Query 008655
Match_columns 558
No_of_seqs 427 out of 2379
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.4E-25 4.7E-30 204.6 16.6 121 32-154 12-133 (134)
2 1a2o_A CHEB methylesterase; ba 99.9 4.5E-23 1.5E-27 215.1 18.5 183 30-260 1-196 (349)
3 3gl9_A Response regulator; bet 99.9 6.8E-22 2.3E-26 171.8 17.3 119 33-153 3-121 (122)
4 3t6k_A Response regulator rece 99.9 7E-22 2.4E-26 174.9 17.5 125 30-156 2-126 (136)
5 2lpm_A Two-component response 99.9 8.5E-24 2.9E-28 190.4 -0.2 117 27-152 3-120 (123)
6 3f6p_A Transcriptional regulat 99.9 5.8E-21 2E-25 165.1 16.2 116 33-153 3-118 (120)
7 3crn_A Response regulator rece 99.9 1.9E-20 6.6E-25 164.2 19.5 125 31-159 2-126 (132)
8 3h1g_A Chemotaxis protein CHEY 99.9 1.9E-20 6.5E-25 163.6 17.2 122 31-153 4-126 (129)
9 3rqi_A Response regulator prot 99.9 4.7E-21 1.6E-25 178.9 13.8 125 29-157 4-128 (184)
10 3jte_A Response regulator rece 99.8 5.6E-20 1.9E-24 162.3 19.2 128 30-159 1-128 (143)
11 3kht_A Response regulator; PSI 99.8 2.4E-20 8.3E-25 165.2 16.8 127 28-156 1-130 (144)
12 1dbw_A Transcriptional regulat 99.8 4.3E-20 1.5E-24 160.0 17.7 120 30-153 1-120 (126)
13 2r25_B Osmosensing histidine p 99.8 2.8E-20 9.7E-25 163.9 16.8 119 32-153 2-126 (133)
14 3gt7_A Sensor protein; structu 99.8 4.1E-20 1.4E-24 166.9 18.1 125 30-156 5-129 (154)
15 3m6m_D Sensory/regulatory prot 99.8 3.5E-20 1.2E-24 165.6 17.4 123 30-154 12-136 (143)
16 1srr_A SPO0F, sporulation resp 99.8 5.5E-20 1.9E-24 158.5 17.0 118 31-152 2-119 (124)
17 2pl1_A Transcriptional regulat 99.8 1.2E-19 4.1E-24 155.1 18.8 118 33-154 1-118 (121)
18 1xhf_A DYE resistance, aerobic 99.8 1.5E-19 5.1E-24 155.3 18.6 120 30-154 1-120 (123)
19 3hv2_A Response regulator/HD d 99.8 1.9E-19 6.3E-24 161.7 20.0 124 31-158 13-137 (153)
20 1jbe_A Chemotaxis protein CHEY 99.8 9.9E-20 3.4E-24 157.5 17.4 122 31-154 3-125 (128)
21 3i42_A Response regulator rece 99.8 2.5E-20 8.6E-25 161.4 13.5 122 30-154 1-122 (127)
22 3b2n_A Uncharacterized protein 99.8 7E-20 2.4E-24 160.7 16.5 122 31-156 2-125 (133)
23 3cfy_A Putative LUXO repressor 99.8 1.3E-19 4.4E-24 160.4 17.7 121 33-157 5-125 (137)
24 3h5i_A Response regulator/sens 99.8 3.7E-20 1.3E-24 163.9 13.7 127 28-158 1-128 (140)
25 3kto_A Response regulator rece 99.8 3.5E-20 1.2E-24 163.3 13.5 122 31-156 5-128 (136)
26 1i3c_A Response regulator RCP1 99.8 2E-19 6.7E-24 161.2 18.5 124 31-154 7-137 (149)
27 3grc_A Sensor protein, kinase; 99.8 5.2E-20 1.8E-24 161.9 14.4 125 31-157 5-130 (140)
28 1zgz_A Torcad operon transcrip 99.8 2.9E-19 1E-23 153.2 18.6 118 32-154 2-119 (122)
29 1tmy_A CHEY protein, TMY; chem 99.8 1.4E-19 4.8E-24 154.8 16.5 117 32-152 2-119 (120)
30 3hdg_A Uncharacterized protein 99.8 1.2E-19 4.1E-24 159.1 16.3 123 31-157 6-128 (137)
31 2a9o_A Response regulator; ess 99.8 1.9E-19 6.5E-24 153.3 17.1 116 33-153 2-117 (120)
32 3heb_A Response regulator rece 99.8 2.2E-19 7.5E-24 160.8 18.2 125 31-155 3-136 (152)
33 3r0j_A Possible two component 99.8 1.7E-19 5.9E-24 176.1 18.9 122 30-155 21-142 (250)
34 3eod_A Protein HNR; response r 99.8 1.1E-19 3.8E-24 157.9 15.4 122 30-155 5-127 (130)
35 3dzd_A Transcriptional regulat 99.8 2.8E-20 9.7E-25 195.1 13.7 119 34-156 2-120 (368)
36 4e7p_A Response regulator; DNA 99.8 1.7E-19 5.7E-24 161.5 16.7 124 28-155 16-141 (150)
37 3lua_A Response regulator rece 99.8 3.9E-20 1.3E-24 163.1 12.3 124 31-156 3-129 (140)
38 3nhm_A Response regulator; pro 99.8 1.7E-19 5.8E-24 157.0 16.2 122 31-156 3-124 (133)
39 1mb3_A Cell division response 99.8 1.8E-19 6.1E-24 154.7 15.9 119 33-153 2-120 (124)
40 3n53_A Response regulator rece 99.8 5.7E-20 2E-24 162.0 13.1 127 30-159 1-127 (140)
41 1k66_A Phytochrome response re 99.8 2.5E-19 8.5E-24 157.8 17.1 128 28-155 2-139 (149)
42 3luf_A Two-component system re 99.8 1.9E-19 6.4E-24 178.7 18.2 126 31-157 123-248 (259)
43 3c3m_A Response regulator rece 99.8 2.8E-19 9.4E-24 157.9 16.7 122 31-154 2-123 (138)
44 3hdv_A Response regulator; PSI 99.8 3.8E-19 1.3E-23 155.7 17.4 123 31-155 6-128 (136)
45 1p6q_A CHEY2; chemotaxis, sign 99.8 1.5E-19 5E-24 156.6 14.6 120 32-153 6-126 (129)
46 2qzj_A Two-component response 99.8 3.4E-19 1.2E-23 157.6 17.1 119 32-155 4-122 (136)
47 3cnb_A DNA-binding response re 99.8 5.1E-19 1.8E-23 155.1 17.8 123 31-155 7-131 (143)
48 2zay_A Response regulator rece 99.8 2.6E-19 8.7E-24 158.8 16.0 125 30-156 6-130 (147)
49 1k68_A Phytochrome response re 99.8 6E-19 2.1E-23 153.4 17.7 125 32-156 2-133 (140)
50 3ilh_A Two component response 99.8 6.8E-19 2.3E-23 154.8 18.0 122 31-154 8-139 (146)
51 1zh2_A KDP operon transcriptio 99.8 4.5E-19 1.6E-23 151.2 16.3 117 33-154 2-118 (121)
52 3cg4_A Response regulator rece 99.8 1.3E-19 4.6E-24 159.3 13.3 127 29-157 4-130 (142)
53 1dz3_A Stage 0 sporulation pro 99.8 4.2E-19 1.4E-23 154.5 16.1 120 32-154 2-123 (130)
54 3kcn_A Adenylate cyclase homol 99.8 9.2E-19 3.2E-23 156.8 18.5 125 31-159 3-128 (151)
55 3hzh_A Chemotaxis response reg 99.8 2.9E-19 9.9E-24 161.7 15.2 122 29-152 33-155 (157)
56 3f6c_A Positive transcription 99.8 1.4E-19 4.9E-24 157.6 12.6 120 32-155 1-121 (134)
57 2rjn_A Response regulator rece 99.8 1.2E-18 4E-23 156.4 18.7 125 30-158 5-130 (154)
58 1mvo_A PHOP response regulator 99.8 5.4E-19 1.9E-23 154.3 16.1 119 32-154 3-121 (136)
59 2qr3_A Two-component system re 99.8 6.7E-19 2.3E-23 154.2 16.6 122 30-155 1-127 (140)
60 1ny5_A Transcriptional regulat 99.8 4.2E-19 1.4E-23 187.1 18.0 161 33-197 1-174 (387)
61 3snk_A Response regulator CHEY 99.8 3.4E-20 1.2E-24 162.8 7.9 120 31-154 13-133 (135)
62 2jba_A Phosphate regulon trans 99.8 1E-19 3.5E-24 156.8 10.5 120 32-153 2-121 (127)
63 3lte_A Response regulator; str 99.8 1.3E-18 4.3E-23 151.3 17.2 121 31-154 5-125 (132)
64 3cz5_A Two-component response 99.8 6.4E-19 2.2E-23 157.9 15.8 124 28-155 1-126 (153)
65 3mm4_A Histidine kinase homolo 99.8 5.7E-19 2E-23 168.6 16.3 127 29-157 58-199 (206)
66 3q9s_A DNA-binding response re 99.8 4.4E-19 1.5E-23 174.4 15.9 121 29-154 34-154 (249)
67 4dad_A Putative pilus assembly 99.8 3.1E-19 1E-23 158.5 13.1 121 30-154 18-141 (146)
68 3cg0_A Response regulator rece 99.8 1.7E-18 5.6E-23 151.7 17.6 123 30-157 7-131 (140)
69 1yio_A Response regulatory pro 99.8 4.3E-19 1.5E-23 167.2 14.5 122 31-156 3-124 (208)
70 3eq2_A Probable two-component 99.8 3.2E-19 1.1E-23 186.1 14.9 123 28-154 1-124 (394)
71 3n0r_A Response regulator; sig 99.8 1.1E-19 3.8E-24 184.0 10.8 117 32-155 160-278 (286)
72 2qxy_A Response regulator; reg 99.8 9.1E-19 3.1E-23 154.3 15.4 120 32-156 4-123 (142)
73 2gkg_A Response regulator homo 99.8 1E-18 3.6E-23 149.4 14.8 121 30-153 3-124 (127)
74 3eul_A Possible nitrate/nitrit 99.8 1.6E-18 5.6E-23 155.1 16.6 123 31-157 14-138 (152)
75 1kgs_A DRRD, DNA binding respo 99.8 1.2E-18 3.9E-23 165.9 16.5 120 32-155 2-121 (225)
76 1a04_A Nitrate/nitrite respons 99.8 1.9E-18 6.5E-23 163.9 17.9 120 31-154 4-125 (215)
77 2ayx_A Sensor kinase protein R 99.8 1.9E-18 6.7E-23 170.5 18.5 123 30-156 127-249 (254)
78 3a10_A Response regulator; pho 99.8 6.5E-19 2.2E-23 149.8 12.7 114 33-152 2-115 (116)
79 3cu5_A Two component transcrip 99.8 7.6E-19 2.6E-23 156.2 13.4 121 32-156 2-125 (141)
80 1s8n_A Putative antiterminator 99.8 1.5E-18 5.1E-23 163.7 16.1 120 32-156 13-133 (205)
81 1dcf_A ETR1 protein; beta-alph 99.8 2.2E-18 7.7E-23 151.1 16.0 120 31-153 6-128 (136)
82 2jk1_A HUPR, hydrogenase trans 99.8 5.2E-18 1.8E-22 149.6 18.1 119 33-156 2-121 (139)
83 2qvg_A Two component response 99.8 2.2E-18 7.5E-23 151.7 15.5 120 31-150 6-131 (143)
84 1qkk_A DCTD, C4-dicarboxylate 99.8 3.2E-18 1.1E-22 153.7 16.8 122 32-157 3-124 (155)
85 1w25_A Stalked-cell differenti 99.8 3.5E-18 1.2E-22 181.1 18.9 123 33-157 2-124 (459)
86 3t8y_A CHEB, chemotaxis respon 99.8 3.4E-18 1.2E-22 156.3 16.3 121 18-143 11-135 (164)
87 1ys7_A Transcriptional regulat 99.8 1.4E-18 4.7E-23 166.2 14.1 122 30-155 5-126 (233)
88 2qv0_A Protein MRKE; structura 99.8 1E-17 3.4E-22 147.8 17.1 123 29-157 6-130 (143)
89 2gwr_A DNA-binding response re 99.8 2.1E-18 7.2E-23 166.9 13.8 121 28-153 1-121 (238)
90 2rdm_A Response regulator rece 99.8 9.5E-18 3.3E-22 145.4 16.3 122 28-154 1-123 (132)
91 2qsj_A DNA-binding response re 99.8 1.9E-18 6.5E-23 154.7 12.0 122 30-155 1-125 (154)
92 3eqz_A Response regulator; str 99.8 2.4E-18 8.2E-23 149.4 11.1 120 30-154 1-125 (135)
93 2oqr_A Sensory transduction pr 99.8 4.8E-18 1.7E-22 162.4 13.8 118 32-154 4-121 (230)
94 3bre_A Probable two-component 99.8 7.6E-18 2.6E-22 172.0 15.4 119 32-152 18-137 (358)
95 1p2f_A Response regulator; DRR 99.7 1.4E-17 4.9E-22 158.4 15.5 116 32-154 2-117 (220)
96 2pln_A HP1043, response regula 99.7 4.2E-17 1.4E-21 143.1 16.7 116 30-154 16-133 (137)
97 3c3w_A Two component transcrip 99.7 3.7E-18 1.3E-22 164.4 9.1 121 32-156 1-123 (225)
98 3kyj_B CHEY6 protein, putative 99.7 1.6E-17 5.4E-22 147.5 12.4 116 31-150 12-131 (145)
99 3c97_A Signal transduction his 99.7 1.7E-17 5.9E-22 146.4 12.5 120 32-156 10-132 (140)
100 3sy8_A ROCR; TIM barrel phosph 99.7 1E-17 3.5E-22 176.1 12.9 122 30-154 1-128 (400)
101 2j48_A Two-component sensor ki 99.7 2.6E-17 8.9E-22 138.1 12.4 115 33-152 2-116 (119)
102 3klo_A Transcriptional regulat 99.7 4.2E-18 1.4E-22 163.5 7.8 121 31-155 6-130 (225)
103 1dc7_A NTRC, nitrogen regulati 99.7 1.8E-19 6.2E-24 153.9 -1.7 121 30-154 1-121 (124)
104 1qo0_D AMIR; binding protein, 99.7 3.5E-17 1.2E-21 153.2 11.6 117 30-155 10-126 (196)
105 2b4a_A BH3024; flavodoxin-like 99.7 4.1E-17 1.4E-21 143.3 9.5 117 29-153 12-130 (138)
106 2hqr_A Putative transcriptiona 99.7 3E-16 1E-20 149.6 13.7 114 33-154 1-115 (223)
107 3luf_A Two-component system re 99.6 5.3E-16 1.8E-20 153.9 9.3 103 32-141 4-107 (259)
108 2vyc_A Biodegradative arginine 99.6 1.7E-15 5.7E-20 172.6 10.3 119 34-155 2-134 (755)
109 1w25_A Stalked-cell differenti 99.1 4.2E-09 1.4E-13 111.3 19.9 123 31-157 151-273 (459)
110 3cwo_X Beta/alpha-barrel prote 99.0 2.3E-10 8E-15 108.8 6.6 92 57-152 6-99 (237)
111 3sft_A CHEB, chemotaxis respon 98.3 1.8E-07 6.2E-12 90.3 3.0 41 217-260 7-48 (193)
112 1chd_A CHEB methylesterase; ch 98.2 3E-07 1E-11 89.4 1.3 41 217-260 10-50 (203)
113 3n75_A LDC, lysine decarboxyla 97.0 0.00075 2.6E-08 76.7 7.2 104 45-155 19-124 (715)
114 2ayx_A Sensor kinase protein R 97.0 0.0013 4.3E-08 64.3 7.4 96 30-152 9-104 (254)
115 3q7r_A Transcriptional regulat 96.9 0.0029 9.9E-08 55.0 7.8 108 31-154 11-118 (121)
116 2yxb_A Coenzyme B12-dependent 96.4 0.09 3.1E-06 48.6 14.9 122 31-156 17-147 (161)
117 3cwo_X Beta/alpha-barrel prote 95.9 0.021 7.2E-07 53.5 8.3 81 64-148 131-220 (237)
118 1ccw_A Protein (glutamate muta 94.5 1.1 3.7E-05 40.0 14.7 114 33-150 4-132 (137)
119 1wv2_A Thiazole moeity, thiazo 93.9 0.81 2.8E-05 45.9 13.7 120 32-158 105-242 (265)
120 3ogl_Q JAZ1 incomplete degron 91.7 0.089 3.1E-06 33.0 2.0 19 472-490 3-21 (21)
121 3q58_A N-acetylmannosamine-6-p 91.6 1.2 4.1E-05 43.4 11.2 88 42-136 115-209 (229)
122 1y80_A Predicted cobalamin bin 90.8 1.3 4.3E-05 42.1 10.2 100 32-136 88-196 (210)
123 2i2x_B MTAC, methyltransferase 90.8 2.8 9.7E-05 41.3 13.1 112 31-152 122-242 (258)
124 1xrs_B D-lysine 5,6-aminomutas 90.2 3.6 0.00012 41.2 13.3 117 32-153 120-257 (262)
125 3igs_A N-acetylmannosamine-6-p 90.2 2 7E-05 41.8 11.3 88 42-136 115-209 (232)
126 2htm_A Thiazole biosynthesis p 90.0 1.6 5.3E-05 44.0 10.3 104 49-158 117-233 (268)
127 3kp1_A D-ornithine aminomutase 87.7 3 0.0001 46.8 11.4 119 31-154 601-735 (763)
128 3ezx_A MMCP 1, monomethylamine 87.7 2.4 8.3E-05 40.8 9.7 100 32-136 92-202 (215)
129 3ogk_Q JAZ1 incomplete degron 87.1 0.17 5.9E-06 32.1 0.8 19 475-493 1-19 (22)
130 1req_A Methylmalonyl-COA mutas 86.8 6.7 0.00023 44.6 13.9 119 31-153 595-722 (727)
131 3qja_A IGPS, indole-3-glycerol 86.2 8.8 0.0003 38.3 13.1 87 45-136 151-241 (272)
132 3o63_A Probable thiamine-phosp 85.0 9.3 0.00032 37.5 12.5 75 57-136 136-218 (243)
133 3fkq_A NTRC-like two-domain pr 84.1 2.3 7.7E-05 43.8 7.9 104 31-152 20-126 (373)
134 3ffs_A Inosine-5-monophosphate 84.0 12 0.00042 39.4 13.6 101 33-136 157-274 (400)
135 2xij_A Methylmalonyl-COA mutas 83.6 7.1 0.00024 44.6 12.3 121 31-155 603-732 (762)
136 1yad_A Regulatory protein TENI 82.3 13 0.00044 35.0 11.9 74 56-136 110-191 (221)
137 3f4w_A Putative hexulose 6 pho 81.0 18 0.00063 33.5 12.4 97 35-136 80-186 (211)
138 1xi3_A Thiamine phosphate pyro 79.7 20 0.00068 33.1 12.1 74 56-136 108-189 (215)
139 4fo4_A Inosine 5'-monophosphat 79.6 26 0.0009 36.4 14.1 101 33-136 121-239 (366)
140 1xm3_A Thiazole biosynthesis p 78.3 7.6 0.00026 38.3 9.1 76 56-137 126-207 (264)
141 2gjl_A Hypothetical protein PA 77.7 19 0.00064 36.3 12.0 82 49-136 111-200 (328)
142 2bfw_A GLGA glycogen synthase; 75.9 36 0.0012 30.2 12.4 106 32-153 70-179 (200)
143 3usb_A Inosine-5'-monophosphat 75.9 36 0.0012 36.8 14.4 102 32-136 268-387 (511)
144 3rc1_A Sugar 3-ketoreductase; 75.4 36 0.0012 34.3 13.5 107 26-149 21-134 (350)
145 1r8j_A KAIA; circadian clock p 75.4 21 0.00072 35.9 11.1 85 29-117 6-90 (289)
146 3qz6_A HPCH/HPAI aldolase; str 74.9 21 0.00071 35.2 11.2 100 48-150 6-109 (261)
147 2vws_A YFAU, 2-keto-3-deoxy su 74.2 44 0.0015 32.9 13.4 98 48-149 9-110 (267)
148 2v5j_A 2,4-dihydroxyhept-2-ENE 73.9 41 0.0014 33.6 13.2 98 48-149 30-131 (287)
149 4had_A Probable oxidoreductase 73.9 29 0.00098 34.7 12.2 107 27-149 18-131 (350)
150 3e18_A Oxidoreductase; dehydro 73.4 23 0.00077 36.0 11.4 106 28-150 1-111 (359)
151 3bo9_A Putative nitroalkan dio 73.3 25 0.00085 35.6 11.6 81 50-136 118-204 (326)
152 2gek_A Phosphatidylinositol ma 73.2 25 0.00086 34.7 11.5 108 32-154 240-349 (406)
153 3khj_A Inosine-5-monophosphate 72.6 24 0.00083 36.5 11.5 101 33-136 118-235 (361)
154 3btv_A Galactose/lactose metab 72.6 5.9 0.0002 41.7 6.9 111 24-149 12-140 (438)
155 2c6q_A GMP reductase 2; TIM ba 72.4 49 0.0017 34.0 13.7 103 33-139 133-255 (351)
156 3bw2_A 2-nitropropane dioxygen 72.3 36 0.0012 34.9 12.7 79 52-136 141-236 (369)
157 2q5c_A NTRC family transcripti 72.2 42 0.0014 31.5 12.2 117 32-151 4-138 (196)
158 3tsm_A IGPS, indole-3-glycerol 72.1 32 0.0011 34.4 11.8 87 45-136 158-248 (272)
159 3bul_A Methionine synthase; tr 70.6 17 0.0006 40.2 10.3 101 32-138 98-212 (579)
160 1y0e_A Putative N-acetylmannos 70.4 23 0.0008 33.1 10.0 75 56-136 119-203 (223)
161 1dxe_A 2-dehydro-3-deoxy-galac 70.2 45 0.0016 32.5 12.4 97 48-147 10-109 (256)
162 4fb5_A Probable oxidoreductase 68.5 36 0.0012 34.0 11.5 106 28-149 21-139 (393)
163 3m2t_A Probable dehydrogenase; 68.4 31 0.001 35.0 11.1 108 28-150 1-114 (359)
164 2z6i_A Trans-2-enoyl-ACP reduc 68.0 37 0.0013 34.2 11.6 80 51-136 105-190 (332)
165 2ekc_A AQ_1548, tryptophan syn 67.9 22 0.00074 34.9 9.5 69 78-148 44-140 (262)
166 4avf_A Inosine-5'-monophosphat 67.7 77 0.0026 34.0 14.5 101 33-136 242-360 (490)
167 3u3x_A Oxidoreductase; structu 66.9 31 0.0011 35.0 10.8 104 30-149 24-133 (361)
168 2v82_A 2-dehydro-3-deoxy-6-pho 66.8 13 0.00044 34.7 7.3 94 50-152 95-197 (212)
169 1geq_A Tryptophan synthase alp 66.3 41 0.0014 31.9 11.0 83 48-137 125-220 (248)
170 2tps_A Protein (thiamin phosph 65.7 46 0.0016 30.9 11.0 70 61-136 122-199 (227)
171 4e38_A Keto-hydroxyglutarate-a 65.5 15 0.00052 35.9 7.7 93 48-146 27-121 (232)
172 1tlt_A Putative oxidoreductase 65.2 36 0.0012 33.5 10.6 100 28-146 1-107 (319)
173 1qv9_A F420-dependent methylen 64.5 21 0.00073 35.4 8.3 101 32-138 3-120 (283)
174 3r2g_A Inosine 5'-monophosphat 64.3 91 0.0031 32.3 13.7 96 33-136 113-227 (361)
175 1eep_A Inosine 5'-monophosphat 63.4 65 0.0022 33.4 12.6 91 43-136 180-284 (404)
176 3vnd_A TSA, tryptophan synthas 63.3 17 0.00057 36.2 7.7 52 94-147 83-140 (267)
177 3e9m_A Oxidoreductase, GFO/IDH 63.1 29 0.00098 34.7 9.5 106 28-149 1-112 (330)
178 3ec7_A Putative dehydrogenase; 62.8 46 0.0016 33.6 11.1 110 25-150 16-133 (357)
179 3rht_A (gatase1)-like protein; 62.7 3.3 0.00011 41.3 2.4 50 32-85 4-57 (259)
180 3fro_A GLGA glycogen synthase; 62.3 59 0.002 32.2 11.7 107 31-153 284-394 (439)
181 3gdo_A Uncharacterized oxidore 61.5 64 0.0022 32.5 11.9 103 28-150 1-111 (358)
182 1geq_A Tryptophan synthase alp 60.7 25 0.00086 33.5 8.2 48 93-143 68-121 (248)
183 1ka9_F Imidazole glycerol phos 60.4 43 0.0015 31.7 9.9 69 63-136 31-103 (252)
184 1qop_A Tryptophan synthase alp 60.3 27 0.00091 34.3 8.5 69 78-148 44-140 (268)
185 2w6r_A Imidazole glycerol phos 59.8 38 0.0013 32.5 9.4 67 65-137 158-229 (266)
186 1rzu_A Glycogen synthase 1; gl 59.5 62 0.0021 33.2 11.6 107 32-152 320-438 (485)
187 4h08_A Putative hydrolase; GDS 59.4 66 0.0023 28.8 10.5 80 32-116 20-119 (200)
188 1ka9_F Imidazole glycerol phos 58.9 78 0.0027 29.9 11.4 77 66-147 155-241 (252)
189 2f9f_A First mannosyl transfer 58.8 95 0.0032 27.3 12.1 107 32-154 50-162 (177)
190 3evn_A Oxidoreductase, GFO/IDH 58.2 21 0.00073 35.5 7.5 106 28-149 1-112 (329)
191 3beo_A UDP-N-acetylglucosamine 58.1 93 0.0032 30.3 12.2 71 65-155 273-343 (375)
192 2iw1_A Lipopolysaccharide core 57.9 37 0.0013 33.1 9.1 107 32-154 228-337 (374)
193 4e5v_A Putative THUA-like prot 57.1 9.8 0.00034 38.1 4.7 78 31-115 3-93 (281)
194 2xci_A KDO-transferase, 3-deox 56.9 22 0.00075 36.1 7.5 110 33-154 226-346 (374)
195 4h3v_A Oxidoreductase domain p 56.5 47 0.0016 33.1 9.8 97 29-141 3-110 (390)
196 3ajx_A 3-hexulose-6-phosphate 56.3 13 0.00045 34.4 5.3 73 64-141 11-88 (207)
197 3q2i_A Dehydrogenase; rossmann 56.0 1.5E+02 0.0052 29.4 13.5 104 29-149 10-120 (354)
198 2qzs_A Glycogen synthase; glyc 55.9 53 0.0018 33.7 10.3 107 32-152 321-439 (485)
199 4adt_A Pyridoxine biosynthetic 55.7 91 0.0031 31.4 11.6 86 60-151 130-257 (297)
200 2d00_A V-type ATP synthase sub 55.6 67 0.0023 27.6 9.2 77 30-115 1-79 (109)
201 3db2_A Putative NADPH-dependen 55.4 90 0.0031 31.2 11.7 101 31-149 4-111 (354)
202 1v4v_A UDP-N-acetylglucosamine 54.9 99 0.0034 30.3 11.8 101 33-154 231-334 (376)
203 1izc_A Macrophomate synthase i 54.5 1.4E+02 0.0047 30.6 13.0 90 58-149 45-137 (339)
204 3fwz_A Inner membrane protein 54.3 68 0.0023 27.6 9.3 94 32-136 30-124 (140)
205 4fxs_A Inosine-5'-monophosphat 54.3 1.5E+02 0.0053 31.7 13.9 101 33-136 244-362 (496)
206 2ixa_A Alpha-N-acetylgalactosa 54.0 61 0.0021 33.8 10.5 112 28-149 16-136 (444)
207 1jcn_A Inosine monophosphate d 54.0 83 0.0028 33.6 11.7 90 44-139 283-390 (514)
208 3oqb_A Oxidoreductase; structu 53.8 52 0.0018 33.3 9.7 43 107-149 82-128 (383)
209 1ypf_A GMP reductase; GUAC, pu 53.5 1.9E+02 0.0065 29.1 14.3 93 40-139 132-242 (336)
210 2p10_A MLL9387 protein; putati 53.3 66 0.0022 32.5 10.0 81 53-138 160-260 (286)
211 3ezy_A Dehydrogenase; structur 53.1 1.2E+02 0.0042 30.0 12.3 102 32-149 2-109 (344)
212 1zh8_A Oxidoreductase; TM0312, 52.4 1.6E+02 0.0055 29.2 13.0 104 30-149 16-127 (340)
213 3sc6_A DTDP-4-dehydrorhamnose 51.7 43 0.0015 31.8 8.2 78 33-116 6-106 (287)
214 3qhp_A Type 1 capsular polysac 51.6 62 0.0021 27.7 8.6 108 31-154 31-140 (166)
215 2nvw_A Galactose/lactose metab 51.6 40 0.0014 35.9 8.7 104 30-148 37-158 (479)
216 2iuy_A Avigt4, glycosyltransfe 51.4 31 0.0011 33.5 7.3 58 30-89 1-95 (342)
217 3c48_A Predicted glycosyltrans 51.0 97 0.0033 31.0 11.1 109 32-154 276-391 (438)
218 1h1y_A D-ribulose-5-phosphate 50.9 84 0.0029 29.7 10.1 85 50-137 107-201 (228)
219 3s83_A Ggdef family protein; s 50.5 33 0.0011 32.7 7.2 99 48-149 144-253 (259)
220 3okp_A GDP-mannose-dependent a 50.4 43 0.0015 32.8 8.2 108 32-154 229-344 (394)
221 3fhl_A Putative oxidoreductase 50.3 37 0.0013 34.3 7.8 105 28-150 1-111 (362)
222 2w6r_A Imidazole glycerol phos 50.3 49 0.0017 31.7 8.4 70 63-137 30-103 (266)
223 3abi_A Putative uncharacterize 50.2 38 0.0013 34.4 7.9 101 23-139 7-109 (365)
224 2oo3_A Protein involved in cat 50.1 23 0.0008 35.7 6.2 70 33-102 114-184 (283)
225 3mz0_A Inositol 2-dehydrogenas 50.0 1.7E+02 0.0058 29.0 12.7 102 32-149 2-111 (344)
226 4dzz_A Plasmid partitioning pr 49.8 56 0.0019 29.2 8.3 66 31-101 29-96 (206)
227 3rot_A ABC sugar transporter, 48.4 57 0.0019 31.1 8.5 64 46-116 23-94 (297)
228 3nav_A Tryptophan synthase alp 48.4 25 0.00085 35.1 6.1 53 92-146 83-141 (271)
229 3l49_A ABC sugar (ribose) tran 47.8 1.3E+02 0.0043 28.2 10.8 66 44-116 23-94 (291)
230 3jy6_A Transcriptional regulat 47.6 72 0.0025 29.9 9.0 62 45-116 26-93 (276)
231 3uuw_A Putative oxidoreductase 47.4 75 0.0025 31.1 9.4 102 30-150 4-112 (308)
232 2yw3_A 4-hydroxy-2-oxoglutarat 47.4 1E+02 0.0035 29.0 10.0 89 55-152 103-198 (207)
233 1p0k_A Isopentenyl-diphosphate 47.4 2.2E+02 0.0074 28.6 13.1 87 45-136 167-279 (349)
234 4hkt_A Inositol 2-dehydrogenas 47.3 1.1E+02 0.0039 30.0 10.8 100 32-149 3-108 (331)
235 1rd5_A Tryptophan synthase alp 47.3 55 0.0019 31.6 8.3 42 93-137 189-230 (262)
236 1vgv_A UDP-N-acetylglucosamine 47.2 79 0.0027 31.0 9.6 101 33-154 239-342 (384)
237 1ujp_A Tryptophan synthase alp 47.1 43 0.0015 33.2 7.6 81 64-148 28-137 (271)
238 2jjm_A Glycosyl transferase, g 46.9 39 0.0013 33.6 7.3 66 79-154 285-350 (394)
239 2qjg_A Putative aldolase MJ040 46.9 1.5E+02 0.0051 28.4 11.4 61 67-136 170-236 (273)
240 3cea_A MYO-inositol 2-dehydrog 46.9 2E+02 0.0069 28.2 12.6 96 30-140 6-105 (346)
241 3ovp_A Ribulose-phosphate 3-ep 46.7 42 0.0014 32.3 7.2 82 50-137 106-197 (228)
242 2vpt_A Lipolytic enzyme; ester 46.5 32 0.0011 31.4 6.2 83 30-116 3-128 (215)
243 3dty_A Oxidoreductase, GFO/IDH 45.8 2.5E+02 0.0086 28.5 13.5 111 30-149 10-130 (398)
244 3euw_A MYO-inositol dehydrogen 45.7 2E+02 0.0068 28.4 12.4 99 32-147 4-108 (344)
245 3o07_A Pyridoxine biosynthesis 45.6 62 0.0021 32.8 8.3 58 93-153 186-250 (291)
246 3ic5_A Putative saccharopine d 45.3 84 0.0029 25.2 8.0 90 32-134 5-97 (118)
247 1ep3_A Dihydroorotate dehydrog 45.2 76 0.0026 31.0 9.1 39 94-135 230-268 (311)
248 1vzw_A Phosphoribosyl isomeras 45.1 1.1E+02 0.0039 28.7 10.0 68 64-136 147-221 (244)
249 2lci_A Protein OR36; structura 44.9 54 0.0018 28.1 6.6 28 33-60 52-79 (134)
250 1h5y_A HISF; histidine biosynt 44.9 71 0.0024 29.7 8.4 68 64-136 155-226 (253)
251 3l9w_A Glutathione-regulated p 44.8 48 0.0017 34.7 7.9 96 32-138 27-123 (413)
252 1yxy_A Putative N-acetylmannos 44.8 98 0.0033 29.0 9.5 84 45-136 121-214 (234)
253 3snr_A Extracellular ligand-bi 44.8 73 0.0025 30.7 8.8 85 33-123 136-231 (362)
254 1wa3_A 2-keto-3-deoxy-6-phosph 44.7 36 0.0012 31.4 6.2 66 63-136 112-177 (205)
255 4a29_A Engineered retro-aldol 44.6 2.5E+02 0.0085 27.9 12.6 89 44-137 141-233 (258)
256 1qop_A Tryptophan synthase alp 44.5 89 0.003 30.5 9.3 41 94-137 194-234 (268)
257 3kts_A Glycerol uptake operon 44.5 32 0.0011 32.7 5.8 62 66-136 117-178 (192)
258 4eyg_A Twin-arginine transloca 44.4 1.4E+02 0.0047 29.0 10.8 84 34-121 141-236 (368)
259 1vrd_A Inosine-5'-monophosphat 44.4 1.9E+02 0.0066 30.5 12.7 90 44-136 265-368 (494)
260 3n74_A 3-ketoacyl-(acyl-carrie 44.4 1.3E+02 0.0046 28.0 10.4 85 28-116 5-91 (261)
261 2p2s_A Putative oxidoreductase 44.0 64 0.0022 32.0 8.4 103 30-148 2-110 (336)
262 4fxs_A Inosine-5'-monophosphat 43.9 65 0.0022 34.6 8.9 66 65-136 233-299 (496)
263 3ohs_X Trans-1,2-dihydrobenzen 43.8 1.5E+02 0.0052 29.2 11.2 102 32-150 2-112 (334)
264 3k4h_A Putative transcriptiona 43.0 95 0.0033 29.1 9.1 63 45-116 32-100 (292)
265 3v5n_A Oxidoreductase; structu 42.4 3E+02 0.01 28.2 14.0 111 30-149 35-155 (417)
266 3r2g_A Inosine 5'-monophosphat 42.4 76 0.0026 32.9 8.8 66 66-136 102-168 (361)
267 2fhp_A Methylase, putative; al 42.4 1.6E+02 0.0056 25.5 10.1 70 32-101 67-139 (187)
268 1h5y_A HISF; histidine biosynt 42.0 91 0.0031 29.0 8.7 69 63-136 33-105 (253)
269 3l4e_A Uncharacterized peptida 41.7 1E+02 0.0036 29.0 9.0 62 33-102 28-99 (206)
270 1wa3_A 2-keto-3-deoxy-6-phosph 41.2 1.6E+02 0.0053 26.9 10.1 91 51-146 6-98 (205)
271 1ydw_A AX110P-like protein; st 41.1 2.7E+02 0.0093 27.7 12.6 98 31-141 5-106 (362)
272 1thf_D HISF protein; thermophI 41.0 91 0.0031 29.4 8.6 67 65-136 153-223 (253)
273 2r60_A Glycosyl transferase, g 40.7 91 0.0031 32.1 9.2 99 45-153 321-423 (499)
274 3tdn_A FLR symmetric alpha-bet 40.4 80 0.0027 30.0 8.1 68 64-136 36-107 (247)
275 3ceu_A Thiamine phosphate pyro 40.1 42 0.0014 31.4 6.0 68 61-134 94-169 (210)
276 3huu_A Transcription regulator 40.0 91 0.0031 29.8 8.5 62 46-116 47-114 (305)
277 3moi_A Probable dehydrogenase; 39.8 2.2E+02 0.0076 28.7 11.9 101 32-149 2-109 (387)
278 3sgz_A Hydroxyacid oxidase 2; 39.5 1.8E+02 0.006 30.1 11.0 89 47-139 208-304 (352)
279 1f0k_A MURG, UDP-N-acetylgluco 39.4 44 0.0015 32.6 6.3 62 79-151 255-322 (364)
280 4gqa_A NAD binding oxidoreduct 39.3 2.7E+02 0.0093 28.2 12.5 103 32-150 26-142 (412)
281 1qo2_A Molecule: N-((5-phospho 39.3 93 0.0032 29.4 8.3 77 64-146 145-238 (241)
282 2x6q_A Trehalose-synthase TRET 39.1 2.9E+02 0.01 27.2 12.6 107 32-154 262-379 (416)
283 1thf_D HISF protein; thermophI 39.0 1.5E+02 0.0051 27.9 9.8 69 63-136 30-102 (253)
284 3o9z_A Lipopolysaccaride biosy 38.8 79 0.0027 31.4 8.1 108 32-150 3-118 (312)
285 1gox_A (S)-2-hydroxy-acid oxid 38.7 1.4E+02 0.0048 30.6 10.2 90 46-139 215-312 (370)
286 3sr7_A Isopentenyl-diphosphate 38.6 2.2E+02 0.0077 29.3 11.7 88 46-139 196-310 (365)
287 4avf_A Inosine-5'-monophosphat 38.6 95 0.0032 33.2 9.1 68 64-136 229-297 (490)
288 3bbl_A Regulatory protein of L 38.4 1.3E+02 0.0046 28.3 9.4 64 44-116 26-95 (287)
289 3qk7_A Transcriptional regulat 38.3 1E+02 0.0034 29.3 8.5 63 45-116 29-96 (294)
290 2y88_A Phosphoribosyl isomeras 38.2 80 0.0027 29.7 7.7 68 64-136 150-224 (244)
291 3e82_A Putative oxidoreductase 38.2 2.1E+02 0.0072 28.7 11.3 101 30-149 5-112 (364)
292 2fli_A Ribulose-phosphate 3-ep 38.2 45 0.0015 30.9 5.8 83 50-136 103-197 (220)
293 3kjx_A Transcriptional regulat 38.2 2.1E+02 0.007 27.8 11.0 62 44-114 86-153 (344)
294 3f4w_A Putative hexulose 6 pho 37.9 61 0.0021 29.8 6.7 74 64-141 11-88 (211)
295 2nli_A Lactate oxidase; flavoe 37.9 1.8E+02 0.0061 29.9 10.8 90 46-139 219-316 (368)
296 3td9_A Branched chain amino ac 37.6 2.2E+02 0.0076 27.6 11.1 85 32-122 149-244 (366)
297 3ot5_A UDP-N-acetylglucosamine 37.6 2.3E+02 0.0078 29.0 11.6 43 107-154 319-361 (403)
298 3p9n_A Possible methyltransfer 37.5 1.4E+02 0.0048 26.5 8.9 69 32-102 67-139 (189)
299 1req_B Methylmalonyl-COA mutas 37.2 47 0.0016 37.2 6.6 95 46-148 528-629 (637)
300 1tqj_A Ribulose-phosphate 3-ep 37.0 55 0.0019 31.3 6.4 81 64-150 18-107 (230)
301 4dqx_A Probable oxidoreductase 36.9 2E+02 0.0069 27.6 10.5 85 28-116 23-109 (277)
302 3jr2_A Hexulose-6-phosphate sy 36.8 39 0.0013 31.9 5.1 76 64-143 17-96 (218)
303 3ffs_A Inosine-5-monophosphate 36.7 86 0.0029 33.0 8.2 65 66-136 146-211 (400)
304 1rd5_A Tryptophan synthase alp 36.6 82 0.0028 30.3 7.6 49 93-145 82-133 (262)
305 2gjl_A Hypothetical protein PA 36.6 2.7E+02 0.0094 27.5 11.8 62 64-137 84-145 (328)
306 1x1o_A Nicotinate-nucleotide p 36.5 2.4E+02 0.0082 28.2 11.1 93 34-136 168-267 (286)
307 4fo4_A Inosine 5'-monophosphat 36.0 1.9E+02 0.0066 29.8 10.7 66 66-136 110-176 (366)
308 4egb_A DTDP-glucose 4,6-dehydr 35.6 1.7E+02 0.0058 28.4 9.9 39 23-61 15-55 (346)
309 2avd_A Catechol-O-methyltransf 35.5 2E+02 0.0068 26.1 9.8 69 32-102 94-167 (229)
310 1vc4_A Indole-3-glycerol phosp 35.1 61 0.0021 31.7 6.4 87 46-136 141-235 (254)
311 3kux_A Putative oxidoreductase 35.0 2.5E+02 0.0086 27.9 11.2 100 31-149 6-112 (352)
312 2ho3_A Oxidoreductase, GFO/IDH 35.0 3.3E+02 0.011 26.5 12.3 99 32-147 1-105 (325)
313 3tr6_A O-methyltransferase; ce 34.8 1.7E+02 0.0058 26.5 9.2 69 32-102 89-162 (225)
314 3r6d_A NAD-dependent epimerase 34.7 2.5E+02 0.0085 25.3 10.3 33 34-66 7-41 (221)
315 2hq1_A Glucose/ribitol dehydro 34.7 1.7E+02 0.0059 26.8 9.3 84 29-116 2-91 (247)
316 3oy2_A Glycosyltransferase B73 34.3 99 0.0034 30.7 8.0 108 32-154 215-355 (413)
317 3lyl_A 3-oxoacyl-(acyl-carrier 34.2 2.4E+02 0.0083 25.9 10.4 84 29-116 2-90 (247)
318 3l6u_A ABC-type sugar transpor 34.0 1.1E+02 0.0036 28.8 7.8 66 45-117 27-98 (293)
319 3tjr_A Short chain dehydrogena 34.0 1.8E+02 0.0062 28.2 9.7 82 31-116 30-116 (301)
320 3gx8_A Monothiol glutaredoxin- 33.8 1.6E+02 0.0056 25.0 8.3 71 42-116 3-82 (121)
321 3dbi_A Sugar-binding transcrip 33.8 3.1E+02 0.011 26.3 11.5 65 44-116 81-151 (338)
322 2l69_A Rossmann 2X3 fold prote 33.7 2.2E+02 0.0077 24.2 12.6 115 33-154 3-123 (134)
323 1sui_A Caffeoyl-COA O-methyltr 33.7 2.5E+02 0.0086 26.5 10.5 70 32-103 104-179 (247)
324 3e3m_A Transcriptional regulat 33.6 1.3E+02 0.0045 29.5 8.8 63 44-115 88-156 (355)
325 3tb6_A Arabinose metabolism tr 33.5 1.6E+02 0.0054 27.5 8.9 67 44-116 33-107 (298)
326 1me8_A Inosine-5'-monophosphat 33.4 2.9E+02 0.0099 29.4 11.9 74 60-136 290-380 (503)
327 4gnr_A ABC transporter substra 33.3 1.7E+02 0.0058 28.3 9.4 93 33-131 145-245 (353)
328 4gud_A Imidazole glycerol phos 33.3 82 0.0028 29.0 6.7 43 34-84 4-46 (211)
329 1ujp_A Tryptophan synthase alp 33.3 1.4E+02 0.0049 29.3 8.8 85 45-137 133-229 (271)
330 3vkj_A Isopentenyl-diphosphate 33.1 3.1E+02 0.011 28.2 11.7 90 44-139 175-299 (368)
331 2iuy_A Avigt4, glycosyltransfe 33.0 61 0.0021 31.4 6.1 107 32-153 188-307 (342)
332 1e6u_A GDP-fucose synthetase; 33.0 1.8E+02 0.0063 27.7 9.5 57 31-89 2-66 (321)
333 4ew6_A D-galactose-1-dehydroge 32.9 1.2E+02 0.004 30.3 8.2 105 25-150 18-127 (330)
334 2nzl_A Hydroxyacid oxidase 1; 32.8 1.6E+02 0.0055 30.6 9.5 75 61-139 259-339 (392)
335 3grp_A 3-oxoacyl-(acyl carrier 32.7 2.2E+02 0.0076 27.0 10.0 84 29-116 24-109 (266)
336 1tqx_A D-ribulose-5-phosphate 32.7 91 0.0031 30.0 7.1 83 51-137 109-201 (227)
337 3l6e_A Oxidoreductase, short-c 32.6 2.3E+02 0.008 26.2 9.9 82 31-116 2-85 (235)
338 2b4q_A Rhamnolipids biosynthes 32.4 2.4E+02 0.0083 26.9 10.3 96 19-116 16-113 (276)
339 2rgy_A Transcriptional regulat 32.3 2.4E+02 0.0083 26.4 10.2 64 44-116 26-98 (290)
340 3oa2_A WBPB; oxidoreductase, s 32.3 1.4E+02 0.0047 29.7 8.6 109 32-150 3-119 (318)
341 1qdl_B Protein (anthranilate s 32.2 29 0.00099 32.0 3.3 48 35-84 4-51 (195)
342 3sho_A Transcriptional regulat 32.1 2.1E+02 0.0072 25.4 9.2 94 34-138 41-139 (187)
343 3zv4_A CIS-2,3-dihydrobiphenyl 32.0 2.3E+02 0.008 27.0 10.1 84 29-116 2-87 (281)
344 3sz8_A 2-dehydro-3-deoxyphosph 32.0 2.6E+02 0.0089 28.1 10.5 67 65-137 150-242 (285)
345 3gnn_A Nicotinate-nucleotide p 32.0 2.5E+02 0.0086 28.4 10.4 65 60-134 214-278 (298)
346 2p9j_A Hypothetical protein AQ 31.9 2.4E+02 0.0082 24.0 9.6 56 79-138 9-82 (162)
347 2fn9_A Ribose ABC transporter, 31.9 3.2E+02 0.011 25.4 11.2 65 45-116 21-91 (290)
348 3inp_A D-ribulose-phosphate 3- 31.8 99 0.0034 30.3 7.3 82 64-149 41-128 (246)
349 4e38_A Keto-hydroxyglutarate-a 31.7 1.8E+02 0.0063 28.2 9.1 78 50-136 121-201 (232)
350 3oti_A CALG3; calicheamicin, T 31.7 1.4E+02 0.0049 29.6 8.8 34 31-64 19-56 (398)
351 3tsa_A SPNG, NDP-rhamnosyltran 31.7 1.7E+02 0.0059 28.7 9.3 73 32-115 1-142 (391)
352 2rjo_A Twin-arginine transloca 31.6 1.7E+02 0.0058 28.2 9.1 64 45-116 24-96 (332)
353 3lab_A Putative KDPG (2-keto-3 31.6 1.1E+02 0.0039 29.5 7.5 82 59-146 18-100 (217)
354 2qfm_A Spermine synthase; sper 31.5 2E+02 0.007 29.8 9.9 69 32-100 211-296 (364)
355 3usb_A Inosine-5'-monophosphat 31.4 1.3E+02 0.0045 32.3 8.9 68 64-136 256-324 (511)
356 3g1w_A Sugar ABC transporter; 31.1 2.3E+02 0.0077 26.7 9.7 64 46-116 24-94 (305)
357 3gjy_A Spermidine synthase; AP 31.0 99 0.0034 31.4 7.4 70 32-103 113-189 (317)
358 3hcw_A Maltose operon transcri 31.0 1.5E+02 0.0052 28.0 8.5 68 40-116 23-99 (295)
359 1es9_A PAF-AH, platelet-activa 30.9 2.6E+02 0.0088 25.4 9.8 83 31-117 37-139 (232)
360 2o23_A HADH2 protein; HSD17B10 30.7 1.6E+02 0.0056 27.3 8.5 85 28-116 8-94 (265)
361 2fpo_A Methylase YHHF; structu 30.6 1.2E+02 0.0039 27.7 7.2 67 33-102 78-146 (202)
362 3h8q_A Thioredoxin reductase 3 30.6 1.8E+02 0.0061 24.1 7.9 72 42-116 4-78 (114)
363 4e6p_A Probable sorbitol dehyd 30.6 3.3E+02 0.011 25.5 10.7 81 32-116 8-90 (259)
364 3md9_A Hemin-binding periplasm 30.5 1.3E+02 0.0044 28.3 7.7 41 70-119 53-93 (255)
365 3duw_A OMT, O-methyltransferas 30.4 3E+02 0.01 24.7 11.2 80 32-115 83-166 (223)
366 3m2p_A UDP-N-acetylglucosamine 30.3 2.4E+02 0.0082 26.9 9.8 30 32-61 2-31 (311)
367 3lkb_A Probable branched-chain 30.2 2E+02 0.0069 28.2 9.5 84 33-122 144-238 (392)
368 2ift_A Putative methylase HI07 30.1 71 0.0024 29.2 5.6 68 33-102 77-149 (201)
369 2fep_A Catabolite control prot 30.0 2E+02 0.0069 27.0 9.1 63 45-116 35-103 (289)
370 1kjq_A GART 2, phosphoribosylg 29.8 1.4E+02 0.0049 29.8 8.4 35 28-63 7-41 (391)
371 3i23_A Oxidoreductase, GFO/IDH 29.8 57 0.0019 32.7 5.3 103 32-149 2-110 (349)
372 3c1r_A Glutaredoxin-1; oxidize 29.7 1.5E+02 0.0051 24.8 7.3 73 41-116 11-90 (118)
373 2yxd_A Probable cobalt-precorr 29.7 2.6E+02 0.0089 23.8 10.5 65 31-103 56-122 (183)
374 1kbi_A Cytochrome B2, L-LCR; f 29.7 2.8E+02 0.0095 29.9 11.0 91 46-139 333-435 (511)
375 1rpx_A Protein (ribulose-phosp 29.7 48 0.0016 31.2 4.5 58 78-136 140-206 (230)
376 1jvn_A Glutamine, bifunctional 29.6 3.1E+02 0.011 29.7 11.5 77 65-147 454-542 (555)
377 4amg_A Snogd; transferase, pol 29.6 88 0.003 30.9 6.7 31 32-63 22-57 (400)
378 3rhb_A ATGRXC5, glutaredoxin-C 29.5 1E+02 0.0036 25.2 6.1 73 42-116 6-81 (113)
379 1i4n_A Indole-3-glycerol phosp 29.5 2.1E+02 0.0073 28.0 9.3 87 45-136 139-229 (251)
380 2iks_A DNA-binding transcripti 29.4 2.6E+02 0.009 26.1 9.8 64 45-116 39-108 (293)
381 4fyk_A Deoxyribonucleoside 5'- 29.2 2E+02 0.0067 26.2 8.3 100 43-153 19-141 (152)
382 3hut_A Putative branched-chain 29.2 2.3E+02 0.0078 27.3 9.5 85 33-123 140-235 (358)
383 4fzr_A SSFS6; structural genom 29.2 1.3E+02 0.0043 30.0 7.8 76 29-115 12-151 (398)
384 3c3y_A Pfomt, O-methyltransfer 29.2 2.4E+02 0.0082 26.3 9.4 69 32-102 95-169 (237)
385 3dr5_A Putative O-methyltransf 29.1 1.1E+02 0.0037 28.6 6.9 78 32-115 81-162 (221)
386 3dzc_A UDP-N-acetylglucosamine 28.9 1.2E+02 0.004 31.0 7.6 101 33-154 264-367 (396)
387 3qiv_A Short-chain dehydrogena 28.8 2.8E+02 0.0094 25.7 9.7 85 28-116 5-94 (253)
388 3llv_A Exopolyphosphatase-rela 28.6 2.5E+02 0.0085 23.5 8.6 94 31-136 28-122 (141)
389 3gv0_A Transcriptional regulat 28.4 1E+02 0.0035 29.1 6.6 61 47-116 31-97 (288)
390 3o74_A Fructose transport syst 28.4 1.3E+02 0.0043 27.8 7.2 65 45-117 21-91 (272)
391 2ioy_A Periplasmic sugar-bindi 28.3 1.9E+02 0.0064 27.1 8.5 64 45-116 20-90 (283)
392 2fvy_A D-galactose-binding per 28.3 1.8E+02 0.0063 27.3 8.5 66 44-117 20-93 (309)
393 3tfw_A Putative O-methyltransf 28.2 2.2E+02 0.0074 26.8 8.9 79 32-115 88-169 (248)
394 3hp4_A GDSL-esterase; psychrot 28.1 1E+02 0.0036 26.7 6.2 56 32-87 2-75 (185)
395 3vk5_A MOEO5; TIM barrel, tran 28.1 1.2E+02 0.0042 30.5 7.3 59 78-138 199-257 (286)
396 1vcf_A Isopentenyl-diphosphate 28.1 2.4E+02 0.0082 28.2 9.7 73 63-140 193-289 (332)
397 1qpo_A Quinolinate acid phosph 28.1 1.8E+02 0.0061 29.0 8.6 95 34-135 167-267 (284)
398 2xxa_A Signal recognition part 28.0 1.3E+02 0.0045 31.6 8.0 53 32-86 129-191 (433)
399 3ctg_A Glutaredoxin-2; reduced 28.0 1.7E+02 0.0058 25.1 7.5 73 41-116 23-102 (129)
400 1p9l_A Dihydrodipicolinate red 28.0 4.2E+02 0.014 25.6 12.2 76 33-116 1-77 (245)
401 2gk3_A Putative cytoplasmic pr 28.0 70 0.0024 31.0 5.5 62 47-117 44-127 (256)
402 3egc_A Putative ribose operon 27.9 1E+02 0.0036 29.0 6.6 64 45-117 27-96 (291)
403 3u9l_A 3-oxoacyl-[acyl-carrier 27.7 2E+02 0.0067 28.5 8.9 85 28-116 1-95 (324)
404 3slg_A PBGP3 protein; structur 27.7 1.9E+02 0.0065 28.4 8.8 33 30-62 22-55 (372)
405 3khj_A Inosine-5-monophosphate 27.6 1.8E+02 0.0061 29.9 8.7 65 66-136 107-172 (361)
406 1h6d_A Precursor form of gluco 27.5 1.3E+02 0.0045 31.2 7.8 106 29-148 80-194 (433)
407 2dri_A D-ribose-binding protei 27.5 1.7E+02 0.0058 27.2 8.0 64 45-116 20-90 (271)
408 3l0g_A Nicotinate-nucleotide p 27.5 2E+02 0.0069 29.1 8.8 66 59-134 211-276 (300)
409 1p4c_A L(+)-mandelate dehydrog 27.5 1.7E+02 0.0059 30.1 8.6 89 45-139 214-310 (380)
410 2o6l_A UDP-glucuronosyltransfe 27.5 3E+02 0.01 23.7 9.4 68 78-155 86-155 (170)
411 1tqj_A Ribulose-phosphate 3-ep 27.4 96 0.0033 29.6 6.2 86 48-137 104-201 (230)
412 3tqv_A Nicotinate-nucleotide p 27.1 2.2E+02 0.0074 28.7 8.9 66 60-135 203-268 (287)
413 3ak4_A NADH-dependent quinucli 26.9 3.8E+02 0.013 24.9 10.4 84 29-116 9-94 (263)
414 2px0_A Flagellar biosynthesis 26.8 1.3E+02 0.0045 29.8 7.3 59 32-93 134-195 (296)
415 4iin_A 3-ketoacyl-acyl carrier 26.8 2.7E+02 0.0091 26.3 9.4 85 28-116 25-115 (271)
416 2ehd_A Oxidoreductase, oxidore 26.8 1.6E+02 0.0055 26.9 7.6 80 32-116 5-86 (234)
417 1pii_A N-(5'phosphoribosyl)ant 26.7 4.2E+02 0.014 28.2 11.6 86 45-136 146-235 (452)
418 1xea_A Oxidoreductase, GFO/IDH 26.7 2.3E+02 0.0078 27.8 9.1 98 32-146 2-105 (323)
419 3tqv_A Nicotinate-nucleotide p 26.7 1.4E+02 0.0047 30.1 7.4 67 80-150 170-238 (287)
420 3m1a_A Putative dehydrogenase; 26.7 1.5E+02 0.0052 28.1 7.6 83 30-116 3-87 (281)
421 2ydy_A Methionine adenosyltran 26.3 2.1E+02 0.0073 27.2 8.7 31 33-63 3-33 (315)
422 1jcn_A Inosine monophosphate d 26.3 2.2E+02 0.0074 30.4 9.4 67 65-136 256-323 (514)
423 3ipz_A Monothiol glutaredoxin- 26.2 1.1E+02 0.0038 25.4 5.7 84 41-130 4-97 (109)
424 3e03_A Short chain dehydrogena 26.1 4.2E+02 0.014 25.0 10.7 85 28-116 2-98 (274)
425 3sg0_A Extracellular ligand-bi 25.9 1.4E+02 0.0048 29.0 7.3 85 33-123 160-255 (386)
426 3sc4_A Short chain dehydrogena 25.8 2.6E+02 0.0089 26.7 9.2 85 28-116 5-101 (285)
427 3m9w_A D-xylose-binding peripl 25.8 2.8E+02 0.0097 26.2 9.4 66 44-116 20-91 (313)
428 3cbg_A O-methyltransferase; cy 25.6 2.8E+02 0.0097 25.6 9.1 80 32-115 97-181 (232)
429 1i1q_B Anthranilate synthase c 25.6 75 0.0026 29.0 4.9 51 33-84 1-54 (192)
430 2gl5_A Putative dehydratase pr 25.4 2E+02 0.0068 29.5 8.7 78 64-146 230-308 (410)
431 8abp_A L-arabinose-binding pro 25.2 2.4E+02 0.0081 26.5 8.6 65 45-116 21-90 (306)
432 3h5l_A Putative branched-chain 24.9 2.1E+02 0.0071 28.6 8.5 84 33-121 165-259 (419)
433 2i7c_A Spermidine synthase; tr 24.9 1.7E+02 0.0058 28.4 7.6 69 32-103 102-181 (283)
434 3lop_A Substrate binding perip 24.8 1.3E+02 0.0045 29.3 6.9 79 34-118 143-232 (364)
435 2rdx_A Mandelate racemase/muco 24.8 1.1E+02 0.0039 31.1 6.6 70 64-141 201-271 (379)
436 3h75_A Periplasmic sugar-bindi 24.7 2.6E+02 0.009 27.1 9.1 65 46-117 24-95 (350)
437 3h2s_A Putative NADH-flavin re 24.7 89 0.003 28.2 5.2 55 33-90 1-56 (224)
438 2bdq_A Copper homeostasis prot 24.7 2.4E+02 0.0082 27.4 8.4 88 45-136 106-206 (224)
439 2qr6_A IMP dehydrogenase/GMP r 24.7 4E+02 0.014 27.1 10.8 80 50-136 149-238 (393)
440 3s28_A Sucrose synthase 1; gly 24.7 3.8E+02 0.013 30.7 11.4 107 33-152 604-728 (816)
441 1twd_A Copper homeostasis prot 24.6 3.2E+02 0.011 27.1 9.5 86 45-135 103-196 (256)
442 3dqp_A Oxidoreductase YLBE; al 24.4 3.8E+02 0.013 24.0 9.8 27 34-60 2-28 (219)
443 2otd_A Glycerophosphodiester p 24.4 3E+02 0.01 25.9 9.2 15 121-135 219-233 (247)
444 3gem_A Short chain dehydrogena 24.3 1E+02 0.0034 29.4 5.8 86 25-116 20-107 (260)
445 3op4_A 3-oxoacyl-[acyl-carrier 24.3 3.8E+02 0.013 24.9 9.8 84 29-116 6-91 (248)
446 1sby_A Alcohol dehydrogenase; 24.3 3.2E+02 0.011 25.3 9.2 86 29-116 2-92 (254)
447 3njr_A Precorrin-6Y methylase; 24.2 1.4E+02 0.0046 27.4 6.4 64 32-103 77-143 (204)
448 4g92_A HAPB protein; transcrip 24.2 71 0.0024 25.3 3.7 26 492-517 36-62 (64)
449 1ws6_A Methyltransferase; stru 24.1 2.3E+02 0.008 24.0 7.7 68 33-101 64-132 (171)
450 1k1e_A Deoxy-D-mannose-octulos 24.1 3.7E+02 0.013 23.6 10.2 43 94-140 41-83 (180)
451 3i45_A Twin-arginine transloca 23.9 4.5E+02 0.016 25.6 10.8 81 32-116 142-235 (387)
452 2h6r_A Triosephosphate isomera 23.8 3.1E+02 0.011 25.8 9.1 82 50-136 105-198 (219)
453 3i1j_A Oxidoreductase, short c 23.8 2.5E+02 0.0084 25.9 8.3 85 30-116 12-102 (247)
454 3brs_A Periplasmic binding pro 23.8 2.1E+02 0.0073 26.5 7.9 63 46-116 27-98 (289)
455 4h83_A Mandelate racemase/muco 23.8 1.2E+02 0.0041 31.2 6.6 71 64-138 221-292 (388)
456 2vk2_A YTFQ, ABC transporter p 23.8 4.6E+02 0.016 24.7 10.5 63 46-116 22-91 (306)
457 2r6o_A Putative diguanylate cy 23.7 1.4E+02 0.0046 29.5 6.7 100 47-149 167-277 (294)
458 3paj_A Nicotinate-nucleotide p 23.7 3.9E+02 0.013 27.2 10.2 91 34-134 204-300 (320)
459 2uva_G Fatty acid synthase bet 23.6 1.2E+02 0.0042 38.5 7.6 84 48-136 684-794 (2060)
460 1o2d_A Alcohol dehydrogenase, 23.6 1.3E+02 0.0044 30.7 6.7 79 33-116 41-148 (371)
461 3oig_A Enoyl-[acyl-carrier-pro 23.6 4.2E+02 0.015 24.6 10.1 85 30-116 5-95 (266)
462 3qvq_A Phosphodiesterase OLEI0 23.6 3.4E+02 0.012 25.7 9.5 37 95-136 201-237 (252)
463 1t0b_A THUA-like protein; treh 23.5 1.7E+02 0.0058 28.4 7.3 49 32-84 7-73 (252)
464 1z0s_A Probable inorganic poly 23.5 54 0.0018 32.8 3.7 93 33-153 30-122 (278)
465 3nav_A Tryptophan synthase alp 23.4 3.1E+02 0.011 27.1 9.2 98 35-138 129-238 (271)
466 3h5o_A Transcriptional regulat 23.3 2.7E+02 0.0092 26.9 8.8 65 43-116 79-149 (339)
467 2wsb_A Galactitol dehydrogenas 23.3 4.3E+02 0.015 24.1 10.2 82 30-116 9-93 (254)
468 1ja9_A 4HNR, 1,3,6,8-tetrahydr 23.2 3E+02 0.01 25.5 8.9 84 28-115 17-106 (274)
469 3iwp_A Copper homeostasis prot 22.8 1.9E+02 0.0064 29.2 7.5 77 56-138 39-132 (287)
470 2dwc_A PH0318, 433AA long hypo 22.8 2.2E+02 0.0076 29.0 8.4 31 32-63 19-49 (433)
471 4eg0_A D-alanine--D-alanine li 22.8 64 0.0022 31.7 4.1 55 31-87 12-74 (317)
472 2hnk_A SAM-dependent O-methylt 22.7 3.1E+02 0.011 25.2 8.8 69 32-102 85-169 (239)
473 3ajx_A 3-hexulose-6-phosphate 22.7 2.6E+02 0.009 25.3 8.1 85 45-136 92-185 (207)
474 3tj4_A Mandelate racemase; eno 22.7 2.6E+02 0.0088 28.5 8.8 78 64-146 209-287 (372)
475 3ip3_A Oxidoreductase, putativ 22.6 2E+02 0.0069 28.4 7.8 43 108-150 67-113 (337)
476 3c0k_A UPF0064 protein YCCW; P 22.6 2E+02 0.007 29.2 8.0 54 33-86 244-301 (396)
477 1uf3_A Hypothetical protein TT 22.6 2.1E+02 0.0071 25.6 7.4 69 28-119 1-74 (228)
478 1j8m_F SRP54, signal recogniti 22.6 2.3E+02 0.008 27.9 8.2 53 32-86 126-188 (297)
479 3u81_A Catechol O-methyltransf 22.5 1.9E+02 0.0066 26.3 7.2 59 32-90 83-146 (221)
480 1vl0_A DTDP-4-dehydrorhamnose 22.5 3.3E+02 0.011 25.5 9.1 57 31-89 11-74 (292)
481 3mil_A Isoamyl acetate-hydroly 22.5 2.8E+02 0.0096 24.8 8.2 81 32-116 3-121 (240)
482 2r7a_A Bacterial heme binding 22.5 2.2E+02 0.0075 26.6 7.7 38 70-116 53-90 (256)
483 3e05_A Precorrin-6Y C5,15-meth 22.4 1.2E+02 0.004 27.3 5.6 66 32-103 64-131 (204)
484 2dul_A N(2),N(2)-dimethylguano 22.4 2.2E+02 0.0076 29.2 8.3 77 33-117 72-165 (378)
485 3ek2_A Enoyl-(acyl-carrier-pro 22.3 2.5E+02 0.0087 26.1 8.1 82 31-116 13-100 (271)
486 3inp_A D-ribulose-phosphate 3- 22.2 1E+02 0.0034 30.2 5.3 59 78-137 156-223 (246)
487 3l0g_A Nicotinate-nucleotide p 22.1 2.3E+02 0.0078 28.7 8.0 52 95-150 196-247 (300)
488 1rpx_A Protein (ribulose-phosp 22.0 2.5E+02 0.0084 26.1 7.9 71 64-139 24-100 (230)
489 2r79_A Periplasmic binding pro 22.0 1.3E+02 0.0046 28.8 6.2 45 70-123 53-97 (283)
490 3pxx_A Carveol dehydrogenase; 22.0 2.8E+02 0.0096 26.1 8.5 82 31-116 9-107 (287)
491 2pyy_A Ionotropic glutamate re 21.9 2.3E+02 0.0078 24.7 7.3 51 29-86 109-159 (228)
492 3e8x_A Putative NAD-dependent 21.8 97 0.0033 28.5 5.0 56 29-87 18-75 (236)
493 3nkl_A UDP-D-quinovosamine 4-d 21.8 3.5E+02 0.012 22.6 8.7 33 31-63 3-36 (141)
494 1n2z_A Vitamin B12 transport p 21.8 99 0.0034 28.9 5.1 66 78-153 57-123 (245)
495 3iwp_A Copper homeostasis prot 21.8 1.7E+02 0.0058 29.5 6.9 70 62-135 165-236 (287)
496 3d8u_A PURR transcriptional re 21.8 3.2E+02 0.011 25.0 8.7 64 44-116 21-90 (275)
497 3pfn_A NAD kinase; structural 21.8 99 0.0034 32.2 5.4 108 27-154 33-164 (365)
498 2nv1_A Pyridoxal biosynthesis 21.6 83 0.0028 31.2 4.7 42 93-137 195-238 (305)
499 1hdc_A 3-alpha, 20 beta-hydrox 21.6 4.9E+02 0.017 24.2 10.3 81 32-116 5-87 (254)
500 2b78_A Hypothetical protein SM 21.5 1.8E+02 0.0063 29.6 7.4 54 33-86 236-293 (385)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=1.4e-25 Score=204.62 Aligned_cols=121 Identities=24% Similarity=0.487 Sum_probs=113.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+|||||||++.+|..+..+|+..||+ |.+|.+|.+|++++... .||+||+|+.||+|||++++++||+....+++|
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ip 89 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLP 89 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCe
Confidence 579999999999999999999999996 66899999999999887 899999999999999999999999876678999
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++|+..+.+...+++++||+|||.|||+..+|...|++++++
T Consensus 90 vI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 90 VLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp EEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999887653
No 2
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.90 E-value=4.5e-23 Score=215.13 Aligned_cols=183 Identities=21% Similarity=0.295 Sum_probs=142.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|++++||||||++.++..|..+|... +|+ |..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +
T Consensus 1 M~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~dGlell~~l~~~~--p 76 (349)
T 1a2o_A 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMDGLDFLEKLMRLR--P 76 (349)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSCHHHHHHHHHHSS--C
T ss_pred CCCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHhcC--C
Confidence 45689999999999999999999986 898 55999999999999876 799999999999999999999999853 3
Q ss_pred CceEEEEecCCCH--HHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHHHHHHhhhhhhhccccccccccCC
Q 008655 108 RIPVIMMSAQDEV--SVVVKCLRLGAADYLVKPLRT---------NELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASD 176 (558)
Q Consensus 108 ~iPVIVLSa~~d~--e~a~eAL~~GA~DYL~KP~~~---------eeL~~~L~~llr~~r~~~l~~r~~~~~~~~lvgss 176 (558)
+|||++|+..+. +...++++.||+|||.||++. ++|...++.+.+... .. ....
T Consensus 77 -~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~------~~--------~~~~ 141 (349)
T 1a2o_A 77 -MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARI------AA--------HKPM 141 (349)
T ss_dssp -CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCG------GG--------GSCC
T ss_pred -CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhc------cc--------CCCc
Confidence 999999998775 458899999999999999983 445555444432110 00 0000
Q ss_pred CCCCCCCcceeeecCCccccccCCCCCCCCCCCccccCCCccEEEEEccccchhhccccccccCCCCCCccccccCCCCC
Q 008655 177 PSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVPGISDRRTGQFS 256 (558)
Q Consensus 177 p~~a~s~~tvLi~ges~~~~~~~~~~~l~~~~~~e~~s~~~~iVaIGASTGGp~AL~~I~L~~lPaD~Ppil~~~~~~l~ 256 (558)
+. .. . . .. .. . .....+++||+||||++||+.+ |..+|++++++++.| ||+
T Consensus 142 ~~--~~--~------------~--~~------~~-~-~~~~~vv~iGaS~gG~~al~~~-l~~lp~~~~~ivivq--H~~ 192 (349)
T 1a2o_A 142 AA--PT--T------------L--KA------GP-L-LSSEKLIAIGASTGGTEAIRHV-LQPLPLSSPAVIITQ--HMP 192 (349)
T ss_dssp CC--CC--C------------C--CC------CC-C-CCTTCEEEEEECTTHHHHHHHH-HTTCCTTCCEEEEEE--CCC
T ss_pred cc--cC--C------------C--CC------cc-c-CCCceEEEEecCcccHHHHHHH-HHhCCCCCCeEEEEe--cCC
Confidence 00 00 0 0 00 00 0 0234699999999999999999 999999998888888 999
Q ss_pred CCCc
Q 008655 257 AGPK 260 (558)
Q Consensus 257 ~~~~ 260 (558)
++++
T Consensus 193 ~~~~ 196 (349)
T 1a2o_A 193 PGFT 196 (349)
T ss_dssp TTHH
T ss_pred CCcc
Confidence 9996
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.88 E-value=6.8e-22 Score=171.80 Aligned_cols=119 Identities=25% Similarity=0.404 Sum_probs=111.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 5899999999999999999999999999999999999999766 89999999999999999999999976555789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
++|+..+.+...++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988763
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.88 E-value=7e-22 Score=174.87 Aligned_cols=125 Identities=22% Similarity=0.404 Sum_probs=114.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|++.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+
T Consensus 2 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 2 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCc
Confidence 5678999999999999999999999999999999999999999876 89999999999999999999999985445789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||++|+..+.....+++++||++||.||++.++|...+++++++..
T Consensus 80 pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp CEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred cEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999998876543
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=8.5e-24 Score=190.41 Aligned_cols=117 Identities=15% Similarity=0.277 Sum_probs=104.8
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 27 ~m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
+|..+++|||||||++.++..+..+|+..||+|+ +|.|+.+|++++... .||+||+|+.||+|||++++++|++
T Consensus 3 ~m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~--- 77 (123)
T 2lpm_A 3 HMTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPSYPVADILAE--- 77 (123)
T ss_dssp CCCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCSHHHHHHHHH---
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHc---
Confidence 4666789999999999999999999999999986 899999999999876 8999999999999999999999997
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
.++|||++|++.+... +.++|+.+||.|||+.++|..+|.+++
T Consensus 78 -~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 78 -RNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp -TCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred -CCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 4689999999876543 457899999999999999998876653
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=5.8e-21 Score=165.14 Aligned_cols=116 Identities=28% Similarity=0.450 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++. .++|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ii 77 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREVRKK---YDMPII 77 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHTT---CCSCEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 5899999999999999999999999999999999999999876 89999999999999999999999864 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 78 ~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 78 MLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887764
No 7
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.86 E-value=1.9e-20 Score=164.15 Aligned_cols=125 Identities=23% Similarity=0.344 Sum_probs=115.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (132)
T 3crn_A 2 SLKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDMEGTELLEKAHKLR--PGMK 77 (132)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHC--TTSE
T ss_pred CccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhC--CCCc
Confidence 467999999999999999999999999999999999999999876 799999999999999999999999764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~ 159 (558)
||++|+..+.+...++++.||++||.||++.++|...++.++++.....
T Consensus 78 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~~ 126 (132)
T 3crn_A 78 KIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKEG 126 (132)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999887665443
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.85 E-value=1.9e-20 Score=163.57 Aligned_cols=122 Identities=22% Similarity=0.467 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
..++||||||++..+..+..+|...||. |..+.++.+|++.+... ..||+||+|+.||+++|++++++|++....+.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 4579999999999999999999999985 88999999999988754 269999999999999999999999975545789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||++|+..+.....+++++||++||.||++.++|...++.++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988763
No 9
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.85 E-value=4.7e-21 Score=178.87 Aligned_cols=125 Identities=16% Similarity=0.281 Sum_probs=114.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.|++++||||||++.++..|..+|...||+|..|.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~ 79 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQ--PD 79 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHC--TT
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcC--CC
Confidence 35678999999999999999999999999999999999999999765 799999999999999999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
+|||++|+..+.+...++++.||++||.||++.++|...|+.++.....
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 128 (184)
T 3rqi_A 80 ARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQA 128 (184)
T ss_dssp CEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888776543
No 10
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.85 E-value=5.6e-20 Score=162.34 Aligned_cols=128 Identities=20% Similarity=0.382 Sum_probs=116.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|++++||||||++..+..|..+|...||+|..+.++.+|++.+......||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 78 (143)
T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT--PHM 78 (143)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC--TTC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCC
Confidence 467899999999999999999999999999999999999999984223799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~ 159 (558)
|||++|+..+.+...++++.||++||.||++.++|...|+.++++.+...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~ 128 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLLM 128 (143)
T ss_dssp EEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776543
No 11
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.85 E-value=2.4e-20 Score=165.19 Aligned_cols=127 Identities=13% Similarity=0.301 Sum_probs=114.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|.|++++||||||++..+..|..+|...|+. |..+.++.+|++.+... .||+||+|+.||+++|++++++|++...
T Consensus 1 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 1 MSLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGA 78 (144)
T ss_dssp ----CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSST
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 5667899999999999999999999999876 88999999999999765 8999999999999999999999998444
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRRR 156 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~-~~eeL~~~L~~llr~~r 156 (558)
.+.+|||++|+..+.+...++++.||++||.||+ +.++|..+|+.++++..
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999 99999999999988754
No 12
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.85 E-value=4.3e-20 Score=160.01 Aligned_cols=120 Identities=15% Similarity=0.336 Sum_probs=111.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|+..+||||||++..+..+..+|...||.|..+.++.++++.+... .||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 76 (126)
T 1dbw_A 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLK--INI 76 (126)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTT--CCC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcC--CCC
Confidence 3567999999999999999999999999999999999999998765 799999999999999999999999754 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|||++|+..+.+...++++.||++||.||++.++|...++.+++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 77 PSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888764
No 13
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=2.8e-20 Score=163.91 Aligned_cols=119 Identities=22% Similarity=0.417 Sum_probs=107.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHh-----cCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNA-----EGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye-V~~Asdg~EALe~L~~-----~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
.++||||||++..+..+..+|...||. |..+.++.+|++.+.. . .||+||+|+.||+++|++++++|++..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~- 78 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGE--NYNMIFMDVQMPKVDGLLSTKMIRRDL- 78 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTC--CCSEEEECSCCSSSCHHHHHHHHHHHS-
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCC--CCCEEEEeCCCCCCChHHHHHHHHhhc-
Confidence 468999999999999999999988874 7899999999999876 4 799999999999999999999999742
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
.+.+|||++|+..+.+...++++.||++||.||++.++|...+++++.
T Consensus 79 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 256899999999999999999999999999999999999998877643
No 14
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.85 E-value=4.1e-20 Score=166.85 Aligned_cols=125 Identities=23% Similarity=0.437 Sum_probs=115.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++.+||||||++..+..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|+++++.|++....+.+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 4568999999999999999999999999999999999999999765 89999999999999999999999986545789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||++|+..+.+...+++++||++||.||++.++|...|+.++++.+
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp CEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887643
No 15
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.5e-20 Score=165.58 Aligned_cols=123 Identities=27% Similarity=0.450 Sum_probs=107.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh--cCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD--KELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~--~~~~ 107 (558)
.+.++||||||++..+..|..+|...||.|..+.++.+|++.+... .||+||+|+.||+++|++++++|+.. ...+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 4568999999999999999999999999999999999999999876 89999999999999999999999853 2236
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.+|||++|+..+.+...++++.||++||.||++.++|...+..+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999998887544
No 16
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.84 E-value=5.5e-20 Score=158.55 Aligned_cols=118 Identities=25% Similarity=0.378 Sum_probs=109.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+..+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMDGIEILKRMKVID--ENIR 77 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCCHHHHHHHHHHHC--TTCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHHhC--CCCC
Confidence 456999999999999999999999999999999999999999876 799999999999999999999999764 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
||++|+..+.+...++++.||++||.||++.++|...+++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred EEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887764
No 17
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.84 E-value=1.2e-19 Score=155.07 Aligned_cols=118 Identities=20% Similarity=0.396 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 4799999999999999999999999999999999999999876 799999999999999999999999754 689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++|+..+.....++++.||++||.||++.++|...+++++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888764
No 18
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.84 E-value=1.5e-19 Score=155.29 Aligned_cols=120 Identities=20% Similarity=0.395 Sum_probs=111.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|+..+||||||++..+..+..+|...||+|..+.++.++++.+... .||+||+|+.||+++|++++++|++. +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~ 75 (123)
T 1xhf_A 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGLLLARELREQ---ANV 75 (123)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHH---CCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhC---CCC
Confidence 3467999999999999999999998899999999999999999876 79999999999999999999999975 578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp EEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887754
No 19
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.84 E-value=1.9e-19 Score=161.73 Aligned_cols=124 Identities=22% Similarity=0.375 Sum_probs=116.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++.+||||||++..+..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|+... +.+|
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 88 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLARIHQQY--PSTT 88 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHHHHHhHC--CCCe
Confidence 467999999999999999999999999999999999999999876 899999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008655 111 VIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~G-A~DYL~KP~~~eeL~~~L~~llr~~r~~ 158 (558)
||++|+..+.+...++++.| |++||.||++.++|...|+.++++.+..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999 9999999999999999999998876543
No 20
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.84 E-value=9.9e-20 Score=157.46 Aligned_cols=122 Identities=21% Similarity=0.443 Sum_probs=111.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy-eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+.++||||||++..+..+..+|...|| .|..+.++.++++.+... .||+||+|+.||+++|++++++|++....+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457899999999999999999999898 688999999999998765 79999999999999999999999975445789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 21
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.83 E-value=2.5e-20 Score=161.35 Aligned_cols=122 Identities=18% Similarity=0.198 Sum_probs=110.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|++.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCC
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCC
Confidence 4568999999999999999999999999999999999999999876 79999999999999999999999986445889
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+... .+++..||++||.||++.++|...+.+.+..
T Consensus 79 ~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 9999999888777 8899999999999999999999999887654
No 22
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.83 E-value=7e-20 Score=160.74 Aligned_cols=122 Identities=13% Similarity=0.255 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~g--yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
++++||||||++..+..+..+|...+ +.|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~--~~ 77 (133)
T 3b2n_A 2 SLTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKH--LN 77 (133)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTT--CS
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHC--CC
Confidence 45799999999999999999999876 5567899999999999876 799999999999999999999999753 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+|||++|+..+.....++++.||++||.||++.++|...+++++++..
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 78 IKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred CcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999988876543
No 23
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.3e-19 Score=160.45 Aligned_cols=121 Identities=22% Similarity=0.403 Sum_probs=112.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|||
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~--~~~~ii 80 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMSGEDVLDWINQND--IPTSVI 80 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSBHHHHHHHHHHTT--CCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 4899999999999999999998899999999999999999876 799999999999999999999999753 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
++|+..+.+...++++.||++||.||++.++|...++.++++.+.
T Consensus 81 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 81 IATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876543
No 24
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.83 E-value=3.7e-20 Score=163.95 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=112.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKEL 106 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~ 106 (558)
|.+...+||||||++..+..|..+|...||+|..+.++.+|++.+... ..|||||+|+.||+ ++|++++++|++.
T Consensus 1 M~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~--- 76 (140)
T 3h5i_A 1 MSLKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQI--- 76 (140)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHH---
T ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhC---
Confidence 556778999999999999999999999999999999999999999762 27999999999995 9999999999974
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~ 158 (558)
+.+|||++|+..+.+...+++++||++||.||++.++|...|+.++++.+..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 77 SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999988888889999999999999999999999999998876543
No 25
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.83 E-value=3.5e-20 Score=163.27 Aligned_cols=122 Identities=19% Similarity=0.336 Sum_probs=113.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~ 108 (558)
.+.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+ ++|++++++|++.. +.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRG--FH 80 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTT--CC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCC--CC
Confidence 357999999999999999999999999999999999999998765 7999999999999 99999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+|||++|+..+.+...++++.||++||.||++.++|..+|++++....
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999887654
No 26
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.83 E-value=2e-19 Score=161.19 Aligned_cols=124 Identities=22% Similarity=0.354 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAE-----GSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~-----~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
..++||||||++..+..|..+|...|+ .|..+.++.+|++.+... ...||+||+|+.||+++|++++++|++.
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 357999999999999999999998876 788999999999998641 1269999999999999999999999985
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
...+.+|||++|+..+.+...++++.||++||.||++.++|...++.+++.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 434689999999999999999999999999999999999999999888653
No 27
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.83 E-value=5.2e-20 Score=161.95 Aligned_cols=125 Identities=18% Similarity=0.361 Sum_probs=113.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 458999999999999999999999999999999999999999876 799999999999999999999999843457899
Q ss_pred EEEEecCCCHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVV-KCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 111 VIVLSa~~d~e~a~-eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
||++|+..+..... ++++.||++||.||++.++|...|++++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999988777766 899999999999999999999999999876543
No 28
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=2.9e-19 Score=153.25 Aligned_cols=118 Identities=21% Similarity=0.421 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++..+..+..+|...||.|..+.++.++++.+... .||+||+|+.||+++|+++++.|++ . +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~-~--~~~~i 76 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRE-R--STVGI 76 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHT-T--CCCEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHh-c--CCCCE
Confidence 36899999999999999999999999999999999999999876 7999999999999999999999997 2 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 77 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888764
No 29
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.83 E-value=1.4e-19 Score=154.82 Aligned_cols=117 Identities=18% Similarity=0.405 Sum_probs=108.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.++||||||++..+..+..+|...||+ +..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKID--PNAK 77 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHC--TTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhC--CCCe
Confidence 368999999999999999999999999 45899999999999876 799999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
||++|+..+.....++++.||++||.||++.++|...+++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887653
No 30
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.83 E-value=1.2e-19 Score=159.09 Aligned_cols=123 Identities=20% Similarity=0.342 Sum_probs=115.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+++||||||++..+..|..+|...++.|..+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGG--AKPY 81 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTT--CCCE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 468999999999999999999999899999999999999999877 799999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
||++|+..+.+...+++++||++||.||++.++|...|++++++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999887654
No 31
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.83 E-value=1.9e-19 Score=153.27 Aligned_cols=116 Identities=31% Similarity=0.497 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+...|...||+|..+.++.++++.+... .||+||+|+.||+++|++++++|++. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDGLEVAKTIRKT---SSVPIL 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCCHHHHHHHHHhC---CCCCEE
Confidence 5899999999999999999999999999999999999999876 79999999999999999999999974 679999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999888764
No 32
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.83 E-value=2.2e-19 Score=160.76 Aligned_cols=125 Identities=18% Similarity=0.387 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-------cCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNA-------EGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~-------~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
++++||||||++..+..|..+|...|+ +|..+.++.+|++.+.. ....|||||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 358999999999999999999999998 89999999999999961 123799999999999999999999999
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+....+.+|||++|+..+.+...++++.||++||.||++.++|...|+++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 854458899999999999999999999999999999999999999999886544
No 33
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.7e-19 Score=176.13 Aligned_cols=122 Identities=22% Similarity=0.412 Sum_probs=114.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+.+++||||||++.++..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~ 96 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET--RPDAVILDVXMPGMDGFGVLRRLRADG--IDA 96 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHTT--CCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCC
Confidence 3568999999999999999999999999999999999999999877 799999999999999999999999864 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|||++|+..+.+...+++++||++||.||++.++|..+|+.++++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 97 PALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp CEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988754
No 34
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.83 E-value=1.1e-19 Score=157.92 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=105.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+...+||||||++..+..+..+|...||.|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRG--DQT 80 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTT--CCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcC--CCC
Confidence 4568999999999999999999999999999999999999999765 799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~-~~eeL~~~L~~llr~~ 155 (558)
|||++|+..+.+...++++.||++||.||+ +.++|...++.++.+.
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999 8899999998887643
No 35
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.82 E-value=2.8e-20 Score=195.07 Aligned_cols=119 Identities=19% Similarity=0.405 Sum_probs=112.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
+||||||++.++..|..+|...||+|..+.++.+|++.+... .|||||+|+.||+|||++++++|++.. +.+|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI~ 77 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIV 77 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETTTHHHHHHHHC--TTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEE
Confidence 799999999999999999999999999999999999999877 899999999999999999999999865 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 114 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 114 LSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+|++.+.+.+.+|++.||+|||.||++.++|...|++++....
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887653
No 36
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.82 E-value=1.7e-19 Score=161.49 Aligned_cols=124 Identities=20% Similarity=0.408 Sum_probs=112.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~g--yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
....+++||||||++..+..|..+|...+ +.|..+.++.+|++.+... .|||||+|+.||+++|+++++.|++..
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~- 92 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEK- 92 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTT-
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhC-
Confidence 34457899999999999999999999887 7888999999999999766 799999999999999999999999864
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+.+|||++|+..+.+...++++.||++||.||++.++|..+|++++++.
T Consensus 93 -~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 93 -LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp -CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999999999999999999887653
No 37
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.82 E-value=3.9e-20 Score=163.13 Aligned_cols=124 Identities=20% Similarity=0.341 Sum_probs=113.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHh-cCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~~Asdg~EALe~L~~-~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~ 107 (558)
++.+||||||++..+..|..+|.. .||+|..+.++.+|++.+.. . .|||||+|+.|| +++|++++++|++....+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~--~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD--SITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC--CCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC--CCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 367999999999999999999999 89999999999999999976 5 899999999999 999999999999833348
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
.+|||++|+..+.+...++++.||++||.||++.++|...|+.++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998876543
No 38
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.82 E-value=1.7e-19 Score=156.98 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=107.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++.+||||||++..+..+..+|. .+|+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 45799999999999999999998 889999999999999999876 799999999999999999999999865457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
||++|+..+... .++++.||++||.||++.++|...|+.++++..
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 999999888777 899999999999999999999999999987754
No 39
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.82 E-value=1.8e-19 Score=154.68 Aligned_cols=119 Identities=21% Similarity=0.381 Sum_probs=104.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 4899999999999999999999999999999999999999876 79999999999999999999999985445689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999888888999999999999999999999998887653
No 40
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.82 E-value=5.7e-20 Score=162.04 Aligned_cols=127 Identities=23% Similarity=0.390 Sum_probs=106.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|.+.+||||||++..+..|..+|... |.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.+
T Consensus 1 M~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 1 MSLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCC
Confidence 45689999999999999999999888 9999999999999999877 79999999999999999999999986544789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~ 159 (558)
|||++|+..+.+...++++.||++||.||++.++|...++.++++.+...
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 127 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
T ss_dssp CEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHHH
Confidence 99999999888888999999999999999999999999999998876654
No 41
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.82 E-value=2.5e-19 Score=157.83 Aligned_cols=128 Identities=22% Similarity=0.394 Sum_probs=115.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC--------CCceEEEEeCCCCCCCHHHHH
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEG--------SDIDLILAEVDLPMTKGLKML 97 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~--------~~PDLIILDi~MP~mDGlElL 97 (558)
+.+++.+||||||++..+..|..+|...|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|++++
T Consensus 2 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~ 81 (149)
T 1k66_A 2 VGNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVL 81 (149)
T ss_dssp BSCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHH
T ss_pred CCCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHH
Confidence 445678999999999999999999999998 8999999999999998510 279999999999999999999
Q ss_pred HHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 98 KYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 98 ~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
++|++....+.+|||++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999753336799999999999999999999999999999999999999999987654
No 42
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.82 E-value=1.9e-19 Score=178.75 Aligned_cols=126 Identities=21% Similarity=0.387 Sum_probs=115.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
..++||||||++.++..+...|...||.|..+.++.+|++.+... ..|||||+|+.||++||++++++|++......+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 357999999999999999999999999999999999999999764 2489999999999999999999999876556799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
||++|+..+.....+++++||+|||.||++.++|..+++++++..+.
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 99999999988999999999999999999999999999998876543
No 43
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.82 E-value=2.8e-19 Score=157.91 Aligned_cols=122 Identities=25% Similarity=0.375 Sum_probs=108.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+++||||||++..+..+..+|...||.|..+.++.+|++.+... .||+||+|+.||+++|++++++|+.....+.+|
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 79 (138)
T 3c3m_A 2 SLYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIP 79 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 457999999999999999999999999999999999999999876 799999999999999999999999754446899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||++|+..+......++..||++||.||++.++|...++.++.+
T Consensus 80 ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 80 VLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 99999987766566667777899999999999999998887653
No 44
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.82 E-value=3.8e-19 Score=155.71 Aligned_cols=123 Identities=19% Similarity=0.372 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+||||||++..+..|..+|...||+|..+.++.+|+..+... ..||+||+|+.||+++|++++++|++.. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASE-RAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCC
Confidence 368999999999999999999999999999999999999999875 2499999999999999999999999752 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
||++|+..+.+...++++.||++||.||++.++|...|++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999998887654
No 45
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.82 E-value=1.5e-19 Score=156.58 Aligned_cols=120 Identities=20% Similarity=0.390 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy-eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+++||||||++..+..+..+|...|| .|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 47899999999999999999998898 788999999999999875 799999999999999999999998754347899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
||++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888764
No 46
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=3.4e-19 Score=157.58 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=111.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
.++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|+.. ..+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~---~~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNV---TTCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEEHHHHHHHHHTT---CCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccC---CCCCE
Confidence 57999999999999999999999899999999999999999876 79999999999999999999999974 37899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 47
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.82 E-value=5.1e-19 Score=155.11 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=112.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~-~gye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
++++||||||++..+..|..+|.. .||+ |..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 468999999999999999999998 8999 88999999999999876 7999999999999999999999998434578
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+|||++|+..+.....++++.||++||.||++.++|...|+.++++.
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999887653
No 48
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.82 E-value=2.6e-19 Score=158.80 Aligned_cols=125 Identities=18% Similarity=0.317 Sum_probs=114.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++....+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 4568999999999999999999999999999999999999999877 79999999999999999999999974345789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||++|+..+.+...++++.||++||.||++..+|...|+.++++.+
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887543
No 49
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=6e-19 Score=153.41 Aligned_cols=125 Identities=24% Similarity=0.369 Sum_probs=113.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC-----CCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEG-----SDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~-----~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
+.+||||||++..+..|..+|...|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|++++++|++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 8999999999999997510 2799999999999999999999999854
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
..+.+|||++|+..+.+...++++.||++||.||++.++|...+++++++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 3367999999999999999999999999999999999999999999877643
No 50
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.81 E-value=6.8e-19 Score=154.85 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-----cCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNA-----EGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~-----~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
++++||||||++..+..+..+|...|+ .|..+.++.+|++.+.. . .|||||+|+.||+++|++++++|++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGR--WPSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSC--CCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCC--CCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 468999999999999999999999998 88999999999999987 5 79999999999999999999999983
Q ss_pred c--CCCCceEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 104 K--ELQRIPVIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 104 ~--~~~~iPVIVLSa~~d~e~a~eAL~~G-A~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
. ..+.+|||++|+..+.+...+++..| |++||.||++.++|...|++.+..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 2 34789999999999999999999999 999999999999999999887643
No 51
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=4.5e-19 Score=151.15 Aligned_cols=117 Identities=24% Similarity=0.377 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++..+..+..+|...||+|..+.++.+++..+... .||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~---~~~~~ii 76 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQ---WSAVPVI 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEEHHHHHHHHHT---TCCCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHh---CCCCcEE
Confidence 6899999999999999999999999999999999999998776 7999999999999999999999984 2679999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887754
No 52
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.81 E-value=1.3e-19 Score=159.35 Aligned_cols=127 Identities=22% Similarity=0.331 Sum_probs=115.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.+++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++....+.
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 81 (142)
T 3cg4_A 4 AEHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILDNSLEQG 81 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHHTTCCTT
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCC
Confidence 34678999999999999999999999999999999999999999876 7999999999999999999999998434478
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
+|||++|+..+.+...++++.||++||.||++.++|...|+.++++.+.
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 82 IAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999988878888999999999999999999999999999876553
No 53
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.81 E-value=4.2e-19 Score=154.54 Aligned_cols=120 Identities=18% Similarity=0.357 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++||||||++..+..+..+|... ||.++ .+.++.+|++.+... .||+||+|+.||+++|++++++|++. ..+.+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~~ 78 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLDGLAVLERIRAG-FEHQP 78 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHH-CSSCC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhc-CCCCC
Confidence 368999999999999999999987 88876 899999999999876 79999999999999999999999974 13678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 79 NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999887643
No 54
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.81 E-value=9.2e-19 Score=156.82 Aligned_cols=125 Identities=14% Similarity=0.283 Sum_probs=113.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
++.+||||||++..+..|..+|.. +|+|..+.++.+|++.+... ..+||||+|+.||+++|++++++|+... +.+|
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 78 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGMEGTEVIQKARLIS--PNSV 78 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSCHHHHHHHHHHHC--SSCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCcE
Confidence 467999999999999999999976 89999999999999999875 1359999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHHhh
Q 008655 111 VIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRRMLG 159 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~G-A~DYL~KP~~~eeL~~~L~~llr~~r~~~ 159 (558)
||++|+..+.+...++++.| |++||.||++.++|...|..++++.+...
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~~ 128 (151)
T 3kcn_A 79 YLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLVT 128 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999988765543
No 55
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.81 E-value=2.9e-19 Score=161.75 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=111.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.+++++||||||++..+..|..+|...||+|. .+.++.+|++.+......|||||+|+.||+++|++++++|++.. +
T Consensus 33 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~--~ 110 (157)
T 3hzh_A 33 TGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD--K 110 (157)
T ss_dssp TTEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC--T
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC--C
Confidence 34568999999999999999999999999988 99999999999976422589999999999999999999999865 7
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
.+|||++|+..+.+...+++++||++||.||++..+|...|+.++
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999988765
No 56
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.81 E-value=1.4e-19 Score=157.64 Aligned_cols=120 Identities=16% Similarity=0.300 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+++||||||++..+..+..+|...||.+. .+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~ 76 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGI 76 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT--CCSE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHhcC--CCCe
Confidence 37999999999999999999999999988 899999999999877 899999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
||++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 77 IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred EEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999888999999999999999999999999999887543
No 57
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.81 E-value=1.2e-18 Score=156.36 Aligned_cols=125 Identities=14% Similarity=0.345 Sum_probs=115.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGEVFLEQVAKSY--PDI 80 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSCHHHHHHHHHHHC--TTS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhC--CCC
Confidence 4678999999999999999999999999999999999999999765 799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 008655 110 PVIMMSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~G-A~DYL~KP~~~eeL~~~L~~llr~~r~~ 158 (558)
|||++|+..+.....++++.| |++||.||++..+|...|+.++++.+..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~~ 130 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLR 130 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999998776543
No 58
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.81 E-value=5.4e-19 Score=154.34 Aligned_cols=119 Identities=28% Similarity=0.444 Sum_probs=110.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
..+||||||++..+..+..+|...||+|..+.++.++++.+... .||+||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLDGIEVCKQLRQQK--LMFPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHcCC--CCCCE
Confidence 46899999999999999999999999999999999999999876 799999999999999999999999864 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++|+..+......+++.||++||.||++.++|...++.++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 79 LMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999988887888999999999999999999999999887754
No 59
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.81 E-value=6.7e-19 Score=154.19 Aligned_cols=122 Identities=25% Similarity=0.409 Sum_probs=112.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHHhhc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDK 104 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~~Ir~~~ 104 (558)
|++++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.|| +++|++++++|++..
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 1 MSLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 4578999999999999999999999999999999999999999876 799999999999 999999999999864
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+.+|||++|+..+.+...++++.||++||.||++..+|...|+.++++.
T Consensus 79 --~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 79 --RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp --TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred --cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999998887543
No 60
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.81 E-value=4.2e-19 Score=187.12 Aligned_cols=161 Identities=18% Similarity=0.307 Sum_probs=131.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++.++..+..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVNGLEILKWIKERS--PETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Confidence 4799999999999999999998899999999999999999876 799999999999999999999999864 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhh---hhccccccccccCCCC----------C
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAE---KNILSYDFDLVASDPS----------D 179 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~~~l~~---r~~~~~~~~lvgssp~----------~ 179 (558)
++|++.+.+.+.++++.||+|||.||++.++|...+.++++..++..... .........+++.++. .
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~ 156 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKI 156 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654322110 0000001124444432 3
Q ss_pred CCCCcceeeecCCccccc
Q 008655 180 ANTNSTTLFSDDTDDKSR 197 (558)
Q Consensus 180 a~s~~tvLi~ges~~~~~ 197 (558)
+..+.++++.|++++.+.
T Consensus 157 a~~~~~vli~Ge~GtGK~ 174 (387)
T 1ny5_A 157 SCAECPVLITGESGVGKE 174 (387)
T ss_dssp TTCCSCEEEECSTTSSHH
T ss_pred cCCCCCeEEecCCCcCHH
Confidence 456677888888887554
No 61
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.80 E-value=3.4e-20 Score=162.82 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~g-yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.+.+||||||++..+..|..+|...| |+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 35799999999999999999999999 9999999999999998665 899999999999999999999999865 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+.+...++++.||++||.||++.++|...++++++.
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999998877643
No 62
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.80 E-value=1e-19 Score=156.85 Aligned_cols=120 Identities=28% Similarity=0.411 Sum_probs=110.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+.+||||||++..+..+..+|...||+|..+.++.++++.+... .||+||+|+.||+++|++++++|++....+.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 36899999999999999999999999999999999999988654 7999999999999999999999997543468999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
|++|+..+.+...++++.||++||.||++.++|...++.+++
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 999999988899999999999999999999999999988765
No 63
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.80 E-value=1.3e-18 Score=151.26 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=105.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++......++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 357999999999999999999999999999999999999999876 899999999999999999999999764334566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
||+++..... ...++++.||++||.||++.++|...|++....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 6666665555 788999999999999999999999999887654
No 64
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.80 E-value=6.4e-19 Score=157.89 Aligned_cols=124 Identities=17% Similarity=0.309 Sum_probs=112.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|.+++++||||||++..+..|..+|.. .||+|. .+.++.+|++.+... .||+||+|+.||+++|++++++|++..
T Consensus 1 m~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~- 77 (153)
T 3cz5_A 1 MSLSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWD- 77 (153)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHC-
T ss_pred CCCcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhC-
Confidence 556789999999999999999999998 799988 899999999999876 799999999999999999999999864
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+.+|||++|+..+.+...++++.||++||.||++.++|...|+.++++.
T Consensus 78 -~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 78 -GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp -TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred -CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999999999999999999998887643
No 65
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.80 E-value=5.7e-19 Score=168.61 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=109.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhc-----------CCCceEEEEeCCCCCCCHHHH
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSY-QVTSVRSPRQVIDALNAE-----------GSDIDLILAEVDLPMTKGLKM 96 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gy-eV~~Asdg~EALe~L~~~-----------~~~PDLIILDi~MP~mDGlEl 96 (558)
.+...+||||||++.++..|..+|...|| .|..+.++.+|++.+... ...|||||+|+.||+++|+++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 34568999999999999999999999998 899999999999999752 126999999999999999999
Q ss_pred HHHHHhhcC--CCCceEEEEecCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 97 LKYITRDKE--LQRIPVIMMSAQD-EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 97 L~~Ir~~~~--~~~iPVIVLSa~~-d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
+++|++... .+.+|||++|+.. +.+...++++.||++||.||++ +|...|+.++++.+.
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 999997521 2789999999988 7788999999999999999999 888888888766543
No 66
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.80 E-value=4.4e-19 Score=174.43 Aligned_cols=121 Identities=28% Similarity=0.458 Sum_probs=111.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.|.+++||||||++.++..|..+|...||.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++. +.
T Consensus 34 ~m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~~---~~ 108 (249)
T 3q9s_A 34 RMNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFDGGDVVQRLRKN---SA 108 (249)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHTT---CC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHcC---CC
Confidence 34568999999999999999999999999999999999999999876 79999999999999999999999973 68
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|||++|+..+.+...+++++||++||.||++.++|..+|+.++++
T Consensus 109 ~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 109 LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887653
No 67
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.80 E-value=3.1e-19 Score=158.45 Aligned_cols=121 Identities=16% Similarity=0.253 Sum_probs=111.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHh--cCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNA--EGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~g-yeV~~Asdg~EALe~L~~--~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
....+||||||++..+..|..+|...| |+|..+.++.+++..+.. . .|||||+|+.||+++|++++++|+...
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~-- 93 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLD--AFDILMIDGAALDTAELAAIEKLSRLH-- 93 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHT--TCSEEEEECTTCCHHHHHHHHHHHHHC--
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCC--CCCEEEEeCCCCCccHHHHHHHHHHhC--
Confidence 357899999999999999999999988 999999999988887754 4 799999999999999999999999864
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+.+|||++|+..+.+...++++.||++||.||++.++|...|++++++
T Consensus 94 ~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 94 PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999999999888754
No 68
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.80 E-value=1.7e-18 Score=151.67 Aligned_cols=123 Identities=14% Similarity=0.274 Sum_probs=113.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~ 107 (558)
+.+++||||||++..+..|..+|...||+|. .+.++.+|++.+... .||+||+|+.|| +++|+++++.|++. +
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~---~ 81 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALDGVETAARLAAG---C 81 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHH---S
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhC---C
Confidence 3468999999999999999999999999999 699999999999877 799999999999 79999999999985 6
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
.+|||++|+..+.....++++.||++||.||++.++|...++.++++...
T Consensus 82 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 82 NLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp CCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 79999999999999999999999999999999999999999998876544
No 69
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.80 E-value=4.3e-19 Score=167.19 Aligned_cols=122 Identities=17% Similarity=0.415 Sum_probs=112.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ 78 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAIS--DGIP 78 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 457999999999999999999999999999999999999998655 799999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
||++|+..+.+...++++.||++||.||++.++|...++.++++..
T Consensus 79 ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp EEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 9999999888888999999999999999999999999999887643
No 70
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.80 E-value=3.2e-19 Score=186.14 Aligned_cols=123 Identities=26% Similarity=0.475 Sum_probs=108.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|.+++.+||||||++.++..|..+|+..||+|..+.++.+|++.+... .|||||+|+.||+|||++++++|++.. +
T Consensus 1 M~~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~--~ 76 (394)
T 3eq2_A 1 MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDGLELIRRIRQTA--S 76 (394)
T ss_dssp ---CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCTHHHHHHHHHTT--C
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHHhhC--C
Confidence 455678999999999999999999999999999999999999999876 799999999999999999999999864 7
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRR 154 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~-~~eeL~~~L~~llr~ 154 (558)
.+|||++|+..+.+...++++.||+|||.||+ ..++|...+.+++++
T Consensus 77 ~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 77 ETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp CCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999 578888888777654
No 71
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=1.1e-19 Score=184.02 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=108.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~~i 109 (558)
..+||||||++.++..+..+|+..||+|. .|.||.+|++.+... .|||||+|+.|| +|||+++++.|++.. ++
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~ 234 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDAVKDILGRM---DV 234 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTTTHHHHHHT---TC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHHHHHHHhcC---CC
Confidence 46899999999999999999999999999 999999999999876 899999999999 899999999999863 89
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|||++|+..+ ...+++++||++||.||++.++|...|..++...
T Consensus 235 piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 235 PVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp CEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9999999853 4677999999999999999999999999988654
No 72
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.80 E-value=9.1e-19 Score=154.35 Aligned_cols=120 Identities=22% Similarity=0.362 Sum_probs=111.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+ ||+++|+++++.|++.. +.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~--~~~pi 78 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEF--PDTKV 78 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHC--TTCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHC--CCCCE
Confidence 57999999999999999999999999999999999999999775 899999999 99999999999999864 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|++|+..+.+...++++.||++||.||++.++|...++.++++.+
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 79 AVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999998876543
No 73
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.79 E-value=1e-18 Score=149.42 Aligned_cols=121 Identities=18% Similarity=0.358 Sum_probs=109.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~~ 108 (558)
|++++||||||++..+..+...|...||+|..+.++.+|++.+... .||+||+|+.|| +++|++++++|++....+.
T Consensus 3 mm~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 3 HMSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKN 80 (127)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCCHHHHHHHHhcCccccC
Confidence 3457999999999999999999999999999999999999999876 799999999999 9999999999998643578
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+|||++ +..+.+...++++.||++||.||++..+|...++++++
T Consensus 81 ~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999999 88888888999999999999999999999999887653
No 74
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.6e-18 Score=155.07 Aligned_cols=123 Identities=21% Similarity=0.308 Sum_probs=111.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY-Q-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy-e-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.+.+||||||++..+..|..+|...|+ . |..+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~--~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYE--LP 89 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT--CS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 468999999999999999999998884 3 45899999999999877 799999999999999999999999864 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
+|||++|+..+.+...+++++||++||.||++.++|..+|..++++...
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 9999999999999999999999999999999999999999998876443
No 75
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.79 E-value=1.2e-18 Score=165.88 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=112.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~i 77 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHDGWEILKSMRESG--VNTPV 77 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 46999999999999999999999999999999999999999876 799999999999999999999999864 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 78 LMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp EEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999887654
No 76
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.79 E-value=1.9e-18 Score=163.85 Aligned_cols=120 Identities=24% Similarity=0.338 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~-gyeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.+++||||||++.++..+..+|... +|.| ..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKS--LS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSCHHHHHHHHHHSC--CC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 3579999999999999999999987 4887 6899999999999876 799999999999999999999999854 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|||++|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999888754
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.79 E-value=1.9e-18 Score=170.51 Aligned_cols=123 Identities=22% Similarity=0.361 Sum_probs=114.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
...++||||||++..+..+..+|...||+|..+.++.+|++.+... .||+||+|+.||+|+|++++++|++.. +.+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~ 202 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLG--LTL 202 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCCHHHHHHHHHHH--CCS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CCC
Confidence 4568999999999999999999999999999999999999999876 799999999999999999999999865 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||++|+..+.+...++++.||++||.||++.++|...+.+++++.+
T Consensus 203 piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 203 PVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998887654
No 78
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.79 E-value=6.5e-19 Score=149.75 Aligned_cols=114 Identities=19% Similarity=0.376 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+...|...||+|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii 77 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKK--KDAKII 77 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHccC--CCCeEE
Confidence 5899999999999999999999999999999999999999876 799999999999999999999999864 689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
++|+..+.. .++++.||.+||.||++.++|...+++++
T Consensus 78 ~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 999876654 67889999999999999999998887653
No 79
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.79 E-value=7.6e-19 Score=156.24 Aligned_cols=121 Identities=17% Similarity=0.318 Sum_probs=103.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVK--CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~--~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
+++||||||++..+..+..+|.. .+|.+. .+.++.++++.+... .||+||+|+.||+++|++++++|++.. +.
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~--~~ 77 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLY--PD 77 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHC--TT
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CC
Confidence 46999999999999999999973 578777 999999999998765 799999999999999999999999754 78
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+|||++|+..+.+...++++.||.+||.||++.++|...++.+++...
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 78 CSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp CEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999888888899999999999999999999999998876543
No 80
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=1.5e-18 Score=163.72 Aligned_cols=120 Identities=19% Similarity=0.376 Sum_probs=111.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+.+||||||++..+..|..+|...||+|. .+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. ...|
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~g~~~~~~l~~~---~~~p 87 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRDGIDAASEIASK---RIAP 87 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHT---TCSC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCChHHHHHHHHhc---CCCC
Confidence 46999999999999999999999999988 999999999999876 79999999999999999999999975 3459
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
||++|+..+.+...++++.||++||.||++.++|...|+.++++.+
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 81
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.79 E-value=2.2e-18 Score=151.07 Aligned_cols=120 Identities=20% Similarity=0.355 Sum_probs=105.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC---C
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL---Q 107 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~---~ 107 (558)
..++||||||++..+..+..+|...||+|..+.++.+|++.+... +|+||+|+.||+++|++++++|++.... .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999999999999999999988543 4999999999999999999999853211 1
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
..+||++|+..+.....++++.||++||.||++.++|...++.+++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 2358889999999999999999999999999999999998887654
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.79 E-value=5.2e-18 Score=149.56 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+..+|... |+|..+.++.+|++.+... .||+||+|+.||+++|++++++|+... +.+|||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii 76 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRTGVDFLTEVRERW--PETVRI 76 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEE
Confidence 47999999999999999999875 9999999999999999876 799999999999999999999999764 678999
Q ss_pred EEecCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRL-GAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~-GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
++|+..+.....+++.. ||++||.||++.++|...++.+++...
T Consensus 77 ~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 77 IITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp EEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999888888899876 599999999999999999998877544
No 83
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.78 E-value=2.2e-18 Score=151.75 Aligned_cols=120 Identities=25% Similarity=0.356 Sum_probs=107.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc----CCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAE----GSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~----~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
++++||||||++..+..|..+|...|+ .|..+.++.+|++.+... ...|||||+|+.||+++|+++++.|++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 468999999999999999999999887 899999999999999851 02799999999999999999999999754
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
..+.+|||++|+..+.+...++++.||++||.||++.++|..++..
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 3368999999999999999999999999999999999999887554
No 84
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.78 E-value=3.2e-18 Score=153.69 Aligned_cols=122 Identities=20% Similarity=0.443 Sum_probs=113.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
.++||||||++..+..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~--~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALD--PDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHC--TTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 57999999999999999999999999999999999999998765 799999999999999999999999864 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
|++|+..+.+...++++.||++||.||++..+|...++.++++.+.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877654
No 85
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.78 E-value=3.5e-18 Score=181.05 Aligned_cols=123 Identities=23% Similarity=0.341 Sum_probs=114.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++.++..|..+|...||.|..+.++.+|++.+... .|||||+|+.||+|+|++++++|++....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4899999999999999999999999999999999999999876 79999999999999999999999985445689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
++|+..+.+...+++++||++||.||++..+|...++.+++....
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 124 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLV 124 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998876544
No 86
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.78 E-value=3.4e-18 Score=156.32 Aligned_cols=121 Identities=19% Similarity=0.335 Sum_probs=95.8
Q ss_pred CCCCCCCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 008655 18 GNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCS-YQ-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK 95 (558)
Q Consensus 18 ~~~~~~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~g-ye-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlE 95 (558)
++......+.|.+++++||||||++..+..|..+|...+ +. |..+.++.+|++.+... .|||||+|+.||+++|++
T Consensus 11 ~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~ 88 (164)
T 3t8y_A 11 SSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLNGIE 88 (164)
T ss_dssp -------------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHH
T ss_pred cCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCCHHH
Confidence 333445667777788999999999999999999999874 44 44899999999999877 799999999999999999
Q ss_pred HHHHHHhhcCCCCceEEEEecCCCH--HHHHHHHHcCCCEEEeCCCCHHH
Q 008655 96 MLKYITRDKELQRIPVIMMSAQDEV--SVVVKCLRLGAADYLVKPLRTNE 143 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~~d~--e~a~eAL~~GA~DYL~KP~~~ee 143 (558)
++++|++.. + +|||++++..+. ..+.++++.||++||.||++..+
T Consensus 89 l~~~lr~~~--~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 135 (164)
T 3t8y_A 89 ALKLIMKKA--P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSIS 135 (164)
T ss_dssp HHHHHHHHS--C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSC
T ss_pred HHHHHHhcC--C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHH
Confidence 999999864 3 899999987664 36779999999999999999433
No 87
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.78 E-value=1.4e-18 Score=166.22 Aligned_cols=122 Identities=25% Similarity=0.417 Sum_probs=112.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+..++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++.. +.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~--~~~ 80 (233)
T 1ys7_A 5 VTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLDGVSVVTALRAMD--NDV 80 (233)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSCHHHHHHHHHHTT--CCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCC
Confidence 3457999999999999999999999999999999999999999876 799999999999999999999999854 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|||++|+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 81 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp CEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999988888889999999999999999999999999988764
No 88
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.77 E-value=1e-17 Score=147.80 Aligned_cols=123 Identities=16% Similarity=0.358 Sum_probs=106.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
...+++||||||++..+..|..+|... ++.++ .+.++.+|++.+... .|||||+|+.||+++|+++++.|++..
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~-- 81 (143)
T 2qv0_A 6 SGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLDGVLLAQNISQFA-- 81 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSCHHHHHHHHTTST--
T ss_pred CCCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHccC--
Confidence 345689999999999999999999876 78854 899999999999876 799999999999999999999999753
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
+.+|||++|+..+ ...++++.||++||.||++.++|...|+++++..+.
T Consensus 82 ~~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 82 HKPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp TCCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 5678999998744 577899999999999999999999999998876543
No 89
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.77 E-value=2.1e-18 Score=166.93 Aligned_cols=121 Identities=26% Similarity=0.462 Sum_probs=110.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|++++++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++. .
T Consensus 1 M~~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~~~~~lr~~---~ 75 (238)
T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRVLRAD---S 75 (238)
T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHTT---C
T ss_pred CCcccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhC---C
Confidence 444567999999999999999999999999999999999999999876 79999999999999999999999974 4
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
.+|||++|+..+.....++++.||++||.||++.++|...|+.+++
T Consensus 76 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 76 GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7999999999888888999999999999999999999998887654
No 90
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.77 E-value=9.5e-18 Score=145.37 Aligned_cols=122 Identities=18% Similarity=0.282 Sum_probs=109.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKEL 106 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~ 106 (558)
|+|++++||||||++..+..|..+|...||+|..+.++.+|++.+... ..||+||+|+.||+ ++|++++++|++..
T Consensus 1 m~m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~-- 77 (132)
T 2rdm_A 1 MSLEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREID-- 77 (132)
T ss_dssp -CCSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHC--
T ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcC--
Confidence 567889999999999999999999999999999999999999999753 26999999999997 99999999999864
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+.+|||++|+..+.+...+++..| +||.||++.++|...|++++..
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 78 PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 689999999998888777887776 8999999999999999887654
No 91
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.77 E-value=1.9e-18 Score=154.67 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=100.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SY-QVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gy-eV~~Asdg~EALe~L~~-~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
|++++||||||++..+..|..+|... |+ .|..+.++.+|++.+.. . .||+||+|+.||+++|+++++.|++..
T Consensus 1 M~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~-- 76 (154)
T 2qsj_A 1 MSLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFD-- 76 (154)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTC--CCSEEEECC------CHHHHHHHHHHC--
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhC--
Confidence 45689999999999999999999987 88 67899999999999987 5 799999999999999999999999864
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+.+|||++|+..+.+...++++.||.+||.||++.++|...|+.++++.
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 7899999999988889999999999999999999999999998887543
No 92
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.76 E-value=2.4e-18 Score=149.40 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=106.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|++.+||||||++..+..+..+|...++.|..+.++.++++.+.. .||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 M~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~---~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 75 (135)
T 3eqz_A 1 MSLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN---KQDIIILDLMMPDMDGIEVIRHLAEHK--SPA 75 (135)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC---TTEEEEEECCTTTTHHHHHHHHHHHTT--CCC
T ss_pred CCcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc---CCCEEEEeCCCCCCCHHHHHHHHHhCC--CCC
Confidence 457899999999999999999999888899999999999988743 399999999999999999999999864 789
Q ss_pred eEEEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEV-----SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~-----e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+. +...++++.||++||.||++.++|...|++++..
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 76 SLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred CEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 99999998874 6777899999999999999999999998887543
No 93
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=4.8e-18 Score=162.41 Aligned_cols=118 Identities=27% Similarity=0.441 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~i 78 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMSGTDVCKQLRAR---SSVPV 78 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHH---CSCSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHcC---CCCCE
Confidence 47999999999999999999999999999999999999999876 79999999999999999999999984 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 79 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 79 IMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999998888899999999999999999999999999888754
No 94
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.75 E-value=7.6e-18 Score=171.98 Aligned_cols=119 Identities=26% Similarity=0.354 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~-~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
..+||||||++.++..|..+|.. .||+|..+.++.+|++.+... .|||||+|+.||+|||++++++|+.....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 46799999999999999999964 589999999999999999876 799999999999999999999999754457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
||++|+..+.+...+++++||+|||.||++..+|...++.++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887764
No 95
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.75 E-value=1.4e-17 Score=158.39 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=108.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+++||||||++.++..|..+|...| .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~i 74 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETR--PETWV 74 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 4799999999999999999999888 888999999999987 3 799999999999999999999999864 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 112 IMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|++|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 75 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 75 ILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988765
No 96
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.74 E-value=4.2e-17 Score=143.08 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=107.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC-C
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ-R 108 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~-~ 108 (558)
....+||||||++..+..|..+|...||+|..+.++.+|++.+... .||+|| ||+++|+++++.|+.. + .
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~~~~g~~~~~~l~~~---~~~ 86 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEK---HSS 86 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----ECSTTHHHHHHHHHHH---STT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----EcCccHHHHHHHHHhc---CCC
Confidence 4568999999999999999999999999999999999999999876 799999 8999999999999985 5 7
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~-~~eeL~~~L~~llr~ 154 (558)
+|||++|+..+.+...++++.||++||.||+ +.++|...|+.++++
T Consensus 87 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 87 IVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 999999998887654
No 97
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.7e-18 Score=164.41 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g-yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++||||||++.++..|..+|...| |.++ .+.++.+|++.+... .||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~ 76 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGNGIELCRDLLSRM--PDL 76 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEEHHHHHHHHHHHC--TTC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--CCC
Confidence 3799999999999999999999886 8855 899999999999876 799999999999999999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
|||++|+..+.+...++++.||++||.||++.++|...++.++++..
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 77 RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999887643
No 98
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=1.6e-17 Score=147.49 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=96.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
...+||||||++..+..|..+|... ||.++ .+.++.+|++.+... ..|||||+|+.||+++|++++++|+... .
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~---~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRHAKLKT---R 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC-TTCCEEEECTTSCCCTTCHHHHHHHHHC---C
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC---C
Confidence 5689999999999999999999988 88865 899999999999764 2699999999999999999999999863 4
Q ss_pred ceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 109 IPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 109 iPVIVLSa--~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
+|||++++ ..+.+...++++.||++||.||++..+|...++.
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~ 131 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKT 131 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CT
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHH
Confidence 89999997 5666778899999999999999997766655433
No 99
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.7e-17 Score=146.41 Aligned_cols=120 Identities=19% Similarity=0.336 Sum_probs=102.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc---CCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK---ELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~---~~~~ 108 (558)
.++||||||++..+..+..+|...|+.|..+.++.+|++.+... .||+||+|+.||+++|++++++|++.. ..+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 46999999999999999999998899999999999999999876 799999999999999999999998641 1367
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+|||++|+........ +.||++||.||++.++|...|+.++.+..
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 8999999865533222 78999999999999999999988876543
No 100
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.73 E-value=1e-17 Score=176.09 Aligned_cols=122 Identities=17% Similarity=0.295 Sum_probs=107.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
|++++||||||++.++..+..+|.. .+++|..|.++.+|++.+... ..|||||+|+.||+|||++++++|+... +.
T Consensus 1 M~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~--~~ 77 (400)
T 3sy8_A 1 MNDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSG--KV 77 (400)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHT--CE
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 4568999999999999999999988 578999999999999999862 1799999999999999999999999864 56
Q ss_pred ceEEEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEV-----SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 109 iPVIVLSa~~d~-----e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++||++|+..+. ..+.+++++||.+||.||++.++|...+.+++..
T Consensus 78 ~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~ 128 (400)
T 3sy8_A 78 HSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNAR 128 (400)
T ss_dssp EEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHh
Confidence 677777777765 6788999999999999999999999999888654
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.73 E-value=2.6e-17 Score=138.13 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=104.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
.+||||||++..+..+...|...||+|..+.++.++++.+... .||+||+|+.||+++|+++++.|++....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 5899999999999999999999999999999999999999877 79999999999999999999999986444789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
++|+..+.. ++++.|+.+||.||++..+|...+++++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 999877655 8999999999999999999988876543
No 102
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.72 E-value=4.2e-18 Score=163.46 Aligned_cols=121 Identities=7% Similarity=0.031 Sum_probs=105.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHH-HHhcCCCceEEEEeCCCCCCCHHHHHHHHHh-hcCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDA-LNAEGSDIDLILAEVDLPMTKGLKMLKYITR-DKEL 106 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~Asdg~EALe~-L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~-~~~~ 106 (558)
.+++||||||++.++..|..+|.. .||+|. .+.++.+++.. +... .|||||+|+.||+++|++++++|++ ..
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~-- 81 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISC-- 81 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHC--
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhC--
Confidence 468999999999999999999984 689886 45566666654 5544 7999999999999999999999997 43
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+.+|||++|+..+......+++.||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 7899999999998888999999999999999999999999999887653
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.72 E-value=1.8e-19 Score=153.92 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=110.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
|...+||||||++..+..+..+|...||+|..+.++.++++.+... .||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (124)
T 1dc7_A 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRH--PML 76 (124)
T ss_dssp CCCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHC--TTS
T ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhC--CCC
Confidence 3457899999999999999999998899999999999999998655 799999999999999999999999764 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||++|+..+.+...++++.||++||.||++.++|...++.++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 77 PVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp CCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 999999988888888999999999999999999999999887754
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.71 E-value=3.5e-17 Score=153.24 Aligned_cols=117 Identities=13% Similarity=0.260 Sum_probs=104.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+..++||||||++..+..|..+|...||+|..+.++.+|+ .. .|||||+|+.||+++|+ +++.++... +.+
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~~--~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~ 80 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DV--PVDVVFTSIFQNRHHDE-IAALLAAGT--PRT 80 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SS--CCSEEEEECCSSTHHHH-HHHHHHHSC--TTC
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----CC--CCCEEEEeCCCCccchH-HHHHHhccC--CCC
Confidence 3467999999999999999999998899999888887766 23 79999999999999999 888888643 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
|||++|+..+.+...++++.||++||.||++..+|...++.++...
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 81 TLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877654
No 105
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.69 E-value=4.1e-17 Score=143.34 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=102.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA-EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~-~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.+...+||||||++..+..+..+|...||+|..+.++.+|++.+.. . .||+||+|+.||+++|++++++|++. .+
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~l~~~--~~ 87 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDIVKEQ--TK 87 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG--SCSEEEEETTCTTSCHHHHHHHHTTS--SS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHHHHhh--CC
Confidence 3457899999999999999999999999999999999999999977 6 79999999999999999999999974 37
Q ss_pred CceEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 108 RIPVIMMS-AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 108 ~iPVIVLS-a~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
.+|||++| +..+... .+++ |++||.||++.++|...++.+++
T Consensus 88 ~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 88 QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 89999999 8766555 5666 99999999999999998877654
No 106
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.68 E-value=3e-16 Score=149.57 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=105.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++||||||++.++..|..+|...||+|..+.++.+|++.+... .||+|| ||+++|+++++.|++. ...+|||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~--~~~~~ii 72 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEK--HSSIVVL 72 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHH--CTTSEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhC--CCCCcEE
Confidence 4799999999999999999999999999999999999999765 799999 9999999999999985 2389999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRR 154 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~-~~eeL~~~L~~llr~ 154 (558)
++|+..+.+...+++++||++||.||+ +.++|...++.++++
T Consensus 73 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 73 VSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999 999999998887643
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.62 E-value=5.3e-16 Score=153.87 Aligned_cols=103 Identities=16% Similarity=0.278 Sum_probs=87.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+.+||||||++.++..|...|... ++.|.. .++.+++..+... .||+||+|+.||++||++++++|++ ..+|
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~----~~~p 76 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLE----RGLP 76 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHH----TTCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHh----CCCC
Confidence 468999999999999999999764 777754 4555666655433 7999999999999999999999986 3589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRT 141 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~ 141 (558)
||++|+..+.+...+++++||+|||.||+..
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999999643
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.59 E-value=1.7e-15 Score=172.55 Aligned_cols=119 Identities=11% Similarity=0.172 Sum_probs=109.7
Q ss_pred EEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHHH
Q 008655 34 RILLCDNDS-NS-------SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPM----TKGLKMLKYIT 101 (558)
Q Consensus 34 rVLIVDDd~-~~-------r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~----mDGlElL~~Ir 101 (558)
+||||||+. .+ ++.|...|+..||+|..|.++++|+..+... ..+|+||+|+.||+ ++|+++|++|+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~iR 80 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHHH
Confidence 899999999 88 9999999999999999999999999999764 24999999999999 99999999999
Q ss_pred hhcCCCCceEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDE-VSVVVKCLRLGAADYLVKPLRTNE-LLNLWTHMWRRR 155 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d-~e~a~eAL~~GA~DYL~KP~~~ee-L~~~L~~llr~~ 155 (558)
+.. ..+||||+|+..+ .+....++..||+|||.||++..+ |..+|+.++++.
T Consensus 81 ~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 81 ERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 874 6799999999887 777888999999999999999999 889999998775
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.08 E-value=4.2e-09 Score=111.29 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=104.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...+||+|||+...+..+...|.. .+.+....++.+++. +... .||+|++|+.||+|+|+++++.|+.......+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 456899999999988888888754 467778888888863 3333 799999999999999999999999866567899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 157 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r~ 157 (558)
||++|+.........+++.|++||+.||+...++...+..+++..+.
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~ 273 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRY 273 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999998888877765543
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.02 E-value=2.3e-10 Score=108.76 Aligned_cols=92 Identities=17% Similarity=0.396 Sum_probs=76.0
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 57 YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 57 yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +..++++++.....+...++++.||++||.
T Consensus 6 ~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~ 81 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEe
Confidence 4455688999999999877 799999999999999999999999765 445566666666688899999999999999
Q ss_pred CC--CCHHHHHHHHHHHH
Q 008655 137 KP--LRTNELLNLWTHMW 152 (558)
Q Consensus 137 KP--~~~eeL~~~L~~ll 152 (558)
|| +...+|...+.+.+
T Consensus 82 kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 82 NTAAVENPSLITQIAQTF 99 (237)
T ss_dssp SHHHHHCTHHHHHHHHHH
T ss_pred CCcccChHHHHHHHHHHh
Confidence 99 66677777666554
No 111
>3sft_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; modified doubly-wound/fold, chemoreceptor; 2.15A {Thermotoga maritima}
Probab=98.32 E-value=1.8e-07 Score=90.33 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=39.3
Q ss_pred ccEEEEEccccchhhccccccccCCCCCC-ccccccCCCCCCCCc
Q 008655 217 VATATVVASTSGTAAVEPIDASECGPDVP-GISDRRTGQFSAGPK 260 (558)
Q Consensus 217 ~~iVaIGASTGGp~AL~~I~L~~lPaD~P-pil~~~~~~l~~~~~ 260 (558)
.++|+||||||||+||+.+ |..||+||| |+++.| ||+++++
T Consensus 7 ~~vV~IGaStGG~~AL~~~-l~~LP~~~~~~ivivQ--Hm~~~f~ 48 (193)
T 3sft_A 7 GKIVVIGSSTGGPRSLDMI-IPNLPKNFPAPIVVVQ--HMPPGFT 48 (193)
T ss_dssp SCEEEEEECTTHHHHHTTT-GGGSCTTCSSCEEEEE--CCCTTCH
T ss_pred CCEEEEEeCCCCHHHHHHH-HHhCCCCCCCeEEEEE--CCCCCcH
Confidence 4799999999999999999 999999999 999999 9999996
No 112
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl methylesteras; 1.75A {Salmonella typhimurium} SCOP: c.40.1.1
Probab=98.19 E-value=3e-07 Score=89.45 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=39.0
Q ss_pred ccEEEEEccccchhhccccccccCCCCCCccccccCCCCCCCCc
Q 008655 217 VATATVVASTSGTAAVEPIDASECGPDVPGISDRRTGQFSAGPK 260 (558)
Q Consensus 217 ~~iVaIGASTGGp~AL~~I~L~~lPaD~Ppil~~~~~~l~~~~~ 260 (558)
.++|+||||||||+||+.+ |..||+|+|+|++.| ||+++++
T Consensus 10 ~~vV~IGaStGG~~AL~~~-l~~LP~~~~~ivivQ--Hm~~~f~ 50 (203)
T 1chd_A 10 EKLIAIGASTGGTEAIRHV-LQPLPLSSPAVIITQ--HMPPGFT 50 (203)
T ss_dssp CCEEEEEECTTHHHHHHHH-HTTCCTTSCEEEEEE--CCCTTHH
T ss_pred CCEEEEEeCCCCHHHHHHH-HHhCCCCCCeEEEEE--CCCCchH
Confidence 4799999999999999999 999999999999999 9999996
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.03 E-value=0.00075 Score=76.68 Aligned_cols=104 Identities=9% Similarity=0.123 Sum_probs=79.4
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHH-
Q 008655 45 SDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV- 123 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a- 123 (558)
.+.|...|+..||+|+.+.+.++|+..++.. ...+.||+|++++ +.+++++|++.. ..+||++++.......+
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCcccccc
Confidence 3456688889999999999999999999875 4689999999986 789999999875 89999999987543222
Q ss_pred HHHHHcCCCEEEeCCCCH-HHHHHHHHHHHHHH
Q 008655 124 VKCLRLGAADYLVKPLRT-NELLNLWTHMWRRR 155 (558)
Q Consensus 124 ~eAL~~GA~DYL~KP~~~-eeL~~~L~~llr~~ 155 (558)
.+. -.++.+|+.+..+. +.+...|.+..++.
T Consensus 93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 93 LND-LRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GTT-SCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhh-hhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 222 35789999998754 44445555555443
No 114
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.97 E-value=0.0013 Score=64.31 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=69.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
....+||||||++..+..|..+|...|++|..+.+. . ...+|+||+|+.+|...+. .
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~--------~-~~~~~~ii~d~~~~~~~~~--------------~ 65 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ--------E-PTPEDVLITDEVVSKKWQG--------------R 65 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC--------C-CCTTCEEEEESSCSCCCCS--------------S
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC--------C-CCcCcEEEEcCCCcccccc--------------c
Confidence 456799999999999999999999999999877641 1 2368999999999875431 1
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
.+|.++...... ....+...++.||+...+|...+.++.
T Consensus 66 ~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 66 AVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp EEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred eEEEEecccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 356666532210 112355688999998887777665543
No 115
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.87 E-value=0.0029 Score=55.03 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=83.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+-.||+|..+-.+.-.+++++....|+++....-.+ ....|+|+|++.+-. +.|.+.......-
T Consensus 11 ~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLP-------e~ifS~k~~~~~d 75 (121)
T 3q7r_A 11 GPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLP-------REIRSPKSLEGSF 75 (121)
T ss_dssp CCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSC-------TTCCCCTTCCSCE
T ss_pred CCcEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecCh-------HHhcCCCCCCccc
Confidence 3567899999999999999999777899887653211 135799999985432 1233333345677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
+|++=..-+.+..++.+..||. ||..|++..-|.++|+..++.
T Consensus 76 liVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 76 VLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 8888888889999999999999 999999999999998888764
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.35 E-value=0.09 Score=48.64 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=86.0
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHH
Q 008655 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~---Asdg~EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir 101 (558)
+..+||+. |-+..=...+..+|+..||+|+. ....++.++.+.+. .||+|.+...+.. + .-.++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHH
Confidence 35688888 77777778888899999999983 34788889988876 8999999887764 2 2345666777
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 156 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~r 156 (558)
+.. ..+++|+ +.+..-.+....+.+.|++.++..-.+..+....++.++..++
T Consensus 95 ~~g-~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 95 ELG-ADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEKR 147 (161)
T ss_dssp HTT-CTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hcC-CCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHhh
Confidence 643 1356655 4554444444456789999867655566777777777776543
No 117
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.87 E-value=0.021 Score=53.49 Aligned_cols=81 Identities=15% Similarity=0.306 Sum_probs=61.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC-CCCCCCHH--HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE-----
Q 008655 64 SPRQVIDALNAEGSDIDLILAEV-DLPMTKGL--KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL----- 135 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi-~MP~mDGl--ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL----- 135 (558)
+..+.+..+...+ .++|+++++ .++.++|+ ++++++... ..+|||.+++....+...++++.||++++
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 4667767665542 467999997 66667775 456666543 68999999999999999999999999995
Q ss_pred -eCCCCHHHHHHHH
Q 008655 136 -VKPLRTNELLNLW 148 (558)
Q Consensus 136 -~KP~~~eeL~~~L 148 (558)
.+|++..++...+
T Consensus 207 ~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 207 HFREIDVRELKEYL 220 (237)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 6788888876643
No 118
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=94.46 E-value=1.1 Score=40.04 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=74.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-C-HHHHHHHHHhh
Q 008655 33 VRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-K-GLKMLKYITRD 103 (558)
Q Consensus 33 irVLIV----DDd~~~r~~L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP~m-D-GlElL~~Ir~~ 103 (558)
.+||+. |-+..=...+..+|+..||+|+ .....++.++.+.+. +||+|.+...+... . --++++.|++.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET--KADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH--TCSEEEEEECSSTHHHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEecCcCcHHHHHHHHHHHHhc
Confidence 455554 3344445567778889999987 456899999999877 89999999877542 1 23466777764
Q ss_pred cCCCCceEEEEecC-----CCHH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQ-----DEVS-VVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 104 ~~~~~iPVIVLSa~-----~d~e-~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
. ..+++|+ +.+. .+.. ....+.++|++.|+.---+..++...+..
T Consensus 82 g-~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 82 G-LEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp T-CTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred C-CCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 3 2356664 4443 2222 24457899998888766667766665544
No 119
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=93.92 E-value=0.81 Score=45.93 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=81.6
Q ss_pred CcEEEEEeCCH------HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHH
Q 008655 32 KVRILLCDNDS------NSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLK 98 (558)
Q Consensus 32 ~irVLIVDDd~------~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~ 98 (558)
.+++=|+-|+. .......+.|.+.||.|+ +..|...|..+... .+++| +.+..| +..-.++++
T Consensus 105 ~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~---G~~aV-mPlg~pIGsG~Gi~~~~lI~ 180 (265)
T 1wv2_A 105 LVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEI---GCIAV-MPLAGLIGSGLGICNPYNLR 180 (265)
T ss_dssp EEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHS---CCSEE-EECSSSTTCCCCCSCHHHHH
T ss_pred eEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh---CCCEE-EeCCccCCCCCCcCCHHHHH
Confidence 46666663322 222334556667899977 56677777776543 58877 665554 222378999
Q ss_pred HHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008655 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~~r~~ 158 (558)
.|++. ..+|||+=.+-...+.+.++|++||+.++. |--++..+...+...++..+..
T Consensus 181 ~I~e~---~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr~a 242 (265)
T 1wv2_A 181 IILEE---AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLA 242 (265)
T ss_dssp HHHHH---CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99874 679999877788899999999999999865 4445666666666666554443
No 120
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=91.70 E-value=0.089 Score=32.99 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhccC.....
Q 008655 472 VDRREAALIKFRQKRKERC..... 490 (558)
Q Consensus 472 ~~~r~~~~~r~~~k~~~r~..... 490 (558)
+..|.+.|.||-||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4579999999999999983
No 121
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.59 E-value=1.2 Score=43.38 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 42 SNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD------LPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 42 ~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~------MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
+.....+.+.+.+.|..+. .+.+.+++...... ..|+|.+.+. .+...+++++++|+.. .+|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~ 187 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAE 187 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEE
Confidence 3344445555666787765 77899999887654 5898864321 2234568899998752 7899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008655 115 SAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+-.+.+.+.+++++||+.++.
T Consensus 188 GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 188 GRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 9988999999999999999976
No 122
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=90.83 E-value=1.3 Score=42.06 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=69.5
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~-mD-GlElL~~Ir~ 102 (558)
..+||+. |-+..=...+..+|+..||+|.... ..++.++.+.+. +||+|.+-..++. +. -.++++.|++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY--QPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH--CCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 6667777888899999999988433 577888888776 8999999987764 33 3456777776
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
....+.+||++--...+.+.+ -+.||+.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 432234777665555554433 4579987754
No 123
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=90.79 E-value=2.8 Score=41.25 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHH
Q 008655 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVT---SVRSPRQVIDALNAEGSDIDLILAEVDLPM-TKG-LKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIV----DDd~~~r~~L~~lL~~~gyeV~---~Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDG-lElL~~Ir 101 (558)
...+||+. |-+..=...+..+|+..||+|+ .-...++.++.+.+. +||+|.+-..++. +.. -++++.|+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~--~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKE--KPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH--CCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 34678887 5666777788889999999986 334778888888777 8999999887764 443 45777887
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
+.. ..+||++--.....+. +-..||+.|..-. .+....+..++
T Consensus 200 ~~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 200 ENG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TTT--CCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHH
T ss_pred hcC--CCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHH
Confidence 654 4577666554444443 2378987665433 33344444443
No 124
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=90.23 E-value=3.6 Score=41.16 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=76.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC----C
Q 008655 32 KVRILLC----DNDSNSSDAVFSL--------LVKC-SYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPM----T 91 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~l--------L~~~-gyeV~~---Asdg~EALe~L~~~~~~PDLIILDi~MP~----m 91 (558)
+.+|++. |-+..=...+..+ |+.. ||+|+. .-..++.++.+.+. ++|+|.+...|.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~--~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL--EADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeecCCccchH
Confidence 4577665 5555555566667 8899 999874 33788888888876 8999999998875 2
Q ss_pred CHH-HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 92 KGL-KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 92 DGl-ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
..+ ++++.|++......++|++=-...+.+ .+.+.||+.|..--....++...+...+.
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 322 456667664311235654433333333 36688999888766777776666554443
No 125
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.19 E-value=2 Score=41.80 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 42 SNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD------LPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 42 ~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~------MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
+.....+.+.+.+.|..+. .+.+.+++...... ..|+|.+.+. .+...+++++++|+.. .+|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 3344445555666787765 77889998877654 5898864321 1233468899999862 7899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008655 115 SAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+-.+.+.+.+++++||+.++.
T Consensus 188 GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 9988999999999999999976
No 126
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=89.99 E-value=1.6 Score=43.98 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=71.3
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHHHHHHhhcCCCC-ceEEEEecCCCH
Q 008655 49 FSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-----LKMLKYITRDKELQR-IPVIMMSAQDEV 120 (558)
Q Consensus 49 ~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG-----lElL~~Ir~~~~~~~-iPVIVLSa~~d~ 120 (558)
.+.|.+.||.|+ +..|...|..+.. . .+++| +.+.-|-..| .++++.|.+.. .. +|||+=.+-...
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~-~--G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAA-L--GTATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHH-H--TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHh-c--CCCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCH
Confidence 445567799977 4467765555544 3 57877 6665542222 56688888722 56 899987778889
Q ss_pred HHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHHHHh
Q 008655 121 SVVVKCLRLGAADYLV-----KPLRTNELLNLWTHMWRRRRML 158 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~llr~~r~~ 158 (558)
+.+..+|++||+..+. |.-++..+...+...+..-+..
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~agr~a 233 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKA 233 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 4445666666666666655443
No 127
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=87.73 E-value=3 Score=46.85 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCcEEEEE----eCCHHHHHHH----HHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHH-
Q 008655 31 SKVRILLC----DNDSNSSDAV----FSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM----TKGL- 94 (558)
Q Consensus 31 ~~irVLIV----DDd~~~r~~L----~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~----mDGl- 94 (558)
++.+|||. |-+..=...+ ..+|+..||+|+.. ...++.++.+.+. .+|+|.+...|.. +..+
T Consensus 601 ~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Ee--dADVVGLSsLLTt~dihL~~Mk 678 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIEL--KADAILASTIISHDDIHYKNMK 678 (763)
T ss_dssp SCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCGGGHHHHHHH
T ss_pred cCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCchhhHHHHH
Confidence 36788887 3333333222 46788889999733 4789999999887 8999999988876 3443
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
++++.|++......++||+=-..-+.+. +-+.||+.|..-.....++...|...+..
T Consensus 679 evIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 679 RIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 4667777654222355554333344443 45899999988777777766665554443
No 128
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=87.68 E-value=2.4 Score=40.77 Aligned_cols=100 Identities=10% Similarity=0.068 Sum_probs=69.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEE--eCCCCC-CC-HHHHHHHH
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILA--EVDLPM-TK-GLKMLKYI 100 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIIL--Di~MP~-mD-GlElL~~I 100 (558)
..+||+. |-+..=...+..+|+..||+|+.. -..++.++.+.+. +||+|.+ ...|.. +. --++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~--~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKH--KGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT--TTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc--CCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4578777 666666778888999999998743 3678888888877 8999999 876653 33 34567778
Q ss_pred HhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++......+||++=-..-+.+. +-+.||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 7753212577765554455443 34569988854
No 129
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=87.13 E-value=0.17 Score=32.13 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 008655 475 REAALIKFRQKRKERCFDK 493 (558)
Q Consensus 475 r~~~~~r~~~k~~~r~~~k 493 (558)
|.+.|.||-||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987654
No 130
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=86.75 E-value=6.7 Score=44.61 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=78.7
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHH
Q 008655 31 SKVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir 101 (558)
++.+|||. |-+..=...+..+|+..||+|+.- .+.++.++.+.+. .+|+|.+...|.. + ...++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHhHHHHHHHHHHHHH
Confidence 35678776 334444456666888889999843 3678999998876 8999999887754 2 2456777887
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+.. ..+++ ||+-+..-......+.+.|++.|+.--.+..++...+...+.
T Consensus 673 ~~G-~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 673 KLG-RPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp HTT-CTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hcC-CCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 754 22443 445542222233456899999999866677777666655543
No 131
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=86.17 E-value=8.8 Score=38.31 Aligned_cols=87 Identities=14% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV---DLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi---~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
...+.......|..++ .+.+.+++...+.. .+|+|-+.- .... -+++.+.+|...- ...+|||..++-.+.
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v-~~~~pvVaegGI~t~ 225 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGL-PSSVIRIAESGVRGT 225 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGS-CTTSEEEEESCCCSH
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhC-cccCEEEEECCCCCH
Confidence 4445555667788765 78899887776654 478887752 1112 2356677776532 126899999998889
Q ss_pred HHHHHHHHcCCCEEEe
Q 008655 121 SVVVKCLRLGAADYLV 136 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~ 136 (558)
+.+.+++++||+.++.
T Consensus 226 edv~~l~~~GadgvlV 241 (272)
T 3qja_A 226 ADLLAYAGAGADAVLV 241 (272)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999986
No 132
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=85.03 E-value=9.3 Score=37.49 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=54.3
Q ss_pred CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH
Q 008655 57 YQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (558)
Q Consensus 57 yeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~ 128 (558)
..+. ++.+.+|+.+.... .+|.|.+.--.|. .-|++.+++|.... ...+|||.+.+- +.+.+.++++
T Consensus 136 ~~iG~S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~ 210 (243)
T 3o63_A 136 TLIGRSTHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLD 210 (243)
T ss_dssp CEEEEEECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHH
T ss_pred CEEEEeCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHH
Confidence 3444 78899998877653 5899998654443 23688888887531 137899999886 5667888999
Q ss_pred cCCCEEEe
Q 008655 129 LGAADYLV 136 (558)
Q Consensus 129 ~GA~DYL~ 136 (558)
.||+.+..
T Consensus 211 aGa~gvav 218 (243)
T 3o63_A 211 AGARRIVV 218 (243)
T ss_dssp TTCCCEEE
T ss_pred cCCCEEEE
Confidence 99999865
No 133
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=84.05 E-value=2.3 Score=43.82 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=75.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC---SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~---gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.++++.|+|.|....+.|.+.|... .|+|..+++.+.+.+.+++. ++||+++|-.+..-. ..+. .
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~--~~dilli~e~~~~~~-----~~~~-----~ 87 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEY--RIDVLIAEEDFNIDK-----SEFK-----R 87 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHH--TCSEEEEETTCCCCG-----GGGC-----S
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcC--CCCEEEEcchhhhhh-----hhhc-----c
Confidence 6899999999999999999999643 58999999999999999877 899999998775521 1111 3
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
...+++++.....+ ...-...+.|--..+++...+..+.
T Consensus 88 ~~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 88 NCGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp SCEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 45677776543221 0112246788888888876665544
No 134
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=83.98 E-value=12 Score=39.42 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=68.0
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCC-----------CCCCCHHH
Q 008655 33 VRILLCDN----DSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD-----------LPMTKGLK 95 (558)
Q Consensus 33 irVLIVDD----d~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~-----------MP~mDGlE 95 (558)
+.++++|- +..+.+.+..+-...+..|+ .+.+.++|..+++. ..|.|++... -.+...++
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~~ 233 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQIT 233 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHHH
Confidence 56777752 33344555554444466655 68899999888765 4899988421 01234567
Q ss_pred HHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++..+........+|||.-.+-.+...+.+++.+||+....
T Consensus 234 al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 234 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 77777653222578999888888899999999999998854
No 135
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=83.55 E-value=7.1 Score=44.60 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=81.0
Q ss_pred CCcEEEEEe----CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHH
Q 008655 31 SKVRILLCD----NDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIVD----Dd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir 101 (558)
++.+|||.- .+..=...+..+|+..||+|+.- .+.++.++.+.+. .+|+|.+...|.. + ...++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA--DVHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHHHHHHHHHHHHHHH
Confidence 356777763 33333456667888889999843 3678999988876 7999999887754 2 2456777787
Q ss_pred hhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 155 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~~ 155 (558)
+.. ..+++ |++-+..-......+.+.|++.|+..-.+..+....+..++..+
T Consensus 681 ~~G-~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLG-RPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTT-CTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcC-CCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 754 22443 44454222223345688999999987678888877777776544
No 136
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=82.32 E-value=13 Score=35.05 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=54.0
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHH
Q 008655 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127 (558)
Q Consensus 56 gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL 127 (558)
+..+. .+.+.+++.+.... ..|.|+++-..+. .-|++.++++++. ..+||++..+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHH
Confidence 55544 67788888776653 5899999764332 2367888888764 37899888877 778888999
Q ss_pred HcCCCEEEe
Q 008655 128 RLGAADYLV 136 (558)
Q Consensus 128 ~~GA~DYL~ 136 (558)
+.||+.+..
T Consensus 183 ~~Ga~gv~v 191 (221)
T 1yad_A 183 QAGADGIAV 191 (221)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998854
No 137
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=81.02 E-value=18 Score=33.47 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=59.1
Q ss_pred EEEEeCCH--HHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHHhhc
Q 008655 35 ILLCDNDS--NSSDAVFSLLVKCSYQVTSV----RSPRQVIDALNAEGSDIDLILAEVDLP----MTKGLKMLKYITRDK 104 (558)
Q Consensus 35 VLIVDDd~--~~r~~L~~lL~~~gyeV~~A----sdg~EALe~L~~~~~~PDLIILDi~MP----~mDGlElL~~Ir~~~ 104 (558)
.+++-+.+ .....+.+.+++.|..+... .+..+.++.+... ..|.|.++.... ...+++.+++|++..
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHHHHC
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHHHHc
Confidence 34444443 33345556666668776532 3444444444444 478887763211 013578888888752
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.+||++-.+-. .+.+.+++++||+.++.
T Consensus 158 --~~~~i~~~gGI~-~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 158 --RKARIAVAGGIS-SQTVKDYALLGPDVVIV 186 (211)
T ss_dssp --SSCEEEEESSCC-TTTHHHHHTTCCSEEEE
T ss_pred --CCCcEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 468888766654 67788899999999865
No 138
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=79.71 E-value=20 Score=33.11 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=52.7
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHH
Q 008655 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-------TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL 127 (558)
Q Consensus 56 gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-------mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL 127 (558)
+..+. .+.+..++..... . .+|.|+++--.|. ..+++.++++++. ..+||++..+-. .+.+.+++
T Consensus 108 ~~~~~v~~~t~~e~~~~~~-~--g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~pvia~GGI~-~~nv~~~~ 180 (215)
T 1xi3_A 108 NLIIGASVYSLEEALEAEK-K--GADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---VKIPVVAIGGIN-KDNAREVL 180 (215)
T ss_dssp TSEEEEEESSHHHHHHHHH-H--TCSEEEEECSSCC----CCCCCHHHHHHHHHHH---CSSCEEEESSCC-TTTHHHHH
T ss_pred CCEEEEecCCHHHHHHHHh-c--CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh---CCCCEEEECCcC-HHHHHHHH
Confidence 44443 5678888776544 3 5899998754443 3578899998864 378988877665 66777888
Q ss_pred HcCCCEEEe
Q 008655 128 RLGAADYLV 136 (558)
Q Consensus 128 ~~GA~DYL~ 136 (558)
+.||+.+..
T Consensus 181 ~~Ga~gv~v 189 (215)
T 1xi3_A 181 KTGVDGIAV 189 (215)
T ss_dssp TTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999999854
No 139
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=79.60 E-value=26 Score=36.39 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=68.0
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----------CCCCHH
Q 008655 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKGL 94 (558)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M-----------P~mDGl 94 (558)
..+++|| +.......++.+-+.. +..|+ .+.+.++|..+... ..|.|.+.+.- .+...+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~gpGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecCCCCCCCcccccCcccchH
Confidence 5677776 3444555555555554 55554 58899999988765 48999884321 112456
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+++..+.+......+|||.--+-.+...+.+++.+||+....
T Consensus 198 ~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 198 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 666666642222478999888888888999999999988854
No 140
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=78.27 E-value=7.6 Score=38.31 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-C---CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc
Q 008655 56 SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-P---MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL 129 (558)
Q Consensus 56 gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M-P---~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~ 129 (558)
|+.+. ++.+.+++...... ..|.|+.=-.. . +..+.+++++|++. ..+|||+..+-.+.+.+.+++++
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 76655 55677766655443 46766330000 1 23357889999874 57999999998889999999999
Q ss_pred CCCEEEeC
Q 008655 130 GAADYLVK 137 (558)
Q Consensus 130 GA~DYL~K 137 (558)
||+.++.=
T Consensus 200 GAdgViVG 207 (264)
T 1xm3_A 200 GADGVLLN 207 (264)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99999754
No 141
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=77.65 E-value=19 Score=36.27 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=59.3
Q ss_pred HHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC----C---CCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 49 FSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP----M---TKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 49 ~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP----~---mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
.+.++..|..|+ .+.+.+++...... ..|.|+++-.-+ + ...++++.++++. ..+|||+-.+-.+.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~ 184 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADG 184 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSH
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCH
Confidence 344555576655 57788888876654 489888853211 1 2567888888864 47899988888888
Q ss_pred HHHHHHHHcCCCEEEe
Q 008655 121 SVVVKCLRLGAADYLV 136 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~ 136 (558)
+.+.+++.+||+.+..
T Consensus 185 ~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 185 RGLVAALALGADAINM 200 (328)
T ss_dssp HHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8899999999998864
No 142
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=75.90 E-value=36 Score=30.17 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=71.9
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVTS-V--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~-~~r~~L~~lL~~~gyeV~~-A--sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.++++|+.+.+ .....+..++...+ .|.. . -+..+..+++. ..|++++-... ..-|+.+++.+. .
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a-----~ 138 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC-----L 138 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH-----T
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH-----C
Confidence 57888887654 24566777777766 4444 2 35567777664 46888875433 334677777775 5
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
.+|||+. .. ....+.+ .|-..++..|.+.++|...|..++.
T Consensus 139 G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 6787754 22 2344555 7888999999999999999998886
No 143
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=75.88 E-value=36 Score=36.78 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=67.3
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CCH
Q 008655 32 KVRILLCD----NDSNSSDAVFSLLVKCS-YQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM-----------TKG 93 (558)
Q Consensus 32 ~irVLIVD----Dd~~~r~~L~~lL~~~g-yeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~-----------mDG 93 (558)
.+.+++|| +...+...+.++-+..+ ..|+ .+.+.+.|..++.. ..|.|++.+.--. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 36678887 33444455555555543 4443 67788888888765 4898887442211 234
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++++..+.+......+|||.-.+-.+...+.+|+.+||+..+.
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 5565555432222468999888888999999999999999865
No 144
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=75.39 E-value=36 Score=34.29 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=61.5
Q ss_pred CcCCCCCcEEEEEeCCHHHHH-HHHHHHHhCCCEEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 26 GFIDRSKVRILLCDNDSNSSD-AVFSLLVKCSYQVT-SV-RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 26 ~~m~m~~irVLIVDDd~~~r~-~L~~lL~~~gyeV~-~A-sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
..+.|+++||.||.--..-+. .+..+....+++|+ .+ .+.+.+.+..... ..... .|+ +.+..
T Consensus 21 ~~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~~~-~~~-----------~~ll~ 86 (350)
T 3rc1_A 21 NPANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF--GGEPV-EGY-----------PALLE 86 (350)
T ss_dssp -----CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH--CSEEE-ESH-----------HHHHT
T ss_pred CCCCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc--CCCCc-CCH-----------HHHhc
Confidence 345677899999998776653 44444444478765 33 4555555554443 22222 332 22322
Q ss_pred hcCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
. ..+-+|+++... -.+.+..|+++|..=|+-||+. .++..+.++
T Consensus 87 ~---~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~ 134 (350)
T 3rc1_A 87 R---DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFA 134 (350)
T ss_dssp C---TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred C---CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 2 345566665433 3678889999999999999975 455544443
No 145
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=75.36 E-value=21 Score=35.93 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
....+.|-+.-.++.+...+..+|...-|.+..+.+..+.++.++.+...+|.+|+... +..-..+...|.+.. .-
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g--~l 81 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEG--VV 81 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTT--CC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcC--cc
Confidence 34567888899999999999999988889999999999999999887678999998761 234677888888765 56
Q ss_pred ceEEEEecC
Q 008655 109 IPVIMMSAQ 117 (558)
Q Consensus 109 iPVIVLSa~ 117 (558)
+|+|++...
T Consensus 82 LP~vil~~~ 90 (289)
T 1r8j_A 82 VPAIVVGDR 90 (289)
T ss_dssp CCEEEESCC
T ss_pred ccEEEeccC
Confidence 799988654
No 146
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=74.92 E-value=21 Score=35.22 Aligned_cols=100 Identities=10% Similarity=0.085 Sum_probs=63.2
Q ss_pred HHHHHHhCCCEE--EEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 48 VFSLLVKCSYQV--TSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 48 L~~lL~~~gyeV--~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
|++.|......+ +... +-.+.++++... .+|.||+|++-...+.-++...|+... ...++++|=....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~-~~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAK-NAGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHH-HHTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHH
Confidence 455555433332 3333 445666666555 699999999988887777766666532 1244555555555667888
Q ss_pred HHHHcCCCEEE-eCCCCHHHHHHHHHH
Q 008655 125 KCLRLGAADYL-VKPLRTNELLNLWTH 150 (558)
Q Consensus 125 eAL~~GA~DYL-~KP~~~eeL~~~L~~ 150 (558)
.++..|++..+ +|=-+.+++...+..
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHH
Confidence 99999998874 444466776655443
No 147
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=74.16 E-value=44 Score=32.85 Aligned_cols=98 Identities=8% Similarity=0.032 Sum_probs=61.7
Q ss_pred HHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 48 VFSLLVKCSY---QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 48 L~~lL~~~gy---eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
|++.|.. |. .++..-...+.++++... .+|.|++|++-...+--++...++... ....+++|=+...+...+.
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~-~~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVA-PYASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHT-TSSSEEEEECSSCCHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHH
Confidence 4555543 42 333333444555666554 699999999776666666666665532 2456777777667778888
Q ss_pred HHHHcCCCEEE-eCCCCHHHHHHHHH
Q 008655 125 KCLRLGAADYL-VKPLRTNELLNLWT 149 (558)
Q Consensus 125 eAL~~GA~DYL-~KP~~~eeL~~~L~ 149 (558)
.+++.|++..+ +|=-+.+++...+.
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~ 110 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHH
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHH
Confidence 99999998763 33345677554433
No 148
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=73.91 E-value=41 Score=33.63 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=62.2
Q ss_pred HHHHHHhCCC-EEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 48 VFSLLVKCSY-QVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 48 L~~lL~~~gy-eV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
|++.|.. |. .+. .-.+..+.++++... .+|.|++|++-...+--++...++... ....+++|=+...+...+.
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~-~~~~~~~VRv~~~d~~di~ 105 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIA-PYPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHT-TSSSEEEEECSSSCHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHH
Confidence 4555543 43 333 223445555666554 699999999776666556666565432 2466777777777777889
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHH
Q 008655 125 KCLRLGAADYLV-KPLRTNELLNLWT 149 (558)
Q Consensus 125 eAL~~GA~DYL~-KP~~~eeL~~~L~ 149 (558)
.+++.|++..+. |=-+.+++...+.
T Consensus 106 ~~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 999999987643 3345677554433
No 149
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=73.87 E-value=29 Score=34.67 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=65.1
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 27 FIDRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 27 ~m~m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
...++++||-||.--..-+..+...|... +++|+ .+. +.+.|-+..+.. ...-++.|+ +.+-..
T Consensus 18 ~~~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~y~d~-----------~ell~~ 84 (350)
T 4had_A 18 LYFQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF--SVPHAFGSY-----------EEMLAS 84 (350)
T ss_dssp ----CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH--TCSEEESSH-----------HHHHHC
T ss_pred ccccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCeeeCCH-----------HHHhcC
Confidence 44456899999998776666555666554 67776 444 555555555443 222233332 233332
Q ss_pred cCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+.+-+|+++.... .+.+.+|+++|-.=|+-||+. .++..+.++
T Consensus 85 ---~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 131 (350)
T 4had_A 85 ---DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIA 131 (350)
T ss_dssp ---SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHH
T ss_pred ---CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHH
Confidence 4566676665444 678999999999999999975 444444433
No 150
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=73.40 E-value=23 Score=35.98 Aligned_cols=106 Identities=12% Similarity=0.188 Sum_probs=60.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
|.|++++|.||.--..-+..+..+....++++. .+..-.+..+.+.. +.+ +..+.+ +.+...
T Consensus 1 M~m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~----~g~-------~~~~~~---~~ll~~--- 63 (359)
T 3e18_A 1 MSLKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ----KGL-------KIYESY---EAVLAD--- 63 (359)
T ss_dssp --CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHT----TTC-------CBCSCH---HHHHHC---
T ss_pred CCCCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHh----cCC-------ceeCCH---HHHhcC---
Confidence 557789999999876666555443333478876 44433333344332 222 111212 222222
Q ss_pred CCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 107 QRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 107 ~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
+.+-+|+++... -.+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (359)
T 3e18_A 64 EKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDV 111 (359)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHH
Confidence 345566665433 3678899999999999999975 4555444433
No 151
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=73.34 E-value=25 Score=35.59 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=59.5
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCCC----CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHH
Q 008655 50 SLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLPM----TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 50 ~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP~----mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a 123 (558)
+.+...+..|+ .+.+.++|...... .+|.|+++- ...+ ...++++.++++. ..+|||+-.+-.+.+.+
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~dv 191 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRGM 191 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence 44455576665 56888888776653 488888853 2222 3568889888864 47899988888889999
Q ss_pred HHHHHcCCCEEEe
Q 008655 124 VKCLRLGAADYLV 136 (558)
Q Consensus 124 ~eAL~~GA~DYL~ 136 (558)
.+++.+||+.+..
T Consensus 192 ~~al~~GA~gV~v 204 (326)
T 3bo9_A 192 AAAFALGAEAVQM 204 (326)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHhCCCEEEe
Confidence 9999999998864
No 152
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=73.21 E-value=25 Score=34.72 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=66.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++|+.+.+. ..+..++....-.|. -.-+..+..+++.. .|++|+--.-.+.-|+.+++.+. ..+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a-----~G~ 308 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA-----AGT 308 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH-----HTC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH-----cCC
Confidence 456666666554 445554443211122 22244555666653 47777653212334667777775 456
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||+... ....+.+..|-..++..|.+.++|...|..++..
T Consensus 309 PvI~~~~----~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 309 AVVASDL----DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EEEECCC----HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred CEEEecC----CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 8775322 3455777888899999999999999999988764
No 153
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=72.61 E-value=24 Score=36.49 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=64.5
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----------CCCCHHH
Q 008655 33 VRILLCD----NDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKGLK 95 (558)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M-----------P~mDGlE 95 (558)
..++++| +...+...+..+-+..+..|+ .+.+.++|..++.. ..|.|.+-+.- .+...++
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~ 194 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQIT 194 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcHH
Confidence 4455654 333444555555454466554 67888888887764 48988873210 0123456
Q ss_pred HHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++.++.+......+|||.--+-.+...+.+++.+||+....
T Consensus 195 ~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 195 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 66666432111368999888888889999999999998854
No 154
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=72.57 E-value=5.9 Score=41.71 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=57.7
Q ss_pred CCCcCCCCCcEEEEEeC----CHHHHHHHHHHHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHH
Q 008655 24 GDGFIDRSKVRILLCDN----DSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDID-LILAEVDLPMTKGLK 95 (558)
Q Consensus 24 ~~~~m~m~~irVLIVDD----d~~~r~~L~~lL~~-~gyeV~-~As-dg~EALe~L~~~~~~PD-LIILDi~MP~mDGlE 95 (558)
....|.|+++||.||.- -..-...+..+... .+++++ .+. +.+.+.+.....+ -++ .+..|
T Consensus 12 ~~~~m~m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g-~~~~~~~~~---------- 80 (438)
T 3btv_A 12 VSTVPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLK-LSNATAFPT---------- 80 (438)
T ss_dssp -------CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT-CTTCEEESS----------
T ss_pred cccccccCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC----------
Confidence 34446667899999997 32223334444444 468765 555 3443433333321 112 12222
Q ss_pred HHHHHHhhcCCCCceEEEEecCCC--HHHHHHHHHcC------CCEEEeCCCC--HHHHHHHHH
Q 008655 96 MLKYITRDKELQRIPVIMMSAQDE--VSVVVKCLRLG------AADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~~d--~e~a~eAL~~G------A~DYL~KP~~--~eeL~~~L~ 149 (558)
++.+... +.+-+|+++.... .+.+..|+++| -.=|+-||+. .++..+.++
T Consensus 81 -~~~ll~~---~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~ 140 (438)
T 3btv_A 81 -LESFASS---STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYK 140 (438)
T ss_dssp -HHHHHHC---SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHH
T ss_pred -HHHHhcC---CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHH
Confidence 2233332 3556676665433 66788999999 8889999975 455444333
No 155
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=72.36 E-value=49 Score=34.00 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=66.1
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CCH
Q 008655 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM------------TKG 93 (558)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~------------mDG 93 (558)
..++.++ +.....+.+..+-+.. +..|+ .+.+.++|..++.. ..|.|++... ++ ..-
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCCH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCccH
Confidence 4566665 3344455555554444 55443 67889999888765 4898877532 21 223
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~ 139 (558)
+.++..+.+......+|||.-.+-.+...+.+||.+||+.. +-++|
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 44555554321113689998888899999999999999987 55665
No 156
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=72.29 E-value=36 Score=34.86 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=57.4
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCC---------C-----C--CCHHHHHHHHHhhcCCCCceEEEE
Q 008655 52 LVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDL---------P-----M--TKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 52 L~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~M---------P-----~--mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
+...|..|. .+.+.+++...... .+|.|+++-.- + . ...++++++++.. ..+|||+.
T Consensus 141 ~~~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaa 214 (369)
T 3bw2_A 141 LRRAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAA 214 (369)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEE
Confidence 334566655 67888888766543 58999985311 1 0 2348899999864 47899988
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008655 115 SAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+-.+.+.+.+++.+||+.+..
T Consensus 215 GGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 215 GGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8888899999999999988754
No 157
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=72.21 E-value=42 Score=31.48 Aligned_cols=117 Identities=12% Similarity=0.209 Sum_probs=69.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEe----------CCCC----CCCHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAE----------VDLP----MTKGLKM 96 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILD----------i~MP----~mDGlEl 96 (558)
..+|+++-..+.++..+..++.+.+.++. ...+.+++++..+.....+||||.- +..| ..+|+++
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Di 83 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDT 83 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHH
Confidence 35899999999999988888887666654 5567888888876522368988842 2233 3567777
Q ss_pred HHHHHhhcCCCCceEEEEecC---CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008655 97 LKYITRDKELQRIPVIMMSAQ---DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 151 (558)
Q Consensus 97 L~~Ir~~~~~~~iPVIVLSa~---~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~l 151 (558)
++.|...... .-.|-+++-. .......+.+.....-|.. .+.+++...++.+
T Consensus 84 l~al~~a~~~-~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~--~~~~e~~~~i~~l 138 (196)
T 2q5c_A 84 MRAVYNAKRF-GNELALIAYKHSIVDKHEIEAMLGVKIKEFLF--SSEDEITTLISKV 138 (196)
T ss_dssp HHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHHTCEEEEEEE--CSGGGHHHHHHHH
T ss_pred HHHHHHHHhh-CCcEEEEeCcchhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHH
Confidence 7666654322 2244444422 2344454555443333322 2345555555444
No 158
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=72.06 E-value=32 Score=34.37 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCC--CCCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLP--MTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP--~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
...|.......|..+. .+++.+|+...+.. .+|+|=+.- .+- ..| ++.+.+|...- ...+|||.-++-.+.
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~i-p~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMA-PSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHS-CTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhC-CCCCcEEEECCCCCH
Confidence 3445555566798865 88899998776643 588887652 221 122 45555555432 136899999999999
Q ss_pred HHHHHHHHcCCCEEEe
Q 008655 121 SVVVKCLRLGAADYLV 136 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~ 136 (558)
+.+.+++++||+.+|.
T Consensus 233 edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999976
No 159
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=70.60 E-value=17 Score=40.16 Aligned_cols=101 Identities=14% Similarity=0.231 Sum_probs=68.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 008655 32 KVRILLC----DNDSNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~-mD-GlElL~~Ir~ 102 (558)
..+|||. |-+..=..++..+|+..||+|+.. ...++.++.+.+. .||+|.+-..|.. ++ --++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~--~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV--NADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH--TCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578887 556666677888889999999744 3688888888877 8999999987753 22 2346677776
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHc-----CCCEEEeCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRL-----GAADYLVKP 138 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~-----GA~DYL~KP 138 (558)
.. ..+||++--.....+.+. -+. ||+.|..-.
T Consensus 176 ~g--~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QG--FTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TT--CCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECCSH
T ss_pred cC--CCCeEEEEccccchhhhh--hhhhhcccCCeEEECCH
Confidence 54 578876655545544432 233 888776533
No 160
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=70.39 E-value=23 Score=33.07 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=53.5
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC-----CC----CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHH
Q 008655 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-----LP----MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (558)
Q Consensus 56 gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~-----MP----~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~e 125 (558)
+..+. .+.+..++...... ..|+|.+... .. ...++++++++++. ..+|||...+-.+.+.+.+
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia~GGI~~~~~~~~ 192 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIAEGNVITPDMYKR 192 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEEESSCCSHHHHHH
T ss_pred CceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEEecCCCCHHHHHH
Confidence 55554 66788888776543 4788765321 01 12346788888864 4689999888888999999
Q ss_pred HHHcCCCEEEe
Q 008655 126 CLRLGAADYLV 136 (558)
Q Consensus 126 AL~~GA~DYL~ 136 (558)
++++||+.++.
T Consensus 193 ~~~~Gad~v~v 203 (223)
T 1y0e_A 193 VMDLGVHCSVV 203 (223)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHcCCCEEEE
Confidence 99999999876
No 161
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=70.21 E-value=45 Score=32.46 Aligned_cols=97 Identities=9% Similarity=0.022 Sum_probs=60.9
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHH
Q 008655 48 VFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (558)
Q Consensus 48 L~~lL~~~g--yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~e 125 (558)
|++.|..-. +.++..-+..+.++++... .+|.|++|++-...+--++...++.. .....+++|=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~-~~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMAL-KGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHT-TTCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHH-HhCCCcEEEECCCCCHHHHHH
Confidence 455554422 3333333445555666544 69999999977644544555555543 235577777777777888899
Q ss_pred HHHcCCCEE-EeCCCCHHHHHHH
Q 008655 126 CLRLGAADY-LVKPLRTNELLNL 147 (558)
Q Consensus 126 AL~~GA~DY-L~KP~~~eeL~~~ 147 (558)
+++.|++.+ |+|=-+.+++...
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~ 109 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELA 109 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHH
T ss_pred HHhcCCceeeecCcCCHHHHHHH
Confidence 999999876 4444467777444
No 162
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=68.49 E-value=36 Score=34.05 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHH------HHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFS------LLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~------lL~~-~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~ 98 (558)
.+|+++||-||.-=..-+..+.. ++.. .+.+|+ .+. +.+.+-+..++. ...-+..|+ +
T Consensus 21 ~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~y~d~-----------~ 87 (393)
T 4fb5_A 21 QSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF--GFEKATADW-----------R 87 (393)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH--TCSEEESCH-----------H
T ss_pred cCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh--CCCeecCCH-----------H
Confidence 36788999999976544433322 2222 256766 444 333333333333 222344332 2
Q ss_pred HHHhhcCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 99 YITRDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
.+.+. +.+-+|+++.... .+.+..|+++|-.=|+-||+. .++....++
T Consensus 88 ell~~---~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~ 139 (393)
T 4fb5_A 88 ALIAD---PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLA 139 (393)
T ss_dssp HHHHC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred HHhcC---CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhh
Confidence 33332 4556666665433 778999999999999999975 455444443
No 163
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=68.45 E-value=31 Score=34.98 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|.|+++||.||.--..-...+...|.. .++++. .+..-.+..+.+.+. -+.+-+. .|--+++ ..
T Consensus 1 M~M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~~~~~~~------~~~~~ll----~~-- 66 (359)
T 3m2t_A 1 MSLSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF--ISDIPVL------DNVPAML----NQ-- 66 (359)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT--SCSCCEE------SSHHHHH----HH--
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh--cCCCccc------CCHHHHh----cC--
Confidence 557789999999887666534444544 467876 544333333333322 1111111 1222232 22
Q ss_pred CCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 106 ~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
+.+-+|++.... -.+.+.+|+++|..=|+-||+. .++..+.++.
T Consensus 67 -~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~ 114 (359)
T 3m2t_A 67 -VPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDA 114 (359)
T ss_dssp -SCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHH
Confidence 345566665433 3667889999999999999974 4555544433
No 164
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=67.99 E-value=37 Score=34.23 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=57.4
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHH
Q 008655 51 LLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVV 124 (558)
Q Consensus 51 lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~ 124 (558)
.++..++.|+ .+.+.+++..+... .+|.|+++-.-. ....++++++|++. ..+|||+..+-.+.+.+.
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~~ 178 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGAA 178 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHHH
Confidence 3444566655 56778777665543 489888853211 13568889999875 478999888888899999
Q ss_pred HHHHcCCCEEEe
Q 008655 125 KCLRLGAADYLV 136 (558)
Q Consensus 125 eAL~~GA~DYL~ 136 (558)
+++.+||+.+..
T Consensus 179 ~al~~GAdgV~v 190 (332)
T 2z6i_A 179 AGFMLGAEAVQV 190 (332)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEe
Confidence 999999988753
No 165
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=67.92 E-value=22 Score=34.91 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=46.7
Q ss_pred CceEEEEeCCCCC--CC--------------------HHHHHHHHHhhcCCCCceEEEEecCC------CHHHHHHHHHc
Q 008655 78 DIDLILAEVDLPM--TK--------------------GLKMLKYITRDKELQRIPVIMMSAQD------EVSVVVKCLRL 129 (558)
Q Consensus 78 ~PDLIILDi~MP~--mD--------------------GlElL~~Ir~~~~~~~iPVIVLSa~~------d~e~a~eAL~~ 129 (558)
..|+|-+++-..+ .| .++++++|++. .+.+||++++-.. -...+..+.++
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~a 121 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSREK 121 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHHc
Confidence 5898888774422 22 45668888864 2378999985432 14566778899
Q ss_pred CCCEEEeCCCCHHHHHHHH
Q 008655 130 GAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 130 GA~DYL~KP~~~eeL~~~L 148 (558)
|++.++.-.+..+++...+
T Consensus 122 G~dgvii~dl~~ee~~~~~ 140 (262)
T 2ekc_A 122 GIDGFIVPDLPPEEAEELK 140 (262)
T ss_dssp TCCEEECTTCCHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHH
Confidence 9999999777776654443
No 166
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=67.71 E-value=77 Score=33.97 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=68.1
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----------CCCCHH
Q 008655 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL-----------PMTKGL 94 (558)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M-----------P~mDGl 94 (558)
..++++| ....+...+..+-... +..|+ .+.+.++|..++.. ..|.|.+-+.- .+...+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g~Gs~~~t~~~~g~g~p~~ 318 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIGPGSICTTRIVAGVGVPQI 318 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHTCBCCCHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCCCCcCCCccccCCCCccHH
Confidence 5677776 4445556666665554 44444 47889888887765 48999873210 012356
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+++..+.+......+|||.-.+-.+...+.+|+.+||+....
T Consensus 319 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 319 SAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 666766653222479999888888999999999999988854
No 167
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=66.86 E-value=31 Score=35.01 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|+++||.||.--..-...+...|...+++++ .+. +.+.+.+..... ...-++.| - +.+... +
T Consensus 24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--~~~~~~~~-------~----~~ll~~---~ 87 (361)
T 3u3x_A 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY--ADARRIAT-------A----EEILED---E 87 (361)
T ss_dssp --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS--SSCCEESC-------H----HHHHTC---T
T ss_pred ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc--CCCcccCC-------H----HHHhcC---C
Confidence 5579999999765443445555556788866 444 455554444433 11112222 1 233322 4
Q ss_pred CceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 108 RIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 108 ~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
.+-+|+++.... .+.+..|+++|-.=|+-||+. .++..+.++
T Consensus 88 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 133 (361)
T 3u3x_A 88 NIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRR 133 (361)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 566666665433 667899999999999999974 455544443
No 168
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=66.84 E-value=13 Score=34.73 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCC-CceEEEEecCCCHHHHHHH
Q 008655 50 SLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQ-RIPVIMMSAQDEVSVVVKC 126 (558)
Q Consensus 50 ~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~-~iPVIVLSa~~d~e~a~eA 126 (558)
+.....|..+. .+.+..++...... ..|.|++ .| ...|++.++++++.. + ++||++..+-. .+.+.++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~--~~~ipvia~GGI~-~~~i~~~ 165 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVL--PSDIAVFAVGGVT-PENLAQW 165 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTS--CTTCEEEEESSCC-TTTHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhc--cCCCeEEEeCCCC-HHHHHHH
Confidence 44455666543 57889998776543 5899886 22 123678888887642 3 58999888765 6677888
Q ss_pred HHcCCCEEEeC-CC-CH----HHHHHHHHHHH
Q 008655 127 LRLGAADYLVK-PL-RT----NELLNLWTHMW 152 (558)
Q Consensus 127 L~~GA~DYL~K-P~-~~----eeL~~~L~~ll 152 (558)
+++||+.++.= -+ .. .+....++.+.
T Consensus 166 ~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~ 197 (212)
T 2v82_A 166 IDAGCAGAGLGSDLYRAGQSVERTAQQAAAFV 197 (212)
T ss_dssp HHHTCSEEEECTTTCCTTCCHHHHHHHHHHHH
T ss_pred HHcCCCEEEEChHHhCCCCCHHHHHHHHHHHH
Confidence 99999999643 22 22 44555555443
No 169
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=66.34 E-value=41 Score=31.94 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=51.2
Q ss_pred HHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---------HHHHHHHHHhhcCCCCceEEEE
Q 008655 48 VFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDID-LILAEVDLPMTK---------GLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 48 L~~lL~~~gyeV~-~As--dg~EALe~L~~~~~~PD-LIILDi~MP~mD---------GlElL~~Ir~~~~~~~iPVIVL 114 (558)
+.+.+++.|..++ .+. +..+.++.+... .| +|.+ +..++.. .++.+++|++. .++||++-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~---~~~pi~~~ 197 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRI---CRNKVAVG 197 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhh---cCCCEEEE
Confidence 3444445565544 222 456666666543 34 5543 3335433 35677888764 36898887
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 008655 115 SAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~K 137 (558)
.+-...+.+.+++.+||+.++.=
T Consensus 198 GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 198 FGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred eecCCHHHHHHHHHcCCCEEEEc
Confidence 78777788889999999999763
No 170
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=65.68 E-value=46 Score=30.93 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=47.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC--------CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLP--------MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP--------~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~ 132 (558)
.+.+..++..... . .+|.|++..-.| ...|++.++++++.. .++||++..+-. .+.+.++++.||+
T Consensus 122 s~~t~~e~~~a~~-~--g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~ 195 (227)
T 2tps_A 122 SAHTMSEVKQAEE-D--GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGAD 195 (227)
T ss_dssp EECSHHHHHHHHH-H--TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCS
T ss_pred ecCCHHHHHHHHh-C--CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 4578888666554 3 589998632222 123688889988642 238998877665 6667778889999
Q ss_pred EEEe
Q 008655 133 DYLV 136 (558)
Q Consensus 133 DYL~ 136 (558)
.+..
T Consensus 196 gv~v 199 (227)
T 2tps_A 196 GVSM 199 (227)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 171
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=65.45 E-value=15 Score=35.94 Aligned_cols=93 Identities=8% Similarity=0.048 Sum_probs=59.7
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHH
Q 008655 48 VFSLLVKCS-YQVTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVK 125 (558)
Q Consensus 48 L~~lL~~~g-yeV~~Asdg~EALe~L~~~-~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~e 125 (558)
+.+.|...+ .-|+...+.++++++++.. .....+|=+ .+-.-++++++++|++.. +. .+|-..+--+.+.+..
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~--~~-~~iGaGTVlt~~~a~~ 101 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQ--PE-MLIGAGTILNGEQALA 101 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHC--TT-CEEEEECCCSHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhC--CC-CEEeECCcCCHHHHHH
Confidence 455566666 3466777888887776541 113555444 444567999999998753 33 3444445567889999
Q ss_pred HHHcCCCEEEeCCCCHHHHHH
Q 008655 126 CLRLGAADYLVKPLRTNELLN 146 (558)
Q Consensus 126 AL~~GA~DYL~KP~~~eeL~~ 146 (558)
|+++||+-.+. |....++..
T Consensus 102 Ai~AGA~fIvs-P~~~~~vi~ 121 (232)
T 4e38_A 102 AKEAGATFVVS-PGFNPNTVR 121 (232)
T ss_dssp HHHHTCSEEEC-SSCCHHHHH
T ss_pred HHHcCCCEEEe-CCCCHHHHH
Confidence 99999976665 544444443
No 172
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=65.18 E-value=36 Score=33.55 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLV-KCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~-~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
|.|++++|.||.--..-+..+...|. ..+++++ .+. +.+.+-+..... ... ..+.++. + .
T Consensus 1 m~m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~--g~~---------~~~~~~~---l-~-- 63 (319)
T 1tlt_A 1 MSLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW--RIP---------YADSLSS---L-A-- 63 (319)
T ss_dssp ----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH--TCC---------BCSSHHH---H-H--
T ss_pred CCCCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCC---------ccCcHHH---h-h--
Confidence 45678999999986555542444444 3467765 444 333232322222 111 1222333 3 1
Q ss_pred CCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHH
Q 008655 105 ELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLN 146 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~ 146 (558)
..+-+|+++.... .+.+..|++.|..=++.||+. .++...
T Consensus 64 --~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~ 107 (319)
T 1tlt_A 64 --ASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAER 107 (319)
T ss_dssp --TTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHH
T ss_pred --cCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHH
Confidence 2345666665444 567889999999889999975 444433
No 173
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=64.52 E-value=21 Score=35.43 Aligned_cols=101 Identities=10% Similarity=0.194 Sum_probs=65.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-----CCCEEEEECCH--------HHHHHHH----HhcCCCceEEEEeCCCCCCCHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVK-----CSYQVTSVRSP--------RQVIDAL----NAEGSDIDLILAEVDLPMTKGL 94 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~-----~gyeV~~Asdg--------~EALe~L----~~~~~~PDLIILDi~MP~mDGl 94 (558)
.++|=||---..-...+.++|.. .+++|..+.+| +++...+ .+. .||+||.=---|...|-
T Consensus 3 vvKiGiiKlGNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~--~pDfvI~isPN~a~PGP 80 (283)
T 1qv9_A 3 VAKAIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDF--EPDFIVYGGPNPAAPGP 80 (283)
T ss_dssp CEEEEEEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--CCSEEEEECSCTTSHHH
T ss_pred eEEEEEEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHhhhhhhhc--CCCEEEEECCCCCCCCc
Confidence 44554544333333334444432 25666666653 3444443 444 89999988777788898
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
...+++... .++|.|+++.-.... ..++|+..-++||.-+
T Consensus 81 ~~ARE~l~~---~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 81 SKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVK 120 (283)
T ss_dssp HHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEET
T ss_pred hHHHHHHHh---CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEe
Confidence 888888764 789999999755544 5588888889996655
No 174
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.28 E-value=91 Score=32.33 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=61.0
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CCH
Q 008655 33 VRILLCDN----DSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPM------------TKG 93 (558)
Q Consensus 33 irVLIVDD----d~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~------------mDG 93 (558)
..++.+|- ...+.+.+..+-+.. +..|+ .+.+.++|..++.. ..|.|.+.+. |+ ...
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p~ 188 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVPM 188 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCCH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHHH
Confidence 45777763 233333443333322 45554 47899999888765 4899998543 32 223
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++++.++... .. |||.-.+-.+...+.+||.+||+....
T Consensus 189 l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 189 LTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4445444432 22 888888888899999999999988754
No 175
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=63.43 E-value=65 Score=33.37 Aligned_cols=91 Identities=11% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC---------C--CCCHHHHHHHHHhhcCCCC
Q 008655 43 NSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL---------P--MTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 43 ~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M---------P--~mDGlElL~~Ir~~~~~~~ 108 (558)
...+.+..+-+.. +..|+ ...+.++|..+.+ . .+|.|++...- . +...++++..+.+......
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3444444433444 55554 5678877776654 3 58988883210 0 2234666666665322247
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+|||...+-.+...+.+++.+||+.+..
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 8999888888899999999999998854
No 176
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=63.27 E-value=17 Score=36.23 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCCceEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRLGAADYLVKPLRTNELLNL 147 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~------~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~ 147 (558)
++++++|++.. ..+||++++-. .-...+.++.++|++.+|.-.+..++....
T Consensus 83 ~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~ 140 (267)
T 3vnd_A 83 FDIITKVRAQH--PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPF 140 (267)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHH
Confidence 66777777642 57899998743 235678899999999999987777664443
No 177
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=63.11 E-value=29 Score=34.66 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=59.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|.|++++|.||.--..-+..+..+....+++++ .+. +.+.+.+..... ...-+. .|--+++ ..
T Consensus 1 M~m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~-------~~~~~ll----~~-- 65 (330)
T 3e9m_A 1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKEL--AIPVAY-------GSYEELC----KD-- 65 (330)
T ss_dssp --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHT--TCCCCB-------SSHHHHH----HC--
T ss_pred CCCCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHc--CCCcee-------CCHHHHh----cC--
Confidence 456789999999876666555555444577776 333 344444443332 111011 1222232 21
Q ss_pred CCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 106 LQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 106 ~~~iPVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
..+-+|++... .-.+.+..|+++|..=|+.||+. .++....++
T Consensus 66 -~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~ 112 (330)
T 3e9m_A 66 -ETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFA 112 (330)
T ss_dssp -TTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHH
T ss_pred -CCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHH
Confidence 34455555543 33677889999999999999975 455444333
No 178
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=62.80 E-value=46 Score=33.65 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCcCCCCCcEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EEC-CHHHHHHHHHhcCCCc-eEEEEeCCCCCCCHHHHHHHH
Q 008655 25 DGFIDRSKVRILLCDNDSNSSDAVFSLL-VKCSYQVT-SVR-SPRQVIDALNAEGSDI-DLILAEVDLPMTKGLKMLKYI 100 (558)
Q Consensus 25 ~~~m~m~~irVLIVDDd~~~r~~L~~lL-~~~gyeV~-~As-dg~EALe~L~~~~~~P-DLIILDi~MP~mDGlElL~~I 100 (558)
+-...|+++||.||.--..-+..+..+. ...+++++ .+. +.+.+-+..... .+ .-+..| - +.+
T Consensus 16 ~~~~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--g~~~~~~~~-------~----~~l 82 (357)
T 3ec7_A 16 NLYFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY--AIEAKDYND-------Y----HDL 82 (357)
T ss_dssp ------CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH--TCCCEEESS-------H----HHH
T ss_pred ccccCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh--CCCCeeeCC-------H----HHH
Confidence 4455677899999998876666666555 33578876 444 333333333333 21 112222 2 222
Q ss_pred HhhcCCCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 101 TRDKELQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
-.. +.+-+|+++.. .-.+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 83 l~~---~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~ 133 (357)
T 3ec7_A 83 IND---KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEA 133 (357)
T ss_dssp HHC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred hcC---CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHH
Confidence 222 34455655543 33678899999999999999974 4555544443
No 179
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=62.70 E-value=3.3 Score=41.25 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=35.1
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHhcCCCceEEEEe
Q 008655 32 KVRILLCDND--SNSSDAVFSLLVKCSYQVTSVRSPRQ--VIDALNAEGSDIDLILAE 85 (558)
Q Consensus 32 ~irVLIVDDd--~~~r~~L~~lL~~~gyeV~~Asdg~E--ALe~L~~~~~~PDLIILD 85 (558)
+.+||||+++ +.....|.+.|+..||+|.......- -.+.|. .+|+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 4699999988 66778899999999998876553221 123343 58999887
No 180
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=62.33 E-value=59 Score=32.21 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=72.1
Q ss_pred CCcEEEEEeCCHH-HHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 31 SKVRILLCDNDSN-SSDAVFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 31 ~~irVLIVDDd~~-~r~~L~~lL~~~gyeV~-~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
..++++|+.+.+. ....+..+....+ .++ ... +.++..+.+. ..|++++-... +.-|+.+++.+.
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma----- 352 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC----- 352 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH-----
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH-----
Confidence 3578888877653 3366777777777 444 333 5666666664 46888875543 445677777775
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
..+|||.. ... ...+.+..| .+++..|.+.++|...|..++.
T Consensus 353 ~G~Pvi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 353 LGAIPIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp TTCEEEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCCeEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 56788763 322 344455567 8999999999999999998887
No 181
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=61.51 E-value=64 Score=32.50 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHHHhh
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDL-ILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~As-dg~EALe~L~~~~~~PDL-IILDi~MP~mDGlElL~~Ir~~ 103 (558)
|.|+++||.||.--..-+......|... +++|. .+. +.+. +.+. .+.+ ++-|+ +.+-..
T Consensus 1 M~m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~----~~~~--~~~~~~~~~~-----------~~ll~~ 63 (358)
T 3gdo_A 1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE----VKRD--FPDAEVVHEL-----------EEITND 63 (358)
T ss_dssp -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH----HHHH--CTTSEEESST-----------HHHHTC
T ss_pred CCCCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH----HHhh--CCCCceECCH-----------HHHhcC
Confidence 4567899999998766555455555544 68876 333 3433 2221 1122 22222 223222
Q ss_pred cCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
+.+-+|+++.... .+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 64 ---~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~ 111 (358)
T 3gdo_A 64 ---PAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRA 111 (358)
T ss_dssp ---TTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred ---CCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHH
Confidence 4456666665433 778999999999999999975 4555444433
No 182
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=60.69 E-value=25 Score=33.48 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHH
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDE------VSVVVKCLRLGAADYLVKPLRTNE 143 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d------~e~a~eAL~~GA~DYL~KP~~~ee 143 (558)
+++++++|++. ..+||++++.... .+.+..++++||+.++.-.....+
T Consensus 68 ~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~ 121 (248)
T 1geq_A 68 AFWIVKEFRRH---SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFH 121 (248)
T ss_dssp HHHHHHHHHTT---CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGG
T ss_pred HHHHHHHHHhh---CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhh
Confidence 47788888864 4679888874332 567888999999999986555544
No 183
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=60.36 E-value=43 Score=31.74 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCCC---HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 63 RSPRQVIDALNAEGSDID-LILAEVDLPMTK---GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PD-LIILDi~MP~mD---GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+..+..+.+.+. ..| |.+.|....+.. -++++++|++. ..+|||+...-.+.+.+.+++..||+.++.
T Consensus 31 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 31 GDPVEAARAYDEA--GADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp TCHHHHHHHHHHH--TCSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHc--CCCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 3566666666554 345 455576543332 24557777653 579999999888899999999999988765
No 184
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=60.34 E-value=27 Score=34.31 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=46.7
Q ss_pred CceEEEEeCCC--CCCC--------------------HHHHHHHHHhhcCCCCceEEEEecC------CCHHHHHHHHHc
Q 008655 78 DIDLILAEVDL--PMTK--------------------GLKMLKYITRDKELQRIPVIMMSAQ------DEVSVVVKCLRL 129 (558)
Q Consensus 78 ~PDLIILDi~M--P~mD--------------------GlElL~~Ir~~~~~~~iPVIVLSa~------~d~e~a~eAL~~ 129 (558)
..|+|-+++-. |.+| +++++++|++.. ..+||++++-. .....+..+.++
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~a 121 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQV 121 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHHc
Confidence 58888888743 2233 456688888642 46899887622 225677889999
Q ss_pred CCCEEEeCCCCHHHHHHHH
Q 008655 130 GAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 130 GA~DYL~KP~~~eeL~~~L 148 (558)
||+.++.-.+..+++...+
T Consensus 122 Gadgii~~d~~~e~~~~~~ 140 (268)
T 1qop_A 122 GVDSVLVADVPVEESAPFR 140 (268)
T ss_dssp TCCEEEETTCCGGGCHHHH
T ss_pred CCCEEEEcCCCHHHHHHHH
Confidence 9999999877765544443
No 185
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=59.75 E-value=38 Score=32.50 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCceEEEE-eCC----CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 65 PRQVIDALNAEGSDIDLILA-EVD----LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIIL-Di~----MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
..+..+.+... ..+.|++ ++. +.+. .++++++|++. ..+|||...+-.+.+.+.++++.||+.++.=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGY-DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCC-CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCC-CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 45655555554 4565554 443 2222 37899999864 5789999999898889999999999998654
No 186
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=59.53 E-value=62 Score=33.15 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=71.1
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~-~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.++++||.+.+ ..+..|..+....+-.|. ... +.++..+++.. .|++++--. -..-|+.+++.+. ..
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma-----~G 389 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR-----YG 389 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH-----HT
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH-----CC
Confidence 57888888765 356677777766553343 223 44444566653 588877543 2344667777765 46
Q ss_pred ceEEEEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLG---------AADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~G---------A~DYL~KP~~~eeL~~~L~~ll 152 (558)
+|||+... .-..+.+..| ..+++..|.+.++|...|..++
T Consensus 390 ~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 390 CIPVVART----GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp CEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred CCEEEeCC----CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 78886432 2345666777 7899999999999999999887
No 187
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=59.37 E-value=66 Score=28.76 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=45.2
Q ss_pred CcEEEEEeCCHHHH--HHHHHHHHhCCCEEE-EE---C-CHHHHHHHH----HhcCCCceEEEEeCCCCCCC--------
Q 008655 32 KVRILLCDNDSNSS--DAVFSLLVKCSYQVT-SV---R-SPRQVIDAL----NAEGSDIDLILAEVDLPMTK-------- 92 (558)
Q Consensus 32 ~irVLIVDDd~~~r--~~L~~lL~~~gyeV~-~A---s-dg~EALe~L----~~~~~~PDLIILDi~MP~mD-------- 92 (558)
..|||++.|+-... ..|.+.|... ..|. .. . .....++.+ ... +||+|++.+..-+..
T Consensus 20 ~prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~Vvi~~G~ND~~~~~~~~~~ 96 (200)
T 4h08_A 20 LPHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKNT--KFDVIHFNNGLHGFDYTEEEYDK 96 (200)
T ss_dssp SCEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHHS--CCSEEEECCCSSCTTSCHHHHHH
T ss_pred CCeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhcC--CCCeEEEEeeeCCCCCCHHHHHH
Confidence 45999999997642 2344555432 3343 11 1 122233322 233 799999977665431
Q ss_pred -HHHHHHHHHhhcCCCCceEEEEec
Q 008655 93 -GLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 93 -GlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
=-+++++|++.. +..+||+++.
T Consensus 97 ~l~~ii~~l~~~~--p~~~ii~~~~ 119 (200)
T 4h08_A 97 SFPKLIKIIRKYA--PKAKLIWANT 119 (200)
T ss_dssp HHHHHHHHHHHHC--TTCEEEEECC
T ss_pred HHHHHHHHHhhhC--CCccEEEecc
Confidence 124566777654 6678887765
No 188
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=58.89 E-value=78 Score=29.93 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCCC-C--HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC----
Q 008655 66 RQVIDALNAEGSDID-LILAEVDLPMT-K--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK---- 137 (558)
Q Consensus 66 ~EALe~L~~~~~~PD-LIILDi~MP~m-D--GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K---- 137 (558)
.+.++.+... .++ +++.+..-.++ . .++++++|++. ..+|||...+-.+.+.+.++++.||+.++.=
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~ 229 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFH 229 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHH
Confidence 4544555444 356 44455532221 2 38899999875 4789999988888888999999999998652
Q ss_pred --CCCHHHHHHH
Q 008655 138 --PLRTNELLNL 147 (558)
Q Consensus 138 --P~~~eeL~~~ 147 (558)
|++..++...
T Consensus 230 ~~~~~~~~~~~~ 241 (252)
T 1ka9_F 230 FGEIPIPKLKRY 241 (252)
T ss_dssp TTSSCHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 4555555443
No 189
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=58.77 E-value=95 Score=27.27 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=67.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLV--KC----SYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~--~~----gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
.++++|+.+.+.. ..+..++. .. .+.+.-.-+.++..+++.. .|++|+-.. ...-|+.+++.+.
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama---- 119 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA---- 119 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH----
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH----
Confidence 4677777754432 23333333 21 2333334456667777764 588886332 2334677777775
Q ss_pred CCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 106 ~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||+... ....+.+..|...++. +.+.++|...|..++..
T Consensus 120 -~G~PvI~~~~----~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 120 -SGKPVIAVNE----GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp -TTCCEEEESS----HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred -cCCcEEEeCC----CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 5678886432 3455667778889998 99999999999988754
No 190
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=58.17 E-value=21 Score=35.51 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=56.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|.|+++||.||.--..-...+..+....+++++ .+. +.+.+.+..... ...-++. |- +.+...
T Consensus 1 M~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~--~~~~~~~-------~~----~~ll~~-- 65 (329)
T 3evn_A 1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY--HLPKAYD-------KL----EDMLAD-- 65 (329)
T ss_dssp ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC--CCSCEES-------CH----HHHHTC--
T ss_pred CCCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc--CCCcccC-------CH----HHHhcC--
Confidence 456789999999876665555555444567765 333 333332222221 1111111 22 223222
Q ss_pred CCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 106 LQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 106 ~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+.+-+|+++... -.+.+..|++.|..=|+.||+. .++..+.++
T Consensus 66 -~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~ 112 (329)
T 3evn_A 66 -ESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFA 112 (329)
T ss_dssp -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred -CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHH
Confidence 345566665433 3667889999999999999975 455544433
No 191
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=58.13 E-value=93 Score=30.27 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHH
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNEL 144 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL 144 (558)
..+..+.+. ..|++++.- |.-+++.+. ..+|||+....... .+.+..| ..++..+ +.++|
T Consensus 273 ~~~~~~~~~----~ad~~v~~s------g~~~lEA~a-----~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~l 332 (375)
T 3beo_A 273 VIDFHNVAA----RSYLMLTDS------GGVQEEAPS-----LGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETI 332 (375)
T ss_dssp HHHHHHHHH----TCSEEEECC------HHHHHHHHH-----HTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHH
T ss_pred HHHHHHHHH----hCcEEEECC------CChHHHHHh-----cCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHH
Confidence 345555554 357777653 544555554 46798866321222 3346778 8888876 99999
Q ss_pred HHHHHHHHHHH
Q 008655 145 LNLWTHMWRRR 155 (558)
Q Consensus 145 ~~~L~~llr~~ 155 (558)
.+.+..++...
T Consensus 333 a~~i~~ll~~~ 343 (375)
T 3beo_A 333 FSLADELLSDK 343 (375)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHhCh
Confidence 99999888643
No 192
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=57.87 E-value=37 Score=33.07 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=67.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
.++++|+.+.+. ..+..++...+. .|......++..+++.. .|++++-... ..-|+.+++.+. ..+
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a-----~G~ 295 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT-----AGL 295 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH-----HTC
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH-----CCC
Confidence 457778876542 445555554442 34444444455555543 4777775432 334677777775 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVK-PLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~K-P~~~eeL~~~L~~llr~ 154 (558)
|||........ +.+..|..+++.. |.+.++|.+.+..++..
T Consensus 296 Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 296 PVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp CEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred CEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 88865433333 3455677889887 89999999999988764
No 193
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=57.08 E-value=9.8 Score=38.09 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=49.4
Q ss_pred CCcEEEEEeC-----CHHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHhcCCCceEEEEeCCCCCCCH--HHHH
Q 008655 31 SKVRILLCDN-----DSNSSDAVFSLLVKCS-YQVTSVRSPR-----QVIDALNAEGSDIDLILAEVDLPMTKG--LKML 97 (558)
Q Consensus 31 ~~irVLIVDD-----d~~~r~~L~~lL~~~g-yeV~~Asdg~-----EALe~L~~~~~~PDLIILDi~MP~mDG--lElL 97 (558)
++++||||.. -+.....|..+|++.| |+|.+..+.. +.+. ... ..+|+||++..+...+. .+.+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~--~~L-~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV--LDF-SPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC--CCC-TTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh--hhh-hcCCEEEEeCCCCcCCHHHHHHH
Confidence 5799999987 3666788999999888 9998776531 2221 112 26999998886544432 2222
Q ss_pred HHHHhhcCCCCceEEEEe
Q 008655 98 KYITRDKELQRIPVIMMS 115 (558)
Q Consensus 98 ~~Ir~~~~~~~iPVIVLS 115 (558)
....+ ....+|++=
T Consensus 80 ~~yV~----~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQ----NGGGVVIYH 93 (281)
T ss_dssp HHHHH----TTCEEEEEG
T ss_pred HHHHH----cCCCEEEEe
Confidence 22222 346777664
No 194
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=56.86 E-value=22 Score=36.12 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=55.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQ----------VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gye----------V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
++++||-+.+.-...|.+++.+.|.. |.......+...++. ..|++++--..-+.-|..+++.+.
T Consensus 226 ~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAmA- 300 (374)
T 2xci_A 226 LKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPTC- 300 (374)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHHT-
T ss_pred cEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHHH-
Confidence 56666666554334455555554432 222221223333332 247766522111112333555443
Q ss_pred hcCCCCceEEEEecCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKC-LRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eA-L~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||.-+...+...+.+. ...| ++..+-+.++|...+..++..
T Consensus 301 ----~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 301 ----WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp ----TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred ----hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 67899852233333333333 3455 455567889999999888764
No 195
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=56.47 E-value=47 Score=33.07 Aligned_cols=97 Identities=9% Similarity=0.056 Sum_probs=54.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-------CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKC-------SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKY 99 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~-------gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~ 99 (558)
.|+++||-||.--..-+..+..+.... +.+|. .+. +.+.+-+..... ...-+..|+ +.
T Consensus 3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~--g~~~~~~d~-----------~~ 69 (390)
T 4h3v_A 3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKL--GWSTTETDW-----------RT 69 (390)
T ss_dssp -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHH--TCSEEESCH-----------HH
T ss_pred CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHc--CCCcccCCH-----------HH
Confidence 367899999985433333333222211 23554 444 555554444443 222333332 33
Q ss_pred HHhhcCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCCH
Q 008655 100 ITRDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLRT 141 (558)
Q Consensus 100 Ir~~~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~~ 141 (558)
+... +.+-+|+++.... .+.+..|+++|-.=|+-||+..
T Consensus 70 ll~~---~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~ 110 (390)
T 4h3v_A 70 LLER---DDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLAN 110 (390)
T ss_dssp HTTC---TTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCS
T ss_pred HhcC---CCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCccc
Confidence 3332 4566676665443 6789999999999999999863
No 196
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=56.34 E-value=13 Score=34.37 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceEEE--EecCCCHH-HHHHHHHcCCCEEEeCC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIM--MSAQDEVS-VVVKCLRLGAADYLVKP 138 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPVIV--LSa~~d~e-~a~eAL~~GA~DYL~KP 138 (558)
+.+++++.++... ..+-++++.++- .+|.++++.|++.. ++.||++ ... +-.+ .+..+.++||+.+...+
T Consensus 11 ~~~~~~~~~~~~~--~~v~~iev~~~~~~~~g~~~i~~l~~~~--~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~ 85 (207)
T 3ajx_A 11 STEAALELAGKVA--EYVDIIELGTPLIKAEGLSVITAVKKAH--PDKIVFADMKTM-DAGELEADIAFKAGADLVTVLG 85 (207)
T ss_dssp CHHHHHHHHHHHG--GGCSEEEECHHHHHHHCTHHHHHHHHHS--TTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEET
T ss_pred CHHHHHHHHHHhh--ccCCEEEECcHHHHhhCHHHHHHHHHhC--CCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEec
Confidence 5667777765542 222335665542 35678889998752 4678875 332 2133 47889999999998777
Q ss_pred CCH
Q 008655 139 LRT 141 (558)
Q Consensus 139 ~~~ 141 (558)
...
T Consensus 86 ~~~ 88 (207)
T 3ajx_A 86 SAD 88 (207)
T ss_dssp TSC
T ss_pred cCC
Confidence 665
No 197
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=55.95 E-value=1.5e+02 Score=29.44 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=61.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
.++++||.||.--..-...+..+... .+++++ .+. +.+.+.+..... .+-..+ |--+++ . .
T Consensus 10 ~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~----~~~~~~------~~~~ll---~-~-- 73 (354)
T 3q2i_A 10 TDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT----GARGHA------SLTDML---A-Q-- 73 (354)
T ss_dssp CSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH----CCEEES------CHHHHH---H-H--
T ss_pred CCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc----CCceeC------CHHHHh---c-C--
Confidence 44679999999876666666555555 478866 444 444444444333 221211 222332 2 2
Q ss_pred CCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 106 ~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+.+-+|+++.... .+.+..|+++|..=|+.||+. .++..+.++
T Consensus 74 -~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~ 120 (354)
T 3q2i_A 74 -TDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVK 120 (354)
T ss_dssp -CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHH
T ss_pred -CCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHH
Confidence 3455666655433 667889999999999999975 455444433
No 198
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=55.88 E-value=53 Score=33.68 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=68.3
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDS-NSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~-~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
.++++||.+.+ .....|..+....+-.|. ... +.++..+++.. .|++++--. .+.-|+.+++.+. ..
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma-----~G 390 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK-----YG 390 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH-----HT
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH-----CC
Confidence 46777777654 356666666666543342 222 44443455553 477776443 2344666777765 46
Q ss_pred ceEEEEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLG---------AADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~G---------A~DYL~KP~~~eeL~~~L~~ll 152 (558)
+|||+... .-..+.+..| ..+++..|.+.++|...|..++
T Consensus 391 ~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 391 TLPLVRRT----GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp CEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred CCEEECCC----CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 78876422 2345666777 8899999999999999999887
No 199
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=55.66 E-value=91 Score=31.45 Aligned_cols=86 Identities=10% Similarity=0.217 Sum_probs=55.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCC-------------------------CCC----------CCHHHHHHHHHhhc
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVD-------------------------LPM----------TKGLKMLKYITRDK 104 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~-------------------------MP~----------mDGlElL~~Ir~~~ 104 (558)
..+.+..|++..+.. .+|+|.+... |+. ...++++++|...
T Consensus 130 v~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~- 205 (297)
T 4adt_A 130 CGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL- 205 (297)
T ss_dssp EEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH-
T ss_pred EEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh-
Confidence 367788888877754 3788877633 110 1235778888764
Q ss_pred CCCCceEEE--EecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHH
Q 008655 105 ELQRIPVIM--MSAQDEVSVVVKCLRLGAADYLV-----KPLRTNELLNLWTHM 151 (558)
Q Consensus 105 ~~~~iPVIV--LSa~~d~e~a~eAL~~GA~DYL~-----KP~~~eeL~~~L~~l 151 (558)
..+|||+ .++-.+.+.+.+++.+||+.++. |.-++.+....+...
T Consensus 206 --~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~a 257 (297)
T 4adt_A 206 --KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMA 257 (297)
T ss_dssp --TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHH
T ss_pred --cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHH
Confidence 4578874 44566889999999999999975 333444444433333
No 200
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=55.64 E-value=67 Score=27.56 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=48.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--cCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNA--EGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~--~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|..++|.||.| +.... -+.-.|+++..+.+.+++.+.++. ....+.||++.-.+-. .--+.+.+++.. .
T Consensus 1 m~~mkiaVIgD-~dtv~----GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~---~ 71 (109)
T 2d00_A 1 MVPVRMAVIAD-PETAQ----GFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMRG---R 71 (109)
T ss_dssp CCCCCEEEEEC-HHHHH----HHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTTC---C
T ss_pred CCccEEEEEeC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHhC---C
Confidence 45678999998 44433 233458888888888877665543 1126889999877655 233455666532 4
Q ss_pred CceEEEEe
Q 008655 108 RIPVIMMS 115 (558)
Q Consensus 108 ~iPVIVLS 115 (558)
..|+|+.-
T Consensus 72 ~~P~Il~I 79 (109)
T 2d00_A 72 DLPVLLPI 79 (109)
T ss_dssp CCCEEEEE
T ss_pred CCeEEEEE
Confidence 46777654
No 201
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=55.42 E-value=90 Score=31.18 Aligned_cols=101 Identities=9% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
+++||.||.--..-+. +...|... +++++ .+. +.+.+.+..... .. +..+.+ +.+-.. .
T Consensus 4 ~~~~vgiiG~G~~g~~-~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~--g~---------~~~~~~---~~~l~~---~ 65 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYV-MADAYTKSEKLKLVTCYSRTEDKREKFGKRY--NC---------AGDATM---EALLAR---E 65 (354)
T ss_dssp CCEEEEEECCSHHHHH-HHHHHTTCSSEEEEEEECSSHHHHHHHHHHH--TC---------CCCSSH---HHHHHC---S
T ss_pred CcceEEEEccCHHHHH-HHHHHHhCCCcEEEEEECCCHHHHHHHHHHc--CC---------CCcCCH---HHHhcC---C
Confidence 4689999998765544 44455444 78866 444 444444443332 11 111211 222222 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
.+-+|+++... -.+.+..|++.|..=|+.||+. .++..+.++
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~ 111 (354)
T 3db2_A 66 DVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQ 111 (354)
T ss_dssp SCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHH
Confidence 45566665433 3678889999999999999965 455544443
No 202
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=54.94 E-value=99 Score=30.29 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=56.0
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 33 VRILLC-DNDSNSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 33 irVLIV-DDd~~~r~~L~~lL~~~gyeV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++++++ .+.+..+..+.+++...+ .|.... ...+..+++. ..|++++.- .|+ +++.+. ..+
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~a-----~G~ 294 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGAA-----LGV 294 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHHH-----TTC
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHHH-----cCC
Confidence 456664 555545555555543221 343332 2334445554 357777642 355 444443 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||+.......... ++.| ..++.. .+.++|...+..++..
T Consensus 295 PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 295 PVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp CEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred CEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 99976443332322 4556 467763 5889999999888753
No 203
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=54.48 E-value=1.4e+02 Score=30.59 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=55.7
Q ss_pred EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc--CCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 58 QVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK--ELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 58 eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~--~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
.++..-...+.++++... .+|.|++|++-...+--++...|+... .....+++|=+...+...+..+++.|+..++
T Consensus 45 g~~l~i~~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIm 122 (339)
T 1izc_A 45 GVAHGIPSTFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIV 122 (339)
T ss_dssp EEEECSCCHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEE
T ss_pred EEEEECCCHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEE
Confidence 334333344455555544 699999999776666555555555421 1112667776766677888999999998754
Q ss_pred e-CCCCHHHHHHHHH
Q 008655 136 V-KPLRTNELLNLWT 149 (558)
Q Consensus 136 ~-KP~~~eeL~~~L~ 149 (558)
. |=-+.+++...+.
T Consensus 123 lP~V~saee~~~~~~ 137 (339)
T 1izc_A 123 IPHVETVEEVREFVK 137 (339)
T ss_dssp ETTCCCHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 4 3345677665443
No 204
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=54.30 E-value=68 Score=27.57 Aligned_cols=94 Identities=7% Similarity=0.098 Sum_probs=49.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
...|.++|.++...+.+. ..|+.++... +-.+.++.+... ..|+||+-+.-.. .-..++..++... +.+.
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~~~~-~n~~~~~~a~~~~--~~~~ 100 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHLE--CAKWLILTIPNGY-EAGEIVASARAKN--PDIE 100 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTGG--GCSEEEECCSCHH-HHHHHHHHHHHHC--SSSE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCcc--cCCEEEEECCChH-HHHHHHHHHHHHC--CCCe
Confidence 356777777776544332 3466554322 223334433222 5788876543211 1233445555543 5666
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
||+... +.+......++||+..+.
T Consensus 101 iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 101 IIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 665553 344556667899987774
No 205
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=54.28 E-value=1.5e+02 Score=31.69 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=66.5
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHH
Q 008655 33 VRILLCD----NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKGL 94 (558)
Q Consensus 33 irVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----------~mDGl 94 (558)
..++++| +.......+..+-+.. +..|+ ...+.++|..++.. ..|.|++.+.-- +...+
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~ 320 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQI 320 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCHH
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccHH
Confidence 5677776 4445556666665554 33333 57788888887765 489998753211 12345
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+++..+.+......+|||.-.+-.+...+.+|+.+||+..+.
T Consensus 321 ~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 321 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 556666542211368999887888899999999999988864
No 206
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=54.03 E-value=61 Score=33.82 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHH---hcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALN---AEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~---~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
..|+++||.||---..-+..+..+....++++. .+. +.+.+-+... ..+ .+++-+.+- ...| ++.+-.
T Consensus 16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g-~~~~~~~~~--~~~~----~~~ll~ 88 (444)
T 2ixa_A 16 FNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNG-KKPAKVFGN--GNDD----YKNMLK 88 (444)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTT-CCCCEEECS--STTT----HHHHTT
T ss_pred CCCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcC-CCCCceecc--CCCC----HHHHhc
Confidence 346679999999876666655544444478875 444 3333333222 211 122222210 0112 233332
Q ss_pred hcCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
. +.+-+|+++... -.+.+.+||++|..=|+-||+. .++..+.++
T Consensus 89 ~---~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~ 136 (444)
T 2ixa_A 89 D---KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVK 136 (444)
T ss_dssp C---TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHH
T ss_pred C---CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHH
Confidence 2 345666666533 3678899999999999999975 455544443
No 207
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=54.01 E-value=83 Score=33.65 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCC--------------CCCCCHHHHHHHHHhhcCC
Q 008655 44 SSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD--------------LPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 44 ~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~--------------MP~mDGlElL~~Ir~~~~~ 106 (558)
..+.+..+-+.. +..|+ .+.+.++|..+... ..|.|.+... +|....+.++.++...
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~--- 356 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR--- 356 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG---
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh---
Confidence 344455544444 55554 46788888777655 3788877432 1222345667777653
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~ 139 (558)
..+|||...+-.+...+.+++.+||+.. +-.++
T Consensus 357 ~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 357 FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 4789998888888999999999999887 55555
No 208
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=53.82 E-value=52 Score=33.27 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 107 QRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 107 ~~iPVIVLSa--~~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+.+-+|++.. ..-.+.+..|+++|..=|+-||+. .++..+.++
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~ 128 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVK 128 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHH
Confidence 3455555554 445788999999999999999974 455554443
No 209
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=53.52 E-value=1.9e+02 Score=29.12 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--C------------HHHHHHHHHh
Q 008655 40 NDSNSSDAVFSLLVKC-SYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLPMT--K------------GLKMLKYITR 102 (558)
Q Consensus 40 Dd~~~r~~L~~lL~~~-gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--D------------GlElL~~Ir~ 102 (558)
+.....+.+..+-+.. +.-|+ ...+.++|..++.. ..|.|++.-. ++. + .++++.++..
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4445556666655554 34333 36788888887765 4788888432 221 1 4677888876
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPL 139 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~ 139 (558)
. ..+|||.-.+-.+...+.+|+.+||+.. +-+++
T Consensus 208 ~---~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~ 242 (336)
T 1ypf_A 208 A---ASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLF 242 (336)
T ss_dssp T---CSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGG
T ss_pred H---cCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhh
Confidence 4 4799999888888999999999999887 44454
No 210
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=53.30 E-value=66 Score=32.54 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=52.5
Q ss_pred HhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCC--CCCH----------HHHHHHH----HhhcCCCCceEEEEe
Q 008655 53 VKCSY-QVTSVRSPRQVIDALNAEGSDIDLILAEVDLP--MTKG----------LKMLKYI----TRDKELQRIPVIMMS 115 (558)
Q Consensus 53 ~~~gy-eV~~Asdg~EALe~L~~~~~~PDLIILDi~MP--~mDG----------lElL~~I----r~~~~~~~iPVIVLS 115 (558)
++.|+ .+.++.|.++|..+... .||+|++...+- +.-| .+.++.+ ++.. +++.|+.-.
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vn--pdvivLc~g 234 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIR--DDIIILSHG 234 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHC--SCCEEEEES
T ss_pred HHCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhC--CCcEEEecC
Confidence 34575 45589999999999865 599999776532 2222 3344333 3322 555444444
Q ss_pred -cCCCHHHHHHHHHc--CCCEEEeCC
Q 008655 116 -AQDEVSVVVKCLRL--GAADYLVKP 138 (558)
Q Consensus 116 -a~~d~e~a~eAL~~--GA~DYL~KP 138 (558)
.-...+.+..++++ |++.|+.-.
T Consensus 235 GpIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 235 GPIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp TTCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCCCCHHHHHHHHhcCCCccEEEeeh
Confidence 34678899999999 999999753
No 211
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=53.06 E-value=1.2e+02 Score=29.99 Aligned_cols=102 Identities=9% Similarity=0.119 Sum_probs=58.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++||.||.--..-...+..+....+++++ .+. +.+.+.+..... ...-+..| - +.+-.. +.+
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~~~-------~----~~ll~~---~~~ 65 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL--GVEKAYKD-------P----HELIED---PNV 65 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH--TCSEEESS-------H----HHHHHC---TTC
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh--CCCceeCC-------H----HHHhcC---CCC
Confidence 57999999766555544444443467766 444 444444444433 22222222 1 222222 345
Q ss_pred eEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 110 PVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 110 PVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
-+|+++.... .+.+..|++.|..=++.||+. .++....++
T Consensus 66 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~ 109 (344)
T 3ezy_A 66 DAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIE 109 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHH
T ss_pred CEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 5666655433 667889999999999999964 455444433
No 212
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=52.40 E-value=1.6e+02 Score=29.24 Aligned_cols=104 Identities=10% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVK--CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~--~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
..++||.||.--..+.......|.. .+++++ .+. +.+.+.+..+.. ...-++.| ++.+-..
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--~~~~~~~~-----------~~~ll~~-- 80 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV--GNPAVFDS-----------YEELLES-- 80 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH--SSCEEESC-----------HHHHHHS--
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh--CCCcccCC-----------HHHHhcC--
Confidence 3468999999874444444444544 357765 444 444444444433 11122222 2233222
Q ss_pred CCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 106 LQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 106 ~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+.+-+|+++... -.+.+..|+++|..=|+-||+. .++..+.++
T Consensus 81 -~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 127 (340)
T 1zh8_A 81 -GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVE 127 (340)
T ss_dssp -SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred -CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 345566665533 3678999999999999999974 555544443
No 213
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=51.74 E-value=43 Score=31.83 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=53.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCC-------------
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDLPMTK------------- 92 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-------dg~EALe~L~~~~~~PDLIILDi~MP~mD------------- 92 (558)
++|||..-.-.+-..|...|.+.|++|.... +.....+.+... .+|+||--......+
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~--~~d~vi~~a~~~~~~~~~~~~~~~~~~n 83 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEI--RPHIIIHCAAYTKVDQAEKERDLAYVIN 83 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHH--CCSEEEECCCCCCHHHHTTCHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhc--CCCEEEECCcccChHHHhcCHHHHHHHH
Confidence 5899999999999999999988899987653 444445555543 589998655443321
Q ss_pred ---HHHHHHHHHhhcCCCCceEEEEec
Q 008655 93 ---GLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 93 ---GlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+++.+++. .+.+|.+|+
T Consensus 84 ~~~~~~l~~~~~~~----~~~~v~~SS 106 (287)
T 3sc6_A 84 AIGARNVAVASQLV----GAKLVYIST 106 (287)
T ss_dssp THHHHHHHHHHHHH----TCEEEEEEE
T ss_pred HHHHHHHHHHHHHc----CCeEEEEch
Confidence 12355555543 347888876
No 214
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=51.62 E-value=62 Score=27.68 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~-Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
..++++|+.+.+. ...+..++...+..|.. .-+..+..+++. ..|++++-.. ...-|+.+++.+. ..+
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama-----~G~ 99 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS-----VGI 99 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH-----TTC
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh-----cCC
Confidence 3678899987654 46677777777765554 223566666664 4688887544 3344677777765 565
Q ss_pred -eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 -PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 -PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||..+...... +.+..|.. +..|.+.++|...+..++..
T Consensus 100 vPvi~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 100 VPVIANSPLSATR---QFALDERS--LFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp CEEEECCTTCGGG---GGCSSGGG--EECTTCHHHHHHHHHHHHHC
T ss_pred CcEEeeCCCCchh---hhccCCce--EEcCCCHHHHHHHHHHHHhC
Confidence 888733222211 12223333 77788999999999988764
No 215
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=51.61 E-value=40 Score=35.91 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=58.8
Q ss_pred CCCcEEEEEeC----CHHHHHHHHHHHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHH
Q 008655 30 RSKVRILLCDN----DSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDID-LILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 30 m~~irVLIVDD----d~~~r~~L~~lL~~-~gyeV~-~As-dg~EALe~L~~~~~~PD-LIILDi~MP~mDGlElL~~Ir 101 (558)
|+++||.||.- -..-+..+..+... .+++|+ .+. +.+.+.+.....+ -+. .++.| ++.+.
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g-~~~~~~~~d-----------~~ell 104 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-LKHATGFDS-----------LESFA 104 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-CTTCEEESC-----------HHHHH
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC-----------HHHHh
Confidence 56799999998 44334444444443 478765 454 4444444444331 111 22222 22333
Q ss_pred hhcCCCCceEEEEecCCC--HHHHHHHHHcC------CCEEEeCCCC--HHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLG------AADYLVKPLR--TNELLNLW 148 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d--~e~a~eAL~~G------A~DYL~KP~~--~eeL~~~L 148 (558)
.. +.+-+|+++.... .+.+..|+++| -.=|+-||+. .++..+.+
T Consensus 105 ~~---~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~ 158 (479)
T 2nvw_A 105 QY---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY 158 (479)
T ss_dssp HC---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH
T ss_pred cC---CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHH
Confidence 32 3556666665433 66788999999 7889999975 44444433
No 216
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=51.43 E-value=31 Score=33.53 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCcEEEEEeCC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHH
Q 008655 30 RSKVRILLCDND--------------------SNSSDAVFSLLVKCSYQVTSVRSPR-----------------QVIDAL 72 (558)
Q Consensus 30 m~~irVLIVDDd--------------------~~~r~~L~~lL~~~gyeV~~Asdg~-----------------EALe~L 72 (558)
|+++|||+|-.. ......|...|.+.|++|..+.... ...+.+
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWL 80 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHH
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHH
Confidence 456799999887 1244556777777899988665321 445555
Q ss_pred HhcCCCceEEEEeCCCC
Q 008655 73 NAEGSDIDLILAEVDLP 89 (558)
Q Consensus 73 ~~~~~~PDLIILDi~MP 89 (558)
+.. +||||++-...+
T Consensus 81 ~~~--~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 81 RTA--DVDVVHDHSGGV 95 (342)
T ss_dssp HHC--CCSEEEECSSSS
T ss_pred Hhc--CCCEEEECCchh
Confidence 554 789888765443
No 217
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=51.00 E-value=97 Score=30.97 Aligned_cols=109 Identities=13% Similarity=0.233 Sum_probs=67.4
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 32 KVRILLCDND---SNSSDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 32 ~irVLIVDDd---~~~r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
.++++|+.+. ......+.+++...+. .|.... +..+..+++.. .|++++-.. .+.-|+.+++.+.
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--- 347 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--- 347 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH---
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH---
Confidence 3677777761 1234556666665543 244333 44677777654 477776432 2334667777765
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||+.. ... ..+.+..|..+++..|.+.++|...|..++..
T Consensus 348 --~G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 348 --SGTPVIAAR-VGG---LPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp --TTCCEEEES-CTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred --cCCCEEecC-CCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 567887643 332 33456678889999999999999999888763
No 218
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=50.92 E-value=84 Score=29.67 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=51.3
Q ss_pred HHHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 50 SLLVKCSYQVT-SV--RSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 50 ~lL~~~gyeV~-~A--sdg~EALe~L~~~~~~PDLIILDi~MP~m-------DGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
+.+...|..+. .+ .+..+.++.+.......|.|+++-..|+. .+++.++++++.. .++||++.-+-..
T Consensus 107 ~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~GGI~~ 184 (228)
T 1h1y_A 107 QSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGGLGP 184 (228)
T ss_dssp HHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESSCST
T ss_pred HHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEECCcCH
Confidence 33444566655 33 23344555443300037899887766753 3466777777653 3778876665443
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008655 120 VSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~K 137 (558)
+.+.++++.||+.++.=
T Consensus 185 -~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 185 -STIDVAASAGANCIVAG 201 (228)
T ss_dssp -TTHHHHHHHTCCEEEES
T ss_pred -HHHHHHHHcCCCEEEEC
Confidence 56777888899998654
No 219
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=50.51 E-value=33 Score=32.70 Aligned_cols=99 Identities=8% Similarity=0.064 Sum_probs=64.2
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 48 VFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL----P-MTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 48 L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M----P-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
....|+..|+.+. -+..+...+..+... +||.|=+|-.+ . ......+++.|.......++. |+..+-++.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l--~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~-viaeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRL--PFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE-VVAEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHS--CCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCE-EEECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCe-EEEEeCCCH
Confidence 4455667798865 556788888888876 89999999632 1 122334555554432223443 446677788
Q ss_pred HHHHHHHHcCCCEE----EeCCCCHHHHHHHHH
Q 008655 121 SVVVKCLRLGAADY----LVKPLRTNELLNLWT 149 (558)
Q Consensus 121 e~a~eAL~~GA~DY----L~KP~~~eeL~~~L~ 149 (558)
+....+.++|++-+ +.||...+++...+.
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 88888889998654 789999998876554
No 220
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=50.40 E-value=43 Score=32.76 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=64.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC------CCCCHHHHHHHHHhh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL------PMTKGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M------P~mDGlElL~~Ir~~ 103 (558)
.++++|+.+.+. ...+..++....-.|. -.-+.++..+++.. .|++++-... ++.-|+.+++.+.
T Consensus 229 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 456777765543 2334444322212233 22344666666653 4777774443 1344667777765
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|||+ +.... ..+.+..| .+++..|.+.++|...|..++..
T Consensus 302 ---~G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 302 ---CGVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp ---TTCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC
T ss_pred ---cCCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC
Confidence 4678876 33222 22345667 89999999999999999888753
No 221
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=50.32 E-value=37 Score=34.33 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDL-ILAEVDLPMTKGLKMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~~Asdg~EALe~L~~~~~~PDL-IILDi~MP~mDGlElL~~Ir~~~~ 105 (558)
|.|+++||.||.--..-+......|.. .++++..+.+.... .+.+. .+.+ +..|+ +.+...
T Consensus 1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~--~~~~~~~~~~-----------~~ll~~-- 63 (362)
T 3fhl_A 1 MSLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKER--YPQASIVRSF-----------KELTED-- 63 (362)
T ss_dssp --CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGTT--CTTSEEESCS-----------HHHHTC--
T ss_pred CCCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHHh--CCCCceECCH-----------HHHhcC--
Confidence 567789999999876655434444544 46887633322111 12111 1122 22222 223322
Q ss_pred CCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 106 LQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 106 ~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
+.+-+|+++.... .+.+..|+++|..=|+-||+. .++..+.++.
T Consensus 64 -~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 111 (362)
T 3fhl_A 64 -PEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIAL 111 (362)
T ss_dssp -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred -CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHH
Confidence 4456666665433 678999999999999999974 5555554443
No 222
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=50.30 E-value=49 Score=31.73 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 63 RSPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PD-LIILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
.+..+..+.+.+. ..| |.+.|....+. .-++++++|++. ..+|||+...-.+.+.+.++++.||+..+.=
T Consensus 30 ~~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 30 ILLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EEHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CCHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 3566666666554 355 44457554322 127888888864 5789999877777788899999999988764
No 223
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=50.18 E-value=38 Score=34.39 Aligned_cols=101 Identities=7% Similarity=0.074 Sum_probs=55.2
Q ss_pred CCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 23 ~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
.....|+-+++||||+.- -.+-..+...|.+ .++|..+.-..+.++.+.. ....+-+|+. |- +.|..+.+
T Consensus 7 ~~~~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~----d~-~~l~~~~~ 76 (365)
T 3abi_A 7 HHHHHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS----NF-DKLVEVMK 76 (365)
T ss_dssp ---------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT----CH-HHHHHHHT
T ss_pred cccccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC----CH-HHHHHHHh
Confidence 344556667889999987 7777788888865 5788766544455555543 3455566653 33 33344332
Q ss_pred hcCCCCceEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC
Q 008655 103 DKELQRIPVIMMS--AQDEVSVVVKCLRLGAADYLVKPL 139 (558)
Q Consensus 103 ~~~~~~iPVIVLS--a~~d~e~a~eAL~~GA~DYL~KP~ 139 (558)
. .+ +|+-+ ..-....+..|++.|++ |+.--+
T Consensus 77 ~---~D--vVi~~~p~~~~~~v~~~~~~~g~~-yvD~s~ 109 (365)
T 3abi_A 77 E---FE--LVIGALPGFLGFKSIKAAIKSKVD-MVDVSF 109 (365)
T ss_dssp T---CS--EEEECCCGGGHHHHHHHHHHHTCE-EEECCC
T ss_pred C---CC--EEEEecCCcccchHHHHHHhcCcc-eEeeec
Confidence 2 23 33332 23346678888999984 665433
No 224
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=50.15 E-value=23 Score=35.69 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=47.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHh
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITR 102 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~ 102 (558)
-++.+||-++.....|++-+....--.+...|+.+++..+.....++|+||+|---- ..+.-++++.|.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 589999999999998888876543223355788888887644323589999995322 1234455555554
No 225
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=49.98 E-value=1.7e+02 Score=28.97 Aligned_cols=102 Identities=9% Similarity=0.179 Sum_probs=59.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EEC-CHHHHHHHHHhcCCCc-eEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLL-VKCSYQVT-SVR-SPRQVIDALNAEGSDI-DLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL-~~~gyeV~-~As-dg~EALe~L~~~~~~P-DLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
++||.||.--..-+..+..+. ...++++. .+. +.+.+.+..... .+ .-+..| - +.+-.. +
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~--g~~~~~~~~-------~----~~ll~~---~ 65 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY--QLNATVYPN-------D----DSLLAD---E 65 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT--TCCCEEESS-------H----HHHHHC---T
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh--CCCCeeeCC-------H----HHHhcC---C
Confidence 578999998766665555555 33578866 444 444444444333 22 122222 1 222222 3
Q ss_pred CceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 108 RIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 108 ~iPVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
.+-+|++... .-.+.+..|++.|..=|+.||+. .++..+.++
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~ 111 (344)
T 3mz0_A 66 NVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVE 111 (344)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHH
Confidence 4556666543 33678889999999999999975 455544443
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=49.77 E-value=56 Score=29.25 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVK--CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~--~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
...+||+||-|+.. .+..++.. .++.+..+.. ....+.+......+|+||+|.. |+. +......+.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~-~~~-~~~~~~~l~ 96 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA-GSL-SVITSAAVM 96 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC-SSS-SHHHHHHHH
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC-CCC-CHHHHHHHH
Confidence 34689999988653 34445443 2467776554 3333444333336999999973 233 333334444
No 227
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=48.45 E-value=57 Score=31.11 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCEEEEEC-----CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR-----SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As-----dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.||++..+. +.. +.++.+... .+|.||+--.-+. .-.+.+++++. ..+|||++..
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~~~~-~~~~~~~~~~~----~giPvV~~~~ 94 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALAT--YPSGIATTIPSDT-AFSKSLQRANK----LNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHT--CCSEEEECCCCSS-TTHHHHHHHHH----HTCCEEEESC
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHc--CCCEEEEeCCCHH-HHHHHHHHHHH----CCCCEEEEcC
Confidence 445555666799987554 333 445555444 7998887432211 11456777765 4689998864
No 228
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=48.44 E-value=25 Score=35.07 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhhcCCCCceEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 008655 92 KGLKMLKYITRDKELQRIPVIMMSA------QDEVSVVVKCLRLGAADYLVKPLRTNELLN 146 (558)
Q Consensus 92 DGlElL~~Ir~~~~~~~iPVIVLSa------~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~ 146 (558)
+.+++++++++.. ..+|||+++= +.-...+.++.++|++.+|.--+..++...
T Consensus 83 ~~~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~ 141 (271)
T 3nav_A 83 ICFELIAQIRARN--PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQP 141 (271)
T ss_dssp HHHHHHHHHHHHC--TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHH
T ss_pred HHHHHHHHHHhcC--CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 3466788887642 5789999972 334567889999999999997677766433
No 229
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.79 E-value=1.3e+02 Score=28.22 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+.+.+.+.||++.... +. .+.++.+... .+|.||+.-.-+. ...+.++++.. ..+|||++..
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 94 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQ--KPDAIIEQLGNLD-VLNPWLQKIND----AGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHH--CCSEEEEESSCHH-HHHHHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEeCCChh-hhHHHHHHHHH----CCCcEEEecC
Confidence 34556667777899877543 22 3455555555 6898887532110 13355666665 5789998864
No 230
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=47.63 E-value=72 Score=29.91 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVRS---P---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asd---g---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+.+.||.+..+.. . .+.++.+... .+|-||+--..+ .+.++.+.+ ..+|||++..
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~ 93 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEILH----QQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHHT----TSSCEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHHH----CCCCEEEEec
Confidence 34455566677998775432 2 2445555544 789888764333 567777765 5789998864
No 231
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=47.41 E-value=75 Score=31.05 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=59.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
|+++||.||.--..-+..+...|.. .++++. .+. +.+.+-+..... .... . .|--++++
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--~~~~-~-------~~~~~ll~-------- 65 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY--RIMP-F-------DSIESLAK-------- 65 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH--TCCB-C-------SCHHHHHT--------
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCC-c-------CCHHHHHh--------
Confidence 5678999999877666545555555 467876 444 444444444333 1111 1 12223332
Q ss_pred CCceEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 107 QRIPVIMMSA--QDEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 107 ~~iPVIVLSa--~~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
.+-+|+++. ..-.+.+..|++.|..=++.||+. .++....++.
T Consensus 66 -~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~ 112 (308)
T 3uuw_A 66 -KCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIEL 112 (308)
T ss_dssp -TCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHH
T ss_pred -cCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHH
Confidence 223454543 334677889999999999999985 4555544443
No 232
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=47.40 E-value=1e+02 Score=29.00 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=59.1
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCC
Q 008655 55 CSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGA 131 (558)
Q Consensus 55 ~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA 131 (558)
.|..++ -+.+..|+.+.++. ..|.|-+ .|. . -|++.++.|+.. .+++||+.+-+-. .+.+.+.+.+||
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI~-~~n~~~~l~aGa 173 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGIK-EEHLPHYAALPN 173 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSCC-GGGHHHHHTCSS
T ss_pred hCCCEEecCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhh--CCCCcEEEeCCCC-HHHHHHHHhCCC
Confidence 454333 57889999887754 4898877 453 2 388999999875 3589998766654 577889999999
Q ss_pred CEEEeCC----CCHHHHHHHHHHHH
Q 008655 132 ADYLVKP----LRTNELLNLWTHMW 152 (558)
Q Consensus 132 ~DYL~KP----~~~eeL~~~L~~ll 152 (558)
+.+..=. -+..++....++++
T Consensus 174 ~~vavgSai~~~d~~~i~~~a~~~~ 198 (207)
T 2yw3_A 174 LLAVGGSWLLQGNLEAVRAKVRAAK 198 (207)
T ss_dssp BSCEEESGGGSSCHHHHHHHHHHHH
T ss_pred cEEEEehhhhCCCHHHHHHHHHHHH
Confidence 7763211 34444555554443
No 233
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=47.36 E-value=2.2e+02 Score=28.61 Aligned_cols=87 Identities=15% Similarity=-0.006 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEeCC---------------------CCCCCHHHHHH
Q 008655 45 SDAVFSLLVKCSYQVT--SV---RSPRQVIDALNAEGSDIDLILAEVD---------------------LPMTKGLKMLK 98 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~--~A---sdg~EALe~L~~~~~~PDLIILDi~---------------------MP~mDGlElL~ 98 (558)
.+.+..+-+..+.-|+ .. .+.++|..+... ..|.|++.-. .-+....+.+.
T Consensus 167 ~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~ 243 (349)
T 1p0k_A 167 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLA 243 (349)
T ss_dssp HHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHH
Confidence 3444444444443333 23 466776665543 4788777421 12356778888
Q ss_pred HHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 99 YITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++.+.. ..+|||...+-.+.+.+.+++.+||+.++.
T Consensus 244 ~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 244 EIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp HHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 887642 479999999999999999999999998854
No 234
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=47.34 E-value=1.1e+02 Score=30.05 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=57.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++||.||.--..-+..+..+....+++++ .+. +.+.+.+..... ... .. +--++ -.. +.+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~--~~-------~~~~~----l~~---~~~ 64 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY--GCE--VR-------TIDAI----EAA---ADI 64 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT--TCE--EC-------CHHHH----HHC---TTC
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh--CCC--cC-------CHHHH----hcC---CCC
Confidence 58999999866555544444444578876 444 444444443332 211 21 22222 222 345
Q ss_pred eEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 110 PVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 110 PVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
-+|++... .-.+.+..|++.|..=|+.||+. .++....++
T Consensus 65 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~ 108 (331)
T 4hkt_A 65 DAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLK 108 (331)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHH
Confidence 56666543 33677889999999999999964 455444433
No 235
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.32 E-value=55 Score=31.61 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
.+++++++++. ..+||++-.+-.+.+.+.+++.+||+.++.=
T Consensus 189 ~~~~i~~v~~~---~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV---TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh---cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 55688888875 4789999888888999999999999999754
No 236
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=47.16 E-value=79 Score=30.99 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=56.7
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 33 VRILLC-DNDSNSSDAVFSLLVKCSYQVTSV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 33 irVLIV-DDd~~~r~~L~~lL~~~gyeV~~A--sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++++|+ .+.+..+..+.+++...+ .|... -...+..+++.. .|++++.- .|. +++.+. ..+
T Consensus 239 ~~l~i~~g~~~~~~~~l~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~S-----g~~-~lEA~a-----~G~ 302 (384)
T 1vgv_A 239 IQIVYPVHLNPNVREPVNRILGHVK-NVILIDPQEYLPFVWLMNH----AWLILTDS-----GGI-QEEAPS-----LGK 302 (384)
T ss_dssp EEEEEECCBCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESS-----STG-GGTGGG-----GTC
T ss_pred eEEEEEcCCCHHHHHHHHHHhhcCC-CEEEeCCCCHHHHHHHHHh----CcEEEECC-----cch-HHHHHH-----cCC
Confidence 555554 434445555555543222 23332 223455555543 47777653 222 333322 578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|||+........ +.++.| ..++..| +.++|.+.+..++..
T Consensus 303 PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 303 PVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp CEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred CEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 998764323322 235668 8898877 999999999988764
No 237
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=47.08 E-value=43 Score=33.17 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=51.1
Q ss_pred CHHHHHHHHHhc-CCCceEEEEeCCCCC--CC--------------------HHHHHHHHHhhcCCCCceEEEEecC---
Q 008655 64 SPRQVIDALNAE-GSDIDLILAEVDLPM--TK--------------------GLKMLKYITRDKELQRIPVIMMSAQ--- 117 (558)
Q Consensus 64 dg~EALe~L~~~-~~~PDLIILDi~MP~--mD--------------------GlElL~~Ir~~~~~~~iPVIVLSa~--- 117 (558)
+.+..++.+... .. .|+|.+++-..+ .| .++++++|++. ..+|||+++-.
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~n~v 103 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLNPV 103 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHH
Confidence 444555554331 13 788888764421 22 35778888864 57899998522
Q ss_pred ---CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008655 118 ---DEVSVVVKCLRLGAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 118 ---~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L 148 (558)
.....+..+.++|++.+|.-.+..+++...+
T Consensus 104 ~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~ 137 (271)
T 1ujp_A 104 LAWGPERFFGLFKQAGATGVILPDLPPDEDPGLV 137 (271)
T ss_dssp HHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHH
T ss_pred HHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 2245677789999999998777665554444
No 238
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=46.90 E-value=39 Score=33.56 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
.|++++-.. .+.-|+.+++.+. ..+|||+..... ..+.+..|-..++..|.+.++|.+.|..++..
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma-----~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA-----CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH-----TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCEEEeccc-cCCCchHHHHHHh-----cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 577776443 2334666777665 567887654322 12345567789999999999999999888764
No 239
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=46.89 E-value=1.5e+02 Score=28.42 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCC--CHHH----HHHHHHcCCCEEEe
Q 008655 67 QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--EVSV----VVKCLRLGAADYLV 136 (558)
Q Consensus 67 EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~--d~e~----a~eAL~~GA~DYL~ 136 (558)
++.+.+.+. ..|+|.+.. + -+++.+++|.+. .++||+...+-. +.+. +.++++.||+.+..
T Consensus 170 ~~a~~a~~~--Gad~i~~~~--~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 170 HAARLGAEL--GADIVKTSY--T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HHHHHHHHT--TCSEEEECC--C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHc--CCCEEEECC--C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 333444444 689988874 2 468899999864 478999988765 3444 66677899998854
No 240
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=46.87 E-value=2e+02 Score=28.20 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=54.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLL-VKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL-~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
+++++|.||.--..-+..+..+. ...+++++ .+..-.+..+.+... ...+.++.| - +.+-.. .
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~~-------~----~~~l~~---~ 70 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTN-------Y----KDMIDT---E 70 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEESC-------H----HHHHTT---S
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccCC-------H----HHHhcC---C
Confidence 35689999998665555555444 33477765 444333334333322 122223322 1 222221 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR 140 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~ 140 (558)
.+-+|+++... -.+.+..+++.|..=++.||+.
T Consensus 71 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~ 105 (346)
T 3cea_A 71 NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLG 105 (346)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCC
T ss_pred CCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCC
Confidence 45566665433 3677889999999888999975
No 241
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=46.68 E-value=42 Score=32.34 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=48.0
Q ss_pred HHHHhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 50 SLLVKCSYQVTSVRS---PRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 50 ~lL~~~gyeV~~Asd---g~EALe~L~~~~~~PDLIILDi~MP~mDG-------lElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
..+++.|..+..+-+ ..+.++.+.. .+|.|++.---|+..| ++-+++|++.. ..++|. +.+--+
T Consensus 106 ~~i~~~G~k~gval~p~t~~e~l~~~l~---~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~-VdGGI~ 179 (228)
T 3ovp_A 106 KDIRENGMKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIE-VDGGVG 179 (228)
T ss_dssp HHHHHTTCEEEEEECTTSCGGGTGGGGG---GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEE-EESSCS
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHhc---cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEE-EeCCcC
Confidence 334555665543332 2233332221 3788877665677655 45567777642 345554 444445
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008655 120 VSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~K 137 (558)
.+.+.++.++||+-++.=
T Consensus 180 ~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 180 PDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp TTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 677889999999998653
No 242
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=46.51 E-value=32 Score=31.43 Aligned_cols=83 Identities=12% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCCcEEEEEeCCHHH----------HHHHHHHHHhCCCEEEEE-----------------C---CHHHHHHHHH----hc
Q 008655 30 RSKVRILLCDNDSNS----------SDAVFSLLVKCSYQVTSV-----------------R---SPRQVIDALN----AE 75 (558)
Q Consensus 30 m~~irVLIVDDd~~~----------r~~L~~lL~~~gyeV~~A-----------------s---dg~EALe~L~----~~ 75 (558)
...++|+++.|+-.. ...|...|...++.|... - ...+.+..+. ..
T Consensus 3 ~~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~ 82 (215)
T 2vpt_A 3 SKTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTH 82 (215)
T ss_dssp -CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhcc
Confidence 356899999998764 456777777666654322 1 1233333332 23
Q ss_pred CCCceEEEEeCCCCCC--------CH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 76 GSDIDLILAEVDLPMT--------KG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 76 ~~~PDLIILDi~MP~m--------DG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
.||+|++.+..-+. .. -++++.|++.. +..+||+++-
T Consensus 83 --~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~--p~~~ii~~~~ 128 (215)
T 2vpt_A 83 --NPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVK--PNVTLFVADY 128 (215)
T ss_dssp --CCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHC--TTCEEEEECC
T ss_pred --CCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhC--CCCEEEEEeC
Confidence 79999987743211 11 24566777653 5677777764
No 243
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=45.78 E-value=2.5e+02 Score=28.47 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=61.9
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 30 RSKVRILLCDNDS---NSSDAVFSLLVKCSYQVTS-V-R-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 30 m~~irVLIVDDd~---~~r~~L~~lL~~~gyeV~~-A-s-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
|+++||.||.--. .-+..+..+....+++++. + . +.+.+.+.....+....-+. .|--++|+.-...
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~-------~~~~~ll~~~~~~ 82 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCY-------ADYLSMFEQEARR 82 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBC-------SSHHHHHHHHTTC
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceee-------CCHHHHHhccccc
Confidence 6789999999876 4344444443344577663 3 3 55555555444311100111 1333444432111
Q ss_pred cCCCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 104 ~~~~~iPVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
. +.+-+|+++.. .-.+.+..|+++|-.=|+-||+. .++..+.++
T Consensus 83 ~--~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 130 (398)
T 3dty_A 83 A--DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRE 130 (398)
T ss_dssp T--TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHH
T ss_pred C--CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHH
Confidence 1 33556655543 33678999999999999999975 455554443
No 244
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=45.66 E-value=2e+02 Score=28.40 Aligned_cols=99 Identities=11% Similarity=0.102 Sum_probs=57.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++|.||.--..-+..+..+....+++++ .+. +.+.+.+..... .+ -+..| ++.+... ..+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~-~~~~~-----------~~~~l~~---~~~ 66 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN--GA-EAVAS-----------PDEVFAR---DDI 66 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT--TC-EEESS-----------HHHHTTC---SCC
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc--CC-ceeCC-----------HHHHhcC---CCC
Confidence 58999999866555555544444478776 444 444444433332 21 12212 1223221 345
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHH
Q 008655 110 PVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNL 147 (558)
Q Consensus 110 PVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~ 147 (558)
-+|+++... -.+.+..|+++|..=|+.||+. .++....
T Consensus 67 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l 108 (344)
T 3euw_A 67 DGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRAC 108 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHH
T ss_pred CEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHH
Confidence 566665533 3667889999999999999965 4444443
No 245
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=45.59 E-value=62 Score=32.79 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCCceEEEEe--cCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 008655 93 GLKMLKYITRDKELQRIPVIMMS--AQDEVSVVVKCLRLGAADYLVK-----PLRTNELLNLWTHMWR 153 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLS--a~~d~e~a~eAL~~GA~DYL~K-----P~~~eeL~~~L~~llr 153 (558)
.++++++|++. ..+|||++. +-.+.+.+.+++++||+.++.= --++......+...+.
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~ 250 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATT 250 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 47889999875 578999883 4557899999999999999653 3446666665555544
No 246
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=45.34 E-value=84 Score=25.17 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=52.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS-YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g-yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
+.+|+|+.- -.+-..+...|...| ++|..+..-.+.++.+... ...++..|+.- . +.+..+.. ..-
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~~----~-~~~~~~~~-----~~d 71 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKD----E-AGLAKALG-----GFD 71 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTTC----H-HHHHHHTT-----TCS
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCCC----H-HHHHHHHc-----CCC
Confidence 468999998 777777888888888 8887554333444444433 45666666542 2 33333322 234
Q ss_pred EEEEec-C-CCHHHHHHHHHcCCCEE
Q 008655 111 VIMMSA-Q-DEVSVVVKCLRLGAADY 134 (558)
Q Consensus 111 VIVLSa-~-~d~e~a~eAL~~GA~DY 134 (558)
+|+.+. . ........+++.|+.-|
T Consensus 72 ~vi~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 72 AVISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEEECCCchhhHHHHHHHHHhCCCEE
Confidence 454443 2 22445556677776544
No 247
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=45.23 E-value=76 Score=31.04 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
++++++|++. ..+|||...+-.+.+.+.+++.+||+...
T Consensus 230 ~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 4777888764 47899988888889999999999998773
No 248
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=45.14 E-value=1.1e+02 Score=28.70 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc---CCCEEEe
Q 008655 64 SPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL---GAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PD-LIILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~---GA~DYL~ 136 (558)
+..+.++.+... .+| |+++++.-.++ -.++++++|++. ..+|||...+-.+.+.+.+++++ ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 556655555544 467 55566642221 247889999864 47899998888888999999999 9998864
No 249
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=44.93 E-value=54 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=21.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT 60 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~ 60 (558)
-+|||+..+..+...+.++++..||.|.
T Consensus 52 ekiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 52 EKILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 4688888888888777777777787765
No 250
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=44.87 E-value=71 Score=29.75 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhcCCCceEEE-EeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLIL-AEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLII-LDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+... ..|.|+ .++...++ -.++.+++|++. ..+||++..+-...+.+.++++.||+.++.
T Consensus 155 ~~~e~~~~~~~~--G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEEL--GAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 344555555544 467665 45543221 146788888875 478999888888778888999999999864
No 251
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=44.82 E-value=48 Score=34.70 Aligned_cols=96 Identities=13% Similarity=0.273 Sum_probs=57.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.+.|+|||.++.....+ ...|+.|+... +-.+.|+.+... ..|+||+-+.-+ ..-+.++..++... +.++
T Consensus 27 g~~vvvId~d~~~v~~~----~~~g~~vi~GDat~~~~L~~agi~--~A~~viv~~~~~-~~n~~i~~~ar~~~--p~~~ 97 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGAA--KAEVLINAIDDP-QTNLQLTEMVKEHF--PHLQ 97 (413)
T ss_dssp TCCEEEEECCHHHHHHH----HHTTCCCEESCTTCHHHHHHTTTT--TCSEEEECCSSH-HHHHHHHHHHHHHC--TTCE
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEcCCCCHHHHHhcCCC--ccCEEEECCCCh-HHHHHHHHHHHHhC--CCCe
Confidence 46788888887755443 34566554322 223344444322 678888766422 22345566666643 6677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 111 VIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 111 VIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
||+.+. +........++||+..+.--
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~~~ 123 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPERET 123 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEETT
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEECcc
Confidence 776654 34566777899999887643
No 252
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=44.80 E-value=98 Score=29.03 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=56.6
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEE---EEeCCCCC-----CCHHHHHHHHHhhcCCCCceEEEE
Q 008655 45 SDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLI---LAEVDLPM-----TKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 45 r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLI---ILDi~MP~-----mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
.+.+..+-+.. +..|. .+.+.+++...+.. ..|+| ++.+. |+ ...++++++++.. .+||+..
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~----~ipvia~ 192 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA----GIAVIAE 192 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC----CCCEEEE
Confidence 33444333332 55554 66788888777654 47888 33321 21 1246788888762 6899988
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008655 115 SAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+-.+.+.+.+++++||+.++.
T Consensus 193 GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 193 GKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp SCCCSHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
Confidence 8888899999999999998865
No 253
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=44.77 E-value=73 Score=30.71 Aligned_cols=85 Identities=11% Similarity=-0.053 Sum_probs=52.1
Q ss_pred cEEEEE-eCCHH---HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 33 VRILLC-DNDSN---SSDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 33 irVLIV-DDd~~---~r~~L~~lL~~~gyeV~---~A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
-+|.|| +|+.. ..+.+.+.|.+.|.+|. .. .+....+..+... .||+|++.. .+.....+++.++
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~--~~dav~~~~--~~~~a~~~~~~~~ 211 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAA--NPDAILVGA--SGTAAALPQTTLR 211 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHH--CCSEEEEEC--CHHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhc--CCCEEEEec--CcchHHHHHHHHH
Confidence 355444 44443 33456667777787753 22 2455667776655 799999864 2345677788888
Q ss_pred hhcCCCCceEEEEecCCCHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a 123 (558)
+.. ..+|+|.+.+..+.+..
T Consensus 212 ~~g--~~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 212 ERG--YNGLIYQTHGAASMDFI 231 (362)
T ss_dssp HTT--CCSEEEECGGGCSHHHH
T ss_pred HcC--CCccEEeccCcCcHHHH
Confidence 764 56788666666665543
No 254
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=44.72 E-value=36 Score=31.36 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.++.++...+.. ..|+|-+.-. ..-|++.+++++.. .+++||+...+-. .+.+.+++.+||+.+..
T Consensus 112 ~t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~--~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 112 MTPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGP--FPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp CSHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTT--CTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CCHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHh--CCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 367776666543 4777765321 12378888888864 2478988877654 56788999999988854
No 255
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=44.59 E-value=2.5e+02 Score=27.90 Aligned_cols=89 Identities=9% Similarity=0.069 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCC--CCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 44 SSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLP--MTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP--~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
....|..+-.+.|.++. .+.|.+|+-..+.. .+++|=++- ++- ..| ++...+|...- ..++.+|.-|+-.+
T Consensus 141 ~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vd-l~~t~~L~~~i-p~~~~~VsESGI~t 215 (258)
T 4a29_A 141 ELESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEIN-KENQRKLISMI-PSNVVKVAKLGISE 215 (258)
T ss_dssp HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBC-HHHHHHHHTTS-CTTSEEEEEESSCC
T ss_pred HHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccC-HHHHHHHHhhC-CCCCEEEEcCCCCC
Confidence 34455566667898755 88999998877764 478775432 222 233 44455555432 14566677778899
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008655 120 VSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~K 137 (558)
.+.+.+....|++.||.-
T Consensus 216 ~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 216 RNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEC
Confidence 999999999999999874
No 256
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=44.54 E-value=89 Score=30.48 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
.++++++++. ..+||++=.+-.+.+.+.+++..||+.++.=
T Consensus 194 ~~~i~~lr~~---~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEY---HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHT---TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhc---cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788888874 4688777666677899999999999999864
No 257
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=44.47 E-value=32 Score=32.74 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+.+++.+... +||+| --||+.-- ++++++++. ..+|||.=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~--~PD~i---EiLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKV--QPDCI---ELLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHH--CCSEE---EEECTTCH-HHHHHHHHH---HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhc--CCCEE---EECCchhH-HHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 4577777766 79987 33577543 789999875 578988666678899999999999988754
No 258
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=44.44 E-value=1.4e+02 Score=28.99 Aligned_cols=84 Identities=10% Similarity=0.032 Sum_probs=51.1
Q ss_pred EEEEE-eCCHHH---HHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 34 RILLC-DNDSNS---SDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 34 rVLIV-DDd~~~---r~~L~~lL~~~gyeV~---~A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
+|.|| +|+..- .+.+.+.|.+.|.+|. .. .+....+..+... .||+|++... +.+...+++.+++
T Consensus 141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDA--KPDAMFVFVP--AGQGGNFMKQFAE 216 (368)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHH--CCSEEEEECC--TTCHHHHHHHHHH
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhc--CCCEEEEecc--chHHHHHHHHHHH
Confidence 44443 444433 3556677777887654 12 2566777777665 7999998543 3478889999987
Q ss_pred hcCCCC-ceEEEEecCCCHH
Q 008655 103 DKELQR-IPVIMMSAQDEVS 121 (558)
Q Consensus 103 ~~~~~~-iPVIVLSa~~d~e 121 (558)
...... +||+......+..
T Consensus 217 ~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 217 RGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp TTGGGTTCEEEEETTTTCHH
T ss_pred cCCCcCCceEEecCcccCHH
Confidence 542222 6666544333333
No 259
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=44.43 E-value=1.9e+02 Score=30.48 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHHHHHHHHHhhcCCCCc
Q 008655 44 SSDAVFSLLVKC-SYQV--TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 44 ~r~~L~~lL~~~-gyeV--~~Asdg~EALe~L~~~~~~PDLIILDi~MP-----------~mDGlElL~~Ir~~~~~~~i 109 (558)
..+.+..+-+.. ++.| ....+.++|..+.+. ..|.|.+...-- +...++++..+........+
T Consensus 265 ~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 265 VIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 444454444444 3443 356778888666543 488888744210 12345555555543212478
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
|||.-.+-.+...+.+++.+||+....
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 999888888999999999999988753
No 260
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=44.39 E-value=1.3e+02 Score=28.04 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=54.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~ 105 (558)
|.++.-+|||..-..-+-..+...|.+.|+.|+ ...+...+.+...+. ...+.++.+++-+.+.+ ++++++.+..
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~- 81 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKF- 81 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhc-
Confidence 445556899999999999999999999999887 555665555544443 23444444444454443 3556665543
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+-+|+..+
T Consensus 82 -g~id~li~~A 91 (261)
T 3n74_A 82 -GKVDILVNNA 91 (261)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 4566666654
No 261
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=44.04 E-value=64 Score=31.97 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=54.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
|+++||-||.--..-...+...|...+++++ .+. +.+.+-+..... +.+ +..+. ++.+-.. +
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~---~~~-------~~~~~---~~~ll~~---~ 65 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLF---PSV-------PFAAS---AEQLITD---A 65 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHS---TTC-------CBCSC---HHHHHTC---T
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhc---CCC-------cccCC---HHHHhhC---C
Confidence 5678999998643322223334445678865 444 333333333222 110 11111 1223222 3
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L 148 (558)
.+-+|+++... -.+.+..|+++|..=|+-||+. .++....+
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~ 110 (336)
T 2p2s_A 66 SIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQ 110 (336)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHH
T ss_pred CCCEEEEeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHH
Confidence 45666666543 3678889999999999999975 44444433
No 262
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=43.88 E-value=65 Score=34.61 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.+..++. . .+|+|.+|...+... -++++++|++.. +.+||++ ..-...+.+..+.++||+.++.
T Consensus 233 ~~~a~~l~~-a--G~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE-A--GVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH-T--TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-c--cCceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444444 3 599999999877543 468899998763 5788876 3345667888999999998875
No 263
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=43.77 E-value=1.5e+02 Score=29.17 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=58.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC---CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC---SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~---gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
++||.||.--..-+..+. .|... +++++ .+. +.+.+.+..... ...-+..| - +.+-..
T Consensus 2 ~~rigiiG~G~ig~~~~~-~l~~~~~~~~~l~av~d~~~~~a~~~a~~~--~~~~~~~~-------~----~~ll~~--- 64 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTA-VLQTLPRSEHQVVAVAARDLSRAKEFAQKH--DIPKAYGS-------Y----EELAKD--- 64 (334)
T ss_dssp CEEEEEECCSHHHHHHHH-HHTTSCTTTEEEEEEECSSHHHHHHHHHHH--TCSCEESS-------H----HHHHHC---
T ss_pred ccEEEEECchHHHHHHHH-HHHhCCCCCeEEEEEEcCCHHHHHHHHHHc--CCCcccCC-------H----HHHhcC---
Confidence 579999997766655444 44433 25655 344 555555554443 11112222 1 223322
Q ss_pred CCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 107 QRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 107 ~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
+.+-+|+++... -.+.+.+|+++|-.=|+-||+. .++..+.++.
T Consensus 65 ~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~ 112 (334)
T 3ohs_X 65 PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTE 112 (334)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHH
Confidence 345666665433 3678889999999999999974 5555554443
No 264
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=42.96 E-value=95 Score=29.12 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCEEEEECC--H----HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVRS--P----RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~Asd--g----~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+.+.||.+..+.. . .+.++.+... .+|-||+--.- .+ -+.++.+.. ..+|||++..
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiIi~~~~--~~-~~~~~~l~~----~~iPvV~~~~ 100 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGR--QIGGIILLYSR--EN-DRIIQYLHE----QNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTT--CCCEEEESCCB--TT-CHHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEEeCCC--CC-hHHHHHHHH----CCCCEEEECC
Confidence 34455667778998875442 2 2344555544 78988873211 11 256777765 5689998864
No 265
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=42.42 E-value=3e+02 Score=28.23 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=60.7
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 30 RSKVRILLCDNDS---NSSDAVFSLLVKCSYQVTS-V-R-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 30 m~~irVLIVDDd~---~~r~~L~~lL~~~gyeV~~-A-s-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
|+++||.||.--. .-...+..+....+++++. + . +.+.+.+..+..+...+-+. .|--++++.-...
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~-------~~~~~ll~~~~~~ 107 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVY-------SDFKEMAIREAKL 107 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBC-------SCHHHHHHHHHHC
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCccccc-------CCHHHHHhccccc
Confidence 6789999999876 3333344433333577653 3 3 45555554443311100111 1333444432211
Q ss_pred cCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
. +.+-+|++.... -.+.+..|+++|-.=|+-||+. .++..+.++
T Consensus 108 ~--~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 155 (417)
T 3v5n_A 108 K--NGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKK 155 (417)
T ss_dssp T--TCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHH
T ss_pred C--CCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHH
Confidence 1 335566565433 3778999999999999999975 455544443
No 266
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=42.37 E-value=76 Score=32.92 Aligned_cols=66 Identities=17% Similarity=0.019 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.++.+.+. .+|+|.+|....... -++.+++|++.. +.+|||+ -.-.+.+.+..+.++||+....
T Consensus 102 ~e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 3445555444 689999997654322 257888898753 5678776 1234567889999999988875
No 267
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=42.37 E-value=1.6e+02 Score=25.48 Aligned_cols=70 Identities=7% Similarity=0.089 Sum_probs=47.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
..+|..||-++...+..+..+...+. .+ ....|..+.+..+......+|+|++|.-.-..+..++++.+.
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~ 139 (187)
T 2fhp_A 67 MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML 139 (187)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHH
Confidence 36899999999999988888876653 23 356677776654432123799999985422345566667663
No 268
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=42.02 E-value=91 Score=28.97 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 63 RSPRQVIDALNAEGSDID-LILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PD-LIILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+..+.++.+.+. ..| |.+.|...... ..++++++|++. ..+||++-..-.+.+.+.+++++||+.++.
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4666666666655 467 44555443211 246778888764 468999888788888889999999887764
No 269
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.68 E-value=1e+02 Score=29.01 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=34.7
Q ss_pred cEEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 33 VRILLCD------NDSNSSDAVFSLLVKCSYQVTSV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 33 irVLIVD------Dd~~~r~~L~~lL~~~gyeV~~A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
.+|++|+ |.......+.+.|+..|+++... .+.++..+.+.. .|.|++ ||.+-..+++.|++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~~ 99 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELKR 99 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHHH
Confidence 4666665 22234455666666667666555 355555555543 355554 55555566665554
No 270
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=41.20 E-value=1.6e+02 Score=26.92 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=53.6
Q ss_pred HHHhCCCE-EEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH
Q 008655 51 LLVKCSYQ-VTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR 128 (558)
Q Consensus 51 lL~~~gye-V~~Asdg~EALe~L~~~-~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~ 128 (558)
.|...+.- ++...+.+++.++++.. ....++|-+.+..| ++.+.++.+++... .+. +|-+..-.+.+.+.++.+
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~-~~~-~ig~~~v~~~~~~~~a~~ 81 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKE-KGA-IIGAGTVTSVEQCRKAVE 81 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHH-TTC-EEEEESCCSHHHHHHHHH
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCC-CCc-EEEecccCCHHHHHHHHH
Confidence 34444533 33455677666655431 12578887766654 56778888887521 122 344434456778899999
Q ss_pred cCCCEEEeCCCCHHHHHH
Q 008655 129 LGAADYLVKPLRTNELLN 146 (558)
Q Consensus 129 ~GA~DYL~KP~~~eeL~~ 146 (558)
.||+-+ .-|.-..++.+
T Consensus 82 ~Gad~i-v~~~~~~~~~~ 98 (205)
T 1wa3_A 82 SGAEFI-VSPHLDEEISQ 98 (205)
T ss_dssp HTCSEE-ECSSCCHHHHH
T ss_pred cCCCEE-EcCCCCHHHHH
Confidence 999766 55654444433
No 271
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=41.06 E-value=2.7e+02 Score=27.67 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=55.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
++++|.||.--..-+..+..+....+++++ .+. +.+.+.+.....+..+.+.+.+ + ++.+-.. +.
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~----~~~ll~~---~~ 71 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S----YESLLED---PE 71 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S----HHHHHHC---TT
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C----HHHHhcC---CC
Confidence 468999998866655555544444467765 444 4444444444331111111211 2 1222222 34
Q ss_pred ceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCH
Q 008655 109 IPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLRT 141 (558)
Q Consensus 109 iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~~ 141 (558)
+-+|++.... -.+.+..|+++|..=++-||+..
T Consensus 72 ~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~ 106 (362)
T 1ydw_A 72 IDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAM 106 (362)
T ss_dssp CCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSS
T ss_pred CCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcC
Confidence 5566665543 36788899999999999999753
No 272
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=40.97 E-value=91 Score=29.45 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCC-CC--HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 65 PRQVIDALNAEGSDID-LILAEVDLPM-TK--GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 65 g~EALe~L~~~~~~PD-LIILDi~MP~-mD--GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..+.++.+... .++ ++++++.-.+ .. .++++++|++. ..+|||...+-.+.+.+.++++.||+.++.
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 45555555544 466 4456654222 12 38899999864 478999988888888899999999999865
No 273
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=40.71 E-value=91 Score=32.12 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=64.1
Q ss_pred HHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 45 SDAVFSLLVKCSY--QVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 45 r~~L~~lL~~~gy--eV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
...|..++.+.|. .|.... +..+..+++.......|++++-.. .+.-|+.+++.+. ..+|||... ..
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~~~~lEAma-----~G~PvI~s~-~~-- 391 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFGLAPVEAMA-----SGLPAVVTR-NG-- 391 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCCSHHHHHHH-----TTCCEEEES-SB--
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCCcHHHHHHH-----cCCCEEEec-CC--
Confidence 6677777777664 244333 456777776531001188887433 2334567777765 567888643 22
Q ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 121 SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
...+.+..|..+++..|.+.++|...|..++.
T Consensus 392 -g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 392 -GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp -HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred -CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 34566777888999999999999999988764
No 274
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=40.39 E-value=80 Score=30.01 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcCCCceEE-EEeCCCC---CCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLI-LAEVDLP---MTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLI-ILDi~MP---~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+..+.+.+. ..|.| +.|+.-. ...-++++++|++. ..+|||+--+-.+.+.+.++++.||+..+.
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 455666666554 45644 4576422 12237888998875 578999988888889999999999877754
No 275
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.09 E-value=42 Score=31.44 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=47.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDLPMT--------KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA 132 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--------DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~ 132 (558)
.+.+..++.... . ..|.|+++--.|.. -|++.++++.... ...+|||.+-+-. .+.+.++++.||.
T Consensus 94 s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 678888876653 3 58999987655422 3678888887520 0368999887755 5677889999998
Q ss_pred EE
Q 008655 133 DY 134 (558)
Q Consensus 133 DY 134 (558)
.+
T Consensus 168 gV 169 (210)
T 3ceu_A 168 GA 169 (210)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 276
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=40.05 E-value=91 Score=29.76 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVRSP------RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~Asdg------~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.||.+..+... .+.++.+... .+|-||+--.... -+.++.+.. ..+|||++..
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~---~~~~~~l~~----~~iPvV~i~~ 114 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSK--SVDGFILLYSLKD---DPIEHLLNE----FKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTT--CCSEEEESSCBTT---CHHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCCcCC---cHHHHHHHH----cCCCEEEECC
Confidence 34555566679988755422 2345555544 7898877422111 256777765 5689998864
No 277
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=39.81 E-value=2.2e+02 Score=28.75 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLV-KCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~-~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
++||.||.--..+...+...|. ..++++. .+. +.+.+.+..... ... ++. |--+++ .. +.
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~-~~~-------~~~ell----~~---~~ 64 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY--GIP-VFA-------TLAEMM----QH---VQ 64 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH--TCC-EES-------SHHHHH----HH---SC
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc--CCC-eEC-------CHHHHH----cC---CC
Confidence 5789999887344443344444 4467766 444 444444443332 111 121 222333 22 34
Q ss_pred ceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 109 IPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 109 iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+-+|+++... -.+.+..|+++|..=|+-||+. .++....++
T Consensus 65 vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~ 109 (387)
T 3moi_A 65 MDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIE 109 (387)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHH
Confidence 5566665543 3668889999999999999975 455444433
No 278
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=39.53 E-value=1.8e+02 Score=30.08 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCC----C-CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 47 AVFSLLVKCSYQ--VTSVRSPRQVIDALNAEGSDIDLILAEVD----L-PMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 47 ~L~~lL~~~gye--V~~Asdg~EALe~L~~~~~~PDLIILDi~----M-P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
.+..+-+..+.- |-.+.+.++|...... ..|.|++.-+ + .+...+++|.+|.+.- ...+|||.-.+-.+
T Consensus 208 ~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-~~~ipVia~GGI~~ 283 (352)
T 3sgz_A 208 DLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAV-KGKIEVYMDGGVRT 283 (352)
T ss_dssp HHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH-TTSSEEEEESSCCS
T ss_pred HHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHh-CCCCeEEEECCCCC
Confidence 344444443433 3356788888877654 5898887432 1 1234678888887642 23689999999999
Q ss_pred HHHHHHHHHcCCCEEEe-CCC
Q 008655 120 VSVVVKCLRLGAADYLV-KPL 139 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~-KP~ 139 (558)
...+.++|.+||+.... .|+
T Consensus 284 g~Dv~kaLalGA~aV~iGr~~ 304 (352)
T 3sgz_A 284 GTDVLKALALGARCIFLGRPI 304 (352)
T ss_dssp HHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEECHHH
Confidence 99999999999999854 343
No 279
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=39.39 E-value=44 Score=32.58 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCC--C--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 008655 79 IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQD--E--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTHM 151 (558)
Q Consensus 79 PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~--d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~l 151 (558)
.|++++-- + |..+++.+. ..+|||+..... + ...+....+.|. +++..|-+ .++|...+..+
T Consensus 255 ad~~v~~s---g--~~~~~EAma-----~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS---G--ALTVSEIAA-----AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC---C--HHHHHHHHH-----HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC---c--hHHHHHHHH-----hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 46666542 2 777777776 467988764321 2 112345667787 99998865 88898888766
No 280
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=39.25 E-value=2.7e+02 Score=28.22 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=60.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--------CCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVK--------CSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~--------~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
++||-||.--..-+..+..+... .+.+|+ .+. +.+.|-+..+.. ...-+..|+ +.+-
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~--~~~~~y~d~-----------~~ll 92 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL--GAEKAYGDW-----------RELV 92 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH--TCSEEESSH-----------HHHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc--CCCeEECCH-----------HHHh
Confidence 69999999765554444333321 135665 444 455454444443 222233332 2333
Q ss_pred hhcCCCCceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 102 RDKELQRIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
.. +.+-+|+++.... .+.+..||++|-.=|+-||+. .++....++.
T Consensus 93 ~~---~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~ 142 (412)
T 4gqa_A 93 ND---PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQA 142 (412)
T ss_dssp HC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHH
T ss_pred cC---CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHH
Confidence 32 4556666665443 678999999999999999975 4555554443
No 281
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=39.25 E-value=93 Score=29.39 Aligned_cols=77 Identities=13% Similarity=0.273 Sum_probs=53.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc-----C-CC
Q 008655 64 SPRQVIDALNAEGSDID-LILAEVD----LPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL-----G-AA 132 (558)
Q Consensus 64 dg~EALe~L~~~~~~PD-LIILDi~----MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~-----G-A~ 132 (558)
+..+....+.+. .++ |++.++. +.+. .++++++|++. ..+|||...+-.+.+.+.++++. | |+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 556655555544 467 5555653 2333 38899999875 47899999888888999999998 9 98
Q ss_pred EEEe------CCCCHHHHHH
Q 008655 133 DYLV------KPLRTNELLN 146 (558)
Q Consensus 133 DYL~------KP~~~eeL~~ 146 (558)
.++. .+++..+++.
T Consensus 219 gv~vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKR 238 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHH
Confidence 8754 3566655544
No 282
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=39.14 E-value=2.9e+02 Score=27.22 Aligned_cols=107 Identities=21% Similarity=0.151 Sum_probs=63.8
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 008655 32 KVRILLCDNDS----NSSDAVFSLLVKCSY--QVTSVR-----SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (558)
Q Consensus 32 ~irVLIVDDd~----~~r~~L~~lL~~~gy--eV~~As-----dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~I 100 (558)
.++++|+.+.+ .....+..+....+. .|.... +.++..+++.. .|++++--.. +.-|+.+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 46777777763 334445555444332 233322 23455555553 4777664332 33466677766
Q ss_pred HhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
. ..+|||.... ....+.+..|...++.. +.++|...|..++..
T Consensus 337 a-----~G~PvI~~~~----~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 337 W-----KGKPVIGRAV----GGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp H-----TTCCEEEESC----HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred H-----cCCCEEEccC----CCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 5 5678876332 23556677788899886 889999998888753
No 283
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=38.98 E-value=1.5e+02 Score=27.92 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHhcCCCceEE-EEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 63 RSPRQVIDALNAEGSDIDLI-LAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLI-ILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+..+..+.+... ..|.| +.|..-... ..++++++|++. ..+||++-..-.+.+.+.++++.||+..+.
T Consensus 30 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 30 GDPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp TCHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3555555555544 45544 444432211 235667777753 578999988888888999999999988865
No 284
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=38.79 E-value=79 Score=31.36 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=58.5
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH---HHHHhhcCCC
Q 008655 32 KVRILLCDN-DSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML---KYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDD-d~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL---~~Ir~~~~~~ 107 (558)
++||.||.- -..-...+. .|...+.+++.+.+.......+.+. .+.+-+.+ +--+++ +.+.... +
T Consensus 3 mirvgiIG~gG~i~~~h~~-~l~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~------~~~~ll~~~~~l~~~~--~ 71 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLK-AIKEVGGVLVASLDPATNVGLVDSF--FPEAEFFT------EPEAFEAYLEDLRDRG--E 71 (312)
T ss_dssp CCEEEEECTTSSSHHHHHH-HHHHTTCEEEEEECSSCCCGGGGGT--CTTCEEES------CHHHHHHHHHHHHHTT--C
T ss_pred ceEEEEECCChHHHHHHHH-HHHhCCCEEEEEEcCCHHHHHHHhh--CCCCceeC------CHHHHHHHhhhhcccC--C
Confidence 589999997 334444444 4444577766433322221222221 12222211 112333 3333211 5
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
.+-+|+++... -.+.+.+|+++|..=|+-||+. .++..+.++.
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 118 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKEL 118 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHH
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHH
Confidence 66667666543 3678999999999999999975 4555554443
No 285
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=38.72 E-value=1.4e+02 Score=30.61 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL----P-MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M----P-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
..+..+-+..+..|+ .+.+.+++..++.. ..|.|++.-+- . +..-++++.++++.- ...+|||.-.+-.
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~~~ipvia~GGI~ 290 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAA-QGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-TTSSCEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHh-CCCCEEEEECCCC
Confidence 445555555454443 45678888776654 48988884321 1 124577888887642 1369999999999
Q ss_pred CHHHHHHHHHcCCCEEEe-CCC
Q 008655 119 EVSVVVKCLRLGAADYLV-KPL 139 (558)
Q Consensus 119 d~e~a~eAL~~GA~DYL~-KP~ 139 (558)
+...+.+++.+||+.+.. .|+
T Consensus 291 ~~~D~~k~l~~GAdaV~iGr~~ 312 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFIGRPV 312 (370)
T ss_dssp SHHHHHHHHHHTCSEEEECHHH
T ss_pred CHHHHHHHHHcCCCEEeecHHH
Confidence 999999999999998854 444
No 286
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=38.63 E-value=2.2e+02 Score=29.34 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEeCCCC---------------------CCCHHHHHHH
Q 008655 46 DAVFSLLVKCSYQVT--SV---RSPRQVIDALNAEGSDIDLILAEVDLP---------------------MTKGLKMLKY 99 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~A---sdg~EALe~L~~~~~~PDLIILDi~MP---------------------~mDGlElL~~ 99 (558)
+.|..+-+..+.-|+ .+ .+.++|..+... .+|.|+++-. . +....++|..
T Consensus 196 ~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~ 271 (365)
T 3sr7_A 196 KHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN 271 (365)
T ss_dssp HHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHHHH
Confidence 445555444454443 33 577777777654 4898887533 1 2234466666
Q ss_pred HHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-CCC
Q 008655 100 ITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-KPL 139 (558)
Q Consensus 100 Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-KP~ 139 (558)
++... ..+|||.-.+-.+...+.++|.+||+.+.. .|+
T Consensus 272 v~~~~--~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~ 310 (365)
T 3sr7_A 272 AQPLM--DKVEILASGGIRHPLDIIKALVLGAKAVGLSRTM 310 (365)
T ss_dssp HGGGT--TTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred HHHhc--CCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 65432 478998888888999999999999999844 443
No 287
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=38.57 E-value=95 Score=33.25 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+.+. .+|+|.+|...+.. .-++++++|++.. +.+||++ ..-.+.+.+..+.++||+.+..
T Consensus 229 ~~~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~v~~i~~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAA--GVDVVVVDTAHGHSKGVIERVRWVKQTF--PDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCCSBHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhc--ccceEEecccCCcchhHHHHHHHHHHHC--CCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 334444555444 69999999887653 3458889998753 5778876 3345677889999999988875
No 288
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=38.42 E-value=1.3e+02 Score=28.26 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asd------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+.+.+.+.||.+..+.. ..+.++.+... .+|-||+--.... + +.++.+.. ..+|||++..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~ 95 (287)
T 3bbl_A 26 FLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLLK----QKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHHh----cCCCEEEECC
Confidence 445566677778998875432 24566766654 7998887432222 2 56666664 4689988864
No 289
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=38.28 E-value=1e+02 Score=29.35 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCEEEEEC-----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR-----SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As-----dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+.+.||.+..+. ...+.++.+... .+|-||+--..... +.++.+.. ..+|||++..
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiIi~~~~~~~---~~~~~l~~----~~iPvV~~~~ 96 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETR--RVDALIVAHTQPED---FRLQYLQK----QNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHT--CCSEEEECSCCSSC---HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcC--CCCEEEEeCCCCCh---HHHHHHHh----CCCCEEEECC
Confidence 3445556667899876433 234566777655 78988875332222 66777765 4689998864
No 290
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=38.23 E-value=80 Score=29.69 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhcCCCceE-EEEeCCCCCC---CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHc---CCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDL-ILAEVDLPMT---KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRL---GAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDL-IILDi~MP~m---DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~---GA~DYL~ 136 (558)
+..+.++.+... .++. ++++..-.++ -.++++++|++. ..+|||...+-.+.+.+.++++. ||+.++.
T Consensus 150 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 150 DLWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EHHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 345655555554 4674 4567654322 257888888863 57899998888888899999998 9988854
No 291
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=38.21 E-value=2.1e+02 Score=28.73 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=57.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
++++||.||.--..-+......|... +++|. .+. +.+.+. ... +.+-+.+ | ++.+...
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~---~~~~~~~------~----~~~ll~~--- 65 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK---RDL---PDVTVIA------S----PEAAVQH--- 65 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---HHC---TTSEEES------C----HHHHHTC---
T ss_pred CCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---hhC---CCCcEEC------C----HHHHhcC---
Confidence 45799999998766555455555554 68876 443 443322 111 2221211 1 1223322
Q ss_pred CCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 107 QRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 107 ~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
+.+-+|+++... -.+.+..|+++|..=|+-||+. .++....++
T Consensus 66 ~~~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 112 (364)
T 3e82_A 66 PDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIA 112 (364)
T ss_dssp TTCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHH
Confidence 345566665433 3678899999999999999975 455444333
No 292
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=38.20 E-value=45 Score=30.94 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=44.6
Q ss_pred HHHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHHhhcC--CCCceEEEEecC
Q 008655 50 SLLVKCSYQVT-SV--RSPRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKE--LQRIPVIMMSAQ 117 (558)
Q Consensus 50 ~lL~~~gyeV~-~A--sdg~EALe~L~~~~~~PDLIILDi~MP~mDG-------lElL~~Ir~~~~--~~~iPVIVLSa~ 117 (558)
+.+...|..+. .+ .+..++++.+. ...|.|+++-..|+.+| ++.++++++... ..++||++.-+-
T Consensus 103 ~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T 2fli_A 103 QKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV 179 (220)
T ss_dssp HHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred HHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcC
Confidence 34444455554 23 23334443332 24688887766565444 244555554310 125677665544
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008655 118 DEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 118 ~d~e~a~eAL~~GA~DYL~ 136 (558)
. .+.+.+++++||+.++.
T Consensus 180 ~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 180 D-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp C-TTTHHHHHHHTCCEEEE
T ss_pred C-HHHHHHHHHcCCCEEEE
Confidence 4 55666788889988854
No 293
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=38.19 E-value=2.1e+02 Score=27.84 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
+...+.+.+.+.||.+..+. +.. +.++.+... .+|-||+--. ..+ .+.++.+.. ..+|||++
T Consensus 86 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdGiIi~~~--~~~-~~~~~~l~~----~~iPvV~i 153 (344)
T 3kjx_A 86 VLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSW--RPSGVIIAGL--EHS-EAARAMLDA----AGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTT--CCSEEEEECS--CCC-HHHHHHHHH----CSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEECC--CCC-HHHHHHHHh----CCCCEEEE
Confidence 34556666677799887543 233 344545444 7888777421 122 256677765 56899988
No 294
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=37.93 E-value=61 Score=29.82 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceEEEEec-CCCHHH-HHHHHHcCCCEEEeCCC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSA-QDEVSV-VVKCLRLGAADYLVKPL 139 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPVIVLSa-~~d~e~-a~eAL~~GA~DYL~KP~ 139 (558)
+.+++++.+.......|+|- +.+|- ..|+++++.|++.. +++||.+-.- ....+. +..+.++||+.++..-.
T Consensus 11 ~~~~~~~~~~~~~~~~diie--~G~p~~~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIE--VGTPFLIREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEE--ECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhcCccEEE--eCcHHHHhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 56666666654322355443 33343 35788999998753 4678753221 123344 88999999998888554
Q ss_pred CH
Q 008655 140 RT 141 (558)
Q Consensus 140 ~~ 141 (558)
..
T Consensus 87 ~~ 88 (211)
T 3f4w_A 87 TD 88 (211)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 295
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=37.92 E-value=1.8e+02 Score=29.90 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCC----CC-CCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD----LP-MTKGLKMLKYITRDKELQRIPVIMMSAQD 118 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~----MP-~mDGlElL~~Ir~~~~~~~iPVIVLSa~~ 118 (558)
+.+..+-+..+.-|+ ...+.++|..+... ..|.|++.-+ +. +..-++++.++++.- ...+|||.-.+-.
T Consensus 219 ~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GGI~ 294 (368)
T 2nli_A 219 RDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSGVR 294 (368)
T ss_dssp HHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSSCC
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECCCC
Confidence 344444444443333 45788888777654 4898887431 11 234678888887642 1368999988999
Q ss_pred CHHHHHHHHHcCCCEEEe-CCC
Q 008655 119 EVSVVVKCLRLGAADYLV-KPL 139 (558)
Q Consensus 119 d~e~a~eAL~~GA~DYL~-KP~ 139 (558)
+...+.++|.+||+.+.. .|+
T Consensus 295 ~g~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 295 RGEHVAKALASGADVVALGRPV 316 (368)
T ss_dssp SHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHcCCCEEEECHHH
Confidence 999999999999998854 454
No 296
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=37.58 E-value=2.2e+02 Score=27.57 Aligned_cols=85 Identities=11% Similarity=0.015 Sum_probs=52.1
Q ss_pred CcEEEEE-e-CCHHH---HHHHHHHHHhCCCEEEE--E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 008655 32 KVRILLC-D-NDSNS---SDAVFSLLVKCSYQVTS--V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYI 100 (558)
Q Consensus 32 ~irVLIV-D-Dd~~~---r~~L~~lL~~~gyeV~~--A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~I 100 (558)
.-+|.|| + ++... ...+.+.|.+.|.+|.. . .+....+..+... .||+|++... +.+...+++.+
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~ 224 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF--NPDAIYITGY--YPEIALISRQA 224 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT--CCSEEEECSC--HHHHHHHHHHH
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc--CCCEEEEccc--hhHHHHHHHHH
Confidence 3477777 3 44332 34566677778887652 1 3556677777665 7999998432 34566778888
Q ss_pred HhhcCCCCceEEEEecCCCHHH
Q 008655 101 TRDKELQRIPVIMMSAQDEVSV 122 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~~d~e~ 122 (558)
++.. ..+||+..........
T Consensus 225 ~~~g--~~~~~~~~~~~~~~~~ 244 (366)
T 3td9_A 225 RQLG--FTGYILAGDGADAPEL 244 (366)
T ss_dssp HHTT--CCSEEEECGGGCSTHH
T ss_pred HHcC--CCceEEeeCCcCCHHH
Confidence 7754 4577765544444443
No 297
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=37.56 E-value=2.3e+02 Score=28.96 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
..+|+|++-...+... .++.| ..++..+ +.++|...+..++..
T Consensus 319 ~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp TTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred hCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 6789998733333222 35678 5677665 889999999888754
No 298
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=37.47 E-value=1.4e+02 Score=26.46 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=46.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy-eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--DGlElL~~Ir~ 102 (558)
..+|.-||-++......+..+...+. .+. ...|..+.+..+.. ..+|+|++|.-.... +-.++++.+.+
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~ 139 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGT 139 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHh
Confidence 45899999999999998888877664 343 56677766544322 379999998543332 23456666665
No 299
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=37.21 E-value=47 Score=37.21 Aligned_cols=95 Identities=8% Similarity=0.061 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 46 DAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPM-TK-GLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~-mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
+.+..+|+..||+|+.. .+ ++.++.+.+. .+|||.+...+.. +. .-++++.|++.. +..|+|.+....
T Consensus 528 ~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e~--~adiv~lSsl~~~~~~~~~~v~~~Lk~aG----~~~V~vgG~P~~ 600 (637)
T 1req_B 528 GFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKKS--GAQVADLCSSAKVYAQQGLEVAKALKAAG----AKALYLSGAFKE 600 (637)
T ss_dssp HHHHHHHHHTTCBCCEEECCCH-HHHHHHHHHH--TCSEEEEECCHHHHHHHHHHHHHHHHHTT----CSEEEEESCGGG
T ss_pred HHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHhc--CCCEEEEecccHHHHHHHHHHHHHHHhCC----CCeEEEeCCCCc
Confidence 34556778889998743 35 8888887776 7999998865542 22 245777777653 234566664221
Q ss_pred --HHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008655 121 --SVVVKCLRLGAADYLVKPLRTNELLNLW 148 (558)
Q Consensus 121 --e~a~eAL~~GA~DYL~KP~~~eeL~~~L 148 (558)
+...+..+ |+++|+.--.+..+++..+
T Consensus 601 d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l 629 (637)
T 1req_B 601 FGDDAAEAEK-LIDGRLFMGMDVVDTLSST 629 (637)
T ss_dssp GGGGHHHHHH-HCCCEECTTCCHHHHHHHH
T ss_pred cchhhHHHHh-ccceEecCCcCHHHHHHHH
Confidence 11223445 9999998777776655443
No 300
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=37.04 E-value=55 Score=31.31 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CC-CCHHHHHHHHHhhcCCCCceEE--EEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEV---DL-PM-TKGLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi---~M-P~-mDGlElL~~Ir~~~~~~~iPVI--VLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+.+. ..|+|=+|+ .. |. ..|.++++.|++. ...|+. +++. +....+..++++||+.+..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~---~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPL---TKKTLDVHLMIV-EPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG---CCSEEEEEEESS-SGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhh---cCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEE
Confidence 455666666544 456665555 21 22 2477999999874 345665 6663 3344678899999999977
Q ss_pred CCC--CHHHHHHHHHH
Q 008655 137 KPL--RTNELLNLWTH 150 (558)
Q Consensus 137 KP~--~~eeL~~~L~~ 150 (558)
... ..+.+...++.
T Consensus 92 h~e~~~~~~~~~~~~~ 107 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQ 107 (230)
T ss_dssp ECSTTTCTTHHHHHHH
T ss_pred CcccccchhHHHHHHH
Confidence 665 44444444433
No 301
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=36.88 E-value=2e+02 Score=27.56 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=53.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~ 105 (558)
|+++.-.|||..-..-+-..+...|.+.|+.|+ ...+...+.+...+. ...+.++.+++-+.+.+ ++++.+.+..
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 99 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKW- 99 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHc-
Confidence 445566899999999999999999999999987 445655544444443 23444444445454443 3455665432
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+-+||..+
T Consensus 100 -g~iD~lv~nA 109 (277)
T 4dqx_A 100 -GRVDVLVNNA 109 (277)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 4556666654
No 302
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=36.83 E-value=39 Score=31.85 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHHhhcCCCCceEEEEec-CCC-HHHHHHHHHcCCCEEEeCCC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPM--TKGLKMLKYITRDKELQRIPVIMMSA-QDE-VSVVVKCLRLGAADYLVKPL 139 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~--mDGlElL~~Ir~~~~~~~iPVIVLSa-~~d-~e~a~eAL~~GA~DYL~KP~ 139 (558)
+.++++++++.. ...+-++++.+|- ..|+++++.|++.. ++.||++-.- .+. ...+..+.++||+-+.....
T Consensus 17 ~~~~~~~~~~~~--~~~vd~ie~g~~~~~~~G~~~i~~lr~~~--~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~ 92 (218)
T 3jr2_A 17 NLTDAVAVASNV--ASYVDVIEVGTILAFAEGMKAVSTLRHNH--PNHILVCDMKTTDGGAILSRMAFEAGADWITVSAA 92 (218)
T ss_dssp SHHHHHHHHHHH--GGGCSEEEECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETT
T ss_pred CHHHHHHHHHHh--cCCceEEEeCcHHHHhcCHHHHHHHHHhC--CCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecC
Confidence 455555555442 1122344555442 24677888888652 3556654321 122 23466778889887777655
Q ss_pred CHHH
Q 008655 140 RTNE 143 (558)
Q Consensus 140 ~~ee 143 (558)
...+
T Consensus 93 ~~~~ 96 (218)
T 3jr2_A 93 AHIA 96 (218)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 5433
No 303
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=36.74 E-value=86 Score=32.97 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.++.+.+. .+|+|++|.....-. -.+++++|++. ..+|||+= .-.+.+.+..++++||+.++.
T Consensus 146 ~e~~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~---~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSK---MNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTT---CCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhc---CCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 4555555555 699999987653222 26788888764 36788752 234577888999999999887
No 304
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=36.61 E-value=82 Score=30.33 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCHH---HHHHHHHcCCCEEEeCCCCHHHHH
Q 008655 93 GLKMLKYITRDKELQRIPVIMMSAQDEVS---VVVKCLRLGAADYLVKPLRTNELL 145 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVIVLSa~~d~e---~a~eAL~~GA~DYL~KP~~~eeL~ 145 (558)
+++++++|++. .++||++++- .+.. ....+.++||+.++.-....+++.
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~ 133 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVPDLPYVAAH 133 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECTTCBTTTHH
T ss_pred HHHHHHHHHhc---CCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEcCCChhhHH
Confidence 46777888764 5789988752 2211 122489999999988655544433
No 305
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=36.61 E-value=2.7e+02 Score=27.55 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
+..+.++.+.+. .+|+|.+....| .+++++++. ..++|+... ...+.+..+.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~----~gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRR----HGVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHH----TTCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHH----cCCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 445777777665 799999988766 578888886 356777543 35667788999999988873
No 306
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=36.53 E-value=2.4e+02 Score=28.16 Aligned_cols=93 Identities=26% Similarity=0.250 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHH----HHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 34 RILLCDNDSNSSD----AVFSLLVKCSY--QV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 34 rVLIVDDd~~~r~----~L~~lL~~~gy--eV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
-+||.||+..+.- .+...-+..+. .| +.+.+.+++.+.+.. ..|+|.+|-.-| +.++++.+.-.
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~-----~~~k~av~~v~- 238 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPL-----EALREAVRRVG- 238 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCH-----HHHHHHHHHHT-
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhC-
Confidence 4788888775432 23333233332 23 377899999998865 489999996422 22333322211
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 107 QRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 107 ~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.++|+++ ++--+.+.+.+..+.|++.+-.
T Consensus 239 ~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 239 GRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp TSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 2567665 5556788888999999876643
No 307
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=35.97 E-value=1.9e+02 Score=29.80 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.++.+.+. .+|+|.+|...... .-++.+++|++.. +.+|||+- .-.+.+.+.++.++||+.+..
T Consensus 110 ~~~~~~liea--Gvd~I~idta~G~~~~~~~~I~~ik~~~--p~v~Vi~G-~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIGG-NVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHhc--CCCceEee-eeCCHHHHHHHHHcCCCEEEE
Confidence 4555555444 69999998643222 2356788888753 57777653 234567888999999988877
No 308
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=35.64 E-value=1.7e+02 Score=28.37 Aligned_cols=39 Identities=8% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CEEEE
Q 008655 23 SGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCS--YQVTS 61 (558)
Q Consensus 23 ~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~g--yeV~~ 61 (558)
..+..|.+.+.+|||..-.-.+-..|...|...| +.|+.
T Consensus 15 ~~n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 15 TENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp ---------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEE
T ss_pred ccccccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEE
Confidence 3345566677899999999999999888887777 66553
No 309
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=35.48 E-value=2e+02 Score=26.09 Aligned_cols=69 Identities=14% Similarity=0.280 Sum_probs=47.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~-~Asdg~EALe~L~~~~--~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
..+|..||-++......++.+...|. .|. ...+..+.+..+.... ..+|+|++|.. ..+-..+++.+.+
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 46899999999999999988887764 343 5577877776654311 27999999864 3333455666654
No 310
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=35.15 E-value=61 Score=31.68 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=53.8
Q ss_pred HHHHHHHH---hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCCC-CCHHHHHHHHHhhcC--CCCceEEEEecC
Q 008655 46 DAVFSLLV---KCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLPM-TKGLKMLKYITRDKE--LQRIPVIMMSAQ 117 (558)
Q Consensus 46 ~~L~~lL~---~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP~-mDGlElL~~Ir~~~~--~~~iPVIVLSa~ 117 (558)
..+.+++. ..|..+. .+++.+|+...+.. .+|+|=+.. .+-. .-.++.+.+|...-+ ..++|+|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 34444444 5588765 77888887766654 367775532 1111 112344444443210 015789988888
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008655 118 DEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 118 ~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.+.+.++++ ||+.++.
T Consensus 218 ~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEE
T ss_pred CCHHHHHHHHc-CCCEEEE
Confidence 88999999999 9999975
No 311
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=35.03 E-value=2.5e+02 Score=27.85 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
+++||.||.--..-+......|... ++++. .+. +.+.+. +. .+.+-+.+ | ++.+-.. +
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~--~~~~~~~~------~----~~~ll~~---~ 66 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH----AD--WPAIPVVS------D----PQMLFND---P 66 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH----TT--CSSCCEES------C----HHHHHHC---S
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH----hh--CCCCceEC------C----HHHHhcC---C
Confidence 4689999998776655344555544 68876 444 333322 21 12211111 2 1233332 4
Q ss_pred CceEEEEecCCC--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 108 RIPVIMMSAQDE--VSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 108 ~iPVIVLSa~~d--~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
.+-+|+++.... .+.+..|+++|..=|+-||+. .++....++
T Consensus 67 ~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~ 112 (352)
T 3kux_A 67 SIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKE 112 (352)
T ss_dssp SCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHH
Confidence 456666665433 678899999999999999964 455544443
No 312
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=35.03 E-value=3.3e+02 Score=26.54 Aligned_cols=99 Identities=10% Similarity=0.101 Sum_probs=54.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++|.||.--..-...+..+....+++++ .+. +.+.+.+..... ....+..| --++ + . ..+
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~--~~~~~~~~-------~~~~---l-~----~~~ 63 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY--QNIQLFDQ-------LEVF---F-K----SSF 63 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS--SSCEEESC-------HHHH---H-T----SSC
T ss_pred CeEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc--CCCeEeCC-------HHHH---h-C----CCC
Confidence 36888888766555444444444467765 444 444443333222 11112222 1122 2 1 344
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHH
Q 008655 110 PVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNL 147 (558)
Q Consensus 110 PVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~ 147 (558)
-+|+++... -.+.+..|++.|..=|+.||+. .++....
T Consensus 64 D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l 105 (325)
T 2ho3_A 64 DLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDL 105 (325)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHH
Confidence 566666543 3578889999999999999974 4444433
No 313
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.84 E-value=1.7e+02 Score=26.51 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=48.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye--V~-~Asdg~EALe~L~~~~--~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
..+|..||-++......+..+...++. |. ...+..+.+..+.... ..+|+|++|... .+-..+++.+.+
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~ 162 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLK 162 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHH
Confidence 468999999999999999988877642 43 5678877776664310 279999988742 234455666654
No 314
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=34.74 E-value=2.5e+02 Score=25.32 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=25.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH-hCCCEEE-EECCHH
Q 008655 34 RILLCDNDSNSSDAVFSLLV-KCSYQVT-SVRSPR 66 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~-~~gyeV~-~Asdg~ 66 (558)
+|||..-.-.+-..+...|. ..|++|. ...+..
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~ 41 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK 41 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 58999888888888888887 7899887 455655
No 315
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=34.74 E-value=1.7e+02 Score=26.83 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-C-C---HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHh
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-R-S---PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITR 102 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~A-s-d---g~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~ 102 (558)
.++..+|||..-...+-..+...|.+.|++|+.. . + .++..+.+... ...+.++..++-+.+.+ ++++.+.+
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD 79 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999999998865 3 2 23333444433 23455555555554444 34555544
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
.. ..+-+|+..+
T Consensus 80 ~~--~~~d~vi~~A 91 (247)
T 2hq1_A 80 AF--GRIDILVNNA 91 (247)
T ss_dssp HH--SCCCEEEECC
T ss_pred hc--CCCCEEEECC
Confidence 32 3455666554
No 316
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=34.32 E-value=99 Score=30.70 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=66.9
Q ss_pred CcEEEEEeCCHH-----HHHHHHHHHHhCCCE---------EEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 008655 32 KVRILLCDNDSN-----SSDAVFSLLVKCSYQ---------VTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLK 95 (558)
Q Consensus 32 ~irVLIVDDd~~-----~r~~L~~lL~~~gye---------V~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlE 95 (558)
.++++||.+.+. +...+.+++...|.. |.... +.++..+++.. .|++++--. -+.-|+.
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 356777765432 335566666655543 32222 35667777654 588877333 2334667
Q ss_pred HHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCC---------------EE--EeCCCCHHHHHHHHHHHHHH
Q 008655 96 MLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAA---------------DY--LVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~---------------DY--L~KP~~~eeL~~~L~~llr~ 154 (558)
+++.+. ..+|||.... ....+.+..|.. ++ +..|.+.++|...| .++..
T Consensus 290 ~lEAma-----~G~PvI~s~~----~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~ 355 (413)
T 3oy2_A 290 SAEGAV-----LGKPLIISAV----GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD 355 (413)
T ss_dssp HHHHHT-----TTCCEEEECC----HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS
T ss_pred HHHHHH-----cCCCEEEcCC----CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC
Confidence 777664 5678886322 234566666766 77 88889999999999 88653
No 317
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=34.24 E-value=2.4e+02 Score=25.93 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=53.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHH---HHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhh
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EA---Le~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~ 103 (558)
+++..+|||..-...+-..+...|.+.|++|+ ...+...+ .+.+... ...+.++.+++.+.+.+ ++++.+.+.
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999999999987 45554333 3333333 34555555555554444 356666653
Q ss_pred cCCCCceEEEEec
Q 008655 104 KELQRIPVIMMSA 116 (558)
Q Consensus 104 ~~~~~iPVIVLSa 116 (558)
+..+-+|+..+
T Consensus 80 --~~~id~li~~A 90 (247)
T 3lyl_A 80 --NLAIDILVNNA 90 (247)
T ss_dssp --TCCCSEEEECC
T ss_pred --cCCCCEEEECC
Confidence 25566776654
No 318
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.01 E-value=1.1e+02 Score=28.80 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
...+.+.+.+.||++..+. +.. +.++.+... .+|.||+--.-+. .-.++++++.. ..+|||++...
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 98 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVHL--KVDAIFITTLDDV-YIGSAIEEAKK----AGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHT--TCSEEEEECSCTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEecCChH-HHHHHHHHHHH----cCCCEEEecCC
Confidence 3445566667899877443 232 455555554 7898887532221 12266777765 47899988653
No 319
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=34.00 E-value=1.8e+02 Score=28.21 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=51.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHH---HHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVI---DALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EAL---e~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~ 105 (558)
..-.|||..-..-+-..+...|.+.|+.|+ ...+...+. +.+... ...+.++-+++-+.+.+ ++++.+.+..
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 106 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAFRLL- 106 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHhC-
Confidence 345799999999999999999999999987 455544333 333333 23454444444454444 3556665542
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+-+||..+
T Consensus 107 -g~id~lvnnA 116 (301)
T 3tjr_A 107 -GGVDVVFSNA 116 (301)
T ss_dssp -SSCSEEEECC
T ss_pred -CCCCEEEECC
Confidence 4566666654
No 320
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=33.82 E-value=1.6e+02 Score=25.03 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCEEEE--------ECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 42 SNSSDAVFSLLVKCSYQVTS--------VRSPRQVIDALNAEGSDID-LILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 42 ~~~r~~L~~lL~~~gyeV~~--------Asdg~EALe~L~~~~~~PD-LIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
+..+..+..++......|.. |.-...|.++|...+..+. +...|+.. +-++.+.|+.....+.+|.|
T Consensus 3 ~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 3 TEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp HHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeE
Confidence 45677888888877665553 3346788888887632322 77788753 24455555543334789999
Q ss_pred EEec
Q 008655 113 MMSA 116 (558)
Q Consensus 113 VLSa 116 (558)
++-+
T Consensus 79 fI~g 82 (121)
T 3gx8_A 79 YVNK 82 (121)
T ss_dssp EETT
T ss_pred EECC
Confidence 9876
No 321
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=33.79 E-value=3.1e+02 Score=26.34 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+...+.+.||.+..+. +.. +.++.+... .+|-||+--. ..+.-.+.+.+.. ..+|||++..
T Consensus 81 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~----~~iPvV~~~~ 151 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPR--FLSVDEIDDIIDA----HSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHT--TCSEEEECCS--SSCHHHHHHHHHH----CSSCEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCChHHHHHHHHc----CCCCEEEEcC
Confidence 44556666777899877544 232 245555554 7898887432 2334445555554 4689998864
No 322
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.69 E-value=2.2e+02 Score=24.23 Aligned_cols=115 Identities=15% Similarity=0.247 Sum_probs=62.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCc--eEEEEeCCCCCCCH-HHHHHHHHhhcCCCCc
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDI--DLILAEVDLPMTKG-LKMLKYITRDKELQRI 109 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~P--DLIILDi~MP~mDG-lElL~~Ir~~~~~~~i 109 (558)
+-|++...+......+..++...||.|.++.++.+.-+.+++.-.++ .+|++=+ .+..- -.+++.++... ..+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvv--ddkewaekairfvkslg--aqv 78 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVV--DDKEWAEKAIRFVKSLG--AQV 78 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEEC--SSHHHHHHHHHHHHHHC--CCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEE--ccHHHHHHHHHHHHhcC--CeE
Confidence 34555566677777899999999999999999999888776632233 3333222 12111 12344444432 333
Q ss_pred eEEEEecCCC---HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDE---VSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d---~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
-||+. .++. .+...+..+.|..--- -.+++.+...++++++.
T Consensus 79 liiiy-dqdqnrleefsrevrrrgfevrt--vtspddfkkslerlire 123 (134)
T 2l69_A 79 LIIIY-DQDQNRLEEFSREVRRRGFEVRT--VTSPDDFKKSLERLIRE 123 (134)
T ss_dssp EEEEE-CSCHHHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHHHHH
T ss_pred EEEEE-eCchhHHHHHHHHHHhcCceEEE--ecChHHHHHHHHHHHHH
Confidence 33333 3322 2233444455532211 12456777777776654
No 323
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=33.66 E-value=2.5e+02 Score=26.50 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=49.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAE---GSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~-~Asdg~EALe~L~~~---~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
..+|..||-++......++.+...|+ .|. ...+..+.+..+... ...+|+|++|... .+-..+++.+.+.
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~ 179 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRLIDL 179 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHHHHh
Confidence 35899999999999999998888775 343 567888777655311 1379999999753 2345566666553
No 324
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=33.60 E-value=1.3e+02 Score=29.48 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
+...+...+.+.||.+..+. +.. +.++.+... .+|-||+-- .....+.++.+.. ..+|||++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~---~~~~~~~~~~l~~----~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRR--RPEAMVLSY---DGHTEQTIRLLQR----ASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEEEC---SCCCHHHHHHHHH----CCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeC---CCCCHHHHHHHHh----CCCCEEEEC
Confidence 34456666777899987543 232 445555554 688777632 1112356677765 578999883
No 325
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.54 E-value=1.6e+02 Score=27.52 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHHhhcCCCCceEEEEe
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
+...+.+.+.+.||.+..+. +.. +.++.+... .+|-||+--.-.. . ...++++++.. ..+|||++.
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~~ 106 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQ--HIDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHC--CCCEEEEecccccccCCcHHHHHHHHh----cCCCEEEEe
Confidence 44556667777899877544 233 345555544 7898887432221 1 23467777775 578999886
Q ss_pred c
Q 008655 116 A 116 (558)
Q Consensus 116 a 116 (558)
.
T Consensus 107 ~ 107 (298)
T 3tb6_A 107 A 107 (298)
T ss_dssp S
T ss_pred c
Confidence 4
No 326
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=33.37 E-value=2.9e+02 Score=29.44 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=49.9
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHHHHHHHHHhhcCCC------CceEEEEecCCCHHH
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLP-----------MTKGLKMLKYITRDKELQ------RIPVIMMSAQDEVSV 122 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~MP-----------~mDGlElL~~Ir~~~~~~------~iPVIVLSa~~d~e~ 122 (558)
....+.+.|..++.. ..|+|.+.+.-- +..-++++..+.+..... .+|||.=.+-.+...
T Consensus 290 G~V~t~~~a~~l~~a---Gad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~d 366 (503)
T 1me8_A 290 GNIVDGEGFRYLADA---GADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYH 366 (503)
T ss_dssp EEECSHHHHHHHHHH---TCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHH
T ss_pred ccccCHHHHHHHHHh---CCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHH
Confidence 367888888888765 478888744210 123455555554321001 578887678888999
Q ss_pred HHHHHHcCCCEEEe
Q 008655 123 VVKCLRLGAADYLV 136 (558)
Q Consensus 123 a~eAL~~GA~DYL~ 136 (558)
+.+||.+||+....
T Consensus 367 i~kAlalGA~~V~i 380 (503)
T 1me8_A 367 MTLALAMGADFIML 380 (503)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998854
No 327
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=33.33 E-value=1.7e+02 Score=28.34 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=56.8
Q ss_pred cEEEEEeCCHHHHHHHHHHH-HhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhc
Q 008655 33 VRILLCDNDSNSSDAVFSLL-VKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDK 104 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL-~~~gyeV~~---A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~ 104 (558)
..+++.+++......+.+.+ +..|.+|+. . .|....+..+... .||+|++-. ...+...+++.+++..
T Consensus 145 ~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~--~~d~v~~~~--~~~~~~~~~~~~~~~g 220 (353)
T 4gnr_A 145 KVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGK--DFDAIVVPG--YYNEAGKIVNQARGMG 220 (353)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTS--CCSEEECCS--CHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEec--CcHHHHHHHHHHHHcC
Confidence 34566666544444454444 455766542 1 3567778888765 899999643 3346777888888754
Q ss_pred CCCCceEEEEecCCCHHHHHHHHHcCC
Q 008655 105 ELQRIPVIMMSAQDEVSVVVKCLRLGA 131 (558)
Q Consensus 105 ~~~~iPVIVLSa~~d~e~a~eAL~~GA 131 (558)
...|++.............+....+
T Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (353)
T 4gnr_A 221 --IDKPIVGGDGFNGEEFVQQATAEKA 245 (353)
T ss_dssp --CCSCEEECGGGCSHHHHHHHCTTTC
T ss_pred --CCCcEEEecccccchhhhhhhhhhh
Confidence 4567776666666665555443333
No 328
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=33.30 E-value=82 Score=29.01 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=32.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIIL 84 (558)
+|+|||--.-....+.+.|++.|+++....+.++. . .+|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~----~~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----L----AADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----H----HCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----h----CCCEEEE
Confidence 79999976555667888899999998888886542 2 2587776
No 329
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=33.27 E-value=1.4e+02 Score=29.34 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCH---------HHHHHHHHhhcCCCCceEE
Q 008655 45 SDAVFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKG---------LKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~-~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDG---------lElL~~Ir~~~~~~~iPVI 112 (558)
...+...+.+.|+.++ ... +..+-++.+.... ...+.+. .+.+..| .++++++++. ..+||+
T Consensus 133 ~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~--~gfiy~v-s~~G~TG~~~~~~~~~~~~v~~vr~~---~~~Pv~ 206 (271)
T 1ujp_A 133 DPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHA--TGFVYAV-SVTGVTGMRERLPEEVKDLVRRIKAR---TALPVA 206 (271)
T ss_dssp CHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTC--CSCEEEE-CC------------CCHHHHHHHHTT---CCSCEE
T ss_pred HHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhC--CCCEEEE-ecCcccCCCCCCCccHHHHHHHHHhh---cCCCEE
Confidence 3445555566666533 222 2344444444442 2333333 4444333 4788888864 478988
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
+=.+-.+.+.+.++ .||+..+.=
T Consensus 207 vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 207 VGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp EESCCCSHHHHHHH--TTSSEEEEC
T ss_pred EEcCCCCHHHHHHh--cCCCEEEEC
Confidence 77777888888885 999999864
No 330
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=33.11 E-value=3.1e+02 Score=28.24 Aligned_cols=90 Identities=10% Similarity=-0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEeCCCCCC---------------------------
Q 008655 44 SSDAVFSLLVKCSYQVTS--V---RSPRQVIDALNAEGSDIDLILAEVDLPMT--------------------------- 91 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~--A---sdg~EALe~L~~~~~~PDLIILDi~MP~m--------------------------- 91 (558)
....|..+....+.-|+. + -+.+.|..+... .+|.|+++-. .+.
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a---Gad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY---GIKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT---TCCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC---CCCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 445555555554544443 2 367777766654 5898887543 231
Q ss_pred --CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe-CCC
Q 008655 92 --KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV-KPL 139 (558)
Q Consensus 92 --DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~-KP~ 139 (558)
.....+.+++... ..+|||.-.+-.+...+.+++.+||+.+.. .|+
T Consensus 251 g~pt~~~l~~v~~~~--~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~ 299 (368)
T 3vkj_A 251 GVPTAASIMEVRYSV--PDSFLVGSGGIRSGLDAAKAIALGADIAGMALPV 299 (368)
T ss_dssp SCBHHHHHHHHHHHS--TTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred cccHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 1224555665542 368999888889999999999999998844 443
No 331
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=33.04 E-value=61 Score=31.36 Aligned_cols=107 Identities=10% Similarity=0.034 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCC---------CCCCCHHHHHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVD---------LPMTKGLKMLKYI 100 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~---------MP~mDGlElL~~I 100 (558)
.++++|+.+.+ ....+.++....+-.|. -.-+..+..+.+.. .|++++-.. ..+.-|+.+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 35677776643 23334444433322233 22345555666653 477776433 1234466777776
Q ss_pred HhhcCCCCceEEEEecCCCHHHHHHHHHc--CCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 101 TRDKELQRIPVIMMSAQDEVSVVVKCLRL--GAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 101 r~~~~~~~iPVIVLSa~~d~e~a~eAL~~--GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
. ..+|||.... .. ..+.+.. |-..++..| +.++|.+.|..++.
T Consensus 263 a-----~G~PvI~s~~-~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 263 V-----SGTPVVGTGN-GC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp H-----TTCCEEECCT-TT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred h-----cCCCEEEcCC-CC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 5 5678875432 22 4456666 778889999 99999998887754
No 332
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=33.01 E-value=1.8e+02 Score=27.70 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC--------CHHHHHHHHHhcCCCceEEEEeCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR--------SPRQVIDALNAEGSDIDLILAEVDLP 89 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As--------dg~EALe~L~~~~~~PDLIILDi~MP 89 (558)
+..+|||..-.-.+-..|...|...|++|+.+. +.....+.+... .+|+||.-....
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~--~~d~vih~a~~~ 66 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASE--RIDQVYLAAAKV 66 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHH--CCSEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhc--CCCEEEEcCeec
Confidence 346899999999999999999988899877543 334444444433 589998766544
No 333
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=32.88 E-value=1.2e+02 Score=30.34 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCcCCCCCcEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 25 DGFIDRSKVRILLCDNDSNSS-DAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 25 ~~~m~m~~irVLIVDDd~~~r-~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
..+..|+++||.||.--..-+ ..+..+....+++|+.+.+... . .+.+-..+ |--++|+ .
T Consensus 18 ~~~~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~-------~--~~g~~~~~------~~~~ll~----~ 78 (330)
T 4ew6_A 18 LYFQSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG-------T--VEGVNSYT------TIEAMLD----A 78 (330)
T ss_dssp -CCCCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC-------C--CTTSEEES------SHHHHHH----H
T ss_pred hccccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh-------h--hcCCCccC------CHHHHHh----C
Confidence 334456789999999877665 3444444444677763333221 1 12111111 2222322 1
Q ss_pred cCCCCceEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 104 KELQRIPVIMMSAQ--DEVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 104 ~~~~~iPVIVLSa~--~d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
. +.+-+|++... .-.+.+.+|+++|..=|+-||+. .++..+.++.
T Consensus 79 ~--~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~ 127 (330)
T 4ew6_A 79 E--PSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEAL 127 (330)
T ss_dssp C--TTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred C--CCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHH
Confidence 1 23455555543 33668899999999999999974 4555554443
No 334
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=32.79 E-value=1.6e+02 Score=30.62 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=54.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-
Q 008655 61 SVRSPRQVIDALNAEGSDIDLILAEVDL-----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY- 134 (558)
Q Consensus 61 ~Asdg~EALe~L~~~~~~PDLIILDi~M-----P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY- 134 (558)
.+.+.++|..+... .+|.|++.-.- -+..-++++.++++.- ...+|||+-.+-.+...+.++|.+||+..
T Consensus 259 gv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av-~~~ipVia~GGI~~g~Dv~kalalGAd~V~ 334 (392)
T 2nzl_A 259 GILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAV-EGKVEVFLDGGVRKGTDVLKALALGAKAVF 334 (392)
T ss_dssp EECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH-TTSSEEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred ecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc-CCCCEEEEECCCCCHHHHHHHHHhCCCeeE
Confidence 45788888777654 58988884321 1234578888887642 13689998888899999999999999988
Q ss_pred EeCCC
Q 008655 135 LVKPL 139 (558)
Q Consensus 135 L~KP~ 139 (558)
|-.|+
T Consensus 335 iGr~~ 339 (392)
T 2nzl_A 335 VGRPI 339 (392)
T ss_dssp ECHHH
T ss_pred ECHHH
Confidence 44554
No 335
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=32.74 E-value=2.2e+02 Score=27.05 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~ 106 (558)
.+..-+|||..-..-+-..+...|.+.|+.|+ ...+...+.+.+... ...+.++..++-+.+.+ ++++.+.+..
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-- 99 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREM-- 99 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHH--
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHc--
Confidence 34456789999999999999999999999887 455655555544444 34555555555555444 3455555432
Q ss_pred CCceEEEEec
Q 008655 107 QRIPVIMMSA 116 (558)
Q Consensus 107 ~~iPVIVLSa 116 (558)
..+-+||-.+
T Consensus 100 g~iD~lvnnA 109 (266)
T 3grp_A 100 EGIDILVNNA 109 (266)
T ss_dssp TSCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4566666654
No 336
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=32.67 E-value=91 Score=30.02 Aligned_cols=83 Identities=8% Similarity=0.055 Sum_probs=53.4
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 51 LLVKCSYQVTSVR---SPRQVIDALNAEGSDIDLILAEVDLPMTKG-------LKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 51 lL~~~gyeV~~As---dg~EALe~L~~~~~~PDLIILDi~MP~mDG-------lElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
.+++.|.++..+- +..+.++.+... ..+|+|++=---|+.+| ++-++++++.. ..++| .+.+--+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I-~VdGGI~~ 184 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNI-QVDGGLNI 184 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEE-EEESSCCH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeE-EEECCCCH
Confidence 6677888877544 344555554431 03788866555565544 56667777643 24554 45665667
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008655 121 SVVVKCLRLGAADYLVK 137 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~K 137 (558)
+.+.++.++||+-++.=
T Consensus 185 ~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 185 ETTEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 88999999999998764
No 337
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=32.55 E-value=2.3e+02 Score=26.24 Aligned_cols=82 Identities=16% Similarity=0.026 Sum_probs=50.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHHHhhcCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK-MLKYITRDKELQR 108 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlE-lL~~Ir~~~~~~~ 108 (558)
++-+|||..-..-+-..+...|.+.|+.|+ ...+...+-+..... ...+.++-+++-+.+.++ +++.+.+.. ..
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~--g~ 77 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL--GNAVIGIVADLAHHEDVDVAFAAAVEWG--GL 77 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTSHHHHHHHHHHHHHHH--CS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--cCCceEEECCCCCHHHHHHHHHHHHHhc--CC
Confidence 345799999999999999999999999987 555655444433332 123444444444544443 455665532 45
Q ss_pred ceEEEEec
Q 008655 109 IPVIMMSA 116 (558)
Q Consensus 109 iPVIVLSa 116 (558)
+-+|+..+
T Consensus 78 id~lvnnA 85 (235)
T 3l6e_A 78 PELVLHCA 85 (235)
T ss_dssp CSEEEEEC
T ss_pred CcEEEECC
Confidence 66666654
No 338
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=32.41 E-value=2.4e+02 Score=26.89 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred CCCCCCCCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HH
Q 008655 19 NSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KM 96 (558)
Q Consensus 19 ~~~~~~~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGl-El 96 (558)
+........|.+....|||..-...+-..+...|.+.|++|+.+. +...+-+...+......+.++.+++-+.+.+ ++
T Consensus 16 ~~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 95 (276)
T 2b4q_A 16 PRGSHMHPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRL 95 (276)
T ss_dssp -----CCTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHH
T ss_pred ccccccccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHH
Confidence 333444555666667899999999999999999999999987554 5433332222211111455544444444443 34
Q ss_pred HHHHHhhcCCCCceEEEEec
Q 008655 97 LKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 97 L~~Ir~~~~~~~iPVIVLSa 116 (558)
++.+.+.. ..+-+||-.+
T Consensus 96 ~~~~~~~~--g~iD~lvnnA 113 (276)
T 2b4q_A 96 AQALGELS--ARLDILVNNA 113 (276)
T ss_dssp HHHHHHHC--SCCSEEEECC
T ss_pred HHHHHHhc--CCCCEEEECC
Confidence 55555432 4566666554
No 339
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.34 E-value=2.4e+02 Score=26.42 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEE
Q 008655 44 SSDAVFSLLVKCSYQVTSVRS---P---RQ---VIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMM 114 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~Asd---g---~E---ALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVL 114 (558)
+...+...+.+.||.+..+.. . .+ .++.+... .+|-||+--..+ + -+.++.+.. ..+|||++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~-~~~~~~l~~----~~iPvV~~ 96 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGR--DCDGVVVISHDL--H-DEDLDELHR----MHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHT--TCSEEEECCSSS--C-HHHHHHHHH----HCSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhc--CccEEEEecCCC--C-HHHHHHHhh----cCCCEEEE
Confidence 334556666778998775532 1 23 56666555 789888743222 2 356666664 35799988
Q ss_pred ec
Q 008655 115 SA 116 (558)
Q Consensus 115 Sa 116 (558)
..
T Consensus 97 ~~ 98 (290)
T 2rgy_A 97 NR 98 (290)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 340
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=32.33 E-value=1.4e+02 Score=29.66 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=58.4
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH---HHHHhhcCCC
Q 008655 32 KVRILLCDN-DSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKML---KYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDD-d~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL---~~Ir~~~~~~ 107 (558)
++||.||.- -..-...+. .|...+.+++.+.+.......+.+. .+.+-+.+ +--+++ +.|.+. ..+
T Consensus 3 mirvgiIG~gG~i~~~h~~-~l~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~------~~~~ll~~~~~l~~~-~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMR-AIKDTGNCLVSAYDINDSVGIIDSI--SPQSEFFT------EFEFFLDHASNLKRD-SAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHH-HHHHTTCEEEEEECSSCCCGGGGGT--CTTCEEES------SHHHHHHHHHHHTTS-TTT
T ss_pred ceEEEEECCCcHHHHHHHH-HHHhCCCEEEEEEcCCHHHHHHHhh--CCCCcEEC------CHHHHHHhhhhhhhc-cCC
Confidence 589999987 333444444 4444577766433322222222221 22222221 222333 233210 015
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHH
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWTH 150 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~~ 150 (558)
.+-+|++.... -.+.+.+|+++|..=|+-||+. .++..+.++.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 119 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVI 119 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHH
Confidence 56667666543 3678999999999999999964 5555554443
No 341
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=32.16 E-value=29 Score=32.05 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=32.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIIL 84 (558)
|||||.-......+.+.|++.|+++.........++.+... .+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 99999776666778889998998877555432223333332 4788887
No 342
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=32.12 E-value=2.1e+02 Score=25.37 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=58.8
Q ss_pred EEEEE--eCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHHHHhhcCCCC
Q 008655 34 RILLC--DNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTK--GLKMLKYITRDKELQR 108 (558)
Q Consensus 34 rVLIV--DDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mD--GlElL~~Ir~~~~~~~ 108 (558)
+|+|+ ..+..+...+...|...|..+.... ++.+....+.... +=|++|+ +...|.. -+++++.+++ ..
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~d~~i~-iS~sG~t~~~~~~~~~ak~----~g 114 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR-PTDLMIG-VSVWRYLRDTVAALAGAAE----RG 114 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC-TTEEEEE-ECCSSCCHHHHHHHHHHHH----TT
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC-CCCEEEE-EeCCCCCHHHHHHHHHHHH----CC
Confidence 45554 4456666777888888898888777 5666655554431 3355444 5666643 4566666665 56
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 109 IPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 109 iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
++||.+|...+..... -|+-.|.-|
T Consensus 115 ~~vi~IT~~~~s~l~~-----~ad~~l~~~ 139 (187)
T 3sho_A 115 VPTMALTDSSVSPPAR-----IADHVLVAA 139 (187)
T ss_dssp CCEEEEESCTTSHHHH-----HCSEEEECC
T ss_pred CCEEEEeCCCCCcchh-----hCcEEEEec
Confidence 8999999876654332 355555554
No 343
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=32.01 E-value=2.3e+02 Score=27.04 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=52.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~-Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~ 106 (558)
.+..-.|||..-..-+-..+...|.+.|++|+. ..+.+.+.+..... ...+.++-+++-+.+.+ ++++++.+..
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-- 77 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH--GGNAVGVVGDVRSLQDQKRAAERCLAAF-- 77 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--BTTEEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHHHHHHhc--
Confidence 344567899999999999999999999999874 45555444444333 23444444444444443 4566665543
Q ss_pred CCceEEEEec
Q 008655 107 QRIPVIMMSA 116 (558)
Q Consensus 107 ~~iPVIVLSa 116 (558)
..+-+||-.+
T Consensus 78 g~iD~lvnnA 87 (281)
T 3zv4_A 78 GKIDTLIPNA 87 (281)
T ss_dssp SCCCEEECCC
T ss_pred CCCCEEEECC
Confidence 4556665543
No 344
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=32.01 E-value=2.6e+02 Score=28.05 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCC--------CCCCHHHHHHHHHhhcCCCCceEEEEecCC------------C-----
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDL--------PMTKGLKMLKYITRDKELQRIPVIMMSAQD------------E----- 119 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~M--------P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~------------d----- 119 (558)
-..|++.+.+.+ ..+|+|+.... -++..+..+++. ++++||++-+++. .
T Consensus 150 i~~ave~i~~~G-n~~i~L~erg~~y~~~~~~vdl~~i~~lk~~-----~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v 223 (285)
T 3sz8_A 150 LKHVVSKCGEVG-NDRVMLCERGSSFGYDNLVVDMLGFRQMAET-----TGGCPVIFDVTHSLQCRDPLGDASGGRRRQV 223 (285)
T ss_dssp THHHHHHHHHTT-CCCEEEEECCEECSSSCEECCTTHHHHHHHH-----TTSCCEEEETTTTCC---------------H
T ss_pred HHHHHHHHHHcC-CCcEEEEeCCCCCCCCcCccCHHHHHHHHHh-----CCCCCEEEeCCCccccCCCcCCCCCCchhhH
Confidence 367788776643 67899987532 234555554433 1358999866665 3
Q ss_pred HHHHHHHHHcCCCE-EEeC
Q 008655 120 VSVVVKCLRLGAAD-YLVK 137 (558)
Q Consensus 120 ~e~a~eAL~~GA~D-YL~K 137 (558)
......|+.+||+. +|-|
T Consensus 224 ~~~a~AAvA~GA~gl~IE~ 242 (285)
T 3sz8_A 224 LDLARAGIAVGIAGLFLEA 242 (285)
T ss_dssp HHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 45678899999996 4555
No 345
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=31.99 E-value=2.5e+02 Score=28.36 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=44.3
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
+.+.+.+++.+.+.. .+|+|.+|- |+--++-+.++... .+ ..|..|+--+.+.+.+..+.|++-+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~--~~-v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTE--GR-AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHT--TS-EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhC--CC-CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 468999999998875 589999995 34333333333221 22 4566777777778888889999554
No 346
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=31.90 E-value=2.4e+02 Score=24.02 Aligned_cols=56 Identities=16% Similarity=0.341 Sum_probs=39.5
Q ss_pred ceEEEEeCCCCCCC------------------HHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 79 IDLILAEVDLPMTK------------------GLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 79 PDLIILDi~MP~mD------------------GlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
+.+|++|++=.-.+ -.++++++++ ..++++++|+.........+-++|...|+...
T Consensus 9 ~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 9 LKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQK----MGITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp CCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHT----TTCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred eeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHH----CCCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 67888887532221 2478888876 46799999998776655556678988888653
No 347
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=31.85 E-value=3.2e+02 Score=25.41 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+...+.+.||++..+. +.. +.++.+... .+|.||+--..+. .-.+.++++.. ..+|||++..
T Consensus 21 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 91 (290)
T 2fn9_A 21 AETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAA--GYDAIIFNPTDAD-GSIANVKRAKE----AGIPVFCVDR 91 (290)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCSCTT-TTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEecCChH-HHHHHHHHHHH----CCCeEEEEec
Confidence 3445666677899877543 333 345555444 7898887432211 11346666664 4689988864
No 348
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.82 E-value=99 Score=30.27 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC----CCC-CHHHHHHHHHhhcCCCCceEEE-EecCCCHHHHHHHHHcCCCEEEeC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDL----PMT-KGLKMLKYITRDKELQRIPVIM-MSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~M----P~m-DGlElL~~Ir~~~~~~~iPVIV-LSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
+..+.++.+... ..|.+-+|+.- |.+ -|.++++.|++.. +..|+.+ |--.+-...+..+.++||+-+...
T Consensus 41 ~L~~~i~~l~~~--G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLAA--GADNIHFDVMDNHYVPNLTFGPMVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHc--CCCEEEEEecCCCcCcchhcCHHHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 567888888765 46666666632 333 3889999999753 3567665 333344557778889999888776
Q ss_pred CCCHHHHHHHHH
Q 008655 138 PLRTNELLNLWT 149 (558)
Q Consensus 138 P~~~eeL~~~L~ 149 (558)
......+.+.++
T Consensus 117 ~Ea~~~~~~~i~ 128 (246)
T 3inp_A 117 PEASEHIDRSLQ 128 (246)
T ss_dssp GGGCSCHHHHHH
T ss_pred cccchhHHHHHH
Confidence 544344444333
No 349
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.70 E-value=1.8e+02 Score=28.15 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=56.0
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHH
Q 008655 50 SLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM-T-KGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKC 126 (558)
Q Consensus 50 ~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~-m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eA 126 (558)
+...+.|..+. -+.+..|+...++. .+|+|=+ .|. . -|.++++.|+. .++++|++..-+- +.+.+.++
T Consensus 121 ~~~~~~gi~~ipGv~TptEi~~A~~~---Gad~vK~---FPa~~~gG~~~lkal~~--p~p~ip~~ptGGI-~~~n~~~~ 191 (232)
T 4e38_A 121 RACQEIGIDIVPGVNNPSTVEAALEM---GLTTLKF---FPAEASGGISMVKSLVG--PYGDIRLMPTGGI-TPSNIDNY 191 (232)
T ss_dssp HHHHHHTCEEECEECSHHHHHHHHHT---TCCEEEE---CSTTTTTHHHHHHHHHT--TCTTCEEEEBSSC-CTTTHHHH
T ss_pred HHHHHcCCCEEcCCCCHHHHHHHHHc---CCCEEEE---CcCccccCHHHHHHHHH--HhcCCCeeeEcCC-CHHHHHHH
Confidence 33444466654 56799999999865 4888876 563 3 38999999986 3478888865444 46778899
Q ss_pred HHcCCCEEEe
Q 008655 127 LRLGAADYLV 136 (558)
Q Consensus 127 L~~GA~DYL~ 136 (558)
+++|+...+.
T Consensus 192 l~aGa~~~vg 201 (232)
T 4e38_A 192 LAIPQVLACG 201 (232)
T ss_dssp HTSTTBCCEE
T ss_pred HHCCCeEEEE
Confidence 9999876543
No 350
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=31.69 E-value=1.4e+02 Score=29.61 Aligned_cols=34 Identities=9% Similarity=-0.006 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHhCCCEEEEECC
Q 008655 31 SKVRILLCDNDS----NSSDAVFSLLVKCSYQVTSVRS 64 (558)
Q Consensus 31 ~~irVLIVDDd~----~~r~~L~~lL~~~gyeV~~Asd 64 (558)
+++|||++-... .-...|...|.+.|++|..+..
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 446999986541 1123466777888999886543
No 351
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=31.67 E-value=1.7e+02 Score=28.74 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHH----HHHHHHHHhCCCEEEEECC-------------------------------------------
Q 008655 32 KVRILLCDNDSNSS----DAVFSLLVKCSYQVTSVRS------------------------------------------- 64 (558)
Q Consensus 32 ~irVLIVDDd~~~r----~~L~~lL~~~gyeV~~Asd------------------------------------------- 64 (558)
++|||++-....-- ..|...|.+.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 65 ----------------------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 65 ----------------------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
..+..+.++.. +||+|+.|. +...|.-+.+. ..+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PD~Vv~~~--~~~~~~~aa~~-------~giP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAW--RPSVLLVDV--CALIGRVLGGL-------LDLPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCHHHHHHHHH-------TTCCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhc--CCCEEEeCc--chhHHHHHHHH-------hCCCEEEEe
No 352
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=31.63 E-value=1.7e+02 Score=28.24 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCC--ceEEEEeCCCCCCCHH-HHHHHHHhhcCCCCceEEEEe
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSD--IDLILAEVDLPMTKGL-KMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~--PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~iPVIVLS 115 (558)
...+...+.+.||++..+. +.. +.++.+... . +|.||+--. ..+.. ++++.+.. ..+|||++.
T Consensus 24 ~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~--~~~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~~~ 95 (332)
T 2rjo_A 24 NKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQK--TGGNLVLNVDPN--DSADARVIVEACSK----AGAYVTTIW 95 (332)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHH--TTTCEEEEECCS--SHHHHHHHHHHHHH----HTCEEEEES
T ss_pred HHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHC--CCCCCEEEEeCC--CHHHHHHHHHHHHH----CCCeEEEEC
Confidence 3445556667798876543 232 345555444 6 998887421 11222 45666654 357988875
Q ss_pred c
Q 008655 116 A 116 (558)
Q Consensus 116 a 116 (558)
.
T Consensus 96 ~ 96 (332)
T 2rjo_A 96 N 96 (332)
T ss_dssp C
T ss_pred C
Confidence 4
No 353
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=31.59 E-value=1.1e+02 Score=29.48 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=50.5
Q ss_pred EEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 59 VTSVRSPRQVIDALNAE-GSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~-~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
|+...+.++++.+.+.. ....++|=+.+ -.-++++.++.|++.. +. .+|-.-.--+.+.+.+++++||.-.++
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~~~I~~l~~~~--p~-~~IGAGTVlt~~~a~~ai~AGA~fivs- 91 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTL--RTEAGLAAISAIKKAV--PE-AIVGAGTVCTADDFQKAIDAGAQFIVS- 91 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHC--TT-SEEEEECCCSHHHHHHHHHHTCSEEEE-
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHC--CC-CeEeeccccCHHHHHHHHHcCCCEEEe-
Confidence 44455555555554331 01344444333 3446889999998753 33 566555667899999999999987776
Q ss_pred CCCHHHHHH
Q 008655 138 PLRTNELLN 146 (558)
Q Consensus 138 P~~~eeL~~ 146 (558)
|....++..
T Consensus 92 P~~~~evi~ 100 (217)
T 3lab_A 92 PGLTPELIE 100 (217)
T ss_dssp SSCCHHHHH
T ss_pred CCCcHHHHH
Confidence 554444443
No 354
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=31.54 E-value=2e+02 Score=29.78 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=46.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC---C------EEE-EECCHHHHHHHHHhcCCCceEEEEeCCC-CC------CCHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCS---Y------QVT-SVRSPRQVIDALNAEGSDIDLILAEVDL-PM------TKGL 94 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~g---y------eV~-~Asdg~EALe~L~~~~~~PDLIILDi~M-P~------mDGl 94 (558)
..+|.+||-|+.+.+..++.|...+ + ++. ...|+.+.++.+......+|+||+|.-- |. .-..
T Consensus 211 ~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~ 290 (364)
T 2qfm_A 211 PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTW 290 (364)
T ss_dssp CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHH
Confidence 3689999999999998888765321 1 233 5688988887653222379999999854 41 2345
Q ss_pred HHHHHH
Q 008655 95 KMLKYI 100 (558)
Q Consensus 95 ElL~~I 100 (558)
++.+.+
T Consensus 291 eFy~~~ 296 (364)
T 2qfm_A 291 EFLRLI 296 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666666
No 355
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=31.41 E-value=1.3e+02 Score=32.31 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
+..+.++.+.+. .+|+|.+|...+...+ ++++++|++.. +.+|||+- .-.+.+.+..+.++||+.++.
T Consensus 256 d~~era~aLvea--Gvd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKA--SVDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhh--ccceEEecccccchhhhhhHHHHHHHhC--CCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 334445555444 6999999988776554 46899998753 56777753 345678899999999988874
No 356
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=31.08 E-value=2.3e+02 Score=26.69 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCEEEE-EC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTS-VR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~-As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+.+.+.+.||.+.. .. +.. +.++.+... .+|.||+--..+. .-.+.++++.. ..+|||++..
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 94 (305)
T 3g1w_A 24 KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAK--NPAGIAISAIDPV-ELTDTINKAVD----AGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHH--CCSEEEECCSSTT-TTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHh--CCCEEEEcCCCHH-HHHHHHHHHHH----CCCcEEEECC
Confidence 4455566677998876 32 333 345555445 7998887432221 12456777765 5689998864
No 357
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=31.04 E-value=99 Score=31.38 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=46.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-----CHHHHHHHHHhh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMT-----KGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~m-----DGlElL~~Ir~~ 103 (558)
..+|.+||=++.+.+..++.+... +-+|. ...|+.+.+..+.. ..+|+||+|+..+.. ...++++.+++.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~ 189 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRG 189 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCccccchhhhHHHHHHHHHHh
Confidence 468999999999998888877532 22333 56788776654322 379999999755431 124667766653
No 358
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=30.97 E-value=1.5e+02 Score=28.03 Aligned_cols=68 Identities=9% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCHHHH---HHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCce
Q 008655 40 NDSNSS---DAVFSLLVKCSYQVTSVRSP------RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIP 110 (558)
Q Consensus 40 Dd~~~r---~~L~~lL~~~gyeV~~Asdg------~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iP 110 (558)
.++... ..+.+.+.+.||.+..+... .+.++.+... .+|-||+--.. .+ -++++.+.. ..+|
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~~--~~-~~~~~~l~~----~~iP 93 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQR--MVDAFILLYSK--EN-DPIKQMLID----ESMP 93 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTT--CCSEEEESCCC--TT-CHHHHHHHH----TTCC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhC--CcCEEEEcCcc--cC-hHHHHHHHh----CCCC
Confidence 344444 44555666779998755421 2345555554 78988874211 11 256666765 4689
Q ss_pred EEEEec
Q 008655 111 VIMMSA 116 (558)
Q Consensus 111 VIVLSa 116 (558)
||++..
T Consensus 94 vV~i~~ 99 (295)
T 3hcw_A 94 FIVIGK 99 (295)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 998864
No 359
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=30.89 E-value=2.6e+02 Score=25.43 Aligned_cols=83 Identities=7% Similarity=0.029 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCHHHHHH----HHHHHHhCCCEEE-EEC---CHHHHHHHHHhc---CCCceEEEEeCCCCCCC-------
Q 008655 31 SKVRILLCDNDSNSSDA----VFSLLVKCSYQVT-SVR---SPRQVIDALNAE---GSDIDLILAEVDLPMTK------- 92 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~----L~~lL~~~gyeV~-~As---dg~EALe~L~~~---~~~PDLIILDi~MP~mD------- 92 (558)
...+|+++.|+-..... +...|. ++.|. ..- +..+.+..+... ..+||+||+-+..-+..
T Consensus 37 ~~~~i~~~GDSit~g~~~~~~~~~~l~--~~~v~n~g~~G~t~~~~~~~~~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~ 114 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLMHQCEIWRELFS--PLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVT 114 (232)
T ss_dssp CCCSEEEEESHHHHTHHHHSCHHHHTG--GGCEEEEECTTCCHHHHHHHHHTTTTTTCCCSEEEEECCTTCTTSCHHHHH
T ss_pred CCCCEEEEechHhhccCccccHHHHCC--CCceEEeecccccHHHHHHHHhcCccccCCCCEEEEEeecCCCCCCHHHHH
Confidence 35789999999876533 334443 34444 333 344555555431 23799999987665532
Q ss_pred --HHHHHHHHHhhcCCCCceEEEEecC
Q 008655 93 --GLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 93 --GlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
=.++++.|++.. +..+||+++-.
T Consensus 115 ~~l~~~i~~l~~~~--p~~~ii~~~~~ 139 (232)
T 1es9_A 115 GGIKAIVQLVNERQ--PQARVVVLGLL 139 (232)
T ss_dssp HHHHHHHHHHHHHS--TTCEEEEECCC
T ss_pred HHHHHHHHHHHHHC--CCCeEEEecCC
Confidence 124566666643 56788888754
No 360
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=30.74 E-value=1.6e+02 Score=27.30 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=50.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKE 105 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~-Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~ 105 (558)
|.+...+|||..-...+-..+...|.+.|++|+. ..+...+.+..... ...+.++.+++-+.+.+ ++++.+.+..
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~- 84 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKF- 84 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHC-
Confidence 4455568999999999999999999999999874 44433222222222 12344444444444443 3455555432
Q ss_pred CCCceEEEEec
Q 008655 106 LQRIPVIMMSA 116 (558)
Q Consensus 106 ~~~iPVIVLSa 116 (558)
..+-+||..+
T Consensus 85 -g~id~li~~A 94 (265)
T 2o23_A 85 -GRVDVAVNCA 94 (265)
T ss_dssp -SCCCEEEECC
T ss_pred -CCCCEEEECC
Confidence 3555666553
No 361
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=30.64 E-value=1.2e+02 Score=27.69 Aligned_cols=67 Identities=7% Similarity=0.095 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gy-eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
.+|..||-++...+..+..+...++ .|. ...|..+.+.. ....+|+|++|.-....+..++++.|.+
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh---cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 4899999999999999988887765 343 44566554432 2236999999865333445567777765
No 362
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=30.62 E-value=1.8e+02 Score=24.11 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 42 SNSSDAVFSLLVKCSYQVTSV---RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 42 ~~~r~~L~~lL~~~gyeV~~A---sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
......+..++......|.+. .....|..+|...+ ...-..|+..- -++.++.+.+.+......+|+|++-+
T Consensus 4 ~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~~--i~~~~~dvd~~-~~~~~~~~~l~~~~g~~tvP~vfi~g 78 (114)
T 3h8q_A 4 EELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLG--VECNVLELDQV-DDGARVQEVLSEITNQKTVPNIFVNK 78 (114)
T ss_dssp HHHHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHTT--CCCEEEETTTS-TTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred HHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHcC--CCcEEEEecCC-CChHHHHHHHHHHhCCCccCEEEECC
Confidence 445677888887766666543 35678888888764 44455566542 24666655554433357899999865
No 363
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=30.56 E-value=3.3e+02 Score=25.48 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=52.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~i 109 (558)
.-+|||..-...+-..+...|.+.|++|+ ...+...+.+.+... ...+.++.+++-+.+.+ ++++.+.+.. ..+
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~--g~i 83 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHA--GGL 83 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHS--SSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHc--CCC
Confidence 35789999999999999999999999987 555666555555444 23444444444454444 3566666542 456
Q ss_pred eEEEEec
Q 008655 110 PVIMMSA 116 (558)
Q Consensus 110 PVIVLSa 116 (558)
-+|+-.+
T Consensus 84 d~lv~~A 90 (259)
T 4e6p_A 84 DILVNNA 90 (259)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 6666654
No 364
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=30.55 E-value=1.3e+02 Score=28.25 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 70 DALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 70 e~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
|.+.+. +|||||...... .-+.+++|.+ ..+|++++.....
T Consensus 53 E~i~~l--~PDlIi~~~~~~---~~~~~~~L~~----~gipvv~~~~~~~ 93 (255)
T 3md9_A 53 EGILAM--KPTMLLVSELAQ---PSLVLTQIAS----SGVNVVTVPGQTT 93 (255)
T ss_dssp HHHHTT--CCSEEEEETTCS---CHHHHHHHHH----TTCEEEEECCCCS
T ss_pred HHHHcc--CCCEEEEcCCcC---chhHHHHHHH----cCCcEEEeCCCCC
Confidence 444444 799998875431 1355666664 3578888864333
No 365
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=30.39 E-value=3e+02 Score=24.75 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=53.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEG-SDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~-~Asdg~EALe~L~~~~-~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
..+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..+|+|++|...+ .-..+++.+.+.- .+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~L-~p 159 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKLS-RP 159 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHTC-CT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHhc-CC
Confidence 35899999999999999988887765 243 6678888776665421 3699999996532 3345666666532 23
Q ss_pred CceEEEEe
Q 008655 108 RIPVIMMS 115 (558)
Q Consensus 108 ~iPVIVLS 115 (558)
.- +|++.
T Consensus 160 gG-~lv~~ 166 (223)
T 3duw_A 160 GT-VIIGD 166 (223)
T ss_dssp TC-EEEEE
T ss_pred Cc-EEEEe
Confidence 33 55554
No 366
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=30.26 E-value=2.4e+02 Score=26.88 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=25.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEE
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTS 61 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~ 61 (558)
+.+|||..-.-.+-..|...|.+.|++|..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~ 31 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPII 31 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 358999999999999999988888988764
No 367
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=30.24 E-value=2e+02 Score=28.24 Aligned_cols=84 Identities=8% Similarity=0.069 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 33 VRILLCDNDSNS----SDAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 33 irVLIVDDd~~~----r~~L~~lL~~~gyeV~~---A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
-+|.||-++... .+.+.+.|.+.|.+|.. . .+....+..+... .||+|++.. .+.+...+++.++
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~--~~dav~~~~--~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQA--GVEYVVHQN--VAGPVANILKDAK 219 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHT--TCCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhc--CCCEEEEec--CcchHHHHHHHHH
Confidence 455555443332 23466667777876542 1 2455667766655 799998754 2345667778887
Q ss_pred hhcCCCCceEEEEecCCCHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSV 122 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~ 122 (558)
+.. ..+|++......+...
T Consensus 220 ~~g--~~~~~~~~~~~~~~~~ 238 (392)
T 3lkb_A 220 RLG--LKMRHLGAHYTGGPDL 238 (392)
T ss_dssp HTT--CCCEEEECGGGCSHHH
T ss_pred HcC--CCceEEEecCcccHHH
Confidence 754 4567665444444443
No 368
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=30.10 E-value=71 Score=29.16 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=45.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCC-ceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSY---QVT-SVRSPRQVIDALNAEGSD-IDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gy---eV~-~Asdg~EALe~L~~~~~~-PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
.+|.-||-++...+..+..+...+. .|. ...|..+.+..+. ... +|+|++|.-....+-.++++.+..
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc--cCCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 5899999999999999888877765 344 4456655432211 126 899999865333344567777753
No 369
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=30.01 E-value=2e+02 Score=27.04 Aligned_cols=63 Identities=8% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+.+.||.+..+. +. .+.++.+... .+|-||+--. ..+ -+.++++.. ..+|||++..
T Consensus 35 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~-~~~~~~l~~----~~iPvV~~~~ 103 (289)
T 2fep_A 35 ARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGK--QVDGIVFMGG--NIT-DEHVAEFKR----SPVPIVLAAS 103 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--CCC-HHHHHHHHH----SSSCEEEESC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecC--CCC-HHHHHHHHh----cCCCEEEEcc
Confidence 3445666677899876543 23 2345555544 7898876432 122 345666654 5689998864
No 370
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=29.82 E-value=1.4e+02 Score=29.79 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As 63 (558)
|..++.+|||+...... ..+...+...|++|+.+.
T Consensus 7 m~~~~~~ili~g~g~~~-~~~~~a~~~~G~~v~~~~ 41 (391)
T 1kjq_A 7 LRPAATRVMLLGSGELG-KEVAIECQRLGVEVIAVD 41 (391)
T ss_dssp TSTTCCEEEEESCSHHH-HHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHcCCEEEEEE
Confidence 33445799999876544 445666777899887544
No 371
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=29.76 E-value=57 Score=32.71 Aligned_cols=103 Identities=10% Similarity=0.140 Sum_probs=57.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEE-eCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-SYQVTSVRSPRQVIDALNAEGSDIDLILA-EVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-gyeV~~Asdg~EALe~L~~~~~~PDLIIL-Di~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++||.||.--..-+......|... +++|..+.+...+.+.....+ .+.+-+. |+ +.+... +.+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~-~~~~~~~~~~-----------~~ll~~---~~~ 66 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFK-EKGVNFTADL-----------NELLTD---PEI 66 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHH-TTTCEEESCT-----------HHHHSC---TTC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhC-CCCCeEECCH-----------HHHhcC---CCC
Confidence 579999998776654555555544 678763333222222222110 1222222 22 233322 345
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008655 110 PVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLWT 149 (558)
Q Consensus 110 PVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L~ 149 (558)
-+|+++... -.+.+.+|+++|..=|+-||+. .++..+.++
T Consensus 67 D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~ 110 (349)
T 3i23_A 67 ELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFA 110 (349)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHH
Confidence 666665433 3678889999999999999975 555544443
No 372
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=29.74 E-value=1.5e+02 Score=24.84 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEC---CHHHH-HHHHHhcCCC---ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 41 DSNSSDAVFSLLVKCSYQVTSVR---SPRQV-IDALNAEGSD---IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 41 d~~~r~~L~~lL~~~gyeV~~As---dg~EA-Le~L~~~~~~---PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
++.....+.+++......+.... ....+ ..+|... . ++...+|+.... +|.++.+.|.+......+|+|+
T Consensus 11 ~~~~~~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~~--~~~~i~~~~vdid~~~-~~~~~~~~l~~~~g~~tvP~vf 87 (118)
T 3c1r_A 11 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKL--KVPRSKVLVLQLNDMK-EGADIQAALYEINGQRTVPNIY 87 (118)
T ss_dssp CHHHHHHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTTS--CCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEE
T ss_pred CHHHHHHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHHc--CCCCCCeEEEECccCC-ChHHHHHHHHHHhCCCCcCEEE
Confidence 35566777788776655555433 45677 6666654 4 788888886533 4566666665543346899997
Q ss_pred Eec
Q 008655 114 MSA 116 (558)
Q Consensus 114 LSa 116 (558)
+-+
T Consensus 88 i~g 90 (118)
T 3c1r_A 88 ING 90 (118)
T ss_dssp ETT
T ss_pred ECC
Confidence 754
No 373
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=29.73 E-value=2.6e+02 Score=23.79 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gy-eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
...+|..+|-++.........+...+. .+. ...+..+. +... .+|+|+++.- .+-.++++.+.+.
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~--~~D~i~~~~~---~~~~~~l~~~~~~ 122 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDKL--EFNKAFIGGT---KNIEKIIEILDKK 122 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGGC--CCSEEEECSC---SCHHHHHHHHHHT
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccCC--CCcEEEECCc---ccHHHHHHHHhhC
Confidence 456899999999999999888887764 233 55676662 2223 7999999865 5667788888764
No 374
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=29.73 E-value=2.8e+02 Score=29.91 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHHhhcC----CCCceEEEE
Q 008655 46 DAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKE----LQRIPVIMM 114 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~~Ir~~~~----~~~iPVIVL 114 (558)
..|..+-+..+.-|+ ...+.++|..+... ..|.|++.-+-- ....++++..+.+.-. ...+|||+-
T Consensus 333 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~ 409 (511)
T 1kbi_A 333 KDIEELKKKTKLPIVIKGVQRTEDVIKAAEI---GVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD 409 (511)
T ss_dssp HHHHHHHHHCSSCEEEEEECSHHHHHHHHHT---TCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred HHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc---CCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 334444343444333 46678887776554 589888843211 1234677777765421 137999999
Q ss_pred ecCCCHHHHHHHHHcCCCEE-EeCCC
Q 008655 115 SAQDEVSVVVKCLRLGAADY-LVKPL 139 (558)
Q Consensus 115 Sa~~d~e~a~eAL~~GA~DY-L~KP~ 139 (558)
.+-.+...+.++|.+||+.. |-.|+
T Consensus 410 GGI~~g~Dv~kaLalGAdaV~iGr~~ 435 (511)
T 1kbi_A 410 GGVRRGTDVLKALCLGAKGVGLGRPF 435 (511)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 99999999999999999988 44454
No 375
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=29.67 E-value=48 Score=31.20 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=36.2
Q ss_pred CceEEEEeCCCCCCC-------HHHHHHHHHhhcC--CCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 78 DIDLILAEVDLPMTK-------GLKMLKYITRDKE--LQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 78 ~PDLIILDi~MP~mD-------GlElL~~Ir~~~~--~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..|.|+++-..|+.. +++.+++|++... ..++||++.-+-. .+.+.+++++||+.++.
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 468887777666543 3455566665310 0157777655544 55666788899988855
No 376
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=29.61 E-value=3.1e+02 Score=29.70 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCceEEE-EeCCC----CCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH-cCCCEEEeC-
Q 008655 65 PRQVIDALNAEGSDIDLIL-AEVDL----PMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR-LGAADYLVK- 137 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLII-LDi~M----P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~-~GA~DYL~K- 137 (558)
..+..+.+.+. ..+.|+ .++.- .+. -++++++|.+. ..+|||.-.+-.+.+.+.++++ .||+..+.=
T Consensus 454 ~~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~-d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~ 527 (555)
T 1jvn_A 454 VWELTRACEAL--GAGEILLNCIDKDGSNSGY-DLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAG 527 (555)
T ss_dssp HHHHHHHHHHT--TCCEEEECCGGGTTTCSCC-CHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESH
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCCCCCCC-CHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHH
Confidence 34555555544 356555 45532 233 37899999875 5789988777888999999998 899998653
Q ss_pred -----CCCHHHHHHH
Q 008655 138 -----PLRTNELLNL 147 (558)
Q Consensus 138 -----P~~~eeL~~~ 147 (558)
++...++...
T Consensus 528 a~~~~~~~~~e~~~~ 542 (555)
T 1jvn_A 528 MFHRGEFTVNDVKEY 542 (555)
T ss_dssp HHHTTSCCHHHHHHH
T ss_pred HHHcCCCCHHHHHHH
Confidence 5666666553
No 377
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=29.57 E-value=88 Score=30.90 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=21.4
Q ss_pred CcEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC
Q 008655 32 KVRILLCDNDSNS-----SDAVFSLLVKCSYQVTSVR 63 (558)
Q Consensus 32 ~irVLIVDDd~~~-----r~~L~~lL~~~gyeV~~As 63 (558)
.+|||++-- +.. ...|.+.|.+.|++|..+.
T Consensus 22 ~MRIL~~~~-p~~GHv~P~l~LA~~L~~rGh~Vt~~t 57 (400)
T 4amg_A 22 SMRALFITS-PGLSHILPTVPLAQALRALGHEVRYAT 57 (400)
T ss_dssp CCEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEECC-CchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 469999853 222 2357788888899998665
No 378
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=29.53 E-value=1e+02 Score=25.20 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 42 SNSSDAVFSLLVKCSYQVTS---VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 42 ~~~r~~L~~lL~~~gyeV~~---Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+...+..++......+.. |.....+..+|...+ .+....|+..-.-++.++.+.+........+|+|++-+
T Consensus 6 ~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g 81 (113)
T 3rhb_A 6 SRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLG--VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCG 81 (113)
T ss_dssp CHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHTT--CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred HHHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHHHcC--CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECC
Confidence 44566777888776655543 335788888888764 44455666542234666666665543347899998865
No 379
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.48 E-value=2.1e+02 Score=27.95 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CCC--CCCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEV-DLP--MTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi-~MP--~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
...+.....+.|.++. .+.|.+|+...+... .+|+|-+.. ++- ..| ++...+|...- ...+++|.-++-.+.
T Consensus 139 l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~--g~~iIGinnr~l~t~~~d-~~~~~~l~~~i-p~~~~vIaEsGI~t~ 214 (251)
T 1i4n_A 139 IKEIYEAAEELGMDSLVEVHSREDLEKVFSVI--RPKIIGINTRDLDTFEIK-KNVLWELLPLV-PDDTVVVAESGIKDP 214 (251)
T ss_dssp HHHHHHHHHTTTCEEEEEECSHHHHHHHHTTC--CCSEEEEECBCTTTCCBC-TTHHHHHGGGS-CTTSEEEEESCCCCG
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CCCEEEEeCcccccCCCC-HHHHHHHHHhC-CCCCEEEEeCCCCCH
Confidence 3444455556798865 889999988877541 478886544 222 122 44555555431 134677777777888
Q ss_pred HHHHHHHHcCCCEEEe
Q 008655 121 SVVVKCLRLGAADYLV 136 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~ 136 (558)
+.+.+++++ |+.+|.
T Consensus 215 edv~~~~~~-a~avLV 229 (251)
T 1i4n_A 215 RELKDLRGK-VNAVLV 229 (251)
T ss_dssp GGHHHHTTT-CSEEEE
T ss_pred HHHHHHHHh-CCEEEE
Confidence 899999999 999976
No 380
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=29.39 E-value=2.6e+02 Score=26.14 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+...+.+.||++..+. +.. +.++.+... .+|-||+--..+. ..++++.+.. ..+|||++..
T Consensus 39 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~~--~~~~~~~~~~----~~iPvV~~~~ 108 (293)
T 2iks_A 39 ANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQR--QVDAIIVSTSLPP--EHPFYQRWAN----DPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCSSCT--TCHHHHTTTT----SSSCEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCCC--cHHHHHHHHh----CCCCEEEECC
Confidence 3445556667899877543 232 345555544 7898887432221 1234455543 5689998864
No 381
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=29.23 E-value=2e+02 Score=26.24 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCCEEEE---EC-----CHH-----------HHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHh
Q 008655 43 NSSDAVFSLLVKCSYQVTS---VR-----SPR-----------QVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITR 102 (558)
Q Consensus 43 ~~r~~L~~lL~~~gyeV~~---As-----dg~-----------EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~ 102 (558)
.....+.+.|++.| .|.. .. +++ ..++++. ..|+||..+.-|+ ..++|+--...
T Consensus 19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~~~d~Gt~~EiG~A~a- 92 (152)
T 4fyk_A 19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVTQPSLGVGYELGRAVA- 92 (152)
T ss_dssp HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECSSCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCCCCCCCHHHHHHHHHH-
Confidence 45567888888888 5631 11 111 1233343 4699999888554 23555543332
Q ss_pred hcCCCCceEEEEecCC---CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 103 DKELQRIPVIMMSAQD---EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~---d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
...||+++.... .....++....| ..|..+.+...+|...|.+.+.
T Consensus 93 ----lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 93 ----LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp ----TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC
T ss_pred ----cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHH
Confidence 467999987633 222233333332 3477788877777777766543
No 382
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=29.23 E-value=2.3e+02 Score=27.32 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=51.9
Q ss_pred cEEEEE-eCCHHHH---HHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 33 VRILLC-DNDSNSS---DAVFSLLVKCSYQVTS---V----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 33 irVLIV-DDd~~~r---~~L~~lL~~~gyeV~~---A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
-+|.+| +|+..-+ +.+.+.|.+.|.++.. . .+....+..+... .||+|++.... .+...+++.++
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~--~~d~i~~~~~~--~~a~~~~~~~~ 215 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDE--APQAIYLAMAY--EDAAPFLRALR 215 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHH--CCSEEEEESCH--HHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhc--CCCEEEEccCc--hHHHHHHHHHH
Confidence 355544 4444333 4456667777876542 2 3566777777665 79999987532 24567888888
Q ss_pred hhcCCCCceEEEEecCCCHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a 123 (558)
+.. ..+|||...........
T Consensus 216 ~~g--~~~p~~~~~~~~~~~~~ 235 (358)
T 3hut_A 216 ARG--SALPVYGSSALYSPKFI 235 (358)
T ss_dssp HTT--CCCCEEECGGGCSHHHH
T ss_pred HcC--CCCcEEecCcccCHHHH
Confidence 764 46787765555555443
No 383
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=29.23 E-value=1.3e+02 Score=29.97 Aligned_cols=76 Identities=21% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCcEEEEEeCC----HHHHHHHHHHHHhCCCEEEEECCHH--------------------------------------
Q 008655 29 DRSKVRILLCDND----SNSSDAVFSLLVKCSYQVTSVRSPR-------------------------------------- 66 (558)
Q Consensus 29 ~m~~irVLIVDDd----~~~r~~L~~lL~~~gyeV~~Asdg~-------------------------------------- 66 (558)
...++|||++-.. -.-...|...|.+.|++|..+....
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPR 91 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCS
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCccccccc
Q ss_pred ----------------------HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEe
Q 008655 67 ----------------------QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 67 ----------------------EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLS 115 (558)
+..+.++.. +||+|+.|. ...-|.-+.+.+. +|+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~--~~~~~~~~a~~~g-------iP~v~~~ 151 (398)
T 4fzr_A 92 EEKPLLEHIGRGYGRLVLRMRDEALALAERW--KPDLVLTET--YSLTGPLVAATLG-------IPWIEQS 151 (398)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCTHHHHHHHHHT-------CCEEEEC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEECc--cccHHHHHHHhhC-------CCEEEec
No 384
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=29.20 E-value=2.4e+02 Score=26.30 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=48.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAE---GSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~-~Asdg~EALe~L~~~---~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
..+|..||-++......++.+...|+ .|. ...+..+.+..+... ...+|+|++|...+ +-.++++.+.+
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 36899999999999999999888775 243 567888877665321 13799999996432 33456666654
No 385
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=29.07 E-value=1.1e+02 Score=28.63 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=51.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ---VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye---V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
..+|..||-++......++.+...|+. |. ...+..+.+..+.. ..+|+|++|.... +-.++++.+.+.- .
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~--~~~~~l~~~~~~L--k 154 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPM--DLKALVDAAWPLL--R 154 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTT--THHHHHHHHHHHE--E
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHH--HHHHHHHHHHHHc--C
Confidence 358999999999999999999887754 54 45566666544322 3799999997543 3344566655431 2
Q ss_pred CceEEEEe
Q 008655 108 RIPVIMMS 115 (558)
Q Consensus 108 ~iPVIVLS 115 (558)
+--+|++.
T Consensus 155 pGG~lv~d 162 (221)
T 3dr5_A 155 RGGALVLA 162 (221)
T ss_dssp EEEEEEET
T ss_pred CCcEEEEe
Confidence 23455553
No 386
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=28.86 E-value=1.2e+02 Score=30.97 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=54.5
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 33 VRILLC-DNDSNSSDAVFSLLVKCSYQVTSVR--SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 33 irVLIV-DDd~~~r~~L~~lL~~~gyeV~~As--dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
++++++ .+++..++.+.+++.... .|.... ...+...++.. .|+++++- + |+. .+.+ ...+
T Consensus 264 ~~~v~~~g~~~~~~~~l~~~~~~~~-~v~~~~~lg~~~~~~l~~~----ad~vv~~S---G--g~~--~EA~----a~G~ 327 (396)
T 3dzc_A 264 CQILYPVHLNPNVREPVNKLLKGVS-NIVLIEPQQYLPFVYLMDR----AHIILTDS---G--GIQ--EEAP----SLGK 327 (396)
T ss_dssp EEEEEECCBCHHHHHHHHHHTTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESC---S--GGG--TTGG----GGTC
T ss_pred ceEEEEeCCChHHHHHHHHHHcCCC-CEEEeCCCCHHHHHHHHHh----cCEEEECC---c--cHH--HHHH----HcCC
Confidence 455553 444555555555443211 233322 22455555442 47777664 2 322 2222 2678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|+|++-...+.. +.++.|+. ++..+ +.++|...+..++..
T Consensus 328 PvV~~~~~~~~~---e~v~~G~~-~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 328 PVLVMRETTERP---EAVAAGTV-KLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp CEEECCSSCSCH---HHHHHTSE-EECTT-CHHHHHHHHHHHHHC
T ss_pred CEEEccCCCcch---HHHHcCce-EEcCC-CHHHHHHHHHHHHcC
Confidence 999753333322 35677864 66644 789999999888764
No 387
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=28.85 E-value=2.8e+02 Score=25.66 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=54.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHH---HHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHh
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVID---ALNAEGSDIDLILAEVDLPMTKGL-KMLKYITR 102 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe---~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~ 102 (558)
|.++.-.|||..-..-+-..+...|.+.|++|+ ...+...+.+ .+... ...+.++.+++-+.+.+ ++++.+.+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 445556899999999999999999999999987 4455443333 33332 34555655555555444 35566655
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
.. ..+-+|+..+
T Consensus 83 ~~--g~id~li~~A 94 (253)
T 3qiv_A 83 EF--GGIDYLVNNA 94 (253)
T ss_dssp HH--SCCCEEEECC
T ss_pred Hc--CCCCEEEECC
Confidence 43 4566666654
No 388
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=28.57 E-value=2.5e+02 Score=23.53 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
....|.++|.++...+.+.. .++.+.... .-.+.++.+... ..|+||+-.. ....-+.++..++.. ...
T Consensus 28 ~g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~~~~--~~d~vi~~~~-~~~~n~~~~~~a~~~---~~~ 97 (141)
T 3llv_A 28 AGKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSLDLE--GVSAVLITGS-DDEFNLKILKALRSV---SDV 97 (141)
T ss_dssp TTCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHSCCT--TCSEEEECCS-CHHHHHHHHHHHHHH---CCC
T ss_pred CCCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhCCcc--cCCEEEEecC-CHHHHHHHHHHHHHh---CCc
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 110 PVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 110 PVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.||+...... ......++|++..+.
T Consensus 98 ~iia~~~~~~--~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 98 YAIVRVSSPK--KKEEFEEAGANLVVL 122 (141)
T ss_dssp CEEEEESCGG--GHHHHHHTTCSEEEE
T ss_pred eEEEEEcChh--HHHHHHHcCCCEEEC
No 389
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=28.42 E-value=1e+02 Score=29.12 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 47 AVFSLLVKCSYQVTSVRS------PRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 47 ~L~~lL~~~gyeV~~Asd------g~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
.+.+.+.+.||.+..+.. ..+.++.+... .+|-||+--.. ..-+.++.+.. ..+|||++..
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~---~~~~~~~~l~~----~~iPvV~i~~ 97 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETG--SADGVIISKIE---PNDPRVRFMTE----RNMPFVTHGR 97 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHT--CCSEEEEESCC---TTCHHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcC--CccEEEEecCC---CCcHHHHHHhh----CCCCEEEECC
Confidence 344556667998775432 23445555544 68877763211 11256677765 5689998864
No 390
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.41 E-value=1.3e+02 Score=27.84 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
...+.+.+.+.||.+..+. +.. +.++.+... .+|-||+--..+. ..+.++++.. ..+|||++...
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~--~~~~~~~~~~----~~iPvV~~~~~ 91 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRAR--RCDALFVASCLPP--EDDSYRELQD----KGLPVIAIDRR 91 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCCCS--SCCHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCccc--cHHHHHHHHH----cCCCEEEEccC
Confidence 3445566667799876443 222 345555544 7898887543322 2345666665 46899988653
No 391
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=28.30 E-value=1.9e+02 Score=27.15 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+...+.+.||.+..+. +.. +.++.+... .+|-||+--. ..+. .+.++.+.. ..+|||++..
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~~~~ 90 (283)
T 2ioy_A 20 KNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQ--KVDVLLINPV--DSDAVVTAIKEANS----KNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--chhhhHHHHHHHHH----CCCeEEEecC
Confidence 3445556667799877543 232 334445444 7898887321 2222 245666654 4689988853
No 392
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=28.28 E-value=1.8e+02 Score=27.27 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCC-EEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHHhhcCCCCceEEEEe
Q 008655 44 SSDAVFSLLVKCSY-QVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTK-GLKMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 44 ~r~~L~~lL~~~gy-eV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mD-GlElL~~Ir~~~~~~~iPVIVLS 115 (558)
+...+.+.+.+.|| ++..+. +.. +.++.+... .+|.||+--. ..+ ..++++++.. ..+|||++.
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~--~~~~~~~~~~~~~~----~~iPvV~~~ 91 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK--GVKALAINLV--DPAAAGTVIEKARG----QNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--SGGGHHHHHHHHHT----TTCCEEEES
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--CcchhHHHHHHHHH----CCCcEEEec
Confidence 34455666677898 877543 333 345555444 7998887321 122 2356677754 568999886
Q ss_pred cC
Q 008655 116 AQ 117 (558)
Q Consensus 116 a~ 117 (558)
..
T Consensus 92 ~~ 93 (309)
T 2fvy_A 92 KE 93 (309)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 393
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=28.24 E-value=2.2e+02 Score=26.77 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=52.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQR 108 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye--V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~ 108 (558)
..+|..||-++......+..+...|+. |. ...+..+.+..+.. ...+|+|++|... .+-..+++.+.+.- .+
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~--~~~~~~l~~~~~~L--kp 162 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADK--PNNPHYLRWALRYS--RP 162 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCG--GGHHHHHHHHHHTC--CT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCch--HHHHHHHHHHHHhc--CC
Confidence 468999999999999999998877642 43 56777766654421 1279999998743 23345666666532 22
Q ss_pred ceEEEEe
Q 008655 109 IPVIMMS 115 (558)
Q Consensus 109 iPVIVLS 115 (558)
--+|++.
T Consensus 163 GG~lv~~ 169 (248)
T 3tfw_A 163 GTLIIGD 169 (248)
T ss_dssp TCEEEEE
T ss_pred CeEEEEe
Confidence 2355554
No 394
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=28.15 E-value=1e+02 Score=26.73 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=32.0
Q ss_pred CcEEEEEeCCHHH----------HHHHHHHHHhCC--CEEEE-EC---CHHHHHHHHHhc--CCCceEEEEeCC
Q 008655 32 KVRILLCDNDSNS----------SDAVFSLLVKCS--YQVTS-VR---SPRQVIDALNAE--GSDIDLILAEVD 87 (558)
Q Consensus 32 ~irVLIVDDd~~~----------r~~L~~lL~~~g--yeV~~-As---dg~EALe~L~~~--~~~PDLIILDi~ 87 (558)
+.+|+++.|+-.. ...|...|...+ +.|.- +- +..+.+..+... ..+||+|++.+.
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G 75 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELG 75 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEee
Confidence 3478888888754 566777777654 44441 22 233344333220 017899998774
No 395
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=28.09 E-value=1.2e+02 Score=30.53 Aligned_cols=59 Identities=7% Similarity=-0.054 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
...||.+|..- .--..+++++|++.- ...+||++=-+-.+.+.+.+++++||+..+.--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 46899999854 334568999998752 017899888788999999999999999998764
No 396
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=28.07 E-value=2.4e+02 Score=28.15 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCC----------------------C-CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 63 RSPRQVIDALNAEGSDIDLILAEVD----------------------L-PMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 63 sdg~EALe~L~~~~~~PDLIILDi~----------------------M-P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
.+.++|..+. +. ..|.|++.-. + -+...++++.++++.- ..+|||...+-.+
T Consensus 193 ~~~e~a~~~~-~~--G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~--~~ipvia~GGI~~ 267 (332)
T 1vcf_A 193 LSREAALALR-DL--PLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVL--PHLPLVASGGVYT 267 (332)
T ss_dssp CCHHHHHHHT-TS--CCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHC--SSSCEEEESSCCS
T ss_pred CCHHHHHHHH-Hc--CCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhc--CCCeEEEECCCCC
Confidence 5677766443 23 5888877432 1 1235677888887652 3699999999999
Q ss_pred HHHHHHHHHcCCCEE-EeCCCC
Q 008655 120 VSVVVKCLRLGAADY-LVKPLR 140 (558)
Q Consensus 120 ~e~a~eAL~~GA~DY-L~KP~~ 140 (558)
...+.++|.+||+.+ +-.|+-
T Consensus 268 ~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 268 GTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp HHHHHHHHHHTCSEEEECGGGH
T ss_pred HHHHHHHHHhCCChHhhhHHHH
Confidence 999999999999887 555643
No 397
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=28.07 E-value=1.8e+02 Score=29.04 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=56.8
Q ss_pred EEEEEeCCHHH----HHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 34 RILLCDNDSNS----SDAVFSLLVKCS--YQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 34 rVLIVDDd~~~----r~~L~~lL~~~g--yeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
-+||-|++-.+ ...+...-+..+ .-.+.+.+.+++.+.+.. ..|+|.+|-.-| .+-.++++.++... +
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~-~~~~~~v~~l~~~~--~ 240 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAV-WQTQTAVQRRDSRA--P 240 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCH-HHHHHHHHHHHHHC--T
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccC--C
Confidence 46776655433 223333322233 223477899999998864 589999997322 22223455554421 3
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
++ .|..|+--+.+.+.+..+.|++-|.
T Consensus 241 ~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 241 TV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp TC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred Ce-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 33 5667777777788888899987664
No 398
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=28.00 E-value=1.3e+02 Score=31.59 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=30.4
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEeC
Q 008655 32 KVRILLCDNDS---NSSDAVFSLLVKCSYQVTSVR---SP----RQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 32 ~irVLIVDDd~---~~r~~L~~lL~~~gyeV~~As---dg----~EALe~L~~~~~~PDLIILDi 86 (558)
..+|++||-|+ .....+...-...++.|+.+. +. .++++.+... .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 56889999886 222333323333466665443 22 3345554433 689999998
No 399
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=27.99 E-value=1.7e+02 Score=25.11 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEC---CHHHH-HHHHHhcCCC---ceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEE
Q 008655 41 DSNSSDAVFSLLVKCSYQVTSVR---SPRQV-IDALNAEGSD---IDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIM 113 (558)
Q Consensus 41 d~~~r~~L~~lL~~~gyeV~~As---dg~EA-Le~L~~~~~~---PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIV 113 (558)
+......+..++......|.... ....| ..+|... . ++..+.|+.... +|.++.+.|.+......+|+|+
T Consensus 23 ~~~~~~~v~~~i~~~~Vvvy~~~~Cp~C~~a~k~~L~~~--~~~~i~~~~vdvd~~~-~~~~~~~~L~~~~g~~tVP~vf 99 (129)
T 3ctg_A 23 SQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQEL--NVPKSKALVLELDEMS-NGSEIQDALEEISGQKTVPNVY 99 (129)
T ss_dssp CHHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHTTS--CCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEE
T ss_pred cHHHHHHHHHHHcCCCEEEEECCCCCchHHHHHHHHHhc--CccCCCcEEEEccccC-CHHHHHHHHHHHhCCCCCCEEE
Confidence 35567778888876665555433 36677 6777655 4 778888886533 4556555665543347899998
Q ss_pred Eec
Q 008655 114 MSA 116 (558)
Q Consensus 114 LSa 116 (558)
+-+
T Consensus 100 i~g 102 (129)
T 3ctg_A 100 ING 102 (129)
T ss_dssp ETT
T ss_pred ECC
Confidence 754
No 400
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=27.98 E-value=4.2e+02 Score=25.57 Aligned_cols=76 Identities=7% Similarity=0.165 Sum_probs=46.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVK-CSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~-~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPV 111 (558)
+||.|+--.-.+-+.+.+.+.. .++++..+.+..+-++.+... .+| |++|+.-|. ...+.++...+ ..+|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~--~~D-vvIDfT~p~-a~~~~~~~a~~----~g~~~ 72 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDG--NTE-VVIDFTHPD-VVMGNLEFLID----NGIHA 72 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHT--TCC-EEEECSCTT-THHHHHHHHHH----TTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhcc--CCc-EEEEccChH-HHHHHHHHHHH----cCCCE
Confidence 4788888766677777777664 488877443211112222222 588 777888776 45667766655 45788
Q ss_pred EEEec
Q 008655 112 IMMSA 116 (558)
Q Consensus 112 IVLSa 116 (558)
|+-|.
T Consensus 73 VigTT 77 (245)
T 1p9l_A 73 VVGTT 77 (245)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 87554
No 401
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=27.96 E-value=70 Score=31.03 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCEEEEECCHHHH-------HHHHHhcCCCceEEEEe-CCC---CC-----------CCHHHHHHHHHhhc
Q 008655 47 AVFSLLVKCSYQVTSVRSPRQV-------IDALNAEGSDIDLILAE-VDL---PM-----------TKGLKMLKYITRDK 104 (558)
Q Consensus 47 ~L~~lL~~~gyeV~~Asdg~EA-------Le~L~~~~~~PDLIILD-i~M---P~-----------mDGlElL~~Ir~~~ 104 (558)
.|.+.|+..+++|.... ..++ ++.|. .+||||++ +.- .. .+-+++|++.-+
T Consensus 44 ~l~~aL~~~~~~v~~~~-~~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~-- 116 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMP-AHTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK-- 116 (256)
T ss_dssp HHHHHHHHTTCEEEEEC-HHHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHhcCceEEEEe-cccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH--
Confidence 45566666789988763 2211 13333 58998886 321 11 345566666655
Q ss_pred CCCCceEEEEecC
Q 008655 105 ELQRIPVIMMSAQ 117 (558)
Q Consensus 105 ~~~~iPVIVLSa~ 117 (558)
....+|++.+.
T Consensus 117 --~GGgll~igG~ 127 (256)
T 2gk3_A 117 --NGGGLLMIGGY 127 (256)
T ss_dssp --TTCEEEEECST
T ss_pred --hCCEEEEECCh
Confidence 35678888664
No 402
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.92 E-value=1e+02 Score=28.96 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
...+.+.+.+.||.+..+. +.. +.++.+... .+|-||+--... ..++++++.. ..+|||++...
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~---~~~~~~~~~~----~~iPvV~~~~~ 96 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFER--RVDGLILAPSEG---EHDYLRTELP----KTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCSS---CCHHHHHSSC----TTSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEeCCCC---ChHHHHHhhc----cCCCEEEEecc
Confidence 4455666777899877544 222 345555544 789888743322 2245555543 57899988643
No 403
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=27.73 E-value=2e+02 Score=28.54 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCH--------HHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHH
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSP--------RQVIDALNAEGSDIDLILAEVDLPMTKGL-KML 97 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg--------~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL 97 (558)
|.|+.-.|||..-..-+-..+...|.+.|+.|+ .+.+. ++..+.+... ..++.++.+++-+.+.+ +++
T Consensus 1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~ 78 (324)
T 3u9l_A 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAI 78 (324)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHH
Confidence 344555788989999999999999999999987 44431 2222333333 24455555555554443 355
Q ss_pred HHHHhhcCCCCceEEEEec
Q 008655 98 KYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 98 ~~Ir~~~~~~~iPVIVLSa 116 (558)
+.+.+.. ..+-+||-.+
T Consensus 79 ~~~~~~~--g~iD~lVnnA 95 (324)
T 3u9l_A 79 DQIIGED--GRIDVLIHNA 95 (324)
T ss_dssp HHHHHHH--SCCSEEEECC
T ss_pred HHHHHHc--CCCCEEEECC
Confidence 6665432 4566666554
No 404
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=27.72 E-value=1.9e+02 Score=28.40 Aligned_cols=33 Identities=6% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEEEE
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKC-SYQVTSV 62 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~-gyeV~~A 62 (558)
|++.+|||..-.-.+-..|...|.+. |++|...
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~ 55 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM 55 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEE
Confidence 45578999999999998888888776 8887743
No 405
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=27.56 E-value=1.8e+02 Score=29.89 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 66 RQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 66 ~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
.+.++.+.+. .+|+|.+|........ ++.+++|++. .++|||+ ..-.+.+.+..++++||+.+..
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~---~~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSK---MNIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHH---CCCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHh---cCCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 4555555444 6899999876433222 4677888764 3678876 2235677889999999988876
No 406
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=27.55 E-value=1.3e+02 Score=31.22 Aligned_cols=106 Identities=8% Similarity=0.173 Sum_probs=58.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EEC-CHHHHHHHHHhcCCCc-eEE-EEeCCCCCCCHHHHHHHHHhh
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVK-CSYQVT-SVR-SPRQVIDALNAEGSDI-DLI-LAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~-~gyeV~-~As-dg~EALe~L~~~~~~P-DLI-ILDi~MP~mDGlElL~~Ir~~ 103 (558)
.|++++|.||.--..-+..+...|.. .+++++ .+. +.+.+.+.....+... ++. ..|+ +.+-..
T Consensus 80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~-----------~~ll~~ 148 (433)
T 1h6d_A 80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF-----------DKIAKD 148 (433)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSG-----------GGGGGC
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCH-----------HHHhcC
Confidence 46679999999866554234444444 367765 444 4444444433321110 111 1111 122221
Q ss_pred cCCCCceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHHHH
Q 008655 104 KELQRIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLNLW 148 (558)
Q Consensus 104 ~~~~~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~~L 148 (558)
+.+-+|+++... -.+.+..|+++|..=|+.||+. .++....+
T Consensus 149 ---~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~ 194 (433)
T 1h6d_A 149 ---PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMI 194 (433)
T ss_dssp ---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHH
T ss_pred ---CCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHH
Confidence 345666666543 3678889999999999999975 44444433
No 407
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=27.54 E-value=1.7e+02 Score=27.24 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR---SPRQ---VIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As---dg~E---ALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+...||++..+. +... .++.+... .+|-||+.-. ..+. .+.++++.. ..+|||++..
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~i~~ 90 (271)
T 2dri_A 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR--GTKILLINPT--DSDAVGNAVKMANQ----ANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTT--TEEEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--ChHHHHHHHHHHHH----CCCcEEEecC
Confidence 3445556667799877543 3322 34444333 7998887422 2222 245666664 4689998854
No 408
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=27.53 E-value=2e+02 Score=29.12 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=44.9
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 59 VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 59 V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
.+.+.+.+|+.+.+.. ..|+|.+|= |+--++-+.+.... .-..|..|+--+.+.+.+..+.|++-+
T Consensus 211 eVEv~tl~e~~eAl~a---GaDiImLDn----~s~~~l~~av~~~~---~~v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 211 AIECDNISQVEESLSN---NVDMILLDN----MSISEIKKAVDIVN---GKSVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEES----CCHHHHHHHHHHHT---TSSEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHhhc---CceEEEEECCCCHHHHHHHHHcCCCEE
Confidence 3478999999999976 489999994 33333322232221 224677888777778888888888655
No 409
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=27.49 E-value=1.7e+02 Score=30.10 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 45 SDAVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDLP-----MTKGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~MP-----~mDGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
.+.+..+-+..+.-|+ -+.+.++|..++.. ..|.|++.-.-. +..-++++.++++. ..+|||.-.+-
T Consensus 214 ~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~a---Gad~I~vs~~gg~~~d~~~~~~~~l~~v~~~---~~~pVia~GGI 287 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVKGLLSAEDADRCIAE---GADGVILSNHGGRQLDCAISPMEVLAQSVAK---TGKPVLIDSGF 287 (380)
T ss_dssp HHHHHHHHHHCCSEEEEEEECCHHHHHHHHHT---TCSEEEECCGGGTSCTTCCCGGGTHHHHHHH---HCSCEEECSSC
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEcCCCCCcCCCCcCHHHHHHHHHHH---cCCeEEEECCC
Confidence 3455555555554443 46788888887764 488888732100 11236677888764 24588888888
Q ss_pred CCHHHHHHHHHcCCCEEE-eCCC
Q 008655 118 DEVSVVVKCLRLGAADYL-VKPL 139 (558)
Q Consensus 118 ~d~e~a~eAL~~GA~DYL-~KP~ 139 (558)
.+...+.+++.+||+... -+|+
T Consensus 288 ~~~~dv~kal~~GAdaV~iGr~~ 310 (380)
T 1p4c_A 288 RRGSDIVKALALGAEAVLLGRAT 310 (380)
T ss_dssp CSHHHHHHHHHTTCSCEEESHHH
T ss_pred CCHHHHHHHHHhCCcHhhehHHH
Confidence 889999999999998884 4454
No 410
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=27.46 E-value=3e+02 Score=23.68 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=41.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHHHH
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP--LRTNELLNLWTHMWRRR 155 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP--~~~eeL~~~L~~llr~~ 155 (558)
..|++|+- . -+..+++.+. ..+|+|++-...+.....+.+...-..++..+ ++.++|...|..++...
T Consensus 86 ~ad~~I~~---~--G~~t~~Ea~~-----~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 86 KTRAFITH---G--GANGIYEAIY-----HGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp TEEEEEEC---C--CHHHHHHHHH-----HTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred CcCEEEEc---C--CccHHHHHHH-----cCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 56877762 1 2345555554 46799988765554443444444444555555 47889999999887543
No 411
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=27.36 E-value=96 Score=29.57 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=50.7
Q ss_pred HHHHHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHHhhcC--CCCceEEEEe
Q 008655 48 VFSLLVKCSYQVT-SV--RSPRQVIDALNAEGSDIDLILAEVDLPMT-------KGLKMLKYITRDKE--LQRIPVIMMS 115 (558)
Q Consensus 48 L~~lL~~~gyeV~-~A--sdg~EALe~L~~~~~~PDLIILDi~MP~m-------DGlElL~~Ir~~~~--~~~iPVIVLS 115 (558)
+.+.+...|..+. .+ .+..+.++.+.. ..|.|++=--.|+. .+++.+++|++... ...+||.+.-
T Consensus 104 ~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 104 TLCQIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp HHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 3444455676655 33 344555554433 36777655555542 34677777776420 1267888776
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008655 116 AQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~K 137 (558)
+-.. +.+.++.++||+.++.=
T Consensus 181 GI~~-~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 181 GLKP-NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp SCCT-TTTHHHHHHTCCEEEES
T ss_pred CcCH-HHHHHHHHcCCCEEEEC
Confidence 6444 66778889999999764
No 412
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=27.14 E-value=2.2e+02 Score=28.66 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=44.1
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE
Q 008655 60 TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 60 ~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL 135 (558)
+.+.+.+|+.+.+.. .+|+|.+|-. +--+ ++++.+.- ..-..|..|+--+.+.+.+..+.|++-+-
T Consensus 203 VEv~tl~ea~eAl~a---GaD~I~LDn~----~~~~-l~~av~~~--~~~v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 203 VEVTNLDELNQAIAA---KADIVMLDNF----SGED-IDIAVSIA--RGKVALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESC----CHHH-HHHHHHHH--TTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEEcCC----CHHH-HHHHHHhh--cCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 388999999999875 4899999963 3222 33332211 12245667877777788888888986653
No 413
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=26.88 E-value=3.8e+02 Score=24.95 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=50.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~ 106 (558)
.+...+|||..-...+-..+...|.+.|++|+ ...+...+-+...........+.+|+ -+.+.+ ++++.+.+..
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~d~~~v~~~~~~~~~~~-- 84 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDV--TKRASVDAAMQKAIDAL-- 84 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCT--TCHHHHHHHHHHHHHHH--
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeC--CCHHHHHHHHHHHHHHc--
Confidence 34456899999999999999999999999987 45565544443333211233444444 343343 3455555432
Q ss_pred CCceEEEEec
Q 008655 107 QRIPVIMMSA 116 (558)
Q Consensus 107 ~~iPVIVLSa 116 (558)
..+-+||-.+
T Consensus 85 g~iD~lv~~A 94 (263)
T 3ak4_A 85 GGFDLLCANA 94 (263)
T ss_dssp TCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 3456666544
No 414
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=26.82 E-value=1.3e+02 Score=29.75 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=31.6
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 008655 32 KVRILLCDNDSN---SSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG 93 (558)
Q Consensus 32 ~irVLIVDDd~~---~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG 93 (558)
..+|++++-|.. ..+.|.......|..+....++.+....+... ..+|+||+| .++.+.
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCT
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCCh
Confidence 358888888763 22233333333454443334444433333322 269999999 455543
No 415
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=26.81 E-value=2.7e+02 Score=26.30 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHH----HHHhcCCCceEEEEeCCCCCCCHH-HHHHHHH
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVID----ALNAEGSDIDLILAEVDLPMTKGL-KMLKYIT 101 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe----~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir 101 (558)
|.+..-+|||..-..-+-..+...|.+.|++|+ ...+..+..+ .+... ...+.++.+++-+.+.+ ++++++.
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 444456799999999999999999999999887 4443333333 33333 34555555555554443 4566665
Q ss_pred hhcCCCCceEEEEec
Q 008655 102 RDKELQRIPVIMMSA 116 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa 116 (558)
+.. ..+-+||..+
T Consensus 103 ~~~--g~id~li~nA 115 (271)
T 4iin_A 103 QSD--GGLSYLVNNA 115 (271)
T ss_dssp HHH--SSCCEEEECC
T ss_pred Hhc--CCCCEEEECC
Confidence 543 4566666654
No 416
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=26.79 E-value=1.6e+02 Score=26.90 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=47.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~i 109 (558)
..+|||..-...+-..+...|.+.|++|+ ...+....-+..... ....++.+|+ -+.+.+ ++++.+.... ..+
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~--~~~~~~~~~~~~~~~~~--~~i 79 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-EGALPLPGDV--REEGDWARAVAAMEEAF--GEL 79 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCT--TCHHHHHHHHHHHHHHH--SCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hhceEEEecC--CCHHHHHHHHHHHHHHc--CCC
Confidence 34799999999999999999999999987 455554433333322 1234444444 343343 3445554432 345
Q ss_pred eEEEEec
Q 008655 110 PVIMMSA 116 (558)
Q Consensus 110 PVIVLSa 116 (558)
-+|+..+
T Consensus 80 d~li~~A 86 (234)
T 2ehd_A 80 SALVNNA 86 (234)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 5565543
No 417
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=26.74 E-value=4.2e+02 Score=28.18 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC-C--CCCCHHHHHHHHHhhcCCCCceEEEEecCCCH
Q 008655 45 SDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD-L--PMTKGLKMLKYITRDKELQRIPVIMMSAQDEV 120 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~-M--P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~ 120 (558)
...|.....+.|.++. .++|.+|+...+.. .+|+|=+... + -..| ++...+|...- ..++++|.-++-.+.
T Consensus 146 l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~d-l~~~~~L~~~i-p~~~~vIaEsGI~t~ 220 (452)
T 1pii_A 146 YRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSID-LNRTRELAPKL-GHNVTVISESGINTY 220 (452)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEEC-THHHHHHHHHH-CTTSEEEEESCCCCH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCC-HHHHHHHHHhC-CCCCeEEEECCCCCH
Confidence 3444455556798866 88999999888764 4888876541 1 1222 45555554431 135778888888999
Q ss_pred HHHHHHHHcCCCEEEe
Q 008655 121 SVVVKCLRLGAADYLV 136 (558)
Q Consensus 121 e~a~eAL~~GA~DYL~ 136 (558)
+.+.+++++ |+.+|.
T Consensus 221 edv~~~~~~-a~avLV 235 (452)
T 1pii_A 221 AQVRELSHF-ANGFLI 235 (452)
T ss_dssp HHHHHHTTT-CSEEEE
T ss_pred HHHHHHHHh-CCEEEE
Confidence 999999999 999975
No 418
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=26.74 E-value=2.3e+02 Score=27.75 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=53.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVK-CSYQVTSVR-SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~-~gyeV~~As-dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~i 109 (558)
+++|.||.--..-+..+...|.. .++++..+. +.+.+.+..... ....++. +-.++ | . ..+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~--g~~~~~~-------~~~~~---l-~----~~~ 64 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY--RVSATCT-------DYRDV---L-Q----YGV 64 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT--TCCCCCS-------STTGG---G-G----GCC
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHc--CCCcccc-------CHHHH---h-h----cCC
Confidence 47899998765544324444443 467776444 444443333332 1111111 11222 2 1 234
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC--HHHHHH
Q 008655 110 PVIMMSAQD--EVSVVVKCLRLGAADYLVKPLR--TNELLN 146 (558)
Q Consensus 110 PVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~--~eeL~~ 146 (558)
-+|+++... -.+.+..+++.|..=|+.||+. ..+...
T Consensus 65 D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~ 105 (323)
T 1xea_A 65 DAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECEN 105 (323)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHH
T ss_pred CEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHH
Confidence 556665433 3567889999999999999975 444433
No 419
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=26.70 E-value=1.4e+02 Score=30.12 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.4
Q ss_pred eEEEE-eCCCCCCCH-HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 80 DLILA-EVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 80 DLIIL-Di~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
|.|++ |-++--..| -++++++++.. +..+|.+-. ++.+.+.+|+++||+-.+..-+++++|...++.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~--~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~ 238 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLD--SNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSI 238 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHC--TTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhC--CCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHh
Confidence 45555 433332223 35677777653 567777633 455788999999999999999999888776654
No 420
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=26.67 E-value=1.5e+02 Score=28.08 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=49.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQ 107 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~ 107 (558)
++..+|||..-...+-..+...|.+.|++|+ ...+...+.+..........++.+|+ -+.+.+ ++++.+.+.. .
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv--~~~~~~~~~~~~~~~~~--g 78 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDV--TDGERIDVVAADVLARY--G 78 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCT--TCHHHHHHHHHHHHHHH--S
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeC--CCHHHHHHHHHHHHHhC--C
Confidence 3445788889899999999999999999987 44554444444333322334444444 444443 3455554432 4
Q ss_pred CceEEEEec
Q 008655 108 RIPVIMMSA 116 (558)
Q Consensus 108 ~iPVIVLSa 116 (558)
.+-+|+..+
T Consensus 79 ~id~lv~~A 87 (281)
T 3m1a_A 79 RVDVLVNNA 87 (281)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 456666554
No 421
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=26.35 E-value=2.1e+02 Score=27.19 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~As 63 (558)
.+|||..-.-.+-..|...|.+.|++|....
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 4799999999999999998888899887543
No 422
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=26.30 E-value=2.2e+02 Score=30.36 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 65 PRQVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 65 g~EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
..+.++.+.+. .+|+|.+|........ ++++++|++.. +.+||++-.. ...+.+..+.++||+.+..
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34444445444 6999999886543333 58899998863 5788886332 5577888999999987755
No 423
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.19 E-value=1.1e+02 Score=25.35 Aligned_cols=84 Identities=7% Similarity=0.110 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEE--------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 41 DSNSSDAVFSLLVKCSYQVTS--------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 41 d~~~r~~L~~lL~~~gyeV~~--------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++.....+..++......|.. |.....|.++|... ..+....|+.. .-++.+.|+.......+|+|
T Consensus 4 s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~--gi~~~~~dI~~----~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 4 TPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNL--NVPFEDVNILE----NEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp CHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT--TCCCEEEEGGG----CHHHHHHHHHHHTCSSSCEE
T ss_pred CHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHc--CCCcEEEECCC----CHHHHHHHHHHHCCCCCCeE
Confidence 355677788888776655543 23468888888877 44555666642 12444455443234789999
Q ss_pred EEecC--CCHHHHHHHHHcC
Q 008655 113 MMSAQ--DEVSVVVKCLRLG 130 (558)
Q Consensus 113 VLSa~--~d~e~a~eAL~~G 130 (558)
++-+. ...+.+.++.+.|
T Consensus 78 fi~g~~iGG~d~l~~l~~~G 97 (109)
T 3ipz_A 78 YIGGEFFGGCDITLEAFKTG 97 (109)
T ss_dssp EETTEEEECHHHHHHHHHHS
T ss_pred EECCEEEeCHHHHHHHHHcC
Confidence 98763 3444454444443
No 424
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=26.12 E-value=4.2e+02 Score=25.01 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=55.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECC----------HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-H
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VRS----------PRQVIDALNAEGSDIDLILAEVDLPMTKGL-K 95 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~-Asd----------g~EALe~L~~~~~~PDLIILDi~MP~mDGl-E 95 (558)
|+++.-.|||..-..-+-..+...|.+.|+.|+. ..+ .++..+.+... ...+.++-+++-+.+.+ +
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRA 79 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHH
Confidence 3445568999999999999999999999998874 343 34455555444 34566665555565554 4
Q ss_pred HHHHHHhhcCCCCceEEEEec
Q 008655 96 MLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa 116 (558)
+++++.+.. ..+-+||..+
T Consensus 80 ~~~~~~~~~--g~iD~lvnnA 98 (274)
T 3e03_A 80 AVAATVDTF--GGIDILVNNA 98 (274)
T ss_dssp HHHHHHHHH--SCCCEEEECC
T ss_pred HHHHHHHHc--CCCCEEEECC
Confidence 566666543 4566666654
No 425
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=25.87 E-value=1.4e+02 Score=29.00 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=51.1
Q ss_pred cEEEEE-eCCHH---HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 33 VRILLC-DNDSN---SSDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 33 irVLIV-DDd~~---~r~~L~~lL~~~gyeV~---~A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
-+|.|| +|+.. ....+.+.|++.|.+|. .. .+....+..+... .||+|++... ..+...+++.++
T Consensus 160 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~--~~dav~~~~~--~~~a~~~~~~~~ 235 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIAT--KPDAVFIASA--GTPAVLPQKALR 235 (386)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHT--CCSEEEEECC--SGGGHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhc--CCCEEEEecC--cchHHHHHHHHH
Confidence 355444 34443 33445666666677653 22 3556677777655 7999988653 345678888888
Q ss_pred hhcCCCCceEEEEecCCCHHHH
Q 008655 102 RDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e~a 123 (558)
+.. ...|++...+..+.+..
T Consensus 236 ~~g--~~~~~~~~~~~~~~~~~ 255 (386)
T 3sg0_A 236 ERG--FKGAIYQTHGVATEEFI 255 (386)
T ss_dssp HTT--CCSEEECCGGGCSHHHH
T ss_pred HcC--CCCcEEeccccCCHHHH
Confidence 764 34676655555555444
No 426
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=25.78 E-value=2.6e+02 Score=26.75 Aligned_cols=85 Identities=7% Similarity=0.014 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECC----------HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-H
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRS----------PRQVIDALNAEGSDIDLILAEVDLPMTKGL-K 95 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asd----------g~EALe~L~~~~~~PDLIILDi~MP~mDGl-E 95 (558)
|.++.-.|||..-..-+-..+...|.+.|+.|+ ...+ .++..+.+... ...+.++-+++-+.+.+ +
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~ 82 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAA 82 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHH
Confidence 445556899999999999999999999999887 4443 33455555544 34566665555555544 3
Q ss_pred HHHHHHhhcCCCCceEEEEec
Q 008655 96 MLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa 116 (558)
+++++.+.. ..+-+||..+
T Consensus 83 ~~~~~~~~~--g~id~lvnnA 101 (285)
T 3sc4_A 83 AVAKTVEQF--GGIDICVNNA 101 (285)
T ss_dssp HHHHHHHHH--SCCSEEEECC
T ss_pred HHHHHHHHc--CCCCEEEECC
Confidence 566666543 4566776654
No 427
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.77 E-value=2.8e+02 Score=26.20 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+...+.+.||.+..+. +.. +.++.+... .+|.||+.-..+.. -.++++++.+ ..+|||++..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~~~-~~~~~~~~~~----~~iPvV~~~~ 91 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR--GVDVLVIIPYNGQV-LSNVVKEAKQ----EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEEECSSTTS-CHHHHHHHHT----TTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc--CCCEEEEeCCChhh-hHHHHHHHHH----CCCeEEEECC
Confidence 45566677778899877543 232 345555544 78988876433221 1356777764 5789998864
No 428
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=25.60 E-value=2.8e+02 Score=25.58 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=52.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHHHhhcCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY--QVT-SVRSPRQVIDALNAEG--SDIDLILAEVDLPMTKGLKMLKYITRDKEL 106 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy--eV~-~Asdg~EALe~L~~~~--~~PDLIILDi~MP~mDGlElL~~Ir~~~~~ 106 (558)
..+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..+|+|++|... .+-.++++.+...-
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~L-- 172 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLNLL-- 172 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHHTE--
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHHHc--
Confidence 35899999999999888888876664 243 5677877776664321 379999999652 23345566665431
Q ss_pred CCceEEEEe
Q 008655 107 QRIPVIMMS 115 (558)
Q Consensus 107 ~~iPVIVLS 115 (558)
.+--+|++.
T Consensus 173 kpgG~lv~~ 181 (232)
T 3cbg_A 173 RRGGLMVID 181 (232)
T ss_dssp EEEEEEEEE
T ss_pred CCCeEEEEe
Confidence 233455553
No 429
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=25.59 E-value=75 Score=29.03 Aligned_cols=51 Identities=25% Similarity=0.226 Sum_probs=32.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSP---RQVIDALNAEGSDIDLILA 84 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg---~EALe~L~~~~~~PDLIIL 84 (558)
.+|+|||.-..+...+.+.|++.|+++....+. ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 379999966556777888898889887755543 3333433221 13556664
No 430
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=25.44 E-value=2e+02 Score=29.52 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHH
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPLRTN 142 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~~~e 142 (558)
+.++|+++++... ..++.+++--+|. +-++.+++|++. ..+||+.-=...+.....++++.|+.|+ ..|+...-
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 304 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHP-LNSDNMQKVSRS---TTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCS-SCHHHHHHHHHH---CSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 6788988887652 5778888766654 447778888875 4678765444456778889999997776 56776543
Q ss_pred HHHH
Q 008655 143 ELLN 146 (558)
Q Consensus 143 eL~~ 146 (558)
-|..
T Consensus 305 Git~ 308 (410)
T 2gl5_A 305 GITE 308 (410)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 3433
No 431
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=25.15 E-value=2.4e+02 Score=26.50 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCEEEEEC--CHHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVKCSYQVTSVR--SPRQ---VIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~As--dg~E---ALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+.+.+.+.||++..+. +... .++.+... .+|.||+.-.-+. ....+++++.. ..+|||++..
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 90 (306)
T 8abp_A 21 WKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAAS--GAKGFVICTPDPK-LGSAIVAKARG----YDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHT--TCCEEEEECSCGG-GHHHHHHHHHH----TTCEEEEESS
T ss_pred HHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCch-hhHHHHHHHHH----CCCcEEEeCC
Confidence 3445556666799876443 4433 34444444 6898887542221 23345667765 5789998874
No 432
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.93 E-value=2.1e+02 Score=28.60 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=47.6
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 33 VRILLCDNDSN----SSDAVFSLLVKCSYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 33 irVLIVDDd~~----~r~~L~~lL~~~gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
-+|.||-++.. ....+.+.+.+.|.+|.. ..+....+..+... .||+|++....+ .+...+++.++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~--~~d~v~~~~~~~-~~~~~~~~~~~ 241 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRAD--PPAVIVVTHFYP-QDQALFMNQFM 241 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHS--CCSEEEECCCCH-HHHHHHHHHHT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhc--CCCEEEEccccC-chHHHHHHHHH
Confidence 45555544443 344555666667877652 13567777777765 799999863221 23566777777
Q ss_pred hhcCCCCceEEEEecCCCHH
Q 008655 102 RDKELQRIPVIMMSAQDEVS 121 (558)
Q Consensus 102 ~~~~~~~iPVIVLSa~~d~e 121 (558)
+.. ...+++...+....+
T Consensus 242 ~~g--~~~~~~~~~~~~~~~ 259 (419)
T 3h5l_A 242 TDP--TNSLVYLQYGASLAA 259 (419)
T ss_dssp TSC--CSCEEEECSGGGSHH
T ss_pred HcC--CCceEEecCCCCcHH
Confidence 643 234444333344443
No 433
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=24.86 E-value=1.7e+02 Score=28.45 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=45.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-----CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC--H---HHHHHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKC-----SYQV-TSVRSPRQVIDALNAEGSDIDLILAEVDLPMTK--G---LKMLKYI 100 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~-----gyeV-~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mD--G---lElL~~I 100 (558)
..+|..||-++.+.+..++.+... .-+| +...|+.+.+... ...+|+||+|.-.|... . .++++.+
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~ 178 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKI 178 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTTTGGGGGSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 368999999999998888877542 1123 2567777765442 23799999998655321 1 3667766
Q ss_pred Hhh
Q 008655 101 TRD 103 (558)
Q Consensus 101 r~~ 103 (558)
++.
T Consensus 179 ~~~ 181 (283)
T 2i7c_A 179 YNA 181 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 434
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=24.82 E-value=1.3e+02 Score=29.32 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=46.1
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 008655 34 RILLC-DNDSN---SSDAVFSLLVKCSYQVT---SV----RSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITR 102 (558)
Q Consensus 34 rVLIV-DDd~~---~r~~L~~lL~~~gyeV~---~A----sdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~ 102 (558)
+|.|| +|+.. ....+.+.|.+.|.+|. .. .+....+..+... .||+|++... ..+...+++.+++
T Consensus 143 ~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~~~ 218 (364)
T 3lop_A 143 RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAA--DVQAIFLGAT--AEPAAQFVRQYRA 218 (364)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHS--CCSEEEEESC--HHHHHHHHHHHHH
T ss_pred eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhC--CCCEEEEecC--cHHHHHHHHHHHH
Confidence 44443 44443 33455666777776532 22 2566777777665 7999998542 3356778888887
Q ss_pred hcCCCCceEEEEecCC
Q 008655 103 DKELQRIPVIMMSAQD 118 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~ 118 (558)
.. ..+|||......
T Consensus 219 ~g--~~~~~i~~~~~~ 232 (364)
T 3lop_A 219 RG--GEAQLLGLSSID 232 (364)
T ss_dssp TT--CCCEEEECTTSC
T ss_pred cC--CCCeEEEeccCC
Confidence 54 456765433333
No 435
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=24.77 E-value=1.1e+02 Score=31.06 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCH
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADY-LVKPLRT 141 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DY-L~KP~~~ 141 (558)
+.++|+++++... ..++ +++--++ -++.+++|++. ..+||+.-=...+.....++++.|+.|+ ..|+...
T Consensus 201 ~~~~a~~~~~~l~-~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 201 RVDNAIRLARATR-DLDY-ILEQPCR---SYEECQQVRRV---ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp CHHHHHHHHHHTT-TSCC-EEECCSS---SHHHHHHHHTT---CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred CHHHHHHHHHHHH-hCCe-EEeCCcC---CHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 5788888877652 5667 7665555 57777888764 4678775445566788889999886665 6778653
No 436
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.75 E-value=2.6e+02 Score=27.09 Aligned_cols=65 Identities=8% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHHhhcCCCCceEEEEecC
Q 008655 46 DAVFSLLVKCSYQVTSVR---SPRQ---VIDALNAEGSDIDLILAEVDLPMT-KGLKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg~E---ALe~L~~~~~~PDLIILDi~MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
..+.+.+.+.||.+.... +... .++.+......+|.||+- |.. ...++++++.. ..+|||++...
T Consensus 24 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~---~~~~~~~~~~~~~~~----~giPvV~~~~~ 95 (350)
T 3h75_A 24 QFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLV---NEQYVAPQILRLSQG----SGIKLFIVNSP 95 (350)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEE---CCSSHHHHHHHHHTT----SCCEEEEEESC
T ss_pred HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEe---CchhhHHHHHHHHHh----CCCcEEEEcCC
Confidence 445555566799876443 3322 333333310279988884 322 23456666654 57899988753
No 437
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=24.74 E-value=89 Score=28.24 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=39.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPM 90 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~ 90 (558)
++|||..-.-.+-..|...|.+.|++|. ...+...+. .+... ...++..|+.-+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~~~~--~~~~~~~D~~d~~ 56 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA-DRLGA--TVATLVKEPLVLT 56 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHTCT--TSEEEECCGGGCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc-cccCC--CceEEeccccccc
Confidence 3699999999999999999988899987 555655443 33222 5777877876444
No 438
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=24.73 E-value=2.4e+02 Score=27.37 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHHHHHHh-CCCEEEE------E--CCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHHhhcCCCCceEE
Q 008655 45 SDAVFSLLVK-CSYQVTS------V--RSPRQVIDALNAEGSDIDLILAEVDLPM---TKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 45 r~~L~~lL~~-~gyeV~~------A--sdg~EALe~L~~~~~~PDLIILDi~MP~---mDGlElL~~Ir~~~~~~~iPVI 112 (558)
...+++++.. .+..|+. + .|..+|++.|... .++=|++.=.-+. .+|++.|+++.+.. ..-..|
T Consensus 106 ~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~l--Gv~rILTSG~~~~~~a~~g~~~L~~Lv~~a--~~ri~I 181 (224)
T 2bdq_A 106 TEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVAL--GFTRILLHGSSNGEPIIENIKHIKALVEYA--NNRIEI 181 (224)
T ss_dssp HHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHT--TCCEEEECSCSSCCCGGGGHHHHHHHHHHH--TTSSEE
T ss_pred HHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHc--CCCEEECCCCCCCCcHHHHHHHHHHHHHhh--CCCeEE
Confidence 3444455543 2555543 5 7889999999887 6888888755544 78999999997643 222445
Q ss_pred EEecCCCHHHHHHHH-HcCCCEEEe
Q 008655 113 MMSAQDEVSVVVKCL-RLGAADYLV 136 (558)
Q Consensus 113 VLSa~~d~e~a~eAL-~~GA~DYL~ 136 (558)
|.-+--..+.+.+.+ ..|+..|-.
T Consensus 182 m~GgGV~~~Ni~~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 182 MVGGGVTAENYQYICQETGVKQAHG 206 (224)
T ss_dssp EECSSCCTTTHHHHHHHHTCCEEEE
T ss_pred EeCCCCCHHHHHHHHHhhCCCEEcc
Confidence 554433333344444 578888843
No 439
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=24.72 E-value=4e+02 Score=27.13 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=47.2
Q ss_pred HHHHhCCCEEEE-EC--CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 50 SLLVKCSYQVTS-VR--SPRQVIDALNAEGSDIDLILAEVDL-------PMTKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 50 ~lL~~~gyeV~~-As--dg~EALe~L~~~~~~PDLIILDi~M-------P~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
+.++..++.+.. .. +..+..+.+... ..|+|.++..- |.. .++.+.++++. ..+|||+ -.-.+
T Consensus 149 ~~~~~~g~~v~~~v~~~~~~e~a~~~~~a--gad~i~i~~~~~~~~~~~~~~-~~~~i~~l~~~---~~~pvi~-ggi~t 221 (393)
T 2qr6_A 149 AQVRDSGEIVAVRVSPQNVREIAPIVIKA--GADLLVIQGTLISAEHVNTGG-EALNLKEFIGS---LDVPVIA-GGVND 221 (393)
T ss_dssp HHHHHTTSCCEEEECTTTHHHHHHHHHHT--TCSEEEEECSSCCSSCCCC------CHHHHHHH---CSSCEEE-ECCCS
T ss_pred HHHhhcCCeEEEEeCCccHHHHHHHHHHC--CCCEEEEeCCccccccCCCcc-cHHHHHHHHHh---cCCCEEE-CCcCC
Confidence 334445665442 22 234434444333 58998887421 111 33446777765 4789887 44456
Q ss_pred HHHHHHHHHcCCCEEEe
Q 008655 120 VSVVVKCLRLGAADYLV 136 (558)
Q Consensus 120 ~e~a~eAL~~GA~DYL~ 136 (558)
.+.+..++++||+.+..
T Consensus 222 ~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 222 YTTALHMMRTGAVGIIV 238 (393)
T ss_dssp HHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 78899999999998877
No 440
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=24.70 E-value=3.8e+02 Score=30.67 Aligned_cols=107 Identities=8% Similarity=0.204 Sum_probs=70.4
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 008655 33 VRILLCDNDS----------NSSDAVFSLLVKCSY--QVTSVR---S---PRQVIDALNAEGSDIDLILAEVDLPMTKGL 94 (558)
Q Consensus 33 irVLIVDDd~----------~~r~~L~~lL~~~gy--eV~~As---d---g~EALe~L~~~~~~PDLIILDi~MP~mDGl 94 (558)
++++||.+.+ .....+..++.+.+. .|.... + ..+....+.. ..|++++--. -..-|+
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~-~Egfgl 679 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPAL-YEAFGL 679 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCS-CBSSCH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCC-ccCccH
Confidence 6788888776 255667777777664 344433 2 2455555543 2477776432 244577
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 152 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ll 152 (558)
.+++.+. ..+|||.. .... ..+.+..|..+++..|.+.++|...|..++
T Consensus 680 vllEAMA-----~G~PVIas-d~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL 728 (816)
T 3s28_A 680 TVVEAMT-----CGLPTFAT-CKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFF 728 (816)
T ss_dssp HHHHHHH-----TTCCEEEE-SSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHH-----cCCCEEEe-CCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHH
Confidence 7877775 57898863 3333 345567788999999999999999887665
No 441
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=24.64 E-value=3.2e+02 Score=27.05 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHHh-CCCEEEE------ECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 45 SDAVFSLLVK-CSYQVTS------VRSPRQVIDALNAEGSDIDLILAEVDLP-MTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 45 r~~L~~lL~~-~gyeV~~------Asdg~EALe~L~~~~~~PDLIILDi~MP-~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
...+..++.. .+..|+. +.|..+|++.|... .++=|++.=.-+ -.+|++.|++|.+.. . -..||.-+
T Consensus 103 ~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~l--G~~rILTSG~~~~a~~g~~~L~~Lv~~a--~-~i~Im~Gg 177 (256)
T 1twd_A 103 MPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAEL--GIARVLTSGQKSDALQGLSKIMELIAHR--D-APIIMAGA 177 (256)
T ss_dssp HHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHH--TCCEEEECTTSSSTTTTHHHHHHHHTSS--S-CCEEEEES
T ss_pred HHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhh--C-CcEEEecC
Confidence 3444555543 3566653 67899999999887 688777764433 478999999998653 2 23444443
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 008655 117 QDEVSVVVKCLRLGAADYL 135 (558)
Q Consensus 117 ~~d~e~a~eAL~~GA~DYL 135 (558)
--..+.+.+.+..|+..|-
T Consensus 178 Gv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 178 GVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp SCCTTTHHHHHHHTCSEEE
T ss_pred CcCHHHHHHHHHcCCCeEe
Confidence 3333333344478888775
No 442
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.40 E-value=3.8e+02 Score=23.95 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=22.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE
Q 008655 34 RILLCDNDSNSSDAVFSLLVKCSYQVT 60 (558)
Q Consensus 34 rVLIVDDd~~~r~~L~~lL~~~gyeV~ 60 (558)
+|||..-.-.+-..|...|.+.|++|.
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~ 28 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIY 28 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 788888888888888888888788776
No 443
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=24.37 E-value=3e+02 Score=25.89 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=6.6
Q ss_pred HHHHHHHHcCCCEEE
Q 008655 121 SVVVKCLRLGAADYL 135 (558)
Q Consensus 121 e~a~eAL~~GA~DYL 135 (558)
+...++++.|++.++
T Consensus 219 ~~~~~l~~~GvdgI~ 233 (247)
T 2otd_A 219 QHAAELLRWGVDCIC 233 (247)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 334444444444443
No 444
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=24.27 E-value=1e+02 Score=29.45 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=52.7
Q ss_pred CCcCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHh
Q 008655 25 DGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITR 102 (558)
Q Consensus 25 ~~~m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~ 102 (558)
.+.|++..-+|||..-..-+-..+...|.+.|++|+ ...+...+.+.+... ....+.+|+. +.+.+ ++++.+.+
T Consensus 20 ~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~Dv~--~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 20 QGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA--GAVALYGDFS--CETGIMAFIDLLKT 95 (260)
T ss_dssp -------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH--TCEEEECCTT--SHHHHHHHHHHHHH
T ss_pred ccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc--CCeEEECCCC--CHHHHHHHHHHHHH
Confidence 445666667899999999999999999999999877 555655555655544 3455555553 43333 35566655
Q ss_pred hcCCCCceEEEEec
Q 008655 103 DKELQRIPVIMMSA 116 (558)
Q Consensus 103 ~~~~~~iPVIVLSa 116 (558)
.. ..+-+||..+
T Consensus 96 ~~--g~iD~lv~nA 107 (260)
T 3gem_A 96 QT--SSLRAVVHNA 107 (260)
T ss_dssp HC--SCCSEEEECC
T ss_pred hc--CCCCEEEECC
Confidence 42 4566666654
No 445
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=24.26 E-value=3.8e+02 Score=24.92 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=51.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKEL 106 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~ 106 (558)
+.+.-.|||..-..-+-..+...|.+.|++|+ ...+...+.+..... ...+..+.+++-+.+.+ ++++++.+..
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-- 81 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL--GDNGKGMALNVTNPESIEAVLKAITDEF-- 81 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cccceEEEEeCCCHHHHHHHHHHHHHHc--
Confidence 34455789999999999999999999999987 445554443333332 12233333444444443 3566665543
Q ss_pred CCceEEEEec
Q 008655 107 QRIPVIMMSA 116 (558)
Q Consensus 107 ~~iPVIVLSa 116 (558)
..+-+|+-.+
T Consensus 82 g~iD~lv~nA 91 (248)
T 3op4_A 82 GGVDILVNNA 91 (248)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4566666654
No 446
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=24.26 E-value=3.2e+02 Score=25.32 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=51.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCH-HHHHHHHHhcCCCceEEEEeCCCCCC-CHH-HHHHHHHhh
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQ-VT-SVRSP-RQVIDALNAEGSDIDLILAEVDLPMT-KGL-KMLKYITRD 103 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gye-V~-~Asdg-~EALe~L~~~~~~PDLIILDi~MP~m-DGl-ElL~~Ir~~ 103 (558)
+++..+|||..-...+-..+...|.+.|+. |+ ...+. .+.++.+........+.++.+++-+. +.+ ++++.+.+.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence 345568999999999999999999999985 65 44443 24555554321123454444444444 333 455666543
Q ss_pred cCCCCceEEEEec
Q 008655 104 KELQRIPVIMMSA 116 (558)
Q Consensus 104 ~~~~~iPVIVLSa 116 (558)
. ..+-+||..+
T Consensus 82 ~--g~id~lv~~A 92 (254)
T 1sby_A 82 L--KTVDILINGA 92 (254)
T ss_dssp H--SCCCEEEECC
T ss_pred c--CCCCEEEECC
Confidence 2 3456666654
No 447
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=24.19 E-value=1.4e+02 Score=27.37 Aligned_cols=64 Identities=2% Similarity=-0.070 Sum_probs=43.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye--V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
..+|..||-++...+..++.+...+.. |. ...+..+.+.. . ..+|+|+++..+ +-. +++.+.+.
T Consensus 77 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~-~~~D~v~~~~~~---~~~-~l~~~~~~ 143 (204)
T 3njr_A 77 GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD---L-PLPEAVFIGGGG---SQA-LYDRLWEW 143 (204)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT---S-CCCSEEEECSCC---CHH-HHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc---C-CCCCEEEECCcc---cHH-HHHHHHHh
Confidence 568999999999999888888776643 43 44565553322 1 269999988743 433 67776653
No 448
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=24.17 E-value=71 Score=25.29 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCccchhhhhhhhccCCC-ccceeeec
Q 008655 492 DKKIRYVNRKRLAERRPR-VRGQFVRK 517 (558)
Q Consensus 492 ~k~i~y~~rk~~a~~r~r-~~g~f~~~ 517 (558)
.|+.-++||-..|-.||| -.|||...
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~ 62 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTA 62 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccC
Confidence 455679999999999999 78999764
No 449
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=24.09 E-value=2.3e+02 Score=23.96 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=44.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHH
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYIT 101 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir 101 (558)
.+|..||-++......+..+...+..+. ...+..+.+..+......+|+|+++.-.. .+--++++.+.
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 3599999999999888888776654433 44567665554433222699999995332 23335566665
No 450
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=24.07 E-value=3.7e+02 Score=23.59 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008655 94 LKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLR 140 (558)
Q Consensus 94 lElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~ 140 (558)
.++++++++ ..++++++|+.........+-.+|..+|+.....
T Consensus 41 ~~~l~~L~~----~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~ 83 (180)
T 1k1e_A 41 GLGIKMLMD----ADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLE 83 (180)
T ss_dssp HHHHHHHHH----TTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSC
T ss_pred HHHHHHHHH----CCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCC
Confidence 478888886 4679999999877666556667888888765433
No 451
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=23.89 E-value=4.5e+02 Score=25.62 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=50.3
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 008655 32 KVRILLCDNDSN----SSDAVFSLLVKC--SYQVTS-------VRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (558)
Q Consensus 32 ~irVLIVDDd~~----~r~~L~~lL~~~--gyeV~~-------Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~ 98 (558)
.-+|.||-++.. ....+.+.|... |.+|.. ..+....+..+... .||+|++... +.+...+++
T Consensus 142 ~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~--~~d~v~~~~~--~~~~~~~~~ 217 (387)
T 3i45_A 142 ITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQA--EPEGLFNVLF--GADLPKFVR 217 (387)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHT--CCSEEEECCC--TTHHHHHHH
T ss_pred CCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhC--CCCEEEEcCc--cHHHHHHHH
Confidence 346666644332 334566666666 776542 13567777777665 7999998753 446778888
Q ss_pred HHHhhcCCCCceEEEEec
Q 008655 99 YITRDKELQRIPVIMMSA 116 (558)
Q Consensus 99 ~Ir~~~~~~~iPVIVLSa 116 (558)
.+++......++|+-.+.
T Consensus 218 ~~~~~g~~~~~~i~~~~~ 235 (387)
T 3i45_A 218 EGRVRGLFAGRQVVSMLT 235 (387)
T ss_dssp HHHHHTSSTTCEEEEEEE
T ss_pred HHHHcCCCCCCeEEeecC
Confidence 888765334566665443
No 452
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=23.85 E-value=3.1e+02 Score=25.77 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=49.5
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----------HHHHHHHHhhcCCCCceEEEEecC
Q 008655 50 SLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKG-----------LKMLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 50 ~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDG-----------lElL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
....+.|..++ ++.+..+...+ ... .+++|-..-...-..| -+.++.++... ..+||+.-.+-
T Consensus 105 ~~a~~~Gl~~iv~v~~~~e~~~~-~~~--~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~--~~~~ii~ggGI 179 (219)
T 2h6r_A 105 NKCKNLGLETIVCTNNINTSKAV-AAL--SPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEIN--KDVKVLCGAGI 179 (219)
T ss_dssp HHHHHHTCEEEEEESSSHHHHHH-TTT--CCSEEEECCCC--------------CSHHHHHHHHHHC--TTCEEEECSSC
T ss_pred HHHHHCCCeEEEEeCCchHHHHH-HhC--CCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhcc--CCCeEEEEeCc
Confidence 33345588765 66666654433 222 4677665443320022 23455565542 36888888888
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008655 118 DEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 118 ~d~e~a~eAL~~GA~DYL~ 136 (558)
...+.+..+...||+.+|.
T Consensus 180 ~~~~~~~~~~~~gaDgvlV 198 (219)
T 2h6r_A 180 SKGEDVKAALDLGAEGVLL 198 (219)
T ss_dssp CSHHHHHHHHTTTCCCEEE
T ss_pred CcHHHHHHHhhCCCCEEEE
Confidence 8888888899999999975
No 453
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=23.84 E-value=2.5e+02 Score=25.86 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHH---HHHHhcC-CCceEEEEeCCCCCCCHH-HHHHHHHhh
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVI---DALNAEG-SDIDLILAEVDLPMTKGL-KMLKYITRD 103 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EAL---e~L~~~~-~~PDLIILDi~MP~mDGl-ElL~~Ir~~ 103 (558)
++.-.|||..-...+-..+...|.+.|+.|+ ...+...+- +.+.... ....++.+|+.....+.+ ++++.+.+.
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 3445789999999999999999999999987 455544332 3333321 234566667665665544 355666554
Q ss_pred cCCCCceEEEEec
Q 008655 104 KELQRIPVIMMSA 116 (558)
Q Consensus 104 ~~~~~iPVIVLSa 116 (558)
. ..+-+||..+
T Consensus 92 ~--g~id~lv~nA 102 (247)
T 3i1j_A 92 F--GRLDGLLHNA 102 (247)
T ss_dssp H--SCCSEEEECC
T ss_pred C--CCCCEEEECC
Confidence 3 4566666654
No 454
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.79 E-value=2.1e+02 Score=26.55 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCEEEEEC-----CHH---HHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR-----SPR---QVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As-----dg~---EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+...+.+.||++.... +.. +.++.+... .+|.||+--..+ +. .+.++++.. ..+|||++..
T Consensus 27 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~--~~~~~~~~~~~~----~~iPvV~~~~ 98 (289)
T 3brs_A 27 EGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKR--KPDVILLAAADY--EKTYDAAKEIKD----AGIKLIVIDS 98 (289)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHT--CCSEEEECCSCT--TTTHHHHTTTGG----GTCEEEEESS
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh--CCCEEEEeCCCh--HHhHHHHHHHHH----CCCcEEEECC
Confidence 344556666799877542 333 345555544 789888743222 22 244555543 4689988864
No 455
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=23.78 E-value=1.2e+02 Score=31.23 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=51.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE-eCC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL-VKP 138 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL-~KP 138 (558)
+..+|+++++.. ...++..+.--++..+.++.+++|++. ..+||..==...+.....++++.|+.|++ .|+
T Consensus 221 ~~~~A~~~~~~l-~~~~~~~iEeP~~~~~d~~~~~~l~~~---~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~ 292 (388)
T 4h83_A 221 KPAVAVDLSRRI-ADLNIRWFEEPVEWHNDKRSMRDVRYQ---GSVPVCAGQTEFSASGCRDLMETGAIDVCNFDS 292 (388)
T ss_dssp CHHHHHHHHHHT-TTSCCCCEESCBCSTTHHHHHHHHHHH---SSSCEEECTTCSSHHHHHHHHHHTCCSEECCCG
T ss_pred CHHHHHHHHHHh-hhcCcceeecCcccccchHHHHHHHhh---cCCCccCCccccChHhHHHHHHcCCCCeEeecc
Confidence 789999998775 367887777766666778888889875 46776421123456778899999999997 444
No 456
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.78 E-value=4.6e+02 Score=24.65 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHHhhcCCCCceEEEEec
Q 008655 46 DAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKG-LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 46 ~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDG-lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
..+...+.+.||++..+. +.. +.++.+... .+|-||+--..+ +. .+.++.+.. ..+|||++..
T Consensus 22 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~~~--~~~~~~~~~~~~----~~iPvV~~~~ 91 (306)
T 2vk2_A 22 NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQ--GVDAIFIAPVVA--TGWEPVLKEAKD----AEIPVFLLDR 91 (306)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHH--TCSEEEECCSSS--SSCHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCh--hhHHHHHHHHHH----CCCCEEEecC
Confidence 445566677799877543 333 345555444 689888743221 22 356666664 4689998864
No 457
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=23.73 E-value=1.4e+02 Score=29.51 Aligned_cols=100 Identities=7% Similarity=0.048 Sum_probs=66.5
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----CC-CCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 008655 47 AVFSLLVKCSYQVT--SVRSPRQVIDALNAEGSDIDLILAEVDL----PM-TKGLKMLKYITRDKELQRIPVIMMSAQDE 119 (558)
Q Consensus 47 ~L~~lL~~~gyeV~--~Asdg~EALe~L~~~~~~PDLIILDi~M----P~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d 119 (558)
.....|+..|+.+. -+.+|...+..|... ++|.|=+|-.+ .. .....+++.|........+. ||.-+-++
T Consensus 167 ~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l--~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~-vvAEGVEt 243 (294)
T 2r6o_A 167 TCLDALRARGVRLALDDFGTGYSSLSYLSQL--PFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGME-VVAEGIET 243 (294)
T ss_dssp HHHHHHHHHTCEEEEEEETSSCBCHHHHHHS--CCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCE-EEECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCE-EEEecCCc
Confidence 34455667788764 777888888888776 89999999532 21 12334555554332123444 44567778
Q ss_pred HHHHHHHHHcCCCEE----EeCCCCHHHHHHHHH
Q 008655 120 VSVVVKCLRLGAADY----LVKPLRTNELLNLWT 149 (558)
Q Consensus 120 ~e~a~eAL~~GA~DY----L~KP~~~eeL~~~L~ 149 (558)
.+....+.++|++-+ +.||...+++...+.
T Consensus 244 ~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~ 277 (294)
T 2r6o_A 244 AQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLD 277 (294)
T ss_dssp HHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHH
Confidence 888888889998653 889999988876543
No 458
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=23.65 E-value=3.9e+02 Score=27.22 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCC
Q 008655 34 RILLCDNDSNSS----DAVFSLLVKCSY-Q-VTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQ 107 (558)
Q Consensus 34 rVLIVDDd~~~r----~~L~~lL~~~gy-e-V~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~ 107 (558)
.|||-|.+-.+. ..+...-+..+. . ++.+.+.+++.+.+.. .+|+|.+|- |+- +.++++.+.- .
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn----~~~-~~l~~av~~l--~ 273 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDN----FSL-EMMREAVKIN--A 273 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEES----CCH-HHHHHHHHHH--T
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECC----CCH-HHHHHHHHHh--C
Confidence 467776653322 233333222332 2 3488999999998875 589999996 343 3334433321 1
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCEE
Q 008655 108 RIPVIMMSAQDEVSVVVKCLRLGAADY 134 (558)
Q Consensus 108 ~iPVIVLSa~~d~e~a~eAL~~GA~DY 134 (558)
.-..|..|+--+.+.+.+..+.|++-|
T Consensus 274 ~~v~ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 274 GRAALENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp TSSEEEEESSCCHHHHHHHHTTTCSEE
T ss_pred CCCeEEEECCCCHHHHHHHHHcCCCEE
Confidence 224566888888888989999999555
No 459
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=23.61 E-value=1.2e+02 Score=38.47 Aligned_cols=84 Identities=8% Similarity=-0.050 Sum_probs=55.5
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHH---HHhcCCCceEEE---Ee-CCCCCCC--------HHHHHHHHHhhcCCCCceE
Q 008655 48 VFSLLVKCSYQVT-SVRSPRQVIDA---LNAEGSDIDLIL---AE-VDLPMTK--------GLKMLKYITRDKELQRIPV 111 (558)
Q Consensus 48 L~~lL~~~gyeV~-~Asdg~EALe~---L~~~~~~PDLII---LD-i~MP~mD--------GlElL~~Ir~~~~~~~iPV 111 (558)
+.++|+..|..++ .+.+..+|++. +.+. .+|+|+ +. .+-.+-. -+.++.+|++. .++||
T Consensus 684 ~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~a--G~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~---~~ipv 758 (2060)
T 2uva_G 684 ANEYIQTLGIRHISFKPGSVDAIQQVINIAKA--NPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKC---SNIVL 758 (2060)
T ss_dssp HHHHHHHSCCSEEEECCCSHHHHHHHHHHHHH--CTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTS---TTEEE
T ss_pred HHHHHHHcCCeEEEecCCHHHHHHHHHHHHHc--CCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHH---cCCCE
Confidence 4556666676554 55566666655 1223 488777 32 1111222 25677777763 57899
Q ss_pred EEEecCCCHHHHHHHH-----------HcCCCEEEe
Q 008655 112 IMMSAQDEVSVVVKCL-----------RLGAADYLV 136 (558)
Q Consensus 112 IVLSa~~d~e~a~eAL-----------~~GA~DYL~ 136 (558)
|+-.+-.+...+..+| .+||+....
T Consensus 759 iaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~ 794 (2060)
T 2uva_G 759 VAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMF 794 (2060)
T ss_dssp EEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEE
T ss_pred EEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEE
Confidence 9888999999999999 999998754
No 460
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=23.60 E-value=1.3e+02 Score=30.73 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=47.7
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 008655 33 VRILLCDNDSN-----SSDAVFSLLVKCSYQVTSVR---------SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLK 98 (558)
Q Consensus 33 irVLIVDDd~~-----~r~~L~~lL~~~gyeV~~As---------dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~ 98 (558)
-++|||-|... ....+...|...|+++..+. +..++++.+.+. ++|+||- +-|..-+++.+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND--SFDFVVG---LGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS--CCSEEEE---EESHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHH
Confidence 48888887733 34667778887787654332 245556666544 7898872 23445566666
Q ss_pred HHHhhcCC---------------CCceEEEEec
Q 008655 99 YITRDKEL---------------QRIPVIMMSA 116 (558)
Q Consensus 99 ~Ir~~~~~---------------~~iPVIVLSa 116 (558)
.+...... +.+|+|.+-+
T Consensus 116 ~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371)
T 1o2d_A 116 AVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371)
T ss_dssp HHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred HHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC
Confidence 55543221 5678887643
No 461
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=23.59 E-value=4.2e+02 Score=24.59 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=49.3
Q ss_pred CCCcEEEEEeCC--HHHHHHHHHHHHhCCCEEEEE-CCH--HHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhh
Q 008655 30 RSKVRILLCDND--SNSSDAVFSLLVKCSYQVTSV-RSP--RQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRD 103 (558)
Q Consensus 30 m~~irVLIVDDd--~~~r~~L~~lL~~~gyeV~~A-sdg--~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~ 103 (558)
++.-+|||..-. .-+-..+...|.+.|++|+.. .+. .+.++.+........+.++-+++-+.+.+ ++++++.+.
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 344578888887 448888999898889998744 332 23444433321122445554555555554 356666654
Q ss_pred cCCCCceEEEEec
Q 008655 104 KELQRIPVIMMSA 116 (558)
Q Consensus 104 ~~~~~iPVIVLSa 116 (558)
. ..+-+|+..+
T Consensus 85 ~--g~id~li~~A 95 (266)
T 3oig_A 85 V--GVIHGIAHCI 95 (266)
T ss_dssp H--SCCCEEEECC
T ss_pred h--CCeeEEEEcc
Confidence 3 4455666554
No 462
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=23.57 E-value=3.4e+02 Score=25.72 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~ 136 (558)
++++.+++ ..++|.+.|- .+.+.+.++++.|++.+++
T Consensus 201 ~~v~~~~~----~G~~v~~WTv-n~~~~~~~l~~~GVdgIiT 237 (252)
T 3qvq_A 201 QQVSDIKA----AGYKVLAFTI-NDESLALKLYNQGLDAVFS 237 (252)
T ss_dssp HHHHHHHH----TTCEEEEECC-CCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH----CCCEEEEEcC-CCHHHHHHHHHcCCCEEEe
Confidence 45555554 4567777764 5677788899999999887
No 463
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=23.52 E-value=1.7e+02 Score=28.40 Aligned_cols=49 Identities=12% Similarity=0.358 Sum_probs=33.4
Q ss_pred CcEEEEEeCCHHHH--------------HHHHHHHHhCCCEEEEEC--CHHHHH--HHHHhcCCCceEEEE
Q 008655 32 KVRILLCDNDSNSS--------------DAVFSLLVKCSYQVTSVR--SPRQVI--DALNAEGSDIDLILA 84 (558)
Q Consensus 32 ~irVLIVDDd~~~r--------------~~L~~lL~~~gyeV~~As--dg~EAL--e~L~~~~~~PDLIIL 84 (558)
.+||||..+-.--+ ..|.++|+..||+|..+. +....+ +.|. .+||||+
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~----~~DvvV~ 73 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD----RCDVLVW 73 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH----TCSEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh----cCCEEEE
Confidence 58999998754322 256888988999998755 554333 3333 5899997
No 464
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=23.48 E-value=54 Score=32.85 Aligned_cols=93 Identities=14% Similarity=0.220 Sum_probs=57.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEE
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVI 112 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVI 112 (558)
++|.||-....-.+.+.+.|.+.|++|.......+.+ . .+|+||.= |.|| .+|...+.... . +|||
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-----~--~~DlvIvl----GGDG-T~L~aa~~~~~-~-~Pil 95 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-----E--NFDFIVSV----GGDG-TILRILQKLKR-C-PPIF 95 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-----G--GSSEEEEE----ECHH-HHHHHHTTCSS-C-CCEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-----C--CCCEEEEE----CCCH-HHHHHHHHhCC-C-CcEE
Confidence 3687775322116678888999999987655432222 1 47887753 5677 35555554321 2 8999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 113 MMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 113 VLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
=+.. |-..||. ++..+++...+..++.
T Consensus 96 GIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 96 GINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 7764 4556665 4666677777777765
No 465
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=23.44 E-value=3.1e+02 Score=27.07 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=59.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCC---------HHHHHHHHHh
Q 008655 35 ILLCDNDSNSSDAVFSLLVKCSYQVT-SVR--SPRQVIDALNAEGSDIDLILAEVDLPMTK---------GLKMLKYITR 102 (558)
Q Consensus 35 VLIVDDd~~~r~~L~~lL~~~gyeV~-~As--dg~EALe~L~~~~~~PDLIILDi~MP~mD---------GlElL~~Ir~ 102 (558)
|+|.|=...-...+...+...|..++ .+. +..+-++.+.+. ..+.|-+ +.+.+.. -.+++++|++
T Consensus 129 vIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--~~gfiY~-vs~~GvTG~~~~~~~~~~~~v~~vr~ 205 (271)
T 3nav_A 129 VLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQL--GKGYTYL-LSRAGVTGAETKANMPVHALLERLQQ 205 (271)
T ss_dssp EEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHH--CCSCEEE-CCCC--------CCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHH--CCCeEEE-EeccCCCCcccCCchhHHHHHHHHHH
Confidence 34444444445567777778887643 333 334555555544 3444443 1222222 2467888886
Q ss_pred hcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008655 103 DKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP 138 (558)
. ..+||++=-+-.+.+.+.+++..||+..+.-.
T Consensus 206 ~---~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 206 F---DAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp T---TCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred h---cCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 4 46898875566678888889999999998753
No 466
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.34 E-value=2.7e+02 Score=26.93 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 43 NSSDAVFSLLVKCSYQVTSVR---SP---RQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 43 ~~r~~L~~lL~~~gyeV~~As---dg---~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
.+...+...+.+.||.+..+. +. .+.++.+... .+|-||+--..... ++++.+.. ..+|||++..
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiIi~~~~~~~---~~~~~l~~----~~iPvV~~~~ 149 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQH--RPDGVLITGLSHAE---PFERILSQ----HALPVVYMMD 149 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTT--CCSEEEEECSCCCT---THHHHHHH----TTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcC--CCCEEEEeCCCCCH---HHHHHHhc----CCCCEEEEee
Confidence 355667777788899987544 23 2344555444 78877764321111 45566654 4689998853
No 467
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=23.26 E-value=4.3e+02 Score=24.12 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=47.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCc-eEEEEeCCCCCCCHH-HHHHHHHhhcCC
Q 008655 30 RSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDI-DLILAEVDLPMTKGL-KMLKYITRDKEL 106 (558)
Q Consensus 30 m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~P-DLIILDi~MP~mDGl-ElL~~Ir~~~~~ 106 (558)
+..-+|||..-...+-..+...|.+.|++|+ ...+....-+.....+... .++.+|+ -+.+.+ ++++.+.+ .
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~~~-~-- 83 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADV--TDAEAMTAAAAEAEA-V-- 83 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCT--TCHHHHHHHHHHHHH-H--
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEec--CCHHHHHHHHHHHHh-h--
Confidence 4456899999999999999999999999987 4555544333332221112 3344454 343333 23444443 2
Q ss_pred CCceEEEEec
Q 008655 107 QRIPVIMMSA 116 (558)
Q Consensus 107 ~~iPVIVLSa 116 (558)
..+-+|+..+
T Consensus 84 ~~id~li~~A 93 (254)
T 2wsb_A 84 APVSILVNSA 93 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCCcEEEECC
Confidence 3455666554
No 468
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=23.25 E-value=3e+02 Score=25.52 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=49.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-EC-CHHHH---HHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHH
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTS-VR-SPRQV---IDALNAEGSDIDLILAEVDLPMTKGL-KMLKYIT 101 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~-As-dg~EA---Le~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir 101 (558)
|.++..+|||..-...+-..+...|.+.|++|+. .. +...+ .+.+... ...+.++..++-+.+.+ ++++.+.
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 94 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAV 94 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4455668999999999999999999999999874 44 43332 2233332 23454544444444443 3445554
Q ss_pred hhcCCCCceEEEEe
Q 008655 102 RDKELQRIPVIMMS 115 (558)
Q Consensus 102 ~~~~~~~iPVIVLS 115 (558)
... ..+-+|+..
T Consensus 95 ~~~--~~~d~vi~~ 106 (274)
T 1ja9_A 95 SHF--GGLDFVMSN 106 (274)
T ss_dssp HHH--SCEEEEECC
T ss_pred HHc--CCCCEEEEC
Confidence 432 344455443
No 469
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=22.79 E-value=1.9e+02 Score=29.19 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-CHHHHHHHHHhhcCCCCceEEEEecCCCH-----------
Q 008655 56 SYQVT-SVRSPRQVIDALNAEGSDIDLILAEVD--LPMT-KGLKMLKYITRDKELQRIPVIMMSAQDEV----------- 120 (558)
Q Consensus 56 gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~--MP~m-DGlElL~~Ir~~~~~~~iPVIVLSa~~d~----------- 120 (558)
.+.+. ++.+.+.++...+.. .|-|=++-. .++. .+..+++.+++. ..+||.++.-....
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gG---AdRIELc~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~ 112 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGG---ADRIELCSGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEV 112 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHT---CSEEEECBCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhC---CCEEEECCCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHH
Confidence 34444 678888888887654 455555443 4443 478899999864 56999988754332
Q ss_pred --HHHHHHHHcCCCEEEeCC
Q 008655 121 --SVVVKCLRLGAADYLVKP 138 (558)
Q Consensus 121 --e~a~eAL~~GA~DYL~KP 138 (558)
+.+..+.++||+.++.--
T Consensus 113 M~~dI~~~~~~GAdGvVfG~ 132 (287)
T 3iwp_A 113 MKADIRLAKLYGADGLVFGA 132 (287)
T ss_dssp HHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEee
Confidence 467888999999997764
No 470
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=22.77 E-value=2.2e+02 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR 63 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As 63 (558)
+.+|||+.....-+. +...+.+.|++|+.+.
T Consensus 19 ~~~ili~g~g~~g~~-~~~a~~~~G~~v~~v~ 49 (433)
T 2dwc_A 19 AQKILLLGSGELGKE-IAIEAQRLGVEVVAVD 49 (433)
T ss_dssp CCEEEEESCSHHHHH-HHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCHHHHH-HHHHHHHCCCEEEEEE
Confidence 468999988765444 4555667899887544
No 471
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=22.76 E-value=64 Score=31.68 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCcEEEEEeCC--------HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC
Q 008655 31 SKVRILLCDND--------SNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVD 87 (558)
Q Consensus 31 ~~irVLIVDDd--------~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~ 87 (558)
++.+|+|+-.- -.....+.+.|.+.||+|.........+..+... ++|+|+.-++
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~--~~D~v~~~~h 74 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDE--GFVRAFNALH 74 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHT--TCCEEEECCC
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhc--CCCEEEEcCC
Confidence 35688888751 1234667778888899998777443323444444 7899987554
No 472
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=22.74 E-value=3.1e+02 Score=25.20 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=47.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc------------C-CCceEEEEeCCCCCCCHHH
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAE------------G-SDIDLILAEVDLPMTKGLK 95 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye--V~-~Asdg~EALe~L~~~------------~-~~PDLIILDi~MP~mDGlE 95 (558)
..+|..||-++......+..+...|+. |. ...+..+.+..+... . ..+|+|++|...+. -.+
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--HHH
Confidence 358999999999999999988877642 43 567777766544321 1 27999999965432 335
Q ss_pred HHHHHHh
Q 008655 96 MLKYITR 102 (558)
Q Consensus 96 lL~~Ir~ 102 (558)
+++.+.+
T Consensus 163 ~l~~~~~ 169 (239)
T 2hnk_A 163 YYPLILK 169 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666654
No 473
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=22.70 E-value=2.6e+02 Score=25.32 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=47.4
Q ss_pred HHHHHHHHHhCCCEEEE-EC---CHHHHHHHHHhcCCCceEE-EEeCCC---CCCCHH-HHHHHHHhhcCCCCceEEEEe
Q 008655 45 SDAVFSLLVKCSYQVTS-VR---SPRQVIDALNAEGSDIDLI-LAEVDL---PMTKGL-KMLKYITRDKELQRIPVIMMS 115 (558)
Q Consensus 45 r~~L~~lL~~~gyeV~~-As---dg~EALe~L~~~~~~PDLI-ILDi~M---P~mDGl-ElL~~Ir~~~~~~~iPVIVLS 115 (558)
...+.+.+.+.|..+.. .. +..+.++.+... ..|+| +.=... ++.+.. +.++++... ++||++.-
T Consensus 92 ~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~----~~pi~v~G 165 (207)
T 3ajx_A 92 IAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA----RVPFSVAG 165 (207)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEEECCHHHHTSTTCCTHHHHHHHHHH----TSCEEEES
T ss_pred HHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEEEecccccccCCCchHHHHHHhhCC----CCCEEEEC
Confidence 33445555555666643 32 666645555443 47887 431111 222222 555555431 56777665
Q ss_pred cCCCHHHHHHHHHcCCCEEEe
Q 008655 116 AQDEVSVVVKCLRLGAADYLV 136 (558)
Q Consensus 116 a~~d~e~a~eAL~~GA~DYL~ 136 (558)
+-. .+.+.+++++||+.++.
T Consensus 166 GI~-~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 166 GVK-VATIPAVQKAGAEVAVA 185 (207)
T ss_dssp SCC-GGGHHHHHHTTCSEEEE
T ss_pred CcC-HHHHHHHHHcCCCEEEE
Confidence 544 56788899999998853
No 474
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=22.66 E-value=2.6e+02 Score=28.48 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEE-eCCCCHH
Q 008655 64 SPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYL-VKPLRTN 142 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL-~KP~~~e 142 (558)
+..+|++.++... ..++.+++--+|.- -++.+++|++. ..+||+.-=...+.....++++.|+.|++ .|+...-
T Consensus 209 ~~~~a~~~~~~l~-~~~i~~iEqP~~~~-d~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 283 (372)
T 3tj4_A 209 DLPTCQRFCAAAK-DLDIYWFEEPLWYD-DVTSHARLARN---TSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLG 283 (372)
T ss_dssp CHHHHHHHHHHTT-TSCEEEEESCSCTT-CHHHHHHHHHH---CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHHh-hcCCCEEECCCCch-hHHHHHHHHhh---cCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccC
Confidence 6788888887753 56888887666643 37777888875 46787643344567788889999987764 6776544
Q ss_pred HHHH
Q 008655 143 ELLN 146 (558)
Q Consensus 143 eL~~ 146 (558)
-|..
T Consensus 284 Git~ 287 (372)
T 3tj4_A 284 GITE 287 (372)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 4433
No 475
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=22.64 E-value=2e+02 Score=28.39 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=29.1
Q ss_pred CceEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHH
Q 008655 108 RIPVIMMSAQD--EVSVVVKCLRLGAADYLVKPLRT--NELLNLWTH 150 (558)
Q Consensus 108 ~iPVIVLSa~~--d~e~a~eAL~~GA~DYL~KP~~~--eeL~~~L~~ 150 (558)
.+-+|++.... -.+.+.+|+++|..=|+-||+.. ++..+.++.
T Consensus 67 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 113 (337)
T 3ip3_A 67 KPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSV 113 (337)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 34455555433 35678999999999999999853 455544443
No 476
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=22.60 E-value=2e+02 Score=29.20 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSY---QVT-SVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gy---eV~-~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
.+|+-||-++........-+...++ .+. ...|..+.+..+......+|+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 5899999999999999888877776 454 67788887765543223799999984
No 477
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.60 E-value=2.1e+02 Score=25.61 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=39.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHH---HHHHHHHh
Q 008655 28 IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMT--KGL---KMLKYITR 102 (558)
Q Consensus 28 m~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi~MP~m--DGl---ElL~~Ir~ 102 (558)
|.++++||+++-|-=.-...+ +..++.+... ++|+||+-=++-.. ..- ++++.|.+
T Consensus 1 ~~~~~mri~~iSD~H~~~~~~-----------------~~~~~~~~~~--~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~ 61 (228)
T 1uf3_A 1 MRRTVRYILATSNPMGDLEAL-----------------EKFVKLAPDT--GADAIALIGNLMPKAAKSRDYAAFFRILSE 61 (228)
T ss_dssp CCCCCCEEEEEECCTTCHHHH-----------------HHHHTHHHHH--TCSEEEEESCSSCTTCCHHHHHHHHHHHGG
T ss_pred CccceEEEEEEeeccCCHHHH-----------------HHHHHHHhhc--CCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Confidence 334467999988875433222 2334444444 68988884333322 222 35666653
Q ss_pred hcCCCCceEEEEecCCC
Q 008655 103 DKELQRIPVIMMSAQDE 119 (558)
Q Consensus 103 ~~~~~~iPVIVLSa~~d 119 (558)
..+||+++.+.-+
T Consensus 62 ----~~~pv~~v~GNHD 74 (228)
T 1uf3_A 62 ----AHLPTAYVPGPQD 74 (228)
T ss_dssp ----GCSCEEEECCTTS
T ss_pred ----cCCcEEEECCCCC
Confidence 3468998888665
No 478
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.59 E-value=2.3e+02 Score=27.94 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=32.4
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEeC
Q 008655 32 KVRILLCDNDS---NSSDAVFSLLVKCSYQVTSVR---SPR----QVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 32 ~irVLIVDDd~---~~r~~L~~lL~~~gyeV~~As---dg~----EALe~L~~~~~~PDLIILDi 86 (558)
..+|+++|-|. .....|..+....++.+.... ++. ++++.+... .+|+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 45899999883 334444444445566665432 333 445555433 689999998
No 479
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=22.48 E-value=1.9e+02 Score=26.31 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=42.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEeCCCCC
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQ--VT-SVRSPRQVIDALNAE--GSDIDLILAEVDLPM 90 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gye--V~-~Asdg~EALe~L~~~--~~~PDLIILDi~MP~ 90 (558)
..+|.-||-++......++.+...+.. |. ...+..+.+..+... ...+|+|++|.....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~ 146 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR 146 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc
Confidence 468999999999999999888876642 43 667777766554320 026999999975443
No 480
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=22.47 E-value=3.3e+02 Score=25.48 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=41.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVR-------SPRQVIDALNAEGSDIDLILAEVDLP 89 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~As-------dg~EALe~L~~~~~~PDLIILDi~MP 89 (558)
...+|||..-.-.+-..|...|.+.|++|.... +.....+.+... .+|+||.-....
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~--~~d~vih~A~~~ 74 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEK--KPNVVINCAAHT 74 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHH--CCSEEEECCCCC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhc--CCCEEEECCccC
Confidence 357999999999999999999988899987543 344444444433 589998766543
No 481
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=22.47 E-value=2.8e+02 Score=24.82 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=41.9
Q ss_pred CcEEEEEeCCHHH-H------------HHHHHHHHh---CCCEEE-EECCH---HHHHHHHHh---cCCCceEEEEeCCC
Q 008655 32 KVRILLCDNDSNS-S------------DAVFSLLVK---CSYQVT-SVRSP---RQVIDALNA---EGSDIDLILAEVDL 88 (558)
Q Consensus 32 ~irVLIVDDd~~~-r------------~~L~~lL~~---~gyeV~-~Asdg---~EALe~L~~---~~~~PDLIILDi~M 88 (558)
.-+|+++.|+-.. - ..+...|.. .++.|. .+-+| ...+..+.. ...+||+|++-+..
T Consensus 3 ~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 82 (240)
T 3mil_A 3 YEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILPEILKHESNIVMATIFLGA 82 (240)
T ss_dssp CEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEECTTCCHHHHHHHHHHHHHHCCCEEEEEEECCT
T ss_pred cccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCcCcccHHHHHHHHHHHhcccCCCCEEEEEeec
Confidence 3478888888765 1 013334432 245655 33333 344433321 11379999997754
Q ss_pred CCC--------CH-------HHHHHHHHhhcCCCCceEEEEec
Q 008655 89 PMT--------KG-------LKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 89 P~m--------DG-------lElL~~Ir~~~~~~~iPVIVLSa 116 (558)
-+. +- .++++.|++. ...||+++.
T Consensus 83 ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~----~~~vil~~~ 121 (240)
T 3mil_A 83 NDACSAGPQSVPLPEFIDNIRQMVSLMKSY----HIRPIIIGP 121 (240)
T ss_dssp TTTSSSSTTCCCHHHHHHHHHHHHHHHHHT----TCEEEEECC
T ss_pred CcCCccCCCCCCHHHHHHHHHHHHHHHHHc----CCeEEEEcC
Confidence 443 11 1245555542 457777775
No 482
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=22.46 E-value=2.2e+02 Score=26.58 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=23.9
Q ss_pred HHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 70 DALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 70 e~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
|.+.+. +|||||..... ..-+..++|.+ ..+||+++..
T Consensus 53 E~i~~l--~PDLIi~~~~~---~~~~~~~~L~~----~gipvv~~~~ 90 (256)
T 2r7a_A 53 EGILSL--RPDSVITWQDA---GPQIVLDQLRA----QKVNVVTLPR 90 (256)
T ss_dssp HHHHTT--CCSEEEEETTC---SCHHHHHHHHH----TTCEEEEECC
T ss_pred HHHHcc--CCCEEEEcCCC---CCHHHHHHHHH----cCCcEEEecC
Confidence 444444 79999986432 12456677765 4578988864
No 483
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=22.44 E-value=1.2e+02 Score=27.27 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=44.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhh
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSY-QVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRD 103 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gy-eV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~ 103 (558)
..+|..||-++......++.+...+. .+. ...+..+.+..+ ..+|+|+++..+. +-.++++.+.+.
T Consensus 64 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~D~i~~~~~~~--~~~~~l~~~~~~ 131 (204)
T 3e05_A 64 NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL----PDPDRVFIGGSGG--MLEEIIDAVDRR 131 (204)
T ss_dssp TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS----CCCSEEEESCCTT--CHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC----CCCCEEEECCCCc--CHHHHHHHHHHh
Confidence 36899999999999988888876553 232 344443333221 2699999987655 555677777654
No 484
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=22.44 E-value=2.2e+02 Score=29.19 Aligned_cols=77 Identities=9% Similarity=0.086 Sum_probs=50.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKC---------------SYQ-VT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLK 95 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~---------------gye-V~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGlE 95 (558)
.+|+.+|-++...+.+++-++.. +.. |. ...|..+.+..+ ...+|+|++|- |+ ...+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~~-~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--FG-SPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--SS-CCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--CC-CHHH
Confidence 57999999999999999888766 643 43 567777766543 12699999884 33 3356
Q ss_pred HHHHHHhhcCCCCceEEEEecC
Q 008655 96 MLKYITRDKELQRIPVIMMSAQ 117 (558)
Q Consensus 96 lL~~Ir~~~~~~~iPVIVLSa~ 117 (558)
+++...+.- .+--+|++|..
T Consensus 146 ~l~~a~~~l--k~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSA--KRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHE--EEEEEEEEEEC
T ss_pred HHHHHHHhc--CCCCEEEEEee
Confidence 666554321 22236767653
No 485
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=22.29 E-value=2.5e+02 Score=26.05 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=50.2
Q ss_pred CCcEEEEEeCC--HHHHHHHHHHHHhCCCEEEEE-CC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhc
Q 008655 31 SKVRILLCDND--SNSSDAVFSLLVKCSYQVTSV-RS--PRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDK 104 (558)
Q Consensus 31 ~~irVLIVDDd--~~~r~~L~~lL~~~gyeV~~A-sd--g~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~ 104 (558)
..-+|||..-. .-+-..+...|.+.|+.|+.+ .+ ..+.++.+........++.+| +-+.+.+ .+++.+.+..
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D--v~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCD--VADDAQIDALFASLKTHW 90 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECC--TTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECC--CCCHHHHHHHHHHHHHHc
Confidence 45688888866 888889999999999988754 33 345555554332233444444 4454444 3566666542
Q ss_pred CCCCceEEEEec
Q 008655 105 ELQRIPVIMMSA 116 (558)
Q Consensus 105 ~~~~iPVIVLSa 116 (558)
..+-+||..+
T Consensus 91 --g~id~lv~nA 100 (271)
T 3ek2_A 91 --DSLDGLVHSI 100 (271)
T ss_dssp --SCEEEEEECC
T ss_pred --CCCCEEEECC
Confidence 4566666554
No 486
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.24 E-value=1e+02 Score=30.21 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHHhhcC--CCCceEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 78 DIDLILAEVDLPMTKG-------LKMLKYITRDKE--LQRIPVIMMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 78 ~PDLIILDi~MP~mDG-------lElL~~Ir~~~~--~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
.+|.|++=---|+..| ++-+++|++... ..+++|. +.+--+.+.+.++.++||+-++.=
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~-VDGGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLE-IDGGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEE-EESSCCTTTHHHHHTTTCCEEEES
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEE-EECCcCHHHHHHHHHcCCCEEEEe
Confidence 3676664333466555 455555554210 1234444 454444667889999999998763
No 487
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=22.09 E-value=2.3e+02 Score=28.75 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008655 95 KMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 150 (558)
Q Consensus 95 ElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~ 150 (558)
++++++++.. +..+|.|-.. +.+.+.+|+++||+-.+.--++++++...+..
T Consensus 196 ~Av~~ar~~~--p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~ 247 (300)
T 3l0g_A 196 LAIQRLRKNL--KNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDI 247 (300)
T ss_dssp HHHHHHHHHS--SSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 5677777654 5678777554 46889999999999999999999888877654
No 488
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=22.03 E-value=2.5e+02 Score=26.15 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CC-CCHHHHHHHHHhhcCCCCceEEEEecCCCH-HHHHHHHHcCCCEEEeC
Q 008655 64 SPRQVIDALNAEGSDIDLILAEV---DL-PM-TKGLKMLKYITRDKELQRIPVIMMSAQDEV-SVVVKCLRLGAADYLVK 137 (558)
Q Consensus 64 dg~EALe~L~~~~~~PDLIILDi---~M-P~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~-e~a~eAL~~GA~DYL~K 137 (558)
+..+.++.+.+. ..|+|=+++ .. |. ..|++++++|++. .+.|+.+..-..+. ..+..+.++||+.....
T Consensus 24 ~~~~~i~~~~~~--G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~---~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh 98 (230)
T 1rpx_A 24 KLGEQVKAIEQA--GCDWIHVDVMDGRFVPNITIGPLVVDSLRPI---TDLPLDVHLMIVEPDQRVPDFIKAGADIVSVH 98 (230)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHGGG---CCSCEEEEEESSSHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHC--CCCEEEEeeccCCcccccccCHHHHHHHHhc---cCCcEEEEEEecCHHHHHHHHHHcCCCEEEEE
Confidence 344555555443 345544442 11 22 2468999999874 24455444333333 46778899999988665
Q ss_pred CC
Q 008655 138 PL 139 (558)
Q Consensus 138 P~ 139 (558)
..
T Consensus 99 ~~ 100 (230)
T 1rpx_A 99 CE 100 (230)
T ss_dssp CS
T ss_pred ec
Confidence 55
No 489
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=22.00 E-value=1.3e+02 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHH
Q 008655 70 DALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVV 123 (558)
Q Consensus 70 e~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a 123 (558)
|.+.+. +|||||..... ..-++.++|.+ ..+||+++......+..
T Consensus 53 E~i~~l--~PDLIi~~~~~---~~~~~~~~L~~----~gipvv~~~~~~~~~~~ 97 (283)
T 2r79_A 53 EGVLAL--RPDILIGTEEM---GPPPVLKQLEG----AGVRVETLSAKPDLEAL 97 (283)
T ss_dssp HHHHTT--CCSEEEECTTC---CCHHHHHHHHH----TTCCEEECCCCSSHHHH
T ss_pred HHHHhc--CCCEEEEeCcc---CcHHHHHHHHH----cCCcEEEecCCCCHHHH
Confidence 444444 79999986432 12456667765 35788887543343333
No 490
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.95 E-value=2.8e+02 Score=26.09 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=51.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CC------------HH---HHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVTSV-RS------------PR---QVIDALNAEGSDIDLILAEVDLPMTKGL 94 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~A-sd------------g~---EALe~L~~~~~~PDLIILDi~MP~mDGl 94 (558)
..-.|||..-..-+-..+...|.+.|+.|+.+ .+ .+ ++...+... ...+.++.+++-+.+.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHHH
Confidence 34578999999999999999999999998754 22 22 233333333 34566665555555554
Q ss_pred -HHHHHHHhhcCCCCceEEEEec
Q 008655 95 -KMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 95 -ElL~~Ir~~~~~~~iPVIVLSa 116 (558)
++++++.+.. ..+-+||..+
T Consensus 87 ~~~~~~~~~~~--g~id~lv~nA 107 (287)
T 3pxx_A 87 SRELANAVAEF--GKLDVVVANA 107 (287)
T ss_dssp HHHHHHHHHHH--SCCCEEEECC
T ss_pred HHHHHHHHHHc--CCCCEEEECC
Confidence 4566665543 4566666654
No 491
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=21.89 E-value=2.3e+02 Score=24.70 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
+....+|.++..... ..+|...+..+..+.+..+++.+|... +.|+++++.
T Consensus 109 dL~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~ 159 (228)
T 2pyy_A 109 DLPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDA 159 (228)
T ss_dssp GCTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred HcCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecH
Confidence 344567877776652 334555688888999999999999876 899999983
No 492
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=21.84 E-value=97 Score=28.48 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=39.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCc-eEEEEeCC
Q 008655 29 DRSKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDI-DLILAEVD 87 (558)
Q Consensus 29 ~m~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~P-DLIILDi~ 87 (558)
.++..+|||..-.-.+-..|...|.+.|++|. ...+... ++.+... .. .++..|+.
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~-~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ-GPELRER--GASDIVVANLE 75 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHT--TCSEEEECCTT
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH-HHHHHhC--CCceEEEcccH
Confidence 34557899999999999999999988899987 4455443 3334333 46 77777876
No 493
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.84 E-value=3.5e+02 Score=22.58 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC
Q 008655 31 SKVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVR 63 (558)
Q Consensus 31 ~~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~As 63 (558)
++.+|+|+......+..+..+....+|++. .+.
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d 36 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFID 36 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEE
Confidence 356899999998887766665554588876 444
No 494
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=21.83 E-value=99 Score=28.94 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=33.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008655 78 DIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCL-RLGAADYLVKPLRTNELLNLWTHMWR 153 (558)
Q Consensus 78 ~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL-~~GA~DYL~KP~~~eeL~~~L~~llr 153 (558)
+|||||..-. ...-+..++|.+. .+|++++.. ...+...+.+ .+|. .+-|+-..+++...++..+.
T Consensus 57 ~PDLIi~~~~---~~~~~~~~~L~~~----gipvv~~~~-~~~~~~~~~i~~lg~--~lg~~~~A~~~~~~~~~~~~ 123 (245)
T 1n2z_A 57 KPDLVIAWRG---GNAERQVDQLASL----GIKVMWVDA-TSIEQIANALRQLAP--WSPQPDKAEQAAQSLLDQYA 123 (245)
T ss_dssp CCSEEEECTT---TSCHHHHHHHHHH----TCCEEECCC-CSHHHHHHHHHHHGG--GCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC---CCcHHHHHHHHHC----CCcEEEeCC-CCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHH
Confidence 7999998421 1123566677653 478887753 3333333333 2231 12234344555555554443
No 495
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=21.81 E-value=1.7e+02 Score=29.51 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=46.2
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHH-cCCCEEE
Q 008655 62 VRSPRQVIDALNAEGSDIDLILAEVDLPM-TKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLR-LGAADYL 135 (558)
Q Consensus 62 Asdg~EALe~L~~~~~~PDLIILDi~MP~-mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~-~GA~DYL 135 (558)
+.+..+|++.+... .+|-||+-=.-|. .+|++.|+++.+.. ...++|++-.+ -+.+.+.+.++ .|+..|-
T Consensus 165 ~~d~~~Ale~Li~l--GvdrILTSG~~~~a~~Gl~~Lk~Lv~~a-~~rI~ImaGGG-V~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 165 VHDPMAALETLLTL--GFERVLTSGCDSSALEGLPLIKRLIEQA-KGRIVVMPGGG-ITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp CSCHHHHHHHHHHH--TCSEEEECTTSSSTTTTHHHHHHHHHHH-TTSSEEEECTT-CCTTTHHHHHHHHCCSEEE
T ss_pred cCCHHHHHHHHHHc--CCCEEECCCCCCChHHhHHHHHHHHHHh-CCCCEEEECCC-cCHHHHHHHHHhhCCCEEe
Confidence 34789999999886 6899998765553 68999999997653 13344444333 23333444444 7887774
No 496
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.79 E-value=3.2e+02 Score=25.03 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEec
Q 008655 44 SSDAVFSLLVKCSYQVTSVR---SPR---QVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSA 116 (558)
Q Consensus 44 ~r~~L~~lL~~~gyeV~~As---dg~---EALe~L~~~~~~PDLIILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa 116 (558)
+...+.+.+.+.||.+..+. +.. +.++.+... .+|-||+--.. .+ -+.++.+.. ..+|||++..
T Consensus 21 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~--~~-~~~~~~l~~----~~iPvV~~~~ 90 (275)
T 3d8u_A 21 FLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLES--RPAGVVLFGSE--HS-QRTHQLLEA----SNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTS--CCCCEEEESSC--CC-HHHHHHHHH----HTCCEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhc--CCCEEEEeCCC--CC-HHHHHHHHh----CCCCEEEEee
Confidence 33455666777899876332 332 345555544 68866654221 12 256667764 3679998854
No 497
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=21.78 E-value=99 Score=32.16 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=63.1
Q ss_pred cCCCCCcEEEEEeC--CHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------hcCCCceEE
Q 008655 27 FIDRSKVRILLCDN--DSNS---SDAVFSLLVKCSYQVTSVRSPRQVIDALN-------------------AEGSDIDLI 82 (558)
Q Consensus 27 ~m~m~~irVLIVDD--d~~~---r~~L~~lL~~~gyeV~~Asdg~EALe~L~-------------------~~~~~PDLI 82 (558)
.+....-+|+||-- ++.+ ...|.+.|...|++|+.-....+.+.... .....+|+|
T Consensus 33 ~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlv 112 (365)
T 3pfn_A 33 TWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFI 112 (365)
T ss_dssp EESSCCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEE
T ss_pred ccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEE
Confidence 34445568999963 3334 34456666677999886554444332221 011246777
Q ss_pred EEeCCCCCCCHHHHHHHHHhhcCCCCceEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008655 83 LAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 154 (558)
Q Consensus 83 ILDi~MP~mDGlElL~~Ir~~~~~~~iPVIVLSa~~d~e~a~eAL~~GA~DYL~KP~~~eeL~~~L~~llr~ 154 (558)
|+= |.||. +|...+... ...+|||=+.. |-.+||. ++..+++...+..+++.
T Consensus 113 I~l----GGDGT-~L~aa~~~~-~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 113 ICL----GGDGT-LLYASSLFQ-GSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEG 164 (365)
T ss_dssp EEE----SSTTH-HHHHHHHCS-SSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHS
T ss_pred EEE----cChHH-HHHHHHHhc-cCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcC
Confidence 653 66773 444444321 24678886653 6666777 67777888888877754
No 498
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=21.63 E-value=83 Score=31.22 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCceEE--EEecCCCHHHHHHHHHcCCCEEEeC
Q 008655 93 GLKMLKYITRDKELQRIPVI--MMSAQDEVSVVVKCLRLGAADYLVK 137 (558)
Q Consensus 93 GlElL~~Ir~~~~~~~iPVI--VLSa~~d~e~a~eAL~~GA~DYL~K 137 (558)
++++++++++. ..+||| ...+-.+.+.+.+++.+||+.++.=
T Consensus 195 ~~~~i~~i~~~---~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKD---GKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 46778888764 468888 4455667888999999999988554
No 499
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=21.58 E-value=4.9e+02 Score=24.16 Aligned_cols=81 Identities=6% Similarity=0.055 Sum_probs=49.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHHhhcCCCCc
Q 008655 32 KVRILLCDNDSNSSDAVFSLLVKCSYQVT-SVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGL-KMLKYITRDKELQRI 109 (558)
Q Consensus 32 ~irVLIVDDd~~~r~~L~~lL~~~gyeV~-~Asdg~EALe~L~~~~~~PDLIILDi~MP~mDGl-ElL~~Ir~~~~~~~i 109 (558)
..+|||..-..-+-..+...|.+.|++|+ ...+.+.+-+..... ...+.++.+++-+.+.+ ++++++.+.. ..+
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~--g~i 80 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEF--GSV 80 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHH--SCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHc--CCC
Confidence 35789999999999999999999999987 455654444443332 23444444444444443 3455555432 355
Q ss_pred eEEEEec
Q 008655 110 PVIMMSA 116 (558)
Q Consensus 110 PVIVLSa 116 (558)
-+||..+
T Consensus 81 D~lv~nA 87 (254)
T 1hdc_A 81 DGLVNNA 87 (254)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 6666554
No 500
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=21.54 E-value=1.8e+02 Score=29.63 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=41.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 008655 33 VRILLCDNDSNSSDAVFSLLVKCSY---QV-TSVRSPRQVIDALNAEGSDIDLILAEV 86 (558)
Q Consensus 33 irVLIVDDd~~~r~~L~~lL~~~gy---eV-~~Asdg~EALe~L~~~~~~PDLIILDi 86 (558)
-+|+-||-++......++-+...++ .+ ....|..+.+..+...+..+|+|++|-
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 4899999999999988888877664 34 367788887766543234799999984
Done!