BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008658
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1
SV=1
Length = 512
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 286/559 (51%), Positives = 368/559 (65%), Gaps = 61/559 (10%)
Query: 3 MPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFM 62
M DP+ E ELYTIP+ SSWF WDDIHE ER EFF SSI+RTPK+YKEYRDF+
Sbjct: 1 MEATDPSA--EIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFI 58
Query: 63 INKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDS----DNRD 118
INK+RE+ RRLTFT VRK LVGDV+LL KVF L++WGLINF + + +D DN
Sbjct: 59 INKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDN-- 116
Query: 119 SSLGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLP 178
KIE+G P G+RV A PNSL+PI+ P V ETG+K+P
Sbjct: 117 -----------AKIEQGTPAGIRVTATPNSLRPITAP---------PLVEERVETGIKVP 156
Query: 179 PLASYLDVFGDLVKLKG-FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDD 237
PL SY DVF DL K C CGE+C+S Y+++KG ICEKCFKNGNYGE+ + DD
Sbjct: 157 PLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADD 216
Query: 238 FRFSDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPF 297
F+ L GNS A WTE E LLLLESV++HGD+WEL++Q+V TKS+LDCISKLIELPF
Sbjct: 217 FK---LIGNS--AAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPF 271
Query: 298 GEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATE 357
GEF+MGSA +G LN EN V+ + Q H++ ++ D E
Sbjct: 272 GEFLMGSA---------SGRLNP---SILTEDENTEQVQTDGQEHEETETREEKEDRVNE 319
Query: 358 -EPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDG 416
EPPAKRKR+A +S+G S+L+KQVA +++ VGP V AAA+AA+AALC+E+SCP+EIFD
Sbjct: 320 DEPPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDT 379
Query: 417 DEDYLANGLSSPTMVSDPERALQVDASKMEENQSETQDASSEKNDVPLNLRIRTATATAL 476
D DY S+ T+ +RA + MEE Q E +P+ LRIR + ATAL
Sbjct: 380 D-DY-----SNFTV----DRANGEKDTDMEEQQEEKDGPQG----LPVALRIRASVATAL 425
Query: 477 GAAAANAKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKEC 536
GAAAA AK+LADQE+RE+E L A +IE Q+KKL SK+ + DDLE IM++E + +KE
Sbjct: 426 GAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKET 485
Query: 537 LVEERIDVLERALKTGVSK 555
+++ER+ VL+ A ++G++K
Sbjct: 486 IIQERVSVLQCAFRSGITK 504
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 143/538 (26%), Positives = 243/538 (45%), Gaps = 122/538 (22%)
Query: 8 PNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYR 67
P++ + + +PS+SSWF W DI++ E +L EFFD S S+ PK Y R+ +I +YR
Sbjct: 39 PSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYR 98
Query: 68 EEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELK 127
++ R+++FT VR++LV DV + +VF LD WGLIN+ + +
Sbjct: 99 DDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSA------------------ 140
Query: 128 NQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVF 187
S KP+ A G G A T VK
Sbjct: 141 --------------------SAKPLKWEEKEA-GKSAGDAASEPATTVK----------- 168
Query: 188 GDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNS 247
+ C C C+ C+ K +C +C+ NY + +F+ ++ S
Sbjct: 169 ----ETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEES 224
Query: 248 LTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHE 307
W++ E LLLLE+VM +GD+W+ VA +V +++ DC+S+ ++LPFGE +
Sbjct: 225 ---KPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV----- 276
Query: 308 MNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIA 367
S++++ ++M DQ+ D + + G P KR ++
Sbjct: 277 -------------------KESDSEDGLEMFDQIKDS-DIPESEGIDKDGSSPNKRIKLT 316
Query: 368 PLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLANGLSS 427
PL+D + ++ Q A +S + G +V AAA AAV AL D DY A+ +S
Sbjct: 317 PLADASNPIMAQAAFLSALAGTNVAEAAARAAVRAL------------SDVDYEADKNAS 364
Query: 428 PTMVSDPERALQVDASKMEENQSETQDASSEKNDVPLNLRIRTATATALGAAAANAKLLA 487
DP R AS E ++E++ A A+AK L
Sbjct: 365 ----RDPNRQDANAASSGETTRNESE------------------------RAWADAKSLI 396
Query: 488 DQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVL 545
++E+ E+E + +E +MKK+ +I +F+ L+L ME+ ++ +++ L +++++
Sbjct: 397 EKEEHEVEGAIKETVEVEMKKIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIF 454
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 148/543 (27%), Positives = 243/543 (44%), Gaps = 74/543 (13%)
Query: 16 LYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLT 75
++ +P HS WF + + ER + +FF G S + TP+ Y E+R+ +++KY E P + LT
Sbjct: 175 VHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLT 234
Query: 76 FTQVRKSLVG-DVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEE 134
+ + + G D+ +VFR LD WG+IN+ A ++ RD S + +V +
Sbjct: 235 ISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNVPS 294
Query: 135 GAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPL---ASYLDVFGDLV 191
A + +SL PN G GE LP L + LD +
Sbjct: 295 AALTSI------DSLIKFDKPNCRHKG---------GEVYSSLPSLDGDSPDLD-----I 334
Query: 192 KLKGFKCGSCGEQCN---SGCYEYS--KGSFVICEKCFKNGNYGEDKSKDDF-RFSDLGG 245
+++ C S C+ Y S KG ++C CF +G + S DF R +
Sbjct: 335 RIREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKF 394
Query: 246 NSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSA 305
G WT+ ETLLLLE+V + +NW +A +V +KSK CI + LP +
Sbjct: 395 YGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVED------ 448
Query: 306 HEMNSSSCPTGSLNSLKEGQSASSENQN---DVKMEDQVHDQMNESKQNGDAATEEPPAK 362
G L++++ ++EN D K D D S+Q D + P K
Sbjct: 449 ----------GLLDNVEVSGVTNTENPTNGYDHKGTDSNGDLPGYSEQGSDTEIKLPFVK 498
Query: 363 RKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLA 422
+ ++ VA +++ VGP V A+ A +++ L + E G E L
Sbjct: 499 SP---------NPVMALVAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASLL 549
Query: 423 NGLSSPTMVSDPERALQVDASKMEENQSETQDASSEKNDVPLNLRIRTATATALGAAAAN 482
+G E Q A K + +Q+ + + +P + ++ A L AAA
Sbjct: 550 DG----------ENQQQDGAHK-----TSSQNGAEAQTPLPQD-KVMAAFRAGLSAAATK 593
Query: 483 AKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERI 542
AKL AD E+REI+ L A I+ Q+K++ K+ F ++E ++ KE ++ + ++ ER
Sbjct: 594 AKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERA 653
Query: 543 DVL 545
+L
Sbjct: 654 RML 656
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 155/353 (43%), Gaps = 49/353 (13%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+PS++ WF IH+ ER + EFF+G S +TP IYK+YRDFMIN YR EP+ LT T
Sbjct: 20 VPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTA 79
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEEGAPN 138
R++LVGDV + +V L++WGLIN+ D E + ++ P
Sbjct: 80 CRRNLVGDVCAIIRVHAFLEQWGLINYQI---------------DPETRPAFRL---PPI 121
Query: 139 GVRVVALPNSLKPISV-------PNSGADGSGNGKVAVAGETGVKLPPLASY-------L 184
V A+ N+ PI P G + + V E P L +
Sbjct: 122 SGHVQAISNT--PIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEE 179
Query: 185 DVFGDLVKLKGFKCGSCGEQCNSGCYEYSKG-SFVICEKCFKNGNYGEDKSKDDFRFSDL 243
D D V C +CG C+ Y K + IC C+K G + + DF D
Sbjct: 180 DEKSDKVPRVDKVCFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLCMDA 239
Query: 244 GGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMG 303
+ W+ ETLLLLE++ +GD+W +A +V +++K C+ +++P +
Sbjct: 240 IDFNHDEEKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIEDPYRQ 299
Query: 304 SAHEMNSSSCPTGSLNSLKEGQSASSENQNDV-----KMEDQVHDQMNESKQN 351
G + K+G EN+N V + V M E KQN
Sbjct: 300 KLQ---------GDFSPFKKGFLPFDENENPVLSTLTYLASIVQQGMKERKQN 343
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 446 EENQSETQDASSEKNDVPLNLRIRTATATALGAAAANAKLLADQEDREIEHLVAIIIETQ 505
++N+S Q +S N N R A AL +AA AKL+A E+R++ LV +I+ Q
Sbjct: 341 KQNESVKQGETSFGNSEFKNPLERVAYY-ALKSAAQKAKLIAAFENRQLRRLVFSLIQAQ 399
Query: 506 MKKLHSKINYFDDLELIMEKEYNEM 530
++KL K+ + LE + E +E+
Sbjct: 400 LEKLQLKMKVLEQLEKMCSLELSEL 424
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 137/295 (46%), Gaps = 33/295 (11%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS +SWF IHE E+ + +FF+ SS +TPK YK+ R+F+IN YR P LT T
Sbjct: 82 IPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITA 141
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLGDTELKNQVKIEEGAPN 138
VR+++ DV+ + K+ L++WGLIN+ R S S G ++
Sbjct: 142 VRRNVAMDVASIVKIHAFLEKWGLINYQIDPRTKPSLIGPSFTGHFQV------------ 189
Query: 139 GVRVVALPNSLKPI---SVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVFGDLVKL-- 193
V+ P LKP +V +G + V E V L + D D L
Sbjct: 190 ---VLDTPQGLKPFLPENVIKQEVEGGDGAEPQVKKEFPVNLTIKKNVYDSAQDFNALQD 246
Query: 194 ---------KGFKCGSCG-EQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDL 243
K + C +CG E N + +C +CF+ G++G + DF +
Sbjct: 247 ESRNSRQIHKVYICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLEN 306
Query: 244 GGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKL-DCISKLIELPF 297
GNS+ W++ E LLLLE + + D WE +A +V ++ DCI K + LP
Sbjct: 307 NGNSVK--KNWSDQEMLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPI 359
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 141/303 (46%), Gaps = 23/303 (7%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+P + WF + +HE E+ EFFDG + S+TP++YKEYRDFMI+ +R LTFT
Sbjct: 54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTA 113
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLG-----------DTELK 127
R++L GDV + +V R L++WGLIN+ + D R S +G DT
Sbjct: 114 CRRNLAGDVCAVLRVHRFLEQWGLINYNV-----NPDTRPSKIGPPSTSHFQILADTPRG 168
Query: 128 NQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVF 187
+ + + R A+ P V + D S + + G T + P L++ +
Sbjct: 169 LVPLLPPPSSSIPRSKAV-TIEDPSIVRTNIYDPSLDDVLKGKGSTPNQKPSLSNLHENN 227
Query: 188 GDLVKLKGFKCGSCGEQCNSGCYEYSKGS-FVICEKCFKNGNYGEDKSKDDFRFSDLGGN 246
D C CG + N Y+ + +C C++ + + D++ + N
Sbjct: 228 IDQSDSPQH-CYCCGNKFNESYYQSQTAQKYNVCISCYQQNRFPSPTTIADYKEVAIQ-N 285
Query: 247 SLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGE---FMMG 303
+ TWT E +LL E V + D+W VA +V TKS +CI K + LP + F M
Sbjct: 286 KIEDDDTWTAQELVLLSEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPSSDKALFKMD 345
Query: 304 SAH 306
H
Sbjct: 346 KVH 348
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1
SV=3
Length = 985
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 41/295 (13%)
Query: 16 LYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLT 75
++ +P+H WF W+ IH E +L FF+G RT ++Y+E R++++ K+ P+ ++
Sbjct: 144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIE 203
Query: 76 FTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDD----SDNRDSSLGDTE-LKNQV 130
+ + VGD +V LD WGLINF D SD+ D LGD E L N +
Sbjct: 204 LKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDD--LGDKESLLNSL 261
Query: 131 ---KIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVF 187
+++E P V A A +G+ P+A+
Sbjct: 262 YRFQVDEACPPLVHKPRF---------------------TAQATPSGLFPDPMAA----- 295
Query: 188 GDLVKLKG----FKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSD 242
+L+K +G + C SC C+ Y K F +C +CF +G + D S DF +
Sbjct: 296 DELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILME 355
Query: 243 LGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPF 297
WT+ ETLLLLE++ +NW +A++V TK+K C+ +++P
Sbjct: 356 PAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPI 410
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 483 AKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERI 542
AK LA QE+ +I L +IE Q+ KL +K++ F++ E + + ++ + ++ L ER
Sbjct: 846 AKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERA 905
Query: 543 DVLERALKTGV 553
++ A + GV
Sbjct: 906 QII--AARLGV 914
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1
SV=1
Length = 1214
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 426 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 485
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLG 122
R++L GDV + +V L++WGLIN+ D+++R + +G
Sbjct: 486 CRRNLAGDVCAIMRVHAFLEQWGLINYQV-----DAESRPTPMG 524
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 39/52 (75%)
Query: 490 EDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEER 541
E+R+I+ LVA+++ETQMKKL K+ +F++LE IM++E + ++ L+ +R
Sbjct: 880 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADR 931
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1
SV=2
Length = 1213
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 426 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 485
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLG 122
R++L GDV + +V L++WGLIN+ D+++R + +G
Sbjct: 486 CRRNLAGDVCAIMRVHAFLEQWGLINYQV-----DAESRPTPMG 524
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 39/52 (75%)
Query: 490 EDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEER 541
E+R+I+ LVA+++ETQMKKL K+ +F++LE IM++E + ++ L+ +R
Sbjct: 880 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADR 931
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 133/330 (40%), Gaps = 84/330 (25%)
Query: 12 PEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPS 71
P+ IPS+S WF + IH E +L EFF S+TP++Y YR+FM+N YR P+
Sbjct: 300 PQAHEIVIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPN 359
Query: 72 RRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSL----GDTELK 127
+ T R+++ GD + L ++ + L +WGLIN+ DS L + L
Sbjct: 360 EYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQV----------DSKLLPKNIEPPLT 409
Query: 128 NQVKIEEGAPNGVRVVALP-NSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDV 186
+Q AP G+ P S KP V+LP
Sbjct: 410 SQYSTRHDAPRGL----FPFESYKP----------------------SVQLP-------- 435
Query: 187 FGDLVKLKGFKCGSCGEQCNSGCYEYSK------------GSFVICEKCFKNGNYGEDKS 234
D+ KLK S E S Y+Y K S E KN N G+ +
Sbjct: 436 --DMAKLKKMMNTSDSE---STLYKYLKESKRKYDEITHPPSTTDDENGDKNDNGGKMNN 490
Query: 235 KDDFRFSDLG-GNSLTHGAT----------------WTEAETLLLLESVMRHGDNWELVA 277
+ S G N L G T W++ + LL+ + G +W VA
Sbjct: 491 EVSTSTSMTGDANLLEEGETSRPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVA 550
Query: 278 QNVPTKSKLDCISKLIELPF-GEFMMGSAH 306
+NV KS CI + ++LP +F+ G +
Sbjct: 551 KNVGNKSPEQCILRFLQLPIEDKFLYGDGN 580
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 424 GLSSP-TMVSDPERALQVDASKMEENQSETQDASSEKNDVPLNLRIRTATATALGAAAAN 482
GL +P T+ S +RA+Q E +S+ ++ S +K P+ I+ + A+ +
Sbjct: 616 GLVNPKTVQSMTQRAIQ----SAESIKSQKEEISDQK---PIE-HIKEGSEIAISSLGYR 667
Query: 483 AKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERI 542
+ + A E+R++ L +I QM+KL +K+N+ LE ME E + + +E L+ +R+
Sbjct: 668 SHIFATNEERQMNFLTNELIRLQMEKLDAKLNHLKKLEKFMELERKTLERQQENLLIQRL 727
Query: 543 DVLERALK 550
+ + + K
Sbjct: 728 NFNQNSSK 735
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 509
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLG 122
R++L GDV + +V L++WGL+N+ D ++R ++G
Sbjct: 510 CRRNLTGDVCAVMRVHAFLEQWGLVNYQV-----DPESRPMAMG 548
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 486 LADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVL 545
LA E+R+I+ LVA+++ETQMKKL K+ +F++LE IM++E + Q ++ L+ ER +
Sbjct: 883 LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFH 942
Query: 546 ERALK 550
LK
Sbjct: 943 MEQLK 947
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 510
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSSLG 122
R++L GDV + +V L++WGL+N+ D ++R ++G
Sbjct: 511 CRRNLTGDVCAVMRVHAFLEQWGLVNYQV-----DPESRPMAMG 549
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 486 LADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVL 545
LA E+R+I+ LVA+++ETQMKKL K+ +F++LE IM++E + Q ++ L+ ER +
Sbjct: 884 LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFH 943
Query: 546 ERALK 550
LK
Sbjct: 944 MEQLK 948
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 32/150 (21%)
Query: 190 LVKLKG--FKCGSCGEQCNSGCYEYSKGS--------------FVICEKCFKNGNYGEDK 233
L+K K F+C C C++ Y+ S +IC CF +GNY
Sbjct: 853 LIKKKKPLFECKKCKADCSNVRYQLVNNSTALDGNILPEYFYPMIICVNCFSSGNY---- 908
Query: 234 SKDDFRFSDLGGNSLTHGAT---WTEAETLLLLESVMRHGDNWELVAQNV-PTKSKLDCI 289
++F S H WT+ ETLLLLE + DNW+ ++ + +K+ C+
Sbjct: 909 --ENFIQSSSFQRIEQHQPEEFGWTDIETLLLLEGIEIFRDNWQEISDYIGGSKTPEQCL 966
Query: 290 SKLIELPF-GEFMMGSAHEMNSSSCPTGSL 318
+ I LP EF+ E SS P GSL
Sbjct: 967 THFIRLPIEDEFL-----ERKISSFPVGSL 991
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSLVG--------DVSLLHKVFRLLDEWGLINF 105
+YK YRD+MI Y++ P + L+ T V+ + ++ + K+F L+ W LIN
Sbjct: 353 LYKIYRDYMITSYQKNPYQYLSVTDVKNHFINQNKKTFKVNIRSIIKIFDFLEYWDLIN- 411
Query: 106 GAVSRGD 112
V+ GD
Sbjct: 412 CFVNSGD 418
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 31 IHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVS 88
I E E+ A+ EFF+G S+TP+ Y + R+++++++R + L T VR L GDV+
Sbjct: 327 ITEEEKQAISEFFEGRP-SKTPERYLKIRNYILDQWRRSKPKYLNKTSVRPGLKNCGDVN 385
Query: 89 LLHKVFRLLDEWGLINF 105
+ ++ L+ G INF
Sbjct: 386 CIGRIHTYLELIGAINF 402
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 31 IHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVS 88
I E E+ A+ EFF+G ++TP+ Y + R+++++++ + L T VR L GDV+
Sbjct: 377 IQEEEKQAIPEFFEGRQ-TKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVN 435
Query: 89 LLHKVFRLLDEWGLINFGA 107
+ ++ L+ G INFG
Sbjct: 436 CIGRIHTYLELIGAINFGC 454
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 31 IHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVS 88
I E E+ A+ EFF+G ++TP+ Y + R+++++++ + L T VR L GDV+
Sbjct: 388 ILEEEKQAIPEFFEGRQ-AKTPERYLKIRNYILDQWERCKPKYLNKTSVRPGLKNCGDVN 446
Query: 89 LLHKVFRLLDEWGLINFG 106
+ ++ L+ G INFG
Sbjct: 447 CIGRIHTYLELIGAINFG 464
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 31 IHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVS 88
I E E+ A+ EFF+G ++TP+ Y + R+++++++ + L T VR L GDV+
Sbjct: 386 IQEEEKQAIPEFFEGRQ-AKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVN 444
Query: 89 LLHKVFRLLDEWGLINFGA 107
+ ++ L+ G INFG
Sbjct: 445 CIGRIHTYLELIGAINFGC 463
>sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus gallus GN=TADA2A PE=2
SV=1
Length = 446
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 198 CGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEA 257
C S + C E F++C +CF G + K + D + + + WT
Sbjct: 20 CSSYLTEPYVKCAECGPPPFLLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPNWTAQ 78
Query: 258 ETLLLLESVMRHG-DNWELVAQNVPTKSKLDC 288
E + LLE+VM G NW+ VA + TKSK +C
Sbjct: 79 EEMALLEAVMDCGFGNWQDVANQMCTKSKEEC 110
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1
Length = 443
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 209 CYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMR 268
C E F +C +CF G + K + D + + + +WT E + LLE+VM
Sbjct: 31 CAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSWTAQEEMALLEAVMD 89
Query: 269 HG-DNWELVAQNVPTKSKLDC 288
G NW+ VA + TK+K +C
Sbjct: 90 CGFGNWQDVANQMCTKTKEEC 110
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3
Length = 443
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 209 CYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMR 268
C E F +C +CF G + K + D + + + +WT E + LLE+VM
Sbjct: 31 CAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSWTAQEEMALLEAVMD 89
Query: 269 HG-DNWELVAQNVPTKSKLDC 288
G NW+ VA + TK+K +C
Sbjct: 90 CGFGNWQDVANQMCTKTKEEC 110
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1
Length = 443
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 198 CGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEA 257
C S + C E F +C +CF G + K + D + + + +WT
Sbjct: 20 CSSYLTEPYIKCAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSWTAQ 78
Query: 258 ETLLLLESVMRHG-DNWELVAQNVPTKSKLDC 288
E + LLE+VM G NW+ VA + TK+K +C
Sbjct: 79 EEMALLEAVMDCGFGNWQDVANQMCTKTKEEC 110
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2
SV=1
Length = 443
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 209 CYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMR 268
C E F +C +CF G + K + D + + + +WT E + LLE+VM
Sbjct: 31 CAECGPPPFFLCLQCFTRG-FEYKKHQSDHTYEIMTSDFPVLDPSWTAQEEMALLEAVMD 89
Query: 269 HG-DNWELVAQNVPTKSKLDC 288
G NW+ VA + TK+K +C
Sbjct: 90 CGFGNWQDVANQMCTKTKEEC 110
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 31 IHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVS 88
I + E+ A+ EFF+G ++TP Y R+++++++ + L T VR L GDV+
Sbjct: 358 ILDEEKQAIPEFFEGRQ-AKTPDRYLRIRNYILDQWENCKPKYLNKTSVRPGLKNCGDVN 416
Query: 89 LLHKVFRLLDEWGLINFGA 107
+ ++ L+ G INFG
Sbjct: 417 CIGRIHTYLELIGAINFGC 435
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 189 DLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNG-NYGEDKSKDDFRFSDLGGNS 247
DL L FKC C + F +C +CF G K+ +R D S
Sbjct: 59 DLSGLVRFKCAVCMD-------------FDLCVECFSVGVELNRHKNSHPYRVMDNLSFS 105
Query: 248 LTHGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCI 289
L + W E +LLLE++ +G NW+ VA +V +K+ +CI
Sbjct: 106 LV-TSDWNADEEILLLEAIATYGFGNWKEVADHVGSKTTTECI 147
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 31 IHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVS 88
I E E+ KEFFDG ++TP+ Y + R+ +++ + L T R L GDV+
Sbjct: 424 ITEEEKEVHKEFFDGRQ-TKTPERYLKIRNHLLDCWERTKPEYLRKTVARAGLRNCGDVN 482
Query: 89 LLHKVFRLLDEWGLINFG 106
+ ++ L+ G INFG
Sbjct: 483 CIGRIHGYLERIGAINFG 500
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 20 PSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQV 79
P+ + + I + E KE+F G IS+TP Y + RD +I ++ L+ T
Sbjct: 528 PTKERYLDLNIITQEEMMGCKEYFTGQ-ISKTPDRYIKIRDKIIRQWDSFKPNYLSKTFS 586
Query: 80 RKSLV---GDVSLLHKVFRLLDEWGLINFGAV 108
R + D++ + +V + L+ G+INF AV
Sbjct: 587 RNQIKDCGSDINSIGRVHQFLESIGVINFNAV 618
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 216 SFVICEKCFKNG-NYGEDKSKDDFRFSDLGGNSLT----HGATWTEAETLLLLESVMRHG 270
+F +C +CF G G ++ ++F D G + L+ GA WT E + LL+++ ++G
Sbjct: 32 NFDLCLQCFAAGAEIGAHQNNHSYQFMDTGTSILSVFRGKGA-WTAREEIRLLDAIEQYG 90
Query: 271 -DNWELVAQNVPTKSKLD 287
NWE +++++ TKS D
Sbjct: 91 FGNWEDISKHIETKSAED 108
>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2
SV=1
Length = 618
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 239 RFSDLGGNSLTHGATWTEAETLLLLESVMRH----GDNWELVAQNVPTKSKLDCISKLIE 294
RF +G +S + A WT E LL +++ + + WE +++ VP +SK DC+ + E
Sbjct: 540 RFDAVGADS--NAAAWTTEEQKLLEQALKTYPVSTAERWERISEAVPGRSKKDCMKRYKE 597
Query: 295 L 295
L
Sbjct: 598 L 598
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 217 FVICEKCFKNG-NYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG-DNWE 274
F +C +CF G +S +R D L W E +LLLE + +G NW
Sbjct: 74 FDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLI-CPDWNADEEILLLEGIEMYGLGNWA 132
Query: 275 LVAQNVPTKSKLDCI 289
VA++V TK+K CI
Sbjct: 133 EVAEHVGTKTKAQCI 147
>sp|O60341|KDM1A_HUMAN Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A
PE=1 SV=2
Length = 852
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 46 SSISRTPKIYKEYRDFMINKYREEPSRRLTF----TQVRKSLVGDVSLLHKVFRLLDEWG 101
S +T K++ R+ + + + P +LTF Q+ D L+H+V L+ G
Sbjct: 201 SGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHG 260
Query: 102 LINFGAVSR 110
LINFG R
Sbjct: 261 LINFGIYKR 269
>sp|Q6ZQ88|KDM1A_MOUSE Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a
PE=1 SV=2
Length = 853
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 46 SSISRTPKIYKEYRDFMINKYREEPSRRLTF----TQVRKSLVGDVSLLHKVFRLLDEWG 101
S +T K++ R+ + + + P +LTF Q+ D L+H+V L+ G
Sbjct: 202 SGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHG 261
Query: 102 LINFGAVSR 110
LINFG R
Sbjct: 262 LINFGIYKR 270
>sp|P49859|PORTL_BPHK7 Portal protein OS=Enterobacteria phage HK97 GN=3 PE=3 SV=1
Length = 424
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 378 KQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDYLANGLSSPTMVSDPERA 437
K++ H+ G T + +A C + + D D+ ANG SP ++S E+
Sbjct: 178 KEIFHLK---GFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKV 234
Query: 438 L-QVDASKMEENQSETQDASSEKNDVPLNLRIRTATATALGAAAANAKLLADQE 490
L + S++EEN E +K L T +A+G +A+++A ++
Sbjct: 235 LTEQQRSQVEENFKEIAGGPVKKRLWILEAGFST---SAIGVTPQDAEMMASRK 285
>sp|Q61712|DNJC1_MOUSE DnaJ homolog subfamily C member 1 OS=Mus musculus GN=Dnajc1 PE=1
SV=1
Length = 552
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 254 WTEAETLLLLESVMRH----GDNWELVAQNVPTKSKLDCISK---LIEL 295
WT+++ LL ++ ++ D W+ +A+ VP+KSK DCI++ L+EL
Sbjct: 495 WTQSQQKLLELALQQYPKGASDRWDKIAKCVPSKSKEDCIARYKLLVEL 543
>sp|O15816|MYBB_DICDI Myb-like protein B OS=Dictyostelium discoideum GN=mybB PE=2 SV=2
Length = 711
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 252 ATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDC 288
+W EAE LL + V +HG +W+ VA + T++ + C
Sbjct: 493 GSWDEAEEELLFQLVDKHGQSWKNVAIEIKTRTDIQC 529
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 254 WTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDC 288
WTE E + + ++ HG NW +A+ V TKS+ C
Sbjct: 627 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQC 661
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 254 WTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDC 288
WTE E + + ++ HG NW +A+ V TKS+ C
Sbjct: 628 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQC 662
>sp|Q96KC8|DNJC1_HUMAN DnaJ homolog subfamily C member 1 OS=Homo sapiens GN=DNAJC1 PE=1
SV=1
Length = 554
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 254 WTEAETLLLLESVMRH----GDNWELVAQNVPTKSKLDCISK---LIEL 295
WT+ + LL ++ ++ D W+ +A+ VP+KSK DCI++ L+EL
Sbjct: 497 WTQNQQKLLELALQQYPRGSSDRWDKIARCVPSKSKEDCIARYKLLVEL 545
>sp|Q9P6H9|REB1_SCHPO DNA-binding protein reb1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=reb1 PE=3 SV=1
Length = 504
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 203 EQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262
E+ E+ K I K + N D+ +D RF G+ L A E ET LL
Sbjct: 322 EELRKNVVEHGKCWTKIGRKMARMPNDCRDRWRDVVRF----GDKLKRNAWSLEEETQLL 377
Query: 263 -LESVMRHGD------NWELVAQNVPTKSKLDCISKLIEL 295
+ + +R+ + NW LVAQ + T+++L C K +L
Sbjct: 378 QIVAELRNREDLSSDINWTLVAQMLGTRTRLQCRYKFQQL 417
>sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BAS1 PE=1 SV=1
Length = 811
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 254 WTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295
WT+ E LL++ HG +W ++ ++P +++ C + IE+
Sbjct: 119 WTQEEDEQLLKAYEEHGPHWLSISMDIPGRTEDQCAKRYIEV 160
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 254 WTEAETLLLLESVMRHGDN----WELVAQNVPTKSKLDCISKLIEL 295
WT E LL +++ + N WE +A+ VP +SK DC+ + EL
Sbjct: 553 WTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRSKKDCMKRYKEL 598
>sp|P04197|MYB_DROME Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2
Length = 657
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 251 GATWTEAETLLLLESVMRHGDNWELVA 277
G W+++E +LL + V HG+NWE++
Sbjct: 85 GKRWSKSEDVLLKQLVETHGENWEIIG 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,514,193
Number of Sequences: 539616
Number of extensions: 9180564
Number of successful extensions: 24093
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 23957
Number of HSP's gapped (non-prelim): 196
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)