+-++......+.+.++..+. .|. ... +....+..++.. .||+|++... ..+...+++++++..
T Consensus 130 ~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~--~~d~vv~~~~--~~~~~~~~~qa~~~g 205 (327)
T cd06382 130 KSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNS--GDNRIIIDCS--ADILIELLKQAQQVG 205 (327)
T ss_pred cEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhc--CceEEEEECC--HHHHHHHHHHHHHhC
Confidence 4555555555566667777776543 332 222 456667777655 7899988654 345777788777654
Q ss_pred CCCCceEEEEecC
Q 008655 105 ELQRIPVIMMSAQ 117 (558)
Q Consensus 105 ~~~~iPVIVLSa~ 117 (558)
......+.+++..
T Consensus 206 ~~~~~~~~i~~~~ 218 (327)
T cd06382 206 MMSEYYHYIITNL 218 (327)
T ss_pred ccccceEEEEecC
Confidence 3333333444544
No 338
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=36.51 E-value=1.6e+02 Score=33.47 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+-.+.|-+. ..|+|++|..-.. ..-++++++|++.. ++++|| ...-.+.+.+..++++||+....
T Consensus 248 ~~~~r~~~l~~a--g~d~i~iD~~~g~~~~~~~~i~~ik~~~--p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKA--GVDVVVLDSSQGDSIYQLEMIKYIKKTY--PELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHc--CCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 333444444443 6999999995211 22348899999753 455554 34456677899999999998754
No 339
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.47 E-value=2.1e+02 Score=32.51 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=61.0
Q ss_pred CcEEEEEeCCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHhcCCCceEEEEe--------------CCCC
Q 008655 32 KVRILLCDNDSNS----SDAVFSLLVKCS--YQVTS--VRSPRQVIDALNAEGSDIDLILAE--------------VDLP 89 (558)
Q Consensus 32 ~irVLIVDDd~~~----r~~L~~lL~~~g--yeV~~--Asdg~EALe~L~~~~~~PDLIILD--------------i~MP 89 (558)
.+.+++||-...- .+.++.+-...+ ..|.. +.+.+.|.+++.. ..|.|.+. +..|
T Consensus 254 Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~~ 330 (502)
T PRK07107 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGRG 330 (502)
T ss_pred CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCcc
Confidence 4677888744443 334444433333 34443 6678888888765 47887553 3333
Q ss_pred CCCHHHHHHHHH-hh--cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 90 MTKGLKMLKYIT-RD--KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 90 ~mDGlElL~~Ir-~~--~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..+.+.-+.... .. .....+|||.=.+-.....+.+||.+||+..+.
T Consensus 331 ~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 331 QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 333332222211 10 001248999988888889999999999998864
No 340
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=36.45 E-value=2.2e+02 Score=28.17 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=50.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye-V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG--lElL~~Ir~~~~~~ 107 (558)
..+|..||-++.....+..-+...+.. +. ...|..+.+.. ....+|+|++|-- -..| -++++.|.......
T Consensus 76 a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---~~~~fDlV~~DPP--y~~g~~~~~l~~l~~~~~l~ 150 (199)
T PRK10909 76 AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---PGTPHNVVFVDPP--FRKGLLEETINLLEDNGWLA 150 (199)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh---cCCCceEEEECCC--CCCChHHHHHHHHHHCCCcC
Confidence 468999999999999988888776642 33 44555554432 1225999999853 1233 35667776532223
Q ss_pred CceEEEEecCC
Q 008655 108 RIPVIMMSAQD 118 (558)
Q Consensus 108 ~iPVIVLSa~~ 118 (558)
.--||++....
T Consensus 151 ~~~iv~ve~~~ 161 (199)
T PRK10909 151 DEALIYVESEV 161 (199)
T ss_pred CCcEEEEEecC
Confidence 34566666433
No 341
>PRK10742 putative methyltransferase; Provisional
Probab=36.21 E-value=1.7e+02 Score=30.43 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=42.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC------SY----QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK 92 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~------gy----eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD 92 (558)
.-+|..||-++.+..+|.+-|... +. ++. ...+..+.|..+ ...||||++|-..|.-.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCCc
Confidence 356999999999999999999874 21 232 445666666553 22699999999888643
No 342
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.08 E-value=4.2e+02 Score=27.22 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 46 DAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
..+...+...|++|.. ..+....+..+... .||+|++... .-+...+++.+++.. ...+++.++..
T Consensus 162 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~~d~v~~~~~--~~~~~~~~~~~~~~g--~~~~~~~~~~~ 234 (344)
T cd06345 162 AGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAA--DPDVIIAGFS--GNVGVLFTQQWAEQK--VPIPTIGISVE 234 (344)
T ss_pred HHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhc--CCCEEEEeec--CchHHHHHHHHHHcC--CCCceEEecCC
Confidence 3445566666777542 23556666666655 6899988763 335777888887753 24566655443
No 343
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.08 E-value=2.8e+02 Score=30.14 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred CceEEEEeCCCCCCCHHH-HHHHHHhhcCCCCceEEEE-ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008655 78 DIDLILAEVDLPMTKGLK-MLKYITRDKELQRIPVIMM-SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlE-lL~~Ir~~~~~~~iPVIVL-Sa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
..+.+|++..-...=-+| ++..+ . ....|+.. ....+...+.+.|+.|+++.+.+|-+..++......+
T Consensus 88 ~~~~viv~~~dW~iIPlEnlIA~~-~----~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 88 EVDYVIVEGRDWTIIPLENLIADL-G----QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred cCCEEEEECCCCcEecHHHHHhhh-c----CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 346677666544433333 45555 2 33445544 3456688899999999999999999999987765544
No 344
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=36.00 E-value=3.1e+02 Score=29.92 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEE-eCCCCCCC----HHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 47 AVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILA-EVDLPMTK----GLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 47 ~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIIL-Di~MP~mD----GlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
.|..+-+..+..++ -+.+.++|...+.. ..|.|++ ...-...+ .+++|.+|.+. ..+|||+=.+-..
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~---G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~---~~~~vi~dGGIr~ 300 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIEL---GADGVILSNHGGRQLDDAIAPIEALAEIVAA---TYKPVLIDSGIRR 300 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHC---CcCEEEECCCCcCCCcCCccHHHHHHHHHHH---hCCeEEEeCCCCC
Confidence 34444444433332 45688999888764 4777654 33222333 48888888764 3589888888888
Q ss_pred HHHHHHHHHcCCCEE-EeCCC
Q 008655 120 VSVVVKCLRLGAADY-LVKPL 139 (558)
Q Consensus 120 ~e~a~eAL~~GA~DY-L~KP~ 139 (558)
...+++|+.+||+.+ +-.|+
T Consensus 301 g~Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 301 GSDIVKALALGANAVLLGRAT 321 (361)
T ss_pred HHHHHHHHHcCCCEEEECHHH
Confidence 999999999999988 44454
No 345
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=35.99 E-value=2.4e+02 Score=32.86 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=82.6
Q ss_pred CCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC----EEE----EECC---HHHH----------HHHHHhcCCCceE
Q 008655 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSY----QVT----SVRS---PRQV----------IDALNAEGSDIDL 81 (558)
Q Consensus 23 ~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~gy----eV~----~Asd---g~EA----------Le~L~~~~~~PDL 81 (558)
-|-+.+++++..||+|..+..-...+.+.|++.+. ++. +|-| -.++ +..++.. .+||
T Consensus 227 ~G~g~idksKP~il~iGHnv~~~~~i~dyleE~~l~d~vE~~GlccTA~D~tRy~~~aKvvGpls~ql~~IrsG--~aDV 304 (772)
T COG1152 227 IGMGTIDKSKPTILVIGHNVAPGTYIMDYLEENGLEDEVELAGLCCTAIDMTRYDEAAKVVGPLSKQLKVIRSG--KADV 304 (772)
T ss_pred ecCCccCCCCceEEEeccccccchHHHHHHHhccchhhhheeeeeeeccccchhhhhhhhhchhhhhhhhhhcC--CceE
Confidence 56678899999999999999988889999986652 221 1221 2222 3344443 7999
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe----------cCCCHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHHH
Q 008655 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS----------AQDEVSVVVKCLRLGAA-DYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 82 IILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS----------a~~d~e~a~eAL~~GA~-DYL~KP~~~eeL~~~L~~ 150 (558)
|++|-.....|-++-..+ ..+|+|... +..+.+.+++.|..|.. -||.-|...-++.-.+..
T Consensus 305 iVvDEqCir~Dileea~k-------~g~~vIat~~k~~~gLpD~Td~~~d~iV~~L~sg~~g~~lld~~K~gevav~vA~ 377 (772)
T COG1152 305 IVVDEQCIREDILEEASK-------LGIPVIATNEKGMLGLPDVTDEDVDEIVESLVSGEPGVVLLDPLKAGEVAVEVAE 377 (772)
T ss_pred EEecccccchhHHHHHhc-------cCCceEechhHHhcCCCccccCCHHHHHHHHhcCCCceeecchHHhhHHHHHHHH
Confidence 999999888776554433 456777654 23557789999999954 456667766666555444
Q ss_pred HHHH
Q 008655 151 MWRR 154 (558)
Q Consensus 151 llr~ 154 (558)
.+..
T Consensus 378 ~v~~ 381 (772)
T COG1152 378 AVEP 381 (772)
T ss_pred HHHH
Confidence 4433
No 346
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.93 E-value=3.6e+02 Score=27.87 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=31.8
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEeCC
Q 008655 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVR---SPR----QVIDALNAEGSDIDLILAEVD 87 (558)
Q Consensus 32 ~irVLIVDDd~~---~r~~L~~lL~~~gyeV~~As---dg~----EALe~L~~~~~~PDLIILDi~ 87 (558)
..+|+|||-|.. ..+.+..+....+..+.... +.. +++..+... .+|+||+|.-
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT~ 163 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDTA 163 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeCC
Confidence 468999997752 22445555566676555332 222 334343333 6899999973
No 347
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.93 E-value=2.2e+02 Score=26.01 Aligned_cols=82 Identities=9% Similarity=0.008 Sum_probs=47.8
Q ss_pred EEEEeCCHHHH--HHHHHHHHhCCCEEEEECCHHHHHHHHHh---cCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 35 ILLCDNDSNSS--DAVFSLLVKCSYQVTSVRSPRQVIDALNA---EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 35 VLIVDDd~~~r--~~L~~lL~~~gyeV~~Asdg~EALe~L~~---~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|+++.|+-... ..|.+.+-..-..-....+...+++.+.. ....||+|++-+.--+..-.+-+++|.+.. .+..
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~-~~~~ 80 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKDSGKLRKTVVIGLGTNGPFTKDQLDELLDAL-GPDR 80 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHc-CCCC
Confidence 67888887665 23333332221222244566777776642 223689999888766654455556665543 1347
Q ss_pred eEEEEecC
Q 008655 110 PVIMMSAQ 117 (558)
Q Consensus 110 PVIVLSa~ 117 (558)
+|++++..
T Consensus 81 ~ivlv~~~ 88 (150)
T cd01840 81 QVYLVNPH 88 (150)
T ss_pred EEEEEECC
Confidence 88887765
No 348
>PLN02335 anthranilate synthase
Probab=35.82 E-value=53 Score=32.90 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=44.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDL--PMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~M--P~mDGlElL~~Ir~~~~~~~i 109 (558)
.-+|||||-...+...|.+.|+..|+++.+.......++.+... .||.||+-=.- |.-.+ ..++.++... ..+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~~--~~~ 92 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLELG--PLV 92 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHhC--CCC
Confidence 45899999655567789999999998776554321112323333 57877764321 21112 2344444322 457
Q ss_pred eEEEE
Q 008655 110 PVIMM 114 (558)
Q Consensus 110 PVIVL 114 (558)
||+-+
T Consensus 93 PiLGI 97 (222)
T PLN02335 93 PLFGV 97 (222)
T ss_pred CEEEe
Confidence 87744
No 349
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.75 E-value=2.5e+02 Score=27.98 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc-CCCEEEe
Q 008655 66 RQVIDALNAEGSDID-LILAEVD----LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-GAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PD-LIILDi~----MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~-GA~DYL~ 136 (558)
.+....+... ..| |++.++. +++ -.+++++++.+. ..+|||..-+-.+.+.+.++++. ||+..+.
T Consensus 152 ~~~~~~l~~~--G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 152 VEWAKEVEEL--GAGEILLTSMDRDGTKKG-YDLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHHC--CCCEEEEeccCCCCCCCC-CCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3444445444 567 5555553 222 247888888764 57899988888889999999997 8987754
No 350
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.45 E-value=81 Score=29.28 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=42.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHH-----------HHHhcCCCceEEEEeCCCCCC---------
Q 008655 34 RILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVID-----------ALNAEGSDIDLILAEVDLPMT--------- 91 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe-----------~L~~~~~~PDLIILDi~MP~m--------- 91 (558)
||+++.|+-.....+...|... +..|. ..-+|..+.. .+... +||+|++-+..-+.
T Consensus 1 ~iv~~GDS~t~g~~~~~~l~~~l~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~--~pd~Vii~~G~ND~~~~~~~~~~ 78 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLLGVIYDNLGVNGASASLLLKWDAEFLQAQLAAL--PPDLVILSYGTNEAFNKQLNASE 78 (189)
T ss_pred CeeEecCccccccchhhHHHhhhceEEecCccCchhhhhhhccCHHHHHHHHhhC--CCCEEEEECCCcccccCCCCHHH
Confidence 4667777766543333333322 55554 2223322221 23333 89999998865542
Q ss_pred --CHH-HHHHHHHhhcCCCCceEEEEecC
Q 008655 92 --KGL-KMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 92 --DGl-ElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
.++ .++++|++.. +..+||+++..
T Consensus 79 ~~~~~~~li~~i~~~~--~~~~iv~~~~~ 105 (189)
T cd01825 79 YRQQLREFIKRLRQIL--PNASILLVGPP 105 (189)
T ss_pred HHHHHHHHHHHHHHHC--CCCeEEEEcCC
Confidence 111 3455565532 67888888864
No 351
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.36 E-value=5.4e+02 Score=27.13 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=45.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
+.+.+.+++.+.+.. .+|+|.+|= |+--++-+.+.... ... +|..|+--+.+.+.+....|++-+
T Consensus 199 VEv~tleea~ea~~~---gaDiI~LDn----~s~e~l~~av~~~~--~~~-~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 199 VEVDTLDQLEEALEL---GVDAVLLDN----MTPDTLREAVAIVA--GRA-ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEeCC----CCHHHHHHHHHHhC--CCc-eEEEECCCCHHHHHHHHhcCCCEE
Confidence 488999999999865 599999993 34333333333221 222 377888888888888889988655
No 352
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=35.11 E-value=3.2e+02 Score=26.65 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=47.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCCceE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRIPV 111 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~iPV 111 (558)
+|||..-...+...+.+.|.+.|++|. ...+...+-+..... ..++.++-.++.+.+.+ ++++.+.+.. ..+-+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~--~~id~ 77 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL--GDNLYIAQLDVRNRAAIEEMLASLPAEW--RNIDV 77 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--ccceEEEEecCCCHHHHHHHHHHHHHHc--CCCCE
Confidence 689999888899999999988899887 455554433332222 22344444444454443 3555655432 34555
Q ss_pred EEEec
Q 008655 112 IMMSA 116 (558)
Q Consensus 112 IVLSa 116 (558)
|+..+
T Consensus 78 vi~~a 82 (248)
T PRK10538 78 LVNNA 82 (248)
T ss_pred EEECC
Confidence 55543
No 353
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=35.08 E-value=3.7e+02 Score=27.73 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCC----CC---CCHHHHHHHHHhhcCCCCceEEEEecCC-C-----HHHHHHHHHcCC
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDL----PM---TKGLKMLKYITRDKELQRIPVIMMSAQD-E-----VSVVVKCLRLGA 131 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~M----P~---mDGlElL~~Ir~~~~~~~iPVIVLSa~~-d-----~e~a~eAL~~GA 131 (558)
-..|++.+...+ ..+|+|+.... |- .--+..+..+++. .++||++-+++. . ......|+.+||
T Consensus 148 ~~~Ave~i~~~G-n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~---~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 148 WLYAAEYILSSG-NGNVILCERGIRTFEKATRNTLDLSAVPVLKKE---THLPIIVDPSHAAGRRDLVIPLAKAAIAAGA 223 (260)
T ss_pred HHHHHHHHHHcC-CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh---hCCCEEEcCCCCCCccchHHHHHHHHHHcCC
Confidence 455666666542 57899998622 21 1234555666653 468998845542 2 456678999999
Q ss_pred CE-EEeCCCC
Q 008655 132 AD-YLVKPLR 140 (558)
Q Consensus 132 ~D-YL~KP~~ 140 (558)
+. +|.|=++
T Consensus 224 ~gl~iE~H~t 233 (260)
T TIGR01361 224 DGLMIEVHPD 233 (260)
T ss_pred CEEEEEeCCC
Confidence 87 6777544
No 354
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=35.05 E-value=4.2e+02 Score=25.51 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCEEEEE-CCH----HHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSV-RSP----RQVIDALNAEGSDIDLILAEVDLP----MTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~A-sdg----~EALe~L~~~~~~PDLIILDi~MP----~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+++.|..+... .+. +++..++. . .+|+|.+.-... +..+++.+++++... +. +.|++++
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~-~--g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~--~~-~~i~v~G 165 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE-L--GADYIGVHTGLDEQAKGQNPFEDLQTILKLV--KE-ARVAVAG 165 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH-c--CCCEEEEcCCcCcccCCCCCHHHHHHHHHhc--CC-CcEEEEC
Confidence 44555666778877643 333 44444433 2 589887752111 112455667666532 23 4555566
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 008655 117 QDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 117 ~~d~e~a~eAL~~GA~DYL~ 136 (558)
--+.+.+.++++.||+.++.
T Consensus 166 GI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 166 GINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcCHHHHHHHHHcCCCEEEE
Confidence 66778888999999998765
No 355
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=34.88 E-value=2e+02 Score=27.36 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=46.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHH---hCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 33 VRILLCDNDSNSSDAVFSLLV---KCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~---~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.-++||.||+..|..|+.-.. +.+-. |+-+. -.++++.|++. -|. +.|--.+|-++.++|.- .
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~l--apg-----l~l~P~sgddLA~rL~l----~ 130 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQL--APG-----LPLLPVSGDDLARRLGL----S 130 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH--cCC-----CeecCCCHHHHHHHhCC----C
Confidence 458999999999999987544 33321 33333 35566666654 344 44555689999999853 5
Q ss_pred CceEEEEe
Q 008655 108 RIPVIMMS 115 (558)
Q Consensus 108 ~iPVIVLS 115 (558)
+-||+|..
T Consensus 131 HYPvLIt~ 138 (142)
T PF11072_consen 131 HYPVLITA 138 (142)
T ss_pred cccEEeec
Confidence 56888654
No 356
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=34.88 E-value=3e+02 Score=28.55 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCHHH
Q 008655 46 DAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSV 122 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP~mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~ 122 (558)
..|...-...|.++. .+++.+|+...+.. .+++|=++- ++-.+. .++...+|...-+ ..+.+|.-|+-.+.+.
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVDLNRTEELAPLIP-KDVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBHTHHHHHHHCHSH-TTSEEEEESS-SSHHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccChHHHHHHHhhCc-cceeEEeecCCCCHHH
Confidence 445555567798865 89999998888754 477776644 333321 2344444543211 3456666678888999
Q ss_pred HHHHHHcCCCEEEeC
Q 008655 123 VVKCLRLGAADYLVK 137 (558)
Q Consensus 123 a~eAL~~GA~DYL~K 137 (558)
+....++|++.+|.-
T Consensus 224 ~~~l~~~G~davLVG 238 (254)
T PF00218_consen 224 ARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHCTTT-SEEEES
T ss_pred HHHHHHCCCCEEEEC
Confidence 999999999999874
No 357
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.76 E-value=4.5e+02 Score=27.34 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=32.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHH---HHHHhcCCCceEEEEeCC
Q 008655 33 VRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVI---DALNAEGSDIDLILAEVD 87 (558)
Q Consensus 33 irVLIVDDd~~---~r~~L~~lL~~~gyeV~~Asdg~EAL---e~L~~~~~~PDLIILDi~ 87 (558)
.+|.+|+-|.. ....+.......++.+..+.+..+.. +.+... ..+|+||+|-.
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 57777776653 33344455555678887767664443 334332 26899999973
No 358
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=34.63 E-value=2.5e+02 Score=27.19 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~Asd------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.++..||.+..+.. ..++++.+... .+|-||+.-..+. .+++..+.. ..+|||++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~---~~~~~~~~~----~~ipvv~~~~ 86 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSR--RPAGLILTGLEHT---ERTRQLLRA----AGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHc--CCCEEEEeCCCCC---HHHHHHHHh----cCCCEEEEec
Confidence 4455666778998775432 24556666554 7897777533222 345555554 4689998743
No 359
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=34.62 E-value=4e+02 Score=29.13 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=47.5
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHHhhcCCCCceEEEE-ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLK-MLKYITRDKELQRIPVIMM-SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 79 PDLIILDi~MP~mDGlE-lL~~Ir~~~~~~~iPVIVL-Sa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
.+.+|++..-+..=-+| ++..+.. ....|+.. ....+...+.++|+.|+++.+.+|-+..++......+
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~----~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~ 167 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQG----SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALL 167 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 56677666555544444 4555543 33455544 4456788899999999999999999999987765544
No 360
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.39 E-value=4.1e+02 Score=25.32 Aligned_cols=84 Identities=10% Similarity=0.093 Sum_probs=48.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHH----HHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHh
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQ----VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITR 102 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~E----ALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~ 102 (558)
.+...+|||..-...+...+.+.|.+.|++|+ ...+... ..+.+... ...+.++..++-..+.+ ++++.+..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999998888899985 4443332 22223322 23455554444444443 34555554
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
.. ..+-+|+..+
T Consensus 80 ~~--~~id~vi~~a 91 (248)
T PRK05557 80 EF--GGVDILVNNA 91 (248)
T ss_pred Hc--CCCCEEEECC
Confidence 32 3455555554
No 361
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=34.33 E-value=2.9e+02 Score=31.01 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=46.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP~m-------DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~ 132 (558)
.+.+..++...... .+|.|.+.--.|.. -|++.++++... ..+||+.+-+- +.+.+.+++..|++
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEA---SKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc---CCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 66788777666543 58998864433321 278888888653 57899988665 47778899999998
No 362
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=34.30 E-value=99 Score=28.54 Aligned_cols=80 Identities=9% Similarity=0.078 Sum_probs=42.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC---CHHHHHHHHHh--cCCCceEEEEeCCCCCCC-H---------H-HH
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVT-SVR---SPRQVIDALNA--EGSDIDLILAEVDLPMTK-G---------L-KM 96 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~-~As---dg~EALe~L~~--~~~~PDLIILDi~MP~mD-G---------l-El 96 (558)
+||++.|+-...-...... ..+++|. ..- +..++++.+.. ...+||+|++-+..-+.. + + .+
T Consensus 2 ~iv~~GdS~t~~~~~~~~~-~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l 80 (174)
T cd01841 2 NIVFIGDSLFEGWPLYEAE-GKGKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDI 80 (174)
T ss_pred CEEEEcchhhhcCchhhhc-cCCCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHH
Confidence 5788888877654433332 2345554 222 33344443311 113799999877554421 1 1 34
Q ss_pred HHHHHhhcCCCCceEEEEec
Q 008655 97 LKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 97 L~~Ir~~~~~~~iPVIVLSa 116 (558)
++.+++.. +.++||+++-
T Consensus 81 ~~~~~~~~--p~~~vi~~~~ 98 (174)
T cd01841 81 IEQIREEF--PNTKIYLLSV 98 (174)
T ss_pred HHHHHHHC--CCCEEEEEee
Confidence 55555532 5678888774
No 363
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=34.30 E-value=2.2e+02 Score=27.98 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCEEEEEC-C---HHHHHHHHHhcCCCceEEEEe-CCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR-S---PRQVIDALNAEGSDIDLILAE-VDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As-d---g~EALe~L~~~~~~PDLIILD-i~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
.+.+.+.++..||++.... + -....+.+... ++|-||+. ... + ...++++.. ..+|||++..
T Consensus 29 ~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~--~~dgiii~~~~~---~-~~~~~~~~~----~~ipvV~~~~ 95 (275)
T cd06295 29 LGGIADALAERGYDLLLSFVSSPDRDWLARYLASG--RADGVILIGQHD---Q-DPLPERLAE----TGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhC--CCCEEEEeCCCC---C-hHHHHHHHh----CCCCEEEECC
Confidence 3456667777899876433 2 22344445444 79977663 221 2 244666654 5689998854
No 364
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=34.24 E-value=5e+02 Score=26.32 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~---A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.|.++.. . .+....+..+... .||+|++-.. +.+.+.+++.+++.. ..+|++.++.
T Consensus 154 ~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~--~~dav~~~~~--~~~a~~~i~~~~~~G--~~~~~~~~~~ 225 (336)
T cd06326 154 AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA--RPQAVIMVGA--YKAAAAFIRALRKAG--GGAQFYNLSF 225 (336)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc--CCCEEEEEcC--cHHHHHHHHHHHhcC--CCCcEEEEec
Confidence 3445555555644321 1 3455555555443 5777776542 124566667666543 3455555443
No 365
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.20 E-value=2.7e+02 Score=27.37 Aligned_cols=63 Identities=11% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.||+|.... +. .+.++.+... .+|.||+--. ..+. .++++++.. ..+|||++-.
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~--~~Dgiii~~~--~~~~~~~~i~~~~~----~~iPvV~~~~ 88 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTR--GVNVLIINPV--DPEGLVPAVAAAKA----AGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEecC--CccchHHHHHHHHH----CCCCEEEecC
Confidence 345566667799877543 22 2455555554 7998887421 2222 355666654 5689988854
No 366
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=34.14 E-value=4.6e+02 Score=25.72 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=39.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.|++++-... +.-|..+++.+. ..+|||+ +...... +.+.. .+++.++.+.++|...+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a-----~g~PvI~-~~~~~~~---e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA-----CGLPVVA-TDVGDNA---ELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh-----cCCCEEE-cCCCChH---HHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 5777664433 333566676665 5678875 3333222 22222 66888888999999998888764
No 367
>CHL00101 trpG anthranilate synthase component 2
Probab=34.11 E-value=55 Score=31.73 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAE 85 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILD 85 (558)
|||||-...+-..|.+.|+..|+.+....+....+..+... .||.||+-
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiiis 50 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIIIS 50 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEEC
Confidence 89999999999999999999998877655433222223222 58887753
No 368
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=34.06 E-value=5.6e+02 Score=27.62 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=67.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEE---CCHHHHHHHHHhcCCCceEEEEeC-CCCCC-CHHHHHHHHHhhcC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSV---RSPRQVIDALNAEGSDIDLILAEV-DLPMT-KGLKMLKYITRDKE 105 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye-V~~A---sdg~EALe~L~~~~~~PDLIILDi-~MP~m-DGlElL~~Ir~~~~ 105 (558)
.++++|+.|-+. +..|.+.+.+.+.+ ++.. -..++..+.+.. .|+.++=. ...+. =+..+++.+.
T Consensus 269 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~~~~~~~~~~~p~~~~Eama---- 339 (415)
T cd03816 269 KLLCIITGKGPL-KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVSLHTSSSGLDLPMKVVDMFG---- 339 (415)
T ss_pred CEEEEEEecCcc-HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEEccccccccCCcHHHHHHHH----
Confidence 378888887654 66777787777753 4433 245666666653 57776411 11111 1445565543
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||. |.... ..+.+..|-.+++.. +.++|.+.+..++..
T Consensus 340 -~G~PVI~-s~~~~---~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 -CGLPVCA-LDFKC---IDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred -cCCCEEE-eCCCC---HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 6789987 33332 345667788899883 889999999888765
No 369
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=34.05 E-value=78 Score=32.85 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSA------QDEVSVVVKCLRLGAADYLVKPLRTNELL 145 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa------~~d~e~a~eAL~~GA~DYL~KP~~~eeL~ 145 (558)
+.++++++|++.. ..+|+|+|+= +.-.....+|-++|++++|.--+..++-.
T Consensus 73 ~~~~~~~~ir~~~--~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~ 130 (259)
T PF00290_consen 73 KIFELVKEIRKKE--PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESE 130 (259)
T ss_dssp HHHHHHHHHHHHC--TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH
T ss_pred HHHHHHHHHhccC--CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHH
Confidence 4578888888433 7899999994 33345777888999999999877665543
No 370
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=34.00 E-value=4.3e+02 Score=26.62 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=61.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++||.+-+. ...+...+...+. .|....-..+..+.+. ..|+.++--.. +.-|+.+++.+- ..+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~ps~~-E~~~~~~lEAma-----~G~ 291 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ----AMDVFLFPSLY-EGLPLVLIEAQA-----SGL 291 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEecccc-cCCCHHHHHHHH-----hCC
Confidence 467777776553 3345555544442 2333332334444443 35777754332 334677777664 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||+ |...... +.+.. ...|+..+-+.+++.+++..++....
T Consensus 292 PvI~-s~~~~~~---~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 292 PCIL-SDTITKE---VDLTD-LVKFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CEEE-EcCCchh---hhhcc-CccEEeCCCCHHHHHHHHHHHHhCcc
Confidence 8876 4333322 23333 34677777778999999999877543
No 371
>PLN02366 spermidine synthase
Probab=33.93 E-value=2.8e+02 Score=29.43 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHHHH
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKC-----SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-----GLKMLKYIT 101 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~-----gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD-----GlElL~~Ir 101 (558)
.+|.+||=|+.+.+..++.+... +-+|. ...|+.+.++.... ..+|+||+|..-|..- ..++++.++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 57999999998888888876532 12343 55677777764422 2799999998665422 235566665
Q ss_pred hh
Q 008655 102 RD 103 (558)
Q Consensus 102 ~~ 103 (558)
+.
T Consensus 194 ~~ 195 (308)
T PLN02366 194 RA 195 (308)
T ss_pred Hh
Confidence 53
No 372
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.88 E-value=1.8e+02 Score=28.95 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVRS--PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asd--g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+.+.+++.||++..+.. ..+.++.+... .+|-||+--. +.. ...+++++. ..+|||++-.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~--~~dgiii~~~-~~~--~~~~~~~~~----~~ipvV~~~~ 87 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSA--LVDGFIVYGV-PRD--DPLVAALLR----RGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhc--CCCEEEEeCC-CCC--hHHHHHHHH----cCCCEEEEec
Confidence 445566777788998875443 34666666555 7897776432 111 245666664 4679988853
No 373
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.80 E-value=4.2e+02 Score=27.33 Aligned_cols=99 Identities=6% Similarity=0.087 Sum_probs=62.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEE-eC-CCCC------CCHHHHHHHHHh
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVT--SVR-SPRQVIDALNAEGSDIDLILA-EV-DLPM------TKGLKMLKYITR 102 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~--~As-dg~EALe~L~~~~~~PDLIIL-Di-~MP~------mDGlElL~~Ir~ 102 (558)
-|||.|=...-...+...+.+.|...+ ++. +..+-++.+... .++.|-+ .+ ...+ .+..++++++++
T Consensus 120 GviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 120 GLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASH--ASGFVYYVSRAGVTGARSADAADLAELVARLKA 197 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHh
Confidence 356666666666667777778886643 333 334555555554 4555533 11 1111 234568888887
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
. .++||++=.+-.+.+.+.+++.. |+..+.-.
T Consensus 198 ~---~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 198 H---TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred c---CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 4 57899987777788888888875 99998765
No 374
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.72 E-value=4.6e+02 Score=27.69 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=59.2
Q ss_pred CCcEEEEE--eCCHHHH---HHHHHHHHhCCCEEEEECCHHH---HHH-------H--HHhcCCCceEEEEeCCCCCCCH
Q 008655 31 SKVRILLC--DNDSNSS---DAVFSLLVKCSYQVTSVRSPRQ---VID-------A--LNAEGSDIDLILAEVDLPMTKG 93 (558)
Q Consensus 31 ~~irVLIV--DDd~~~r---~~L~~lL~~~gyeV~~Asdg~E---ALe-------~--L~~~~~~PDLIILDi~MP~mDG 93 (558)
.+.+|+|+ -+.+... ..|...|.+.|++|........ ++. . .......+|+||+= |.||
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~l----GGDG 79 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVL----GGDG 79 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEE----CCcH
Confidence 34457777 3444444 3445556677888775431110 110 0 01111146777753 6787
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|+..+... ...+||+=+- .|=.+||. .+..+++...+..+++.
T Consensus 80 -T~L~aa~~~~-~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 80 -TFLSVAREIA-PRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred -HHHHHHHHhc-ccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcC
Confidence 3555555432 2578988665 36688988 58888888888887754
No 375
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.55 E-value=5.5e+02 Score=26.39 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
++++++|++. ..+|||...+-.+.+.+.+++.+||+.+
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 5778888764 4789999889899999999999999766
No 376
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=33.54 E-value=4.9e+02 Score=25.88 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=60.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC---CCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC---SYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~---gyeV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.++++|+.+..... .+...+... .-.|.... +..+..+.+.. .|++++-....+.-|+.+++.+.
T Consensus 197 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma----- 266 (335)
T cd03802 197 GIPLKLAGPVSDPD-YFYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA----- 266 (335)
T ss_pred CCeEEEEeCCCCHH-HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh-----
Confidence 35677777664322 222222211 22333322 45555666653 57777655444555777777664
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
..+|||..-.-. ..+.+..|...|+..+ .++|...+..+..
T Consensus 267 ~G~PvI~~~~~~----~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~ 307 (335)
T cd03802 267 CGTPVIAFRRGA----VPEVVEDGVTGFLVDS--VEELAAAVARADR 307 (335)
T ss_pred cCCCEEEeCCCC----chhheeCCCcEEEeCC--HHHHHHHHHHHhc
Confidence 567888443322 2345667888999887 8888888877643
No 377
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=33.52 E-value=2.8e+02 Score=26.81 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDG--lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+...+.+.||.+..+. +.. ++++.+... .+|-||+- +..+. .++++.++. ..+|+|++..
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~dgii~~---~~~~~~~~~~l~~l~~----~~ipvv~~~~ 88 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITR--GVDAIIIN---PTDSDAVVPAVKAANE----AGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHc--CCCEEEEc---CCChHHHHHHHHHHHH----CCCcEEEEcc
Confidence 345566667799887553 333 444444444 68987763 22222 356677654 5689998855
No 378
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=33.43 E-value=5.4e+02 Score=27.58 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHH-------HHhCCC--EE-EEECCHHHHHHHHH------hcCCCceEEEEeCC--CCC---CC
Q 008655 34 RILLCDNDSNSSDAVFSL-------LVKCSY--QV-TSVRSPRQVIDALN------AEGSDIDLILAEVD--LPM---TK 92 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~l-------L~~~gy--eV-~~Asdg~EALe~L~------~~~~~PDLIILDi~--MP~---mD 92 (558)
.|||=|.+-.+.-.+... +...++ .| +.+.+.+++.+.+. . .+|+|++|=. -|. .+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~a---gaDiImLDnm~~~~~~~~~~ 248 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKT---SLTRVMLDNMVVPLENGDVD 248 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccC---CCCEEEeCCCcccccccCCC
Confidence 477777665443222222 223333 34 48889999999987 4 5899999943 111 03
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
--++-+.+... .....|-.|+--+.+.+.+....|++-.
T Consensus 249 ~e~l~~av~~~---~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 249 VSMLKEAVELI---NGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHHHHhh---CCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 33333333322 1223477788888888888888887654
No 379
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=33.33 E-value=1.1e+02 Score=32.95 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHH----HHHHHHHcCC--CEEEeC
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVS----VVVKCLRLGA--ADYLVK 137 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e----~a~eAL~~GA--~DYL~K 137 (558)
-++++.++......++|+|+||+--+.+ .+.-|+++|| .+||.=
T Consensus 227 ~eA~~~f~eq~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~G 276 (325)
T TIGR01232 227 EEAAQHFKDQDAATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCG 276 (325)
T ss_pred HHHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEee
Confidence 4788888865555789999999866643 5667788999 799864
No 380
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.26 E-value=6.1e+02 Score=28.53 Aligned_cols=94 Identities=10% Similarity=0.170 Sum_probs=60.2
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHHhhcC------CCCceEEEEecCCCHH
Q 008655 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM--------TKGLKMLKYITRDKE------LQRIPVIMMSAQDEVS 121 (558)
Q Consensus 57 yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~--------mDGlElL~~Ir~~~~------~~~iPVIVLSa~~d~e 121 (558)
..+. ++.+..|+.+.... .+|-|.+.--.|- .=|++.++++.+.-. ..++||+.|-+- +.+
T Consensus 301 ~iIGvStHs~eEl~~A~~~---gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~ 376 (437)
T PRK12290 301 IRLGLSTHGYYELLRIVQI---QPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQS 376 (437)
T ss_pred CEEEEecCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHH
Confidence 3454 66788887776543 6999998764442 137777777655310 126899999875 456
Q ss_pred HHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHH
Q 008655 122 VVVKCLRLGAADY-----LVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 122 ~a~eAL~~GA~DY-----L~KP~~~eeL~~~L~~llr~ 154 (558)
.+.++++.||..+ |.+.-++.+....+.+++..
T Consensus 377 Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 377 NAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 6788999999888 33444555555545544443
No 381
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.22 E-value=2.5e+02 Score=27.26 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asd---g---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+...+.+.||++..... . .++++.+... .+|.||+....+. . ..++++.. ..+|||++-.
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 18 LRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHhc----CCCCEEEEec
Confidence 34455566677998764432 2 2455666554 7898876543332 2 34666654 5689988753
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.13 E-value=6e+02 Score=28.32 Aligned_cols=103 Identities=12% Similarity=0.108 Sum_probs=54.7
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEeCC--CCCCCHHHHHHHHHhhc
Q 008655 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEG--SDIDLILAEVD--LPMTKGLKMLKYITRDK 104 (558)
Q Consensus 32 ~irVLIVDDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~--~~PDLIILDi~--MP~mDGlElL~~Ir~~~ 104 (558)
..+|.+|+-|+. ....|...-...++.+..+.++.+..+.+.... ...|+||+|-- ++ ..-+.+++|....
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~--~d~~~l~EL~~l~ 311 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNY--LAEESVSEISAYT 311 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCc--cCHHHHHHHHHHh
Confidence 468888888764 133455555555666666777777665554321 25899999973 22 1223334433211
Q ss_pred --CCCCceEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 008655 105 --ELQRIPVIMMSAQDEVSVVVKCL----RLGAADYLV 136 (558)
Q Consensus 105 --~~~~iPVIVLSa~~d~e~a~eAL----~~GA~DYL~ 136 (558)
..++.-++++++......+.+.+ ..+...+|.
T Consensus 312 ~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 312 DVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred hccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 12334455666544443343433 345555543
No 383
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.04 E-value=2.8e+02 Score=27.40 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=53.0
Q ss_pred ECCHHHHHHHHHhcCCCc-eEEEEeCCCCC---CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 62 VRSPRQVIDALNAEGSDI-DLILAEVDLPM---TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~P-DLIILDi~MP~---mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
..++.++++.+... .+ .++++|+.--+ ..-++++++|.+. ..+||++=.+-.+.+.+.+++..|++..+.-
T Consensus 29 ~~dp~~~a~~~~~~--g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAK--GADELIVLDIDASKRGREPLFELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHc--CCCEEEEEeCCCcccCCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34888888888665 34 48888996543 2346778888764 5689887777888888888999998877654
No 384
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.98 E-value=2.6e+02 Score=29.15 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcC----CCceEEEEeCCCCCCCHHHHH-HHHHhh
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEG----SDIDLILAEVDLPMTKGLKML-KYITRD 103 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~----~~PDLIILDi~MP~mDGlElL-~~Ir~~ 103 (558)
+++-++||-.-+.-+-..+.+.|.+.||.|+ ++.+.+-..++..+.. ..++++-+|+ ...+.++-+ ..|+..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL--s~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL--SDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC--CChhHHHHHHHHHHhc
Confidence 3456899999999999999999999999977 6666554433333321 1235555555 454555544 355543
Q ss_pred cCCCCceEEEEe
Q 008655 104 KELQRIPVIMMS 115 (558)
Q Consensus 104 ~~~~~iPVIVLS 115 (558)
. ..+-|+|=.
T Consensus 82 ~--~~IdvLVNN 91 (265)
T COG0300 82 G--GPIDVLVNN 91 (265)
T ss_pred C--CcccEEEEC
Confidence 2 344555443
No 385
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=32.97 E-value=3.6e+02 Score=26.76 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=54.4
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCC-CceEEEEecCCCHHHHHHH
Q 008655 50 SLLVKCSYQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKC 126 (558)
Q Consensus 50 ~lL~~~gyeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~-~iPVIVLSa~~d~e~a~eA 126 (558)
+.....+.-+ .-+.+..|+.+..+. ..|.|-+ .| ..=|++.++.++.. .+ ++|++.+.+- +.+.+.+.
T Consensus 98 ~~~~~~~~~~~~G~~t~~E~~~A~~~---Gad~vk~---Fpa~~~G~~~l~~l~~~--~~~~ipvvaiGGI-~~~n~~~~ 168 (206)
T PRK09140 98 RRAVALGMVVMPGVATPTEAFAALRA---GAQALKL---FPASQLGPAGIKALRAV--LPPDVPVFAVGGV-TPENLAPY 168 (206)
T ss_pred HHHHHCCCcEEcccCCHHHHHHHHHc---CCCEEEE---CCCCCCCHHHHHHHHhh--cCCCCeEEEECCC-CHHHHHHH
Confidence 3344445443 368889998887754 4788875 44 23478889998864 23 5898877765 66888999
Q ss_pred HHcCCCEEE
Q 008655 127 LRLGAADYL 135 (558)
Q Consensus 127 L~~GA~DYL 135 (558)
+++||+.+-
T Consensus 169 ~~aGa~~va 177 (206)
T PRK09140 169 LAAGAAGFG 177 (206)
T ss_pred HHCCCeEEE
Confidence 999998874
No 386
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.85 E-value=2.5e+02 Score=28.13 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 41 DSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 41 d~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
+|.+-..+.+...+.+.-++ -+.+..|+...++. ..|+|=+ .| +.-|.+.++.|+.. ++++|++. ++--
T Consensus 94 sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~---Gad~vkl---FPa~~~G~~~ik~l~~~--~p~ip~~a-tGGI 164 (213)
T PRK06552 94 SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEA---GSEIVKL---FPGSTLGPSFIKAIKGP--LPQVNVMV-TGGV 164 (213)
T ss_pred CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHc---CCCEEEE---CCcccCCHHHHHHHhhh--CCCCEEEE-ECCC
Confidence 45555556666667776655 67789999988754 5888886 34 34578999999863 57789774 4445
Q ss_pred CHHHHHHHHHcCCCEE
Q 008655 119 EVSVVVKCLRLGAADY 134 (558)
Q Consensus 119 d~e~a~eAL~~GA~DY 134 (558)
+.+.+.+.+++||+.+
T Consensus 165 ~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 165 NLDNVKDWFAAGADAV 180 (213)
T ss_pred CHHHHHHHHHCCCcEE
Confidence 5788999999998776
No 387
>PRK06769 hypothetical protein; Validated
Probab=32.82 E-value=4.3e+02 Score=24.99 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHhCCCEEEEECCHH----------HHHHHHHhcCCCceEEEEeCCC------CCCCHHHHHHHHHhhcCCCCceEE
Q 008655 49 FSLLVKCSYQVTSVRSPR----------QVIDALNAEGSDIDLILAEVDL------PMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 49 ~~lL~~~gyeV~~Asdg~----------EALe~L~~~~~~PDLIILDi~M------P~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+.|.+.|+.+..++|.. .++..+... .++-++..... .....-+++.++.+......--+|
T Consensus 37 L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i 114 (173)
T PRK06769 37 LQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGF--GFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCA 114 (173)
T ss_pred HHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhC--CcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 334566688887777643 234444433 34444443321 122223333333332211222366
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
++-.. ...+..|.++|+.-++..+
T Consensus 115 ~IGD~--~~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 115 VIGDR--WTDIVAAAKVNATTILVRT 138 (173)
T ss_pred EEcCC--HHHHHHHHHCCCeEEEEec
Confidence 66643 4677788999998887765
No 388
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=32.81 E-value=5.2e+02 Score=25.87 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=62.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSV--RSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~A--sdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~~Ir~ 102 (558)
.++++|+.+.+. ...+...+...+. .|... -+..+..+.+.. .|++++-..-+ +.-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 355555554432 2334444444321 23222 234556666543 47666643321 223667777665
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
..+|||.. .... ..+.+..+..+++.++-+.++|.+.+..++...
T Consensus 284 ----~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 284 ----MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPEALADAIERLLDDP 328 (355)
T ss_pred ----cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 56788753 2222 234667787899999999999999988876543
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.79 E-value=3.7e+02 Score=31.13 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=33.4
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 33 VRILLCDNDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 33 irVLIVDDd~~~---r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
.+|.+|+-|..- ...|...-...++.+..+.+..+..+.+... ..+|+||+|.
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDT 436 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDT 436 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecC
Confidence 478888766421 2233333334466677777777777777654 3689999997
No 390
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=32.77 E-value=3.3e+02 Score=28.96 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=45.9
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.+.+.+.+++.+.+.. .+|+|.+|=. +--++-+.+... ..-.+|..|+--+.+.+.+..+.|++-+.
T Consensus 212 eVEv~sleea~ea~~~---gaDiI~LDn~----s~e~~~~av~~~---~~~~~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 212 EVEVENLDELDQALKA---GADIIMLDNF----TTEQMREAVKRT---NGRALLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEeCCC----ChHHHHHHHHhh---cCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4488899999999975 4899999943 322333333321 12245677778888889898999987653
No 391
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=32.71 E-value=1.8e+02 Score=31.55 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
|....+..+-++.|.+. ..|+|++|..--... -++++++|++.. +++||| .-.-.+.+.+...+++||+....
T Consensus 103 vg~~~~~~er~~~L~~a--gvD~ivID~a~g~s~~~~~~ik~ik~~~--~~~~vi-aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 103 VGTRDDDFERAEALVEA--GVDVIVIDSAHGHSEHVIDMIKKIKKKF--PDVPVI-AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp EESSTCHHHHHHHHHHT--T-SEEEEE-SSTTSHHHHHHHHHHHHHS--TTSEEE-EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred ecCCHHHHHHHHHHHHc--CCCEEEccccCccHHHHHHHHHHHHHhC--CCceEE-ecccCCHHHHHHHHHcCCCEEEE
No 392
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.58 E-value=1.6e+02 Score=30.58 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=40.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcC-CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKE-LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~-~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|+||+= |.|| .+|+.++.... ...+||+=+- .|-.+||. .+..+++...+.++++.
T Consensus 35 ~~Dlvi~i----GGDG-T~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVISV----GGDG-TLLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEEE----CCcH-HHHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcC
Confidence 57888763 6777 46666665332 1478888554 47788998 67888888888887654
No 393
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=32.56 E-value=4.9e+02 Score=26.39 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=34.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
..+|..||-++...+..+.-+...+.++.. .|..+.+..... ..+|+|++|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECC
Confidence 458999999999998888777766655543 344433322111 2699999984
No 394
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.49 E-value=5.4e+02 Score=26.58 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=57.8
Q ss_pred EEEEEeCCHHHHHHHH----HHHHhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHHHhhcC
Q 008655 34 RILLCDNDSNSSDAVF----SLLVKCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDKE 105 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~----~lL~~~g--yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlE-lL~~Ir~~~~ 105 (558)
.|||-|.+..+.-.+. .+-+..+ ..+ +.+.+.+|+.+.+.. .+|+|.+|-.-| +.+. +++.++..
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~-- 225 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGL-- 225 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccC--
Confidence 6777777755443222 2222233 233 478899999999864 589999986444 2222 22333221
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+++| |+.++--+.+.+.+..+.||+.+..
T Consensus 226 -~~i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 226 -PRVL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred -CCeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3555 4556667778888999999987743
No 395
>PLN02275 transferase, transferring glycosyl groups
Probab=32.45 E-value=5.4e+02 Score=27.15 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=64.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEE---CCHHHHHHHHHhcCCCceEEEEeC-CCCCC-CHHHHHHHHHhhcC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSV---RSPRQVIDALNAEGSDIDLILAEV-DLPMT-KGLKMLKYITRDKE 105 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye-V~~A---sdg~EALe~L~~~~~~PDLIILDi-~MP~m-DGlElL~~Ir~~~~ 105 (558)
.++.+||.|-+. +..|.+.+.+.|.+ |... -..++.-+.+.. .|+.++=. ..-+. =+..+++.+.
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA---- 331 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFG---- 331 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHH----
Confidence 578999998764 56788888777643 4432 245666666653 58877411 11011 1455665553
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
..+|||... ... ..+.++.|..+|+.. +.++|.+.+.++
T Consensus 332 -~G~PVVa~~-~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 332 -CGLPVCAVS-YSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred -CCCCEEEec-CCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 678998743 232 446677899999985 577887777654
No 396
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.42 E-value=3.5e+02 Score=27.37 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=54.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD--GlElL~~Ir~~~~~~~i 109 (558)
.+-|+=+..+..+...+...|...|..+....+.......+... .+-|++| =+...+.+ -+++++..+. ..+
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~-~~~Dv~I-~iS~sg~~~~~~~~~~~ak~----~ga 203 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQAL-SPDDLLL-AISYSGERRELNLAADEALR----VGA 203 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhC-CCCCEEE-EEcCCCCCHHHHHHHHHHHH----cCC
Confidence 34444455566667777777778888887766665555444333 2456554 34555543 3566666665 578
Q ss_pred eEEEEecCCCHHHH
Q 008655 110 PVIMMSAQDEVSVV 123 (558)
Q Consensus 110 PVIVLSa~~d~e~a 123 (558)
+||++|........
T Consensus 204 ~iI~IT~~~~s~la 217 (278)
T PRK11557 204 KVLAITGFTPNALQ 217 (278)
T ss_pred CEEEEcCCCCCchH
Confidence 99999997665533
No 397
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.24 E-value=1.8e+02 Score=25.57 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=51.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHhhcCCCCceEEEEec
Q 008655 39 DNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 39 DDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+..+...+...|...|..+....+.......+... .+-|++|+ +..++. +-+++++..++ ..++||.+|.
T Consensus 9 G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~----~g~~vi~iT~ 82 (128)
T cd05014 9 GKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR----RGAPIIAITG 82 (128)
T ss_pred cHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH----CCCeEEEEeC
Confidence 3444555677777777787776655543332222211 12355443 344543 45667777665 5789999999
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCC
Q 008655 117 QDEVSVVVKCLRLGAADYLVKPL 139 (558)
Q Consensus 117 ~~d~e~a~eAL~~GA~DYL~KP~ 139 (558)
..+.... ..|+-.|.-|.
T Consensus 83 ~~~s~la-----~~ad~~l~~~~ 100 (128)
T cd05014 83 NPNSTLA-----KLSDVVLDLPV 100 (128)
T ss_pred CCCCchh-----hhCCEEEECCC
Confidence 7765533 24666666553
No 398
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=32.23 E-value=47 Score=32.61 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHHhhcCCCCceEEEEec
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMTK-------GLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~mD-------GlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
.+..+.+.+. ++|++++|+..- ++ -..+++.|++.+ |.+|||+++.
T Consensus 49 ~~~a~~ia~~--~a~~~~ld~~~N-~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~ 101 (178)
T PF14606_consen 49 PEVADLIAEI--DADLIVLDCGPN-MSPEEFRERLDGFVKTIREAH--PDTPILLVSP 101 (178)
T ss_dssp HHHHHHHHHS----SEEEEEESHH-CCTTTHHHHHHHHHHHHHTT---SSS-EEEEE-
T ss_pred HHHHHHHhcC--CCCEEEEEeecC-CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEec
Confidence 4556666665 789999998532 22 345778888765 8999999995
No 399
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.15 E-value=4.8e+02 Score=25.54 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS--PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~A-sd--g~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~ 105 (558)
+..-+|||..-...+-..+.+.|...|+.|+.+ .+ .+++.+.+... ...+.++.+++...+.+ .+++++.+..
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~~- 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALEEF- 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 344689999999999999999999999987643 33 23333344332 23444444555554444 3566666542
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+-+|+..+
T Consensus 90 -g~id~li~~a 99 (258)
T PRK06935 90 -GKIDILVNNA 99 (258)
T ss_pred -CCCCEEEECC
Confidence 5567777654
No 400
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.97 E-value=2.2e+02 Score=27.83 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCC-CH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMT-KG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~m-DG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.||.+.... +. .+.++.+... .+|-||+.-..+.. .. .+.+..+.. ..+|||++-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~~~~~~~~i~~~~~----~~ipvV~i~~ 91 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLAR--GVRGVVFISSLHADTHADHSHYERLAE----RGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEeCCCCCcccchhHHHHHHHh----CCCCEEEEcC
Confidence 455666667899876433 22 2556666655 78987774333222 11 234555543 5688888853
No 401
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.97 E-value=4.5e+02 Score=27.58 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=45.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.+.+.+++.+.+.. .+|+|.+|-. +.+.++++.+.. .+.+||++ ++--+.+.+.+....|++.+-.
T Consensus 194 VEv~tleea~eA~~~---gaD~I~LD~~-----~~e~l~~~v~~~-~~~i~leA-sGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 194 VEVESLDELRQALAA---GADIVMLDEL-----SLDDMREAVRLT-AGRAKLEA-SGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCC-----CHHHHHHHHHHh-CCCCcEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 378899999998864 5999999832 445555554421 13566554 4455677888889999987743
No 402
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=31.92 E-value=5.5e+02 Score=25.91 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 46 DAVFSLLVKCSYQVTSV-------RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~A-------sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
..+...++..|++|... .+....+..+... .||+||+... ..+...+++.+++.. ...++|..
T Consensus 153 ~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~--~~~~vi~~~~--~~~~~~~~~~~~~~g--~~~~~~~~ 222 (334)
T cd06342 153 DEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAA--NPDAVFFGGY--YPEAGPLVRQMRQLG--LKAPFMGG 222 (334)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc--CCCEEEEcCc--chhHHHHHHHHHHcC--CCCcEEec
Confidence 44556666678776522 3455666666654 7999987543 346777888887754 34455443
No 403
>PHA03237 envelope glycoprotein M; Provisional
Probab=31.82 E-value=29 Score=38.51 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhccCCCC--ccchhhhhhhhccC
Q 008655 474 RREAALIKFRQKRKERCFDK--KIRYVNRKRLAERR 507 (558)
Q Consensus 474 ~r~~~~~r~~~k~~~r~~~k--~i~y~~rk~~a~~r 507 (558)
=|.-|--.|.+||.+|-|.+ ++|=..|+.+.-.|
T Consensus 345 vRlvRa~~yHr~~~t~fy~~v~~~~~~~~~~~~r~r 380 (424)
T PHA03237 345 VRLVRACLYHRRRSTRFYGRVKTVQQKVKRYLNRVR 380 (424)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 37778888998888887763 33333344443333
No 404
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=31.77 E-value=2.8e+02 Score=30.30 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=52.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-HHhhcCCCCc
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-V-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY-ITRDKELQRI 109 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gye-V-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~-Ir~~~~~~~i 109 (558)
.+|+.+|-++...+.++.-++..+.. + +...|..+.+.. . ..+|+|++|- |+ .+.+++.. |... .+-
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~G-s~~~~l~~al~~~---~~~ 151 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--FG-SPAPFLDSAIRSV---KRG 151 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--CC-CcHHHHHHHHHHh---cCC
Confidence 47999999999999999888766643 2 344566555432 2 2699999985 44 34567666 5543 344
Q ss_pred eEEEEecCCCH
Q 008655 110 PVIMMSAQDEV 120 (558)
Q Consensus 110 PVIVLSa~~d~ 120 (558)
-+|.+|+++..
T Consensus 152 gilyvSAtD~~ 162 (382)
T PRK04338 152 GLLCVTATDTA 162 (382)
T ss_pred CEEEEEecCch
Confidence 78888876553
No 405
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.69 E-value=4.6e+02 Score=25.58 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=36.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 82 ILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 82 IILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
-++|...--...++.++.|++. ..+||++...-.+...+..++++||+..+
T Consensus 49 ~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 49 SVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred EEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEE
Confidence 3444444444567888888875 47899976544556678899999999997
No 406
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.65 E-value=3.4e+02 Score=26.54 Aligned_cols=64 Identities=9% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+++.||++.... +. .++++.+... .+|-||+--.. .+...+++.+++ .++|||++-.
T Consensus 18 ~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~--~~~~~~~~~~~~----~~ipvV~i~~ 87 (269)
T cd06281 18 FSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQR--RMDGIIIAPGD--ERDPELVDALAS----LDLPIVLLDR 87 (269)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEecCC--CCcHHHHHHHHh----CCCCEEEEec
Confidence 3455666677799877442 22 3555556554 68878774322 233455666665 4678888853
No 407
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=31.64 E-value=2.2e+02 Score=28.98 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asd---g---~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+++.+.+.+...||.+..+.. . .+.++.+... .+|.||+--. ..+. ...++++++ ..+|||++-.
T Consensus 16 ~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~--~vDgIIi~~~--~~~~~~~~l~~~~~----~~iPvV~~d~ 87 (302)
T TIGR02634 16 DRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIAR--GVDVLVIIPQ--NGQVLSNAVQEAKD----EGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--ChhHHHHHHHHHHH----CCCeEEEecC
Confidence 344566777778998775432 2 2455555554 7998887432 1121 355666664 5689998854
No 408
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=31.58 E-value=1.2e+02 Score=28.36 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=20.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
+|||||....+. -++.++|.+ ..+|++++....
T Consensus 60 ~PDlii~~~~~~----~~~~~~l~~----~gi~v~~~~~~~ 92 (195)
T cd01143 60 KPDLVIVSSSSL----AELLEKLKD----AGIPVVVLPAAS 92 (195)
T ss_pred CCCEEEEcCCcC----HHHHHHHHH----cCCcEEEeCCCC
Confidence 799999864332 235566665 456787776543
No 409
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=31.53 E-value=2.7e+02 Score=27.91 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCC-C--HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~MP~m-D--GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
-+..+.++.+...+ --.+|++|+.--++ . .+++++.+.+. ..+|||.--+-.+.+.+.++.+.|++..+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~---~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEA---VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHH---HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHH---cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 35778888877653 45799999965542 3 35778888765 478999888888999999999999988875
No 410
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=31.51 E-value=2.5e+02 Score=29.38 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=51.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC--CC---C--CCCHHHHHHHHHhhcCCCCceEEEEecCC-CHHHHHHHHHcCCC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEV--DL---P--MTKGLKMLKYITRDKELQRIPVIMMSAQD-EVSVVVKCLRLGAA 132 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi--~M---P--~mDGlElL~~Ir~~~~~~~iPVIVLSa~~-d~e~a~eAL~~GA~ 132 (558)
.+.+.++|.+..+.. .+|.+-+.+ -. + ..=|++.|++|++. ..+|++++-+.. ..+.+.++++.|+.
T Consensus 151 s~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~---~~iPlV~hG~SGI~~e~~~~~i~~G~~ 225 (281)
T PRK06806 151 LLTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV---VHIPLVLHGGSGISPEDFKKCIQHGIR 225 (281)
T ss_pred eeCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 367899999988654 578887733 11 1 12378999999875 578999887433 56778899999998
Q ss_pred EEE
Q 008655 133 DYL 135 (558)
Q Consensus 133 DYL 135 (558)
.+=
T Consensus 226 kin 228 (281)
T PRK06806 226 KIN 228 (281)
T ss_pred EEE
Confidence 773
No 411
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.40 E-value=3.7e+02 Score=26.88 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=48.2
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
|+...+.+++++.++.. ..--+=++.+.|-.-+.++.+++|++.. +. -+|=.-+--+.+.+.+++++||.-.++ |
T Consensus 9 Vir~~~~~~a~~ia~al-~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~-~~vGAGTVl~~e~a~~ai~aGA~FivS-P 83 (201)
T PRK06015 9 VLLIDDVEHAVPLARAL-AAGGLPAIEITLRTPAALDAIRAVAAEV--EE-AIVGAGTILNAKQFEDAAKAGSRFIVS-P 83 (201)
T ss_pred EEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHC--CC-CEEeeEeCcCHHHHHHHHHcCCCEEEC-C
Confidence 33444555555555431 0112234555555666888888887643 32 122223456788899999999986666 5
Q ss_pred CCHHHHHHH
Q 008655 139 LRTNELLNL 147 (558)
Q Consensus 139 ~~~eeL~~~ 147 (558)
.-..++.+.
T Consensus 84 ~~~~~vi~~ 92 (201)
T PRK06015 84 GTTQELLAA 92 (201)
T ss_pred CCCHHHHHH
Confidence 555555443
No 412
>PRK04457 spermidine synthase; Provisional
Probab=31.20 E-value=4.9e+02 Score=26.62 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=46.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHHhh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS--YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-----TKGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g--yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-----mDGlElL~~Ir~~ 103 (558)
..+|.+||=++.+....++.+...+ -+|. ...|+.+.+.... ..+|+|++|..-.. +.-.++++.+++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 4689999999999998888775332 2343 4567877776432 36999999963211 2235677776653
No 413
>PRK08185 hypothetical protein; Provisional
Probab=31.12 E-value=2.3e+02 Score=29.87 Aligned_cols=66 Identities=18% Similarity=0.383 Sum_probs=0.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEE-----------eCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCC-HHHHHHHHHc
Q 008655 62 VRSPRQVIDALNAEGSDIDLILA-----------EVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDE-VSVVVKCLRL 129 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PDLIIL-----------Di~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d-~e~a~eAL~~ 129 (558)
.+++++|.+.++.. .+|.+.+ +.. |..+ +++|++|++. .++|+++.-+..- .+...+|++.
T Consensus 148 ~t~peea~~f~~~T--gvD~LAvaiGt~HG~y~~~~k-p~L~-~e~l~~I~~~---~~iPLVlHGgsg~~~e~~~~ai~~ 220 (283)
T PRK08185 148 YTDPEQAEDFVSRT--GVDTLAVAIGTAHGIYPKDKK-PELQ-MDLLKEINER---VDIPLVLHGGSANPDAEIAESVQL 220 (283)
T ss_pred CCCHHHHHHHHHhh--CCCEEEeccCcccCCcCCCCC-CCcC-HHHHHHHHHh---hCCCEEEECCCCCCHHHHHHHHHC
Q ss_pred CCCEE
Q 008655 130 GAADY 134 (558)
Q Consensus 130 GA~DY 134 (558)
|+.-+
T Consensus 221 GI~Ki 225 (283)
T PRK08185 221 GVGKI 225 (283)
T ss_pred CCeEE
No 414
>PRK06849 hypothetical protein; Provisional
Probab=31.04 E-value=3.5e+02 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHH
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVI 69 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EAL 69 (558)
.+.+|||..-.......+.+.|.+.|++|+.+.+....+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 357999999998777788889988999998666544333
No 415
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=30.98 E-value=3.9e+02 Score=23.85 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~-~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++.+|.|+.| +..... ++-.|.+++.+.+.+++.+.++.. ...+.+|++.-.+-..-. +.+.+++ ....
T Consensus 2 ~~~kIaVIGD-~dtv~G----FrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~-~~i~~~~----~~~~ 71 (104)
T PRK01395 2 TMYKIGVVGD-KDSILP----FKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIP-ETIERYD----NQVL 71 (104)
T ss_pred cceeEEEEEC-HHHHHH----HHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhH-HHHHHhc----CCCC
Confidence 4568999998 444433 334577888888777777766542 225777877644322111 2233332 2456
Q ss_pred eEEEEec
Q 008655 110 PVIMMSA 116 (558)
Q Consensus 110 PVIVLSa 116 (558)
|+|+.-.
T Consensus 72 P~Il~IP 78 (104)
T PRK01395 72 PAIILIP 78 (104)
T ss_pred CEEEEeC
Confidence 7776653
No 416
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.71 E-value=3e+02 Score=28.43 Aligned_cols=86 Identities=6% Similarity=0.073 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~~~~~~~ 108 (558)
+.+-++-+--+..+...+...|...|..|....+....+..+... .++-|++-+...+- .-+++++..++ ..
T Consensus 131 ~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~--~~~Dv~i~iS~sG~t~e~i~~a~~ak~----~g 204 (281)
T COG1737 131 RRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALL--TPGDVVIAISFSGYTREIVEAAELAKE----RG 204 (281)
T ss_pred CeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhC--CCCCEEEEEeCCCCcHHHHHHHHHHHH----CC
Confidence 345666677788888889999999999988777776666545444 45544444555553 45667777765 56
Q ss_pred ceEEEEecCCCHHH
Q 008655 109 IPVIMMSAQDEVSV 122 (558)
Q Consensus 109 iPVIVLSa~~d~e~ 122 (558)
.+||.||.......
T Consensus 205 a~vIaiT~~~~spl 218 (281)
T COG1737 205 AKVIAITDSADSPL 218 (281)
T ss_pred CcEEEEcCCCCCch
Confidence 89999998755443
No 417
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.64 E-value=4.6e+02 Score=25.53 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=56.9
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHH
Q 008655 48 VFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126 (558)
Q Consensus 48 L~~lL~~~g-yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eA 126 (558)
+.+.|...+ +-|+...+.+++++.++.. ..--+=++.+.+...+..++++.+++.. +.+. +=...--..+.+..|
T Consensus 5 ~~~~l~~~~~~~v~r~~~~~~~~~~~~~~-~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~-~g~gtvl~~d~~~~A 80 (187)
T PRK07455 5 WLAQLQQHRAIAVIRAPDLELGLQMAEAV-AAGGMRLIEITWNSDQPAELISQLREKL--PECI-IGTGTILTLEDLEEA 80 (187)
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcE-EeEEEEEcHHHHHHH
Confidence 344555555 4567788999998887652 1223456677777888999999888653 2111 101111223678889
Q ss_pred HHcCCCEEEeCCCCHH
Q 008655 127 LRLGAADYLVKPLRTN 142 (558)
Q Consensus 127 L~~GA~DYL~KP~~~e 142 (558)
+++||+.++.--++.+
T Consensus 81 ~~~gAdgv~~p~~~~~ 96 (187)
T PRK07455 81 IAAGAQFCFTPHVDPE 96 (187)
T ss_pred HHcCCCEEECCCCCHH
Confidence 9999987777555544
No 418
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.62 E-value=2.7e+02 Score=26.15 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=29.6
Q ss_pred EEEEEeCCHHHHH--HHHHHHHh-CCCEEEEEC---CH----------HHHHHHHHhcCCCceEEEEeCCCCC
Q 008655 34 RILLCDNDSNSSD--AVFSLLVK-CSYQVTSVR---SP----------RQVIDALNAEGSDIDLILAEVDLPM 90 (558)
Q Consensus 34 rVLIVDDd~~~r~--~L~~lL~~-~gyeV~~As---dg----------~EALe~L~~~~~~PDLIILDi~MP~ 90 (558)
|||++.|+-.... .+...+.. .+++|.... ++ ....+.+... +||+||+-+..-+
T Consensus 1 ril~iGDS~~~g~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEE--KPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHHHHHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHhcC--CCCEEEEEecCCC
Confidence 5889999876542 23334432 356554211 12 1222334433 8999999875543
No 419
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=30.59 E-value=3.1e+02 Score=29.71 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=41.8
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 008655 33 VRILLCDNDSN----SSDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (558)
Q Consensus 33 irVLIVDDd~~----~r~~L~~lL~~~gyeV~~As---------dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~ 99 (558)
-++|||-|... ....+...|+..|..+..+. +.+++.+.+++. ++|+||- +-|.+-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 48999987633 34467777877777655443 356777777766 7999872 345566666655
Q ss_pred HH
Q 008655 100 IT 101 (558)
Q Consensus 100 Ir 101 (558)
|.
T Consensus 107 ia 108 (383)
T PRK09860 107 IA 108 (383)
T ss_pred HH
Confidence 53
No 420
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.58 E-value=1.4e+02 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=21.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+|||||..-.... -++++.|.+ ..+|++++..
T Consensus 69 ~PDlii~~~~~~~---~~~~~~l~~----~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQA---QTILDKLEQ----LGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCc---hhHHHHHHH----cCCCEEEeCC
Confidence 7999998543221 146677765 4689988864
No 421
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=30.56 E-value=3.7e+02 Score=26.71 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=36.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDL 88 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~As-------dg~EALe~L~~~~~~PDLIILDi~M 88 (558)
+|||+.-.-.+-..|.+.|.+.|++|.... +.+...+.+... .||+|+--...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~--~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAI--RPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhC--CCCEEEECCcc
Confidence 588999888889999888888899987432 333333444433 68999865543
No 422
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=30.54 E-value=3.2e+02 Score=26.74 Aligned_cols=67 Identities=16% Similarity=0.319 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHhhcCCCCceEEEEe
Q 008655 44 SSDAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asd---g---~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
+...+.+.+++.||.+..... . .++++.+... .+|.||+--..+.. ...+.++++.. ..+|||++-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~~~~~~~~~~~~~~~~~----~~ipvV~~~ 90 (273)
T cd01541 17 IIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQ--GIDGLIIEPTKSALPNPNIDLYLKLEK----LGIPYVFIN 90 (273)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeccccccccccHHHHHHHHH----CCCCEEEEe
Confidence 344556666777998875432 2 3455555554 79999874322211 12245566654 467988885
Q ss_pred c
Q 008655 116 A 116 (558)
Q Consensus 116 a 116 (558)
.
T Consensus 91 ~ 91 (273)
T cd01541 91 A 91 (273)
T ss_pred c
Confidence 3
No 423
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=30.52 E-value=6e+02 Score=25.93 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=80.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE----EEEECCHHHHHHHHHhcCCCceEEEE----eCCCCCCCH-HHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ----VTSVRSPRQVIDALNAEGSDIDLILA----EVDLPMTKG-LKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye----V~~Asdg~EALe~L~~~~~~PDLIIL----Di~MP~mDG-lElL~~Ir~ 102 (558)
-+.|+-+-++.++...+...= +.|.+ .+...+..++.+.+... .+|.+++ |.++-+.+- ++.|..+++
T Consensus 83 ~~tV~g~A~~~TI~~~i~~A~-~~~~~v~iDl~~~~~~~~~~~~l~~~--gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~ 159 (217)
T COG0269 83 WVTVLGAADDATIKKAIKVAK-EYGKEVQIDLIGVWDPEQRAKWLKEL--GVDQVILHRGRDAQAAGKSWGEDDLEKIKK 159 (217)
T ss_pred EEEEEecCCHHHHHHHHHHHH-HcCCeEEEEeecCCCHHHHHHHHHHh--CCCEEEEEecccHhhcCCCccHHHHHHHHH
Confidence 378999999988877666554 34433 34566889999999865 6999996 666667764 788888887
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHM 151 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~l 151 (558)
.. ...-.|-+++--..+.+..+...|++-||. +--++.+-.+.++..
T Consensus 160 ~~--~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~ 211 (217)
T COG0269 160 LS--DLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEE 211 (217)
T ss_pred hh--ccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHH
Confidence 53 222456677878888999999999988854 444555444444433
No 424
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=30.50 E-value=14 Score=36.30 Aligned_cols=42 Identities=45% Similarity=0.781 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHhhhccCCCCccchhhhhhhhccCCCccc
Q 008655 471 KVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRG 512 (558)
Q Consensus 471 ~~~~r~~~~~r~~~k~~~r~~~k~i~y~~rk~~a~~r~r~~g 512 (558)
....|++.+.||+++++.|.|+++|+|..||..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 355899999999999999999999999999999999999999
No 425
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=30.37 E-value=6.3e+02 Score=26.10 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=64.0
Q ss_pred CcEEEEEeCCH-------HHHHHHHHHHHh-CCC--EEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 008655 32 KVRILLCDNDS-------NSSDAVFSLLVK-CSY--QVTSV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (558)
Q Consensus 32 ~irVLIVDDd~-------~~r~~L~~lL~~-~gy--eV~~A--sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~ 99 (558)
.++++|+.+-+ .....+..++.. .+. .|... -+..+..+.+. ..|++++-... +.-|+.+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~----~ad~~l~~s~~-E~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLS----SARALLYTPSN-EHFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHh----hCeEEEECCCc-CCCCchHHHH
Confidence 57788887532 123455566655 443 34332 24455555554 35888864332 2235666666
Q ss_pred HHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 100 Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+. ..+|||..-... ..+.+..|..+|+..+ +.+++...+..++..
T Consensus 320 ma-----~G~PvI~s~~~~----~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 MY-----AGKPVIACNSGG----PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HH-----cCCCEEEECCCC----cHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 54 568888643322 2244556778888866 889998888887753
No 426
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.34 E-value=2e+02 Score=27.09 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCceEEEEeCCCCCCCHHHH-HHHHHhhcCCCCceEE-EEecCCCHHHHHHHHHcCCCEEEe
Q 008655 68 VIDALNAEGSDIDLILAEVDLPMTKGLKM-LKYITRDKELQRIPVI-MMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 68 ALe~L~~~~~~PDLIILDi~MP~mDGlEl-L~~Ir~~~~~~~iPVI-VLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..+.|++. +||+||+=.-+|. .+ +..+++......+|++ ++|..... -...+.-|++-|+.
T Consensus 81 l~~~l~~~--~PD~IIsThp~~~----~~~l~~lk~~~~~~~~p~~tvvTD~~~~--H~~W~~~~~D~y~V 143 (169)
T PF06925_consen 81 LIRLLREF--QPDLIISTHPFPA----QVPLSRLKRRGRLPNIPVVTVVTDFDTV--HPFWIHPGVDRYFV 143 (169)
T ss_pred HHHHHhhc--CCCEEEECCcchh----hhHHHHHHHhhcccCCcEEEEEcCCCCC--CcCeecCCCCEEEE
Confidence 34445554 8999999887764 33 4445554433467876 66765321 12356778888876
No 427
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=30.30 E-value=4.4e+02 Score=26.97 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=46.3
Q ss_pred EEEEEeCC-H---HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 34 RILLCDND-S---NSSDAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 34 rVLIVDDd-~---~~r~~L~~lL~~~gyeV~~---A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
+|.|+-++ . .....+...|+..|++|.. . .|-...+..+... .||+|++... ..+...+++.+++
T Consensus 134 ~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~~--~~~~~~~~~~~~~ 209 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAAS--GADAVLSTLV--GQDAVAFNRQFAA 209 (333)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHc--CCCEEEEeCC--CCchHHHHHHHHH
Confidence 55554433 2 3345667777788887641 1 2444556666655 7999988754 3456788888887
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
.. -..+++..+.
T Consensus 210 ~G--~~~~~~~~~~ 221 (333)
T cd06358 210 AG--LRDRILRLSP 221 (333)
T ss_pred cC--CCccCceeec
Confidence 54 3345555444
No 428
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.24 E-value=1.1e+02 Score=31.28 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=34.0
Q ss_pred CCcEEEEEe------CC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe
Q 008655 31 SKVRILLCD------ND--SNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAE 85 (558)
Q Consensus 31 ~~irVLIVD------Dd--~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILD 85 (558)
++++|.|+- .+ ...-..+...|++.|++|.......+.++.+... .+|+||.=
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~--~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKEL--GFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccC--CCCEEEEe
Confidence 455676665 11 1233567777888899887666555666666544 68888864
No 429
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.20 E-value=32 Score=31.23 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=22.4
Q ss_pred CceEEEEeCCCCCC----C------H-HHHHHHHHhhcCCCCceEEEEec
Q 008655 78 DIDLILAEVDLPMT----K------G-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 78 ~PDLIILDi~MP~m----D------G-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+||+|++-+..-+. + . -++++.|+... +.++||+++-
T Consensus 40 ~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~~~ 87 (157)
T cd01833 40 KPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN--PDVKIIVATL 87 (157)
T ss_pred CCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhC--CCeEEEEEeC
Confidence 89999996544432 1 1 24566666543 5677776653
No 430
>PRK09072 short chain dehydrogenase; Provisional
Probab=30.13 E-value=5.4e+02 Score=25.27 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHH
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQV 68 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EA 68 (558)
.++.-+|||..-...+...+...|.+.|++|+ .+.+....
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~ 42 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKL 42 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 34456799999999999999998888899987 44454433
No 431
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=30.09 E-value=7.4e+02 Score=26.85 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHH
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL 144 (558)
.++..+++.......|++++--. -+.-|+.+++.+. ..+|||.... .. ..+.+..|..+|+..|.+.++|
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~-~E~fg~~~lEAma-----~G~PvV~s~~-gg---~~eiv~~~~~G~lv~~~d~~~l 396 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPAL-TEPFGLTLLEAAA-----CGLPIVATDD-GG---PRDIIANCRNGLLVDVLDLEAI 396 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccc-cCCcccHHHHHHH-----hCCCEEEeCC-CC---cHHHhcCCCcEEEeCCCCHHHH
Confidence 44444444321012377654321 1333667777765 5678875543 32 2345567889999999999999
Q ss_pred HHHHHHHHHH
Q 008655 145 LNLWTHMWRR 154 (558)
Q Consensus 145 ~~~L~~llr~ 154 (558)
...+..++..
T Consensus 397 a~~i~~ll~~ 406 (439)
T TIGR02472 397 ASALEDALSD 406 (439)
T ss_pred HHHHHHHHhC
Confidence 9999888764
No 432
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=30.01 E-value=4.7e+02 Score=26.71 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=43.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS-----YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTK-----GLKMLKYI 100 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g-----yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD-----GlElL~~I 100 (558)
..+|.+||-++.+.+..++.+...+ -++. ...++.+.++.. ...+|+||+|..-|... ..++++.+
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~ 172 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPVGPAETLFTKEFYELL 172 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCCCcccchhHHHHHHHH
Confidence 3579999999999888888774321 1222 346676666543 23799999998644322 23555555
Q ss_pred Hh
Q 008655 101 TR 102 (558)
Q Consensus 101 r~ 102 (558)
++
T Consensus 173 ~~ 174 (270)
T TIGR00417 173 KK 174 (270)
T ss_pred HH
Confidence 54
No 433
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=29.90 E-value=1.4e+02 Score=29.75 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=49.6
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008655 56 SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (558)
Q Consensus 56 gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~D 133 (558)
++.|..-.+.+++.+++.. ..|+|=+|...-. .+--+++++|+.. . +++|..-.+.+....|.++|++
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp~~l~~li~~i~~~---~---~l~MADist~ee~~~A~~~G~D- 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRPETLEELIREIKEK---Y---QLVMADISTLEEAINAAELGFD- 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-SS-HHHHHHHHHHC---T---SEEEEE-SSHHHHHHHHHTT-S-
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCCcCHHHHHHHHHHh---C---cEEeeecCCHHHHHHHHHcCCC-
Confidence 4567777889999999876 4899999984422 6778899999874 2 7788888999999999999954
Q ss_pred EEe
Q 008655 134 YLV 136 (558)
Q Consensus 134 YL~ 136 (558)
|+.
T Consensus 115 ~I~ 117 (192)
T PF04131_consen 115 IIG 117 (192)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 434
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=29.86 E-value=1.3e+02 Score=33.33 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
.+++..||||.-.--+.+.+.+.|.+.||.|. .+.+...+.+++... .-|..+.++......+.+.+..+....
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~--~~d~~~~~v~~~~~~~~d~~~~~~~~~ 150 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVF--FVDLGLQNVEADVVTAIDILKKLVEAV 150 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccc--ccccccceeeeccccccchhhhhhhhc
Confidence 34578999999999999999999999999887 788999999988622 468888899999999999998888753
No 435
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=29.82 E-value=78 Score=30.43 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM----TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~----mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
..|.. |+..|+.+. -+..+...++.+... .||.|-+|..+.. .....+++.|........+ -|++++-++
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l--~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASL--PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGI-KVIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHH--CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT--EEEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhc--ccccceeecccccccchhhHHHHHHHHHHHhhcccc-ccceeecCC
Confidence 34443 667898865 566666677777666 7999999986552 2334455555443222344 455777788
Q ss_pred HHHHHHHHHcCCCEE
Q 008655 120 VSVVVKCLRLGAADY 134 (558)
Q Consensus 120 ~e~a~eAL~~GA~DY 134 (558)
.+....+.++|++-+
T Consensus 214 ~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 214 EEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHHTTESEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 888889999998743
No 436
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=29.70 E-value=4e+02 Score=26.15 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PD-LIILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+... ..+ ++++|+..-++ -.+++++++.+. ..+||+.-.+-.+.+.+.++++.||+.++.
T Consensus 147 ~~~~~~~~~~~~--ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEEL--GVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 455666666554 344 55667643322 236888888864 478999888888888899999999999865
No 437
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.64 E-value=1.7e+02 Score=33.04 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+..+.++.|... ..|+|++|..-- ...-++++++|++. +++++|| .-.-.+.+.+..++++||+.+-
T Consensus 227 ~~~~~a~~Lv~a--Gvd~i~~D~a~~~~~~~~~~i~~ik~~--~p~~~v~-agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLEA--GVDVLVVDTAHGHQEKMLEALRAVRAL--DPGVPIV-AGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHHh--CCCEEEEeccCCccHHHHHHHHHHHHH--CCCCeEE-eeccCCHHHHHHHHHcCCCEEE
Confidence 444455555444 589999998543 45667889999875 3555544 2355667888899999998764
No 438
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=29.60 E-value=1.9e+02 Score=27.69 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE---------------EECCHHHHHHHHHh--cCCCceEEEEeCC-CCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT---------------SVRSPRQVIDALNA--EGSDIDLILAEVD-LPMTK 92 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~---------------~Asdg~EALe~L~~--~~~~PDLIILDi~-MP~mD 92 (558)
+..||||+.....+.+.+.+.|+..++.+. ....+- ....+.. ....+|+||+|-- .-+-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCHH
Confidence 468999999999999999999987653322 111222 2232222 1136999999963 32333
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecC
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
.+.+.-.|+.........+|++|+.
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HHhhheeHHHhhhccCeeEEEEeCC
Confidence 4444445544333345688988864
No 439
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=29.56 E-value=3.8e+02 Score=29.28 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=55.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gye-V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
-+|+.+|-++.....++.-++..+.+ +. ...|....+... ...+|+|++|- ++. ...++..+.+.- ..--
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP--fGs-~~~fld~al~~~--~~~g 141 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP--FGT-PAPFVDSAIQAS--AERG 141 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC--CCC-cHHHHHHHHHhc--ccCC
Confidence 47999999999999998888766542 32 334555554432 23699999986 443 235555554322 3335
Q ss_pred EEEEecCCCHH----HHHHHH-HcCCC
Q 008655 111 VIMMSAQDEVS----VVVKCL-RLGAA 132 (558)
Q Consensus 111 VIVLSa~~d~e----~a~eAL-~~GA~ 132 (558)
+|.+|+.+... ....++ +.|+.
T Consensus 142 lL~vTaTD~~~L~G~~~~~~~rkYga~ 168 (374)
T TIGR00308 142 LLLVTATDTSALCGNYPKSCLRKYGAN 168 (374)
T ss_pred EEEEEecccHHhcCCChHHHHHHhCCc
Confidence 78888655533 233444 44654
No 440
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=29.50 E-value=1.7e+02 Score=28.65 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=42.9
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHHH-HHHhcCCCceEEEEeCCCCC-CCH--HHHHHH
Q 008655 34 RILLCDND---------SNSSDAVFSLLV-KCSYQVTSVRSPRQVID-ALNAEGSDIDLILAEVDLPM-TKG--LKMLKY 99 (558)
Q Consensus 34 rVLIVDDd---------~~~r~~L~~lL~-~~gyeV~~Asdg~EALe-~L~~~~~~PDLIILDi~MP~-mDG--lElL~~ 99 (558)
||||+... +.....|..+|+ ..+++|....+....-. .| . .+||||+...... ++. .+.+..
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L--~--~~Dvvv~~~~~~~~l~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL--K--GYDVVVFYNTGGDELTDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH--C--T-SEEEEE-SSCCGS-HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh--c--CCCEEEEECCCCCcCCHHHHHHHHH
Confidence 67888777 257788899998 66899987776332211 22 2 6899999887642 332 223333
Q ss_pred HHhhcCCCCceEEEEe
Q 008655 100 ITRDKELQRIPVIMMS 115 (558)
Q Consensus 100 Ir~~~~~~~iPVIVLS 115 (558)
..+ ...++|.+=
T Consensus 77 ~v~----~Ggglv~lH 88 (217)
T PF06283_consen 77 YVE----NGGGLVGLH 88 (217)
T ss_dssp HHH----TT-EEEEEG
T ss_pred HHH----cCCCEEEEc
Confidence 332 456777774
No 441
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.42 E-value=2.7e+02 Score=28.10 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..++++.+... --.+|++|+.--++ .|++ .|.+. ..++|||.--+-.+.+.+.++.+.|++..+.
T Consensus 144 ~~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNY--VNRFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHH--hCEEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 456777777654 34799999977664 6777 33222 1468999888888889999999999998764
No 442
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=29.34 E-value=3.6e+02 Score=27.09 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=46.3
Q ss_pred HHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHHhhcC--CCCceEEEEe
Q 008655 48 VFSLLVKCSYQVTSVRS---PRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKE--LQRIPVIMMS 115 (558)
Q Consensus 48 L~~lL~~~gyeV~~Asd---g~EALe~L~~~~~~PDLIILDi~MP~mDG-------lElL~~Ir~~~~--~~~iPVIVLS 115 (558)
+...+++.|.++..|-+ ..+.++.+.. ..|.|++=---|+..| ++-++++++... ..++||.+.-
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdG 174 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDG 174 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 33455566766554433 3333333222 3565554233455444 455566654321 1236666544
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008655 116 AQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~K 137 (558)
+ -+.+.+.++.++||+.++.=
T Consensus 175 G-I~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 175 G-VKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred C-CCHHHHHHHHHcCCCEEEEe
Confidence 4 44788889999999988553
No 443
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=29.31 E-value=3.4e+02 Score=25.68 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 44 SSDAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asd------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
+...+...+...|+++....+ ..++++.+... .+|.||+--..+.. ..++..+.. ..+|+|.+...
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~d~ii~~~~~~~~--~~~~~~l~~----~~ip~v~~~~~ 88 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIAR--GVDGIIIAPSDLTA--PTIVKLARK----AGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCCCcc--hhHHHHhhh----cCCCEEEeccC
Confidence 445566667778888764432 24445555444 68988775433332 224566654 56899988654
No 444
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.29 E-value=1.7e+02 Score=35.24 Aligned_cols=74 Identities=11% Similarity=0.243 Sum_probs=50.9
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 78 DIDLILAE-VDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 78 ~PDLIILD-i~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++-|||+| ++|-...+...|.++.+.. -.++-+|++| .+.+.+...|+.-+..|-.+++..++|...|..++..
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEp-P~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEP-PEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCC-CCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 56788887 5655556776666665543 2445555555 3445577788888888988899999988888776643
No 445
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.27 E-value=2.3e+02 Score=27.07 Aligned_cols=74 Identities=8% Similarity=0.064 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceEEEEec--CCCHHHHHHHHHcCCCEEEeCC
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPVIVLSa--~~d~e~a~eAL~~GA~DYL~KP 138 (558)
.+.++++++++... ..+-++.+.+|- -.|++.++.|++.. +++||++... ......+..+.++||+-.+...
T Consensus 10 ~~~~~~~~~~~~l~--~~i~~ieig~~~~~~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 10 LDLEEALELAKKVP--DGVDIIEAGTPLIKSEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred CCHHHHHHHHHHhh--hcCCEEEcCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 35677777776542 124445554442 35788899998753 4677776432 2222346778899998887665
Q ss_pred CC
Q 008655 139 LR 140 (558)
Q Consensus 139 ~~ 140 (558)
..
T Consensus 86 ~~ 87 (202)
T cd04726 86 AA 87 (202)
T ss_pred eC
Confidence 43
No 446
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=29.22 E-value=3e+02 Score=27.17 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCEEEEEC--CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 46 DAVFSLLVKCSYQVTSVR--SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As--dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
+.+...++..||.+..+. +.. ++++.+... ++|.||+-...+.. ..++++.+.+ ..+|||++-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~--~~dgiii~~~~~~~-~~~~~~~~~~----~~iPvV~~~ 86 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQ--GAKGFVICVPDVKL-GPAIVAKAKA----YNMKVVAVD 86 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHc--CCCEEEEccCchhh-hHHHHHHHHh----CCCeEEEec
Confidence 445667777899877543 233 333334333 68987774322111 2345666664 578999874
No 447
>PRK08999 hypothetical protein; Provisional
Probab=29.21 E-value=2.6e+02 Score=28.90 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=50.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCE
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAAD 133 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~D 133 (558)
++.+.+++.+... . .+|.|++.--.+. .-|++.++++.+. ..+||+.+-+- +.+.+.++++.||+.
T Consensus 232 S~h~~~~~~~a~~-~--~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~---~~~Pv~AiGGI-~~~~~~~~~~~g~~g 304 (312)
T PRK08999 232 SCHDAEELARAQR-L--GVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG---VPLPVYALGGL-GPGDLEEAREHGAQG 304 (312)
T ss_pred ecCCHHHHHHHHh-c--CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHhCCCE
Confidence 6678888766543 3 5899987664431 2378888888764 57899999886 667788899999988
Q ss_pred EE
Q 008655 134 YL 135 (558)
Q Consensus 134 YL 135 (558)
+-
T Consensus 305 va 306 (312)
T PRK08999 305 IA 306 (312)
T ss_pred EE
Confidence 73
No 448
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=29.20 E-value=3.8e+02 Score=27.21 Aligned_cols=51 Identities=12% Similarity=0.296 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCC--C----HHHHHHHHHcCCCEEE
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--E----VSVVVKCLRLGAADYL 135 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~--d----~e~a~eAL~~GA~DYL 135 (558)
..|.|-+... .|++.++++.+. ..+||+++-+-. + .+.+.+++++||..+.
T Consensus 169 GADyikt~~~----~~~~~l~~~~~~---~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia 225 (258)
T TIGR01949 169 GADIVKTPYT----GDIDSFRDVVKG---CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVA 225 (258)
T ss_pred CCCEEeccCC----CCHHHHHHHHHh---CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 6899998742 368888888764 568998876654 3 5567788899999763
No 449
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.17 E-value=78 Score=30.59 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=26.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~As 63 (558)
++|||||-...+-..|.++|++.|+++....
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 5899999988888889999999997766544
No 450
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.99 E-value=2.7e+02 Score=26.84 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=47.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHHhhcCCCCceEEEEe--cCCCHHHHHHHHHcCCCEEEe
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKGLKMLKYITRDKELQRIPVIMMS--AQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~--MP~mDGlElL~~Ir~~~~~~~iPVIVLS--a~~d~e~a~eAL~~GA~DYL~ 136 (558)
-+.+.++++++++.. ...+-++.+. |-.-.|++.++.|++.. +...|++=+ .......+.++.++||+-++.
T Consensus 7 D~~~~~~a~~~~~~l--~~~v~~iev~~~l~~~~g~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~v 82 (206)
T TIGR03128 7 DLLDIEEALELAEKV--ADYVDIIEIGTPLIKNEGIEAVKEMKEAF--PDRKVLADLKTMDAGEYEAEQAFAAGADIVTV 82 (206)
T ss_pred cCCCHHHHHHHHHHc--ccCeeEEEeCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEeeccchHHHHHHHHHcCCCEEEE
Confidence 345788888888776 4556677775 43456889999998753 334444211 111122477889999987765
Q ss_pred CCCC
Q 008655 137 KPLR 140 (558)
Q Consensus 137 KP~~ 140 (558)
....
T Consensus 83 h~~~ 86 (206)
T TIGR03128 83 LGVA 86 (206)
T ss_pred eccC
Confidence 5443
No 451
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=28.96 E-value=5.2e+02 Score=26.37 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCC-CceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 94 LKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 94 lElL~~Ir~~~~~~-~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
++++++|++.- + ++|||...+-.+.+.+.+++.+||+.+
T Consensus 230 ~~~v~~i~~~~--~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARL--QLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhc--CCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 56677777642 2 789999999999999999999998765
No 452
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.95 E-value=1.1e+02 Score=32.01 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCC---CCHHHHHHHHHhhcCCCCceEEEEecCCC----HHHHHHHHHcCCCEEEeCC
Q 008655 79 IDLILAEVDLPM---TKGLKMLKYITRDKELQRIPVIMMSAQDE----VSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 79 PDLIILDi~MP~---mDGlElL~~Ir~~~~~~~iPVIVLSa~~d----~e~a~eAL~~GA~DYL~KP 138 (558)
+-+=++-++||. ..--+++..++......++|+|+||+--+ ...+.-|+++||.++|.--
T Consensus 198 ~GadvlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GR 264 (306)
T COG3684 198 SGADVLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGR 264 (306)
T ss_pred CCCceEEeecceeccCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEech
Confidence 344466777886 22457788887766557899999997555 3467778999999998753
No 453
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.85 E-value=3.2e+02 Score=30.44 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHHhhc
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL--KMLKYITRDK 104 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gye-V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl--ElL~~Ir~~~ 104 (558)
...-.+|+=||=++...+..+.-.+..+.. +. .+.+.++....... ...||+||+|- -..|+ ++++.|.+.
T Consensus 312 A~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~-~~~~d~VvvDP---PR~G~~~~~lk~l~~~- 386 (432)
T COG2265 312 AKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE-GYKPDVVVVDP---PRAGADREVLKQLAKL- 386 (432)
T ss_pred cccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc-cCCCCEEEECC---CCCCCCHHHHHHHHhc-
Confidence 445678999999999998888888877754 54 66778777776542 23799999994 33333 578888764
Q ss_pred CCCCceEEEEec
Q 008655 105 ELQRIPVIMMSA 116 (558)
Q Consensus 105 ~~~~iPVIVLSa 116 (558)
.+..||-+|.
T Consensus 387 --~p~~IvYVSC 396 (432)
T COG2265 387 --KPKRIVYVSC 396 (432)
T ss_pred --CCCcEEEEeC
Confidence 4445666665
No 454
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=28.84 E-value=5.6e+02 Score=25.02 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=47.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~i 109 (558)
.-+|||..-...+-..+...|.+.|++|+.+. +.....+..... ...+.++-.++.+.+.+ ++++++.+.. ..+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~i 81 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI--GPAAIAVSLDVTRQDSIDRIVAAAVERF--GGI 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHc--CCC
Confidence 34789999999999999999999999987544 444333333322 22344444444554444 3555565432 445
Q ss_pred eEEEEe
Q 008655 110 PVIMMS 115 (558)
Q Consensus 110 PVIVLS 115 (558)
-+|+..
T Consensus 82 d~li~~ 87 (257)
T PRK07067 82 DILFNN 87 (257)
T ss_pred CEEEEC
Confidence 555554
No 455
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=28.79 E-value=3.1e+02 Score=26.52 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=37.4
Q ss_pred CHHHHH---HHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 41 DSNSSD---AVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 41 d~~~r~---~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
++.... .+.+.+.+.||.+.... +.. +.++.+... .+|.||+.-. ..+ -++++.+.. ..+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~--~~~-~~~~~~l~~----~~ipv 81 (268)
T cd06298 11 NSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAK--QVDGIIFMGG--KIS-EEHREEFKR----SPTPV 81 (268)
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHh--cCCEEEEeCC--CCc-HHHHHHHhc----CCCCE
Confidence 455443 44555667788866432 232 344444444 7898887421 112 245666653 46899
Q ss_pred EEEec
Q 008655 112 IMMSA 116 (558)
Q Consensus 112 IVLSa 116 (558)
|++..
T Consensus 82 V~~~~ 86 (268)
T cd06298 82 VLAGS 86 (268)
T ss_pred EEEcc
Confidence 88854
No 456
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=28.78 E-value=1.3e+02 Score=31.62 Aligned_cols=55 Identities=13% Similarity=0.326 Sum_probs=41.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMT 91 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~m 91 (558)
+|||....-.+-..|.++|. .+++|+. ..+.....+.+.+. +||+||----+...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~--~PDvVIn~AAyt~v 63 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRET--RPDVVINAAAYTAV 63 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhh--CCCEEEECcccccc
Confidence 49999999999999999997 5577663 23566777777765 89999965554443
No 457
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=28.73 E-value=3e+02 Score=26.80 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=38.2
Q ss_pred HHHHHHHHh-CCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVK-CSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~-~gyeV~~Asd---g---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.. .||++..+.. . .+.++.+... .+|-||+....+.. ..++++.+.. ..+|+|++..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~~~~~-~~~~~~~l~~----~~iPvv~~~~ 89 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQ--GVDAIIVVPVDTAA-TAPIVKAANA----AGIPLVYVNR 89 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEecCchhh-hHHHHHHHHH----CCCeEEEecC
Confidence 345566667 7898876542 3 2445554444 78988875433211 1355666654 5789998754
No 458
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.52 E-value=8.1e+02 Score=26.92 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHHhhc--
Q 008655 32 KVRILLCDNDSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD--LPMTKGLKMLKYITRDK-- 104 (558)
Q Consensus 32 ~irVLIVDDd~~~---r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~--MP~mDGlElL~~Ir~~~-- 104 (558)
..+|.+|+-|..- ...|..+....|..|..+.+..+....+... ...|+||+|-- ++ .+... +.++++.-
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~ 282 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA 282 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh
Confidence 4688888877631 1223333344567777777777666656554 37899999973 33 23322 23332211
Q ss_pred CCCC-ceEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 008655 105 ELQR-IPVIMMSAQDEVSVVVKCL----RLGAADYLV 136 (558)
Q Consensus 105 ~~~~-iPVIVLSa~~d~e~a~eAL----~~GA~DYL~ 136 (558)
..++ -.+++|++......+.+.+ ..|...+|.
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 0122 3567888766654444333 245566643
No 459
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.51 E-value=3.8e+02 Score=28.29 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=53.2
Q ss_pred CCcEEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHHHH--HHH-HhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 31 SKVRILLCD--NDSN---SSDAVFSLLVKCSYQVTSVRSPRQVI--DAL-NAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 31 ~~irVLIVD--Dd~~---~r~~L~~lL~~~gyeV~~Asdg~EAL--e~L-~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
+..+|+||- .... ....+.+.|.+.|++|.......+.. ..+ ......+|+||+= |.||. +++.++.
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDGT-~l~~~~~ 76 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL----GGDGT-VLAAARH 76 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE----CCcHH-HHHHHHH
Confidence 344566662 2223 34455666777899877544322211 111 1111247888764 67773 4444444
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR-TNELLNLWTHMWR 153 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~-~eeL~~~L~~llr 153 (558)
.. ...+||+.+.. .|=..||.-... ..+ ...++.+++
T Consensus 77 ~~-~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~ 114 (305)
T PRK02645 77 LA-PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQE 114 (305)
T ss_pred hc-cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHc
Confidence 22 25789887765 245678884421 222 445555544
No 460
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=28.43 E-value=4.2e+02 Score=25.10 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 46 DAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~Asd---g---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
..+...+...|+++..... . .++++.+... .+|.|++....+ +... ++++.. .++|||.+...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iii~~~~~--~~~~-~~~~~~----~~ipvv~~~~~ 87 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSR--RVDGIILAPSRL--DDEL-LEELAA----LGIPVVLVDRP 87 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CcCEEEEecCCc--chHH-HHHHHH----cCCCEEEeccc
Confidence 3444455566887664432 2 3445555444 789888754332 2333 555554 57899988653
No 461
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=28.39 E-value=3.4e+02 Score=27.93 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCEEEE---E------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 45 SDAVFSLLVKCSYQVTS---V------RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~---A------sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
...+...+++.|.+|.. . .+....+..+... .||+|++... ..+...+++.+++..
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~--~~dvvi~~~~--~~~~~~~~~~a~~~g 216 (350)
T cd06366 152 LPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEK--DSRVIVVHFS--PDLARRVFCEAYKLG 216 (350)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcC--CCeEEEEECC--hHHHHHHHHHHHHcC
Confidence 45566666667766541 1 2344555555443 6888887654 336777777777654
No 462
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=28.33 E-value=7.6e+02 Score=26.39 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.|++|+. | -|+.+++.+- ..+|+|++.... +.....-..+.|+- ++ +-+.++|...+..++..
T Consensus 274 aDl~I~k---~--gg~tl~EA~a-----~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~--~~~~~~l~~~i~~ll~~ 338 (391)
T PRK13608 274 SQLMITK---P--GGITISEGLA-----RCIPMIFLNPAPGQELENALYFEEKGFG-KI--ADTPEEAIKIVASLTNG 338 (391)
T ss_pred hhEEEeC---C--chHHHHHHHH-----hCCCEEECCCCCCcchhHHHHHHhCCcE-EE--eCCHHHHHHHHHHHhcC
Confidence 5888763 2 2666666554 568999876422 22333344466664 33 34778888888877643
No 463
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.31 E-value=6.1e+02 Score=26.31 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=58.4
Q ss_pred EEEEEeCCHHHHHHHHHHH---H-hCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSDAVFSLL---V-KCS--YQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL---~-~~g--yeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
.|||.|++-.+.-.+...+ + ..+ ..+ +++.+.+++.+.+.. .+|.|.+|-. ..+.++++.+...
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~-----~~e~l~~~~~~~~- 224 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNM-----SPEELREAVALLK- 224 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCc-----CHHHHHHHHHHcC-
Confidence 6788888755543222222 2 223 234 488999999998864 5899999943 2566666655321
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
.++||+.+ +--+.+.+.+..+.|++.+
T Consensus 225 ~~ipi~Ai-GGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 225 GRVLLEAS-GGITLENIRAYAETGVDYI 251 (268)
T ss_pred CCCcEEEE-CCCCHHHHHHHHHcCCCEE
Confidence 24675544 4456778888999999876
No 464
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=28.23 E-value=2.5e+02 Score=31.80 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=39.0
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 78 DIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 78 ~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
..|+|.+|..-.. ..-++++++|++. ++.++|++ -.-.+.+.+..++++||+.+.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~--~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSN--YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhh--CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 6899999984322 2237889999875 35556554 345567788899999999774
No 465
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=28.22 E-value=77 Score=32.38 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=50.8
Q ss_pred cEEEE-EeCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 008655 33 VRILL-CDNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKM 96 (558)
Q Consensus 33 irVLI-VDDd~~~r~~L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlEl 96 (558)
.+|=. -.-.......|.+.|.+.||+|. .+++...|..++++.+.+|-+|+-|--|++.+|++.
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT 107 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT 107 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC
Confidence 44533 34455667778888999999875 677888899999887789999999999999999753
No 466
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=28.22 E-value=3.7e+02 Score=27.56 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=43.7
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 008655 34 RILLCDND----SNSSDAVFSLLVKC--SYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (558)
Q Consensus 34 rVLIVDDd----~~~r~~L~~lL~~~--gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~I 100 (558)
+|.++..+ ......+...|++. +.+++. ..+....+..+... .||+|++... ..+...+++.+
T Consensus 140 ~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~--~~d~ii~~~~--~~~~~~~~~~~ 215 (346)
T cd06330 140 TWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAA--KPDAIFSSLW--GGDLVTFVRQA 215 (346)
T ss_pred EEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhc--CCCEEEEecc--cccHHHHHHHH
Confidence 45555444 22345566666665 344331 23455555566544 6888887543 35677788888
Q ss_pred HhhcCCCCceEEEEec
Q 008655 101 TRDKELQRIPVIMMSA 116 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa 116 (558)
++....+.+++|....
T Consensus 216 ~~~g~~~~~~~~~~~~ 231 (346)
T cd06330 216 NARGLFDGTTVVLTLT 231 (346)
T ss_pred HhcCcccCceEEeecc
Confidence 7754333456665444
No 467
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.20 E-value=3.1e+02 Score=27.33 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.||.+.... +. .+.++.+... ++|-||+-- +..+. .+.++.++. ..+|||++-.
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiil~~--~~~~~~~~~~~~~~~----~~iPvV~~d~ 89 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIAL--KPDGIVLGG--VDAAELQAELELAQK----AGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEcC--CCHHHHHHHHHHHHH----CCCCEEEecC
Confidence 344555667799877543 22 2456666555 799888731 11121 345555653 4689998854
No 468
>PRK06172 short chain dehydrogenase; Provisional
Probab=28.14 E-value=4.9e+02 Score=25.31 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHH---HHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EA---Le~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~ 105 (558)
...+|||..-...+...+...|.+.|++|+ ...+.... .+.+...+.....+.+|+. ..+.+ ++++.+....
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~i~~~~~~~~~~~- 82 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVT--RDAEVKALVEQTIAAY- 82 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC--CHHHHHHHHHHHHHHh-
Confidence 346899999999999999999998899877 55555433 3333332223344445543 33333 3555565432
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+.+|+..+
T Consensus 83 -g~id~li~~a 92 (253)
T PRK06172 83 -GRLDYAFNNA 92 (253)
T ss_pred -CCCCEEEECC
Confidence 4556666543
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.08 E-value=6e+02 Score=30.64 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=58.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC---CC--HHHHHHHHHhhc
Q 008655 33 VRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM---TK--GLKMLKYITRDK 104 (558)
Q Consensus 33 irVLIVDDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~---mD--GlElL~~Ir~~~ 104 (558)
.+|.||+-|.. ..+.|..+-+..|..+..+.+..+..+.+... ...|+||+|- ++ .| -.+.+..|...
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDT--AGRs~~d~~l~eel~~l~~~- 291 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDT--VGMSQRDRNVSEQIAMLCGV- 291 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeC--CCCCccCHHHHHHHHHHhcc-
Confidence 47888777653 22445555455676676777888877777664 3679999996 33 22 23344444321
Q ss_pred CCCCceEEEEecCCCHHH---HHHHHHc----CCCEEEeC
Q 008655 105 ELQRIPVIMMSAQDEVSV---VVKCLRL----GAADYLVK 137 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~---a~eAL~~----GA~DYL~K 137 (558)
..+.-.++||++....+. +.+.++. +...+|.-
T Consensus 292 ~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 292 GRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEe
Confidence 224445677776554433 3445543 56666443
No 470
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=28.06 E-value=3.3e+02 Score=26.44 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 46 DAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
..+.+.+.+.||.+.... +..+.++.+... .+|-||+--. ..+ ...++.+.. ..+|+|++-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~--~~~-~~~~~~~~~----~~ipvV~~~ 81 (261)
T cd06272 19 TGINQAISKNGYNMNVSITPSLAEAEDLFKEN--RFDGVIIFGE--SAS-DVEYLYKIK----LAIPVVSYG 81 (261)
T ss_pred HHHHHHHHHcCCEEEEEecccHHHHHHHHHHc--CcCEEEEeCC--CCC-hHHHHHHHH----cCCCEEEEc
Confidence 445556667788876433 455666666654 7897776321 122 234455543 468888774
No 471
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.95 E-value=2.7e+02 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+.+.++..||.+.... +.. +.++.+... .+|.||+.-..+ ...+++.+.+ ..+|||++..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgii~~~~~~---~~~~~~~~~~----~~ipvv~~~~ 86 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQ--KVDGIILLATTI---TDEHREAIKK----LNVPVVVVGQ 86 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEeCCCC---CHHHHHHHhc----CCCCEEEEec
Confidence 34455666677899876432 233 334444444 789888753221 2355666654 3578888753
No 472
>PLN02778 3,5-epimerase/4-reductase
Probab=27.89 E-value=2.5e+02 Score=28.93 Aligned_cols=31 Identities=6% Similarity=0.037 Sum_probs=27.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS 61 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~ 61 (558)
..++|||..-.-.+-..|.+.|...|++|..
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 4568999999999999999999999998863
No 473
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.89 E-value=5e+02 Score=27.56 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=58.6
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCCC
Q 008655 34 RILLC--DNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDA----------------LNAEGSDIDLILAEVDLPMTK 92 (558)
Q Consensus 34 rVLIV--DDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~----------------L~~~~~~PDLIILDi~MP~mD 92 (558)
+|.|+ .+.+. ....|.+.|.+.|+++....+..+.+.. .......+|+||+= |.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~i----GGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVL----GGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEE----eCc
Confidence 45555 33333 3455666677789888765433222210 01111136777653 678
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
| .+|+..+... ...+||+-+.. |-..||+ .+..+++...++.+++.
T Consensus 79 G-TlL~aar~~~-~~~iPilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 79 G-TVLSAARQLA-PCGIPLLTINT-------------GHLGFLT-EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred H-HHHHHHHHhc-CCCCcEEEEeC-------------CCCcccc-cCCHHHHHHHHHHHHcC
Confidence 8 5666666532 25789886643 6677887 46778888888887654
No 474
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=27.86 E-value=4.5e+02 Score=25.83 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=46.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHH---HHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCC
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQR 108 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~-Asdg~EA---Le~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~ 108 (558)
+|||..-...+-..+...|.+.|+.|+. ..+.... .+.+... .....+.+|+ -+.+.+ ++++.+.+. +..
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv--~d~~~~~~~~~~~~~~--~g~ 76 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-GEVYAVKADL--SDKDDLKNLVKEAWEL--LGG 76 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-CCceEEEcCC--CCHHHHHHHHHHHHHh--cCC
Confidence 7999999999999999999999998874 4444332 2223222 1233344444 343333 345555543 245
Q ss_pred ceEEEEec
Q 008655 109 IPVIMMSA 116 (558)
Q Consensus 109 iPVIVLSa 116 (558)
+-+|+..+
T Consensus 77 id~li~na 84 (259)
T PRK08340 77 IDALVWNA 84 (259)
T ss_pred CCEEEECC
Confidence 66666553
No 475
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=27.74 E-value=3e+02 Score=27.71 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHHhhcC--CCCceEEEEecCCCHHHH
Q 008655 51 LLVKCSYQV--TSVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKE--LQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 51 lL~~~gyeV--~~Asdg~EALe~L~~~~~~PDLIILDi---~MP~mDGlElL~~Ir~~~~--~~~iPVIVLSa~~d~e~a 123 (558)
.|...|+.| +.+-+..+|+...... .+.|-.=+ .--+.||+++++.+.+... ...+. |+..+..+...+
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v 171 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHV 171 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHH
Confidence 455556543 3455667776666542 44332211 1124689999888876421 13455 556677888899
Q ss_pred HHHHHcCCCEEEeCC
Q 008655 124 VKCLRLGAADYLVKP 138 (558)
Q Consensus 124 ~eAL~~GA~DYL~KP 138 (558)
.+++.+|++-+-.-|
T Consensus 172 ~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 172 LEAALIGADIATMPL 186 (213)
T ss_pred HHHHHcCCCEEEcCH
Confidence 999999998876544
No 476
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=27.73 E-value=4.1e+02 Score=28.67 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=53.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHHhhcCCCC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQR 108 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gy-eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG--lElL~~Ir~~~~~~~ 108 (558)
.+|+-||-++...+..+.-+...+. .+. ...+..+.+... . ..+|+|++|- | -.| -++++.|... .+
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~--~~~D~vi~DP--P-r~G~~~~~l~~l~~~---~p 326 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-M--SAPELVLVNP--P-RRGIGKELCDYLSQM---AP 326 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-C--CCCCEEEECC--C-CCCCcHHHHHHHHhc---CC
Confidence 5899999999999888887776665 333 556776655332 1 2589999993 3 334 3667777653 22
Q ss_pred ceEEEEecCCCHHHHHHHHHc
Q 008655 109 IPVIMMSAQDEVSVVVKCLRL 129 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~ 129 (558)
--||.++ ..-...+..+..+
T Consensus 327 ~~ivyvs-c~p~TlaRDl~~L 346 (374)
T TIGR02085 327 KFILYSS-CNAQTMAKDIAEL 346 (374)
T ss_pred CeEEEEE-eCHHHHHHHHHHh
Confidence 2345444 3433444444443
No 477
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.72 E-value=4.1e+02 Score=23.42 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=13.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE
Q 008655 39 DNDSNSSDAVFSLLVKCSYQVTS 61 (558)
Q Consensus 39 DDd~~~r~~L~~lL~~~gyeV~~ 61 (558)
|.+......+...|...||.+..
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~A 30 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLFA 30 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEEE
Confidence 33444445566666677888763
No 478
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=27.72 E-value=6.6e+02 Score=27.03 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEeCCCC-----------------------CCCHHHHH
Q 008655 46 DAVFSLLVKCSYQVT--SV---RSPRQVIDALNAEGSDIDLILAEVDLP-----------------------MTKGLKML 97 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~A---sdg~EALe~L~~~~~~PDLIILDi~MP-----------------------~mDGlElL 97 (558)
+.|..+....++-|+ .. .+.++|..+.. . .+|.|.+.-.=. +....+.+
T Consensus 176 e~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~-~--Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 176 DNIAEIVSALPVPVIVKEVGFGISKETAKRLAD-A--GVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH-c--CCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHH
Confidence 556665554443333 22 45555554443 3 588888743210 12233455
Q ss_pred HHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008655 98 KYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (558)
Q Consensus 98 ~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~ 139 (558)
..+++.. ..+|||...+-.+...+.+++.+||+.+ +-.|+
T Consensus 253 ~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~ 293 (352)
T PRK05437 253 LEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPF 293 (352)
T ss_pred HHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 5565531 4789999889999999999999999888 55554
No 479
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=27.71 E-value=5.6e+02 Score=24.71 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCH-HHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RSP-RQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~A-sdg-~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~ 107 (558)
+.-+|||..-...+-..+...|.+.|+.|+.. .+. .++.+.+... ...+.+..+++-..+.+ .+++++.... .
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEEF--G 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHHc--C
Confidence 44579999999999999999999999988744 332 2334444433 22344444444444443 3555555432 3
Q ss_pred CceEEEEec
Q 008655 108 RIPVIMMSA 116 (558)
Q Consensus 108 ~iPVIVLSa 116 (558)
.+-+|+..+
T Consensus 80 ~~d~li~~a 88 (248)
T TIGR01832 80 HIDILVNNA 88 (248)
T ss_pred CCCEEEECC
Confidence 455555543
No 480
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=27.62 E-value=4.9e+02 Score=24.93 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=46.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHH---HHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQ---VIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~E---ALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~ 106 (558)
..+|||..-...+...|...|.+.|+.|+ ...+... ..+.+... ..++.+...++-+.+.+ ++++.+....
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-- 81 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVEDF-- 81 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh--
Confidence 34799999999998989888888899887 4555432 33333332 23344444444444333 3344444322
Q ss_pred CCceEEEEec
Q 008655 107 QRIPVIMMSA 116 (558)
Q Consensus 107 ~~iPVIVLSa 116 (558)
..+-+|+..+
T Consensus 82 ~~~d~vi~~a 91 (251)
T PRK12826 82 GRLDILVANA 91 (251)
T ss_pred CCCCEEEECC
Confidence 3455555554
No 481
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=27.59 E-value=1.9e+02 Score=27.13 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCHHH---------HHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEE
Q 008655 31 SKVRILLCDNDSNS---------SDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLIL 83 (558)
Q Consensus 31 ~~irVLIVDDd~~~---------r~~L~~lL~~~-gyeV~~Asdg~EALe~L~~~~~~PDLII 83 (558)
..+.|.|||.|... .+.|.+.|... .+.+.. .+..+|.+.+... +.+.+|
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g--~~~~~i 101 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADG--KYYMVI 101 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcC--cEEEEE
Confidence 57899999988875 45566666554 355443 4899999999876 667665
No 482
>PRK14099 glycogen synthase; Provisional
Probab=27.59 E-value=5.1e+02 Score=28.95 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCC-HHHHHHHH----HcC-CCEEEeCCCCHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDE-VSVVVKCL----RLG-AADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d-~e~a~eAL----~~G-A~DYL~KP~~~eeL~~~L~~l 151 (558)
.|+.++--. -+.-|+..++.+. ..+|+|+ +.... .+.+...- ..| ..+|+..|.+.++|..++.++
T Consensus 370 aDifv~PS~-~E~fGl~~lEAma-----~G~ppVv-s~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a 441 (485)
T PRK14099 370 ADALLVPSR-FEPCGLTQLCALR-----YGAVPVV-ARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKT 441 (485)
T ss_pred CCEEEECCc-cCCCcHHHHHHHH-----CCCCcEE-eCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHH
Confidence 576666322 3445677776665 3444444 43222 22222110 012 578999999999999988763
No 483
>PRK15320 transcriptional activator SprB; Provisional
Probab=27.58 E-value=1.5e+02 Score=30.07 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=64.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKC--SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~--gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+|+|-.|.=...-.+..++++. +..|.+|.+....+..+.. .||.+++=.--|...-+ +.-.+++. .++-||
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh~~-lf~~l~~~--l~~~~v 76 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEHVY-LFHALLTR--LQNRKV 76 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhHHH-HHHHHHHH--cCCCce
Confidence 6888899988899999999865 5678888888888888865 58876654444543332 33334432 266799
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
++++.+--.....-.--.|+.||+.|
T Consensus 77 ~vv~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 77 LVVADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred EEEecceeehhhhhhhhhcchhHHHH
Confidence 99987533222222334577777765
No 484
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=27.56 E-value=2.3e+02 Score=29.06 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHH--
Q 008655 44 SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVS-- 121 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e-- 121 (558)
.-..|.+..++.|....+..-..++++.|.+. ++-++=|.=.+.+-+.+|+++.+ ...|||+=|+-...+
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~stl~EI 128 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGMSTLEEI 128 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT--HHHH
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH----hCCcEEEECCCCCHHHH
Confidence 34456777778898877656667788888654 34455555556788999999986 467999888766644
Q ss_pred -HHHHHH-HcCCCEE
Q 008655 122 -VVVKCL-RLGAADY 134 (558)
Q Consensus 122 -~a~eAL-~~GA~DY 134 (558)
.+++.+ +.|..++
T Consensus 129 ~~Av~~~~~~~~~~l 143 (241)
T PF03102_consen 129 ERAVEVLREAGNEDL 143 (241)
T ss_dssp HHHHHHHHHHCT--E
T ss_pred HHHHHHHHhcCCCCE
Confidence 455555 6677666
No 485
>PRK08862 short chain dehydrogenase; Provisional
Probab=27.56 E-value=5.3e+02 Score=25.26 Aligned_cols=84 Identities=8% Similarity=0.055 Sum_probs=51.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHH----HHHhcCCCceEEEEeCCCCCCCHHH-HHHHHHhh
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVID----ALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRD 103 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe----~L~~~~~~PDLIILDi~MP~mDGlE-lL~~Ir~~ 103 (558)
++..-.+||.--...+-..+...|.+.|+.|+.+..-.+.++ .+... ..+++...+++.+.+.++ +++.+.+.
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 344458999999999999999999999999875543333333 23222 235555555555555554 56666553
Q ss_pred cCCC-CceEEEEec
Q 008655 104 KELQ-RIPVIMMSA 116 (558)
Q Consensus 104 ~~~~-~iPVIVLSa 116 (558)
. . .+-+++..+
T Consensus 80 ~--g~~iD~li~na 91 (227)
T PRK08862 80 F--NRAPDVLVNNW 91 (227)
T ss_pred h--CCCCCEEEECC
Confidence 2 3 455666554
No 486
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.52 E-value=80 Score=33.39 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=15.8
Q ss_pred cCcHHHHHHHHHHHHHhhhcc
Q 008655 469 MNKVDRREAALIKFRQKRKER 489 (558)
Q Consensus 469 ~~~~~~r~~~~~r~~~k~~~r 489 (558)
..+.++|..+-.|||+|||.-
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae 249 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAE 249 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 344567778889999998853
No 487
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=27.40 E-value=3.5e+02 Score=28.27 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=48.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHHhhcCCCC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG--LKMLKYITRDKELQR 108 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gye-V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG--lElL~~Ir~~~~~~~ 108 (558)
.+|+-||-++...+...+-+...+.. +. ...|..+.+... ...+|+|++| |...| -++++.|.... .
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~---~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~---~ 266 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ---GEVPDLVLVN---PPRRGIGKELCDYLSQMA---P 266 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc---CCCCeEEEEC---CCCCCccHHHHHHHHHcC---C
Confidence 58999999999998888877776653 33 556666554321 1268999999 33344 36667776532 2
Q ss_pred ceEEEEec
Q 008655 109 IPVIMMSA 116 (558)
Q Consensus 109 iPVIVLSa 116 (558)
--||.+|.
T Consensus 267 ~~ivyvsc 274 (315)
T PRK03522 267 RFILYSSC 274 (315)
T ss_pred CeEEEEEC
Confidence 24555554
No 488
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=27.25 E-value=2.9e+02 Score=30.31 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHHHHhCC
Q 008655 47 AVFSLLVKCS 56 (558)
Q Consensus 47 ~L~~lL~~~g 56 (558)
.+..++...+
T Consensus 176 al~~l~~~~~ 185 (472)
T cd06374 176 AMLDIVKRYN 185 (472)
T ss_pred HHHHHHHHCC
Confidence 3333443333
No 489
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.21 E-value=5e+02 Score=27.32 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=57.3
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHH-----H--HHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 34 RILLC--DNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVID-----A--LNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 34 rVLIV--DDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe-----~--L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
+|+|| .+.+. ..+.+.+.|.+.++++.......+.+. . .......+|+||+= |.||. +|+.++
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDGt-~l~~~~ 80 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVV----GGDGS-LLGAAR 80 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEE----eCcHH-HHHHHH
Confidence 57776 33333 344556667777888776543222111 0 01111147777653 66773 444444
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
... ...+||+-+.. |=..||. .+..+++...|..+++.
T Consensus 81 ~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 81 ALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred Hhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcC
Confidence 321 25788886654 5566774 67888998888888753
No 490
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.20 E-value=4.6e+02 Score=28.59 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CC--HHHHHHHHHhhc----------C
Q 008655 47 AVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TK--GLKMLKYITRDK----------E 105 (558)
Q Consensus 47 ~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mD--GlElL~~Ir~~~----------~ 105 (558)
.+.++++..+..|+ .+.+.+.|.+++.. ..|.|++... |+ .. |+..+..|.... .
T Consensus 178 ~i~~~ik~~~ipVIaG~V~t~e~A~~l~~a---GAD~V~VG~G-~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~ 253 (368)
T PRK08649 178 NLKEFIYELDVPVIVGGCVTYTTALHLMRT---GAAGVLVGIG-PGAACTSRGVLGIGVPMATAIADVAAARRDYLDETG 253 (368)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHc---CCCEEEECCC-CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhc
Confidence 35666666666655 36788889888863 5899987643 22 11 233332222110 0
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
...+|||.=.+-.+...+.+||.+||+....
T Consensus 254 ~~~vpVIAdGGI~~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 254 GRYVHVIADGGIGTSGDIAKAIACGADAVML 284 (368)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCeecc
Confidence 1258999888889999999999999999864
No 491
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=27.15 E-value=2.8e+02 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=24.3
Q ss_pred CceEEEEeCCCCCCC-------------------------HHHHHHHHHhhcCCCCceEEEEec
Q 008655 78 DIDLILAEVDLPMTK-------------------------GLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 78 ~PDLIILDi~MP~mD-------------------------GlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+||+|++.+..-+.. =.+++++|++.. +.++||+++-
T Consensus 68 ~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~--p~~~Ivv~~~ 129 (204)
T cd04506 68 KADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLN--PDAPIFLVGL 129 (204)
T ss_pred cCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCeEEEEec
Confidence 799999988665531 134566676543 5678887764
No 492
>PRK07035 short chain dehydrogenase; Provisional
Probab=27.09 E-value=5.9e+02 Score=24.71 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=52.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHH-HHHHHHhhcC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLK-MLKYITRDKE 105 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~-~~~PDLIILDi~MP~mDGlE-lL~~Ir~~~~ 105 (558)
.++.-.|||..-...+-..+...|.+.|++|+ ...+...+.+..... .....+.++.+++-..+.++ +++++.+..
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~- 83 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH- 83 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 34455799999999999999999999999887 444444332222211 01234455555555555543 566666532
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+-+|+..+
T Consensus 84 -~~id~li~~a 93 (252)
T PRK07035 84 -GRLDILVNNA 93 (252)
T ss_pred -CCCCEEEECC
Confidence 4566666554
No 493
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=27.05 E-value=6.5e+02 Score=26.67 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=35.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.|++++. ++ |..+++.+- ..+|+|+...-.. ...+....+.|+- ++ +.+.++|...+..++..
T Consensus 283 aDv~V~~---~g--~~ti~EAma-----~g~PvI~~~~~pgqe~gn~~~i~~~g~g-~~--~~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 283 CDCIITK---AG--PGTIAEALI-----RGLPIILNGYIPGQEEGNVPYVVDNGFG-AF--SESPKEIARIVAEWFGD 347 (382)
T ss_pred CCEEEEC---CC--cchHHHHHH-----cCCCEEEecCCCccchhhHHHHHhCCce-ee--cCCHHHHHHHHHHHHcC
Confidence 5877763 22 445555543 6789998763111 1122233456664 33 36788888888887653
No 494
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.03 E-value=3.2e+02 Score=26.55 Aligned_cols=61 Identities=16% Similarity=0.337 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 46 DAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
..+.+.+.+.||.+..+. +. .+.++.+... .+|-||+.-. ..+. +.++++.. ..+|||++-
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~--~~~~-~~~~~~~~----~~iPvv~~~ 85 (265)
T cd06285 19 EGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDR--RVDGLILGDA--RSDD-HFLDELTR----RGVPFVLVL 85 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecC--CCCh-HHHHHHHH----cCCCEEEEc
Confidence 455666667788876433 22 2445555555 7897776432 2222 34666654 467888764
No 495
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=26.99 E-value=5.2e+02 Score=29.52 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=65.0
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHh---cCCCceEEEEeCC----CCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNA---EGSDIDLILAEVD----LPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~---~~~~PDLIILDi~----MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+...|+..|+.+. .+..+...+..+.. . +||.|=+|-. ++. + -.+++.|.......++. ++..+
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l--~~d~iKid~~~~~~~~~-~-~~~~~~i~~~a~~l~~~-viaeg 616 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSL--PIHMIKLDKSFVKNLPE-D-DAIARIISCVSDVLKVR-VMAEG 616 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCC--CCcEEEECHHHHhcccC-C-HHHHHHHHHHHHHcCCe-EEEec
Confidence 445566778898865 57788888888876 5 7999999952 322 2 22333333322123444 34567
Q ss_pred CCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHH
Q 008655 117 QDEVSVVVKCLRLGAAD----YLVKPLRTNELLNLW 148 (558)
Q Consensus 117 ~~d~e~a~eAL~~GA~D----YL~KP~~~eeL~~~L 148 (558)
-++.+....+.++|++- |+.||....++...+
T Consensus 617 VEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 617 VETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred CCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 77788888888999853 489999988876543
No 496
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=26.95 E-value=4.9e+02 Score=24.08 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=32.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.++.+.++... -..++++.++. .+++|.+-|- .+.+....+++.|++.+++
T Consensus 137 ~~~~v~~~~~~---~~~~~i~~~~~----~g~~v~~wtv-n~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 137 GADAVNPHYKL---LTPELVRAAHA----AGLKVYVWTV-NDPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCeEEccChhh---CCHHHHHHHHH----cCCEEEEEcC-CCHHHHHHHHHCCCCEEec
Confidence 34555444432 13466677765 4567776665 4567778888999888764
No 497
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=26.93 E-value=5.9e+02 Score=24.67 Aligned_cols=62 Identities=16% Similarity=0.035 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
.|++++-... +.-|..+++.+. ..+|||+. ... ...+.+..|...|+.++-+.+.+...+..
T Consensus 264 ~d~~i~ps~~-e~~~~~~~Ea~~-----~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~ 325 (353)
T cd03811 264 ADLFVLSSRY-EGFPNVLLEAMA-----LGTPVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALA 325 (353)
T ss_pred CCEEEeCccc-CCCCcHHHHHHH-----hCCCEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHH
Confidence 4665553332 223556666665 46787753 222 33456778889999999988888444433
No 498
>PLN02823 spermine synthase
Probab=26.92 E-value=2.5e+02 Score=30.23 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=39.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-----SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP 89 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-----gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP 89 (558)
..+|.+||=|+.+.+..++.+... +-+|. ...|+...++.. ...+||||+|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---DEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---CCCccEEEecCCCc
Confidence 357999999999999998887532 12343 557777777542 23799999997544
No 499
>PRK15482 transcriptional regulator MurR; Provisional
Probab=26.87 E-value=4e+02 Score=27.24 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=52.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~~~~~~~i 109 (558)
.+-|+=+..+..+...+...|...|+.|....+.......+... .+-||+|. +..++. +-+++++..++ ..+
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~-~~~Dv~i~-iS~sg~t~~~~~~~~~a~~----~g~ 210 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL-KKGDVQIA-ISYSGSKKEIVLCAEAARK----QGA 210 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH----CCC
Confidence 34455556677777778888888888887666554443333322 12355443 444553 45667777765 568
Q ss_pred eEEEEecCCCHHH
Q 008655 110 PVIMMSAQDEVSV 122 (558)
Q Consensus 110 PVIVLSa~~d~e~ 122 (558)
+||.+|.......
T Consensus 211 ~iI~IT~~~~s~l 223 (285)
T PRK15482 211 TVIAITSLADSPL 223 (285)
T ss_pred EEEEEeCCCCCch
Confidence 9999998776554
No 500
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=26.83 E-value=3.5e+02 Score=26.10 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 45 SDAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asd------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
...+.+.+.+.||++..... ..++++.+... .+|.||+.-..+. . .+++.+. ..+|||++.
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~--~-~~~~~~~-----~~ipvv~~~ 84 (267)
T cd06284 18 LKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRK--QADGIILLDGSLP--P-TALTALA-----KLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHc--CCCEEEEecCCCC--H-HHHHHHh-----cCCCEEEEe
Confidence 35566667778998764442 22445555544 7897777432222 1 1333332 467999875
Done!