Query 008660
Match_columns 558
No_of_seqs 315 out of 2551
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 9.1E-36 3.1E-40 308.7 12.2 181 282-530 159-339 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1.5E-31 5.3E-36 253.5 22.9 184 335-530 2-185 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 4.2E-31 1.5E-35 251.3 23.0 183 335-530 3-185 (202)
4 3ukn_A Novel protein similar t 100.0 1.2E-31 4.3E-36 256.9 16.2 185 335-530 6-190 (212)
5 1orq_C Potassium channel; volt 99.9 6.5E-22 2.2E-26 191.0 13.9 210 25-338 9-219 (223)
6 4f8a_A Potassium voltage-gated 99.8 1.4E-19 4.8E-24 164.3 15.6 138 383-530 5-142 (160)
7 2r9r_B Paddle chimera voltage 99.8 9E-19 3.1E-23 188.3 14.2 230 17-338 174-429 (514)
8 3ocp_A PRKG1 protein; serine/t 99.8 6E-18 2.1E-22 150.0 12.8 131 389-531 7-137 (139)
9 3gyd_A CNMP-BD protein, cyclic 99.7 1.3E-15 4.4E-20 142.4 18.4 124 397-530 31-157 (187)
10 3idb_B CAMP-dependent protein 99.7 3.5E-16 1.2E-20 142.3 13.9 125 397-531 30-156 (161)
11 2pqq_A Putative transcriptiona 99.7 1.4E-15 4.8E-20 135.7 16.6 117 404-530 4-123 (149)
12 3mdp_A Cyclic nucleotide-bindi 99.7 6.9E-16 2.4E-20 136.7 13.1 117 404-530 5-127 (142)
13 1wgp_A Probable cyclic nucleot 99.7 1.2E-16 4.2E-21 141.0 7.5 126 405-531 6-135 (137)
14 3shr_A CGMP-dependent protein 99.6 1.3E-15 4.5E-20 153.0 15.0 134 385-530 19-152 (299)
15 3pna_A CAMP-dependent protein 99.6 1.8E-15 6.1E-20 136.6 14.2 118 401-530 34-151 (154)
16 1vp6_A CNBD, cyclic-nucleotide 99.6 3.5E-15 1.2E-19 131.6 14.8 113 404-530 10-122 (138)
17 3vou_A ION transport 2 domain 99.6 5.2E-15 1.8E-19 132.7 14.6 82 285-366 53-148 (148)
18 2z69_A DNR protein; beta barre 99.6 7.4E-15 2.5E-19 131.9 15.3 118 404-530 11-131 (154)
19 4ev0_A Transcription regulator 99.6 2.8E-14 9.7E-19 135.8 18.9 114 407-530 1-117 (216)
20 2a9h_A Voltage-gated potassium 99.6 1.4E-15 4.9E-20 136.7 9.0 56 283-338 83-138 (155)
21 3dn7_A Cyclic nucleotide bindi 99.6 1.3E-14 4.5E-19 135.9 16.0 117 404-530 6-126 (194)
22 2d93_A RAP guanine nucleotide 99.6 4.7E-16 1.6E-20 136.9 4.5 126 392-529 3-130 (134)
23 3fx3_A Cyclic nucleotide-bindi 99.6 4.2E-14 1.4E-18 136.8 17.0 119 402-530 8-129 (237)
24 3of1_A CAMP-dependent protein 99.6 2.6E-14 9E-19 138.7 15.3 118 402-530 122-239 (246)
25 3d0s_A Transcriptional regulat 99.6 3.4E-14 1.2E-18 136.5 15.1 117 404-530 5-124 (227)
26 2ih3_C Voltage-gated potassium 99.6 2.6E-14 8.8E-19 123.6 12.4 59 283-341 60-118 (122)
27 3e97_A Transcriptional regulat 99.6 3.7E-14 1.3E-18 136.7 14.4 117 404-530 5-124 (231)
28 4ava_A Lysine acetyltransferas 99.5 4.3E-14 1.5E-18 144.2 15.4 116 404-530 12-129 (333)
29 1zyb_A Transcription regulator 99.5 7.9E-14 2.7E-18 134.7 16.2 118 404-530 17-139 (232)
30 3dv8_A Transcriptional regulat 99.5 1.6E-13 5.5E-18 130.9 17.3 116 405-530 3-123 (220)
31 3iwz_A CAP-like, catabolite ac 99.5 2.2E-13 7.5E-18 130.9 18.3 118 404-530 10-135 (230)
32 3of1_A CAMP-dependent protein 99.5 4.5E-14 1.5E-18 137.1 12.9 115 404-530 6-120 (246)
33 3shr_A CGMP-dependent protein 99.5 7.2E-14 2.5E-18 140.2 14.4 120 401-530 153-276 (299)
34 4h33_A LMO2059 protein; bilaye 99.5 1.4E-14 4.9E-19 127.8 7.6 88 285-372 44-135 (137)
35 2qcs_B CAMP-dependent protein 99.5 2.1E-13 7.2E-18 136.1 16.8 120 402-531 154-277 (291)
36 2gau_A Transcriptional regulat 99.5 2.2E-13 7.5E-18 131.3 15.7 113 408-530 13-128 (232)
37 3dkw_A DNR protein; CRP-FNR, H 99.5 7.1E-14 2.4E-18 134.1 11.9 118 404-530 8-128 (227)
38 2qcs_B CAMP-dependent protein 99.5 1E-13 3.5E-18 138.4 12.9 119 400-530 34-152 (291)
39 3tnp_B CAMP-dependent protein 99.5 1.8E-13 6.2E-18 144.0 14.5 124 397-530 137-262 (416)
40 1o7f_A CAMP-dependent RAP1 gua 99.5 3.7E-13 1.3E-17 143.9 15.5 130 390-530 27-161 (469)
41 3ryp_A Catabolite gene activat 99.5 1.3E-12 4.4E-17 123.7 17.0 111 411-530 2-115 (210)
42 4din_B CAMP-dependent protein 99.5 1.9E-13 6.4E-18 142.3 11.4 119 400-530 125-243 (381)
43 2oz6_A Virulence factor regula 99.4 2.3E-12 7.8E-17 121.7 17.0 109 416-530 1-112 (207)
44 3eff_K Voltage-gated potassium 99.4 1.3E-12 4.3E-17 115.9 13.9 53 284-336 40-92 (139)
45 2fmy_A COOA, carbon monoxide o 99.4 4.8E-13 1.6E-17 127.9 11.6 109 405-530 4-114 (220)
46 4din_B CAMP-dependent protein 99.4 3.2E-13 1.1E-17 140.6 10.2 120 401-530 244-367 (381)
47 1o7f_A CAMP-dependent RAP1 gua 99.4 1.1E-12 3.7E-17 140.3 14.1 118 402-530 334-453 (469)
48 4f7z_A RAP guanine nucleotide 99.4 1.3E-12 4.5E-17 152.4 15.5 133 385-529 23-160 (999)
49 1ft9_A Carbon monoxide oxidati 99.4 1.2E-12 4.1E-17 125.3 11.9 108 406-530 1-110 (222)
50 3kcc_A Catabolite gene activat 99.4 5.5E-12 1.9E-16 124.0 16.7 108 414-530 55-165 (260)
51 3tnp_B CAMP-dependent protein 99.4 1.7E-12 5.7E-17 136.7 13.5 119 403-531 265-392 (416)
52 1o5l_A Transcriptional regulat 99.4 3.3E-12 1.1E-16 121.5 13.0 112 410-530 4-118 (213)
53 3cf6_E RAP guanine nucleotide 99.3 3.9E-12 1.3E-16 141.7 13.3 135 384-530 12-148 (694)
54 3e6c_C CPRK, cyclic nucleotide 99.3 1E-11 3.4E-16 121.2 12.8 111 407-530 11-124 (250)
55 2q67_A Potassium channel prote 99.3 1.7E-11 5.7E-16 104.4 11.9 55 285-339 50-104 (114)
56 2k1e_A Water soluble analogue 99.3 1.8E-12 6.3E-17 108.5 4.2 55 284-338 40-94 (103)
57 3la7_A Global nitrogen regulat 99.2 1.2E-10 4E-15 113.1 15.6 105 418-530 30-140 (243)
58 4f7z_A RAP guanine nucleotide 99.2 5.6E-11 1.9E-15 138.6 15.5 115 402-527 334-450 (999)
59 3ouf_A Potassium channel prote 99.2 1.3E-10 4.4E-15 95.9 12.0 54 285-338 33-86 (97)
60 2bgc_A PRFA; bacterial infecti 99.2 2.7E-10 9.1E-15 110.2 16.1 107 414-530 2-115 (238)
61 3ldc_A Calcium-gated potassium 99.1 1.5E-10 5.2E-15 92.3 7.5 52 285-336 29-80 (82)
62 3rvy_A ION transport protein; 99.0 8.4E-10 2.9E-14 109.9 10.8 56 282-337 178-239 (285)
63 3pjs_K KCSA, voltage-gated pot 99.0 6.9E-11 2.4E-15 107.8 2.3 52 284-335 67-118 (166)
64 3b02_A Transcriptional regulat 99.0 3.5E-09 1.2E-13 98.9 12.7 78 431-519 2-82 (195)
65 1xl4_A Inward rectifier potass 98.9 4E-09 1.4E-13 105.0 10.0 55 284-338 82-136 (301)
66 1p7b_A Integral membrane chann 98.9 2.8E-09 9.5E-14 107.3 7.6 55 284-338 96-150 (333)
67 3um7_A Potassium channel subfa 98.9 6.9E-09 2.4E-13 102.9 10.3 77 284-362 115-191 (309)
68 2zcw_A TTHA1359, transcription 98.8 1.3E-08 4.5E-13 95.4 10.9 84 424-519 1-89 (202)
69 2qks_A KIR3.1-prokaryotic KIR 98.7 2.1E-08 7E-13 100.6 7.1 55 284-338 78-132 (321)
70 4gx0_A TRKA domain protein; me 98.5 2.5E-07 8.4E-12 101.1 11.3 48 285-332 52-99 (565)
71 3ukm_A Potassium channel subfa 98.5 1.2E-07 4E-12 92.7 7.0 52 284-335 93-144 (280)
72 3sya_A G protein-activated inw 98.5 4.9E-07 1.7E-11 90.8 11.4 54 285-338 92-147 (340)
73 3ukm_A Potassium channel subfa 98.4 3.4E-07 1.1E-11 89.5 6.7 52 285-336 202-260 (280)
74 3um7_A Potassium channel subfa 98.4 2.9E-07 9.9E-12 91.3 5.8 53 285-337 225-283 (309)
75 3spc_A Inward-rectifier K+ cha 98.3 2.3E-06 7.8E-11 86.0 11.4 55 284-338 94-150 (343)
76 1lnq_A MTHK channels, potassiu 98.2 1.5E-07 5E-12 95.9 -1.0 51 286-336 47-97 (336)
77 4dxw_A Navrh, ION transport pr 97.8 0.00023 8E-09 67.8 12.9 53 25-88 13-65 (229)
78 1ors_C Potassium channel; volt 95.0 0.0095 3.2E-07 51.4 2.2 46 65-138 37-82 (132)
79 2kyh_A KVAP, voltage-gated pot 94.8 0.013 4.3E-07 51.5 2.7 45 66-138 53-97 (147)
80 3fjs_A Uncharacterized protein 76.3 14 0.00047 30.0 8.9 67 428-512 38-104 (114)
81 2ozj_A Cupin 2, conserved barr 72.4 19 0.00066 28.8 8.9 64 432-513 44-107 (114)
82 3rns_A Cupin 2 conserved barre 71.2 19 0.00065 33.3 9.5 69 427-513 38-106 (227)
83 1yhf_A Hypothetical protein SP 69.1 31 0.0011 27.4 9.4 68 428-513 42-109 (115)
84 4e2g_A Cupin 2 conserved barre 63.7 46 0.0016 26.9 9.6 78 428-523 43-124 (126)
85 2pfw_A Cupin 2, conserved barr 62.8 42 0.0014 26.6 9.1 68 428-513 36-103 (116)
86 3lwc_A Uncharacterized protein 58.7 26 0.00088 28.8 7.0 44 430-477 44-87 (119)
87 2gu9_A Tetracenomycin polyketi 54.3 27 0.00092 27.5 6.3 47 428-477 23-72 (113)
88 1v70_A Probable antibiotics sy 52.7 31 0.001 26.5 6.3 47 428-477 30-77 (105)
89 3d82_A Cupin 2, conserved barr 50.1 39 0.0013 26.0 6.5 51 447-515 51-101 (102)
90 3h8u_A Uncharacterized conserv 49.6 25 0.00086 28.6 5.5 49 427-477 40-89 (125)
91 3rns_A Cupin 2 conserved barre 48.7 69 0.0024 29.4 9.0 69 427-513 154-223 (227)
92 1yfu_A 3-hydroxyanthranilate-3 47.6 23 0.0008 31.3 5.0 33 445-477 54-87 (174)
93 3es4_A Uncharacterized protein 47.5 18 0.00061 29.8 4.0 43 433-478 49-91 (116)
94 3bcw_A Uncharacterized protein 47.3 16 0.00056 30.3 3.9 43 433-478 56-98 (123)
95 2fqp_A Hypothetical protein BP 44.4 18 0.00063 28.1 3.6 49 429-478 21-70 (97)
96 3kg2_A Glutamate receptor 2; I 43.8 29 0.001 38.5 6.5 54 284-338 563-616 (823)
97 1o5u_A Novel thermotoga mariti 42.2 1.2E+02 0.0042 23.7 10.2 46 428-477 33-78 (101)
98 3d0j_A Uncharacterized protein 41.0 62 0.0021 27.5 6.4 59 443-516 47-110 (140)
99 1zvf_A 3-hydroxyanthranilate 3 39.8 25 0.00084 31.2 3.9 58 420-477 13-90 (176)
100 2pyt_A Ethanolamine utilizatio 39.6 1.1E+02 0.0036 25.5 7.9 43 431-478 62-104 (133)
101 4b29_A Dimethylsulfoniopropion 39.5 40 0.0014 31.0 5.4 32 444-477 150-181 (217)
102 3ibm_A Cupin 2, conserved barr 38.0 48 0.0016 28.9 5.7 47 428-477 58-104 (167)
103 2i45_A Hypothetical protein; n 37.7 44 0.0015 26.2 5.0 69 433-518 35-103 (107)
104 1dgw_A Canavalin; duplicated s 37.6 52 0.0018 29.0 5.9 50 427-477 42-93 (178)
105 1sfn_A Conserved hypothetical 37.1 1.6E+02 0.0055 27.2 9.6 65 430-514 54-118 (246)
106 3es1_A Cupin 2, conserved barr 36.6 33 0.0011 30.4 4.3 49 427-477 80-128 (172)
107 2q30_A Uncharacterized protein 36.4 1.4E+02 0.0047 23.0 7.9 68 429-513 36-105 (110)
108 1o4t_A Putative oxalate decarb 36.2 56 0.0019 27.0 5.6 46 429-477 60-106 (133)
109 2vpv_A Protein MIF2, MIF2P; nu 34.2 41 0.0014 29.6 4.5 45 431-478 93-139 (166)
110 4i4a_A Similar to unknown prot 34.0 63 0.0022 26.1 5.6 81 429-527 37-121 (128)
111 2opk_A Hypothetical protein; p 33.9 42 0.0014 26.9 4.3 33 444-477 51-83 (112)
112 2f4p_A Hypothetical protein TM 33.7 78 0.0027 26.7 6.2 47 429-477 51-97 (147)
113 3i7d_A Sugar phosphate isomera 32.8 41 0.0014 29.1 4.3 47 428-477 45-93 (163)
114 3kgz_A Cupin 2 conserved barre 32.6 46 0.0016 28.7 4.5 44 431-477 49-92 (156)
115 1sfn_A Conserved hypothetical 31.7 64 0.0022 30.0 5.8 50 426-478 165-215 (246)
116 1vj2_A Novel manganese-contain 31.6 50 0.0017 27.0 4.5 44 431-477 53-96 (126)
117 2qnk_A 3-hydroxyanthranilate 3 31.4 84 0.0029 30.0 6.3 58 444-516 49-107 (286)
118 3jzv_A Uncharacterized protein 31.4 43 0.0015 29.2 4.2 45 430-477 57-101 (166)
119 4axo_A EUTQ, ethanolamine util 31.2 2E+02 0.0068 24.6 8.3 30 445-477 83-112 (151)
120 1y9q_A Transcriptional regulat 30.9 94 0.0032 27.3 6.6 44 431-477 109-154 (192)
121 2bnm_A Epoxidase; oxidoreducta 30.9 1.3E+02 0.0043 26.5 7.5 47 431-477 122-172 (198)
122 4e2q_A Ureidoglycine aminohydr 30.0 1E+02 0.0035 29.2 6.8 70 429-515 73-142 (266)
123 3h7j_A Bacilysin biosynthesis 28.9 86 0.0029 29.0 6.1 47 427-476 35-81 (243)
124 3cew_A Uncharacterized cupin p 28.5 75 0.0026 25.6 5.1 46 429-477 29-76 (125)
125 3bu7_A Gentisate 1,2-dioxygena 28.4 45 0.0015 33.7 4.2 47 429-477 126-172 (394)
126 1sq4_A GLXB, glyoxylate-induce 27.8 96 0.0033 29.5 6.3 49 426-477 191-240 (278)
127 2b8m_A Hypothetical protein MJ 27.8 52 0.0018 26.2 3.9 45 431-477 32-76 (117)
128 1lr5_A Auxin binding protein 1 26.5 56 0.0019 28.0 4.1 50 428-477 43-98 (163)
129 1orq_C Potassium channel; volt 25.5 91 0.0031 28.2 5.6 17 156-172 100-116 (223)
130 3l2h_A Putative sugar phosphat 25.0 76 0.0026 27.0 4.7 47 428-477 48-96 (162)
131 3lag_A Uncharacterized protein 23.8 17 0.0006 28.6 0.1 50 428-477 19-69 (98)
132 1fi2_A Oxalate oxidase, germin 23.3 1.8E+02 0.006 25.9 7.0 51 428-478 74-130 (201)
133 2rnn_A E3 SUMO-protein ligase 23.3 63 0.0022 26.4 3.3 30 346-375 41-75 (114)
134 1sef_A Conserved hypothetical 23.2 1.1E+02 0.0038 28.9 5.8 47 428-477 184-231 (274)
135 2do1_A Nuclear protein HCC-1; 22.6 64 0.0022 22.6 2.9 28 346-373 14-46 (55)
136 3myx_A Uncharacterized protein 22.6 76 0.0026 29.6 4.3 31 446-478 186-216 (238)
137 3bu7_A Gentisate 1,2-dioxygena 22.5 75 0.0026 32.1 4.6 80 428-525 296-378 (394)
138 3beh_A MLL3241 protein; transm 22.4 3.6E+02 0.012 26.0 9.7 80 124-214 72-152 (355)
139 2oa2_A BH2720 protein; 1017534 22.0 1.3E+02 0.0044 25.2 5.5 48 430-477 47-98 (148)
140 2o8q_A Hypothetical protein; c 21.8 1.2E+02 0.0041 24.6 5.1 29 447-477 65-93 (134)
141 2kvu_A MKL/myocardin-like prot 21.6 88 0.003 23.5 3.6 28 346-373 30-62 (75)
142 3nw4_A Gentisate 1,2-dioxygena 21.2 1.8E+02 0.0062 28.9 7.0 80 429-526 282-361 (368)
143 2ea7_A 7S globulin-1; beta bar 20.0 1.2E+02 0.0041 31.0 5.6 52 426-477 61-113 (434)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=9.1e-36 Score=308.65 Aligned_cols=181 Identities=17% Similarity=0.242 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 008660 282 PKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDIST 361 (558)
Q Consensus 282 ~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~ 361 (558)
+..|..|+||+++||||+||||++|.|..|+++++++|++|.+++|+.+|.+++...+..+ +
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~---------------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR--R---------------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----------------
Confidence 4468899999999999999999999999999999999999999999999999865432111 0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEc
Q 008660 362 FVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIIS 441 (558)
Q Consensus 362 ~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~ 441 (558)
+++.+ +.+.++++|+|++++++.+++++..++++.|+|||.|++
T Consensus 221 ------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~ 264 (355)
T 3beh_A 221 ------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR 264 (355)
T ss_dssp ------HHHHH------------------------------HHC------------------------------------
T ss_pred ------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence 00100 236788999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHH
Q 008660 442 EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHG 521 (558)
Q Consensus 442 ~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~l 521 (558)
+||.++++|||.+|.|++...+ ...+++|++|||.++. ... ++.++++|.++|+++.+++++|.++
T Consensus 265 ~G~~~~~ly~I~~G~v~v~~~~----~~~l~~G~~fGe~~~l---~~~-------~~~~~~~A~~~~~l~~i~~~~f~~l 330 (355)
T 3beh_A 265 IGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI---SGE-------PRSATVSAATTVSLLSLHSADFQML 330 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCceEEEEEeeEEEEEECC----eeEECCCCEEeehHHh---CCC-------CcceEEEECccEEEEEEeHHHHHHH
Confidence 9999999999999999976543 2589999999998663 222 2789999999999999999999999
Q ss_pred HHHhHhhhh
Q 008660 522 IALHRRFNQ 530 (558)
Q Consensus 522 l~~~p~~~~ 530 (558)
++++|++.+
T Consensus 331 l~~~p~~~~ 339 (355)
T 3beh_A 331 CSSSPEIAE 339 (355)
T ss_dssp ---------
T ss_pred HHHCHHHHH
Confidence 999999964
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=1.5e-31 Score=253.51 Aligned_cols=184 Identities=15% Similarity=0.246 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCC
Q 008660 335 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 414 (558)
Q Consensus 335 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~ 414 (558)
++.++..+++++++.+++||+.+++|++||.||++||+|.|+ +++.+++++++.||++||.++..+++.+.++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 456677789999999999999999999999999999999998 4678899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008660 415 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH 494 (558)
Q Consensus 415 ~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 494 (558)
+++++++..++..++++.|.|||+|+++||.++++|||.+|.|++...+|. .+..+++|++|||.++. .+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-~~~~l~~G~~fGe~~~~--~~~~----- 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-IATSLSDGSYFGEICLL--TRER----- 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-EEEEECTTCEESCHHHH--HSSC-----
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-EEEEecCCCEechHHHc--CCCc-----
Confidence 999999999999999999999999999999999999999999998776665 57899999999998663 2322
Q ss_pred CCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 495 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 495 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+.++++|.++|+++.|++++|.++++++|++..
T Consensus 153 ---~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 185 (198)
T 2ptm_A 153 ---RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRK 185 (198)
T ss_dssp ---CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred ---cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHH
Confidence 889999999999999999999999999999963
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.98 E-value=4.2e-31 Score=251.35 Aligned_cols=183 Identities=20% Similarity=0.269 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCC
Q 008660 335 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 414 (558)
Q Consensus 335 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~ 414 (558)
++.++..+++++++.+++||+.+++|++||.||++||+|.|.. ++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~ 81 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA 81 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence 4566778899999999999999999999999999999999984 788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008660 415 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH 494 (558)
Q Consensus 415 ~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 494 (558)
+++++++..++..++++.|.|||+|+++||.++++|||.+|.|++...+|. ...+++|++|||.++. .+.+
T Consensus 82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~--~~~l~~G~~fGe~~~~--~~~~----- 152 (202)
T 3bpz_A 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK--EMKLSDGSYFGEICLL--TRGR----- 152 (202)
T ss_dssp TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSC--CEEEETTCEECHHHHH--HCSB-----
T ss_pred cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCe--EEEEcCCCEeccHHHh--cCCC-----
Confidence 999999999999999999999999999999999999999999998776664 3479999999998663 2322
Q ss_pred CCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 495 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 495 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+.++++|.++|+++.|++++|.++++++|++..
T Consensus 153 ---~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 185 (202)
T 3bpz_A 153 ---RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRR 185 (202)
T ss_dssp ---CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHH
T ss_pred ---cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHH
Confidence 789999999999999999999999999999864
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.2e-31 Score=256.94 Aligned_cols=185 Identities=17% Similarity=0.322 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCC
Q 008660 335 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 414 (558)
Q Consensus 335 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~ 414 (558)
++.++..+++++|+.+++||+++++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ ++|+|+
T Consensus 6 ~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~ 84 (212)
T 3ukn_A 6 RMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFE 84 (212)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhh
Confidence 5666777899999999999999999999999999999999999899999999999999999999999998877 899999
Q ss_pred CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008660 415 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH 494 (558)
Q Consensus 415 ~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 494 (558)
+++++++..++..++++.|.|||+|+++||.++++|||.+|.|++..++ . .+..+++|++|||.++. .+.
T Consensus 85 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~-~~~~l~~G~~fGe~~~~--~~~------ 154 (212)
T 3ukn_A 85 SASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-T-VLAILGKGDLIGSDSLT--KEQ------ 154 (212)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-C-EEEEECTTCEEECSCCS--SSS------
T ss_pred cCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-e-EEEEecCCCCcCcHHhc--cCC------
Confidence 9999999999999999999999999999999999999999999988643 3 57899999999998663 121
Q ss_pred CCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 495 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 495 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.++++++++|.++|+++.|++++|.++++++|++..
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 190 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQ 190 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence 113889999999999999999999999999999964
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=6.5e-22 Score=190.95 Aligned_cols=210 Identities=13% Similarity=0.117 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhh
Q 008660 25 IENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQ 104 (558)
Q Consensus 25 ~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~ 104 (558)
.||.+++++.+++++..++..+ ...+......+..+|.+++++|.+|++++|.++..
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~----------~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~------------- 65 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECT----------MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------- 65 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHH----------HHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----------cccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc-------------
Confidence 5888877777777654432100 01112233467899999999999999999998632
Q ss_pred hccccccCCceecChhHHhhhhhhhhhhhhccccceeeeeeccCCCCcchhhHHHHHHHHhHHHhhhhhHhhHhhhhhhh
Q 008660 105 QLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIA 184 (558)
Q Consensus 105 ~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~r~~~l~~~~~~~~~~~~ 184 (558)
+++-.|+ +++|++|++|++.... +.. +......++.+|++|++|+.|+.+...+....+.
T Consensus 66 --------------~~~y~~~-~iiDllailP~~~~~~----~~~-~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~ 125 (223)
T 1orq_C 66 --------------PAGYVKK-TLYEIPALVPAGLLAL----IEG-HLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIA 125 (223)
T ss_dssp --------------HHHHHHH-HHHHCTTHHHHHHHHH----HHH-HHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred --------------HHHHHHH-hHHHHHHHHHHHHHHH----Hhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121255 8999999999875431 000 0000123455555555555555442222111111
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCCccccccccccCCCCCCCCCccc
Q 008660 185 DATW-GIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYN 263 (558)
Q Consensus 185 ~~~~-~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~ 263 (558)
.... .++...++..++..|+.||++|++.. ++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------~~-------------------- 158 (223)
T 1orq_C 126 DAADKIRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------PD-------------------- 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------SS--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CC--------------------
Confidence 1110 12333344445568999999887531 00
Q ss_pred cchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 264 FGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 264 ~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
+++....|..|+||+++||||+||||++|.|..|++++++.|++|..++|+.+|.+++...
T Consensus 159 --------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 159 --------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp --------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112236889999999999999999999999999999999999999999999999987654
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=164.27 Aligned_cols=138 Identities=19% Similarity=0.298 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc
Q 008660 383 IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK 462 (558)
Q Consensus 383 ~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~ 462 (558)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++..+
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 463 SKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 463 ~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+. .+..+++|++|||..+. .. ...++.++++|.++|+++.+++++|.++++++|++..
T Consensus 85 ~~--~~~~~~~G~~fG~~~~~---~~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 142 (160)
T 4f8a_A 85 DE--VVAILGKGDVFGDVFWK---EA-----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSH 142 (160)
T ss_dssp TE--EEEEEETTCEEECCTTT---CS-----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CE--EEEEecCCCEeCcHHHh---cC-----cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHH
Confidence 43 57899999999998663 22 1012789999999999999999999999999999964
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.78 E-value=9e-19 Score=188.35 Aligned_cols=230 Identities=11% Similarity=0.152 Sum_probs=140.1
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceE-----------------eeCCCcceeehhhHHHHHHHH
Q 008660 17 YRK-AIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCI-----------------HCNDTLGITATVIRSILDFLK 78 (558)
Q Consensus 17 ~P~-s~~~~~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~f 78 (558)
+|+ |...+.++.++++++++++++..+. ..|......... .........+.++|.+++++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 476 5777888888877777776543321 011100000000 000112345788999999999
Q ss_pred HHHHHHhhhhceeccchhhhhhhhhhhccccccCCceecChhHHhhhhhhhhhhhhccccceeeeeeccCCCC-c----c
Q 008660 79 LLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGF-S----T 153 (558)
Q Consensus 79 ~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~~i~~~~~~~~~~~-~----~ 153 (558)
.+|++++|.++-- .. +-+.+.|.++|+++++|+.+.... +.... + .
T Consensus 253 tiE~ilR~~~~~~--------------------k~------~Y~ks~wniiDli~iip~~i~l~~---~~~~~~~~~~~~ 303 (514)
T 2r9r_B 253 SFEFLVRFFACPS--------------------KA------GFFTNIMNIIDIVAIIPYYVTIFL---TESNKSVLQFQN 303 (514)
T ss_dssp HHHHHHHHHHSSC--------------------SS------SSTTSHHHHHHHHTTHHHHHHHHH---HHTSCSHHHHHT
T ss_pred HHHHHHHHHhCCc--------------------HH------HHHhchhHHHHHHHHHHHHHHHHh---hhccccchhhhh
Confidence 9999999987521 00 111156899999999998543211 11111 1 0
Q ss_pred hhhHHHHHHHHhHHHhhhhhHhhHhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCC
Q 008660 154 AMTFFVLQYLLRVIRTYFLFTDAIEVS---GVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTG 230 (558)
Q Consensus 154 ~~~~~~l~rl~Rl~r~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~ 230 (558)
...+++++|++|++|++|+.+...... ..+..+ ...+...+++.++..+++||+.|++..
T Consensus 304 ~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~e~---------------- 366 (514)
T 2r9r_B 304 VRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFAEA---------------- 366 (514)
T ss_dssp THHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhheeec----------------
Confidence 123556666666666666665433221 111111 112222223333447777887765320
Q ss_pred CCCcceecCCCccccccccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChh
Q 008660 231 RSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVG 310 (558)
Q Consensus 231 ~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~ 310 (558)
|. +.+.+..|..|+||++.||||+||||+.|.|..
T Consensus 367 ----------------~~-----------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~ 401 (514)
T 2r9r_B 367 ----------------DE-----------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIG 401 (514)
T ss_dssp ----------------TC-----------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHH
T ss_pred ----------------cC-----------------------------CCccccchhhhhheeeeEEEecccCCCCCCCcc
Confidence 00 112234578899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 311 ENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 311 E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
++++++++|++|.+++++.+|.+.+..+
T Consensus 402 gr~f~~~~~l~G~~~l~l~iavI~~~f~ 429 (514)
T 2r9r_B 402 GKIVGSLCAIAGVLTIALPVPVIVSNFN 429 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986444
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.75 E-value=6e-18 Score=150.02 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEE
Q 008660 389 DLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGL 468 (558)
Q Consensus 389 ~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~ 468 (558)
++|+.+|.+...+...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. +|. .+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g~-~~ 84 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EGV-KL 84 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TTE-EE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CCE-EE
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999865 443 57
Q ss_pred EEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhh
Q 008660 469 KRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 531 (558)
Q Consensus 469 ~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~ 531 (558)
..+++|++|||..+. .+.+ +.++++|.++|+++.|++++|.++++++|.++++
T Consensus 85 ~~~~~G~~fGe~~~l--~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 85 CTMGPGKVFGELAIL--YNCT--------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEECTTCEESCHHHH--HCCC--------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEeCCCCEeccHHHH--CCCC--------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 899999999998763 2322 7899999999999999999999999999998654
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.68 E-value=1.3e-15 Score=142.42 Aligned_cols=124 Identities=14% Similarity=0.257 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecC
Q 008660 397 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQED 473 (558)
Q Consensus 397 ~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~ 473 (558)
+...+...+.++++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|++.. .+| ...+..+++
T Consensus 31 ~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~ 110 (187)
T 3gyd_A 31 DKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGA 110 (187)
T ss_dssp GGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEET
T ss_pred HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccC
Confidence 34455567889999999999999999999999999999999999999999999999999999654 344 445679999
Q ss_pred CCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 474 GNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 474 G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
|++|||.++. .+.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 111 G~~fGe~~~l--~~~~--------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 157 (187)
T 3gyd_A 111 GAIIGEMSMI--DGMP--------RSASCVASLPTDFAVLSRDALYQLLANMPKLGN 157 (187)
T ss_dssp TCEESHHHHH--HCCC--------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCeeeeHHHh--CCCC--------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHH
Confidence 9999998763 2322 789999999999999999999999999999964
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.68 E-value=3.5e-16 Score=142.30 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCC
Q 008660 397 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDG 474 (558)
Q Consensus 397 ~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~-~~~~~~l~~G 474 (558)
+-......+.++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|++.. .+| ...+..+++|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 33445567899999999999999999999999999999999999999999999999999999654 333 4456799999
Q ss_pred CeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhh
Q 008660 475 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 531 (558)
Q Consensus 475 ~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~ 531 (558)
++|||.++. ... ++.++++|.++|+++.|++++|.++++++|.++++
T Consensus 110 ~~fGe~~~~---~~~-------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 110 GSFGELALM---YNT-------PRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp CEECGGGGT---CCC-------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred CEechHHHH---cCC-------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 999998773 222 27899999999999999999999999999998653
No 11
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.67 E-value=1.4e-15 Score=135.70 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=103.3
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~ 480 (558)
.+.++++|+|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. +++...+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 3578899999999999999999999999999999999999999999999999999754 3344457799999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++. ... ++..+++|.++|+++.+++++|.++++++|++..
T Consensus 84 ~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 123 (149)
T 2pqq_A 84 SLF---DPG-------PRTATGTALTEVKLLALGHGDLQPWLNVRPEVAT 123 (149)
T ss_dssp GGT---SCE-------ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHH
T ss_pred Hhc---CCC-------CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHH
Confidence 663 221 2788999999999999999999999999999854
No 12
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.66 E-value=6.9e-16 Score=136.69 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=100.6
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEE---EEEecCCCee
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIG---LKRQEDGNYC 477 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~---~~~l~~G~~f 477 (558)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ... +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3568899999999999999999999999999999999999999999999999999754 333 334 6799999999
Q ss_pred ehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 478 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 478 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
||.++. ... ++.++++|.++|+++.|++++|.++++++|++..
T Consensus 85 G~~~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 127 (142)
T 3mdp_A 85 GVSSLI---KPY-------HYTSSARATKPVRVVDINGARLREMSENNQALGQ 127 (142)
T ss_dssp CGGGSS---TTC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred chHHHc---CCC-------CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHH
Confidence 998763 221 2788999999999999999999999999999964
No 13
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.65 E-value=1.2e-16 Score=140.98 Aligned_cols=126 Identities=35% Similarity=0.626 Sum_probs=103.4
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCce-EEEE--EecCCCeeehh
Q 008660 405 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKL-IGLK--RQEDGNYCGEE 480 (558)
Q Consensus 405 ~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~~-~~~~--~l~~G~~fGe~ 480 (558)
+.++++|+|++++++.++.++..++.+.|.+||+|+++||.++.+|||.+|.|++.. .+|. ..+. .+++|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 457899999999999999999999999999999999999999999999999999653 3332 1233 89999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 531 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~ 531 (558)
.+.+.+... +....|.++++++|.++|+++.|++++|.++++++|+++++
T Consensus 86 ~l~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k 135 (137)
T 1wgp_A 86 LLTWALDPK-SGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS 135 (137)
T ss_dssp HHHHHHCSS-CCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred HHHHHhccc-cccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence 741113432 11122236789999999999999999999999999999764
No 14
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.64 E-value=1.3e-15 Score=153.00 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=119.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCc
Q 008660 385 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSK 464 (558)
Q Consensus 385 ~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~ 464 (558)
....++|+..|.+...+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|++..++
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g- 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG- 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999986644
Q ss_pred eEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 465 LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 465 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
. .+..+.+|++|||.++. .+. +|.+|++|.++|+++.|++++|.++++.+|....
T Consensus 98 ~-~~~~~~~G~~fGe~~ll--~~~--------~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 98 V-KLCTMGPGKVFGELAIL--YNC--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp E-EEEEECTTCEESCSGGG--TTT--------BCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred E-EEEEeCCCCeeeHhHHh--cCC--------CCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 3 57899999999999774 222 2899999999999999999999999999998654
No 15
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.64 E-value=1.8e-15 Score=136.58 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=104.8
Q ss_pred HHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008660 401 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE 480 (558)
Q Consensus 401 ~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~ 480 (558)
....+.++++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++..+ |. .+..+++|++|||.
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~~-~~~~~~~G~~fGe~ 111 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-NE-WATSVGEGGSFGEL 111 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET-TE-EEEEECTTCEECCH
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEC-CE-EEEEecCCCEeeeh
Confidence 34467889999999999999999999999999999999999999999999999999998774 43 57799999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++. .+.+ +.++++|.++|+++.|++++|.++++++|..++
T Consensus 112 ~~~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 112 ALI--YGTP--------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp HHH--HCCC--------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred Hhh--cCCC--------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 763 2332 789999999999999999999999999999864
No 16
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.63 E-value=3.5e-15 Score=131.64 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=101.3
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 483 (558)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++...+ ...+++|++||+..+.
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~~~~~~G~~~G~~~~~ 85 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI 85 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----CEEECTTCEECHHHHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----cceECCCCEeeehHhc
Confidence 467999999999999999999999999999999999999999999999999999987544 2478999999998663
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+.+ +..+++|.++|+++.|++++|.++++++|++..
T Consensus 86 --~~~~--------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 122 (138)
T 1vp6_A 86 --SGEP--------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAE 122 (138)
T ss_dssp --HCCC--------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred --cCCC--------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHH
Confidence 1222 788999999999999999999999999999954
No 17
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.62 E-value=5.2e-15 Score=132.72 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS------E--------TTRAHKINQKLRQI 350 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s------~--------~~~~~~~~~~~~~i 350 (558)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++ + ..+.++..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999983 1 22223445578899
Q ss_pred HHHHHhCCCCHHHHHH
Q 008660 351 KHWKHFKDISTFVRAK 366 (558)
Q Consensus 351 ~~~m~~~~lp~~L~~r 366 (558)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 18
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.62 E-value=7.4e-15 Score=131.85 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=101.8
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 480 (558)
.+.++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 4678999999999999999999999999999999999999999999999999999764 223 3346799999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+. ... |.+..+++|.++|+++.|++++|.++++++|++..
T Consensus 91 ~~~---~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 131 (154)
T 2z69_A 91 MMF---MDT------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 131 (154)
T ss_dssp GGG---SSC------SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred hhc---cCC------CCCceEEEEccceEEEEECHHHHHHHHHHChHHHH
Confidence 763 221 22688999999999999999999999999999854
No 19
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.60 E-value=2.8e-14 Score=135.82 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=99.1
Q ss_pred hcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhh
Q 008660 407 LGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 407 l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~ 483 (558)
|+++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. .+| ...+..+++|++||+.++.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 4689999999999999999999999999999999999999999999999999654 333 4456799999999998663
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+.+ +..+++|.++|+++.+++++|.++++++|++..
T Consensus 81 --~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 117 (216)
T 4ev0_A 81 --DEGE--------RSASAVAVEDTELLALFREDYLALIRRLPLVAH 117 (216)
T ss_dssp --HCCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred --CCCC--------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHH
Confidence 2222 789999999999999999999999999999865
No 20
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.60 E-value=1.4e-15 Score=136.68 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 283 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 283 ~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
..|..|+||+++|+|||||||++|.|..+++++++.+++|..++|+.+|.+++...
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~ 138 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFV 138 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999997654
No 21
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.60 E-value=1.3e-14 Score=135.87 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=102.4
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 480 (558)
..+++++|.|.+++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|++.. .+| ...+..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 4567888999999999999999999999999999999999999999999999999654 344 4456789999999986
Q ss_pred -hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 -IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 -~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++. ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 86 ~~~~---~~~-------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 126 (194)
T 3dn7_A 86 MAFQ---KQQ-------PADFYIQSVENCELLSITYTEQENLFERIPALER 126 (194)
T ss_dssp HHHH---HTC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHH
T ss_pred HHHh---cCC-------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHH
Confidence 552 322 2788999999999999999999999999999864
No 22
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-16 Score=136.87 Aligned_cols=126 Identities=10% Similarity=0.133 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeC-CCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEE
Q 008660 392 DDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFS-ERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKR 470 (558)
Q Consensus 392 ~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~-~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~ 470 (558)
|+.|.+-......+.++++++|.+++++.++.++..++.+.|. +|++|+++|+.++.+|||.+|.|++...+|.. ..
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--~~ 80 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV--EN 80 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE--EE
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE--EE
Confidence 3344443344445678999999999999999999999999999 99999999999999999999999988766653 67
Q ss_pred ecCCCeeehhhhhhhhccCCCCCCCCccccEE-EEeceEEEEEEcHHHHHHHHHHhHhhh
Q 008660 471 QEDGNYCGEEIIDWAENQSSSHGHLPISTRTI-IAHTNVEGFTLKTDELKHGIALHRRFN 529 (558)
Q Consensus 471 l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~p~~~ 529 (558)
+++|++||+.++. ... ++..++ +|.++|+++.|++++|.++++++++-.
T Consensus 81 l~~G~~fG~~~~~---~~~-------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (134)
T 2d93_A 81 LFMGNSFGITPTL---DKQ-------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSG 130 (134)
T ss_dssp ECTTCEESCCSSS---CCE-------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSSS
T ss_pred ecCCCccChhHhc---CCC-------cceeEEEEEecceEEEEEeHHHHHHHHHHHHhcc
Confidence 9999999998663 221 266788 999999999999999999999887653
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.57 E-value=4.2e-14 Score=136.84 Aligned_cols=119 Identities=11% Similarity=0.082 Sum_probs=105.0
Q ss_pred HHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeee
Q 008660 402 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCG 478 (558)
Q Consensus 402 l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fG 478 (558)
...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 345788999999999999999999999999999999999999999999999999999654 333 44567999999999
Q ss_pred hhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 479 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 479 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+..+. .+.+ +..+++|.++|+++.+++++|.++++++|++..
T Consensus 88 ~~~~~--~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 129 (237)
T 3fx3_A 88 EAVAL--RNTP--------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICI 129 (237)
T ss_dssp HHHHH--HTCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred hHHHh--cCCC--------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHH
Confidence 98763 2322 788999999999999999999999999999864
No 24
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.6e-14 Score=138.73 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=105.3
Q ss_pred HHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhh
Q 008660 402 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEI 481 (558)
Q Consensus 402 l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~ 481 (558)
+....++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++...++. .+..+++|++|||.+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-~~~~l~~g~~fGe~~ 200 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-VINKLKDHDYFGEVA 200 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-EEEEEETTCEECHHH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-eEEEcCCCCcccHHH
Confidence 3456678899999999999999999999999999999999999999999999999998875544 578999999999997
Q ss_pred hhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 482 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 482 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+. .+.+ |.++++|.++|+++.|++++|.+++..+|++.+
T Consensus 201 ~~--~~~~--------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 201 LL--NDLP--------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HH--HTCB--------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred Hh--CCCC--------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 74 2332 899999999999999999999999999999854
No 25
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.56 E-value=3.4e-14 Score=136.50 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=103.4
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 480 (558)
.+.++++|+|.+++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. .+| ...+..+++|++|||.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 3578999999999999999999999999999999999999999999999999999754 333 4456799999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++. ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 85 ~~~---~~~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (227)
T 3d0s_A 85 SIF---DPG-------PRTSSATTITEVRAVSMDRDALRSWIADRPEISE 124 (227)
T ss_dssp HHH---SCS-------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHH
T ss_pred HHc---CCC-------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence 763 322 2788999999999999999999999999999864
No 26
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.56 E-value=2.6e-14 Score=123.57 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 283 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAH 341 (558)
Q Consensus 283 ~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~ 341 (558)
..|..|+||++.|+|||||||++|.|..+++++++.+++|..++|+.+|.+++...+..
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999997766443
No 27
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.55 E-value=3.7e-14 Score=136.69 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=102.7
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 480 (558)
.+.++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 3678999999999999999999999999999999999999999999999999999754 333 3456799999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++. ... ++..+++|.++|+++.+++++|.++++++|++..
T Consensus 85 ~~~---~~~-------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (231)
T 3e97_A 85 AVL---AHQ-------ERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124 (231)
T ss_dssp TTT---CCC-------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred HHh---CCC-------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 663 221 2789999999999999999999999999999864
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.55 E-value=4.3e-14 Score=144.20 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=103.9
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI 481 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~ 481 (558)
.+.++++|+|++++++.+..++..++.+.|.+||+|+++||.++.+|||.+|.|++.. .+|...+..+++|++|||.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 4678999999999999999999999999999999999999999999999999999754 44544678999999999997
Q ss_pred hhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 482 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 482 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+. .+.+ ++++++|.++|+++.|++++|.+++ ++|++..
T Consensus 92 l~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~ 129 (333)
T 4ava_A 92 LL--RDSP--------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGE 129 (333)
T ss_dssp HH--HTCB--------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHH
T ss_pred hc--CCCC--------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHH
Confidence 64 2332 8899999999999999999999999 9999964
No 29
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.55 E-value=7.9e-14 Score=134.70 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=103.2
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhc--CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeee
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGC--LKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~--l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~---~~~~~~~~~l~~G~~fG 478 (558)
...++++|+|.+++++.++.++.. ++.+.|.+||+|+++||.++.+|||.+|.|++.. +++...+..+++|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 466889999999999999999998 9999999999999999999999999999999754 33344577999999999
Q ss_pred hhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 479 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 479 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
|.++. .. .|.+.++++|.++|+++.+++++|.++++++|++..
T Consensus 97 ~~~~~---~~------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 139 (232)
T 1zyb_A 97 PQSLF---GM------NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRL 139 (232)
T ss_dssp GGGGS---SS------CCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHH
T ss_pred ehHHh---CC------CCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHH
Confidence 98763 22 122688999999999999999999999999999854
No 30
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.54 E-value=1.6e-13 Score=130.92 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=101.0
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCe--eeh
Q 008660 405 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNY--CGE 479 (558)
Q Consensus 405 ~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~--fGe 479 (558)
++++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. .+| ...+..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578899999999999999999999999999999999999999999999999999654 333 445679999999 688
Q ss_pred hhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 480 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 480 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.++. ... ++..+++|.++|+++.+++++|.++++++|++..
T Consensus 83 ~~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 123 (220)
T 3dv8_A 83 SCIM---RSI-------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVAN 123 (220)
T ss_dssp GGGC---TTC-------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred HHHh---CCC-------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHH
Confidence 7662 322 2788999999999999999999999999999864
No 31
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.54 E-value=2.2e-13 Score=130.94 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=92.8
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~ 480 (558)
...+++.++|.+++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. .+ +...+..+++|++|||.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 4568899999999999999999999999999999999999999999999999999654 33 44457799999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHh-----Hhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALH-----RRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~-----p~~~~ 530 (558)
.+. .. .+++.++++|.++|+++.+++++|.++++++ |++..
T Consensus 90 ~~~---~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~ 135 (230)
T 3iwz_A 90 GLF---IE------SDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILY 135 (230)
T ss_dssp GGT---SC------CSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHH
T ss_pred hhh---cC------CCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHH
Confidence 663 21 1127889999999999999999999999999 98854
No 32
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.5e-14 Score=137.05 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=103.5
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 483 (558)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|++..++. .+..+++|++|||.++.
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~--~~~~~~~g~~fGe~~l~ 83 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN--KVNSSGPGSSFGELALM 83 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS--CCEEECTTCEECHHHHH
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE--EEEecCCCCeeehhHHh
Confidence 5788999999999999999999999999999999999999999999999999999876444 36899999999998774
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+.+ +.++++|.++|+++.|++++|.+++.++|..+.
T Consensus 84 --~~~~--------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (246)
T 3of1_A 84 --YNSP--------RAATVVATSDCLLWALDRLTFRKILLGSSFKKR 120 (246)
T ss_dssp --HTCC--------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHH
T ss_pred --cCCC--------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHH
Confidence 2332 889999999999999999999999999997643
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.52 E-value=7.2e-14 Score=140.22 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=105.5
Q ss_pred HHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---C-ceEEEEEecCCCe
Q 008660 401 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---S-KLIGLKRQEDGNY 476 (558)
Q Consensus 401 ~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~---~-~~~~~~~l~~G~~ 476 (558)
..+...++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++... + +...+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 34567888999999999999999999999999999999999999999999999999997652 2 3345779999999
Q ss_pred eehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 477 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 477 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
|||.++. ... ++.++++|.++|+++.|++++|.++++++|++..
T Consensus 233 fGe~~ll---~~~-------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 276 (299)
T 3shr_A 233 FGEKALQ---GED-------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSN 276 (299)
T ss_dssp ECGGGGS---SSE-------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCH
T ss_pred eChHHHh---CCC-------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHH
Confidence 9999773 222 2889999999999999999999999999999954
No 34
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.52 E-value=1.4e-14 Score=127.76 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHhCCCC
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAH---KINQKLRQIKH-WKHFKDIS 360 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~---~~~~~~~~i~~-~m~~~~lp 360 (558)
|..|+||+++|+|||||||++|.|..|++++++.|++|++++|+++|.+++...+.+ +.+++.+.+++ ..+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 788999999999999999999999999999999999999999999999996443211 11122222222 23345666
Q ss_pred HHHHHHHHHHHH
Q 008660 361 TFVRAKIREAKR 372 (558)
Q Consensus 361 ~~L~~rv~~y~~ 372 (558)
++.+..+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 35
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=2.1e-13 Score=136.12 Aligned_cols=120 Identities=17% Similarity=0.321 Sum_probs=104.6
Q ss_pred HHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc--eEEEEEecCCCee
Q 008660 402 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK--LIGLKRQEDGNYC 477 (558)
Q Consensus 402 l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~--~~~~~~l~~G~~f 477 (558)
+....++++++|.++++..+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++.. .+| ...+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 345677889999999999999999999999999999999999999999999999999764 222 3467899999999
Q ss_pred ehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhh
Q 008660 478 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 531 (558)
Q Consensus 478 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~ 531 (558)
||.++. ... +|.++++|.++|+++.|++++|.+++..+|++.++
T Consensus 234 Ge~~ll---~~~-------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 277 (291)
T 2qcs_B 234 GEIALL---MNR-------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 277 (291)
T ss_dssp CSGGGT---CCC-------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTT
T ss_pred cHHHHc---CCC-------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHH
Confidence 998773 222 28899999999999999999999999999998653
No 36
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.51 E-value=2.2e-13 Score=131.29 Aligned_cols=113 Identities=15% Similarity=0.222 Sum_probs=98.8
Q ss_pred cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehhhhhh
Q 008660 408 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEEIIDW 484 (558)
Q Consensus 408 ~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~~l~~ 484 (558)
.++|+|.+++++.++.++..++.+.|.|||+|+++||.++.+|||.+|.|++.. +++...+..+++|++||+.++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~- 91 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF- 91 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH-
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh-
Confidence 367899999999999999999999999999999999999999999999999753 2333457899999999998663
Q ss_pred hhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 485 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 485 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+.+ +..+++|.++|+++.+++++|.++++++|++..
T Consensus 92 -~~~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 128 (232)
T 2gau_A 92 -AEET--------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCR 128 (232)
T ss_dssp -HTSC--------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred -CCCC--------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHH
Confidence 1222 788999999999999999999999999999864
No 37
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.50 E-value=7.1e-14 Score=134.12 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=102.7
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008660 404 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 480 (558)
Q Consensus 404 ~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 480 (558)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 4678999999999999999999999999999999999999999999999999999654 333 3346789999999998
Q ss_pred hhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+. .. .|.+..+++|.++|+++.+++++|.++++++|++..
T Consensus 88 ~~~---~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 128 (227)
T 3dkw_A 88 MMF---MD------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 128 (227)
T ss_dssp TTT---TT------CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHH
T ss_pred Hhc---CC------CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 662 22 222678999999999999999999999999999864
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.50 E-value=1e-13 Score=138.41 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008660 400 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 479 (558)
Q Consensus 400 ~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe 479 (558)
.+...+.++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++.. +|. .+..+++|++|||
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g~-~~~~l~~G~~fGe 111 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNE-WATSVGEGGSFGE 111 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TTE-EEEEECTTCEECG
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CCe-EEEEcCCCCccch
Confidence 34556889999999999999999999999999999999999999999999999999999877 443 5789999999999
Q ss_pred hhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 480 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 480 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.++. ... ++.++++|.++|+++.|++++|.+++..+|.+..
T Consensus 112 ~~l~---~~~-------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (291)
T 2qcs_B 112 LALI---YGT-------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 152 (291)
T ss_dssp GGGT---CCC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHh---cCC-------CCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHH
Confidence 8763 221 2889999999999999999999999999999854
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=1.8e-13 Score=144.03 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCC
Q 008660 397 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDG 474 (558)
Q Consensus 397 ~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~-~~~~~~l~~G 474 (558)
+-..+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|+|.+|.|+++. .+| ...+..+++|
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G 216 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 216 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCC
Confidence 33445557889999999999999999999999999999999999999999999999999999754 333 4457799999
Q ss_pred CeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 475 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 475 ~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++|||.++. .+.+ |.+|++|.++|+++.|++++|.+++.++|..+.
T Consensus 217 ~~fGe~all--~~~p--------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 217 GSFGELALM--YNTP--------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp CEECGGGGT--SCCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CEEeeHHHh--cCCC--------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 999999774 1222 899999999999999999999999999999754
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.47 E-value=3.7e-13 Score=143.91 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc---
Q 008660 390 LPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK--- 464 (558)
Q Consensus 390 Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~--- 464 (558)
.|+..|.+-..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|.+.. .+|
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 577778877778888999999999999999999999999999999999999999999999999999999765 333
Q ss_pred eEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 465 LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 465 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
...+..+++|++|||.+ . .+.+ +.++++|.++|+++.|++++|.++++++|++..
T Consensus 107 ~~~~~~~~~G~~fGe~~-l--~~~~--------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~ 161 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-L--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (469)
T ss_dssp CEEEEEECTTCEECGGG-G--GTCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTT
T ss_pred ceEEEEccCCCCcchhh-h--CCCC--------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHH
Confidence 25678999999999987 3 2333 889999999999999999999999999999653
No 41
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.46 E-value=1.3e-12 Score=123.70 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=92.8
Q ss_pred cCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhc
Q 008660 411 QKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAEN 487 (558)
Q Consensus 411 ~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~ 487 (558)
++++.++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+..+. .+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~--~~ 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EE 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTT--ST
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHh--cC
Confidence 466779999999999999999999999999999999999999999999654 333 4456799999999998663 12
Q ss_pred cCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 488 QSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 488 ~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
. +++.++++|.++|+++.+++++|.++++++|++..
T Consensus 80 ~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (210)
T 3ryp_A 80 G-------QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 115 (210)
T ss_dssp T-------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred C-------CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHH
Confidence 1 12788999999999999999999999999999864
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=142.31 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008660 400 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 479 (558)
Q Consensus 400 ~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe 479 (558)
.+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++..+ . .+..+++|++|||
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~-~-~v~~l~~G~~fGe 202 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNG-E-WVTNISEGGSFGE 202 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETT-E-EEEEEESSCCBCG
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECC-e-EeeeCCCCCEEEc
Confidence 3445688999999999999999999999999999999999999999999999999999988644 3 5778999999999
Q ss_pred hhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 480 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 480 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.++. .+. +|.+|++|.++|+++.|++++|.+++.++|..+.
T Consensus 203 ~all--~~~--------~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~ 243 (381)
T 4din_B 203 LALI--YGT--------PRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKR 243 (381)
T ss_dssp GGGT--SCC--------BCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hHHh--cCC--------CcceEEEECCCEEEEEEchHHHHHhhhhhhHHHH
Confidence 9774 122 2889999999999999999999999999998864
No 43
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.44 E-value=2.3e-12 Score=121.67 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=91.3
Q ss_pred CCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehhhhhhhhccCCCC
Q 008660 416 WEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEEIIDWAENQSSSH 492 (558)
Q Consensus 416 ~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~ 492 (558)
++++.++.++..++.+.|.||++|+++||.++.+|||.+|.|++.. . ++...+..+++|++|||..+. .+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~--~~~---- 74 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLF--EKE---- 74 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTC--C------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHh--cCC----
Confidence 5789999999999999999999999999999999999999999754 3 344457799999999998663 111
Q ss_pred CCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 493 GHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 493 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
...+++.++++|.++|+++.+++++|.++++++|++..
T Consensus 75 ~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 112 (207)
T 2oz6_A 75 GSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILY 112 (207)
T ss_dssp ---CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHH
Confidence 00002788999999999999999999999999999864
No 44
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.44 E-value=1.3e-12 Score=115.86 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE 336 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 336 (558)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++++|.+++.
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 92 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW 92 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999943
No 45
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.43 E-value=4.8e-13 Score=127.87 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=98.3
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCCCeeehhhh
Q 008660 405 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDGNYCGEEII 482 (558)
Q Consensus 405 ~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~-~~~~~~l~~G~~fGe~~l 482 (558)
..++++|+|.+++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 467899999999999999999999999999999999999999999999999999743 333 445679999999998
Q ss_pred hhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 483 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 483 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 81 ------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 114 (220)
T 2fmy_A 81 ------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSL 114 (220)
T ss_dssp ------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred ------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 2 678999999999999999999999999999864
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=140.55 Aligned_cols=120 Identities=17% Similarity=0.308 Sum_probs=105.1
Q ss_pred HHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---Cc-eEEEEEecCCCe
Q 008660 401 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---SK-LIGLKRQEDGNY 476 (558)
Q Consensus 401 ~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~---~~-~~~~~~l~~G~~ 476 (558)
.++...++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++... ++ ...+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 34557788899999999999999999999999999999999999999999999999998652 22 335789999999
Q ss_pred eehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 477 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 477 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
|||.++. ... +|.++++|.++|+++.|++++|.+++..+|++.+
T Consensus 324 fGe~all---~~~-------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 324 FGEIALL---LNR-------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp ECTTGGG---SCC-------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred echHHHh---CCC-------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 9999773 322 2889999999999999999999999999999854
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=1.1e-12 Score=140.26 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHhcCCcCCCCCCHHHHHHHHhcCeeE-EeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008660 402 FGRNLLGQMQKFENWEDYSLDHLCGCLKPV-FFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE 480 (558)
Q Consensus 402 l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~-~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~ 480 (558)
...+.++++++|.+++++.+..++..++.. .|.+|++|+++||.++.+|||.+|.|++...++. .+..+++|++|||.
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~-~~~~l~~G~~fGe~ 412 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKL 412 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGG
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe-eEEEecCCCEEEEe
Confidence 345778999999999999999999999854 8999999999999999999999999998775443 57899999999999
Q ss_pred hhhhhhccCCCCCCCCccccEEEEec-eEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHT-NVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++. ... ++.+|++|.+ +|+++.|++++|.++++++|++..
T Consensus 413 ~ll---~~~-------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~ 453 (469)
T 1o7f_A 413 ALV---NDA-------PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 453 (469)
T ss_dssp GGT---CCS-------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred hhh---cCC-------CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence 773 322 2899999998 799999999999999999999854
No 48
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.41 E-value=1.3e-12 Score=152.38 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=109.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---
Q 008660 385 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--- 461 (558)
Q Consensus 385 ~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--- 461 (558)
..|+.-| .-|.+=-.++-.+.|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++.+|+|.+|.|+|..
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3444433 334333333445779999999999999999999999999999999999999999999999999999864
Q ss_pred --cCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhh
Q 008660 462 --KSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529 (558)
Q Consensus 462 --~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~ 529 (558)
.++...+..+++|+.||| ++. .+.+ |++|++|.++|++++|++++|..++.+||+..
T Consensus 102 ~~~~~~~~v~~l~~G~sFGE-all--~n~p--------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 SSHQDAVTICTLGIGTAFGE-SIL--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SCTTSCEEEEEEETTCEECG-GGG--GTCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCceeEEEecCCcchhh-hhc--cCCC--------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 223446789999999999 453 1322 99999999999999999999999999999854
No 49
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.40 E-value=1.2e-12 Score=125.29 Aligned_cols=108 Identities=8% Similarity=0.071 Sum_probs=96.3
Q ss_pred HhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCCCeeehhhhh
Q 008660 406 LLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 406 ~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~-~~~~~~l~~G~~fGe~~l~ 483 (558)
+++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ...+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 36789999999999999999999999999999999999999999999999999743 344 44567999999999
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 76 ----~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 110 (222)
T 1ft9_A 76 ----MH--------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAW 110 (222)
T ss_dssp ----SC--------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHH
T ss_pred ----CC--------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHH
Confidence 11 788999999999999999999999999999864
No 50
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.39 E-value=5.5e-12 Score=123.99 Aligned_cols=108 Identities=15% Similarity=0.232 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCC
Q 008660 414 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSS 490 (558)
Q Consensus 414 ~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~ 490 (558)
..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++|||..+. .+.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~--~~~-- 130 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EEG-- 130 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTT--STT--
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHh--CCC--
Confidence 458999999999999999999999999999999999999999999754 333 4457799999999998663 121
Q ss_pred CCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 491 SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 491 ~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+++.++++|.++|+++.|++++|.++++++|++..
T Consensus 131 -----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~ 165 (260)
T 3kcc_A 131 -----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 165 (260)
T ss_dssp -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred -----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHH
Confidence 12788999999999999999999999999999864
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.39 E-value=1.7e-12 Score=136.67 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=102.9
Q ss_pred HHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---------CceEEEEEecC
Q 008660 403 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---------SKLIGLKRQED 473 (558)
Q Consensus 403 ~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~---------~~~~~~~~l~~ 473 (558)
+..+++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++... +....+..+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 345677889999999999999999999999999999999999999999999999997642 22335779999
Q ss_pred CCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhh
Q 008660 474 GNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 531 (558)
Q Consensus 474 G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~ 531 (558)
|++|||.++. ... +|.++++|.++|+++.|++++|.+++..+|++..+
T Consensus 345 G~~fGE~all---~~~-------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 345 GQYFGELALV---TNK-------PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp TCEESGGGGT---CCS-------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred CCEecHHHHh---CCC-------CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 9999999773 222 28999999999999999999999999999998643
No 52
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.37 E-value=3.3e-12 Score=121.53 Aligned_cols=112 Identities=13% Similarity=0.218 Sum_probs=89.5
Q ss_pred CcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhh
Q 008660 410 MQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAE 486 (558)
Q Consensus 410 i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l 486 (558)
-|.|...++.....+...++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+..+. .
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~--~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIF--S 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTT--S
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHh--c
Confidence 3677888888999999999999999999999999999999999999999654 334 4456799999999998663 1
Q ss_pred ccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 487 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 487 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
+. +++..+++|.++|+++.+++++|.++++++|++..
T Consensus 82 ~~-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 118 (213)
T 1o5l_A 82 SE-------PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLL 118 (213)
T ss_dssp SS-------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CC-------CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHH
Confidence 21 12788999999999999999999999999999853
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.34 E-value=3.9e-12 Score=141.66 Aligned_cols=135 Identities=11% Similarity=0.130 Sum_probs=111.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCe-eEEeCCCCEEEccCCccceEEEEEEeEEEEEEc
Q 008660 384 DSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLK-PVFFSERTTIISEGESIHEMLFVLEGQISIYSK 462 (558)
Q Consensus 384 ~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~-~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~ 462 (558)
..++... +..|.+-..+...+.++++++|.+++++.++.++..++ .+.|.+|++|+++||.++.+|||.+|.|++...
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 3445433 33454444444567899999999999999999999998 789999999999999999999999999998775
Q ss_pred CceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEec-eEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 463 SKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT-NVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 463 ~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
++ ..+..+++|++|||.++. .+.+ +.++++|.+ +|+++.|++++|.++++++|++..
T Consensus 91 g~-~il~~l~~Gd~fGe~al~--~~~~--------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 91 GK-GVVCTLHEGDDFGKLALV--NDAP--------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp TT-EEEEEEETTCEECHHHHH--HTCB--------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred CC-EEEEEeCCCCEeehHHHh--CCCC--------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 44 367899999999998663 2322 789999999 599999999999999999999843
No 54
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.31 E-value=1e-11 Score=121.18 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=95.3
Q ss_pred hcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhh
Q 008660 407 LGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIID 483 (558)
Q Consensus 407 l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~ 483 (558)
+.++..+..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+ .+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l- 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LY- 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CS-
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ec-
Confidence 4444445889999999999999999999999999999999999999999999654 333 445679999999999 43
Q ss_pred hhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 484 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
... +.++++|.++|+++.+++++|.++++++|++..
T Consensus 89 ---~~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (250)
T 3e6c_C 89 ---PTG--------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIF 124 (250)
T ss_dssp ---CCS--------CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHH
T ss_pred ---CCC--------CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHH
Confidence 221 678899999999999999999999999999864
No 55
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.30 E-value=1.7e-11 Score=104.42 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTR 339 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~ 339 (558)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++....
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999999999966543
No 56
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.27 E-value=1.8e-12 Score=108.46 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
.|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.+|.+++...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999996544
No 57
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.23 E-value=1.2e-10 Score=113.13 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCe---eEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCC
Q 008660 418 DYSLDHLCGCLK---PVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSS 491 (558)
Q Consensus 418 ~~~l~~L~~~l~---~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~ 491 (558)
+++++.|+.... .+.|.+||+|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||+.++. ... +
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~---~~~-~ 105 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLL---TGN-K 105 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHH---SSC-C
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHh---CCC-C
Confidence 678888888888 99999999999999999999999999999654 333 4456799999999998663 321 0
Q ss_pred CCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 492 HGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 492 ~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
..+..+++|.++|+++.+++++|.++++++|++..
T Consensus 106 ----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 140 (243)
T 3la7_A 106 ----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSM 140 (243)
T ss_dssp ----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred ----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHH
Confidence 01457899999999999999999999999999864
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=5.6e-11 Score=138.63 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=99.1
Q ss_pred HHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEe-CCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008660 402 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFF-SERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE 480 (558)
Q Consensus 402 l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y-~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~ 480 (558)
...+.+.++|.|++++...++.|+..+....+ ..|++|+++||.++.+|||.+|.|+|...+.. .+..+++|++|||.
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~-~v~~L~~Gd~FGEl 412 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKL 412 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGG
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc-ceEEecCCCcccch
Confidence 34577889999999999999999999997665 67999999999999999999999998764433 57899999999999
Q ss_pred hhhhhhccCCCCCCCCccccEEEEece-EEEEEEcHHHHHHHHHHhHh
Q 008660 481 IIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRR 527 (558)
Q Consensus 481 ~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~p~ 527 (558)
++. ... +|.+|++|.++ |++++++++||.+++.+-.+
T Consensus 413 ALL---~~~-------PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~ 450 (999)
T 4f7z_A 413 ALV---NDA-------PRAASIVLREDNCHFLRVDKEDGNRILRDVEA 450 (999)
T ss_dssp GGT---CSC-------BCSSEEEESSSSEEEEEEEHHHHHHHHHHHHH
T ss_pred hhc---cCC-------CeeEEEEEecCceEEEEeeHHHHHHHHhHHHH
Confidence 883 332 39999999985 99999999999999987654
No 59
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.21 E-value=1.3e-10 Score=95.88 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++..+
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677999999999999999999999999999999999999999999999986543
No 60
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.20 E-value=2.7e-10 Score=110.17 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHh--cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhcc
Q 008660 414 ENWEDYSLDHLCG--CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQ 488 (558)
Q Consensus 414 ~~~~~~~l~~L~~--~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~ 488 (558)
++++++.+++++. ..+.+.|.+|++|+++||.++.+|||.+|.|++.. .+| ...+..+ +|++|||..+. ..
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~---~~ 77 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFI---DT 77 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCT---TT
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhh---cC
Confidence 3578888888884 59999999999999999999999999999999654 344 3345577 99999998663 22
Q ss_pred CCCCCCCCc-cccEEEEe-ceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660 489 SSSHGHLPI-STRTIIAH-TNVEGFTLKTDELKHGIALHRRFNQ 530 (558)
Q Consensus 489 ~~~~~~~~~-r~~tv~A~-~~~~l~~L~~~~f~~ll~~~p~~~~ 530 (558)
. +. +..++.|. ++|+++.+++++|.++++++|++..
T Consensus 78 ~------~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (238)
T 2bgc_A 78 E------TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFF 115 (238)
T ss_dssp C------CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred C------CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHH
Confidence 1 10 14667777 5999999999999999999999864
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.10 E-value=1.5e-10 Score=92.34 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE 336 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 336 (558)
|..|+||+++|+||+||||++|.|..+++++++.+++|..++++.++.+++.
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999998854
No 62
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.02 E-value=8.4e-10 Score=109.94 Aligned_cols=56 Identities=7% Similarity=-0.111 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhhhhcccccC-CCC-CCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 282 PKKLLRCLHWGLQKLSAFGQD-LET-SDDVGE----NIFAIWMTIYGVVLFVFLIGRMQSET 337 (558)
Q Consensus 282 ~~~Y~~slYwa~~T~ttvGyG-di~-p~t~~E----~~~~i~~mi~G~~~fa~iig~i~s~~ 337 (558)
++.+..|+||++.|+||+||| |+. |.+..- ..+.+++++.|.++.+..+|.+.+..
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f 239 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAM 239 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677999999999999999 985 765543 78889999999999999999988543
No 63
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.01 E-value=6.9e-11 Score=107.78 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 335 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 335 (558)
.|..|+||+++|+|||||||++|.|..+++++++.+++|.+++|+++|.+++
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~ 118 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 118 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999994
No 64
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.98 E-value=3.5e-09 Score=98.91 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=66.7
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEece
Q 008660 431 VFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 507 (558)
Q Consensus 431 ~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 507 (558)
+.|.+|++|+++||.++.+|||.+|.|++.. .+ +...+..+++|++||| ++. ... ++.++++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~---~~~-------~~~~~~~A~~~ 70 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EAL---EGK-------AYRYTAEAMTE 70 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGG---TCS-------BCSSEEEESSS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhh---CCC-------CceeEEEECCc
Confidence 5799999999999999999999999999754 33 3445779999999999 773 322 27899999999
Q ss_pred EEEEEEcHHHHH
Q 008660 508 VEGFTLKTDELK 519 (558)
Q Consensus 508 ~~l~~L~~~~f~ 519 (558)
|+++.+++++|.
T Consensus 71 ~~v~~i~~~~~~ 82 (195)
T 3b02_A 71 AVVQGLEPRAMD 82 (195)
T ss_dssp EEEEEECGGGCC
T ss_pred EEEEEEcHHHcC
Confidence 999999999998
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.89 E-value=4e-09 Score=105.00 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
.|..|+|||+.|+|||||||++|.+...++++++.+++|.+++|+.+|.+.+..+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999998776543
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.86 E-value=2.8e-09 Score=107.33 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
.|..|+||++.|+|||||||++|.|..+++++++.+++|.+++|+++|.+.+..+
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~ 150 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999986554
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.86 E-value=6.9e-09 Score=102.91 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTF 362 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~~ 362 (558)
.|..|+||+++|+|||||||++|.|...++|+++.+++|..+++++++.+++...+. ++..+..+++.+.+++.++.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~--~~~~i~~le~~~~~~~~~~~ 191 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS--LRHGIGHIEAIFLKWHVPPE 191 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHHTTTC--CC
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHhccccchh
Confidence 689999999999999999999999999999999999999999999999999655432 22233444555555555443
No 68
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.83 E-value=1.3e-08 Score=95.43 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=66.9
Q ss_pred HHhcCeeEEeCCCCEEEccCCcc--ceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCcc
Q 008660 424 LCGCLKPVFFSERTTIISEGESI--HEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS 498 (558)
Q Consensus 424 L~~~l~~~~y~~ge~I~~~G~~~--~~myfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r 498 (558)
|...++.+.|.+|++|+++||.+ +.+|||.+|.|.+.. .+| ...+..+++|++||+ .+. .+.+ +
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l--~~~~--------~ 69 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EAL--FGQE--------R 69 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHH--HTCC--------B
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhc--CCCC--------c
Confidence 35678899999999999999999 999999999999654 333 445679999999999 553 2322 7
Q ss_pred ccEEEEeceEEEEEEcHHHHH
Q 008660 499 TRTIIAHTNVEGFTLKTDELK 519 (558)
Q Consensus 499 ~~tv~A~~~~~l~~L~~~~f~ 519 (558)
..+++|.++|+++.+ +++|.
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC
T ss_pred ceEEEEcccEEEEEE-hHhcC
Confidence 889999999999999 98886
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.68 E-value=2.1e-08 Score=100.65 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
.|..|+|||+.|||||||||+.|.+...++++++.+++|.+++|+++|.+.+..+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999986554
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.54 E-value=2.5e-07 Score=101.09 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGR 332 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~ 332 (558)
|..|+||+++|+|||||||++|.|..+++++++++++|..++++.++.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999999999999999999998
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=92.69 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 335 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 335 (558)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.++.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~ 144 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ 144 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999874
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.50 E-value=4.9e-07 Score=90.76 Aligned_cols=54 Identities=11% Similarity=0.275 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhcccccCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSD--DVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~--t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
+..++|||+.|+|||||||+.|. +..-++++.+.+++|.++.|+.+|.+.+-.+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~s 147 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKIS 147 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999999996 5788899999999999999999998876544
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.39 E-value=3.4e-07 Score=89.46 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGE-------NIFAIWMTIYGVVLFVFLIGRMQSE 336 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E-------~~~~i~~mi~G~~~fa~iig~i~s~ 336 (558)
|+.|+||++.|+|||||||++|.+... ++++++.+++|..+++++++.+++.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~ 260 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCEL 260 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999988854 9999999999999999999999854
No 74
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.37 E-value=2.9e-07 Score=91.29 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhhcccccCCCCCCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 285 LLRCLHWGLQKLSAFGQDLETSDDVGEN------IFAIWMTIYGVVLFVFLIGRMQSET 337 (558)
Q Consensus 285 Y~~slYwa~~T~ttvGyGdi~p~t~~E~------~~~i~~mi~G~~~fa~iig~i~s~~ 337 (558)
|+.|+||+++|+|||||||++|.+...+ +++++.+++|..+++++++.+++..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999887 5999999999999999999988653
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.33 E-value=2.3e-06 Score=86.01 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhcccccCCCCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETS--DDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p--~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
.+..++|||+.|+|||||||+.| .+..-++++.+.+++|.++.|..+|-+.+-.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46779999999999999999986 47889999999999999999999998775444
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.19 E-value=1.5e-07 Score=95.91 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 286 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE 336 (558)
Q Consensus 286 ~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 336 (558)
..|+||+++|+||+||||++|.|..+++++++.+++|..+++++++.+++.
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 97 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF 97 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999999999999999999999999999843
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.76 E-value=0.00023 Score=67.85 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhh
Q 008660 25 IENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELRE 88 (558)
Q Consensus 25 ~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t 88 (558)
.+|.++.++++.+.+..-+.- .+ .+......+..+|.++-++|.+|+++++..
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-----~~------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~ 65 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-----YE------LDPLFLETIHLLDYGITIFFVIEILIRFIG 65 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-----SS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHcc-----CC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655433210 00 111122346788999999999999999864
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=94.96 E-value=0.0095 Score=51.39 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=34.5
Q ss_pred eeehhhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhhhccccccCCceecChhHHhhhhhhhhhhhhcccc
Q 008660 65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIP 138 (558)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~ 138 (558)
..+..+|.++-++|.+|.++++..+-- + .+++ + |=++|+++++|+.
T Consensus 37 ~~l~~~d~~~~~iFt~E~~lRl~~~~~-~------------~~y~--------------~-~niiDllailp~~ 82 (132)
T 1ors_C 37 VRLYLVDLILVIILWADYAYRAYKSGD-P------------AGYV--------------K-KTLYEIPALVPAG 82 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-T------------TTTT--------------T-TCGGGTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-H------------HHHH--------------H-HHHHHHHHHHHHH
Confidence 346789999999999999999986411 0 0111 5 7789999999974
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=94.83 E-value=0.013 Score=51.54 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=33.8
Q ss_pred eehhhHHHHHHHHHHHHHHhhhhceeccchhhhhhhhhhhccccccCCceecChhHHhhhhhhhhhhhhcccc
Q 008660 66 TATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIP 138 (558)
Q Consensus 66 ~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~iDlls~lP~~ 138 (558)
.+..+|.++-++|.+|.++++..+-- +++=.++ =++|++|++|+.
T Consensus 53 ~~~~id~~~~~iF~~Ey~lRl~~a~~---------------------------k~~f~~~-~iiDllailP~~ 97 (147)
T 2kyh_A 53 RLYLVDLILVIILWADYAYRAYKSGD---------------------------PAGYVKK-TLYEIPALVPAG 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------HHHHHHH-STTTHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCc---------------------------HHHHHHH-HHHHHHHHHHHH
Confidence 46789999999999999999987421 1111233 578999999975
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=76.31 E-value=14 Score=30.03 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=47.4
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEece
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 507 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 507 (558)
+....+.||..+-.--...+++++|++|++++..+++ ...+++|+.+= +... ...++++.++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~---~~~l~~Gd~i~-------ip~~--------~~H~~~~~~~ 99 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA---QRRLHQGDLLY-------LGAG--------AAHDVNAITN 99 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE---EEEECTTEEEE-------ECTT--------CCEEEEESSS
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE---EEEECCCCEEE-------ECCC--------CcEEEEeCCC
Confidence 4455688888876655566799999999999877554 46899998863 2322 4556778887
Q ss_pred EEEEE
Q 008660 508 VEGFT 512 (558)
Q Consensus 508 ~~l~~ 512 (558)
++++.
T Consensus 100 ~~~~~ 104 (114)
T 3fjs_A 100 TSLLV 104 (114)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 76554
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=72.42 E-value=19 Score=28.78 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=42.4
Q ss_pred EeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEE
Q 008660 432 FFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGF 511 (558)
Q Consensus 432 ~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~ 511 (558)
.+.||..+-.......++++|++|++++..++. ...+++|+.+= +++. ....+++.+++.++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~---~~~l~~Gd~i~-------i~~~--------~~H~~~~~~~~~~~ 105 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDDQ---KIDLVPEDVLM-------VPAH--------KIHAIAGKGRFKML 105 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE---EEEECTTCEEE-------ECTT--------CCBEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECCE---EEEecCCCEEE-------ECCC--------CcEEEEeCCCcEEE
Confidence 356776554444456789999999999776543 46899999862 2322 34456666777766
Q ss_pred EE
Q 008660 512 TL 513 (558)
Q Consensus 512 ~L 513 (558)
.+
T Consensus 106 ~i 107 (114)
T 2ozj_A 106 QI 107 (114)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=71.21 E-value=19 Score=33.30 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=53.3
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEec
Q 008660 427 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 506 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 506 (558)
.+....+.||+.+=..--+.+++.+|++|++++...+. ...+++|+++= +... ....++|.+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~---~~~l~~Gd~~~-------~p~~--------~~H~~~a~~ 99 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENN---KKTISNGDFLE-------ITAN--------HNYSIEARD 99 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSC---EEEEETTEEEE-------ECSS--------CCEEEEESS
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCE---EEEECCCCEEE-------ECCC--------CCEEEEECC
Confidence 34556689999998877788999999999999877544 36899998862 2222 466789999
Q ss_pred eEEEEEE
Q 008660 507 NVEGFTL 513 (558)
Q Consensus 507 ~~~l~~L 513 (558)
++.++.+
T Consensus 100 ~~~~l~i 106 (227)
T 3rns_A 100 NLKLIEI 106 (227)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 9999977
No 83
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=69.10 E-value=31 Score=27.41 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=45.4
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEece
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 507 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 507 (558)
+....+.||..+-.--....++++|.+|.+.+..+++ ...+++|+.+= +.+. ....+++.++
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 103 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE---TYRVAEGQTIV-------MPAG--------IPHALYAVEA 103 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE---EEEEETTCEEE-------ECTT--------SCEEEEESSC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE---EEEECCCCEEE-------ECCC--------CCEEEEECCC
Confidence 3445677887764433346789999999999876543 36899999863 1222 3455677777
Q ss_pred EEEEEE
Q 008660 508 VEGFTL 513 (558)
Q Consensus 508 ~~l~~L 513 (558)
++++.+
T Consensus 104 ~~~~~v 109 (115)
T 1yhf_A 104 FQMLLV 109 (115)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 777664
No 84
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=63.66 E-value=46 Score=26.88 Aligned_cols=78 Identities=9% Similarity=0.022 Sum_probs=49.3
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEece
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 507 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 507 (558)
+....+.||..+-.--....++++|++|++++..+++ ...+++|+.+= +... ....+++.+.
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 104 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE---TRVLRPGMAYT-------IPGG--------VRHRARTFED 104 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE---EEEECTTEEEE-------ECTT--------CCEEEECCTT
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE---EEEeCCCCEEE-------ECCC--------CcEEeEECCC
Confidence 4455678888775444446789999999999877553 46899998862 1221 3344555555
Q ss_pred -EEEEE---EcHHHHHHHHH
Q 008660 508 -VEGFT---LKTDELKHGIA 523 (558)
Q Consensus 508 -~~l~~---L~~~~f~~ll~ 523 (558)
+.++. -.++|+.+.++
T Consensus 105 ~~~~l~v~~p~~~d~~~~~~ 124 (126)
T 4e2g_A 105 GCLVLDIFSPPREDYARMAE 124 (126)
T ss_dssp CEEEEEEEESCCHHHHHHHH
T ss_pred CEEEEEEECCCCcchhhhhc
Confidence 55443 34566665554
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=62.85 E-value=42 Score=26.63 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=45.1
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEece
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 507 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 507 (558)
+....+.||..+-.--....++++|++|.+++..+++ ...+.+|+.+= +.+. ....+++.++
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 97 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV---IKVLTAGDSFF-------VPPH--------VDHGAVCPTG 97 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE---EEEECTTCEEE-------ECTT--------CCEEEEESSC
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE---EEEeCCCCEEE-------ECcC--------CceeeEeCCC
Confidence 3445577887653333346789999999999776443 46899999862 1222 3455777777
Q ss_pred EEEEEE
Q 008660 508 VEGFTL 513 (558)
Q Consensus 508 ~~l~~L 513 (558)
++++.+
T Consensus 98 ~~~l~v 103 (116)
T 2pfw_A 98 GILIDT 103 (116)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777766
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=58.73 E-value=26 Score=28.77 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=32.6
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 430 PVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 430 ~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
...+.||..+-.. ...+++++|++|++++..+ +. ...+++||.+
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~-g~--~~~l~~GD~v 87 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTD-GE--TVTAGPGEIV 87 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEET-TE--EEEECTTCEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEEC-CE--EEEECCCCEE
Confidence 3456788765443 3678999999999998764 43 4689999987
No 87
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=54.26 E-value=27 Score=27.47 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=34.3
Q ss_pred CeeEEeCCCCEEEcc--CCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISE--GES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~--G~~-~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||..+-.. -.. ..++++|++|++++..+++ ...+++|+.+
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH---TQALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE---EEEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 344567888877544 333 6789999999999876543 4688999876
No 88
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=52.69 E-value=31 Score=26.53 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=33.1
Q ss_pred CeeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~-~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||..+-.--.. .+++++|++|++.+..+++ ...+++|+.+
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~---~~~l~~Gd~~ 77 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE---EALLAPGMAA 77 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 344567888876433323 3579999999999876543 4689999886
No 89
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=50.13 E-value=39 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=36.1
Q ss_pred ceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcH
Q 008660 447 HEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKT 515 (558)
Q Consensus 447 ~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~ 515 (558)
.+++++.+|.+.+..+++ ...+++|+.+= +.+. ......+.+++.++.++.
T Consensus 51 ~e~~~v~~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQ---NITLQAGEMYV-------IPKG--------VEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEECSSC---EEEEETTEEEE-------ECTT--------CCBEEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECCE---EEEEcCCCEEE-------ECCC--------CeEeeEcCCCCEEEEEEc
Confidence 789999999999776554 35788998762 2322 345566678888887753
No 90
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=49.62 E-value=25 Score=28.59 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=33.9
Q ss_pred cCeeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 427 CLKPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~-~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
.+....+.||..+-..-.. ..++++|++|++++...++. ...+++|+.+
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~--~~~l~~Gd~~ 89 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGI--VTHLKAGDIA 89 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTC--EEEEETTEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCe--EEEeCCCCEE
Confidence 3445667888876544344 36899999999998763442 4688999876
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=48.71 E-value=69 Score=29.35 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=48.8
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEE-e
Q 008660 427 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIA-H 505 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A-~ 505 (558)
.+....+.||+.+-..-...+++++|++|++++..+++ ...+++|+.+= +... ....++| .
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~---~~~l~~Gd~i~-------ip~~--------~~H~~~~~~ 215 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK---PFIVKKGESAV-------LPAN--------IPHAVEAET 215 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE---EEEEETTEEEE-------ECTT--------SCEEEECCS
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE---EEEECCCCEEE-------ECCC--------CcEEEEeCC
Confidence 34566789999886555556789999999999876543 46899998862 1222 3456777 7
Q ss_pred ceEEEEEE
Q 008660 506 TNVEGFTL 513 (558)
Q Consensus 506 ~~~~l~~L 513 (558)
++++++..
T Consensus 216 ~~~~~ll~ 223 (227)
T 3rns_A 216 ENFKMLLI 223 (227)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 87776643
No 92
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=47.61 E-value=23 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=25.5
Q ss_pred ccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008660 445 SIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 477 (558)
Q Consensus 445 ~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~f 477 (558)
..++++++++|.+.+.. ++|......+++|+.|
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f 87 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIF 87 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEE
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEE
Confidence 35799999999999655 3353456799999998
No 93
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=47.46 E-value=18 Score=29.84 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=32.2
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 433 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 433 y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
..||..-.... ..++++.|++|++.+..++|. ...+++||.+-
T Consensus 49 ~tPG~~~~~~~-~~~E~~~iLeG~~~lt~ddG~--~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAGR-DLEETFVVVEGEALYSQADAD--PVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECCC-SEEEEEEEEECCEEEEETTCC--CEEECTTEEEE
T ss_pred cCCceeECeeC-CCcEEEEEEEeEEEEEeCCCe--EEEECCCCEEE
Confidence 45665555443 345899999999999887774 57999999874
No 94
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=47.32 E-value=16 Score=30.31 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=30.9
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 433 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 433 y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
..||..-....+ .+++++|++|++.+..++|. ...+++||.+-
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~--~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVDPDGT--VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEECTTCC--EEEEETTCEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEECCCe--EEEECCCCEEE
Confidence 456655544332 38999999999998875553 46899999874
No 95
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=44.42 E-value=18 Score=28.10 Aligned_cols=49 Identities=8% Similarity=-0.056 Sum_probs=32.7
Q ss_pred eeEEeCCCCEEEccCCcc-ceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 429 KPVFFSERTTIISEGESI-HEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~-~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
....+.||...-.--... +++++|++|++++...++. ....+.+|+.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~-~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGS-VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEE-EEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCC-EEEEEcCCCEEE
Confidence 345577887542222223 3599999999998876652 246899998873
No 96
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=43.84 E-value=29 Score=38.50 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008660 284 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 338 (558)
Q Consensus 284 ~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 338 (558)
....++++++.+++..| ++..|.+...+++.+++++++.++.+.-.+++++...
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578999999999888 5889999999999999999999999999999997654
No 97
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=42.16 E-value=1.2e+02 Score=23.73 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=34.2
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
.....+.||+.-.. ...+++++|++|++++..+++. ...+++|+.+
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~--~~~l~~GD~i 78 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGK--KYVIEKGDLV 78 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCC--EEEEETTCEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCC--EEEECCCCEE
Confidence 44566788876544 3467999999999998775343 4689999987
No 98
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=40.99 E-value=62 Score=27.45 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=38.8
Q ss_pred CCccceEEEEEEeEEEEEEcCc-----eEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHH
Q 008660 443 GESIHEMLFVLEGQISIYSKSK-----LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTD 516 (558)
Q Consensus 443 G~~~~~myfI~~G~v~v~~~~~-----~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~ 516 (558)
-+..|++|+|++|++.+..+++ ......+++|+++- -++ + -..+-+|.+.|.++.+...
T Consensus 47 H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv--------VPk---G----veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 47 HHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN--------VPA---E----CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp ESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE--------ECT---T----CEEEEEECTTCEEEEEEES
T ss_pred CCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE--------eCC---C----ccCcccCCCceEEEEEEeC
Confidence 3557899999999999654321 12246889998873 222 1 2445667788888877655
No 99
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.84 E-value=25 Score=31.15 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=37.0
Q ss_pred HHHHHHhcCee----EEeCCCCEEEcc-C----------CccceEEEEEEeEEEEEE-cCc----eEEEEEecCCCee
Q 008660 420 SLDHLCGCLKP----VFFSERTTIISE-G----------ESIHEMLFVLEGQISIYS-KSK----LIGLKRQEDGNYC 477 (558)
Q Consensus 420 ~l~~L~~~l~~----~~y~~ge~I~~~-G----------~~~~~myfI~~G~v~v~~-~~~----~~~~~~l~~G~~f 477 (558)
-+.+....++| +....+++++.. | +..++++++++|.+.+.. ++| ......+++|+.|
T Consensus 13 wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 13 WLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE
T ss_pred HHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE
Confidence 45555566666 443335655432 2 234689999999999654 324 3446799999988
No 100
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=39.64 E-value=1.1e+02 Score=25.52 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=30.4
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 431 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 431 ~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
..+.||..-.. ...+++++|++|++++..+ +. ...+++||.+-
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~-g~--~~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRHE-GE--TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEET-TE--EEEEETTCEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEEC-CE--EEEECCCcEEE
Confidence 34667743222 2367999999999998775 42 35899999873
No 101
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=39.53 E-value=40 Score=31.00 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=25.4
Q ss_pred CccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 444 ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 444 ~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
...+++|+|++|.+++..+++. ...+++|+.+
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~g~--~~~l~pGd~v 181 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRNAP--DLMLEPGQTR 181 (217)
T ss_dssp CSSEEEEEEEEECEEEEETTSC--CEEECTTCEE
T ss_pred CCCceEEEEEeCCEEEEECCCC--EEecCCCCEE
Confidence 4567999999999998776452 5689999886
No 102
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=38.03 E-value=48 Score=28.89 Aligned_cols=47 Identities=6% Similarity=0.049 Sum_probs=33.1
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||..+-..--...++++|++|++.+..+++ ...+++|+.+
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~---~~~l~~Gd~i 104 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR---VEPLTPLDCV 104 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE---EEEECCCCEE
Confidence 3445567776553333346789999999999876554 4688999886
No 103
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=37.73 E-value=44 Score=26.23 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=41.8
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEE
Q 008660 433 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFT 512 (558)
Q Consensus 433 y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~ 512 (558)
..||+.....-+..+++++|++|++++..+++. ...+++|+.+= +.+. ...+.++.+.+.++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~~~~l~ 97 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGG--SMTIREGEMAV-------VPKS--------VSHRPRSENGCSLVL 97 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETTSC--EEEECTTEEEE-------ECTT--------CCEEEEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECCCc--EEEECCCCEEE-------ECCC--------CcEeeEeCCCeEEEE
Confidence 345553323333237999999999998776622 36899998862 1222 334455567788888
Q ss_pred EcHHHH
Q 008660 513 LKTDEL 518 (558)
Q Consensus 513 L~~~~f 518 (558)
++....
T Consensus 98 i~~~~~ 103 (107)
T 2i45_A 98 IELSDP 103 (107)
T ss_dssp EECC--
T ss_pred EECCCc
Confidence 776544
No 104
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=37.60 E-value=52 Score=28.97 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=35.0
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCee
Q 008660 427 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYC 477 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~f 477 (558)
.+....+.||.....--..++++++|++|++++.- .++. ....+++||.+
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~ 93 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAI 93 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEE
Confidence 35556788988765443346799999999988533 3333 46689999987
No 105
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.07 E-value=1.6e+02 Score=27.20 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEE
Q 008660 430 PVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVE 509 (558)
Q Consensus 430 ~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~ 509 (558)
...+.||...-..- .++.++|++|++++...+. ...+++|+++= +... ...+++..+.++
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~---~~~l~~Gd~~~-------~p~~--------~~H~~~n~~~~~ 113 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE---TRTLREYDYVY-------LPAG--------EKHMLTAKTDAR 113 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC---EEEECTTEEEE-------ECTT--------CCCEEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE---EEEECCCCEEE-------ECCC--------CCEEEEeCCCEE
Confidence 44578887765443 7889999999999876544 46899999863 1222 233455446777
Q ss_pred EEEEc
Q 008660 510 GFTLK 514 (558)
Q Consensus 510 l~~L~ 514 (558)
++.+.
T Consensus 114 ~l~v~ 118 (246)
T 1sfn_A 114 VSVFE 118 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76653
No 106
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=36.62 E-value=33 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=33.6
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 427 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
.+....+.||...-.-.....+..+|++|++++...+++ ...+++|+.+
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge--~~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGA--KRTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGC--EEEECTTCEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCe--EEEECCCCEE
Confidence 344556778764332223345788999999998765443 4689999997
No 107
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=36.36 E-value=1.4e+02 Score=22.96 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=41.4
Q ss_pred eeEEeCCCCEEEccCCcc-ceE-EEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEec
Q 008660 429 KPVFFSERTTIISEGESI-HEM-LFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 506 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~-~~m-yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 506 (558)
....+.||..+-..-... .++ ++|++|++.+..+++. ...+++|+.+= +.+. ....+++.+
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~--~~~l~~Gd~~~-------ip~~--------~~H~~~~~~ 98 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDA--VIPAPRGAVLV-------APIS--------TPHGVRAVT 98 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGC--EEEECTTEEEE-------EETT--------SCEEEEESS
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCE--EEEECCCCEEE-------eCCC--------CcEEEEEcC
Confidence 334567887764332222 466 8999999998765332 35899998762 1222 344566667
Q ss_pred eEEEEEE
Q 008660 507 NVEGFTL 513 (558)
Q Consensus 507 ~~~l~~L 513 (558)
+++++.+
T Consensus 99 ~~~~l~~ 105 (110)
T 2q30_A 99 DMKVLVT 105 (110)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 6665543
No 108
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=36.20 E-value=56 Score=26.97 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=32.2
Q ss_pred eeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 429 KPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~-~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
....+.||..+-.---. ..++++|++|++++..++. ...+++|+.+
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE---EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE---EEEeCCCcEE
Confidence 34567888766432222 3689999999999876543 4688999886
No 109
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=34.23 E-value=41 Score=29.57 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=30.0
Q ss_pred EEeCC-CCE-EEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 431 VFFSE-RTT-IISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 431 ~~y~~-ge~-I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
..+.| |.. =-.....+++++||++|++++.-.+. ...+++|+++=
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~---~~~L~~Gds~~ 139 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKN---KFLSVKGSTFQ 139 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTE---EEEEETTCEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCE---EEEEcCCCEEE
Confidence 34667 431 11122346789999999999877543 45899999873
No 110
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=33.99 E-value=63 Score=26.10 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=46.8
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEe--c
Q 008660 429 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAH--T 506 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~--~ 506 (558)
....+.||...-.--....++++|.+|++.+..+++ ...+++|+.+= +.+. ......+. +
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~---~~~l~~Gd~~~-------i~~~--------~~H~~~~~~~~ 98 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE---DFPVTKGDLII-------IPLD--------SEHHVINNNQE 98 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE---EEEEETTCEEE-------ECTT--------CCEEEEECSSS
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE---EEEECCCcEEE-------ECCC--------CcEEeEeCCCC
Confidence 334566766433222345689999999999877554 46889998862 1221 22334443 3
Q ss_pred eEEE--EEEcHHHHHHHHHHhHh
Q 008660 507 NVEG--FTLKTDELKHGIALHRR 527 (558)
Q Consensus 507 ~~~l--~~L~~~~f~~ll~~~p~ 527 (558)
.++. +.++.+-+..+..+-+.
T Consensus 99 ~~~~~~i~f~~~~~~~~~~~~~~ 121 (128)
T 4i4a_A 99 DFHFYTIWWDKESTLNFLTRLEQ 121 (128)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEEEEECHHHHHHHHHhccc
Confidence 3444 44566666665555443
No 111
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=33.87 E-value=42 Score=26.92 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.8
Q ss_pred CccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 444 ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 444 ~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
...+++++|++|++++..+++. ....+++|+.+
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~-~~~~l~~Gd~i 83 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT-APRVMRPGDWL 83 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS-SCEEECTTEEE
T ss_pred CCccEEEEEEeCeEEEEECCEE-EEEEECCCCEE
Confidence 3566899999999998775543 01579999886
No 112
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=33.69 E-value=78 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=32.4
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 429 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
....+.||..+-.---...++++|++|++.+..+++. ...+.+|+.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~i 97 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKP--ARILKKGDVV 97 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSC--CEEEETTCEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECCEE--EEEECCCCEE
Confidence 3455777776633223346899999999998775542 2578999886
No 113
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=32.75 E-value=41 Score=29.13 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=32.1
Q ss_pred CeeEEeCCCCEEE--ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTII--SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~--~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||.... ..-+..+++++|++|++++...++ ...+++|+.+
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~---~~~l~~GD~i 93 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG---EHPMVPGDCA 93 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE---EEEeCCCCEE
Confidence 3445677877542 112223699999999999877554 4689999886
No 114
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=32.61 E-value=46 Score=28.72 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=29.9
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 431 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+.||...-..-....++++|++|++++..+++ ...+++|+.+
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE---EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 3455665443322345689999999999876543 4688999886
No 115
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=31.74 E-value=64 Score=30.03 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=37.3
Q ss_pred hcCeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 426 GCLKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 426 ~~l~~~~y~~ge~I~~-~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
..+....+.||..+-. .-...++.++|++|+..+..++. ...+++||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~---~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN---YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE---EEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCE---EEEcCCCCEEE
Confidence 3456677899987764 33456789999999999776443 46899999863
No 116
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=31.56 E-value=50 Score=26.96 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=30.0
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 431 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+.||...-.--....++++|++|++++..+++ ...+.+|+.+
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~---~~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG---EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC---EEEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEECCE---EEEECCCCEE
Confidence 3456665543323336789999999999776544 3578898876
No 117
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=31.41 E-value=84 Score=30.00 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=38.2
Q ss_pred CccceEEEEEEeEEEEEE-cCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHH
Q 008660 444 ESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTD 516 (558)
Q Consensus 444 ~~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~ 516 (558)
+..+++|++++|.+.+.- ++|...-..+++|++|= +... -.++-+|...|..+.+.+.
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfl-------lP~g--------v~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFL-------LPAR--------VPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEE-------ECTT--------CCEEEEECTTCEEEEEEEC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEE-------eCCC--------CCcCCcccCCeEEEEEeec
Confidence 346799999999999644 33645567999999872 1221 2334455667777777643
No 118
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=31.35 E-value=43 Score=29.24 Aligned_cols=45 Identities=7% Similarity=-0.057 Sum_probs=30.6
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 430 PVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 430 ~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
...+.||..+-.--....++++|++|++++..+++ ...+++|+.+
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE---EEEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 33456665543333345689999999999876543 4689999986
No 119
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=31.23 E-value=2e+02 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=24.1
Q ss_pred ccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 445 SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 445 ~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+++++|++|++++.. +|. ...+++||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~--~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGR--KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTE--EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE-CCE--EEEEcCCCEE
Confidence 35689999999999876 443 5789999987
No 120
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=30.91 E-value=94 Score=27.31 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=31.5
Q ss_pred EEeCCCCEEEcc--CCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 431 VFFSERTTIISE--GESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y~~ge~I~~~--G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+.||...-.. .....++++|++|++++...+. ...+++|+.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~---~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ---WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE---EEEeCCCCEE
Confidence 456788766521 2334699999999999876543 4689999986
No 121
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=30.90 E-value=1.3e+02 Score=26.52 Aligned_cols=47 Identities=26% Similarity=0.171 Sum_probs=31.2
Q ss_pred EEeCCCCEEEc---cCCccceEEEEEEeEEEEEEcCc-eEEEEEecCCCee
Q 008660 431 VFFSERTTIIS---EGESIHEMLFVLEGQISIYSKSK-LIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y~~ge~I~~---~G~~~~~myfI~~G~v~v~~~~~-~~~~~~l~~G~~f 477 (558)
..+.||...-. -...++++++|++|++++...++ ......+++|+.+
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~ 172 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASM 172 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEE
Confidence 34677765431 22344789999999999776541 1124689999987
No 122
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=30.04 E-value=1e+02 Score=29.24 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=44.2
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceE
Q 008660 429 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNV 508 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~ 508 (558)
-...+.||..--.....++++.||++|++++..++++ ...+++|+++= +... ...+++..+.+
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~--~~~L~~Gds~y-------~p~~--------~~H~~~N~~~A 135 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSS--SKKLTVDSYAY-------LPPN--------FHHSLDCVESA 135 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CC--CEEECTTEEEE-------ECTT--------CCCEEEESSCE
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCc--EEEEcCCCEEE-------ECCC--------CCEEEEeCCCE
Confidence 3445788876322234467999999999998765232 35899998862 1221 33445556778
Q ss_pred EEEEEcH
Q 008660 509 EGFTLKT 515 (558)
Q Consensus 509 ~l~~L~~ 515 (558)
+++.+.+
T Consensus 136 r~l~V~k 142 (266)
T 4e2q_A 136 TLVVFER 142 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8877743
No 123
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=28.89 E-value=86 Score=29.00 Aligned_cols=47 Identities=6% Similarity=0.067 Sum_probs=34.7
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCe
Q 008660 427 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNY 476 (558)
Q Consensus 427 ~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~ 476 (558)
.+....+.||..+-.---...++++|++|.+++..+++ ...+.+|+.
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~---~~~l~~Gd~ 81 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV---TRKMTALES 81 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE---EEEEETTTC
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE---EEEECCCCE
Confidence 34455688888776554557789999999999877543 468999984
No 124
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=28.54 E-value=75 Score=25.63 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=29.6
Q ss_pred eeEEeCCCCEEE--ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 429 KPVFFSERTTII--SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 429 ~~~~y~~ge~I~--~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
....+.||..+- ..-+..+.+|+|.+|++.+..++. ...+++|+.+
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~---~~~l~~Gd~i 76 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE---KIELQAGDWL 76 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE---EEEEETTEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 344567776542 122223457779999999776543 4688999886
No 125
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=28.44 E-value=45 Score=33.75 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=35.9
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 429 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
....+.||+.+-.--....++|||++|+-.....+|. ...+++||++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~--~~~~~~GD~i 172 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGH--KVELGANDFV 172 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTE--EEEECTTCEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCE--EEEEcCCCEE
Confidence 6678999998876655667899999998765444553 4688999987
No 126
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=27.78 E-value=96 Score=29.50 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=37.9
Q ss_pred hcCeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 426 GCLKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 426 ~~l~~~~y~~ge~I~~-~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+....+.||..|-. +-..-++.++|++|+..+..++. ...+++||++
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~---~~~v~~GD~~ 240 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD---WVEVEAGDFM 240 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE---EEEEETTCEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 5577788999999975 44444588999999999776443 5799999986
No 127
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=27.77 E-value=52 Score=26.20 Aligned_cols=45 Identities=9% Similarity=0.219 Sum_probs=29.1
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 431 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 431 ~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
..+.||...-.--....++++|++|.+.+..+++. ...+++|+.+
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~--~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQE--PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETTSC--CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEE--EEEeCCCCEE
Confidence 34556654322122356799999999998765542 2378999876
No 128
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.54 E-value=56 Score=28.02 Aligned_cols=50 Identities=14% Similarity=-0.044 Sum_probs=31.8
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCc------eEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSK------LIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~------~~~~~~l~~G~~f 477 (558)
+....+.||..+-.--....++++|++|++.+...++ ......+++|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 3344577776542222234679999999999766441 1124689999886
No 129
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=25.53 E-value=91 Score=28.23 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=11.8
Q ss_pred hHHHHHHHHhHHHhhhh
Q 008660 156 TFFVLQYLLRVIRTYFL 172 (558)
Q Consensus 156 ~~~~l~rl~Rl~r~~~l 172 (558)
..+|++|++|++|+.+.
T Consensus 100 r~lRllRllR~~r~~~~ 116 (223)
T 1orq_C 100 RLVRLLRFLRILLIISR 116 (223)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777777663
No 130
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=24.97 E-value=76 Score=27.04 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=32.3
Q ss_pred CeeEEeCCCCE-EE-ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTT-II-SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~-I~-~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||.. .- ..-...+++++|++|++++...++ ...+++|+.+
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND---QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE---EEEeCCCCEE
Confidence 34456788874 21 111246799999999999876553 4689999987
No 131
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=23.81 E-value=17 Score=28.63 Aligned_cols=50 Identities=8% Similarity=0.105 Sum_probs=33.5
Q ss_pred CeeEEeCCCCEEEccCCcc-ceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIISEGESI-HEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~-~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
++...+.||+.+--.--.. .+.|+|.+|++.+...++......+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEE
Confidence 4556788888776554433 4678888999998776654344567888764
No 132
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=23.32 E-value=1.8e+02 Score=25.93 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=33.9
Q ss_pred CeeEEeCCCCEEEccC-CccceEEEEEEeEEEEEEc-C----ceEEEEEecCCCeee
Q 008660 428 LKPVFFSERTTIISEG-ESIHEMLFVLEGQISIYSK-S----KLIGLKRQEDGNYCG 478 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G-~~~~~myfI~~G~v~v~~~-~----~~~~~~~l~~G~~fG 478 (558)
+....+.||...-.-- ..++++++|++|++++... + +......+++|+.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 4456788888653322 2257999999999996442 2 332256899999873
No 133
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=23.25 E-value=63 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHh
Q 008660 346 KLRQIKHWKHFKDIST-----FVRAKIREAKRENL 375 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp~-----~L~~rv~~y~~~~~ 375 (558)
+..+++++++.+++|. +|..||..|++..-
T Consensus 41 tVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 41 KVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp CHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 4678999999999994 79999999998644
No 134
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.22 E-value=1.1e+02 Score=28.87 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=34.5
Q ss_pred CeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 428 LKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 428 l~~~~y~~ge~I~~-~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
+....+.||..+-. .--..+++++|++|++++..++. ...+++||.+
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~---~~~l~~GD~i 231 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE---WYPVEKGDYI 231 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE---EEEEETTCEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE---EEEECCCCEE
Confidence 44556888887643 23356789999999999876543 4689999987
No 135
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.59 E-value=64 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 008660 346 KLRQIKHWKHFKDIS-----TFVRAKIREAKRE 373 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp-----~~L~~rv~~y~~~ 373 (558)
++.+++++++.+++| .+|..|+..|+.-
T Consensus 14 kV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 14 KLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 467889999999998 4799999998874
No 136
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=22.57 E-value=76 Score=29.60 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.0
Q ss_pred cceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008660 446 IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 478 (558)
Q Consensus 446 ~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fG 478 (558)
.+++..|++|++.+..++|. ...+++||.+-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~--~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGS--SLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTSC--EEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCCC--EEEECCCCEEE
Confidence 46899999999999887775 47899999874
No 137
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.47 E-value=75 Score=32.08 Aligned_cols=80 Identities=5% Similarity=-0.096 Sum_probs=53.4
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEE---
Q 008660 428 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIA--- 504 (558)
Q Consensus 428 l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A--- 504 (558)
+....+.||+..-.--...+++|+|++|+..+..+ | ....+++||+|=. ... .......
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~-g--e~~~~~~GD~~~i-------P~g--------~~H~~~N~g~ 357 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVG-G--KRFDWSEHDIFCV-------PAW--------TWHEHCNTQE 357 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEET-T--EEEEECTTCEEEE-------CTT--------CCEEEEECCS
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEEC-C--EEEEEeCCCEEEE-------CCC--------CeEEeEeCCC
Confidence 35667889988766555677899999999875543 4 2468999999732 111 2233333
Q ss_pred eceEEEEEEcHHHHHHHHHHh
Q 008660 505 HTNVEGFTLKTDELKHGIALH 525 (558)
Q Consensus 505 ~~~~~l~~L~~~~f~~ll~~~ 525 (558)
.+++.+++++...+.+-+.-+
T Consensus 358 ~e~~~ll~i~D~Pl~~~Lgl~ 378 (394)
T 3bu7_A 358 RDDACLFSFNDFPVMEKLGFW 378 (394)
T ss_dssp SCCEEEEEEESHHHHHHTTCC
T ss_pred CCCeEEEEeeCHHHHHHhhhh
Confidence 357888988877777655544
No 138
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=22.39 E-value=3.6e+02 Score=26.04 Aligned_cols=80 Identities=16% Similarity=0.009 Sum_probs=41.8
Q ss_pred hhhhhhhhhhh-ccccceeeeeeccCCCCcchhhHHHHHHHHhHHHhhhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 008660 124 WMLFFIDGLAI-LPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSG 202 (558)
Q Consensus 124 ~~~F~iDlls~-lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 202 (558)
..|.++|++++ +|+..+.. + +. ..++++|++|++|+.|..+.++.....+..+ ...+...++.++++.
T Consensus 72 ~~~~i~Dl~~i~~p~~~~~~----~---~~---~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~-~~~l~~~~~~~~~~~ 140 (355)
T 3beh_A 72 TPKIAIDVLAVLVPLAAFLL----D---GS---PDWSLYCAVWLLKPLRDSTFFPVLGRVLANE-ARNLIGVTTLFGVVL 140 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----C---CS---GGGGGGGGGGGSHHHHTCSSHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHh----c---cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 67899999999 69754321 1 11 1223333333333333332222222222211 123344445556679
Q ss_pred HHHHHHHHhhhh
Q 008660 203 HMFGALWYYYAI 214 (558)
Q Consensus 203 H~~aC~w~~i~~ 214 (558)
|+.||++|.+..
T Consensus 141 ~~~a~~~~~~e~ 152 (355)
T 3beh_A 141 FAVALAAYVIER 152 (355)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999998763
No 139
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=21.97 E-value=1.3e+02 Score=25.17 Aligned_cols=48 Identities=15% Similarity=-0.062 Sum_probs=30.3
Q ss_pred eEEeCCCCEEEccC-CccceEEEEEEeEEEEEEcCce---EEEEEecCCCee
Q 008660 430 PVFFSERTTIISEG-ESIHEMLFVLEGQISIYSKSKL---IGLKRQEDGNYC 477 (558)
Q Consensus 430 ~~~y~~ge~I~~~G-~~~~~myfI~~G~v~v~~~~~~---~~~~~l~~G~~f 477 (558)
...+.||..+-.-- ...+++++|++|.+.+...++. .....+.+|+.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 34567776543222 2245899999999997664432 011578999875
No 140
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=21.79 E-value=1.2e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.7
Q ss_pred ceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008660 447 HEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 477 (558)
Q Consensus 447 ~~myfI~~G~v~v~~~~~~~~~~~l~~G~~f 477 (558)
.++++|++|.+.+..+++. ...+++|+.+
T Consensus 65 ~E~~~vl~G~~~~~~~~~~--~~~l~~Gd~~ 93 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDIG--AVMLEAGGSA 93 (134)
T ss_dssp CEEEEEEESEEEEEETTTE--EEEEETTCEE
T ss_pred cEEEEEEeCEEEEEECCcE--EEEecCCCEE
Confidence 7899999999998776632 4689999886
No 141
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.61 E-value=88 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 008660 346 KLRQIKHWKHFKDIS-----TFVRAKIREAKRE 373 (558)
Q Consensus 346 ~~~~i~~~m~~~~lp-----~~L~~rv~~y~~~ 373 (558)
++.++++.++.+++| .+|.+|++.|.+-
T Consensus 30 kVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 30 KVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 467899999999999 4799999998764
No 142
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=21.18 E-value=1.8e+02 Score=28.94 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=57.5
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceE
Q 008660 429 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNV 508 (558)
Q Consensus 429 ~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~ 508 (558)
....+.||+..-.--..+..+|.|.+|.-.+.-++. ....++||.|-- ..- ...+..+.+++
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~---~~~w~~gD~fvv-------P~w--------~~h~~~n~~~a 343 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGE---TTKLEKGDMFVV-------PSW--------VPWSLQAETQF 343 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEETTE---EEEECTTCEEEE-------CTT--------CCEEEEESSSE
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEECCE---EEEecCCCEEEE-------CCC--------CcEEEEeCCCE
Confidence 345678888765555667789999999988665443 468999999842 211 34567788999
Q ss_pred EEEEEcHHHHHHHHHHhH
Q 008660 509 EGFTLKTDELKHGIALHR 526 (558)
Q Consensus 509 ~l~~L~~~~f~~ll~~~p 526 (558)
.++.++-.-+++-|.-|.
T Consensus 344 ~Lf~~~D~Pl~~~LGl~r 361 (368)
T 3nw4_A 344 DLFRFSDAPIMEALSFMR 361 (368)
T ss_dssp EEEEEESHHHHHHTTCCC
T ss_pred EEEEEeCHHHHHHhCCce
Confidence 999999888887665443
No 143
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=20.01 E-value=1.2e+02 Score=31.02 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=37.8
Q ss_pred hcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008660 426 GCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 477 (558)
Q Consensus 426 ~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~-~~~~~~~~~l~~G~~f 477 (558)
..+....+.||..+-.--..++++++|++|+..+.. ..+......+++||++
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 456677899998887765557799999999988533 1222246789999886
Done!