Query 008659
Match_columns 558
No_of_seqs 255 out of 608
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 14:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 3E-154 7E-159 1286.5 42.5 487 68-558 82-576 (918)
2 PLN02264 lipoxygenase 100.0 2E-153 4E-158 1280.3 38.5 486 68-558 85-578 (919)
3 PLN02337 lipoxygenase 100.0 2E-152 4E-157 1275.6 40.1 487 55-558 19-522 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 7E-106 2E-110 895.7 13.2 340 214-558 1-342 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 3.4E-39 7.5E-44 297.5 14.5 131 69-205 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.3 1.6E-11 3.5E-16 107.3 10.1 82 103-192 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.9 5.6E-09 1.2E-13 91.4 7.8 65 139-203 45-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.7 1.4E-07 3E-12 83.8 11.2 64 139-202 48-115 (116)
9 cd02899 PLAT_SR Scavenger rece 98.3 2.4E-06 5.2E-11 76.9 8.2 76 103-192 20-98 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.9 6.8E-05 1.5E-09 67.6 10.1 83 103-193 20-105 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.9 0.00018 3.9E-09 65.1 11.8 87 102-195 19-109 (120)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.7 9.1E-05 2E-09 67.3 6.9 54 141-195 43-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.6 0.00053 1.2E-08 62.1 10.5 86 103-195 20-109 (120)
14 cd01754 PLAT_plant_stress PLAT 97.2 0.00077 1.7E-08 62.5 6.8 54 140-195 59-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 54.2 68 0.0015 29.2 7.9 50 139-188 46-105 (120)
16 KOG2080 Uncharacterized conser 53.2 12 0.00025 44.7 3.3 53 141-194 1013-1069(1295)
17 TIGR03124 ctirate_citX holo-AC 25.2 70 0.0015 31.1 3.2 54 207-277 81-134 (165)
18 PF11248 DUF3046: Protein of u 24.8 28 0.00061 28.9 0.3 23 440-463 21-43 (63)
19 KOG3381 Uncharacterized conser 21.3 43 0.00093 32.4 0.9 45 418-464 104-148 (161)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=3.4e-154 Score=1286.50 Aligned_cols=487 Identities=47% Similarity=0.864 Sum_probs=451.7
Q ss_pred eEEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc---eeccccccccCCCCCCceEEEEE
Q 008659 68 IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK---STIQDYARKIGADGDGNMQYESE 144 (558)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~~---~~l~~~~~~~~~~~~~~~~y~~~ 144 (558)
.+++++++++++++..++.. .++++|.++|++|++|+|||||++++++||+|| ++|++|+++ ....+++++|+++
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~-~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~~~~~~~~~ 159 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEK-FEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDPHIVEYAAD 159 (918)
T ss_pred CeEEEEEEEEeecccchhhc-ccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCCCceEEEEE
Confidence 67888888888776655553 257899999999999999999999999999665 899999986 3432667899999
Q ss_pred EEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeCCccccCCCCCCCeEEeeceecccCCCcHHHHHHHHHH
Q 008659 145 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 224 (558)
Q Consensus 145 f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~RifF~nkayLP~~tP~~L~~~Re~E 224 (558)
|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+||||||++++|+.+||||+||+|||++||++|++|||+|
T Consensus 160 f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~e 239 (918)
T PLN02305 160 FTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRED 239 (918)
T ss_pred EeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCccccCCCCCCCCCCCcccccC---CCccCCC
Q 008659 225 LTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRD 301 (558)
Q Consensus 225 L~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~~~~dp~se~r~~---~~yvPrD 301 (558)
|++|||||+||||+||||||||||||||+||++++++||||||.+|||||||||||+|+++||.+|+|.. .+|||||
T Consensus 240 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrD 319 (918)
T PLN02305 240 LLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRD 319 (918)
T ss_pred HHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999669999999999999999999999954 4799999
Q ss_pred CccChhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCcccccchhchh--hHHHHhhhccC
Q 008659 302 EAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLL--PRLVKAIEDTG 379 (558)
Q Consensus 302 e~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~--~~i~~~~~~~~ 379 (558)
|+|+++|+++|+++++||++|+++|.|+++++.+..+|++|+||++||++|++||......+.+..+ +.++++ .+++
T Consensus 320 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i-~~~~ 398 (918)
T PLN02305 320 ETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQV-LSVS 398 (918)
T ss_pred CCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHh-hhcc
Confidence 9999999999999999999999999999999888999999999999999999999731112222113 344555 7789
Q ss_pred cccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCCCccCCCCCCCcHHHHHhhcCCcccHHHH
Q 008659 380 DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEA 459 (558)
Q Consensus 380 ~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp~~yG~~~S~IT~e~i~~~L~g~~tleea 459 (558)
+.+||||+|+||++|+++|++|+|||||||||+||++|++|++||++|+|||++||||+|+||+|||+.+|+| +||+||
T Consensus 399 ~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~TleeA 477 (918)
T PLN02305 399 ERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTVEKA 477 (918)
T ss_pred cccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCCceEEeCCCCCCCChHHH
Q 008659 460 IKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK 539 (558)
Q Consensus 460 l~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~VftPsd~~~~~~~W~ 539 (558)
|++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||++++++.|.|+
T Consensus 478 l~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~ 557 (918)
T PLN02305 478 IEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWK 557 (918)
T ss_pred HHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998776667789999988778899999
Q ss_pred HHHHHhhhccccceeeecC
Q 008659 540 LAKAHVLAHDAGYHQLVSH 558 (558)
Q Consensus 540 LAK~~v~~aD~~~HQlisH 558 (558)
||||||++||++|||+|+|
T Consensus 558 LAK~~V~~aD~~~HQlisH 576 (918)
T PLN02305 558 LAKAHVCSNDAGVHQLVNH 576 (918)
T ss_pred HHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=2.1e-153 Score=1280.35 Aligned_cols=486 Identities=47% Similarity=0.865 Sum_probs=450.0
Q ss_pred eEEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc----eeccccccccCCCCCCceEEEE
Q 008659 68 IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK----STIQDYARKIGADGDGNMQYES 143 (558)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~~----~~l~~~~~~~~~~~~~~~~y~~ 143 (558)
++++++++|+++++..++.. .++.+|.++|++|++|+|||||+++||+||+|+ ++|++|+++ ....+++++|+|
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~-~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~~~~~~~y~~ 162 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKET-LVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNIKAERVHYTA 162 (919)
T ss_pred EEEEEEEEEEeccccchhhc-ccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCCCCCceEEEE
Confidence 77888888888776655543 258899999999999999999999999998443 999999987 455677789999
Q ss_pred EEEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeCCccccCCCCCCCeEEeeceecccCCCcHHHHHHHHH
Q 008659 144 EFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAE 223 (558)
Q Consensus 144 ~f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~RifF~nkayLP~~tP~~L~~~Re~ 223 (558)
+|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+.+||||+||+|||++||++|++|||+
T Consensus 163 ~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~Re~ 242 (919)
T PLN02264 163 EFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREK 242 (919)
T ss_pred EEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCccccCCCCCCCCCCCcccccC---CCccCC
Q 008659 224 ELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPR 300 (558)
Q Consensus 224 EL~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~~~~dp~se~r~~---~~yvPr 300 (558)
||++|||||+||||+||||||||||||||+||++++++||||||.+|||||||||||||+++||.+|+|.. .+||||
T Consensus 243 eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iYvPr 322 (919)
T PLN02264 243 ELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPR 322 (919)
T ss_pred HHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCceeCCC
Confidence 99999999999999999999999999999999999999999999779999999999999999999999954 479999
Q ss_pred CCccChhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCcccccchhch-hhHHHHhhhccC
Q 008659 301 DEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTG 379 (558)
Q Consensus 301 De~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~-~~~i~~~~~~~~ 379 (558)
||+|+++|+++|.+++++|++|+++|+|+++++.+ +|+||+||++||++|+++|.....+..+.+ +|.+.+.+.+++
T Consensus 323 DE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~~p~~~~~~~~~~~~ 400 (919)
T PLN02264 323 DEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDDIFKKFPLPKVVTTLQESS 400 (919)
T ss_pred CCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhhHhhcCChHHHHHHhhhcc
Confidence 99999999999999999999999999999988654 999999999999999999873212223334 434444447889
Q ss_pred cccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCCCccCCCCCCCcHHHHHhhcCCcccHHHH
Q 008659 380 DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEA 459 (558)
Q Consensus 380 ~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp~~yG~~~S~IT~e~i~~~L~g~~tleea 459 (558)
+.+||||+|+||++|+++|++|+|||||||||+||++|++|++||++|+|||+.||+++|+||++||+++|+| +||+||
T Consensus 401 ~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~Tl~eA 479 (919)
T PLN02264 401 EGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-LSVQQA 479 (919)
T ss_pred cccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCCceEEeCCCCCCCChHHH
Q 008659 460 IKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK 539 (558)
Q Consensus 460 l~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~VftPsd~~~~~~~W~ 539 (558)
|++|||||+||||++|||++++|.++++++|||+||||++++|+|+||||||+++++.+++++++||||+++++++|.|+
T Consensus 480 l~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~W~ 559 (919)
T PLN02264 480 LEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWMWQ 559 (919)
T ss_pred HHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998766566789999977777899999
Q ss_pred HHHHHhhhccccceeeecC
Q 008659 540 LAKAHVLAHDAGYHQLVSH 558 (558)
Q Consensus 540 LAK~~v~~aD~~~HQlisH 558 (558)
||||||++||++|||+|+|
T Consensus 560 LAK~~V~~aD~~~HQlisH 578 (919)
T PLN02264 560 LAKAHVCSNDAGVHQLVNH 578 (919)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=2e-152 Score=1275.64 Aligned_cols=487 Identities=41% Similarity=0.724 Sum_probs=449.9
Q ss_pred cceeeeEEeeeee-eEEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCC-CCC-Ccc----eecccc
Q 008659 55 NTIKAIATSTEKS-IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDP-KTG-LDK----STIQDY 127 (558)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~-~~g-~~~----~~l~~~ 127 (558)
++++|+|++|+++ ++++++.+ +.+|.++|++||+|+|||||+++++ +|| +|| ++|++|
T Consensus 19 ~~~~~~v~l~~k~~ld~~~~~~---------------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w 83 (866)
T PLN02337 19 EKIKGTVVLMKKNVLDFNDFNA---------------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKW 83 (866)
T ss_pred ceEEEEEEEEEecccchhhccc---------------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhh
Confidence 3677777777766 55555443 7899999999999999999999998 687 443 899999
Q ss_pred ccccCCCCCCceEEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCCeEEeece
Q 008659 128 ARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNK 206 (558)
Q Consensus 128 ~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~RifF~nk 206 (558)
+++.....+++++|+|+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+||||||++++|+.+||||+||
T Consensus 84 ~~~~~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk 163 (866)
T PLN02337 84 ITTITSLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNK 163 (866)
T ss_pred ccCCCCCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCC
Confidence 9876565677789999999999999999999999999999999999999995 999999999999999999999999999
Q ss_pred ecccCCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCC-CCCCCCccccCCCCCCCC
Q 008659 207 LYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDT 285 (558)
Q Consensus 207 ayLP~~tP~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG-~~~PYPRR~RTGR~~~~~ 285 (558)
+|||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++
T Consensus 164 ~ylp~~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~ 243 (866)
T PLN02337 164 TYLPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKT 243 (866)
T ss_pred CcCcccccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 779999999999999999
Q ss_pred CCCcccccC----CCccCCCCccChhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCcccc
Q 008659 286 DQFSEKREG----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQE 361 (558)
Q Consensus 286 dp~se~r~~----~~yvPrDe~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~ 361 (558)
||.+|+|.. .+||||||+|+++|+++|.+++++|++|+++|.|+++++.+..+|++|+||++||++|+++|..+..
T Consensus 244 dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~~ 323 (866)
T PLN02337 244 DPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPLL 323 (866)
T ss_pred CCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchHH
Confidence 999999943 5799999999999999999999999999999999999988899999999999999999999874332
Q ss_pred cchhc-h-hhHHHHhhhccCcccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCCCccCCCCC
Q 008659 362 GFWNT-L-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPES 439 (558)
Q Consensus 362 ~~~~~-~-~~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp~~yG~~~S 439 (558)
+..+. + ++.+++++.++++.++|||+|+||++|+++|++|+|||||||||+||++|+||++||++|+|||++||+|+|
T Consensus 324 ~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s 403 (866)
T PLN02337 324 EELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNS 403 (866)
T ss_pred HHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccC
Confidence 22333 3 467888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhhcCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCC
Q 008659 440 AITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK 519 (558)
Q Consensus 440 ~IT~e~i~~~L~g~~tleeal~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL~~p~~~~~ 519 (558)
+||++||+++|+| +||+|||++|||||+||||++|||+.++|...+ +.||||||||++++|+|+||||||++|+.+++
T Consensus 404 ~iT~e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~-k~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~ 481 (866)
T PLN02337 404 SITEEHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTST-KTYATRTLLFLKDDGTLKPLAIELSLPHPQGD 481 (866)
T ss_pred ccCHHHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCC-ccccceeEEEECCCCCEeEEEEEeccCCCCcc
Confidence 9999999999998 999999999999999999999999999998654 49999999999999999999999998875543
Q ss_pred --CCCceEEeCCCCCCCChHHHHHHHHhhhccccceeeecC
Q 008659 520 --PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH 558 (558)
Q Consensus 520 --~~~~~VftPsd~~~~~~~W~LAK~~v~~aD~~~HQlisH 558 (558)
++.++||||+++++++|.|+||||||++||++|||+|+|
T Consensus 482 ~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisH 522 (866)
T PLN02337 482 KFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISH 522 (866)
T ss_pred cCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHH
Confidence 467999999987778999999999999999999999999
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=7.4e-106 Score=895.67 Aligned_cols=340 Identities=57% Similarity=0.985 Sum_probs=280.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCC-CCCCCCccccCCCCCCCCCCCcccc
Q 008659 214 PDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKR 292 (558)
Q Consensus 214 P~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG-~~~PYPRR~RTGR~~~~~dp~se~r 292 (558)
|++|+++||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cCCCccCCCCccChhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCcccccchhch-hhHH
Q 008659 293 EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRL 371 (558)
Q Consensus 293 ~~~~yvPrDe~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~-~~~i 371 (558)
...+||||||+|+++|+++|.+++++|++|.++|.|++++..+..+|+||+||++||++|+++|. ..+.+.+ ++.+
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~---~~~~~~~~~~~~ 157 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT---DLLKKLIPLELL 157 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H---HHHCCHTTSTTC
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh---hHhhhcCcHHHH
Confidence 88999999999999999999999999999999999999988889999999999999999998883 1111222 4567
Q ss_pred HHhhhccCcccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCCCccCCCCCCCcHHHHHhhcC
Q 008659 372 VKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIG 451 (558)
Q Consensus 372 ~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp~~yG~~~S~IT~e~i~~~L~ 451 (558)
++++..+++.++|||+|+|+++++++|++|+|||||+|||+||++|++|++||++|+|||++||+++|+||++||+..|+
T Consensus 158 ~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~l~ 237 (667)
T PF00305_consen 158 KELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQLE 237 (667)
T ss_dssp CTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHHCH
T ss_pred HHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhccC
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCCceEEeCCCC
Q 008659 452 GMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWH 531 (558)
Q Consensus 452 g~~tleeal~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~VftPsd~ 531 (558)
| +||++||++|||||+||||+++|+++++|. .+++.|||+||||++++|+|+||||||++|+..+.++.++||||+++
T Consensus 238 g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~~d 315 (667)
T PF00305_consen 238 G-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPSDD 315 (667)
T ss_dssp C-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TTSS
T ss_pred C-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecCCC
Confidence 9 999999999999999999999999999998 77889999999999999999999999998876554567899999966
Q ss_pred CCCChHHHHHHHHhhhccccceeeecC
Q 008659 532 STECWLWKLAKAHVLAHDAGYHQLVSH 558 (558)
Q Consensus 532 ~~~~~~W~LAK~~v~~aD~~~HQlisH 558 (558)
++.+|.|+||||||++||++|||+|+|
T Consensus 316 ~~~~~~W~lAK~~v~~aD~~~HqlisH 342 (667)
T PF00305_consen 316 GTEDWLWLLAKAHVQVADANYHQLISH 342 (667)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CccchHHHHHHHHHHhhhHHHHHHHhh
Confidence 656799999999999999999999999
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=3.4e-39 Score=297.54 Aligned_cols=131 Identities=52% Similarity=0.867 Sum_probs=114.4
Q ss_pred EEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc----eeccccccccCCCCCCceEEEEE
Q 008659 69 KVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESE 144 (558)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~~----~~l~~~~~~~~~~~~~~~~y~~~ 144 (558)
.++|+++++++++..++... +.+|.+.|++|++|+||||||++||+||+|| ++|++|.++. +++++|+++
T Consensus 2 ~vka~V~v~~k~~~~~~~~~--~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~----~~e~~y~~~ 75 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG--SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL----AGESAYEAE 75 (137)
T ss_pred EEEEEEEEEEeecccccccc--chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC----CcceEEEEE
Confidence 35555666555554444433 6789999999999999999999999999665 8999998653 556899999
Q ss_pred EEecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCCeEEeec
Q 008659 145 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTN 205 (558)
Q Consensus 145 f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~RifF~n 205 (558)
|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++|+++||||+|
T Consensus 76 F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 76 FEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 99999999999999999999999999999999995 99999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.29 E-value=1.6e-11 Score=107.26 Aligned_cols=82 Identities=39% Similarity=0.631 Sum_probs=64.3
Q ss_pred cEEEEEEeeecCCCCCCc-ceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC-CCceeeeeEEEeecC-C
Q 008659 103 SLLLELVSAELDPKTGLD-KSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH-HKEMYLKDIVLDGLP-N 179 (558)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h-~~e~fl~~i~l~~~p-~ 179 (558)
+|.|+|++++.+ +|.. ...++.|. ...+ ..|+..|+++.++|++++|.|.|++ +.+|||++|+|++.+ +
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f~~g-~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~ 91 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----FARG-STYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTG 91 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----ccCC-ceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCC
Confidence 599999988765 3321 13344432 2333 5788899999999999999999999 899999999998766 4
Q ss_pred CcEEEeeCCcccc
Q 008659 180 GPVNVTCNSWLHS 192 (558)
Q Consensus 180 ~~i~FpCnsWV~~ 192 (558)
..++|+||+||++
T Consensus 92 ~~~~F~c~~Wl~~ 104 (105)
T smart00308 92 GKYHFPCNSWVYP 104 (105)
T ss_pred CEEEEEcCceeCC
Confidence 6799999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.87 E-value=5.6e-09 Score=91.43 Aligned_cols=65 Identities=29% Similarity=0.525 Sum_probs=57.9
Q ss_pred eEEEEEEEecCCCCceeEEEEEec---CCCceeeeeEEEeecC-CCcEEEeeCCccccCCCCCCCeEEe
Q 008659 139 MQYESEFEVPSGFGEIGAILVENE---HHKEMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQKRVFF 203 (558)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~---h~~e~fl~~i~l~~~p-~~~i~FpCnsWV~~~~~~~~~RifF 203 (558)
...+..|.++.++|++.+|.|.+. +...|||++|+|...+ +..+.|+||+||....+++..||||
T Consensus 45 ~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 45 STDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred ceEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 567777778889999999999998 7889999999998755 4579999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.71 E-value=1.4e-07 Score=83.78 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=55.1
Q ss_pred eEEEEEEEecCCCCceeEEEEEecCCC---ceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCCeEE
Q 008659 139 MQYESEFEVPSGFGEIGAILVENEHHK---EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVF 202 (558)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~h~~---e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~Rif 202 (558)
..++..|.++.++|++.+|.|.+.+.. +|||++|+|.+... ..++|+||+||.....++..|+|
T Consensus 48 ~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 48 STDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred CceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeec
Confidence 456677788889999999999998855 99999999987664 57999999999998888888876
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.30 E-value=2.4e-06 Score=76.86 Aligned_cols=76 Identities=14% Similarity=0.309 Sum_probs=53.5
Q ss_pred cEEEEEEeeecCCCCCCcceeccccccccCCCCCC-ceEEEEEEEecCCCCceeEEEEEecC-CCceeeeeEEEeecCC-
Q 008659 103 SLLLELVSAELDPKTGLDKSTIQDYARKIGADGDG-NMQYESEFEVPSGFGEIGAILVENEH-HKEMYLKDIVLDGLPN- 179 (558)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~~~~l~~~~~~~~~~~~~-~~~y~~~f~~~~dfG~pgav~v~n~h-~~e~fl~~i~l~~~p~- 179 (558)
+|.|+||-++- .++. ..|.+ ....| ...|. |. ++++|++-.|.|.|.. .+.|||+.|+|.+ |.
T Consensus 20 ~V~i~L~G~~g--~S~~--~~L~~------~F~~G~~d~F~--v~-~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g 85 (109)
T cd02899 20 TIEITLLGSSG--RSNP--KTLSQ------GFYPGSLKRIR--FR-AADVGDINAIILSNTALNDPWYCDYVRIKS-EDG 85 (109)
T ss_pred eEEEEEEECCC--CcCC--EEccC------ccCCCceEEEE--EC-ccccCceEEEEEECCCCCCCceeeEEEEEC-CCC
Confidence 48899996542 2222 22332 12222 23564 45 8999999999998887 6789999999986 74
Q ss_pred CcEEEeeCCcccc
Q 008659 180 GPVNVTCNSWLHS 192 (558)
Q Consensus 180 ~~i~FpCnsWV~~ 192 (558)
..++||||+|+..
T Consensus 86 ~~~~Fpc~rWla~ 98 (109)
T cd02899 86 KVFAFNVKRWIGY 98 (109)
T ss_pred CEEEEEcceeeCC
Confidence 5688999999965
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.94 E-value=6.8e-05 Score=67.56 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=56.0
Q ss_pred cEEEEEEeeecCCCCCCcceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC
Q 008659 103 SLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN 179 (558)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p~ 179 (558)
+|.|+|+-+.-+ ++ ...|..... ....+ ...+..+.++.++|++-.|.|.... ...|||+.|+|++.-+
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~---~FerG-~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~~ 91 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGY---DFERG-AVDEYKVKVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPGG 91 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCC---ccCCC-CeeEEEEecccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCCC
Confidence 488888854432 22 223332211 12333 3444566678899999999998875 6799999999986334
Q ss_pred CcEEEeeCCccccC
Q 008659 180 GPVNVTCNSWLHSK 193 (558)
Q Consensus 180 ~~i~FpCnsWV~~~ 193 (558)
..++||||+|+...
T Consensus 92 ~~~~F~c~rWl~~~ 105 (113)
T cd01753 92 DEYHFPCYRWIEGY 105 (113)
T ss_pred CEEEEEhHHeECCC
Confidence 56899999999774
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.88 E-value=0.00018 Score=65.11 Aligned_cols=87 Identities=14% Similarity=0.284 Sum_probs=56.1
Q ss_pred CcEEEEEEeeecCCCCCCcceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecC
Q 008659 102 KSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLP 178 (558)
Q Consensus 102 ~~v~lqLvS~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p 178 (558)
-+|.|+|+-+.- . .+...|..+. .......+ ...+..+.. .++|++-.|.|.... ...|||+.|+|.+..
T Consensus 19 a~V~i~L~G~~g--~--s~~~~L~~~~-~~~~FerG-s~d~F~i~~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~ 91 (120)
T cd01756 19 ANVFITLYGENG--D--TGKRKLKKSN-NKNKFERG-QTDKFTVEA-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPG 91 (120)
T ss_pred cEEEEEEEeCCC--c--cccEEccCCC-cCCcccCC-CeEEEEEEe-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECC
Confidence 348888874221 1 2234455540 11123333 233334445 799999999998876 468999999997644
Q ss_pred -CCcEEEeeCCccccCCC
Q 008659 179 -NGPVNVTCNSWLHSKHD 195 (558)
Q Consensus 179 -~~~i~FpCnsWV~~~~~ 195 (558)
+...+||||+|+...+.
T Consensus 92 ~~~~~~F~~~~Wl~~~~~ 109 (120)
T cd01756 92 TGDEYTFPCNRWLDKDED 109 (120)
T ss_pred CceEEEEEeCCccCCCCC
Confidence 35689999999987654
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.70 E-value=9.1e-05 Score=67.26 Aligned_cols=54 Identities=13% Similarity=0.385 Sum_probs=43.1
Q ss_pred EEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC-CcEEEeeCCccccCCC
Q 008659 141 YESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHD 195 (558)
Q Consensus 141 y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~ 195 (558)
|++.+.. .++|++-.|.|.... ...|||+.|+|++.+. ..++||||+|+.-.+.
T Consensus 43 f~~~v~~-~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 43 LEMTFDC-QNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eEEEEec-CCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 4444433 999999999998765 6799999999988674 5699999999976553
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.61 E-value=0.00053 Score=62.08 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=57.5
Q ss_pred cEEEEEEeeecCCCCCCcceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecC-
Q 008659 103 SLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLP- 178 (558)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p- 178 (558)
+|.|+|+.+.-+ + ++..|..... .....+ ..++..+..+.++|++-.|.|.... ...|||++|+|.+.-
T Consensus 20 ~V~i~L~G~~g~--s--~~~~L~~~~~--~~F~rG-~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t 92 (120)
T cd01752 20 KVTITLYGAEGE--S--EPHHLRDPEK--PIFERG-SVDSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQT 92 (120)
T ss_pred EEEEEEEeCCCC--c--ccEEcCCCCc--cceeCC-CeeEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCC
Confidence 488888854432 1 1233433211 123333 4566666777899999999997554 569999999997643
Q ss_pred CCcEEEeeCCccccCCC
Q 008659 179 NGPVNVTCNSWLHSKHD 195 (558)
Q Consensus 179 ~~~i~FpCnsWV~~~~~ 195 (558)
+...+||||+|+...+.
T Consensus 93 ~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 93 GKKWFFLCNDWLSVEEG 109 (120)
T ss_pred CcEEEEEeCcEECCcCC
Confidence 35689999999987654
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.23 E-value=0.00077 Score=62.47 Aligned_cols=54 Identities=9% Similarity=0.112 Sum_probs=42.3
Q ss_pred EEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC----CcEEEeeCCccccCCC
Q 008659 140 QYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN----GPVNVTCNSWLHSKHD 195 (558)
Q Consensus 140 ~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p~----~~i~FpCnsWV~~~~~ 195 (558)
.|. +..+.++|++-.|.|.... ...|||..|+|.+... ..++||||+|+...+.
T Consensus 59 ~F~--v~~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 59 RFS--GRGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred EEE--EEeccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 554 4457889999999998664 6799999999986542 2689999999976554
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=54.21 E-value=68 Score=29.18 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=40.6
Q ss_pred eEEEEEEEecCCCCceeEEEEEecC----------CCceeeeeEEEeecCCCcEEEeeCC
Q 008659 139 MQYESEFEVPSGFGEIGAILVENEH----------HKEMYLKDIVLDGLPNGPVNVTCNS 188 (558)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~h----------~~e~fl~~i~l~~~p~~~i~FpCns 188 (558)
..|+.-+..+.++|.+-.|.+.=+. ...||++.|+|++...+.-..-|.+
T Consensus 46 ~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 46 KTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 6788889899999999999886322 3589999999987776666677877
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=53.17 E-value=12 Score=44.66 Aligned_cols=53 Identities=9% Similarity=0.370 Sum_probs=38.5
Q ss_pred EEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEee-cCCCcEEEeeCCccccCC
Q 008659 141 YESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDG-LPNGPVNVTCNSWLHSKH 194 (558)
Q Consensus 141 y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~-~p~~~i~FpCnsWV~~~~ 194 (558)
-+.+|+. +++|..--+.|--.. ...||++.|.|.. +-+.++-|||++|.-+..
T Consensus 1013 ~~f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1013 PLFKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred ceeEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCcc
Confidence 4556654 899999888884332 5689999987732 335689999999986644
No 17
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=25.22 E-value=70 Score=31.14 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=34.6
Q ss_pred ecccCCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCcccc
Q 008659 207 LYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCR 277 (558)
Q Consensus 207 ayLP~~tP~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~R 277 (558)
+|+--+.|+.-.|..--+|++-.-=| |++|.|||+.-|. .+.|--|| +| ||||=
T Consensus 81 ~~~~v~~~a~~vK~~~i~iEe~hplG--------RL~DlDV~~~~g~-----~iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 81 AFLVVDAPALELKRLMIKLEESHPLG--------RLWDIDVLDADGK-----SLSRTDLG---LP-PRKCL 134 (165)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCchh--------hheeheeecCCCC-----CcCHHHcC---CC-CCeee
Confidence 44445556555666666666655222 8999999974332 35677777 55 88885
No 18
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.76 E-value=28 Score=28.90 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.2
Q ss_pred CCcHHHHHhhcCCcccHHHHHhcC
Q 008659 440 AITTELIEKEIGGMISVEEAIKQK 463 (558)
Q Consensus 440 ~IT~e~i~~~L~g~~tleeal~~g 463 (558)
.|-.+|+-..|+| .|.+|||++|
T Consensus 21 ~la~dhvL~~LGg-rT~~eAL~~G 43 (63)
T PF11248_consen 21 SLARDHVLSELGG-RTAAEALEAG 43 (63)
T ss_pred HHHHhcchhhcCC-cCHHHHHHcC
Confidence 5777888889988 9999999987
No 19
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=43 Score=32.40 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=36.1
Q ss_pred eecccCCCCCCCCCCccCCCCCCCcHHHHHhhcCCcccHHHHHhcCC
Q 008659 418 RLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKK 464 (558)
Q Consensus 418 ~r~te~P~~s~ldp~~yG~~~S~IT~e~i~~~L~g~~tleeal~~gr 464 (558)
+..+.+|++||+| +|=.+-+-.|++.|.++|++.--|..|+++..
T Consensus 104 kl~RsLp~rfkvd--V~I~~GtH~tE~~vNKQLnDKERVaAA~EN~~ 148 (161)
T KOG3381|consen 104 KLLRSLPPRFKVD--VYIKPGTHATEEAVNKQLNDKERVAAALENPN 148 (161)
T ss_pred eeeecCCCceeEE--EEEcCCCcCCHHHHHhhhccHHHHHHHhcChH
Confidence 4456899999988 56566677899999999998678888888765
Done!