Query 008660
Match_columns 558
No_of_seqs 315 out of 2551
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.7E-90 3.7E-95 745.4 46.9 481 13-553 67-566 (727)
2 PLN03192 Voltage-dependent pot 100.0 3.1E-69 6.8E-74 615.5 45.0 431 13-530 51-491 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 5.6E-67 1.2E-71 523.7 36.0 389 65-529 29-427 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.7E-64 3.8E-69 509.9 24.6 445 15-530 209-663 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 9.2E-58 2E-62 462.8 26.7 413 15-528 219-644 (815)
6 KOG3713 Voltage-gated K+ chann 99.4 6.4E-13 1.4E-17 136.3 12.8 182 65-334 240-427 (477)
7 PF00520 Ion_trans: Ion transp 99.4 7.3E-13 1.6E-17 125.4 11.7 194 69-333 1-200 (200)
8 PRK09392 ftrB transcriptional 99.4 6.6E-12 1.4E-16 123.1 17.5 117 405-531 7-125 (236)
9 cd00038 CAP_ED effector domain 99.4 1.2E-11 2.7E-16 105.5 13.7 109 412-530 1-112 (115)
10 PF00027 cNMP_binding: Cyclic 99.3 1.7E-11 3.6E-16 100.7 12.2 88 430-527 1-91 (91)
11 PRK11753 DNA-binding transcrip 99.3 4.6E-11 9.9E-16 114.9 16.9 108 414-530 6-116 (211)
12 smart00100 cNMP Cyclic nucleot 99.3 1.3E-10 2.9E-15 99.6 14.9 110 412-529 1-113 (120)
13 KOG0614 cGMP-dependent protein 99.3 5E-12 1.1E-16 129.4 6.4 120 401-530 268-392 (732)
14 KOG1113 cAMP-dependent protein 99.2 3.9E-11 8.5E-16 117.9 9.0 108 404-523 121-228 (368)
15 KOG1545 Voltage-gated shaker-l 99.2 5.6E-12 1.2E-16 123.2 2.6 43 288-330 397-439 (507)
16 PRK11161 fumarate/nitrate redu 99.2 5.4E-10 1.2E-14 109.4 16.5 113 407-530 15-131 (235)
17 KOG0614 cGMP-dependent protein 99.2 2E-11 4.4E-16 124.9 5.7 118 397-526 146-263 (732)
18 COG0664 Crp cAMP-binding prote 99.2 7.5E-10 1.6E-14 106.0 16.3 113 408-530 3-118 (214)
19 PLN02868 acyl-CoA thioesterase 99.2 2.8E-10 6E-15 120.8 13.3 113 404-528 7-121 (413)
20 COG2905 Predicted signal-trans 99.2 4.5E-10 9.7E-15 116.9 14.3 115 404-529 6-120 (610)
21 PRK10402 DNA-binding transcrip 99.1 5E-10 1.1E-14 109.1 13.3 99 422-530 25-126 (226)
22 PF07885 Ion_trans_2: Ion chan 99.1 5.5E-10 1.2E-14 89.7 10.2 55 284-338 24-78 (79)
23 KOG1420 Ca2+-activated K+ chan 99.0 5.4E-10 1.2E-14 115.1 6.7 127 283-415 287-418 (1103)
24 KOG1419 Voltage-gated K+ chann 99.0 1.1E-08 2.4E-13 105.8 16.1 88 281-372 266-354 (654)
25 TIGR03697 NtcA_cyano global ni 98.9 1.6E-08 3.6E-13 95.6 13.3 87 436-530 1-90 (193)
26 KOG1113 cAMP-dependent protein 98.9 3.2E-09 6.9E-14 104.7 8.3 117 400-528 235-352 (368)
27 PRK09391 fixK transcriptional 98.9 3.6E-08 7.9E-13 96.2 14.6 96 422-530 32-130 (230)
28 PRK13918 CRP/FNR family transc 98.8 1E-07 2.2E-12 90.9 14.3 81 427-518 5-90 (202)
29 PRK10537 voltage-gated potassi 98.4 4.2E-06 9.2E-11 87.5 14.1 52 284-335 168-219 (393)
30 KOG4390 Voltage-gated A-type K 98.3 1E-07 2.2E-12 94.4 -1.6 45 286-330 358-402 (632)
31 KOG2968 Predicted esterase of 98.0 1E-05 2.2E-10 88.4 6.4 102 419-530 499-603 (1158)
32 KOG3684 Ca2+-activated K+ chan 97.8 0.002 4.2E-08 66.5 18.4 54 281-334 284-337 (489)
33 PF01007 IRK: Inward rectifier 97.6 0.00033 7.1E-09 71.6 10.3 55 283-337 83-139 (336)
34 PF08412 Ion_trans_N: Ion tran 97.4 0.00012 2.5E-09 57.6 2.7 32 13-44 36-67 (77)
35 KOG1418 Tandem pore domain K+ 97.3 0.00025 5.4E-09 75.5 5.6 54 285-338 116-169 (433)
36 KOG2968 Predicted esterase of 97.3 0.0017 3.7E-08 71.7 10.8 129 389-529 84-216 (1158)
37 PRK11832 putative DNA-binding 97.0 0.02 4.3E-07 54.1 14.2 101 419-530 13-114 (207)
38 PF04831 Popeye: Popeye protei 97.0 0.043 9.4E-07 48.7 14.8 128 416-552 15-144 (153)
39 KOG4404 Tandem pore domain K+ 96.0 0.0082 1.8E-07 59.3 4.6 50 285-334 187-244 (350)
40 KOG4404 Tandem pore domain K+ 95.7 0.0028 6E-08 62.6 -0.0 50 285-334 81-130 (350)
41 KOG3827 Inward rectifier K+ ch 95.1 0.14 3E-06 52.1 9.6 55 284-338 112-168 (400)
42 KOG1418 Tandem pore domain K+ 93.5 0.016 3.5E-07 61.5 -1.0 47 284-330 242-296 (433)
43 KOG2302 T-type voltage-gated C 93.4 2.6 5.7E-05 47.9 15.6 133 10-181 1101-1245(1956)
44 KOG3542 cAMP-regulated guanine 93.3 0.18 4E-06 54.4 6.6 112 404-526 280-392 (1283)
45 KOG3542 cAMP-regulated guanine 90.9 0.29 6.3E-06 52.9 4.6 104 391-514 23-126 (1283)
46 KOG3193 K+ channel subunit [In 90.4 0.59 1.3E-05 49.4 6.2 49 286-334 219-267 (1087)
47 COG4709 Predicted membrane pro 89.4 1.8 3.8E-05 39.9 7.7 76 346-423 6-85 (195)
48 PF08006 DUF1700: Protein of u 86.5 3.6 7.8E-05 38.3 8.3 56 345-402 5-64 (181)
49 PLN03223 Polycystin cation cha 82.6 34 0.00074 41.1 15.1 23 65-87 1213-1235(1634)
50 PF07883 Cupin_2: Cupin domain 77.9 4.9 0.00011 30.4 4.9 44 431-477 3-47 (71)
51 KOG0500 Cyclic nucleotide-gate 76.3 1.2E+02 0.0025 32.7 17.2 41 389-429 260-305 (536)
52 PLN03192 Voltage-dependent pot 74.7 1.6E+02 0.0035 34.4 18.3 41 388-428 327-371 (823)
53 PF05899 Cupin_3: Protein of u 72.7 9.3 0.0002 29.8 5.2 29 447-477 26-54 (74)
54 TIGR03037 anthran_nbaC 3-hydro 69.3 18 0.00038 32.9 6.7 48 429-477 30-80 (159)
55 PF00520 Ion_trans: Ion transp 68.0 59 0.0013 29.6 10.6 56 157-213 67-122 (200)
56 PF14377 DUF4414: Domain of un 67.7 11 0.00024 31.8 5.0 44 358-401 52-105 (108)
57 PRK13290 ectC L-ectoine syntha 67.0 38 0.00083 29.4 8.3 69 428-513 37-106 (125)
58 PF02037 SAP: SAP domain; Int 53.2 30 0.00064 22.6 4.0 26 346-371 5-35 (35)
59 COG0662 {ManC} Mannose-6-phosp 50.9 48 0.001 28.8 6.2 49 426-477 36-85 (127)
60 PF00060 Lig_chan: Ligand-gate 50.2 27 0.00058 30.7 4.6 75 281-357 41-115 (148)
61 KOG2301 Voltage-gated Ca2+ cha 49.5 1.2E+02 0.0026 37.9 11.0 237 27-326 843-1092(1592)
62 PRK13264 3-hydroxyanthranilate 47.6 41 0.0009 31.0 5.3 46 431-477 38-86 (177)
63 KOG0498 K+-channel ERG and rel 45.8 1.1E+02 0.0023 35.0 9.2 43 388-430 371-418 (727)
64 PF13314 DUF4083: Domain of un 44.5 76 0.0017 23.4 5.1 39 317-355 14-56 (58)
65 KOG0501 K+-channel KCNQ [Inorg 43.7 3.8E+02 0.0082 29.6 12.3 50 387-436 499-553 (971)
66 PF14377 DUF4414: Domain of un 42.9 61 0.0013 27.3 5.4 49 358-406 8-69 (108)
67 KOG3300 NADH:ubiquinone oxidor 39.6 79 0.0017 27.4 5.4 46 346-392 61-106 (146)
68 COG1917 Uncharacterized conser 36.1 80 0.0017 27.3 5.3 49 428-479 45-94 (131)
69 KOG3676 Ca2+-permeable cation 36.0 7.3E+02 0.016 28.6 16.9 72 297-369 601-683 (782)
70 COG3450 Predicted enzyme of th 31.2 1.4E+02 0.0031 25.6 5.7 41 433-477 52-92 (116)
71 PF13623 SurA_N_2: SurA N-term 31.2 1.2E+02 0.0026 27.1 5.6 41 315-355 9-66 (145)
72 smart00835 Cupin_1 Cupin. This 31.0 1.4E+02 0.0031 26.3 6.2 52 427-478 31-86 (146)
73 COG5559 Uncharacterized conser 30.7 65 0.0014 23.8 3.0 22 356-377 8-29 (65)
74 smart00513 SAP Putative DNA-bi 29.5 81 0.0018 20.4 3.2 25 347-371 6-35 (35)
75 COG3837 Uncharacterized conser 28.0 94 0.002 28.1 4.2 47 429-478 45-93 (161)
76 PRK11171 hypothetical protein; 27.4 1.7E+02 0.0037 29.0 6.6 48 427-477 185-233 (266)
77 PF12973 Cupin_7: ChrR Cupin-l 27.1 2.3E+02 0.005 22.7 6.2 64 427-512 25-88 (91)
78 COG3257 GlxB Uncharacterized p 26.4 2.2E+02 0.0048 27.2 6.5 57 441-515 78-136 (264)
79 PF07697 7TMR-HDED: 7TM-HD ext 26.2 4.4E+02 0.0095 24.7 9.1 59 388-447 146-207 (222)
80 cd07313 terB_like_2 tellurium 25.8 3.2E+02 0.007 22.2 7.1 59 346-404 20-81 (104)
81 PF11699 CENP-C_C: Mif2/CENP-C 25.7 1.3E+02 0.0028 24.2 4.3 27 448-477 35-61 (85)
82 PF10281 Ish1: Putative stress 25.6 92 0.002 20.7 2.9 15 348-362 7-21 (38)
83 PHA01757 hypothetical protein 25.6 3.3E+02 0.0071 21.5 6.2 29 308-336 4-32 (98)
84 PF08285 DPM3: Dolichol-phosph 24.7 3.9E+02 0.0084 21.8 8.6 34 327-360 50-90 (91)
85 KOG1054 Glutamate-gated AMPA-t 24.3 1.9E+02 0.0041 31.9 6.3 47 287-334 598-644 (897)
86 PF08566 Pam17: Mitochondrial 24.0 5.4E+02 0.012 23.7 8.4 58 305-362 69-133 (173)
87 PF06971 Put_DNA-bind_N: Putat 22.9 2.2E+02 0.0047 20.4 4.5 42 357-398 1-49 (50)
88 PRK04190 glucose-6-phosphate i 22.8 3.4E+02 0.0075 25.4 7.3 50 428-477 70-130 (191)
89 PF08016 PKD_channel: Polycyst 22.5 7.8E+02 0.017 26.0 11.0 23 311-333 391-413 (425)
90 PF14841 FliG_M: FliG middle d 22.1 1.2E+02 0.0026 23.9 3.5 40 383-430 29-68 (79)
91 PF13867 SAP30_Sin3_bdg: Sin3 21.8 1.9E+02 0.0041 20.9 4.1 37 347-388 3-46 (53)
92 PF03579 SHP: Small hydrophobi 21.1 3.5E+02 0.0076 20.0 5.6 32 313-344 17-48 (64)
93 PF10047 DUF2281: Protein of u 20.6 87 0.0019 23.8 2.3 23 356-378 9-31 (66)
94 PRK11171 hypothetical protein; 20.6 2.3E+02 0.005 28.1 6.0 47 428-477 63-111 (266)
95 cd07178 terB_like_YebE telluri 20.3 4.8E+02 0.01 21.3 7.2 74 346-429 20-94 (95)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-90 Score=745.43 Aligned_cols=481 Identities=29% Similarity=0.529 Sum_probs=423.6
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhhceec
Q 008660 13 IIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKK 92 (558)
Q Consensus 13 ~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~ 92 (558)
.+|++|.|++++.||.+++++|+|+++++|++||++.......| .|......++++|.++|++|++||++||||||.+
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 46999999999999999999999999999999999999877777 7777888999999999999999999999999999
Q ss_pred cchhhhhhhhhhhccccccCCceecChhHHh----hhhhhhhhhhhccccceeeeeeccCCC----CcchhhHHHHHHHH
Q 008660 93 ENQRKKFKHLWQQLKNFKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTG----FSTAMTFFVLQYLL 164 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~iDlls~lP~~~i~~~~~~~~~~----~~~~~~~~~l~rl~ 164 (558)
+++ -++|.||++|| |+||++|++|++|+|++..|..+.... ......++.++||+
T Consensus 145 ~~s-----------------~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~ 207 (727)
T KOG0498|consen 145 PSS-----------------YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLP 207 (727)
T ss_pred CCC-----------------ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHH
Confidence 843 37999999999 999999999999999999887651111 11125688899999
Q ss_pred hHHHhhhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCCccc
Q 008660 165 RVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGD 244 (558)
Q Consensus 165 Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (558)
||.|+.++++++.+..++..+++|+.++++++++++++||.||+||++|.++.++||+++
T Consensus 208 Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-------------------- 267 (727)
T KOG0498|consen 208 RLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-------------------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--------------------
Confidence 999999999999999999999999998899999999999999999999998888887643
Q ss_pred cccccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHH
Q 008660 245 YKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVV 324 (558)
Q Consensus 245 ~sW~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~ 324 (558)
+|+...+....+.+..+.||+| +++.+|++|+||+++||||+|||+++|+|..|++|+|++|++|.+
T Consensus 268 -tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~Gll 334 (727)
T KOG0498|consen 268 -TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLL 334 (727)
T ss_pred -ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHH
Confidence 4554421100122333567744 566799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHH
Q 008660 325 LFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKL 400 (558)
Q Consensus 325 ~fa~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~ 400 (558)
+||++||||+ +++++.++|+.|+.++++||++|++|++||+||++|++|+|+.++|+||++++++||+.||.||+.
T Consensus 335 L~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~ 414 (727)
T KOG0498|consen 335 LFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKR 414 (727)
T ss_pred HHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHH
Confidence 9999999999 667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeee
Q 008660 401 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 401 ~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~fG 478 (558)
|+|.++++++|+|+++|++++.+|+.+++++.|+|||+|++|||+.++||||.+|.+++.+ .+|..+...+++|++||
T Consensus 415 hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 415 HLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred HHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999765 33555788999999999
Q ss_pred hhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhhh-----HHHHHhHHHHHHHHHHHHHhh
Q 008660 479 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSV-----SFLQLFWRFKTFKQMQMKRRQ 553 (558)
Q Consensus 479 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~~-----~~~~~~~r~~~~~~~~~~~~~ 553 (558)
|+.++||+..+ +++||+|+|.|+++.|+++||..++++||++++++ ++.+..||--+...+|..-+|
T Consensus 495 eEl~~~~~~~p--------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~ 566 (727)
T KOG0498|consen 495 EELLTWCLDLP--------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR 566 (727)
T ss_pred hHHHHHHhcCC--------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence 88777777544 58899999999999999999999999999998753 333456777666666654443
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3.1e-69 Score=615.47 Aligned_cols=431 Identities=16% Similarity=0.174 Sum_probs=353.2
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhhceec
Q 008660 13 IIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKK 92 (558)
Q Consensus 13 ~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~ 92 (558)
-|||+|.+++++.||.++++++++++++.|+.+. |. +......+.++|.++|++|++||+++|+|||+|
T Consensus 51 ~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~----------F~-~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d 119 (823)
T PLN03192 51 GWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVA----------FL-NASPKRGLEIADNVVDLFFAVDIVLTFFVAYID 119 (823)
T ss_pred CeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----------ee-CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEe
Confidence 4799999999999999999999999999997532 21 111223578899999999999999999999998
Q ss_pred cchhhhhhhhhhhccccccCCceecChhHHh----hhhhhhhhhhhccccceeeeeeccCCCCcchhhHHHHHHHHhHHH
Q 008660 93 ENQRKKFKHLWQQLKNFKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIR 168 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~r 168 (558)
+ ++|.+|.||++|+ |+||++|++|++|++++.... ...........+++++|++|+.|
T Consensus 120 ~-----------------~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~~~~~~~~~~l~llrl~Rl~r 181 (823)
T PLN03192 120 P-----------------RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGTVKLNLSYSLLGLLRFWRLRR 181 (823)
T ss_pred C-----------------CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCCccchHHHHHHHHHHHHHHHH
Confidence 6 5678999999999 899999999999998764321 11111111123445555555555
Q ss_pred hhhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCCccccccc
Q 008660 169 TYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLL 248 (558)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sW~ 248 (558)
+.++++++++... ....+.+++++++..++++||+||+||+++.. .+..+.+|+
T Consensus 182 i~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~------------------------~~~~~~~Wi 235 (823)
T PLN03192 182 VKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADR------------------------YPHQGKTWI 235 (823)
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------cCCCCCchH
Confidence 5555655554322 12234455666666677899999999999831 012346898
Q ss_pred cccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 008660 249 NDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVF 328 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~ 328 (558)
..... . ..+.+++.+|++|+|||++|||||||||++|.|..|++|++++|++|+++|||
T Consensus 236 ~~~~~----------------~-----~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~ 294 (823)
T PLN03192 236 GAVIP----------------N-----FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAY 294 (823)
T ss_pred HHhhh----------------c-----cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHH
Confidence 64210 0 13678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHH
Q 008660 329 LIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGR 404 (558)
Q Consensus 329 iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~ 404 (558)
++|+++++ .++..+++++++.+++||+++++|++||+||++|+++.|+.+ +.+++++++.||++||.++..+++.
T Consensus 295 ~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~l~~ 373 (823)
T PLN03192 295 LIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAE-SLNQQQLIDQLPKSICKSICQHLFL 373 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999954 345567899999999999999999999999999999999853 5788999999999999999999999
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-c-CceEEEEEecCCCeeehhhh
Q 008660 405 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-K-SKLIGLKRQEDGNYCGEEII 482 (558)
Q Consensus 405 ~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~-~~~~~~~~l~~G~~fGe~~l 482 (558)
+.++++++|++++++++.+|+..++++.|.|||.|+.+||.++++|||.+|+|++.. . +++..+..+++|++|||..+
T Consensus 374 ~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~ 453 (823)
T PLN03192 374 PVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGA 453 (823)
T ss_pred HHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHH
Confidence 999999999999999999999999999999999999999999999999999999754 2 23345679999999999976
Q ss_pred hhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 483 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 483 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
. .+.+ +..+++|.+.|+++.|++++|.++++++|+...
T Consensus 454 l--~~~p--------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~ 491 (823)
T PLN03192 454 L--CCRP--------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNV 491 (823)
T ss_pred h--cCCC--------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHH
Confidence 3 2322 789999999999999999999999999999854
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-67 Score=523.68 Aligned_cols=389 Identities=19% Similarity=0.226 Sum_probs=324.0
Q ss_pred eeehhhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhhhccccccCCceecChhHHh-----hhhhhhhhhhhccccc
Q 008660 65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRM-----WMLFFIDGLAILPIPQ 139 (558)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~-----~~~F~iDlls~lP~~~ 139 (558)
..|..+|++.|++|++||+++.||||+ ++|.+|.|-++.+ +..|.+|++|.+|+|+
T Consensus 29 ~~wl~ld~~~D~vyllDi~v~~R~gyl-------------------eqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~ 89 (536)
T KOG0500|consen 29 ENWLPLDYLFDFVYLLDIIVRSRTGYL-------------------EQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDL 89 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH-------------------hcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhH
Confidence 468999999999999999999999999 7999999998888 8899999999999999
Q ss_pred eeeeeeccCCCCcchhhHHHHHHHHhHHHhhhhhHhhHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008660 140 VLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVI-ADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKAT 218 (558)
Q Consensus 140 i~~~~~~~~~~~~~~~~~~~l~rl~Rl~r~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~ 218 (558)
+.++. ++. . +.|++|++|+.|+.+.+.+.+... .++.+ ++..++...+++.||.||+||+++..
T Consensus 90 l~~~~------~~~--~---~~r~nRllk~yRl~~F~~rTetrT~~Pn~f-ri~~lv~~~~ilfHWNaClYf~iS~~--- 154 (536)
T KOG0500|consen 90 LLFKD------GSA--S---LERLNRLLKIYRLFEFFDRTETRTTYPNAF-RISKLVHYCLILFHWNACLYFLISKA--- 154 (536)
T ss_pred HhhcC------Ccc--h---HHHHHHHHHHHHHHHHHHHhccccCCchHH-HHHHHHHHHHHHHHHhhHHHHhhhHh---
Confidence 87652 111 2 234555556666555544443211 23332 33344444556799999999999852
Q ss_pred hhHHHhhcccCCCCCcceecCCCccccccccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcc
Q 008660 219 DCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSA 298 (558)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~tt 298 (558)
.+...++|....-. ...++ . ....++.++|+.|+||+..||||
T Consensus 155 ---------------------~g~~~d~wvY~~i~-------d~~~~---~------c~~~n~~ReY~~S~YWStLTlTT 197 (536)
T KOG0500|consen 155 ---------------------IGFTTDDWVYPKIN-------DPEFA---T------CDAGNLTREYLYSLYWSTLTLTT 197 (536)
T ss_pred ---------------------cCccccccccCCcc-------Ccccc---c------cchhHHHHHHHHHHHHHhhhhhh
Confidence 23455779864210 11111 0 11345889999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008660 299 FGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSET----TRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKREN 374 (558)
Q Consensus 299 vGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~----~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~ 374 (558)
+|. -.+|.|+.|.+|.|+-.++|+.+||.|+|+++|+. ++..|||++|+.+++||+.|++|+.||.||.+||+|.
T Consensus 198 iGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYl 276 (536)
T KOG0500|consen 198 IGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYL 276 (536)
T ss_pred ccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 998 45788999999999999999999999999999654 4556899999999999999999999999999999999
Q ss_pred hhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEE
Q 008660 375 LLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLE 454 (558)
Q Consensus 375 ~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~ 454 (558)
|.+++..+|+++++.||+.||.||+.+++.+.|+++++|+++.+.++.+|+.++++++|.|||+|+++||.+.+||+|.+
T Consensus 277 wa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~ 356 (536)
T KOG0500|consen 277 WAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKE 356 (536)
T ss_pred HhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhh
Q 008660 455 GQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529 (558)
Q Consensus 455 G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~ 529 (558)
|.+++..++|.++...+++|++|||.++. +-++. -+...|++++++++++++++|+|+|+.+.+++||+-+
T Consensus 357 G~L~Vv~dDg~t~~~~L~~G~~FGEisIl---ni~g~-~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 357 GKLAVVADDGVTVFVTLKAGSVFGEISIL---NIKGN-KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred cEEEEEecCCcEEEEEecCCceeeeeEEE---EEcCc-ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHH
Confidence 99999998887788999999999999773 43311 1223489999999999999999999999999999864
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-64 Score=509.88 Aligned_cols=445 Identities=17% Similarity=0.238 Sum_probs=356.8
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhhceeccc
Q 008660 15 VLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKEN 94 (558)
Q Consensus 15 ii~P~s~~~~~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~ 94 (558)
||.-.+.|+.+||-+++++.+|+.+++ ||+.+|.........|.++|.++|++|++||++||+|.|+.|
T Consensus 209 IiLHYcaFKt~WDWvIL~LTFYTAimV----------PyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGP- 277 (971)
T KOG0501|consen 209 IILHYCAFKTIWDWVILILTFYTAIMV----------PYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGP- 277 (971)
T ss_pred EEEeeehhhhHHHHHHHHHHHHHHhee----------eeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecC-
Confidence 455568899999988888776655544 455666655545678999999999999999999999999986
Q ss_pred hhhhhhhhhhhccccccCCceecChhHHh----hhhhhhhhhhhccccceeeeeeccCCCCcch-hhHHHHHHHHhHHHh
Q 008660 95 QRKKFKHLWQQLKNFKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTA-MTFFVLQYLLRVIRT 169 (558)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~-~~~~~l~rl~Rl~r~ 169 (558)
.|++|.||+.|+ |+||++|++||+|+|.+..+-... .+-.+ ...++..||+||-|+
T Consensus 278 -----------------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--egI~SLFSaLKVVRLLRLGRV 338 (971)
T KOG0501|consen 278 -----------------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EGIGSLFSALKVVRLLRLGRV 338 (971)
T ss_pred -----------------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999 999999999999999876542111 11111 123344444555554
Q ss_pred hhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCCcccccccc
Q 008660 170 YFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLN 249 (558)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sW~~ 249 (558)
.|-+..+.+.. -+.+++++..|.+++||+||+||.+|-.+. ...-.+.-..++|+.
T Consensus 339 aRKLD~YlEYG-------AA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~ 394 (971)
T KOG0501|consen 339 ARKLDHYLEYG-------AAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLW 394 (971)
T ss_pred HHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHH
Confidence 44444333221 124567778889999999999999994211 000011223468887
Q ss_pred ccCCCCCCCCCccccchhhhhhhcCc-cccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 008660 250 DSCPISTGNTTRYNFGIYKDALQSGI-VRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVF 328 (558)
Q Consensus 250 ~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~ 328 (558)
.... +.+++|+|..- ..|. +..+|....|+.|+||.++.|||||+|+|.|.|+.|++|++.+|++|+.+||.
T Consensus 395 kLa~---~~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAt 467 (971)
T KOG0501|consen 395 KLAN---DIGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYAT 467 (971)
T ss_pred HHHh---hcCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 6543 23455554310 1111 23577788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHH
Q 008660 329 LIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGR 404 (558)
Q Consensus 329 iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~ 404 (558)
|+|+++.+ .++.+.+.+.++.+.+||+-..+|+.|.+||.+|.--.|...+|+|.+++|+-.|..+|.+|..|+++
T Consensus 468 IFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNR 547 (971)
T KOG0501|consen 468 IFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNR 547 (971)
T ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecch
Confidence 99999944 44555677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhh
Q 008660 405 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDW 484 (558)
Q Consensus 405 ~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~ 484 (558)
+.++..|-|+-.++.++++|+..++.....|||.|+..||..|.+.||++|.++|.+++. ++.++++|+.||+.+.-
T Consensus 548 KVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE--VVAILGKGDVFGD~FWK- 624 (971)
T KOG0501|consen 548 KVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE--VVAILGKGDVFGDEFWK- 624 (971)
T ss_pred hhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc--EEEEeecCccchhHHhh-
Confidence 999999999999999999999999999999999999999999999999999999988765 58999999999998652
Q ss_pred hhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 485 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 485 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+ . ....+.++|+|+|+|++..|.|+.+.++++-|.++++
T Consensus 625 --~-~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFan 663 (971)
T KOG0501|consen 625 --E-N----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFAN 663 (971)
T ss_pred --h-h----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 1 1 1112678899999999999999999999999998764
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-58 Score=462.80 Aligned_cols=413 Identities=17% Similarity=0.197 Sum_probs=349.9
Q ss_pred hccCCC-hHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHH-Hhhhhceec
Q 008660 15 VLYRKA-IAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHIS-SELREADKK 92 (558)
Q Consensus 15 ii~P~s-~~~~~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~-l~f~t~y~~ 92 (558)
-|||.. ++...|-.++.++-.++++++|+..-+|+.++.+. ..|.+.|+++|+++++||+ ++-|.-|.
T Consensus 219 sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~---------~~Wli~Dy~cDiIYllDmlf~q~Rl~fv- 288 (815)
T KOG0499|consen 219 SIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNI---------HYWLIADYICDIIYLLDMLFIQPRLQFV- 288 (815)
T ss_pred ccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccc---------hhhhhHHHHhhHHHHHHHhhhhhhheee-
Confidence 478998 99999999999999999999999877777664331 2589999999999999997 67777777
Q ss_pred cchhhhhhhhhhhccccccCCceecChhHHh-----hhhhhhhhhhhccccceeeeeeccCCCCcchhhHHHHHHHHhHH
Q 008660 93 ENQRKKFKHLWQQLKNFKGGREVLEDPMVRM-----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVI 167 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~-----~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~ 167 (558)
..|.+|.|.+... +..|-+|++|++|+|++++.+... . +.|++|++
T Consensus 289 ------------------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~--------p---~wR~~R~l 339 (815)
T KOG0499|consen 289 ------------------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN--------P---MWRANRML 339 (815)
T ss_pred ------------------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc--------h---hhhhhhHH
Confidence 6899999998888 889999999999999887653221 1 23777777
Q ss_pred HhhhhhHhhHhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCCccccc
Q 008660 168 RTYFLFTDAIEVSGVIADATWGIFAFYVLLYL-QSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK 246 (558)
Q Consensus 168 r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 246 (558)
++-.++...+...+++......+ +.....|| ++.|+.||+||..+-. .+.+...
T Consensus 340 K~~sF~e~~~~Le~i~s~~y~~R-V~rT~~YmlyilHinacvYY~~Say------------------------qglG~~r 394 (815)
T KOG0499|consen 340 KYTSFFEFNHHLESIMSKAYIYR-VIRTTGYLLYILHINACVYYWASAY------------------------QGLGTTR 394 (815)
T ss_pred HHHHHHHHHHHHHHHhcchhhhh-hHHHHHHHHHHHhhhHHHHHHHHhh------------------------cccccce
Confidence 77766655444444333333334 44444444 4699999999998731 2345678
Q ss_pred cccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHH
Q 008660 247 LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLF 326 (558)
Q Consensus 247 W~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~f 326 (558)
|+.+. -...|++|+|||+-|++|+|- ...|.|..|++|..+.-+.|+++|
T Consensus 395 WVydg-----------------------------~Gn~YiRCyyfa~kt~~tiG~-~P~P~~~~E~Vf~~~~w~mGVFvF 444 (815)
T KOG0499|consen 395 WVYDG-----------------------------EGNEYIRCYYFAVKTLITIGG-LPEPQTLFEIVFQLLNWFMGVFVF 444 (815)
T ss_pred eEEcC-----------------------------CCCceeeehhhHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHH
Confidence 98541 124699999999999999996 667899999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHH
Q 008660 327 VFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHF 402 (558)
Q Consensus 327 a~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 402 (558)
|.+||.|- +.+++.++|++.|+..-.||++.++|++.|+|||.+|+|.|.+++..||.++++.||..||.+++..+
T Consensus 445 slliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V 524 (815)
T KOG0499|consen 445 SLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDV 524 (815)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEe
Confidence 99999988 45667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCeeehhh
Q 008660 403 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCGEEI 481 (558)
Q Consensus 403 ~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~fGe~~ 481 (558)
+-.++.++.+|++|+.+.+..++.+++..+|.|||.|++.||++.+||+|..|+|+|.. .+|..++.++.+|++|||.+
T Consensus 525 ~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEIS 604 (815)
T KOG0499|consen 525 NYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEIS 604 (815)
T ss_pred ehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999876 66777889999999999997
Q ss_pred hhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhh
Q 008660 482 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF 528 (558)
Q Consensus 482 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~ 528 (558)
+. .- ++...|+++|+|.++|.|++|+++|+.+++.+||+-
T Consensus 605 LL---ai----gG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~s 644 (815)
T KOG0499|consen 605 LL---AI----GGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDS 644 (815)
T ss_pred ee---ee----cCCCccchhhhhcccceeeEecHhHHHHHHHhCccH
Confidence 73 21 222239999999999999999999999999999985
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.45 E-value=6.4e-13 Score=136.28 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=112.3
Q ss_pred eeehhhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhhhccccccCCceecChhHHhhhhhhhhhhhhccccceeeee
Q 008660 65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIF 144 (558)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~~i~~~~ 144 (558)
..+.+++.++-+.|-+..+++|-.+-- +-+-+. +.-=++|++|++||.+-....
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~~P~--------------------k~~F~k------~pLNIIDllAIlPFYielll~ 293 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLVAPN--------------------KLEFFK------SPLNIIDLLAILPFYLELLLT 293 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCch--------------------HHHHHh------CcchHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999975321 111222 223358999999986432111
Q ss_pred eccCCCCcc--h-hhHHHHHHHHhHHHhhhhhHhhHhhh--h-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 008660 145 PIRDTGFST--A-MTFFVLQYLLRVIRTYFLFTDAIEVS--G-VIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKAT 218 (558)
Q Consensus 145 ~~~~~~~~~--~-~~~~~l~rl~Rl~r~~~l~~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~ 218 (558)
.....+... . ..+++++|++|++|++|+.|.-.-.. + -++.+ ...+..+++...+.+-++|-+-|++-...
T Consensus 294 ~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S-~~ElglLllfL~~GI~iFStlvY~~Ek~~-- 370 (477)
T KOG3713|consen 294 LFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRS-YRELGLLLLFLAVGIVIFSTLVYFAEKDE-- 370 (477)
T ss_pred HhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC--
Confidence 111100111 1 25677777888888888776432221 1 12222 12222222222333566666666643210
Q ss_pred hhHHHhhcccCCCCCcceecCCCccccccccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcc
Q 008660 219 DCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSA 298 (558)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~tt 298 (558)
+ +++ ++.-=.|++||+.||||
T Consensus 371 -----------------------~----------------~~~--------------------FtSIPa~~WWaiVTMTT 391 (477)
T KOG3713|consen 371 -----------------------P----------------DTK--------------------FTSIPAGFWWAVVTMTT 391 (477)
T ss_pred -----------------------C----------------CCC--------------------CccccchhheeeEEEee
Confidence 0 000 11112489999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 299 FGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 334 (558)
Q Consensus 299 vGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 334 (558)
|||||++|.|..-++++..+.+.|+++-|.=|..|-
T Consensus 392 VGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv 427 (477)
T KOG3713|consen 392 VGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIV 427 (477)
T ss_pred ecccCccccccchHHHHHHHHHHhHHHhhcchHhHh
Confidence 999999999999999999999999999998666665
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.44 E-value=7.3e-13 Score=125.36 Aligned_cols=194 Identities=15% Similarity=0.197 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhhhccccccCCceecChhHHhhhhhhhhhhhhccccceeeeeeccC
Q 008660 69 VIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRD 148 (558)
Q Consensus 69 ~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~~i~~~~~~~~ 148 (558)
++|.+++++|.+|+++++++... . +++-..+.|.++|+++++|..........+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-------------------~------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~ 55 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-------------------K------RRRYFRSWWNWFDFISVIPSIVSVILRSYGS 55 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-------------------G-------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-------------------H------HHHHhcChhhccccccccccccccccccccc
Confidence 36889999999999999997554 1 1111117788899999999854432211110
Q ss_pred CCCcchhhHHHHHHHHhHHHhhhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhccc
Q 008660 149 TGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENH 228 (558)
Q Consensus 149 ~~~~~~~~~~~l~rl~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~ 228 (558)
..........+++|++|++|+.+..+.+.+....+. .....+...++.++++.|+.||+++.+.....+.|
T Consensus 56 ~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~-------- 126 (200)
T PF00520_consen 56 ASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSC-------- 126 (200)
T ss_dssp -HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred ccccceEEEEEeeccccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccc--------
Confidence 000011233444444444444444443333322222 22234445555666779999999988874211110
Q ss_pred CCCCCcceecCCCccccccccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCC-
Q 008660 229 TGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSD- 307 (558)
Q Consensus 229 ~~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~- 307 (558)
| ..++-... + ....+..+.|..|+||++.++|+.|+||+.+.
T Consensus 127 ---------~-----~~~~~~~~-------------~----------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~ 169 (200)
T PF00520_consen 127 ---------C-----DPTWDSEN-------------D----------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSC 169 (200)
T ss_dssp ------------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHH
T ss_pred ---------c-----cccccccc-------------c----------cccccccccccccccccccccccCCcccccccc
Confidence 0 00000000 0 01334567799999999999999999999987
Q ss_pred ----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 008660 308 ----DVGENIFA-IWMTIYGVVLFVFLIGRM 333 (558)
Q Consensus 308 ----t~~E~~~~-i~~mi~G~~~fa~iig~i 333 (558)
+..+.++. ++..+.+.++++.++|.|
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 170 MSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 88999999 566666668889999875
No 8
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.42 E-value=6.6e-12 Score=123.06 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=103.7
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhhh
Q 008660 405 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEII 482 (558)
Q Consensus 405 ~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~l 482 (558)
+.++.+|+|+.++++.+..+....+.+.|.+|+.|+++||.++.+|+|.+|.|.++. .++...+..+.+|++||+..+
T Consensus 7 ~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~ 86 (236)
T PRK09392 7 IRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAV 86 (236)
T ss_pred HHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHH
Confidence 578899999999999999999999999999999999999999999999999999654 455556779999999999866
Q ss_pred hhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhh
Q 008660 483 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 531 (558)
Q Consensus 483 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~ 531 (558)
. ... ++..+++|.++|+++.+++++|.+++.++|++...
T Consensus 87 ~---~~~-------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~ 125 (236)
T PRK09392 87 V---LDA-------PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRA 125 (236)
T ss_pred h---CCC-------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHH
Confidence 3 322 17789999999999999999999999999998653
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.37 E-value=1.2e-11 Score=105.47 Aligned_cols=109 Identities=19% Similarity=0.301 Sum_probs=94.1
Q ss_pred CCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhcc
Q 008660 412 KFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQ 488 (558)
Q Consensus 412 ~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~ 488 (558)
+|+.++++.+..++..++.+.+.+|+.|+.+|+..+.+|+|.+|.+.+.. .+ +...+..+.+|++||+..+. ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~---~~ 77 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALL---GN 77 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHh---cC
Confidence 47889999999999999999999999999999999999999999999654 22 23456789999999998652 22
Q ss_pred CCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 489 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 489 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
. .+..+++|.++|+++.+++++|.++++++|++..
T Consensus 78 ~-------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 78 G-------PRSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred C-------CCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 1 1678899999999999999999999999999854
No 10
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.34 E-value=1.7e-11 Score=100.72 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=74.9
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCce-EEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEec
Q 008660 430 PVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKL-IGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 506 (558)
Q Consensus 430 ~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~-~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 506 (558)
++.|.+|++|+++|+.++++|||.+|.+.+.. .++. ..+..+++|++||+..+. .+.+ +..+++|.+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~~~~--------~~~~~~a~~ 70 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELL--TGKP--------SPFTVIALT 70 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHH--HTSB--------BSSEEEESS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeec--CCCc--------cEEEEEEcc
Confidence 36799999999999999999999999999655 3343 346799999999998663 2222 789999999
Q ss_pred eEEEEEEcHHHHHHHHHHhHh
Q 008660 507 NVEGFTLKTDELKHGIALHRR 527 (558)
Q Consensus 507 ~~~l~~L~~~~f~~ll~~~p~ 527 (558)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999996
No 11
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.33 E-value=4.6e-11 Score=114.92 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehhhhhhhhccCC
Q 008660 414 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEEIIDWAENQSS 490 (558)
Q Consensus 414 ~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~ 490 (558)
+.++++.++.++..++.+.|.+|++|+.+|+.++.+|||.+|.++++. . ++...+..+++|++||+..+. ...
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~---~~~- 81 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF---EEG- 81 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhc---cCC-
Confidence 468999999999999999999999999999999999999999999653 3 344456789999999998663 221
Q ss_pred CCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 491 SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 491 ~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+++..+++|.++|+++.+++++|.++++++|++..
T Consensus 82 -----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 116 (211)
T PRK11753 82 -----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 116 (211)
T ss_pred -----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHH
Confidence 12677899999999999999999999999999853
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.27 E-value=1.3e-10 Score=99.59 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=93.7
Q ss_pred CCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehhhhhhhhcc
Q 008660 412 KFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEEIIDWAENQ 488 (558)
Q Consensus 412 ~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~~l~~~l~~ 488 (558)
+|.+++++.+++++..++.+.|.+|++|+++|+..+.+|||.+|.+.+.. +++...+..+.+|++||+..+. ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~---~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALL---TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhc---cC
Confidence 47889999999999999999999999999999999999999999999654 3334456799999999998662 11
Q ss_pred CCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhh
Q 008660 489 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529 (558)
Q Consensus 489 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~ 529 (558)
...++..++.|.+.|+++.++.+++.+....+|.+.
T Consensus 78 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 113 (120)
T smart00100 78 -----SRRAASATAVALELATLLRIDFRDFLQLLQENPQLL 113 (120)
T ss_pred -----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHH
Confidence 111267889999999999999999999999999874
No 13
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.27 E-value=5e-12 Score=129.36 Aligned_cols=120 Identities=22% Similarity=0.360 Sum_probs=105.1
Q ss_pred HHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc----CceEEEEEecCCCe
Q 008660 401 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK----SKLIGLKRQEDGNY 476 (558)
Q Consensus 401 ~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~----~~~~~~~~l~~G~~ 476 (558)
+-+.++|+++|+|+++|++.+.+++..++...|..|++|+++|+.++.+|+|.+|.|.+... +....+..+..|++
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 44568899999999999999999999999999999999999999999999999999998662 22334679999999
Q ss_pred eehhhhhhhhccCCCCCCCCccccEEEEece-EEEEEEcHHHHHHHHHHhHhhhh
Q 008660 477 CGEEIIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 477 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
|||.++. +.. .|++++.|... ++++.|+|+.|.+++-...++.+
T Consensus 348 FGE~al~---~ed-------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 348 FGERALL---GED-------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred hhHHHhh---ccC-------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 9999883 332 38999999988 99999999999999988888764
No 14
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=3.9e-11 Score=117.93 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=96.6
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 483 (558)
.+.+++.-+|++++++.+.++...|.++.+..|+.|+++|+.++.+|+|.+|+++|+..+. .+..+++|..|||.++.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~--~v~~~~~g~sFGElALm 198 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT--YVTTYSPGGSFGELALM 198 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe--EEeeeCCCCchhhhHhh
Confidence 3567788899999999999999999999999999999999999999999999999987543 47899999999999885
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHH
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIA 523 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~ 523 (558)
+ +. +|.+|++|.+++.+|.|++..|..++-
T Consensus 199 y--n~--------PRaATv~a~t~~klWgldr~SFrrIi~ 228 (368)
T KOG1113|consen 199 Y--NP--------PRAATVVAKSLKKLWGLDRTSFRRIIM 228 (368)
T ss_pred h--CC--------CcccceeeccccceEEEeeceeEEEee
Confidence 2 33 399999999999999999999987753
No 15
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.20 E-value=5.6e-12 Score=123.17 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=38.8
Q ss_pred HHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 008660 288 CLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLI 330 (558)
Q Consensus 288 slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~ii 330 (558)
|++||++|||||||||..|.|..-+++..++.+.|+.--|.-+
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV 439 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccc
Confidence 8999999999999999999999999999999999987666533
No 16
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.19 E-value=5.4e-10 Score=109.40 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=92.9
Q ss_pred hcCCcCCCCCCHHHHHHHHhcCee-EEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhh
Q 008660 407 LGQMQKFENWEDYSLDHLCGCLKP-VFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEII 482 (558)
Q Consensus 407 l~~i~~F~~~~~~~l~~L~~~l~~-~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l 482 (558)
+++.+.|..++++.++.|....+. ..|.+||.|+++||.++.+|+|.+|.|+++. .+| ...+..+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 445555557999999999988864 6799999999999999999999999999655 334 334567799999998655
Q ss_pred hhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 483 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 483 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
. ... ...+++|.++|+++.+++++|.+++.++|++..
T Consensus 95 ~---~~~--------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~ 131 (235)
T PRK11161 95 G---SGQ--------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQ 131 (235)
T ss_pred c---CCC--------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHH
Confidence 2 222 345799999999999999999999999999864
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.18 E-value=2e-11 Score=124.95 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCe
Q 008660 397 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNY 476 (558)
Q Consensus 397 ~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~ 476 (558)
.=..++-++.+.+..|+++++.+.+++++..|.+..|.+|+.|+++||+++++|.+.+|+++|..++. .+..+++|..
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~--ll~~m~~gtv 223 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK--LLGKMGAGTV 223 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe--eeeccCCchh
Confidence 33456667888999999999999999999999999999999999999999999999999999887544 4789999999
Q ss_pred eehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhH
Q 008660 477 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHR 526 (558)
Q Consensus 477 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p 526 (558)
|||.++.+ +.+ |+++++|+++|.+|.|+|+-|+.++..--
T Consensus 224 FGELAILy--nct--------RtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 224 FGELAILY--NCT--------RTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred hhHHHHHh--CCc--------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99998864 433 99999999999999999999999986543
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.18 E-value=7.5e-10 Score=105.98 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=94.8
Q ss_pred cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhh
Q 008660 408 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDW 484 (558)
Q Consensus 408 ~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~ 484 (558)
.+.+.|...+.+....+....+.+.+.+|++|+.+||.++.+|+|.+|.+.+.. .+| ...+..+++|++||+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~- 81 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL- 81 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh-
Confidence 455677777888888888899999999999999999999999999999999655 333 4456689999999999773
Q ss_pred hhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 485 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 485 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
... ++..+++|.++|+++.+++++|.+++.+.|.+..
T Consensus 82 --~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~ 118 (214)
T COG0664 82 --GGD-------PRSASAVALTDVEVLEIPRKDFLELLAESPKLAL 118 (214)
T ss_pred --cCC-------CccceEEEcceEEEEEecHHHHHHHHhhCcHHHH
Confidence 221 2889999999999999999999999888888754
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.16 E-value=2.8e-10 Score=120.77 Aligned_cols=113 Identities=12% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI 481 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~ 481 (558)
.+.++++++|++++++.+++++..++.+.|.+||+|+++||.++.+|+|.+|.|++.. .+|+..+..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 3567899999999999999999999999999999999999999999999999999755 3445567789999999975
Q ss_pred hhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhh
Q 008660 482 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF 528 (558)
Q Consensus 482 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~ 528 (558)
+ .+.+ +..+++|.++|+++.|++++|+.+...++-.
T Consensus 86 l---~~~~--------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~ 121 (413)
T PLN02868 86 L---SGSV--------HSADVVAVSELTCLVLPHEHCHLLSPKSIWD 121 (413)
T ss_pred h---CCCC--------cccEEEECCCEEEEEEcHHHHhhhccccccc
Confidence 4 2322 7889999999999999999999887665443
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=4.5e-10 Score=116.86 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=102.8
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 483 (558)
.+.+.+.|.|..++++.+.+|...++...|.+||.|...|.+.+.+|+|.+|.|++..++|. .+..+..|+.||-..+.
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-v~~~~~~gdlFg~~~l~ 84 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-VLDRLAAGDLFGFSSLF 84 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-eeeeeccCccccchhhc
Confidence 46788999999999999999999999999999999999999999999999999999998886 58899999999998773
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhh
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~ 529 (558)
... . ....+.|.+++-+|.|+++.|+++++++|+++
T Consensus 85 ---~~~-----~--~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~ 120 (610)
T COG2905 85 ---TEL-----N--KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFA 120 (610)
T ss_pred ---ccC-----C--CcceeEeeccceEEecCHHHHHHHHHhCcHHH
Confidence 211 1 34457888899999999999999999999994
No 21
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.14 E-value=5e-10 Score=109.06 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=83.9
Q ss_pred HHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCcc
Q 008660 422 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS 498 (558)
Q Consensus 422 ~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r 498 (558)
.++....+.+.|.+|+.|+++||.++.+|||.+|.|.+.. .+| ...+..+.+|++||+..+. ... ++
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~---~~~-------~~ 94 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELI---DKD-------HE 94 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhh---cCC-------CC
Confidence 3577788999999999999999999999999999999654 334 4456689999999998652 322 27
Q ss_pred ccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 499 TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 499 ~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
..+++|.++|+++.+++++|.+++.++|.+..
T Consensus 95 ~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~ 126 (226)
T PRK10402 95 TKAVQAIEECWCLALPMKDCRPLLLNDALFLR 126 (226)
T ss_pred CccEEEeccEEEEEEEHHHHHHHHhcCHHHHH
Confidence 78899999999999999999999999999864
No 22
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.12 E-value=5.5e-10 Score=89.69 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++...
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4777999999999999999999999999999999999999999999999986543
No 23
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.99 E-value=5.4e-10 Score=115.07 Aligned_cols=127 Identities=10% Similarity=0.128 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C
Q 008660 283 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDI--S 360 (558)
Q Consensus 283 ~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~l--p 360 (558)
..|..|+|+-++||+||||||+..+|..-+.|.++..+.|..+||--+-.|..+..+.+++--... .---++++ -
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk---~ehgkkhivvc 363 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYK---AEHGKKHIVVC 363 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceee---hhcCCeeEEEe
Confidence 459999999999999999999999999999999999999999999888888866544433211000 00000000 0
Q ss_pred HH-HHHHHHHHHH-HHhhhhcCCC-HHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCC
Q 008660 361 TF-VRAKIREAKR-ENLLLKHDIH-IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFEN 415 (558)
Q Consensus 361 ~~-L~~rv~~y~~-~~~~~~~~~~-~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~ 415 (558)
.+ ..+.|-.|++ +..+....++ |--++...||+|.-| .++++.+.++.+|++
T Consensus 364 ghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 364 GHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred cceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 00 1223333333 3333333444 445688899988755 567788888999975
No 24
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.1e-08 Score=105.77 Aligned_cols=88 Identities=15% Similarity=0.230 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCC
Q 008660 281 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE-TTRAHKINQKLRQIKHWKHFKDI 359 (558)
Q Consensus 281 ~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~-~~~~~~~~~~~~~i~~~m~~~~l 359 (558)
-+.-|..|++|++.|+|||||||.+|.|..-++.+.++.++|..+||.--|.++|- ..+.+|.+ .=++|-+.++.
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~----RQKHf~rrr~p 341 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH----RQKHFNRRRNP 341 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH----HHHHHHhhcch
Confidence 45679999999999999999999999999999999999999999999988888843 23333322 22566677777
Q ss_pred CHHHHHHHHHHHH
Q 008660 360 STFVRAKIREAKR 372 (558)
Q Consensus 360 p~~L~~rv~~y~~ 372 (558)
-.+|.+-.-+||.
T Consensus 342 AA~LIQc~WR~ya 354 (654)
T KOG1419|consen 342 AASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHHHHHHh
Confidence 7788777776665
No 25
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.92 E-value=1.6e-08 Score=95.60 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=71.2
Q ss_pred CCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEE
Q 008660 436 RTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFT 512 (558)
Q Consensus 436 ge~I~~~G~~~~~myfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~ 512 (558)
|+.|+++||.++.+|+|.+|.|++.. .+ ++..+..+++|++||+..+. ... ..++..+++|.++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~---~~~-----~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLI---TGH-----RSDRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeec---cCC-----CCccceEEEEecceEEEE
Confidence 78999999999999999999999654 43 34446799999999998662 221 111456799999999999
Q ss_pred EcHHHHHHHHHHhHhhhh
Q 008660 513 LKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 513 L~~~~f~~ll~~~p~~~~ 530 (558)
+++++|.+++.++|++..
T Consensus 73 i~~~~~~~l~~~~p~l~~ 90 (193)
T TIGR03697 73 VPIEQVEKAIEEDPDLSM 90 (193)
T ss_pred eeHHHHHHHHHHChHHHH
Confidence 999999999999999864
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=3.2e-09 Score=104.69 Aligned_cols=117 Identities=14% Similarity=0.288 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCeee
Q 008660 400 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 400 ~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~fG 478 (558)
..+|.+.|+++|+++.+.......++..+.+..|.+|+.|..+|+.++.+|+|.+|+|.+.. .+| ..+ .++.|++||
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~-v~v-kl~~~dyfg 312 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG-VEV-KLKKGDYFG 312 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC-eEE-Eechhhhcc
Confidence 46788899999999999999999999999999999999999999999999999999999755 344 344 999999999
Q ss_pred hhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhh
Q 008660 479 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF 528 (558)
Q Consensus 479 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~ 528 (558)
|.++. .+.+ |.++|.|.+...+..+++..|+.++.-.-++
T Consensus 313 e~al~--~~~p--------r~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 313 ELALL--KNLP--------RAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred hHHHH--hhch--------hhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 99874 2332 8999999999999999999999998766554
No 27
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.88 E-value=3.6e-08 Score=96.19 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=80.2
Q ss_pred HHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCcc
Q 008660 422 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS 498 (558)
Q Consensus 422 ~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r 498 (558)
..+....+.+.|.+|+.|+.+||.++.+|||.+|.|.++. .+| +..+..+.+|++||+.. ..+ +
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~-----~~~--------~ 98 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES-----GST--------H 98 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC-----CCc--------C
Confidence 3556678889999999999999999999999999999654 344 33456789999999631 111 5
Q ss_pred ccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 499 TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 499 ~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
..+++|+++|+++.+++++|.+++..+|++..
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~ 130 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVAR 130 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHH
Confidence 68899999999999999999999999999865
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.80 E-value=1e-07 Score=90.92 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=66.8
Q ss_pred cCeeEEeCCCCEEEccCC--ccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccE
Q 008660 427 CLKPVFFSERTTIISEGE--SIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRT 501 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~--~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~t 501 (558)
..+...|.+|++|+++|| .++.+|+|.+|.|.++. .+| +..+..+.+|++||+.++. ..+ ++.+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~---~~~--------~~~~ 73 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA---GAE--------RAYF 73 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc---CCC--------CCce
Confidence 467788999999999999 77999999999999654 333 4456688999999997552 322 6788
Q ss_pred EEEeceEEEEEEcHHHH
Q 008660 502 IIAHTNVEGFTLKTDEL 518 (558)
Q Consensus 502 v~A~~~~~l~~L~~~~f 518 (558)
+.|.++|+++.+++++|
T Consensus 74 ~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 74 AEAVTDSRIDVLNPALM 90 (202)
T ss_pred EEEcCceEEEEEEHHHc
Confidence 99999999999998876
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.40 E-value=4.2e-06 Score=87.52 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 335 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 335 (558)
.+..|+||++.|+||+||||+.|.|...+++++++++.|..+|++.++.+..
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667999999999999999999999999999999999999999999998874
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.26 E-value=1e-07 Score=94.45 Aligned_cols=45 Identities=11% Similarity=0.301 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 008660 286 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLI 330 (558)
Q Consensus 286 ~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~ii 330 (558)
-.++++.++||||.||||.+|.|..-++|..++-+.|+.+.|.-+
T Consensus 358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 358899999999999999999999999999999999998877643
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.98 E-value=1e-05 Score=88.41 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=85.5
Q ss_pred HHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEE-EEE-cCceE-EEEEecCCCeeehhhhhhhhccCCCCCCC
Q 008660 419 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQIS-IYS-KSKLI-GLKRQEDGNYCGEEIIDWAENQSSSHGHL 495 (558)
Q Consensus 419 ~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~-v~~-~~~~~-~~~~l~~G~~fGe~~l~~~l~~~~~~~~~ 495 (558)
.+++.+=..+......||+.++++||.++++|+|..|.++ +.. .+++. .+..++.|+.+|+.... ...+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~l--t~~~------ 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEML--TKQP------ 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHh--hcCC------
Confidence 3677777788899999999999999999999999999999 444 33332 35689999999998442 2333
Q ss_pred CccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 496 PISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 496 ~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
|..|+.|+.++|+.+|+..-|..+..+||.+-.
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~ 603 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVT 603 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHH
Confidence 889999999999999999999999999999854
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.002 Score=66.45 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 281 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 334 (558)
Q Consensus 281 ~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 334 (558)
....|+.|++....|..++||||++|.|.--+..+++.-++|+.+-|.+++-++
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvis 337 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIA 337 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999887
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.62 E-value=0.00033 Score=71.64 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhhhcccccCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 283 KKLLRCLHWGLQKLSAFGQDL--ETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSET 337 (558)
Q Consensus 283 ~~Y~~slYwa~~T~ttvGyGd--i~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~ 337 (558)
..+..+++||+.|+||+|||. ++|....-.+..++=+++|.++.|+++|-+-+-.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999 5676667777778888999999999999876433
No 34
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.39 E-value=0.00012 Score=57.56 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=29.3
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHhhccee
Q 008660 13 IIVLYRKAIAAAIENKRYLLLNVIAMILDPFF 44 (558)
Q Consensus 13 ~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~p~~ 44 (558)
.|||||.|+++.+||.++++++++++++.|+.
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~ 67 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFR 67 (77)
T ss_pred CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47999999999999999999999999998853
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00025 Score=75.45 Aligned_cols=54 Identities=11% Similarity=0.287 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
+..|+|++.+++||+|||+++|.|...++++|+..++|.-++..++++++....
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~ 169 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLA 169 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999999996544
No 36
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.27 E-value=0.0017 Score=71.70 Aligned_cols=129 Identities=13% Similarity=0.086 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCce
Q 008660 389 DLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKL 465 (558)
Q Consensus 389 ~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~---~~~~ 465 (558)
..|..++.|+..-+..--+-.-|.|- +++.+++...+..||+|++.|+..+.+|.+.+|.+++.- +++.
T Consensus 84 ~i~~~~~~eil~~L~~i~~~EkP~fl--------~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~ 155 (1158)
T KOG2968|consen 84 RIPSHLQPEILYMLSAIRILEKPVFL--------ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKE 155 (1158)
T ss_pred cccccCchHHHHHHHHhHhhccceee--------eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCce
Confidence 34555666655443221111334433 344788889999999999999999999999999999654 3333
Q ss_pred EEEEEecCCCeeehh-hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhh
Q 008660 466 IGLKRQEDGNYCGEE-IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529 (558)
Q Consensus 466 ~~~~~l~~G~~fGe~-~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~ 529 (558)
..+..+.+|+-|--. .+ ++.. +....+.++..++|.++|.+..++...|.+...+||+-.
T Consensus 156 ~llk~V~~G~~~tSllSi---Ld~l-~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~ 216 (1158)
T KOG2968|consen 156 YLLKTVPPGGSFTSLLSI---LDSL-PGFPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPESS 216 (1158)
T ss_pred eeEeeccCCCchHhHHHH---HHhc-cCCCcccceeeeeeecCceEEEeccchhhhhhccChHHH
Confidence 346689999777654 33 2332 222224567779999999999999999999999999953
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.04 E-value=0.02 Score=54.07 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHHHHHHhcCeeEEeCCCCEE-EccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCc
Q 008660 419 YSLDHLCGCLKPVFFSERTTI-ISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPI 497 (558)
Q Consensus 419 ~~l~~L~~~l~~~~y~~ge~I-~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~ 497 (558)
..++.+.+.-++..+.+|..+ ....+..+..+++.+|.|.+...++ ..+.+..+...||-.... .+. .
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~-ll~~t~~aP~IlGl~~~~---~~~-------~ 81 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN-VLIGITQAPYIMGLADGL---MKN-------D 81 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC-eEEEeccCCeEeeccccc---CCC-------C
Confidence 356677777888899999997 5444444679999999999966555 457788888999964321 221 0
Q ss_pred cccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 498 STRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 498 r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.....+|.++|+++.+++++|.++++++.=+++
T Consensus 82 ~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~ 114 (207)
T PRK11832 82 IPYKLISEGNCTGYHLPAKQTITLIEQNQLWRD 114 (207)
T ss_pred ceEEEEEcCccEEEEeeHHHHHHHHHHhchHHH
Confidence 346799999999999999999999998876644
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.98 E-value=0.043 Score=48.66 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=94.9
Q ss_pred CCHHHHHHHHhc-CeeEEeCCCCEEEccC-CccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCC
Q 008660 416 WEDYSLDHLCGC-LKPVFFSERTTIISEG-ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHG 493 (558)
Q Consensus 416 ~~~~~l~~L~~~-l~~~~y~~ge~I~~~G-~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~ 493 (558)
.|...-++|+.. .+.....+|+.-.-|| .+.|.+-++++|.+.|..++. .+..+.+-++..--... .....
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~--fLH~I~p~qFlDSPEW~-s~~~s---- 87 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGR--FLHYIYPYQFLDSPEWE-SLRPS---- 87 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCE--eeEeecccccccChhhh-ccccC----
Confidence 567777777777 6667799999998888 467899999999999887654 36777777776532221 01111
Q ss_pred CCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 008660 494 HLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRR 552 (558)
Q Consensus 494 ~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~~~~~~~~~r~~~~~~~~~~~~ 552 (558)
....-..|+.|.+.|..++.+|+.+..++.+.|-+++ +|.....+-.+.|-.+++++
T Consensus 88 ~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~--vF~~liGkDI~~KLy~ln~~ 144 (153)
T PF04831_consen 88 EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA--VFSNLIGKDIAEKLYSLNEK 144 (153)
T ss_pred CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH--HHHHHHHHHHHHHHHHhhhH
Confidence 1112467899999999999999999999999999854 66666677777777777664
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0082 Score=59.33 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhcccccCCCCCC-------ChhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSD-------DVGEN-IFAIWMTIYGVVLFVFLIGRMQ 334 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~-------t~~E~-~~~i~~mi~G~~~fa~iig~i~ 334 (558)
|..|+|+.+.|+||+|+||.+|- +..++ .++.+.+++|..+++..++-+.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nllv 244 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLV 244 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999873 23444 4556677788888887777666
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.0028 Score=62.55 Aligned_cols=50 Identities=12% Similarity=0.322 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 334 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 334 (558)
..-|+|||.+.+||+|||-.+|.|+.-++|+|+-.++|+-+--..+.+++
T Consensus 81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 44599999999999999999999999999999999999866555555554
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.07 E-value=0.14 Score=52.11 Aligned_cols=55 Identities=11% Similarity=0.304 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSD--DVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~--t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
....++-|++-|=||+|||-=.++ -..-++..++=+++|+++-|+++|.+-+-.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKia 168 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIA 168 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355688899999999999985442 2334444566678999999999999875544
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=93.46 E-value=0.016 Score=61.52 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGEN--------IFAIWMTIYGVVLFVFLI 330 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~--------~~~i~~mi~G~~~fa~ii 330 (558)
-|+.|+|++++|+||+|+||++|.+...+ ....+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 47889999999999999999999888766 567777777777776655
No 43
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.39 E-value=2.6 Score=47.94 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=69.9
Q ss_pred hhhhhhccCCChHHH---------HHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHH
Q 008660 10 IIIIIVLYRKAIAAA---------IENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLL 80 (558)
Q Consensus 10 ~~~~~ii~P~s~~~~---------~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~ 80 (558)
.--..++.|+++|+. ..|.++++++.++.+.+-+. ...+..-.+.-..+.+-|+++-.+|+.
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale---------rp~i~~~s~EriFltlsnyIFtaIfV~ 1171 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE---------RPAIVEGSTERIFLTLSNYIFTAIFVV 1171 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc---------ccccccCcceEEEEEecchHHHHHHHH
Confidence 334568899999884 44555555554444332211 111111122234556667999999999
Q ss_pred HHHHhhhh-ceeccchhhhhhhhhhhccccccCCceecChhHHhhhhhhhhhhhhcc--ccceeeeeeccCCCCcchhhH
Q 008660 81 HISSELRE-ADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILP--IPQVLVIFPIRDTGFSTAMTF 157 (558)
Q Consensus 81 Di~l~f~t-~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP--~~~i~~~~~~~~~~~~~~~~~ 157 (558)
.+.++--. |.+ -|+ ..-..++|=.+|.+-++- +|.+... ..+...++
T Consensus 1172 Em~lKVVALGl~--------------------fge----~aYl~ssWN~LDgflv~vsviDilvs~------asa~g~kI 1221 (1956)
T KOG2302|consen 1172 EMTLKVVALGLY--------------------FGE----QAYLRSSWNVLDGFLVAVSVIDILVSQ------ASAGGAKI 1221 (1956)
T ss_pred HHHHHHHhhhhc--------------------cch----HHHHHHHHHhhhHHHHHHHHHHHHHHH------hhhhhHHH
Confidence 99887543 322 111 112226676666543221 1222110 01111356
Q ss_pred HHHHHHHhHHHhhhhhHhhHhhhh
Q 008660 158 FVLQYLLRVIRTYFLFTDAIEVSG 181 (558)
Q Consensus 158 ~~l~rl~Rl~r~~~l~~~~~~~~~ 181 (558)
+..+|.+|++|.+|-+|.+.+..+
T Consensus 1222 LgVlrvLRlLRtlRpLRviSra~g 1245 (1956)
T KOG2302|consen 1222 LGVLRVLRLLRTLRPLRVISRAPG 1245 (1956)
T ss_pred HHHHHHHHHHHHhhHHHHHhhccc
Confidence 777777777777777776666543
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.32 E-value=0.18 Score=54.35 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=85.1
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEe-CCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFF-SERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEII 482 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y-~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l 482 (558)
.++..+.|-|.+++-...++||..|-.... ..|.+|+..|+.-+.-+.|++|.|++...+|+ ...+.-|+.||..--
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk--~e~l~mGnSFG~~PT 357 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGK--REELKMGNSFGAEPT 357 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCc--eEEeecccccCCCCC
Confidence 366788999999999999999998876654 58999999999999999999999998887774 467888999996422
Q ss_pred hhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhH
Q 008660 483 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHR 526 (558)
Q Consensus 483 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p 526 (558)
.+.+ . .....| .-+.+|+..++...|+-.++..-.
T Consensus 358 ---~dkq-y-m~G~mR----TkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 358 ---PDKQ-Y-MIGEMR----TKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ---cchh-h-hhhhhh----eecccceEEEeehhhHHHHHHHHH
Confidence 0111 0 000112 235789999999999988886543
No 45
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.86 E-value=0.29 Score=52.91 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEE
Q 008660 391 PDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKR 470 (558)
Q Consensus 391 p~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~ 470 (558)
|+.||......---..+++...|.|+-..-++.++...+.+.++.+.++++.|+.+++-|++++|.|-+.. . .
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g---q----i 95 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG---Q----I 95 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---c----e
Confidence 44444433322223467788999999999999999999999999999999999999999999999997642 1 3
Q ss_pred ecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEc
Q 008660 471 QEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLK 514 (558)
Q Consensus 471 l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~ 514 (558)
+-+..+||... +++ |++++--+..+|+.+++
T Consensus 96 ~mp~~~fgkr~-----g~~--------r~~nclllq~semivid 126 (1283)
T KOG3542|consen 96 YMPYGCFGKRT-----GQN--------RTHNCLLLQESEMIVID 126 (1283)
T ss_pred ecCcccccccc-----ccc--------cccceeeecccceeeee
Confidence 44555667531 222 77888888888888873
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=90.36 E-value=0.59 Score=49.42 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 286 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 334 (558)
Q Consensus 286 ~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 334 (558)
..|+|+.+.|.+||||||-.|.-..-.++.++++-++.++.---+..++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~ 267 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELG 267 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHH
Confidence 3589999999999999999996666666554444444443333333333
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=89.43 E-value=1.8 Score=39.94 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh--cCCCHHHHHhcC--CHHHHHHHHHHHHHHHhcCCcCCCCCCHHHH
Q 008660 346 KLRQIKHWKHFKDISTFVRAKIREAKRENLLLK--HDIHIDSLVSDL--PDDTAKQVKLHFGRNLLGQMQKFENWEDYSL 421 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~--~~~~~~~~l~~L--p~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l 421 (558)
-++++++|++ ++|++.++.+..||+-++.+. .|.+|+++.++| |.++-.|+..+.-.+..+.-|-+++.+...+
T Consensus 6 fL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii 83 (195)
T COG4709 6 FLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAII 83 (195)
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHH
Confidence 4778999987 899999999999999877653 467899999987 6777788877776666766677777665444
Q ss_pred HH
Q 008660 422 DH 423 (558)
Q Consensus 422 ~~ 423 (558)
..
T Consensus 84 ~~ 85 (195)
T COG4709 84 AL 85 (195)
T ss_pred HH
Confidence 33
No 48
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=86.46 E-value=3.6 Score=38.29 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--hcCCCHHHHHhcC--CHHHHHHHHHHH
Q 008660 345 QKLRQIKHWKHFKDISTFVRAKIREAKRENLLL--KHDIHIDSLVSDL--PDDTAKQVKLHF 402 (558)
Q Consensus 345 ~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~~l~~L--p~~Lr~~i~~~l 402 (558)
+-+++++++++ ++|++-++++.+||+-.... ..|.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 45788999997 69999999999999987765 3577899999997 667777766544
No 49
>PLN03223 Polycystin cation channel protein; Provisional
Probab=82.62 E-value=34 Score=41.10 Aligned_cols=23 Identities=13% Similarity=-0.214 Sum_probs=15.6
Q ss_pred eeehhhHHHHHHHHHHHHHHhhh
Q 008660 65 ITATVIRSILDFLKLLHISSELR 87 (558)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~ 87 (558)
..|.++|.+.-++.+.=|++-|.
T Consensus 1213 SfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1213 SGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777766553
No 50
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=77.95 E-value=4.9 Score=30.43 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=33.1
Q ss_pred EEeCCCCEEEccCCccc-eEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 431 VFFSERTTIISEGESIH-EMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y~~ge~I~~~G~~~~-~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+.||+..-..-.... ++++|++|++.+..+++ ...+++|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE---RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE---EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE---EeEccCCEEE
Confidence 45778887666555555 89999999999875443 5688998875
No 51
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.26 E-value=1.2e+02 Score=32.68 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHH-----HHHHhcCCcCCCCCCHHHHHHHHhcCe
Q 008660 389 DLPDDTAKQVKLHF-----GRNLLGQMQKFENWEDYSLDHLCGCLK 429 (558)
Q Consensus 389 ~Lp~~Lr~~i~~~l-----~~~~l~~i~~F~~~~~~~l~~L~~~l~ 429 (558)
..|..|+..+.... +++....-...+.+|+.+..+++..+.
T Consensus 260 kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh 305 (536)
T KOG0500|consen 260 KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVH 305 (536)
T ss_pred cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHH
Confidence 56666776665422 112222223344455555555554443
No 52
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=74.72 E-value=1.6e+02 Score=34.36 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHHHHhc----CCcCCCCCCHHHHHHHHhcC
Q 008660 388 SDLPDDTAKQVKLHFGRNLLG----QMQKFENWEDYSLDHLCGCL 428 (558)
Q Consensus 388 ~~Lp~~Lr~~i~~~l~~~~l~----~i~~F~~~~~~~l~~L~~~l 428 (558)
+.+|+.||.++..++....=. +-.+++.+|++...+++..+
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH
Confidence 469999999998877544321 12345567777777776654
No 53
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=72.74 E-value=9.3 Score=29.78 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.5
Q ss_pred ceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 447 HEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 447 ~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
++..+|++|+|.+...+|. ...+++|+.|
T Consensus 26 ~E~~~vleG~v~it~~~G~--~~~~~aGD~~ 54 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGE--TVTFKAGDAF 54 (74)
T ss_dssp EEEEEEEEEEEEEEETTTE--EEEEETTEEE
T ss_pred CEEEEEEEeEEEEEECCCC--EEEEcCCcEE
Confidence 7889999999999987885 4899999987
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=69.26 E-value=18 Score=32.87 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=32.0
Q ss_pred eeEEe-CCCCEE-EccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008660 429 KPVFF-SERTTI-ISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 477 (558)
Q Consensus 429 ~~~~y-~~ge~I-~~~G~~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~f 477 (558)
+...+ .||+.- +...+ .++++++++|.+.+.. .+|......+++|++|
T Consensus 30 ~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 80 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIF 80 (159)
T ss_pred EEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEE
Confidence 33344 454433 44433 7899999999999744 3344456799999987
No 55
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=67.99 E-value=59 Score=29.59 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHhhhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008660 157 FFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYA 213 (558)
Q Consensus 157 ~~~l~rl~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~ 213 (558)
++++.|++|++|..+.++..........+.. ...+..+..+++..+..+|..+.-.
T Consensus 67 ~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~a~~~~~lf~~~ 122 (200)
T PF00520_consen 67 LLRLLRLLRLLRRFRSLRRLLRALIRSFPDL-FKFILLLFIVLLFFACIGYQLFGGS 122 (200)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eeccccccccccccccccccccccccccccc-cccccccccccccccchhheecccc
Confidence 3445555555555554333322111111111 1334444444445555555555544
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=67.70 E-value=11 Score=31.82 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhh----------cCCCHHHHHhcCCHHHHHHHHHH
Q 008660 358 DISTFVRAKIREAKRENLLLK----------HDIHIDSLVSDLPDDTAKQVKLH 401 (558)
Q Consensus 358 ~lp~~L~~rv~~y~~~~~~~~----------~~~~~~~~l~~Lp~~Lr~~i~~~ 401 (558)
-+|+++|..|...+...-... ...+...++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 689999999999887643321 22456789999999999998764
No 57
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=67.01 E-value=38 Score=29.43 Aligned_cols=69 Identities=9% Similarity=0.070 Sum_probs=43.6
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEE-EcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEec
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIY-SKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 506 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~-~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 506 (558)
+....+.||..+-.--....++++|++|++++. ..+++ ...+++|+.+-- ... ....+++.+
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~--~~~L~aGD~i~~-------~~~--------~~H~~~N~e 99 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE--VHPIRPGTMYAL-------DKH--------DRHYLRAGE 99 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE--EEEeCCCeEEEE-------CCC--------CcEEEEcCC
Confidence 344567888755332222247999999999987 43342 479999998741 222 334455557
Q ss_pred eEEEEEE
Q 008660 507 NVEGFTL 513 (558)
Q Consensus 507 ~~~l~~L 513 (558)
+++++++
T Consensus 100 ~~~~l~v 106 (125)
T PRK13290 100 DMRLVCV 106 (125)
T ss_pred CEEEEEE
Confidence 7777765
No 58
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=53.24 E-value=30 Score=22.64 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 008660 346 KLRQIKHWKHFKDIS-----TFVRAKIREAK 371 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp-----~~L~~rv~~y~ 371 (558)
+..+++++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356899999999998 56899998874
No 59
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=50.91 E-value=48 Score=28.75 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=36.4
Q ss_pred hcCeeEEeCCCCEE-EccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 426 GCLKPVFFSERTTI-ISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 426 ~~l~~~~y~~ge~I-~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
...+...+.||+-+ .+--...++.|+|++|...+.-+++ ...+++|+.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~---~~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE---EVEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE---EEEecCCCEE
Confidence 45667778888885 4444447899999999999876554 3578888775
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=50.25 E-value=27 Score=30.66 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 008660 281 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFK 357 (558)
Q Consensus 281 ~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~ 357 (558)
.......++++.+.+++. +-++..|.+...+++.+++.+++.++.++--|++++...... .+...+.+++..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HTSS-SSHHHHHTHS
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cCCCCCCHHHHHHCC
Confidence 345566788888888776 555789999999999999999999999999999997654322 222345555555554
No 61
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.46 E-value=1.2e+02 Score=37.89 Aligned_cols=237 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhhhc
Q 008660 27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQL 106 (558)
Q Consensus 27 d~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~ 106 (558)
..+++.+++++..-.+. ..............+...|++.-.+|.+.+++.--
T Consensus 843 ~~~I~~~illSs~ala~---------ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~i------------------- 894 (1592)
T KOG2301|consen 843 EAFILTVILISSLALAF---------EDVRGENRPTINGILEYADYIFTYIFTFEMLLKWI------------------- 894 (1592)
T ss_pred HHHHHHHHHHhhhcccc---------cCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred cccccCCceecChhHHhhhhhhhhhhhhccccceeeeeeccCCCCcchhhHHHHHHHHhHHHhhhhhHhhHhhhhhhhhh
Q 008660 107 KNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADA 186 (558)
Q Consensus 107 ~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~r~~~l~~~~~~~~~~~~~~ 186 (558)
..|-.. --+..|.++|++-+.---.-..+ .......++.+|.+|.+|-+|.+++...... .-.
T Consensus 895 ----a~Gf~~----y~rn~w~~lDf~Vv~vslisl~~-------~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~--Vv~ 957 (1592)
T KOG2301|consen 895 ----AYGFFF----YFRNAWNWLDFVVVIVSLISLIA-------SLKILSLIKSLRILRALRPLRALSRFPGMRV--VVL 957 (1592)
T ss_pred ----HhHHHH----HHhhHHhhhhHHHhhhHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHccccch--hHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCC-------------ccccccccccCC
Q 008660 187 TWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKC-------------FGDYKLLNDSCP 253 (558)
Q Consensus 187 ~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~sW~~~~~~ 253 (558)
...+.+..++-.++++|.+=+++-.+|++-..-- +..|.++ ..+..|.. .+.
T Consensus 958 ~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gk--------------f~~C~d~~~~~~~~~~~~y~~~~~~~~~-~~~ 1022 (1592)
T KOG2301|consen 958 ALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGK--------------FYACNDPTVGSRLTRTEVYNKYECESLP-RAP 1022 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------ceeccCCCcchhhhhhhhhccCchhhhh-hcc
Q ss_pred CCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHH
Q 008660 254 ISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLF 326 (558)
Q Consensus 254 ~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~f 326 (558)
..--.+..++|+-...+... +-..+.++-+..-+|=++-. +.++-|.+.+.+....+|-++..++|.++.
T Consensus 1023 ~~~w~n~~~nfDnv~~a~la--Lf~v~tf~GW~~i~~~~ids-~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1023 RRWWNNRKFNFDNVGNAMLA--LFQVATFKGWPDIMYAAIDS-RGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred ceEEeccccccccHHHHHHH--HHHHHhcCCHHHHHHHHhhh-hccCcCCcccccccceeehhhhhhHHhhhh
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=47.62 E-value=41 Score=31.05 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.1
Q ss_pred EEe-CCCC-EEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008660 431 VFF-SERT-TIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y-~~ge-~I~~~G~~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~f 477 (558)
.++ .||+ .-+.. +..++++++++|.+.+.. ++|......+++|++|
T Consensus 38 mvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 86 (177)
T PRK13264 38 MVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMF 86 (177)
T ss_pred EEEccCCccccccc-CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEE
Confidence 344 5553 33333 457899999999998654 3443346789999987
No 63
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.82 E-value=1.1e+02 Score=35.04 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHHHHHHhc--C---CcCCCCCCHHHHHHHHhcCee
Q 008660 388 SDLPDDTAKQVKLHFGRNLLG--Q---MQKFENWEDYSLDHLCGCLKP 430 (558)
Q Consensus 388 ~~Lp~~Lr~~i~~~l~~~~l~--~---i~~F~~~~~~~l~~L~~~l~~ 430 (558)
++||+.||+.+..+...++.. . -.+++++|++..++|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 469999999999988777765 2 357889999998888888743
No 64
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=44.49 E-value=76 Score=23.39 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHH
Q 008660 317 WMTIYGVVLFVFLIGRMQSET--TRA--HKINQKLRQIKHWKH 355 (558)
Q Consensus 317 ~~mi~G~~~fa~iig~i~s~~--~~~--~~~~~~~~~i~~~m~ 355 (558)
...+++.+.|+.+|-.+-..+ ++. +++++|++.+-+-+.
T Consensus 14 ~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 14 ILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 555556666666666655221 222 257788887766554
No 65
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=43.67 E-value=3.8e+02 Score=29.63 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=34.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhc--C---CcCCCCCCHHHHHHHHhcCeeEEeCCC
Q 008660 387 VSDLPDDTAKQVKLHFGRNLLG--Q---MQKFENWEDYSLDHLCGCLKPVFFSER 436 (558)
Q Consensus 387 l~~Lp~~Lr~~i~~~l~~~~l~--~---i~~F~~~~~~~l~~L~~~l~~~~y~~g 436 (558)
|.+.|..|-+.++.++-..+-. . -..+.-||.+....+|-++....|...
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEH 553 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEH 553 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccC
Confidence 4578999999988877554322 1 234556788888888888888777643
No 66
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=42.90 E-value=61 Score=27.31 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhh---------cCC---C-HHHHHhcCCHHHHHHHHHHHHHHH
Q 008660 358 DISTFVRAKIREAKRENLLLK---------HDI---H-IDSLVSDLPDDTAKQVKLHFGRNL 406 (558)
Q Consensus 358 ~lp~~L~~rv~~y~~~~~~~~---------~~~---~-~~~~l~~Lp~~Lr~~i~~~l~~~~ 406 (558)
-||.+++.+|..-+...-... .+- + ..++|..||+.+|.||..+.....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 589999999865443321100 000 1 358999999999999987765543
No 67
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=39.56 E-value=79 Score=27.43 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCH
Q 008660 346 KLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPD 392 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~ 392 (558)
+..+++.|-.++-+=+-||..--+++-..|++++. .|.+++++.|.
T Consensus 61 rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~e-eEaeiMKdVPg 106 (146)
T KOG3300|consen 61 RRLKIEDYAARNAILPILQAERDRRFLSELRKNLE-EEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH-HHHHHHccCCC
Confidence 34556666666666666766665555555554332 35677777773
No 68
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=36.13 E-value=80 Score=27.29 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=38.4
Q ss_pred CeeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008660 428 LKPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 479 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~-~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe 479 (558)
+....+.||..+-.--.+ .+...+|++|++.+..+ +. ...+.+|+++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~--~~~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GE--KKELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CC--ceEecCCCEEEE
Confidence 445668899888777766 67899999999998776 42 468999999854
No 69
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.02 E-value=7.3e+02 Score=28.56 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=44.6
Q ss_pred cccccCCCCCCChh------hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 008660 297 SAFGQDLETSDDVG------ENIFAIWMTIYGVVLFVFLIGRMQSE----TTRA-HKINQKLRQIKHWKHFKDISTFVRA 365 (558)
Q Consensus 297 ttvGyGdi~p~t~~------E~~~~i~~mi~G~~~fa~iig~i~s~----~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 365 (558)
.|+|+||....... -.+|.+++.++...+.-.+|+-|+.. .... .+.+.+ ....--|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q-~A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQ-WAATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHH-HHHHHHHHHhcCCHHHHH
Confidence 68999998764332 35566666677777778888888832 2222 222222 223334668899999988
Q ss_pred HHHH
Q 008660 366 KIRE 369 (558)
Q Consensus 366 rv~~ 369 (558)
|-+.
T Consensus 680 ~~~~ 683 (782)
T KOG3676|consen 680 RFRL 683 (782)
T ss_pred HHhh
Confidence 8443
No 70
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=31.18 E-value=1.4e+02 Score=25.56 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=31.0
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 433 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 433 y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..||..=..-++ ++..-|++|.+++..++|+ ...+++||.|
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge--~v~~~aGD~~ 92 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTPDGGE--PVEVRAGDSF 92 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEECCCCe--EEEEcCCCEE
Confidence 445555444444 6888899999999888884 6799999987
No 71
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=31.16 E-value=1.2e+02 Score=27.07 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Q 008660 315 AIWMTIYGVVLFVFLIGRMQSE-----------------TTRAHKINQKLRQIKHWKH 355 (558)
Q Consensus 315 ~i~~mi~G~~~fa~iig~i~s~-----------------~~~~~~~~~~~~~i~~~m~ 355 (558)
.+++.++|..++|++++.+.+. .-..++|+++++...+.++
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 3678899999999999876521 1134578888888876655
No 72
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=31.01 E-value=1.4e+02 Score=26.33 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred cCeeEEeCCCCEEEccCC-ccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeee
Q 008660 427 CLKPVFFSERTTIISEGE-SIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCG 478 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~-~~~~myfI~~G~v~v~~--~~-~~~~~~~l~~G~~fG 478 (558)
.+....+.||...-..-. ..+++++|++|+..+.. ++ +......+++|+.+=
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 455566788887654432 25789999999999654 21 233456899999863
No 73
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=30.69 E-value=65 Score=23.76 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=18.9
Q ss_pred hCCCCHHHHHHHHHHHHHHhhh
Q 008660 356 FKDISTFVRAKIREAKRENLLL 377 (558)
Q Consensus 356 ~~~lp~~L~~rv~~y~~~~~~~ 377 (558)
..++|.+|.+.|.+|.+|..+.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 4589999999999999998764
No 74
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=29.51 E-value=81 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 008660 347 LRQIKHWKHFKDIS-----TFVRAKIREAK 371 (558)
Q Consensus 347 ~~~i~~~m~~~~lp-----~~L~~rv~~y~ 371 (558)
..++++.++.+++| .+|++|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 45788889988888 45888887763
No 75
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=27.97 E-value=94 Score=28.07 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=33.7
Q ss_pred eeEEeCCCC--EEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 429 KPVFFSERT--TIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 429 ~~~~y~~ge--~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
.....+||- .....-...+++.+|++|+..+..++++ ..+++|+.-|
T Consensus 45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e---~~lrpGD~~g 93 (161)
T COG3837 45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGE---TRLRPGDSAG 93 (161)
T ss_pred ceEEeCCCCccccccccccCceEEEEEcCceEEEECCee---EEecCCceee
Confidence 344566654 3333445678999999999997776664 5899999987
No 76
>PRK11171 hypothetical protein; Provisional
Probab=27.44 E-value=1.7e+02 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=38.2
Q ss_pred cCeeEEeCCCCEEEcc-CCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 427 CLKPVFFSERTTIISE-GESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~-G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
.|....+.||..+-.. .....+.++|++|+.++..++. ...+.+||+.
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~---~~~l~~GD~i 233 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND---WVEVEAGDFI 233 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 5666789999998874 5666799999999999876443 5689999986
No 77
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=27.05 E-value=2.3e+02 Score=22.66 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=42.2
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEec
Q 008660 427 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 506 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 506 (558)
......+.||..+=.-...+.+..||++|.... .++ .+.+|++.=+ ... +..+..+.+
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~~~-----~~~~G~~~~~-------p~g--------~~h~~~s~~ 82 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD--GDG-----RYGAGDWLRL-------PPG--------SSHTPRSDE 82 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--TTC-----EEETTEEEEE--------TT--------EEEEEEESS
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--CCc-----cCCCCeEEEe-------CCC--------CccccCcCC
Confidence 345566888888877666777888999999863 222 4577777532 111 566788888
Q ss_pred eEEEEE
Q 008660 507 NVEGFT 512 (558)
Q Consensus 507 ~~~l~~ 512 (558)
.|.++.
T Consensus 83 gc~~~v 88 (91)
T PF12973_consen 83 GCLILV 88 (91)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 898875
No 78
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=26.40 E-value=2.2e+02 Score=27.23 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=36.9
Q ss_pred ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEE--EeceEEEEEEcH
Q 008660 441 SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTII--AHTNVEGFTLKT 515 (558)
Q Consensus 441 ~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~--A~~~~~l~~L~~ 515 (558)
+.++..+...||++|++.+...++ ...+.+|++- + +.+. +..+++ +.++++...+.|
T Consensus 78 e~d~~ae~~lfVv~Ge~tv~~~G~---th~l~eggya----y---lPpg--------s~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 78 EGDEGAETFLFVVSGEITVKAEGK---THALREGGYA----Y---LPPG--------SGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred CCCCcceEEEEEEeeeEEEEEcCe---EEEeccCCeE----E---eCCC--------CcceEeeccCCceEEEEEee
Confidence 344567789999999999876443 4688888763 2 2222 344455 667777766654
No 79
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=26.25 E-value=4.4e+02 Score=24.72 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhcCCcCCC-CCCHHHHHHHHhcCeeEE--eCCCCEEEccCCccc
Q 008660 388 SDLPDDTAKQVKLHFGRNLLGQMQKFE-NWEDYSLDHLCGCLKPVF--FSERTTIISEGESIH 447 (558)
Q Consensus 388 ~~Lp~~Lr~~i~~~l~~~~l~~i~~F~-~~~~~~l~~L~~~l~~~~--y~~ge~I~~~G~~~~ 447 (558)
..+|+. ..++...+....+.-.-.|. ..++....+......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 346666 34444455444443222332 356678888899999999 999999999999754
No 80
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=25.76 E-value=3.2e+02 Score=22.21 Aligned_cols=59 Identities=5% Similarity=-0.070 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhcCCC--HHHHHhcCCHHHHHHHHHHHHH
Q 008660 346 KLRQIKHWKHFK-DISTFVRAKIREAKRENLLLKHDIH--IDSLVSDLPDDTAKQVKLHFGR 404 (558)
Q Consensus 346 ~~~~i~~~m~~~-~lp~~L~~rv~~y~~~~~~~~~~~~--~~~~l~~Lp~~Lr~~i~~~l~~ 404 (558)
..+.++++|... +++++-+.++++.++..-....... -..+-..+++..|..+...+..
T Consensus 20 E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 20 ERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888884 9999999999998876544322221 2334445678888887766654
No 81
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=25.66 E-value=1.3e+02 Score=24.23 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=19.2
Q ss_pred eEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 448 EMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 448 ~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
-.++|.+|.|++.-.+.. ..+.+|+.|
T Consensus 35 ~vF~V~~G~v~Vti~~~~---f~v~~G~~F 61 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHETS---FVVTKGGSF 61 (85)
T ss_dssp EEEEEEESEEEEEETTEE---EEEETT-EE
T ss_pred EEEEEEeCEEEEEEcCcE---EEEeCCCEE
Confidence 378899999998765432 467788776
No 82
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.55 E-value=92 Score=20.65 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCCHH
Q 008660 348 RQIKHWKHFKDISTF 362 (558)
Q Consensus 348 ~~i~~~m~~~~lp~~ 362 (558)
+++++|++.+++|.+
T Consensus 7 ~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHcCCCCC
Confidence 578999999998754
No 83
>PHA01757 hypothetical protein
Probab=25.55 E-value=3.3e+02 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=22.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 308 DVGENIFAIWMTIYGVVLFVFLIGRMQSE 336 (558)
Q Consensus 308 t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 336 (558)
+..|...--|....|.+.-+|++|.+.-+
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hl 32 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHL 32 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677788888888999998844
No 84
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.73 E-value=3.9e+02 Score=21.82 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=24.0
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008660 327 VFLIGRMQ-------SETTRAHKINQKLRQIKHWKHFKDIS 360 (558)
Q Consensus 327 a~iig~i~-------s~~~~~~~~~~~~~~i~~~m~~~~lp 360 (558)
+|..++++ ..-...+|.++.+++.++.++++++.
T Consensus 50 ~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 50 CYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45555555 22345567788899999999999874
No 85
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=24.28 E-value=1.9e+02 Score=31.89 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=35.1
Q ss_pred HHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 287 RCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 334 (558)
Q Consensus 287 ~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 334 (558)
.|++|++....--|- ||.|.+..-++..-++-++..++-+---+|++
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLA 644 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLA 644 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHH
Confidence 489999998888887 99999999998877766666555444444444
No 86
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=24.00 E-value=5.4e+02 Score=23.75 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=35.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHhCCCCHH
Q 008660 305 TSDDVGENIFAIWMTIYGVVLFVFLIGRMQ-----SETTR--AHKINQKLRQIKHWKHFKDISTF 362 (558)
Q Consensus 305 ~p~t~~E~~~~i~~mi~G~~~fa~iig~i~-----s~~~~--~~~~~~~~~~i~~~m~~~~lp~~ 362 (558)
.+.--.+-+++..++.+++...||++|-.- .+..+ ..++..|-.+.-+-++++++++.
T Consensus 69 ~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDps 133 (173)
T PF08566_consen 69 QQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDPS 133 (173)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 333345778888999999999999998654 22222 22344444444455566666553
No 87
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.90 E-value=2.2e+02 Score=20.43 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-hcCCC------HHHHHhcCCHHHHHHH
Q 008660 357 KDISTFVRAKIREAKRENLLL-KHDIH------IDSLVSDLPDDTAKQV 398 (558)
Q Consensus 357 ~~lp~~L~~rv~~y~~~~~~~-~~~~~------~~~~l~~Lp~~Lr~~i 398 (558)
+++|...-+|.-.|+++.-.- ..|.+ -.+.+.--|.+.|.|+
T Consensus 1 k~Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 1 KKIPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 479999999999999987653 33443 2355666677777765
No 88
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=22.84 E-value=3.4e+02 Score=25.45 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=32.3
Q ss_pred CeeEEeCCCCEE---------EccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTI---------ISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I---------~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~f 477 (558)
+-...+.||.+. +.+.....++|++++|+..+.. .+|......+.+|+.+
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v 130 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV 130 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence 344567788753 3333334599999999988543 3333345688999886
No 89
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=22.45 E-value=7.8e+02 Score=26.03 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008660 311 ENIFAIWMTIYGVVLFVFLIGRM 333 (558)
Q Consensus 311 E~~~~i~~mi~G~~~fa~iig~i 333 (558)
..+++.+..+.-.++..+++-|+
T Consensus 391 ~~~lg~l~~~~~~~~~~~illNl 413 (425)
T PF08016_consen 391 NPVLGPLFFFSFMFLVFFILLNL 413 (425)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444444444444333
No 90
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=22.13 E-value=1.2e+02 Score=23.86 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCee
Q 008660 383 IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKP 430 (558)
Q Consensus 383 ~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~ 430 (558)
-.+++..||+.+|.++...+ .-+...+++.++.+-..++.
T Consensus 29 AA~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 29 AAEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 35789999999998887655 34677888888888766554
No 91
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=21.79 E-value=1.9e+02 Score=20.92 Aligned_cols=37 Identities=5% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhhhhcCCCHHHHHh
Q 008660 347 LRQIKHWKHFKDIS-------TFVRAKIREAKRENLLLKHDIHIDSLVS 388 (558)
Q Consensus 347 ~~~i~~~m~~~~lp-------~~L~~rv~~y~~~~~~~~~~~~~~~~l~ 388 (558)
+..+.+|.+..+++ ++|-..|+++|.- ..++|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~s-----~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFNS-----QPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHTT---------HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc-----CCCCHHHHHH
Confidence 45678888888777 4566677777642 3467776653
No 92
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=21.08 E-value=3.5e+02 Score=19.95 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 313 IFAIWMTIYGVVLFVFLIGRMQSETTRAHKIN 344 (558)
Q Consensus 313 ~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~ 344 (558)
.|+.+.|++..+++-.+++-++++..+.-+++
T Consensus 17 YFtLi~M~lti~~~~Iv~si~~AILNKLcd~n 48 (64)
T PF03579_consen 17 YFTLIFMMLTIGFFFIVTSIMAAILNKLCDLN 48 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777777777777766554443
No 93
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=20.57 E-value=87 Score=23.79 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=20.0
Q ss_pred hCCCCHHHHHHHHHHHHHHhhhh
Q 008660 356 FKDISTFVRAKIREAKRENLLLK 378 (558)
Q Consensus 356 ~~~lp~~L~~rv~~y~~~~~~~~ 378 (558)
-+++|+++++.|.+|.+|...+.
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999988764
No 94
>PRK11171 hypothetical protein; Provisional
Probab=20.56 E-value=2.3e+02 Score=28.09 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.5
Q ss_pred CeeEEeCCCCEEEccCC--ccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISEGE--SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~--~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||...-.... ..+++++|++|++++...+. ...+.+|+.+
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~---~~~L~~GDsi 111 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK---THALSEGGYA 111 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE---EEEECCCCEE
Confidence 34456788875443332 24689999999999876443 4689999886
No 95
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=20.29 E-value=4.8e+02 Score=21.26 Aligned_cols=74 Identities=20% Similarity=0.109 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCH-HHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHH
Q 008660 346 KLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPD-DTAKQVKLHFGRNLLGQMQKFENWEDYSLDHL 424 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~-~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L 424 (558)
....+.+.+...+++.+.+..+..-+. +..+.+++...++. ..+.++ |.-.+--+..+.....+++.++
T Consensus 20 E~~~I~~~~~~~~~~~~~~~~~~~~l~------~p~~~~~la~~~~~~~~a~~~----y~~s~~~~d~~s~aE~~~L~~l 89 (95)
T cd07178 20 ERARILGELGEAGLDAEERAFLEAELA------APLDPDALAAAVPDPELAAEV----YAASLLAIDPDTFAERAYLDEL 89 (95)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH------CCCCHHHHHHHcCCHHHHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence 356788899999999877766665544 46677788888887 444444 3333333344444556788888
Q ss_pred HhcCe
Q 008660 425 CGCLK 429 (558)
Q Consensus 425 ~~~l~ 429 (558)
+..+.
T Consensus 90 a~aLg 94 (95)
T cd07178 90 AAALG 94 (95)
T ss_pred HHHhC
Confidence 87653
Done!