Query 008658
Match_columns 558
No_of_seqs 246 out of 683
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 6.4E-42 2.2E-46 297.6 10.0 93 17-109 11-103 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 5E-41 1.7E-45 296.2 9.2 95 15-110 11-107 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 5E-16 1.7E-20 129.3 9.2 60 249-308 16-75 (79)
4 2elk_A SPCC24B10.08C protein; 99.3 1.2E-12 4.2E-17 102.5 6.3 49 250-298 8-58 (58)
5 1x41_A Transcriptional adaptor 99.2 1.1E-11 3.8E-16 97.6 6.5 50 249-298 6-56 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.1 6.7E-11 2.3E-15 96.8 5.6 62 235-300 5-70 (73)
7 1gvd_A MYB proto-oncogene prot 99.0 7.2E-10 2.5E-14 84.5 6.3 44 251-294 3-47 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.0 6E-10 2.1E-14 84.9 5.6 44 251-294 3-47 (52)
9 1wgx_A KIAA1903 protein; MYB D 99.0 7.5E-10 2.6E-14 90.3 6.3 46 250-295 7-56 (73)
10 2d9a_A B-MYB, MYB-related prot 98.9 1.4E-09 4.7E-14 85.4 7.0 46 249-294 6-52 (60)
11 1w0t_A Telomeric repeat bindin 98.9 1.1E-09 3.8E-14 83.8 5.8 44 251-294 2-48 (53)
12 2cu7_A KIAA1915 protein; nucle 98.9 1.7E-09 5.7E-14 88.1 6.4 46 249-294 7-52 (72)
13 2yum_A ZZZ3 protein, zinc fing 98.9 9.7E-10 3.3E-14 90.1 5.0 46 249-294 6-57 (75)
14 2dim_A Cell division cycle 5-l 98.9 2.8E-09 9.6E-14 86.2 7.1 46 249-294 7-53 (70)
15 3sjm_A Telomeric repeat-bindin 98.8 3.2E-09 1.1E-13 84.7 5.8 45 250-294 10-57 (64)
16 1ity_A TRF1; helix-turn-helix, 98.8 7.2E-09 2.5E-13 83.6 6.7 45 250-294 9-56 (69)
17 2eqr_A N-COR1, N-COR, nuclear 98.8 1.2E-08 4E-13 80.6 6.7 45 250-294 11-55 (61)
18 2din_A Cell division cycle 5-l 98.7 1.1E-08 3.8E-13 81.7 5.9 45 249-294 7-51 (66)
19 2cjj_A Radialis; plant develop 98.7 1.5E-08 5.1E-13 86.6 5.2 46 250-295 7-56 (93)
20 2ltp_A Nuclear receptor corepr 98.1 3.2E-09 1.1E-13 90.0 0.0 46 249-294 14-59 (89)
21 2llk_A Cyclin-D-binding MYB-li 98.6 4.4E-08 1.5E-12 80.0 6.3 46 249-295 21-66 (73)
22 2k9n_A MYB24; R2R3 domain, DNA 98.6 5.6E-08 1.9E-12 84.8 6.2 43 252-294 2-45 (107)
23 1gv2_A C-MYB, MYB proto-oncoge 98.6 7.4E-08 2.5E-12 83.6 6.4 45 250-294 3-48 (105)
24 3osg_A MYB21; transcription-DN 98.5 7.5E-08 2.6E-12 86.5 6.1 46 249-294 9-54 (126)
25 2iw5_B Protein corest, REST co 98.5 9.8E-08 3.4E-12 92.9 6.0 45 250-294 132-176 (235)
26 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.4E-07 4.7E-12 82.4 5.9 45 250-294 52-96 (107)
27 1gv2_A C-MYB, MYB proto-oncoge 98.5 1.4E-07 4.6E-12 81.9 5.8 45 250-294 55-99 (105)
28 1h8a_C AMV V-MYB, MYB transfor 98.5 2.1E-07 7E-12 83.7 7.1 45 250-294 26-71 (128)
29 3osg_A MYB21; transcription-DN 98.5 1.4E-07 4.8E-12 84.7 5.8 45 250-294 61-105 (126)
30 2yqk_A Arginine-glutamic acid 98.5 3.1E-07 1.1E-11 72.9 6.9 45 249-293 7-52 (63)
31 3zqc_A MYB3; transcription-DNA 98.5 1.1E-07 3.7E-12 86.0 4.6 44 251-294 2-46 (131)
32 2z3y_A Lysine-specific histone 98.5 9.4E-08 3.2E-12 107.6 5.2 87 22-110 8-98 (662)
33 2ckx_A NGTRF1, telomere bindin 98.4 1.8E-07 6.1E-12 78.3 5.6 43 252-294 1-48 (83)
34 4gut_A Lysine-specific histone 98.4 3.4E-07 1.2E-11 105.1 9.6 88 16-109 216-322 (776)
35 1h8a_C AMV V-MYB, MYB transfor 98.4 3.9E-07 1.3E-11 81.8 6.9 46 250-295 78-123 (128)
36 3zqc_A MYB3; transcription-DNA 98.4 4.1E-07 1.4E-11 82.2 6.3 45 250-294 53-97 (131)
37 2xag_B REST corepressor 1; ami 98.3 6.8E-07 2.3E-11 96.3 6.0 45 250-294 379-423 (482)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1E-06 3.4E-11 71.8 5.2 50 250-301 7-60 (72)
39 2crg_A Metastasis associated p 98.2 1.6E-06 5.3E-11 70.3 6.0 44 251-294 8-52 (70)
40 1h89_C C-MYB, MYB proto-oncoge 98.1 2.7E-06 9.2E-11 79.1 6.8 45 250-294 57-102 (159)
41 1h89_C C-MYB, MYB proto-oncoge 98.1 2.6E-06 9E-11 79.2 6.7 46 250-295 109-154 (159)
42 2roh_A RTBP1, telomere binding 98.1 2E-06 6.8E-11 76.8 5.5 45 250-294 30-79 (122)
43 2aje_A Telomere repeat-binding 98.1 2E-06 7E-11 74.9 5.1 45 250-294 12-61 (105)
44 4eef_G F-HB80.4, designed hema 98.1 3.8E-07 1.3E-11 73.9 0.3 43 250-292 19-65 (74)
45 4a69_C Nuclear receptor corepr 98.1 3.5E-06 1.2E-10 72.1 6.1 44 251-294 43-86 (94)
46 2juh_A Telomere binding protei 98.0 3E-06 1E-10 75.6 4.2 45 250-294 16-65 (121)
47 1x58_A Hypothetical protein 49 97.8 1.7E-05 5.9E-10 62.4 5.0 46 250-295 7-55 (62)
48 2xag_A Lysine-specific histone 97.6 3.7E-05 1.3E-09 89.1 5.8 86 22-109 179-268 (852)
49 2e5r_A Dystrobrevin alpha; ZZ 97.5 0.0001 3.6E-09 58.3 4.6 47 196-242 12-61 (63)
50 1ign_A Protein (RAP1); RAP1,ye 97.4 0.00011 3.9E-09 72.1 4.6 45 250-294 7-57 (246)
51 2dip_A Zinc finger SWIM domain 97.2 9.3E-05 3.2E-09 63.7 1.6 56 193-258 29-86 (98)
52 2fc7_A ZZZ3 protein; structure 97.0 0.00062 2.1E-08 56.6 4.9 53 193-245 19-77 (82)
53 1tot_A CREB-binding protein; z 96.1 0.0022 7.6E-08 48.7 2.2 42 195-242 6-48 (52)
54 3hm5_A DNA methyltransferase 1 96.1 0.0072 2.5E-07 51.3 5.5 44 251-294 30-78 (93)
55 2cuj_A Transcriptional adaptor 96.0 0.017 5.9E-07 50.3 7.4 70 27-104 37-106 (108)
56 2aqe_A Transcriptional adaptor 95.9 0.015 5E-07 49.1 6.5 70 27-104 19-88 (90)
57 2ebi_A DNA binding protein GT- 95.8 0.0038 1.3E-07 51.9 2.5 45 251-295 4-62 (86)
58 1fex_A TRF2-interacting telome 95.8 0.008 2.7E-07 46.8 4.1 44 251-294 2-55 (59)
59 1ug2_A 2610100B20RIK gene prod 95.8 0.011 3.6E-07 49.7 5.0 44 252-295 34-80 (95)
60 2elj_A Transcriptional adapter 95.4 0.032 1.1E-06 46.9 6.8 70 27-103 19-88 (88)
61 2xag_B REST corepressor 1; ami 95.3 0.003 1E-07 68.2 0.0 50 251-300 189-238 (482)
62 1ofc_X ISWI protein; nuclear p 95.0 0.021 7.3E-07 58.3 5.3 41 252-292 111-152 (304)
63 2lr8_A CAsp8-associated protei 93.2 0.0089 3.1E-07 47.6 0.0 43 252-295 15-60 (70)
64 4iej_A DNA methyltransferase 1 92.9 0.16 5.4E-06 43.0 5.7 44 251-294 30-78 (93)
65 2xb0_X Chromo domain-containin 91.8 0.15 5.3E-06 51.2 5.1 31 249-279 166-197 (270)
66 4b4c_A Chromodomain-helicase-D 91.3 0.19 6.4E-06 48.1 5.0 30 250-279 133-163 (211)
67 1irz_A ARR10-B; helix-turn-hel 88.7 0.74 2.5E-05 36.3 5.5 42 251-292 7-53 (64)
68 4b4c_A Chromodomain-helicase-D 87.5 0.57 2E-05 44.7 5.1 41 251-291 7-52 (211)
69 2y9y_A Imitation switch protei 81.9 1.4 4.8E-05 46.1 5.3 42 252-294 124-167 (374)
70 1ofc_X ISWI protein; nuclear p 81.5 1.1 3.9E-05 45.5 4.4 47 249-295 210-272 (304)
71 1f5n_A Interferon-induced guan 68.3 40 0.0014 37.2 12.7 59 492-553 507-565 (592)
72 2fu4_A Ferric uptake regulatio 59.2 7.7 0.00026 30.7 3.6 50 58-107 18-72 (83)
73 2heo_A Z-DNA binding protein 1 58.7 11 0.00037 29.2 4.3 52 52-104 5-56 (67)
74 3q8t_A Beclin-1; autophagy, AT 56.3 88 0.003 26.1 11.6 46 500-545 35-80 (96)
75 2y9y_A Imitation switch protei 55.9 10 0.00034 39.7 4.7 46 250-295 227-288 (374)
76 2htj_A P fimbrial regulatory p 55.7 25 0.00085 27.7 6.1 47 59-107 2-48 (81)
77 1mzb_A Ferric uptake regulatio 50.6 17 0.00059 31.8 4.8 49 58-106 19-72 (136)
78 3lay_A Zinc resistance-associa 49.6 1.2E+02 0.0041 28.2 10.5 34 522-555 114-147 (175)
79 2o03_A Probable zinc uptake re 47.2 25 0.00085 30.6 5.2 54 54-108 8-66 (131)
80 1v5n_A PDI-like hypothetical p 43.4 14 0.00047 30.6 2.8 32 195-226 47-78 (89)
81 2xig_A Ferric uptake regulatio 43.0 28 0.00094 31.1 5.0 51 55-106 25-80 (150)
82 2w57_A Ferric uptake regulatio 42.8 20 0.00067 32.1 3.9 48 58-105 18-70 (150)
83 4ham_A LMO2241 protein; struct 40.1 46 0.0016 28.8 5.9 58 49-107 11-72 (134)
84 1ovx_A ATP-dependent CLP prote 38.8 16 0.00055 28.9 2.3 33 195-227 18-50 (67)
85 3e7l_A Transcriptional regulat 37.0 26 0.00088 26.5 3.2 27 256-282 18-44 (63)
86 2fe3_A Peroxide operon regulat 36.9 38 0.0013 29.9 4.9 49 58-107 23-76 (145)
87 3ny3_A E3 ubiquitin-protein li 36.6 21 0.0007 28.8 2.7 30 209-242 17-50 (75)
88 3nis_A E3 ubiquitin-protein li 35.4 25 0.00086 28.8 3.0 30 209-242 21-54 (82)
89 3tqn_A Transcriptional regulat 35.2 47 0.0016 28.0 5.0 54 52-106 12-66 (113)
90 2ds5_A CLPX, ATP-dependent CLP 34.8 21 0.00071 26.7 2.2 31 196-226 12-42 (51)
91 2xb0_X Chromo domain-containin 34.5 54 0.0019 32.6 5.9 42 251-292 3-49 (270)
92 3mwm_A ZUR, putative metal upt 34.3 61 0.0021 28.4 5.7 52 54-106 11-67 (139)
93 2e50_A Protein SET; histone ch 34.0 94 0.0032 29.9 7.4 35 516-555 42-80 (225)
94 2olm_A Nucleoporin-like protei 33.3 48 0.0017 29.7 4.9 56 195-263 25-81 (140)
95 3r0a_A Putative transcriptiona 32.6 69 0.0024 27.3 5.7 51 59-109 28-78 (123)
96 3eyy_A Putative iron uptake re 32.0 39 0.0013 29.9 4.1 46 58-105 20-70 (145)
97 2owa_A Arfgap-like finger doma 30.7 57 0.002 29.2 4.9 56 195-262 36-92 (138)
98 3by6_A Predicted transcription 30.5 75 0.0026 27.4 5.6 53 52-105 14-67 (126)
99 3sub_A ADP-ribosylation factor 30.2 48 0.0016 30.6 4.3 56 195-262 22-78 (163)
100 2ek5_A Predicted transcription 28.8 53 0.0018 28.6 4.3 54 52-106 7-61 (129)
101 2crw_A ARF GAP 3, ADP-ribosyla 28.8 49 0.0017 30.1 4.1 57 195-262 29-86 (149)
102 2crr_A Stromal membrane-associ 28.2 40 0.0014 30.3 3.4 56 196-263 30-86 (141)
103 3htu_B Vacuolar protein-sortin 27.2 50 0.0017 23.3 3.0 25 504-528 12-37 (39)
104 4ets_A Ferric uptake regulatio 27.0 62 0.0021 29.3 4.6 47 58-105 34-87 (162)
105 2d1h_A ST1889, 109AA long hypo 26.4 96 0.0033 24.6 5.3 38 72-109 35-72 (109)
106 1weo_A Cellulose synthase, cat 26.4 34 0.0012 28.6 2.4 46 195-240 16-70 (93)
107 2d8v_A Zinc finger FYVE domain 25.7 1E+02 0.0036 24.2 4.9 43 195-240 8-51 (67)
108 2p57_A GTPase-activating prote 25.7 48 0.0016 30.0 3.4 57 195-262 37-94 (144)
109 1gmj_A ATPase inhibitor; coile 25.5 2.8E+02 0.0096 22.7 8.9 53 479-535 27-79 (84)
110 2oqg_A Possible transcriptiona 24.8 1.1E+02 0.0036 25.0 5.3 48 58-108 22-69 (114)
111 2iqj_A Stromal membrane-associ 24.5 63 0.0021 28.7 4.0 56 195-262 27-83 (134)
112 2k4b_A Transcriptional regulat 24.3 1E+02 0.0035 25.6 5.0 42 64-108 43-88 (99)
113 2b0l_A GTP-sensing transcripti 24.1 55 0.0019 27.3 3.3 67 32-107 8-77 (102)
114 2x4h_A Hypothetical protein SS 23.6 1.2E+02 0.004 25.7 5.6 54 51-107 12-65 (139)
115 3neu_A LIN1836 protein; struct 23.5 74 0.0025 27.3 4.2 54 52-106 16-70 (125)
116 1ign_A Protein (RAP1); RAP1,ye 23.3 1.2E+02 0.0042 29.7 6.0 23 272-294 173-195 (246)
117 1cf7_A Protein (transcription 23.1 1.2E+02 0.0041 24.3 5.0 47 57-104 15-62 (76)
118 1bja_A Transcription regulator 22.1 87 0.003 26.3 4.1 35 68-104 27-62 (95)
119 2kj5_A Phage integrase; GFT PS 22.1 54 0.0019 26.4 2.9 22 87-108 76-97 (116)
120 2kj8_A Putative prophage CPS-5 22.0 1.1E+02 0.0036 25.0 4.8 48 58-105 34-93 (118)
121 4efa_E V-type proton ATPase su 22.0 5E+02 0.017 24.4 14.1 85 466-550 15-101 (233)
122 3cuo_A Uncharacterized HTH-typ 21.7 1.4E+02 0.0047 23.5 5.3 49 58-108 25-73 (99)
123 1qgp_A Protein (double strande 21.7 1.5E+02 0.0053 23.2 5.4 53 54-106 11-64 (77)
124 2vn2_A DNAD, chromosome replic 21.3 94 0.0032 26.7 4.4 41 69-109 47-87 (128)
125 3oja_B Anopheles plasmodium-re 21.0 3.8E+02 0.013 28.5 10.2 27 518-544 548-574 (597)
126 1v4r_A Transcriptional repress 20.9 31 0.0011 28.3 1.1 54 51-105 13-67 (102)
127 2frh_A SARA, staphylococcal ac 20.4 1.8E+02 0.0061 24.4 6.0 42 69-110 49-90 (127)
128 2pjp_A Selenocysteine-specific 20.3 1.4E+02 0.0048 25.3 5.3 51 51-103 60-110 (121)
129 3dwd_A ADP-ribosylation factor 20.3 74 0.0025 28.9 3.5 56 195-262 38-94 (147)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=6.4e-42 Score=297.59 Aligned_cols=93 Identities=38% Similarity=0.746 Sum_probs=84.7
Q ss_pred eecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHh
Q 008658 17 YTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRL 96 (558)
Q Consensus 17 iiIPs~~~wF~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~F 96 (558)
=.-|+|++||+|++||+|||++|||||+|++++|||++|++|||+||++||.||.+|||+|+||++|+|||++|+|||+|
T Consensus 11 ~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~F 90 (104)
T 2fq3_A 11 GMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKF 90 (104)
T ss_dssp ------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHH
T ss_pred CCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCC
Q 008658 97 LDEWGLINFGAVS 109 (558)
Q Consensus 97 Le~wGlIN~~~~~ 109 (558)
||+|||||||++|
T Consensus 91 Le~wGLIN~~v~~ 103 (104)
T 2fq3_A 91 LTKWGLINYQVDS 103 (104)
T ss_dssp HHHTTSSSSCC--
T ss_pred HHHcCeeccCCCC
Confidence 9999999999997
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=5e-41 Score=296.21 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=92.5
Q ss_pred ceeecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhc--cchHHHHHH
Q 008658 15 ELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVSLLHK 92 (558)
Q Consensus 15 ~~iiIPs~~~wF~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l--~gD~~~i~r 92 (558)
++++||+|++||++++||+|||++|||||+|+ ++|||++|++|||+||++||.||.+|||+|+||++| +|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 67999999999999999999999999999998 799999999999999999999999999999999999 699999999
Q ss_pred HHHhhhhhcccccccCCC
Q 008658 93 VFRLLDEWGLINFGAVSR 110 (558)
Q Consensus 93 vh~FLe~wGlIN~~~~~~ 110 (558)
||+|||+|||||||+++.
T Consensus 90 Vh~FLe~wGLIN~~~~~~ 107 (111)
T 2dce_A 90 IHTYLELIGAINFGCEQA 107 (111)
T ss_dssp HHHHHHHHSSSSCSCTTS
T ss_pred HHHHHHHcCeeecCCChh
Confidence 999999999999999984
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=129.26 Aligned_cols=60 Identities=32% Similarity=0.634 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcCCcCCCCCCCcccc
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEM 308 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~LPIeD~~l~~~~~~ 308 (558)
.....||.+|+.+||++|++||++|.+||++||+||+.||+.||+++||+|+|+...++.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~ 75 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSG 75 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCC
Confidence 356789999999999999999999999999999999999999999999999999877643
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.34 E-value=1.2e-12 Score=102.47 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHHcCCcC
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLIELPFG 298 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg-~kt~~eC~~~fl~LPIe 298 (558)
....||.+|+.+|+++|++|| ++|..||++|| +||+.||..||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 467899999999999999999 99999999999 99999999999987763
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=1.1e-11 Score=97.58 Aligned_cols=50 Identities=36% Similarity=0.627 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHcCCcC
Q 008658 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIELPFG 298 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~LPIe 298 (558)
.....||.+|+.+|+++|++|| ++|..||++|++||+.||..||.++.+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3567899999999999999999 8999999999999999999999986554
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.10 E-value=6.7e-11 Score=96.79 Aligned_cols=62 Identities=26% Similarity=0.391 Sum_probs=50.9
Q ss_pred CCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcCCcCCC
Q 008658 235 KDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEF 300 (558)
Q Consensus 235 ~~df~~~~~~~~~~~~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~~vg~kt~~eC~~~fl~LPIeD~ 300 (558)
..++.+.+... .....||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|+
T Consensus 5 ~~~~~~~~~~~---~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 5 SSGSLRKERAR---SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSSCCCCCTTT---CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccccc---cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 34555554443 3567899999999999999999 6899999999999999999999875 5554
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.97 E-value=7.2e-10 Score=84.48 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
...||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence 56899999999999999999 589999999999999999999975
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.97 E-value=6e-10 Score=84.87 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHGD-NWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~-~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
...||.+|+.+|+++|++||. +|..||+++++||+.||..||..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 468999999999999999995 99999999999999999999975
No 9
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=7.5e-10 Score=90.31 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
....||.+|+.+|.+||..|+ ++|++||.+||+||.+||+.||..|
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999998 5799999999999999999999876
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=1.4e-09 Score=85.36 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 3467899999999999999999 699999999999999999999975
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.93 E-value=1.1e-09 Score=83.83 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC--CCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg--~kt~~eC~~~fl~ 294 (558)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36799999999999999999 79999999999 9999999999976
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=1.7e-09 Score=88.13 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++|+.||.+|..||.+|++||..||..||..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~ 52 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 52 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999864
No 13
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.7e-10 Score=90.10 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC------CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHG------DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g------~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++|++|| .+|..||++|++||..||..||..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 3467899999999999999999 799999999999999999999964
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.8e-09 Score=86.22 Aligned_cols=46 Identities=28% Similarity=0.588 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++|++|| ++|..||.+|++||..||..||.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3467899999999999999999 899999999999999999999986
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.84 E-value=3.2e-09 Score=84.71 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC--CCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg--~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n 57 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH
Confidence 356899999999999999999 79999999987 8999999999965
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.80 E-value=7.2e-09 Score=83.59 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC--CCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg--~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 467899999999999999999 79999999999 9999999999985
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=80.57 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||++|..+|++++.+||.+|..||.+|++||..||+.+|..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999963
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=81.74 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++++.||.+|..||+.+| ||..||..||..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~ 51 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEF 51 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHH
Confidence 346789999999999999999999999999665 999999999975
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.68 E-value=1.5e-08 Score=86.60 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
....||.+|+.+|+++|.+|| +.|.+||.+|++||.+||..||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999997 5799999999999999999999874
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.08 E-value=3.2e-09 Score=90.03 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++++.||.+|..||.+|++||..||..||..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~ 59 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN 59 (89)
Confidence 4567899999999999999999999999999999999999999964
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.62 E-value=4.4e-08 Score=80.05 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
.....||.+|+.+|++++.+||..|..||+++ +||..+|..+|..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999 99999999999764
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.58 E-value=5.6e-08 Score=84.82 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 252 ~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
..||.+|+.+|+++|+.|| ++|..||++|++||+.||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 4799999999999999999 599999999999999999999986
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.56 E-value=7.4e-08 Score=83.57 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|+++|++|| ++|..||+++++||+.||..||.+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 357899999999999999999 589999999999999999999986
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.54 E-value=7.5e-08 Score=86.49 Aligned_cols=46 Identities=22% Similarity=0.556 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.....||.+|+.+|+++|++||.+|..||+++++||..||..||.+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 3467899999999999999999999999999999999999999985
No 25
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.50 E-value=9.8e-08 Score=92.93 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||++|..++++|+.+||.||..||++||+||..||+.||..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999973
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.48 E-value=1.4e-07 Score=82.36 Aligned_cols=45 Identities=16% Similarity=0.384 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 96 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMM 96 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999975
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.48 E-value=1.4e-07 Score=81.89 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999975
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.47 E-value=2.1e-07 Score=83.70 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|+++|++|| ++|..||+++++||..||..||..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 467899999999999999999 689999999999999999999986
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.47 E-value=1.4e-07 Score=84.72 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999965
No 30
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.1e-07 Score=72.88 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-cCCCCHHHHHHHHH
Q 008658 249 THGATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLI 293 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~-vg~kt~~eC~~~fl 293 (558)
.....||++|..++++||.+||.||..|+.+ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3467899999999999999999999999996 99999999999995
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.45 E-value=1.1e-07 Score=86.00 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
.+.||.+|+.+|+++|+.|| ++|..||.+|++||+.||..||.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 46799999999999999999 899999999999999999999975
No 32
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.45 E-value=9.4e-08 Score=107.55 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHh----hhccchHHHHHHHHHhh
Q 008658 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR----KSLVGDVSLLHKVFRLL 97 (558)
Q Consensus 22 ~~~wF~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r----~~l~gD~~~i~rvh~FL 97 (558)
+++.|+.+.+|+.|+.+|||+..+. ..+...|+.|||.|+.+|+.||..+||+.+|. |.+..|...|.+|++|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 4578999999999999999998652 12446899999999999999999999999995 44557899999999999
Q ss_pred hhhcccccccCCC
Q 008658 98 DEWGLINFGAVSR 110 (558)
Q Consensus 98 e~wGlIN~~~~~~ 110 (558)
.+||+||+++...
T Consensus 86 ~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 86 ERHGLINFGIYKR 98 (662)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCCccc
Confidence 9999999888753
No 33
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.45 E-value=1.8e-07 Score=78.30 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHH----cCCCCHHHHHHHHHc
Q 008658 252 ATWTEAETLLLLESVMRHG-DNWELVAQN----VPTKSKLDCISKLIE 294 (558)
Q Consensus 252 ~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~----vg~kt~~eC~~~fl~ 294 (558)
..||.+|+..|+++|++|| |+|.+|+++ +.+||..+|..+|..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrn 48 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 48 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHH
Confidence 3699999999999999999 799999996 788999999999975
No 34
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.44 E-value=3.4e-07 Score=105.08 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=75.5
Q ss_pred eeecCCCCCCCCC------------CCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhc
Q 008658 16 LYTIPSHSSWFRW------------DDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL 83 (558)
Q Consensus 16 ~iiIPs~~~wF~~------------~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l 83 (558)
...+..|-.||-. |.|+..|+.+||||..+ +.+|+.|||.|+.+|+.||...||...|++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~~~ 289 (776)
T 4gut_A 216 VPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIPHI 289 (776)
T ss_dssp --CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGGGC
T ss_pred ccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhhhc
Confidence 4456678888865 99999999999999754 57999999999999999999999999998876
Q ss_pred c-------chHHHHHHHHHhhhhhcccccccCC
Q 008658 84 V-------GDVSLLHKVFRLLDEWGLINFGAVS 109 (558)
Q Consensus 84 ~-------gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (558)
. .++..+.+|++||.++|+||+++..
T Consensus 290 ~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 290 IVRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred ccccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 3 3467789999999999999998864
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.40 E-value=3.9e-07 Score=81.85 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999754
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.37 E-value=4.1e-07 Score=82.16 Aligned_cols=45 Identities=16% Similarity=0.425 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
..+.||.+|+.+|++++..||.+|..||+++++||..+|..||..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999976
No 37
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.26 E-value=6.8e-07 Score=96.26 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||++|.+++++||.+||.||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999964
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.24 E-value=1e-06 Score=71.82 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcCCcCCCC
Q 008658 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEFM 301 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~~vg~kt~~eC~~~fl~LPIeD~~ 301 (558)
....||.+|+.+|..+|.+|+ +.|++||+++| ||.+||+.||..| .+|..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~~ 60 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSVT 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhcC
Confidence 356899999999999999997 56999999995 9999999999887 56643
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.22 E-value=1.6e-06 Score=70.27 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHH-cCCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~-vg~kt~~eC~~~fl~ 294 (558)
...||++|..++.+||.+||.||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46899999999999999999999999995 999999999999963
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.15 E-value=2.7e-06 Score=79.12 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+|+++|+.|| .+|..||+++++||..||..||..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999 589999999999999999999976
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.15 E-value=2.6e-06 Score=79.16 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
....||.+|+.+|++++..||..|..||++|++||..+|..||..|
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999764
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.15 E-value=2e-06 Score=76.83 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc----CCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~v----g~kt~~eC~~~fl~ 294 (558)
....||.+|+..|++||++|| |+|.+|+.+. ..||..+|..+|..
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrn 79 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 357899999999999999999 7999999985 68999999999976
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.13 E-value=2e-06 Score=74.89 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc----CCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~v----g~kt~~eC~~~fl~ 294 (558)
....||.+|+..|++||++|| |+|.+|+... ..||..+|..+|..
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 467899999999999999999 7999999976 57999999999975
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.12 E-value=3.8e-07 Score=73.92 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHH
Q 008658 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKL 292 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~~vg~kt~~eC~~~f 292 (558)
....||.+|..+|..||.+|+ +.|++||..||+||++||+.||
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 356899999999999999998 4799999999999999999998
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.11 E-value=3.5e-06 Score=72.09 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
...||++|..++.+++..||.+|..|+++|++||..||+.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999963
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.02 E-value=3e-06 Score=75.55 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc----CCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~v----g~kt~~eC~~~fl~ 294 (558)
....||.+|+..|+++|++|| |+|.+|+.+. ..||..+|..+|..
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrn 65 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 467899999999999999999 6999999995 67999999999975
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.84 E-value=1.7e-05 Score=62.38 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHH---HcCCCCHHHHHHHHHcC
Q 008658 250 HGATWTEAETLLLLESVMRHGDNWELVAQ---NVPTKSKLDCISKLIEL 295 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~---~vg~kt~~eC~~~fl~L 295 (558)
....||.+|+..|++||++||.+|.+|+. ++..||.-.--.+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999994 66679998888888653
No 48
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.63 E-value=3.7e-05 Score=89.09 Aligned_cols=86 Identities=26% Similarity=0.458 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHh----hhccchHHHHHHHHHhh
Q 008658 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR----KSLVGDVSLLHKVFRLL 97 (558)
Q Consensus 22 ~~~wF~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r----~~l~gD~~~i~rvh~FL 97 (558)
|.++|+.+.+|..|+.+||++-..- .....+|+.+||.|+..|+.||...++...|. |.+..|...|.+|++|+
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~~~ 256 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 256 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHHHH
Confidence 5689999999999999999986531 12356899999999999999999999987764 55567999999999999
Q ss_pred hhhcccccccCC
Q 008658 98 DEWGLINFGAVS 109 (558)
Q Consensus 98 e~wGlIN~~~~~ 109 (558)
.+||+||+++..
T Consensus 257 ~~~~~~~~~~~~ 268 (852)
T 2xag_A 257 ERHGLINFGIYK 268 (852)
T ss_dssp HHTTSSSCSSCB
T ss_pred HHHHHHhcCccc
Confidence 999999988875
No 49
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=0.0001 Score=58.32 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=40.2
Q ss_pred ccCCCCCCC-CCCceeeecC-CCcccchhhhhcCCC-CCCCCCCCceecc
Q 008658 196 FKCGSCGEQ-CNSGCYEYSK-GSFVICEKCFKNGNY-GEDKSKDDFRFSD 242 (558)
Q Consensus 196 ~~C~~C~~~-~~~~~y~~~k-~~~~lC~~Cf~~G~~-~~~~s~~df~~~~ 242 (558)
..|+.|+.. +...||+|.. .+++||..||..|.. ..|...|.|+.+.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 789999986 8889999999 899999999999975 4566788887753
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.38 E-value=0.00011 Score=72.13 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC------HHHHHHHcCCCCHHHHHHHHHc
Q 008658 250 HGATWTEAETLLLLESVMRHGDN------WELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g~~------W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
....||.+|+.+||+.+++||.. |..||+++.+||..+|..||..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 35689999999999999999853 9999999999999999999975
No 51
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.21 E-value=9.3e-05 Score=63.68 Aligned_cols=56 Identities=21% Similarity=0.646 Sum_probs=44.0
Q ss_pred cCCccCCCCCC-CCCCceeeecC-CCcccchhhhhcCCCCCCCCCCCceeccCCCCCCCCCCCCCHHH
Q 008658 193 LKGFKCGSCGE-QCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAE 258 (558)
Q Consensus 193 ~~~~~C~~C~~-~~~~~~y~~~k-~~~~lC~~Cf~~G~~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E 258 (558)
.....|+.|+. .+...||+|.. .+|+||..||..|. | ..|.|.++... ...|+..|
T Consensus 29 H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H-~~H~f~~i~~~------~~~w~~~e 86 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---H-LSHTFTFREKR------NQKWRSLE 86 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---G-GGSCEEECCSS------SCCCEECC
T ss_pred cCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---C-CCCCeeEecCC------CCCCcccc
Confidence 33478999997 58888999998 89999999999995 4 57899887653 23576543
No 52
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.03 E-value=0.00062 Score=56.64 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=43.5
Q ss_pred cCCccCCCCCC-CCCCceeeecC-CC---cccchhhhhcCCC-CCCCCCCCceeccCCC
Q 008658 193 LKGFKCGSCGE-QCNSGCYEYSK-GS---FVICEKCFKNGNY-GEDKSKDDFRFSDLGG 245 (558)
Q Consensus 193 ~~~~~C~~C~~-~~~~~~y~~~k-~~---~~lC~~Cf~~G~~-~~~~s~~df~~~~~~~ 245 (558)
...+.|+.|+. .+...||+|.. .+ |+||..||..|.. ..|...|.|..+....
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 34578999996 58889999998 77 9999999999975 4566789998887654
No 53
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=96.12 E-value=0.0022 Score=48.71 Aligned_cols=42 Identities=10% Similarity=0.423 Sum_probs=35.0
Q ss_pred CccCCCCCCCCCCceeeecC-CCcccchhhhhcCCCCCCCCCCCceecc
Q 008658 195 GFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k-~~~~lC~~Cf~~G~~~~~~s~~df~~~~ 242 (558)
.+.|+.|+..+ ..||+|.. .+|+||..||..|. | .|.+.++.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~---H--~H~m~~~~ 48 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS---H--THKMVKWG 48 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC---C--CSSEEEEC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC---C--CCceEEec
Confidence 47899999985 67999999 89999999999986 2 46776664
No 54
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.12 E-value=0.0072 Score=51.33 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHGDNWELVAQNV-----PTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~v-----g~kt~~eC~~~fl~ 294 (558)
...||.+|+..|++.+++|+-.|-.|++.. +.||-++-..+|..
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 378999999999999999999999999998 47999999999965
No 55
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=95.97 E-value=0.017 Score=50.34 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=60.4
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccc
Q 008658 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (558)
Q Consensus 27 ~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN 104 (558)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+. .++.++||+.+.-|++-..||++||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 3568899999887655 2379999999999999986543 39999999999999999999999999999996
No 56
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=95.92 E-value=0.015 Score=49.15 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=60.8
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccc
Q 008658 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (558)
Q Consensus 27 ~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN 104 (558)
+.+-+|+-|++-.-.. .=.|..|+.+...||.-+..+. .++.++||..+.-|++-..||++||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 4678899999988655 2379999999999999886653 38999999999999999999999999999996
No 57
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.83 E-value=0.0038 Score=51.91 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHcC----CCCHHHHHHHHHcC
Q 008658 251 GATWTEAETLLLLESVMRHG----------DNWELVAQNVP----TKSKLDCISKLIEL 295 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g----------~~W~~Ia~~vg----~kt~~eC~~~fl~L 295 (558)
...||.+|+++||++..... .-|+.||+.+. .||+.||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46799999999999996532 27999999876 69999999999663
No 58
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.80 E-value=0.008 Score=46.77 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-CCHHHHHH-HcCCCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRH--------G-DNWELVAQ-NVPTKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~--------g-~~W~~Ia~-~vg~kt~~eC~~~fl~ 294 (558)
...+|.+|+..|++.|..| | .-|+.+++ .+..+|-..|..||+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 3579999999999999999 4 37999999 8989999999999986
No 59
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.78 E-value=0.011 Score=49.75 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 252 ATWTEAETLLLLESVMRHG---DNWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 252 ~~Wt~~E~~~LLe~Ie~~g---~~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
--||.+|+..+|...++-| .-|..||+.+|+||+.|...||-+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4699999999999999998 5999999999999999999999763
No 60
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.032 Score=46.88 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=60.3
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccc
Q 008658 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (558)
Q Consensus 27 ~~~~ih~iE~~~~peff~~~~~~ktp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlI 103 (558)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+ ...++.++||..+.-|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 5678899999887655 237999999999999988764 346899999999999999999999999999987
No 61
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.29 E-value=0.003 Score=68.18 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcCCcCCC
Q 008658 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEF 300 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg~kt~~eC~~~fl~LPIeD~ 300 (558)
...||.+|..++.+++..||.||..|+++|++||..+|+.+|..---...
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~~ 238 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRT 238 (482)
T ss_dssp --------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcccccccc
Confidence 45899999999999999999999999999999999999999975443333
No 62
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.00 E-value=0.021 Score=58.30 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHH
Q 008658 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKL 292 (558)
Q Consensus 252 ~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg~kt~~eC~~~f 292 (558)
..||..+-..++.|+++|| ++|..||..|++||++|...++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4799999999999999999 8999999999999999996555
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.15 E-value=0.0089 Score=47.60 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHHHcCCCCHHHHHHHHHcC
Q 008658 252 ATWTEAETLLLLESVMRHGD---NWELVAQNVPTKSKLDCISKLIEL 295 (558)
Q Consensus 252 ~~Wt~~E~~~LLe~Ie~~g~---~W~~Ia~~vg~kt~~eC~~~fl~L 295 (558)
--||.+|+..+|...++-|. -|..||+.+ +||++|...+|.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 46999999999999999994 999999999 79999999999875
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.91 E-value=0.16 Score=43.05 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcC-----CCCHHHHHHHHHc
Q 008658 251 GATWTEAETLLLLESVMRHGDNWELVAQNVP-----TKSKLDCISKLIE 294 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~~W~~Ia~~vg-----~kt~~eC~~~fl~ 294 (558)
+..||.+|+..|++.+++|+-.|--|++... .||-++-..||.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999998764 6999999999975
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.79 E-value=0.15 Score=51.15 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 008658 249 THGATWTEAETLLLLESVMRHG-DNWELVAQN 279 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~ 279 (558)
.....|+.+|+..||-||.+|| |+|..|..-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 4567899999999999999999 999999753
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.33 E-value=0.19 Score=48.08 Aligned_cols=30 Identities=20% Similarity=0.556 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 008658 250 HGATWTEAETLLLLESVMRHG-DNWELVAQN 279 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~ 279 (558)
....||.+|+..||-||.+|| |+|+.|-.-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 356799999999999999999 999998764
No 67
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.70 E-value=0.74 Score=36.31 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHHHcC--CCCHHHHHHHH
Q 008658 251 GATWTEAETLLLLESVMRHGDN---WELVAQNVP--TKSKLDCISKL 292 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g~~---W~~Ia~~vg--~kt~~eC~~~f 292 (558)
.-.||.+....+++||+..|.+ |..|-+.++ +-|.+++..|.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 5689999999999999999955 899999988 46999988875
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.54 E-value=0.57 Score=44.66 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHHHcC--CCCHHHHHHH
Q 008658 251 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISK 291 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g---~~W~~Ia~~vg--~kt~~eC~~~ 291 (558)
-..||..|...|+.++.+|| +.|+.|++... .||.++....
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y 52 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRL 52 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHH
Confidence 46899999999999999999 68999998765 7898887653
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=81.95 E-value=1.4 Score=46.06 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHHc
Q 008658 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLIE 294 (558)
Q Consensus 252 ~~Wt~~E~~~LLe~Ie~~g-~~W~~Ia~~vg-~kt~~eC~~~fl~ 294 (558)
..||..+-..++.|.++|| +|-..||..|+ +||++|.. .|.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~ 167 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAK 167 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHH
Confidence 4799999999999999999 89999999998 89999988 5554
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=81.52 E-value=1.1 Score=45.54 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC----CCHHHHHH------------HcCCCCHHHHHHHHHcC
Q 008658 249 THGATWTEAETLLLLESVMRHG----DNWELVAQ------------NVPTKSKLDCISKLIEL 295 (558)
Q Consensus 249 ~~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~------------~vg~kt~~eC~~~fl~L 295 (558)
..+..||.+|+..||-+|.+|| |+|+.|-. ++-+||+.++..|.-.|
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 3567899999999999999999 69999963 55689999988887543
No 71
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.34 E-value=40 Score=37.25 Aligned_cols=59 Identities=15% Similarity=0.311 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008658 492 REIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVLERALKTGV 553 (558)
Q Consensus 492 reI~~Lv~~lIe~QlkKLElKLk~feeLE~~me~Er~~LE~~Rq~L~~eR~~~~~~~~~~g~ 553 (558)
++.++-....++.|-+-.+..++++.+ -||+||+++-+..+..+..|+.....-++.|+
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 565 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQEQEQLLKEGF 565 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777666665544 79999999999999999999999888888875
No 72
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=59.23 E-value=7.7 Score=30.67 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhc-----cchHHHHHHHHHhhhhhccccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFGA 107 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l-----~gD~~~i~rvh~FLe~wGlIN~~~ 107 (558)
-|-.|++.....+...+|+.+.-..+ .-+...|.|....|+..|+|.-..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 45677776654432689999988877 347899999999999999997443
No 73
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=58.67 E-value=11 Score=29.16 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccc
Q 008658 52 PKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (558)
Q Consensus 52 p~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN 104 (558)
|..-...|..|++....++ .+++.++.-+.+.-.-..+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~~-~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDG-GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHHC-SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 3333347889999887643 579999999999888999999999999999985
No 74
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.34 E-value=88 Score=26.14 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008658 500 IIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVL 545 (558)
Q Consensus 500 ~lIe~QlkKLElKLk~feeLE~~me~Er~~LE~~Rq~L~~eR~~~~ 545 (558)
..|+.+|+.++..+..++.-|..+.+++..+.++.-.+-.+|.++-
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999887764
No 75
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=55.95 E-value=10 Score=39.66 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHH------------cCCCCHHHHHHHHHcC
Q 008658 250 HGATWTEAETLLLLESVMRHG----DNWELVAQN------------VPTKSKLDCISKLIEL 295 (558)
Q Consensus 250 ~~~~Wt~~E~~~LLe~Ie~~g----~~W~~Ia~~------------vg~kt~~eC~~~fl~L 295 (558)
.+..||.+|+..||=+|.+|| |+|+.|-.. +.+||+.++..|.-.|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 467899999999999999999 689999543 3489999988777543
No 76
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=55.74 E-value=25 Score=27.67 Aligned_cols=47 Identities=9% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008658 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (558)
Q Consensus 59 Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (558)
|..|+.....++ .+|..+..+.+.-....+.|....|+..|+|-...
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 677888766653 48999999988778899999999999999997543
No 77
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.63 E-value=17 Score=31.81 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhc-----cchHHHHHHHHHhhhhhcccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l-----~gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
-|-.|++....++...+|+.+.-..| .-+...|.|...+|...|||.--
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 57788887775543789999987777 23789999999999999999833
No 78
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.58 E-value=1.2e+02 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 008658 522 IMEKEYNEMMQLKECLVEERIDVLERALKTGVSK 555 (558)
Q Consensus 522 ~me~Er~~LE~~Rq~L~~eR~~~~~~~~~~g~~~ 555 (558)
-+..-.+++...|++|..+|+.+..+..+.|||.
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445566788899999999999999988889984
No 79
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.17 E-value=25 Score=30.56 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHhCCCceeeHHHHhhhc-----cchHHHHHHHHHhhhhhcccccccC
Q 008658 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFGAV 108 (558)
Q Consensus 54 ~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l-----~gD~~~i~rvh~FLe~wGlIN~~~~ 108 (558)
+.-.-|-.|++..... ...+|+.+.-..| .-+...+.|...+|...|||.=-..
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 4456788899887754 5789999987777 2378999999999999999984433
No 80
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=43.42 E-value=14 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=28.1
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhc
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~ 226 (558)
.+.|+.|+.......|+|..-+|.|-..|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCC
Confidence 57899999998878899999999999999754
No 81
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.00 E-value=28 Score=31.12 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhcccccc
Q 008658 55 YKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 55 Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
.-.-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|...|||.=-
T Consensus 25 ~T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 25 NSKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp CHHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 3446778888887664 5999999877762 3789999999999999999843
No 82
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.78 E-value=20 Score=32.11 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~ 105 (558)
-|-.|++....++...+|+.+.-..|. -+...|.|...+|...|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 577788876654327899999877772 378999999999999999973
No 83
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.07 E-value=46 Score=28.83 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCCh---hhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008658 49 SRTP---KIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (558)
Q Consensus 49 ~ktp---~~Y~~~Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (558)
++.| ++|-.||+.|++ =...|...| +..+....+.--...+.+.+.-|+.-|||-...
T Consensus 11 s~~PlY~QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 4555 456666666665 234789999 888888888767899999999999999997543
No 84
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=38.78 E-value=16 Score=28.92 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=23.1
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcC
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNG 227 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G 227 (558)
...|++||+.-..+.---.-++..+|..|....
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 367999999876654333335677999997654
No 85
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.98 E-value=26 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCC
Q 008658 256 EAETLLLLESVMRHGDNWELVAQNVPT 282 (558)
Q Consensus 256 ~~E~~~LLe~Ie~~g~~W~~Ia~~vg~ 282 (558)
.-|...+.++++.+++|+..+|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 346678899999999999999999994
No 86
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.95 E-value=38 Score=29.90 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhccccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFGA 107 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~~~ 107 (558)
-|-.|++..... ...+|+.+.-..|. -+...|.|...+|...|||.--.
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence 567788877654 56899999877762 36899999999999999997433
No 87
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=36.58 E-value=21 Score=28.80 Aligned_cols=30 Identities=20% Similarity=0.574 Sum_probs=20.5
Q ss_pred eeeecC----CCcccchhhhhcCCCCCCCCCCCceecc
Q 008658 209 CYEYSK----GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (558)
Q Consensus 209 ~y~~~k----~~~~lC~~Cf~~G~~~~~~s~~df~~~~ 242 (558)
.|+|.. ....||.+||.++. +..|+|.+..
T Consensus 17 ~Y~C~~C~~d~tc~lC~~CF~~~~----H~gH~~~~~~ 50 (75)
T 3ny3_A 17 TYSCRDCAVDPTCVLCMECFLGSI----HRDHRYRMTT 50 (75)
T ss_dssp EEEETTTBSSTTCCBCHHHHHTSG----GGGSCEEEEE
T ss_pred EEECccCCCCCCeeEChHHCCCCC----cCCceEEEEE
Confidence 455544 45679999999886 2457777654
No 88
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=35.43 E-value=25 Score=28.81 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=21.0
Q ss_pred eeeecC----CCcccchhhhhcCCCCCCCCCCCceecc
Q 008658 209 CYEYSK----GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (558)
Q Consensus 209 ~y~~~k----~~~~lC~~Cf~~G~~~~~~s~~df~~~~ 242 (558)
.|+|.. +...||..||..+. +..|+|.+..
T Consensus 21 ~Y~C~~C~~d~tcvlC~~CF~~s~----H~gH~~~~~~ 54 (82)
T 3nis_A 21 LYRCHECGCDDTCVLCIHCFNPKD----HVNHHVCTDI 54 (82)
T ss_dssp EEEETTTBSSTTCCBCTTTCCGGG----GTTSCEEEEE
T ss_pred EEEeeccCCCCCceEchhhCCCCC----cCCceEEEEE
Confidence 466654 45679999998886 3457787654
No 89
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.20 E-value=47 Score=27.97 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008658 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 52 p~~Y~~~Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
-++|-.||+.|++- ...|...| |..+..+.+.---..+.+...-|+..|||-..
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45677777777662 33688899 89888888876689999999999999999643
No 90
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=34.77 E-value=21 Score=26.71 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=21.6
Q ss_pred ccCCCCCCCCCCceeeecCCCcccchhhhhc
Q 008658 196 FKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (558)
Q Consensus 196 ~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~ 226 (558)
..|++||+.-..+.---.-++..+|..|...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 5799999987665433333567799999653
No 91
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=34.48 E-value=54 Score=32.63 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHHHcC--CCCHHHHHHHH
Q 008658 251 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISKL 292 (558)
Q Consensus 251 ~~~Wt~~E~~~LLe~Ie~~g---~~W~~Ia~~vg--~kt~~eC~~~f 292 (558)
.+.||+.|...|+.+|.+|| +.|+.|+.--. .|+.+....-|
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 46799999999999999999 58999986533 57776544433
No 92
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.31 E-value=61 Score=28.42 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhcccccc
Q 008658 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 54 ~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
++-.-|..|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.--
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45567888999776654 6999999877763 3789999999999999999743
No 93
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=34.05 E-value=94 Score=29.94 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCC
Q 008658 516 FDDLELIMEKEYNEMM----QLKECLVEERIDVLERALKTGVSK 555 (558)
Q Consensus 516 feeLE~~me~Er~~LE----~~Rq~L~~eR~~~~~~~~~~g~~~ 555 (558)
++.||.-+.+|..+|| ++++-||..|..++ .|||.
T Consensus 42 ~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII-----~~IP~ 80 (225)
T 2e50_A 42 IDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI-----AKIPN 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----hcccc
Confidence 3444544555555554 55777899998888 37764
No 94
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=33.28 E-value=48 Score=29.72 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=36.5
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLL 263 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~LL 263 (558)
-..|.-||.. .+.+-+..-++.+|.+|-.--+ +|.+ .+++- . .-+.||.++...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n~GvfiC~~CsgiHR~LG~~----s~VrS--l-----~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMTVGSFVCTSCSGSLRGLNPP----HRVKS--I-----SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETTTTEEECHHHHHHHTTSSSC----CCEEE--T-----TTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeeccCEEEchhccchhccCCCc----ceeee--c-----CCCCCCHHHHHHHH
Confidence 3568888864 5667777788999999987554 3432 24432 1 12469998876554
No 95
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=32.56 E-value=69 Score=27.29 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCC
Q 008658 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (558)
Q Consensus 59 Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (558)
+-.|+..-..+|..++|+.+....+.-+...+.|...-|+..|+|--...+
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 334555444566555999999999988999999999999999999865443
No 96
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.97 E-value=39 Score=29.91 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~ 105 (558)
-|..|++....++ .+|+.+.-..|. -+...|.|...+|..-|||.-
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4667777666654 899998766552 378999999999999999974
No 97
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=30.67 E-value=57 Score=29.20 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=36.4
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~L 262 (558)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ +|.|.+ |++- . .-+.||.++...|
T Consensus 36 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS---~VrS--l-----~lD~w~~~~l~~m 92 (138)
T 2owa_A 36 NRTCFDCESR--NPTWLSLSFAVFICLNCSSDHRKMGVHIS---FVRS--S-----DLDKFTPIQLVRM 92 (138)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHTTCTTTC---CEEE--T-----TTSCCCHHHHHHH
T ss_pred CCcCCCCcCC--CCCeEEecCCEEEhHhhhHHHhCCCCCCC---eeee--c-----CcCcCCHHHHHHH
Confidence 3578888865 4667777788899999986553 455543 3332 1 1246999886544
No 98
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=30.54 E-value=75 Score=27.36 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccc
Q 008658 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (558)
Q Consensus 52 p~~Y~~~Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~ 105 (558)
-.+|-.||+.|+.. ...|...| +..+..+.+.--...+.+...-|+..|||-.
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35677777777653 23688999 9999888887678999999999999999953
No 99
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=30.22 E-value=48 Score=30.61 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=36.5
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~L 262 (558)
-..|.-|+.. .+.+-+..-++.||.+|-.--+ ++.|.+ +++ .. .-+.||.++...|
T Consensus 22 N~~CaDCga~--~P~WaS~nlGvflCi~CSGiHR~LG~hIS---kVK--Sl-----tLD~Wt~e~l~~m 78 (163)
T 3sub_A 22 NNKCFDCGIS--NPDWVSVNHGIFLCINCSGVHRSLGVHIS---IVR--SI-----KMDIFTDEQLKYI 78 (163)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHHTCTTTC---CEE--ET-----TTCCCCHHHHHHH
T ss_pred CCccccCCCC--CCCeEEecCCeeEHHhhhHHhcCCCCCCC---eee--ec-----cccCcCHHHHHHH
Confidence 4579888875 4667777788999999976553 454432 222 21 1247999886544
No 100
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=28.77 E-value=53 Score=28.56 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008658 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 52 p~~Y~~~Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
-.+|-.||+.|+.- ...|...| +..+..+.+.---..+.+...-|+..|||-..
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 46788888888764 44688999 89998888876789999999999999999643
No 101
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.75 E-value=49 Score=30.10 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=35.4
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~L 262 (558)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ ++.|.+ |++ .. ..+..||.++...|
T Consensus 29 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS---~Vr--Sl----~LD~~W~~~~l~~m 86 (149)
T 2crw_A 29 NKVCFDCGAK--NPSWASITYGVFLCIDCSGSHRSLGVHLS---FIR--ST----ELDSNWSWFQLRCM 86 (149)
T ss_dssp TSBCSSSCCB--SCCCEETTTTEECCHHHHHHHHHHCTTTC---CEE--CS----SSCCCCCHHHHHHH
T ss_pred CCcCCCCcCC--CCCcEEeccCEEEchhcchhhccCCCCCC---eee--cc----ccCCCCCHHHHHHH
Confidence 4578888764 4566777788899999986543 454432 232 11 12335998775544
No 102
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.15 E-value=40 Score=30.32 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=35.9
Q ss_pred ccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHH
Q 008658 196 FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLL 263 (558)
Q Consensus 196 ~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~LL 263 (558)
..|.-|+.. .+.+-+..-++.+|.+|-.--+ +|.|.+ + +... .-+.||.+|...|.
T Consensus 30 ~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS---~--VkSl-----~ld~w~~~~l~~m~ 86 (141)
T 2crr_A 30 KYCADCEAK--GPRWASWNIGVFICIRCAGIHRNLGVHIS---R--VKSV-----NLDQWTAEQIQCMQ 86 (141)
T ss_dssp SSCSSSCCS--SCCSEETTTTEECCHHHHHHHHHHCTTTC---C--CBCS-----SSSCCCHHHHHHHH
T ss_pred CcCCCCCCC--CCCeEEeccCeEEhhhhhHhHhcCCCCCC---e--eeEC-----CCCCCCHHHHHHHH
Confidence 568888765 4566777788899999976543 454432 1 2221 12479998776554
No 103
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=27.21 E-value=50 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhHH-HHHHHHHHHHH
Q 008658 504 TQMKKLHSKINYFD-DLELIMEKEYN 528 (558)
Q Consensus 504 ~QlkKLElKLk~fe-eLE~~me~Er~ 528 (558)
.|||.=-.||+++. .+|.++++|++
T Consensus 12 L~LK~QRDkL~qyqkri~~~~~rE~e 37 (39)
T 3htu_B 12 LQLKQQRDKLRQYQKRIAQQLERERA 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 46777788899988 89999999876
No 104
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.02 E-value=62 Score=29.27 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-------chHHHHHHHHHhhhhhccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLV-------GDVSLLHKVFRLLDEWGLINF 105 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~-------gD~~~i~rvh~FLe~wGlIN~ 105 (558)
-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 34 qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 34 QREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 5778888766654 8999999865552 258899999999999999973
No 105
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=26.44 E-value=96 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred ceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCC
Q 008658 72 RRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (558)
Q Consensus 72 ~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (558)
..+|+++..+.+.-+...+.|+..-|+..|+|.....+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 45999999998888999999999999999999876554
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.36 E-value=34 Score=28.55 Aligned_cols=46 Identities=22% Similarity=0.505 Sum_probs=31.5
Q ss_pred CccCCCCCCCCCC-----ceeeecCCCcccchhhhh----cCCCCCCCCCCCcee
Q 008658 195 GFKCGSCGEQCNS-----GCYEYSKGSFVICEKCFK----NGNYGEDKSKDDFRF 240 (558)
Q Consensus 195 ~~~C~~C~~~~~~-----~~y~~~k~~~~lC~~Cf~----~G~~~~~~s~~df~~ 240 (558)
...|.+||.++.. +++.|..-.|-+|-.||. +|+.--..-+..|.+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4689999998753 577888888999999986 444322233445554
No 107
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.74 E-value=1e+02 Score=24.22 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=30.0
Q ss_pred CccCCCCCCCCCCceeeecC-CCcccchhhhhcCCCCCCCCCCCcee
Q 008658 195 GFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRF 240 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k-~~~~lC~~Cf~~G~~~~~~s~~df~~ 240 (558)
.+-|.+|..+- .++|.- .+-.-|..||.+++.......|..++
T Consensus 8 ~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~ 51 (67)
T 2d8v_A 8 LPWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSP 51 (67)
T ss_dssp CSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEEC
T ss_pred CCeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceee
Confidence 46799998884 478877 45578999999998544444444333
No 108
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=25.70 E-value=48 Score=29.99 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=35.5
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~L 262 (558)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ +|.+.+ |++- . ..+..||.+|...|
T Consensus 37 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hIS---~VrS--l----~LD~~W~~~~l~~m 94 (144)
T 2p57_A 37 NKACFDCGAK--NPSWASITYGVFLCIDCSGVHRSLGVHLS---FIRS--T----ELDSNWNWFQLRCM 94 (144)
T ss_dssp GGBCTTTCCB--SCCEEEGGGTEEECHHHHHHHHHHCTTTC---CEEE--S----SSCCCCCHHHHHHH
T ss_pred CCcCCCCcCC--CCCeEEeccCEEEhhhchHHHcCCCCCCC---eeee--c----ccCCCCCHHHHHHH
Confidence 3578888864 4666777778889999976543 454432 2321 1 12335998776554
No 109
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.54 E-value=2.8e+02 Score=22.75 Aligned_cols=53 Identities=11% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008658 479 AAANAKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKE 535 (558)
Q Consensus 479 AA~kAk~LA~~EEreI~~Lv~~lIe~QlkKLElKLk~feeLE~~me~Er~~LE~~Rq 535 (558)
+|.-...|-.+|..++..|=..| +..|+--.+.+++||..+++-+..+.....
T Consensus 27 aA~Ee~YfrqkekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555555555544444 455666677777888877777776665543
No 110
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=24.77 E-value=1.1e+02 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccC
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~ 108 (558)
.|-.|+...... .+|+++..+.+.-+-..+.|...-|+..|||....+
T Consensus 22 ~r~~IL~~L~~~---~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTELGRA---DQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHHHS---CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 566777766333 389999999997789999999999999999986544
No 111
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=24.51 E-value=63 Score=28.75 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=36.0
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~L 262 (558)
-..|.-|+.. .+.+-+..-++.+|..|-.--+ +|.|.+ +++ .. .-+.||.+|...|
T Consensus 27 N~~CaDCg~~--~P~WaS~n~GvfiC~~CsgiHR~lG~hiS---~Vk--Sl-----~ld~w~~~~l~~m 83 (134)
T 2iqj_A 27 NKFCADCQSK--GPRWASWNIGVFICIRCAGIHRNLGVHIS---RVK--SV-----NLDQWTQEQIQCM 83 (134)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHHHCTTTC---CEE--ET-----TTSCCCHHHHHHH
T ss_pred CCcCCcCcCC--CCCeEEecCCEEEhHhhhHHHhcCCCCCC---cee--ec-----cccCCCHHHHHHH
Confidence 3568888765 4667777788999999976543 454432 232 21 1247999877555
No 112
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=24.28 E-value=1e+02 Score=25.65 Aligned_cols=42 Identities=2% Similarity=0.038 Sum_probs=33.5
Q ss_pred HHHHhCCCceeeHHHHhhhccch----HHHHHHHHHhhhhhcccccccC
Q 008658 64 NKYREEPSRRLTFTQVRKSLVGD----VSLLHKVFRLLDEWGLINFGAV 108 (558)
Q Consensus 64 ~~y~~np~~~lt~t~~r~~l~gD----~~~i~rvh~FLe~wGlIN~~~~ 108 (558)
-.|... .+|+.+..+.|..| ...+.|+.+.|+.-|||--..+
T Consensus 43 ~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 43 VIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp HHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 346533 58999999998754 6899999999999999975443
No 113
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.15 E-value=55 Score=27.34 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=49.6
Q ss_pred CHHHHhhcccccCCCCCCCChhhHHHH--HHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008658 32 HETERTALKEFFDGSSISRTPKIYKEY--RDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (558)
Q Consensus 32 h~iE~~~~peff~~~~~~ktp~~Y~~~--Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (558)
|+.|+..-+.-. ...+|..+ |+.|+..| .|...| +..+..+.+.--...+.+...-|+.-|||-...
T Consensus 8 ~~~~~~~~~~~~-------~~~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 8 HHMSKAVVQMAI-------SSLSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp THHHHHHHHHHH-------HTSCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCccccccccch-------hHHHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 555555444332 23578888 99999443 567777 999988888666789999999999999997654
No 114
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=23.62 E-value=1.2e+02 Score=25.67 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008658 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (558)
Q Consensus 51 tp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (558)
|+..|..++ .|+.... ....+|+++..+.+.-+..++.|+..-|+..|||....
T Consensus 12 t~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 12 SRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 566665555 3444333 34679999999999889999999999999999998643
No 115
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.48 E-value=74 Score=27.25 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008658 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 52 p~~Y~~~Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
-++|-.||+.|++ -..-|...| |..+..+.+.--...+.+.+.-|+.-|+|--.
T Consensus 16 ~~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 16 SQISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3566666666665 233688889 58888888866789999999999999999643
No 116
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=23.26 E-value=1.2e+02 Score=29.67 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=21.2
Q ss_pred CHHHHHHHcCCCCHHHHHHHHHc
Q 008658 272 NWELVAQNVPTKSKLDCISKLIE 294 (558)
Q Consensus 272 ~W~~Ia~~vg~kt~~eC~~~fl~ 294 (558)
-|..||++...+|...-..+|..
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrK 195 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRK 195 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHH
Confidence 69999999999999999999974
No 117
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=23.15 E-value=1.2e+02 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHhhhccc-hHHHHHHHHHhhhhhcccc
Q 008658 57 EYRDFMINKYREEPSRRLTFTQVRKSLVG-DVSLLHKVFRLLDEWGLIN 104 (558)
Q Consensus 57 ~~Rn~ii~~y~~np~~~lt~t~~r~~l~g-D~~~i~rvh~FLe~wGlIN 104 (558)
-.++ .|+.|...|...+++.++...|.. .--=|.-|..-||..|||-
T Consensus 15 lt~k-Fi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 15 LTTK-FVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHH-HHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHH-HHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 3444 456788899999999999999987 6666666777889999986
No 118
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=22.10 E-value=87 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.1
Q ss_pred hCCCceeeHHHHhh-hccchHHHHHHHHHhhhhhcccc
Q 008658 68 EEPSRRLTFTQVRK-SLVGDVSLLHKVFRLLDEWGLIN 104 (558)
Q Consensus 68 ~np~~~lt~t~~r~-~l~gD~~~i~rvh~FLe~wGlIN 104 (558)
.+| +.|.++... .+.-|...+.|=...|++-|||=
T Consensus 27 ~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 27 KKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 366 999999999 88889999999999999999997
No 119
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=22.10 E-value=54 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.364 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhcccccccC
Q 008658 87 VSLLHKVFRLLDEWGLINFGAV 108 (558)
Q Consensus 87 ~~~i~rvh~FLe~wGlIN~~~~ 108 (558)
...+..++.|.-.||+|...+.
T Consensus 76 ~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 76 LRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHcCccccCch
Confidence 4567788889999999975444
No 120
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=22.05 E-value=1.1e+02 Score=24.99 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----ch-------HHHHHHHHHhhhhhccccc
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GD-------VSLLHKVFRLLDEWGLINF 105 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~-----gD-------~~~i~rvh~FLe~wGlIN~ 105 (558)
++++|+..+-.-|-..||..+++..+. |- ...|..|+.|.-.||+|..
T Consensus 34 l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~ 93 (118)
T 2kj8_A 34 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 93 (118)
T ss_dssp HHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 344555555556777889888876552 21 2456677888888998864
No 121
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=21.98 E-value=5e+02 Score=24.40 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008658 466 LRIRTATATALGAAAANAKLLADQEDREIEHLVAIIIETQMKKLHSKINY-FDDLELIMEKEYN-EMMQLKECLVEERID 543 (558)
Q Consensus 466 ~~v~~Aaa~AL~aAA~kAk~LA~~EEreI~~Lv~~lIe~QlkKLElKLk~-feeLE~~me~Er~-~LE~~Rq~L~~eR~~ 543 (558)
.+++...+--+.-|-.||...-..-+.|-+.....+|+.+-+|++.-+.. ..++|..-.+.+- .+-+.|..++..|..
T Consensus 15 ~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e 94 (233)
T 4efa_E 15 DELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQ 94 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777788888888888877777777777777887776665432211 1122222222222 222455666666665
Q ss_pred HHHHHHh
Q 008658 544 VLERALK 550 (558)
Q Consensus 544 ~~~~~~~ 550 (558)
++...+.
T Consensus 95 ~i~~v~~ 101 (233)
T 4efa_E 95 SLDGIFE 101 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 122
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=21.74 E-value=1.4e+02 Score=23.45 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccC
Q 008658 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (558)
Q Consensus 58 ~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~ 108 (558)
.|-.|+..... ...+|+++..+.+.-+...+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 45567765443 34689999999997789999999999999999987654
No 123
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.68 E-value=1.5e+02 Score=23.22 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHhCC-CceeeHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008658 54 IYKEYRDFMINKYREEP-SRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (558)
Q Consensus 54 ~Y~~~Rn~ii~~y~~np-~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (558)
+.-+....|+...+.|+ ..++|+.+..+.|.-+...|.|...=|++-|+|-..
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 33445677888888887 779999999999987889999999999999999654
No 124
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.30 E-value=94 Score=26.75 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCC
Q 008658 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (558)
Q Consensus 69 np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (558)
.+..++|..+..+.+.-+...+.|+.+.|+.-|+|-...++
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 35567899999999988999999999999999999877665
No 125
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.01 E-value=3.8e+02 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008658 518 DLELIMEKEYNEMMQLKECLVEERIDV 544 (558)
Q Consensus 518 eLE~~me~Er~~LE~~Rq~L~~eR~~~ 544 (558)
+||..++..++.+++.+|++-.-|..+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444333
No 126
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.85 E-value=31 Score=28.33 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccc
Q 008658 51 TPKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (558)
Q Consensus 51 tp~~Y~~~Rn~ii~~y~~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~ 105 (558)
.-.+|-.+|..|+... ..|...| |..+..+.+.--...+.+...-|+..|||-.
T Consensus 13 ~~~l~~~i~~~I~~~~-l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 13 YADVATHFRTLIKSGE-LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHHHHHHHTTTTS-CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHHHHHHHhCC-CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4467777777777622 3577888 9999888887678899999999999999963
No 127
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.39 E-value=1.8e+02 Score=24.39 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=36.9
Q ss_pred CCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCCC
Q 008658 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (558)
Q Consensus 69 np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~~ 110 (558)
++...+|.++..+.+.-+-.++.|+..=|+..|||....++.
T Consensus 49 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 49 NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSS
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 444679999999999889999999999999999999877763
No 128
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=20.29 E-value=1.4e+02 Score=25.30 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccc
Q 008658 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (558)
Q Consensus 51 tp~~Y~~~Rn~ii~~y~~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlI 103 (558)
.++.|-++++.|.+....+ ..+|+.+.|..+.----...=|..||++.|+.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 60 RNDRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 5899999999999988876 78999999999942223333688899999975
No 129
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=20.28 E-value=74 Score=28.88 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=34.9
Q ss_pred CccCCCCCCCCCCceeeecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008658 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (558)
Q Consensus 195 ~~~C~~C~~~~~~~~y~~~k~~~~lC~~Cf~~G~-~~~~~s~~df~~~~~~~~~~~~~~~Wt~~E~~~L 262 (558)
-..|.-|+.. .+.+-+..-++.||.+|-.--+ ++.+.+ +++ .. .-+.||.+|...|
T Consensus 38 N~~CaDCga~--~P~WaS~nlGvfiC~~CSgiHR~LG~hIS---kVk--Sl-----~LD~W~~~el~~m 94 (147)
T 3dwd_A 38 NNVCFECGAF--NPQWVSVTYGIWICLECSGRHRGLGVHLS---FVR--SV-----TMDKWKDIELEKM 94 (147)
T ss_dssp TTBCTTTCCB--SCCEEETTTTEEECHHHHHHHHHHCTTTC---CEE--ES-----CC--CCHHHHHHH
T ss_pred CCccCCCCCC--CCCeEEecccEeEhHhhChHHhcCCCCCC---ccc--cc-----cccCCCHHHHHHH
Confidence 3568888875 4666777788999999976543 344432 222 21 1246999886654
Done!