Query 008661
Match_columns 558
No_of_seqs 393 out of 2309
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 14:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028 Ca2+-dependent phospho 100.0 5.2E-40 1.1E-44 352.4 19.5 236 50-289 151-419 (421)
2 cd08677 C2A_Synaptotagmin-13 C 99.9 2.6E-23 5.7E-28 187.8 12.0 112 53-167 1-118 (118)
3 cd04016 C2_Tollip C2 domain pr 99.9 7.8E-22 1.7E-26 178.8 15.2 113 66-181 2-121 (121)
4 cd08393 C2A_SLP-1_2 C2 domain 99.9 4.4E-22 9.5E-27 179.9 12.0 116 53-168 2-125 (125)
5 cd08381 C2B_PI3K_class_II C2 d 99.9 7.7E-22 1.7E-26 177.9 12.4 114 52-168 1-122 (122)
6 cd04029 C2A_SLP-4_5 C2 domain 99.9 1.8E-21 3.9E-26 176.3 12.9 116 53-168 2-125 (125)
7 cd08682 C2_Rab11-FIP_classI C2 99.9 3.1E-21 6.8E-26 173.6 13.1 113 68-180 1-126 (126)
8 cd08387 C2A_Synaptotagmin-8 C2 99.9 3.8E-21 8.2E-26 172.2 13.1 117 52-168 2-123 (124)
9 cd08392 C2A_SLP-3 C2 domain fi 99.9 3.7E-21 8E-26 175.4 12.5 116 53-168 2-128 (128)
10 cd08680 C2_Kibra C2 domain fou 99.9 4.3E-21 9.3E-26 174.5 12.1 114 54-167 2-124 (124)
11 cd08376 C2B_MCTP_PRT C2 domain 99.9 1.3E-20 2.7E-25 166.6 14.5 114 67-182 1-115 (116)
12 cd04028 C2B_RIM1alpha C2 domai 99.8 8.9E-21 1.9E-25 177.3 14.0 115 52-170 17-139 (146)
13 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.5E-20 3.2E-25 167.9 14.8 115 67-183 1-121 (121)
14 cd08385 C2A_Synaptotagmin-1-5- 99.8 7.2E-21 1.6E-25 170.2 12.5 116 53-168 3-123 (124)
15 cd08389 C2A_Synaptotagmin-14_1 99.8 9.7E-21 2.1E-25 171.1 12.3 116 53-169 3-124 (124)
16 cd08388 C2A_Synaptotagmin-4-11 99.8 1.3E-20 2.9E-25 171.3 13.1 117 53-169 3-128 (128)
17 cd08681 C2_fungal_Inn1p-like C 99.8 1.2E-20 2.6E-25 167.2 12.5 115 66-181 1-118 (118)
18 cd04030 C2C_KIAA1228 C2 domain 99.8 1.7E-20 3.6E-25 168.0 12.6 117 52-168 2-127 (127)
19 cd08692 C2B_Tac2-N C2 domain s 99.8 1.8E-21 3.9E-26 179.7 6.4 110 174-288 2-135 (135)
20 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.2E-20 7E-25 166.0 13.7 117 53-169 3-125 (125)
21 cd08521 C2A_SLP C2 domain firs 99.8 2.5E-20 5.4E-25 165.8 12.6 115 53-167 1-123 (123)
22 cd04036 C2_cPLA2 C2 domain pre 99.8 4.5E-20 9.9E-25 164.3 14.0 113 68-181 2-117 (119)
23 cd08375 C2_Intersectin C2 doma 99.8 6.3E-20 1.4E-24 168.8 15.2 120 61-181 10-135 (136)
24 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.1E-20 6.8E-25 167.4 12.9 116 67-182 1-126 (127)
25 cd04031 C2A_RIM1alpha C2 domai 99.8 2.9E-20 6.3E-25 165.8 12.4 115 53-168 3-125 (125)
26 cd08685 C2_RGS-like C2 domain 99.8 1.7E-20 3.7E-25 168.7 10.9 112 53-167 1-119 (119)
27 cd08390 C2A_Synaptotagmin-15-1 99.8 5E-20 1.1E-24 164.1 13.3 117 53-169 1-123 (123)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 6.5E-20 1.4E-24 162.2 13.9 115 66-181 1-121 (121)
29 cd08407 C2B_Synaptotagmin-13 C 99.8 4.6E-21 1E-25 177.5 6.8 112 172-288 1-137 (138)
30 COG5038 Ca2+-dependent lipid-b 99.8 9.6E-20 2.1E-24 208.6 18.2 230 2-250 378-649 (1227)
31 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.2E-20 1.3E-24 167.5 13.1 109 67-177 1-125 (126)
32 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.3E-20 2E-24 164.2 14.0 112 68-181 2-121 (121)
33 cd04024 C2A_Synaptotagmin-like 99.8 1E-19 2.3E-24 162.6 13.9 115 66-181 1-128 (128)
34 KOG1013 Synaptic vesicle prote 99.8 3.3E-21 7.2E-26 197.2 2.5 235 52-290 79-355 (362)
35 cd04019 C2C_MCTP_PRT_plant C2 99.8 2E-19 4.4E-24 168.4 14.2 117 67-184 1-134 (150)
36 cd08678 C2_C21orf25-like C2 do 99.8 3.4E-19 7.4E-24 160.6 14.5 114 68-185 1-123 (126)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.8E-19 6.1E-24 159.9 13.7 112 67-179 1-122 (123)
38 cd08406 C2B_Synaptotagmin-12 C 99.8 6.9E-20 1.5E-24 169.0 8.9 115 53-169 2-123 (136)
39 cd08395 C2C_Munc13 C2 domain t 99.8 3E-19 6.5E-24 161.7 12.4 102 67-169 1-112 (120)
40 cd08407 C2B_Synaptotagmin-13 C 99.8 1.1E-19 2.5E-24 168.2 9.2 114 53-168 2-124 (138)
41 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.2E-18 2.6E-23 157.7 15.7 115 65-184 3-125 (126)
42 cd04015 C2_plant_PLD C2 domain 99.8 1E-18 2.2E-23 164.8 15.6 116 65-182 6-158 (158)
43 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.8E-19 1.3E-23 159.0 13.0 110 67-181 1-119 (121)
44 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 5.4E-19 1.2E-23 159.7 12.7 114 67-182 1-133 (133)
45 cd08384 C2B_Rabphilin_Doc2 C2 99.8 3.3E-19 7.1E-24 161.6 10.1 114 54-169 1-121 (133)
46 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 7.7E-19 1.7E-23 166.3 13.0 117 53-169 2-138 (162)
47 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.5E-18 5.4E-23 152.1 14.6 112 66-181 1-118 (119)
48 cd04014 C2_PKC_epsilon C2 doma 99.8 3.2E-18 6.9E-23 155.3 15.5 115 65-184 3-131 (132)
49 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.9E-18 4.1E-23 155.1 13.6 111 68-180 2-120 (121)
50 cd04046 C2_Calpain C2 domain p 99.8 4.9E-18 1.1E-22 153.4 15.8 117 64-184 1-124 (126)
51 cd04044 C2A_Tricalbin-like C2 99.8 2.5E-18 5.4E-23 152.7 13.3 117 65-183 1-124 (124)
52 cd08404 C2B_Synaptotagmin-4 C2 99.8 6.9E-19 1.5E-23 160.6 9.5 115 53-169 2-123 (136)
53 cd08402 C2B_Synaptotagmin-1 C2 99.8 7.4E-19 1.6E-23 160.2 9.4 116 53-170 2-124 (136)
54 cd04017 C2D_Ferlin C2 domain f 99.8 6.3E-18 1.4E-22 154.4 15.4 118 67-184 2-134 (135)
55 cd08408 C2B_Synaptotagmin-14_1 99.8 8.4E-19 1.8E-23 161.9 8.9 116 53-169 2-125 (138)
56 cd04010 C2B_RasA3 C2 domain se 99.8 2.3E-18 4.9E-23 161.3 11.7 101 67-169 1-122 (148)
57 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.1E-18 2.4E-23 158.6 9.4 115 53-169 1-122 (134)
58 cd04043 C2_Munc13_fungal C2 do 99.8 1E-17 2.2E-22 150.1 14.8 115 67-184 2-123 (126)
59 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.1E-18 2.4E-23 159.0 8.8 115 53-169 2-123 (136)
60 KOG1030 Predicted Ca2+-depende 99.8 2.9E-18 6.2E-23 162.3 11.6 97 64-162 4-101 (168)
61 cd04026 C2_PKC_alpha_gamma C2 99.8 5.3E-18 1.1E-22 153.3 12.4 120 53-175 2-127 (131)
62 cd08406 C2B_Synaptotagmin-12 C 99.8 4.1E-19 8.8E-24 163.9 5.1 112 173-288 2-135 (136)
63 cd08409 C2B_Synaptotagmin-15 C 99.8 1.9E-18 4.1E-23 158.9 9.4 116 53-169 2-124 (137)
64 cd04050 C2B_Synaptotagmin-like 99.8 6.8E-18 1.5E-22 147.6 12.0 100 67-169 1-102 (105)
65 cd04039 C2_PSD C2 domain prese 99.8 5.9E-18 1.3E-22 150.0 11.7 95 66-160 1-100 (108)
66 cd08692 C2B_Tac2-N C2 domain s 99.8 2.7E-18 5.9E-23 158.6 9.7 114 54-168 2-122 (135)
67 cd08688 C2_KIAA0528-like C2 do 99.8 5.1E-18 1.1E-22 149.7 10.9 102 68-169 1-109 (110)
68 cd08373 C2A_Ferlin C2 domain f 99.8 2E-17 4.4E-22 148.9 14.9 116 72-189 2-123 (127)
69 cd04035 C2A_Rabphilin_Doc2 C2 99.8 1.2E-17 2.5E-22 149.5 13.0 115 53-167 2-123 (123)
70 cd00276 C2B_Synaptotagmin C2 d 99.7 3.7E-18 8.1E-23 153.5 9.7 117 53-171 1-124 (134)
71 cd08410 C2B_Synaptotagmin-17 C 99.7 3.1E-18 6.8E-23 156.7 9.4 116 53-169 1-123 (135)
72 cd04027 C2B_Munc13 C2 domain s 99.7 1.6E-17 3.5E-22 150.2 13.7 109 67-179 2-127 (127)
73 cd04041 C2A_fungal C2 domain f 99.7 9.2E-18 2E-22 148.3 10.5 100 66-168 1-107 (111)
74 cd04009 C2B_Munc13-like C2 dom 99.7 1.2E-17 2.6E-22 152.3 11.2 106 52-157 2-118 (133)
75 cd08382 C2_Smurf-like C2 domai 99.7 3.2E-17 6.9E-22 147.6 13.0 109 68-179 2-122 (123)
76 KOG2059 Ras GTPase-activating 99.7 1.6E-17 3.5E-22 182.6 12.7 176 66-249 5-218 (800)
77 cd08394 C2A_Munc13 C2 domain f 99.7 1.2E-16 2.6E-21 146.2 13.5 99 65-169 1-101 (127)
78 cd04018 C2C_Ferlin C2 domain t 99.7 6.7E-17 1.5E-21 151.9 11.5 107 67-173 1-129 (151)
79 cd04049 C2_putative_Elicitor-r 99.7 2.2E-16 4.8E-21 141.4 13.6 105 66-170 1-109 (124)
80 cd04051 C2_SRC2_like C2 domain 99.7 8.3E-17 1.8E-21 144.2 10.5 111 67-177 1-125 (125)
81 cd08409 C2B_Synaptotagmin-15 C 99.7 2E-17 4.4E-22 152.0 6.6 114 172-289 1-137 (137)
82 cd08676 C2A_Munc13-like C2 dom 99.7 1.1E-16 2.5E-21 150.7 11.7 102 61-167 23-153 (153)
83 KOG0696 Serine/threonine prote 99.7 1.1E-17 2.4E-22 176.2 5.2 118 57-175 171-294 (683)
84 cd04011 C2B_Ferlin C2 domain s 99.7 2.2E-16 4.8E-21 139.2 12.1 101 65-169 3-110 (111)
85 cd04040 C2D_Tricalbin-like C2 99.7 3.2E-16 7E-21 138.0 12.8 108 68-176 1-113 (115)
86 cd04045 C2C_Tricalbin-like C2 99.7 3.5E-16 7.6E-21 140.8 13.3 107 66-175 1-109 (120)
87 cd04032 C2_Perforin C2 domain 99.7 2.5E-16 5.3E-21 144.1 11.6 94 62-156 24-118 (127)
88 cd08675 C2B_RasGAP C2 domain s 99.7 2.7E-16 5.9E-21 144.8 11.5 102 68-170 1-121 (137)
89 cd08383 C2A_RasGAP C2 domain ( 99.7 6.7E-16 1.5E-20 136.0 13.5 108 68-181 2-117 (117)
90 cd04052 C2B_Tricalbin-like C2 99.7 6.4E-16 1.4E-20 136.7 11.9 100 83-183 9-110 (111)
91 cd08690 C2_Freud-1 C2 domain f 99.7 1.4E-15 2.9E-20 143.8 14.8 117 68-184 4-139 (155)
92 cd08408 C2B_Synaptotagmin-14_1 99.7 7.8E-17 1.7E-21 148.8 5.3 113 173-288 2-137 (138)
93 cd04037 C2E_Ferlin C2 domain f 99.7 6.5E-16 1.4E-20 139.5 11.2 115 67-183 1-120 (124)
94 cd04038 C2_ArfGAP C2 domain pr 99.6 1.7E-15 3.6E-20 141.5 13.3 92 66-160 2-94 (145)
95 cd04021 C2_E3_ubiquitin_ligase 99.6 2E-15 4.3E-20 136.6 13.1 110 66-179 2-124 (125)
96 PLN03008 Phospholipase D delta 99.6 1.3E-15 2.7E-20 172.8 14.1 121 64-186 12-181 (868)
97 cd04048 C2A_Copine C2 domain f 99.6 2E-15 4.2E-20 134.9 10.6 96 72-168 6-113 (120)
98 cd08691 C2_NEDL1-like C2 domai 99.6 6.1E-15 1.3E-19 136.5 13.8 109 67-179 2-136 (137)
99 cd08410 C2B_Synaptotagmin-17 C 99.6 7.8E-16 1.7E-20 140.9 6.5 112 173-288 1-135 (135)
100 cd04013 C2_SynGAP_like C2 doma 99.6 1.9E-14 4.1E-19 134.8 14.6 112 66-184 11-141 (146)
101 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.6E-15 5.7E-20 136.9 7.1 112 172-288 1-135 (136)
102 cd00275 C2_PLC_like C2 domain 99.6 3.4E-14 7.3E-19 126.8 13.8 111 67-181 3-127 (128)
103 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.1E-15 6.7E-20 136.1 7.0 95 189-288 33-134 (134)
104 cd08686 C2_ABR C2 domain in th 99.6 4.5E-14 9.8E-19 127.8 12.5 93 68-168 1-108 (118)
105 PLN03200 cellulose synthase-in 99.5 1.3E-14 2.8E-19 177.1 11.3 119 63-183 1977-2101(2102)
106 cd08404 C2B_Synaptotagmin-4 C2 99.5 9.3E-15 2E-19 133.4 7.4 112 172-288 1-135 (136)
107 cd04047 C2B_Copine C2 domain s 99.5 5.8E-14 1.3E-18 123.1 10.6 90 69-159 3-102 (110)
108 cd08405 C2B_Synaptotagmin-7 C2 99.5 9E-15 1.9E-19 133.4 5.3 112 172-288 1-135 (136)
109 cd08384 C2B_Rabphilin_Doc2 C2 99.5 3.5E-14 7.6E-19 128.7 6.7 96 189-288 32-133 (133)
110 cd08677 C2A_Synaptotagmin-13 C 99.5 7.2E-14 1.6E-18 126.6 7.2 96 173-273 1-117 (118)
111 KOG1028 Ca2+-dependent phospho 99.5 1.4E-13 3.1E-18 148.6 10.0 113 53-167 285-404 (421)
112 PF00168 C2: C2 domain; Inter 99.4 4.8E-13 1E-17 109.2 7.9 81 68-149 1-85 (85)
113 cd00276 C2B_Synaptotagmin C2 d 99.4 4.3E-13 9.3E-18 120.6 5.4 94 190-288 34-134 (134)
114 KOG1011 Neurotransmitter relea 99.4 4.2E-13 9.2E-18 146.5 4.4 189 66-290 295-509 (1283)
115 cd00030 C2 C2 domain. The C2 d 99.3 9E-12 1.9E-16 102.1 10.9 99 68-167 1-102 (102)
116 smart00239 C2 Protein kinase C 99.3 1.3E-11 2.7E-16 102.4 10.8 94 68-162 2-99 (101)
117 cd08374 C2F_Ferlin C2 domain s 99.3 1.5E-11 3.2E-16 113.8 10.1 93 68-160 2-126 (133)
118 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.2 1.4E-11 3.1E-16 116.8 5.7 91 189-283 46-156 (162)
119 COG5038 Ca2+-dependent lipid-b 99.2 9.6E-11 2.1E-15 135.7 10.2 108 63-171 1037-1146(1227)
120 KOG1328 Synaptic vesicle prote 99.1 3.2E-11 6.9E-16 133.6 5.0 105 53-157 934-1049(1103)
121 PLN02270 phospholipase D alpha 99.1 8.1E-10 1.8E-14 126.0 13.9 120 65-186 7-152 (808)
122 cd04029 C2A_SLP-4_5 C2 domain 99.1 2.2E-10 4.7E-15 103.9 6.8 77 172-252 1-95 (125)
123 PLN02223 phosphoinositide phos 99.1 1E-09 2.3E-14 120.8 13.2 113 65-181 408-536 (537)
124 cd08393 C2A_SLP-1_2 C2 domain 99.0 3.5E-10 7.6E-15 102.3 6.9 77 172-252 1-95 (125)
125 cd08392 C2A_SLP-3 C2 domain fi 99.0 4.9E-10 1.1E-14 102.4 7.0 78 172-253 1-96 (128)
126 cd08680 C2_Kibra C2 domain fou 99.0 7.5E-10 1.6E-14 100.9 7.0 61 189-253 33-95 (124)
127 PLN02952 phosphoinositide phos 99.0 3.6E-09 7.8E-14 118.4 13.6 101 65-169 469-581 (599)
128 KOG1328 Synaptic vesicle prote 99.0 1.2E-10 2.6E-15 129.2 1.4 123 63-187 111-306 (1103)
129 cd08381 C2B_PI3K_class_II C2 d 99.0 9.6E-10 2.1E-14 99.3 6.5 61 189-253 31-93 (122)
130 cd04028 C2B_RIM1alpha C2 domai 98.9 5.7E-09 1.2E-13 97.9 10.8 59 189-253 49-108 (146)
131 PLN02230 phosphoinositide phos 98.9 6.9E-09 1.5E-13 116.1 12.5 113 65-181 468-597 (598)
132 cd08388 C2A_Synaptotagmin-4-11 98.9 3.5E-09 7.6E-14 96.4 7.4 76 172-253 2-96 (128)
133 KOG0905 Phosphoinositide 3-kin 98.9 2E-09 4.2E-14 124.4 6.2 116 52-169 1512-1635(1639)
134 PLN02222 phosphoinositide phos 98.9 1.7E-08 3.6E-13 112.9 13.4 113 65-181 451-580 (581)
135 KOG0169 Phosphoinositide-speci 98.9 8.8E-09 1.9E-13 115.9 11.2 115 67-182 617-744 (746)
136 cd08385 C2A_Synaptotagmin-1-5- 98.9 3.2E-09 6.8E-14 95.0 5.8 76 172-253 2-94 (124)
137 cd04031 C2A_RIM1alpha C2 domai 98.8 5.4E-09 1.2E-13 93.2 6.8 61 189-253 35-97 (125)
138 KOG1031 Predicted Ca2+-depende 98.8 7.8E-09 1.7E-13 112.7 9.1 115 66-180 3-134 (1169)
139 PLN02228 Phosphoinositide phos 98.8 2.1E-08 4.6E-13 111.8 12.4 115 66-184 431-563 (567)
140 cd04030 C2C_KIAA1228 C2 domain 98.8 6.5E-09 1.4E-13 93.1 6.4 77 172-252 2-95 (127)
141 KOG2059 Ras GTPase-activating 98.8 7.2E-09 1.6E-13 115.4 7.1 147 37-184 102-278 (800)
142 cd08387 C2A_Synaptotagmin-8 C2 98.8 8.5E-09 1.9E-13 92.4 6.2 76 172-253 2-94 (124)
143 cd08685 C2_RGS-like C2 domain 98.7 1.6E-08 3.5E-13 91.1 6.2 60 189-253 30-90 (119)
144 cd08395 C2C_Munc13 C2 domain t 98.7 5.3E-08 1.2E-12 88.5 9.4 69 189-259 18-91 (120)
145 cd08521 C2A_SLP C2 domain firs 98.7 2.1E-08 4.6E-13 89.1 6.4 60 189-252 34-94 (123)
146 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5E-08 1.1E-12 87.0 7.8 84 68-157 1-88 (109)
147 cd08389 C2A_Synaptotagmin-14_1 98.7 2.6E-08 5.7E-13 90.1 5.4 75 172-253 2-94 (124)
148 KOG1013 Synaptic vesicle prote 98.7 2.9E-08 6.3E-13 102.9 6.0 102 52-153 219-327 (362)
149 cd08386 C2A_Synaptotagmin-7 C2 98.6 5.6E-08 1.2E-12 86.9 6.6 75 172-252 2-94 (125)
150 cd08390 C2A_Synaptotagmin-15-1 98.6 4.7E-08 1E-12 87.0 5.4 58 190-253 35-93 (123)
151 KOG1264 Phospholipase C [Lipid 98.6 2E-07 4.4E-12 105.1 11.0 116 66-186 1065-1193(1267)
152 KOG0696 Serine/threonine prote 98.6 5.2E-08 1.1E-12 104.0 5.3 82 171-256 167-262 (683)
153 cd08690 C2_Freud-1 C2 domain f 98.6 1.5E-07 3.3E-12 89.3 7.8 77 172-252 3-89 (155)
154 cd04035 C2A_Rabphilin_Doc2 C2 98.5 1.9E-07 4.1E-12 83.5 7.0 61 189-253 34-96 (123)
155 cd04009 C2B_Munc13-like C2 dom 98.5 2.1E-07 4.5E-12 85.0 7.2 80 172-253 2-100 (133)
156 KOG1327 Copine [Signal transdu 98.5 9.9E-07 2.2E-11 97.1 11.8 155 98-255 41-220 (529)
157 cd04041 C2A_fungal C2 domain f 98.5 7.4E-07 1.6E-11 78.8 8.7 59 189-253 21-81 (111)
158 cd08691 C2_NEDL1-like C2 domai 98.3 2.1E-06 4.6E-11 79.7 9.1 99 188-304 18-132 (137)
159 cd04037 C2E_Ferlin C2 domain f 98.3 1.4E-06 3E-11 78.8 7.7 86 188-281 18-107 (124)
160 PLN02352 phospholipase D epsil 98.3 3E-06 6.6E-11 97.1 12.0 114 65-186 9-134 (758)
161 cd08682 C2_Rab11-FIP_classI C2 98.3 1.5E-06 3.2E-11 78.3 7.6 57 188-253 17-77 (126)
162 cd08686 C2_ABR C2 domain in th 98.3 1.9E-06 4.1E-11 78.4 8.1 66 179-251 3-68 (118)
163 cd04010 C2B_RasA3 C2 domain se 98.3 2.1E-06 4.6E-11 80.7 8.2 61 189-253 17-91 (148)
164 cd04039 C2_PSD C2 domain prese 98.3 3.1E-06 6.6E-11 75.2 8.3 54 191-253 26-79 (108)
165 KOG2060 Rab3 effector RIM1 and 98.3 5E-07 1.1E-11 95.2 3.8 136 18-169 233-379 (405)
166 KOG1326 Membrane-associated pr 98.3 5.1E-07 1.1E-11 103.9 3.8 91 63-154 610-703 (1105)
167 cd04032 C2_Perforin C2 domain 98.3 2.7E-06 5.8E-11 78.1 7.7 74 171-253 26-101 (127)
168 cd04011 C2B_Ferlin C2 domain s 98.3 4E-06 8.7E-11 73.9 8.5 70 175-253 4-77 (111)
169 cd04017 C2D_Ferlin C2 domain f 98.2 5.8E-06 1.3E-10 75.6 9.4 87 188-289 19-116 (135)
170 cd04026 C2_PKC_alpha_gamma C2 98.2 6.6E-06 1.4E-10 74.4 8.9 61 189-253 32-92 (131)
171 cd04048 C2A_Copine C2 domain f 98.2 2.8E-06 6.1E-11 75.9 6.0 61 188-252 18-79 (120)
172 cd04018 C2C_Ferlin C2 domain t 98.2 3.6E-06 7.8E-11 79.5 6.9 83 189-280 33-129 (151)
173 cd08375 C2_Intersectin C2 doma 98.2 1.1E-05 2.5E-10 74.4 9.8 71 172-252 14-87 (136)
174 cd08688 C2_KIAA0528-like C2 do 98.1 3.6E-06 7.9E-11 74.2 5.4 55 189-252 19-75 (110)
175 cd08675 C2B_RasGAP C2 domain s 98.1 1.4E-05 2.9E-10 73.9 9.0 102 188-304 16-134 (137)
176 KOG1326 Membrane-associated pr 98.1 3E-06 6.6E-11 97.8 5.3 188 55-251 194-440 (1105)
177 cd04050 C2B_Synaptotagmin-like 98.1 1.2E-05 2.5E-10 70.3 7.7 55 188-252 18-72 (105)
178 cd04015 C2_plant_PLD C2 domain 98.1 1.7E-05 3.7E-10 75.1 9.3 84 188-281 55-144 (158)
179 KOG1011 Neurotransmitter relea 98.1 1.4E-05 3.1E-10 88.7 9.8 104 65-169 1124-1237(1283)
180 cd08379 C2D_MCTP_PRT_plant C2 98.1 1.4E-05 3.1E-10 73.2 8.2 55 188-253 21-75 (126)
181 cd04047 C2B_Copine C2 domain s 98.0 1.5E-05 3.3E-10 69.7 7.7 62 188-253 18-82 (110)
182 cd08401 C2A_RasA2_RasA3 C2 dom 98.0 8.7E-06 1.9E-10 73.5 5.9 55 189-253 20-74 (121)
183 cd04019 C2C_MCTP_PRT_plant C2 98.0 3E-05 6.5E-10 72.9 9.2 87 188-290 18-108 (150)
184 cd08383 C2A_RasGAP C2 domain ( 98.0 3.4E-05 7.5E-10 67.8 9.0 79 189-277 16-101 (117)
185 cd08378 C2B_MCTP_PRT_plant C2 98.0 1.8E-05 4E-10 71.4 7.1 54 190-253 16-69 (121)
186 cd04016 C2_Tollip C2 domain pr 98.0 2.8E-05 6.1E-10 70.8 8.2 68 173-251 2-72 (121)
187 cd04022 C2A_MCTP_PRT_plant C2 98.0 1.2E-05 2.5E-10 72.6 5.5 57 188-253 18-76 (127)
188 cd04036 C2_cPLA2 C2 domain pre 98.0 1.2E-05 2.7E-10 71.5 5.6 59 188-253 18-76 (119)
189 cd08678 C2_C21orf25-like C2 do 98.0 1.6E-05 3.5E-10 71.7 6.4 58 188-254 15-72 (126)
190 cd04014 C2_PKC_epsilon C2 doma 97.9 6.5E-05 1.4E-09 68.2 10.2 76 189-275 33-117 (132)
191 KOG1030 Predicted Ca2+-depende 97.9 2.8E-05 6E-10 74.6 7.7 73 173-256 6-81 (168)
192 cd08681 C2_fungal_Inn1p-like C 97.9 3.2E-05 7E-10 68.4 7.4 56 188-253 19-75 (118)
193 cd08373 C2A_Ferlin C2 domain f 97.9 2.3E-05 4.9E-10 70.6 6.4 57 188-253 12-69 (127)
194 cd04038 C2_ArfGAP C2 domain pr 97.9 4.4E-05 9.4E-10 71.6 8.5 53 189-252 20-72 (145)
195 cd08376 C2B_MCTP_PRT C2 domain 97.9 2.4E-05 5.3E-10 69.0 6.2 56 188-253 18-73 (116)
196 cd08400 C2_Ras_p21A1 C2 domain 97.9 0.00011 2.5E-09 66.5 10.6 67 175-252 6-73 (126)
197 cd08382 C2_Smurf-like C2 domai 97.9 4.3E-05 9.3E-10 68.8 7.4 55 188-253 18-72 (123)
198 cd08391 C2A_C2C_Synaptotagmin_ 97.8 6E-05 1.3E-09 66.5 8.0 55 189-253 26-80 (121)
199 cd04024 C2A_Synaptotagmin-like 97.8 6.6E-05 1.4E-09 67.0 8.3 56 188-253 21-76 (128)
200 cd04042 C2A_MCTP_PRT C2 domain 97.8 4.5E-05 9.7E-10 68.1 6.9 56 188-253 18-73 (121)
201 cd04054 C2A_Rasal1_RasA4 C2 do 97.8 0.00011 2.3E-09 66.1 8.8 55 188-252 18-72 (121)
202 PLN02964 phosphatidylserine de 97.8 2E-05 4.4E-10 89.5 5.0 92 62-161 50-143 (644)
203 cd04025 C2B_RasA1_RasA4 C2 dom 97.8 6.5E-05 1.4E-09 67.2 7.0 54 189-252 19-72 (123)
204 cd08684 C2A_Tac2-N C2 domain f 97.8 2.5E-05 5.4E-10 68.0 4.0 95 69-166 2-102 (103)
205 cd04052 C2B_Tricalbin-like C2 97.8 5.7E-05 1.2E-09 66.8 6.3 58 187-253 9-66 (111)
206 cd04043 C2_Munc13_fungal C2 do 97.8 7.7E-05 1.7E-09 66.8 7.1 59 188-253 19-77 (126)
207 cd04033 C2_NEDD4_NEDD4L C2 dom 97.7 7.3E-05 1.6E-09 67.5 7.0 62 188-253 18-79 (133)
208 cd04027 C2B_Munc13 C2 domain s 97.7 0.00015 3.3E-09 65.6 8.9 54 188-252 19-72 (127)
209 cd08676 C2A_Munc13-like C2 dom 97.7 0.00012 2.7E-09 69.3 8.1 62 188-251 46-128 (153)
210 cd04046 C2_Calpain C2 domain p 97.7 0.00013 2.8E-09 66.0 7.8 55 188-253 21-75 (126)
211 cd08374 C2F_Ferlin C2 domain s 97.7 2.8E-05 6.1E-10 72.2 3.2 57 190-252 24-104 (133)
212 cd04045 C2C_Tricalbin-like C2 97.7 0.00018 3.9E-09 64.8 8.4 56 188-253 19-74 (120)
213 cd04044 C2A_Tricalbin-like C2 97.7 0.00015 3.2E-09 64.3 7.5 55 190-253 23-77 (124)
214 cd08377 C2C_MCTP_PRT C2 domain 97.7 0.00019 4E-09 63.4 8.0 53 189-252 20-72 (119)
215 cd08394 C2A_Munc13 C2 domain f 97.6 0.00041 8.9E-09 64.1 9.6 68 173-252 2-69 (127)
216 cd04049 C2_putative_Elicitor-r 97.6 0.00028 6E-09 63.2 8.3 55 189-252 20-77 (124)
217 cd04021 C2_E3_ubiquitin_ligase 97.5 0.00046 1E-08 62.5 8.0 55 188-253 19-73 (125)
218 cd04040 C2D_Tricalbin-like C2 97.4 0.00038 8.1E-09 61.2 6.8 57 188-253 17-73 (115)
219 cd08683 C2_C2cd3 C2 domain fou 97.4 0.0002 4.4E-09 66.3 4.4 100 68-167 1-143 (143)
220 PLN03200 cellulose synthase-in 97.3 0.00032 6.8E-09 88.0 6.8 72 172-251 1979-2051(2102)
221 PLN03008 Phospholipase D delta 97.3 0.00048 1E-08 80.0 7.1 89 189-288 75-173 (868)
222 cd00275 C2_PLC_like C2 domain 97.1 0.0011 2.3E-08 59.1 6.2 61 188-253 22-84 (128)
223 KOG0905 Phosphoinositide 3-kin 97.1 0.00038 8.2E-09 82.1 3.9 81 172-256 1512-1608(1639)
224 cd04051 C2_SRC2_like C2 domain 97.1 0.0017 3.8E-08 58.0 7.1 57 188-252 18-78 (125)
225 PF00168 C2: C2 domain; Inter 97.0 0.001 2.2E-08 53.9 4.8 58 188-253 17-75 (85)
226 KOG3837 Uncharacterized conser 96.9 0.00096 2.1E-08 71.7 4.3 121 63-183 364-504 (523)
227 KOG1327 Copine [Signal transdu 96.7 0.0047 1E-07 68.8 8.0 90 67-157 137-236 (529)
228 smart00239 C2 Protein kinase C 96.6 0.0086 1.9E-07 49.1 7.0 58 189-253 19-76 (101)
229 cd04013 C2_SynGAP_like C2 doma 96.3 0.021 4.6E-07 53.9 8.9 66 176-251 12-77 (146)
230 PF15627 CEP76-C2: CEP76 C2 do 96.2 0.053 1.1E-06 51.9 11.0 124 62-185 5-153 (156)
231 cd08684 C2A_Tac2-N C2 domain f 96.0 0.0025 5.5E-08 55.7 1.0 77 191-273 21-102 (103)
232 KOG1265 Phospholipase C [Lipid 95.9 0.025 5.3E-07 65.9 8.5 88 66-160 703-799 (1189)
233 cd00030 C2 C2 domain. The C2 d 95.8 0.034 7.4E-07 45.0 7.1 56 189-253 18-73 (102)
234 PLN02223 phosphoinositide phos 95.6 0.021 4.5E-07 64.1 6.2 60 189-253 433-492 (537)
235 PF12416 DUF3668: Cep120 prote 95.5 0.12 2.5E-06 55.4 11.4 115 68-185 2-135 (340)
236 KOG2060 Rab3 effector RIM1 and 95.4 0.084 1.8E-06 56.6 9.5 114 183-308 283-396 (405)
237 cd08693 C2_PI3K_class_I_beta_d 95.2 0.11 2.4E-06 50.3 9.1 104 66-182 8-136 (173)
238 PLN02952 phosphoinositide phos 95.1 0.061 1.3E-06 61.3 7.9 58 191-253 497-554 (599)
239 cd08398 C2_PI3K_class_I_alpha 94.7 0.18 4E-06 48.2 9.1 104 66-184 8-124 (158)
240 PLN02230 phosphoinositide phos 94.3 0.065 1.4E-06 61.1 5.7 58 190-252 495-552 (598)
241 PLN02222 phosphoinositide phos 94.0 0.073 1.6E-06 60.5 5.4 58 190-252 478-535 (581)
242 cd08689 C2_fungal_Pkc1p C2 dom 94.0 0.21 4.5E-06 45.2 7.2 51 191-255 23-73 (109)
243 KOG1452 Predicted Rho GTPase-a 93.9 0.11 2.4E-06 54.7 6.0 118 60-181 45-166 (442)
244 PF10358 NT-C2: N-terminal C2 93.8 1.3 2.7E-05 40.6 12.4 117 65-185 6-138 (143)
245 cd08380 C2_PI3K_like C2 domain 93.7 0.37 8E-06 45.3 8.7 103 67-181 9-122 (156)
246 cd08397 C2_PI3K_class_III C2 d 92.5 0.42 9E-06 45.8 7.2 89 85-184 28-125 (159)
247 KOG1031 Predicted Ca2+-depende 91.9 0.19 4.1E-06 56.5 4.6 56 189-252 23-79 (1169)
248 cd04012 C2A_PI3K_class_II C2 d 91.8 0.64 1.4E-05 44.7 7.6 109 66-185 8-138 (171)
249 PLN02228 Phosphoinositide phos 91.5 0.22 4.8E-06 56.6 4.8 58 190-252 457-515 (567)
250 cd08399 C2_PI3K_class_I_gamma 91.0 1.4 3E-05 43.2 9.1 106 67-184 11-140 (178)
251 KOG1264 Phospholipase C [Lipid 90.5 0.85 1.8E-05 53.3 8.1 74 175-251 1065-1142(1267)
252 cd08687 C2_PKN-like C2 domain 90.2 2.6 5.6E-05 37.4 9.1 85 85-181 7-92 (98)
253 cd08695 C2_Dock-B C2 domains f 87.6 4.2 9.2E-05 40.3 9.8 56 98-153 53-112 (189)
254 smart00142 PI3K_C2 Phosphoinos 87.1 3.4 7.3E-05 36.3 7.9 71 68-138 13-91 (100)
255 cd08694 C2_Dock-A C2 domains f 86.9 5.3 0.00011 39.9 10.0 56 98-153 53-114 (196)
256 PF00792 PI3K_C2: Phosphoinosi 86.6 2.5 5.4E-05 39.2 7.2 70 101-181 23-100 (142)
257 PLN02964 phosphatidylserine de 85.6 1.4 3E-05 51.0 5.9 59 187-255 64-123 (644)
258 PF14429 DOCK-C2: C2 domain in 85.1 3 6.4E-05 40.4 7.2 76 98-184 59-139 (184)
259 cd08697 C2_Dock-D C2 domains f 83.8 19 0.00041 35.6 12.1 104 33-154 4-123 (185)
260 KOG4269 Rac GTPase-activating 82.7 0.53 1.1E-05 55.4 1.0 68 64-139 757-829 (1112)
261 cd08679 C2_DOCK180_related C2 81.0 17 0.00036 35.1 10.6 55 99-154 54-115 (178)
262 PF15625 CC2D2AN-C2: CC2D2A N- 77.5 9.4 0.0002 36.7 7.6 69 86-156 36-107 (168)
263 KOG0169 Phosphoinositide-speci 75.6 3 6.5E-05 48.6 4.2 60 189-253 639-699 (746)
264 KOG0694 Serine/threonine prote 66.7 1.9 4.1E-05 49.8 0.0 94 86-184 27-123 (694)
265 KOG1329 Phospholipase D1 [Lipi 66.4 12 0.00027 44.6 6.5 97 87-185 138-243 (887)
266 cd08696 C2_Dock-C C2 domains f 66.3 19 0.00041 35.4 6.9 57 98-154 54-118 (179)
267 PTZ00447 apical membrane antig 62.9 59 0.0013 35.4 10.1 112 62-180 54-171 (508)
268 cd08398 C2_PI3K_class_I_alpha 59.9 27 0.00059 33.5 6.6 57 191-252 26-85 (158)
269 PLN02270 phospholipase D alpha 56.5 16 0.00034 43.6 5.0 82 190-282 46-135 (808)
270 smart00142 PI3K_C2 Phosphoinos 52.1 22 0.00048 31.1 4.2 40 214-254 53-94 (100)
271 cd08399 C2_PI3K_class_I_gamma 48.9 24 0.00052 34.6 4.3 41 213-254 49-91 (178)
272 cd08380 C2_PI3K_like C2 domain 47.2 46 0.001 31.1 5.8 60 191-254 28-90 (156)
273 PF11618 DUF3250: Protein of u 46.3 57 0.0012 29.4 6.0 91 90-181 2-104 (107)
274 cd08694 C2_Dock-A C2 domains f 44.4 71 0.0015 32.0 6.8 69 174-250 24-93 (196)
275 KOG1265 Phospholipase C [Lipid 43.0 33 0.00072 41.2 4.9 58 193-251 722-780 (1189)
276 KOG2419 Phosphatidylserine dec 42.4 6 0.00013 45.6 -1.1 75 66-141 280-358 (975)
277 PF06219 DUF1005: Protein of u 41.7 3.4E+02 0.0074 30.4 11.9 99 86-185 35-170 (460)
278 cd08397 C2_PI3K_class_III C2 d 41.5 31 0.00067 33.0 3.7 59 191-253 30-91 (159)
279 PF10409 PTEN_C2: C2 domain of 40.2 1.4E+02 0.0031 26.9 7.8 90 67-156 5-98 (134)
280 cd08693 C2_PI3K_class_I_beta_d 38.2 86 0.0019 30.4 6.3 58 191-252 27-87 (173)
281 cd08695 C2_Dock-B C2 domains f 35.9 1.2E+02 0.0027 30.1 7.0 68 174-249 24-92 (189)
282 PF07162 B9-C2: Ciliary basal 34.3 4.2E+02 0.0091 25.3 13.3 92 69-166 5-117 (168)
283 cd05137 RasGAP_CLA2_BUD2 CLA2/ 33.8 51 0.0011 36.3 4.4 40 144-184 1-46 (395)
284 PF14429 DOCK-C2: C2 domain in 32.2 1.2E+02 0.0027 29.2 6.3 72 173-251 27-100 (184)
285 PLN02352 phospholipase D epsil 29.2 90 0.0019 37.3 5.5 82 191-286 36-124 (758)
286 PF00792 PI3K_C2: Phosphoinosi 26.9 50 0.0011 30.5 2.5 57 193-253 4-65 (142)
287 cd08683 C2_C2cd3 C2 domain fou 26.7 95 0.0021 29.6 4.2 56 191-251 33-102 (143)
288 PF14909 SPATA6: Spermatogenes 23.6 3.7E+02 0.008 25.7 7.5 86 68-156 4-100 (140)
No 1
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-40 Score=352.38 Aligned_cols=236 Identities=24% Similarity=0.348 Sum_probs=207.5
Q ss_pred CCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 50 SPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 50 s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
...|.+.|++.|+.....|.|+|++|++|++++..|.+||||+++|.| .+++|+++++|+||+|||+|.|.|...+
T Consensus 151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 346789999999999999999999999999999778899999999988 5689999999999999999999977533
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEeccCCC----------
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAKQ---------- 188 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~~~l---------- 188 (558)
..++|.|.|||+|+|+ |++||++.++|..+........|++|... ..|+|+++|+|++.++++
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L 310 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNL 310 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCC
Confidence 5679999999999998 99999999999999888888899999762 237999999999998762
Q ss_pred ------CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEecc--Ccccc-ce
Q 008661 189 ------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE--GQQET-GI 258 (558)
Q Consensus 189 ------~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d--G~~e~-Gv 258 (558)
+++|||||+++ ...+++++|+||.++++++||+|| |+|.|. +.++++.++++++|||++ |.++. |.
T Consensus 311 ~~~~~~~~~d~~Vk~~l---~~~~~~~~kkkT~~~~~~~npv~n-esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~ 386 (421)
T KOG1028|consen 311 KSMDVGGLSDPYVKVTL---LDGDKRLSKKKTSVKKKTLNPVFN-ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGR 386 (421)
T ss_pred CcccCCCCCCccEEEEE---ecCCceeeeeeeecccCCCCCccc-ccEEEeCCHHHhheeEEEEEEEEcccccccceeeE
Confidence 34899999999 555799999999999999999999 999999 999999999999999999 55554 64
Q ss_pred E-EecCC-ccccccCccccCCCCCcccceeecC
Q 008661 259 W-VHQPG-SEVAQTWEPRKGKNRRLDTLVRRVP 289 (558)
Q Consensus 259 ~-v~~pg-t~~~~hW~~~l~~~r~~~~q~~~~~ 289 (558)
+ ++.-+ ....+||.+|+.+||+|+++||.+.
T Consensus 387 ~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 387 CILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred EEecCCCCchHHHHHHHHHhCccCceeeeEecc
Confidence 4 33332 2335999999999999999999876
No 2
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.90 E-value=2.6e-23 Score=187.82 Aligned_cols=112 Identities=21% Similarity=0.413 Sum_probs=100.3
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 127 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~ 127 (558)
+.++|+|.|++..+.|+|+|++|++|+ ..|.+||||+++|.+ .+++|+++++|+||+|||+|.|.++..+ ..
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 357899999999999999999999998 346799999999976 5779999999999999999999998544 45
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeec
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 167 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L 167 (558)
.+|.|+|||+|+++ +++||++.++|.++..+...++|.+|
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 69999999999998 99999999999998777778889765
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=7.8e-22 Score=178.76 Aligned_cols=113 Identities=23% Similarity=0.405 Sum_probs=101.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikk-TlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
|.|.|+|++|++|+..+ .|.+||||++.++.++++|+++.+ ++||+|||+|.|.+.. ....|.|+|||+|.++ |+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~--~~~~l~~~V~d~d~~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE--GVDSIYIEIFDERAFTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecC--CCcEEEEEEEeCCCCcCCc
Confidence 78999999999998777 789999999999999999999875 8999999999999975 3468999999999998 89
Q ss_pred ccEEEEEecc-cccCCCceeeeeecCC----CCceEEEEEEEE
Q 008661 144 TLGDCTINIS-DLRDGQRHDMWIPLQN----IKIGRLHLAITV 181 (558)
Q Consensus 144 fIGev~IpL~-eL~~~~~~e~W~~L~~----k~~GeL~LsL~y 181 (558)
+||.+.++|. .+..++..+.|++|.+ ...|+|+|+|+|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 5777777899999986 456999999987
No 4
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.87 E-value=4.4e-22 Score=179.94 Aligned_cols=116 Identities=25% Similarity=0.440 Sum_probs=104.6
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
|+++|+|.|+...+.|.|+|++|+||++++.. |.+||||++++.+ .+++|+++++++||+|||+|.|.+...+
T Consensus 2 G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l 81 (125)
T cd08393 2 GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL 81 (125)
T ss_pred cEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh
Confidence 67899999999999999999999999999975 8999999999965 3579999999999999999999987432
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
....|.|+|||++.++ +++||++.|+|.++...+....||+|+
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 3468999999999987 899999999999998888889999985
No 5
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.87 E-value=7.7e-22 Score=177.93 Aligned_cols=114 Identities=30% Similarity=0.373 Sum_probs=101.9
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEee-ccCC
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPI-STWD 125 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V-~~~e 125 (558)
+|+++|+|.|+ .+.|.|+|++|++|++++ .+.+||||++++.+ .+++|+++++++||+|||+|.|.+ ...+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 36889999999 789999999999999999 89999999999975 468999999999999999999997 3211
Q ss_pred -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
....|.|+|||++.++ +++||++.|+|.++...+....||+|.
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 3568999999999998 999999999999999888889999873
No 6
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.86 E-value=1.8e-21 Score=176.26 Aligned_cols=116 Identities=25% Similarity=0.360 Sum_probs=104.3
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
|+++|+|.|+...+.|.|+|++|+||++.+. .+.+||||++++.+ .++||+++++++||+|||+|.|.+...+
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l 81 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL 81 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh
Confidence 6789999999999999999999999998875 58899999999965 3579999999999999999999987533
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
....|.|.|||++.++ +++||++.|+|..+......+.|++|+
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 82 ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 3458999999999987 899999999999999988899999984
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=3.1e-21 Score=173.64 Aligned_cols=113 Identities=28% Similarity=0.501 Sum_probs=100.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccC----CCCceEEEEEeecCCCC-C
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW----DSPNVLVIEVRDKDHFV-D 142 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~----e~~~tL~V~V~D~D~~s-D 142 (558)
++|+|++|++|+.++..|.+||||+|++++.+++|+++++++||+|||+|.|.+... .....|.|.|||++.++ |
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999999999999999999999999999999999999999999998752 23568999999999987 9
Q ss_pred CccEEEEEeccccc--CCCceeeeeecCC------CCceEEEEEEE
Q 008661 143 DTLGDCTINISDLR--DGQRHDMWIPLQN------IKIGRLHLAIT 180 (558)
Q Consensus 143 DfIGev~IpL~eL~--~~~~~e~W~~L~~------k~~GeL~LsL~ 180 (558)
++||++.|+|.++. .+.....||+|.+ +..|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 5566789999975 24699999873
No 8
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=3.8e-21 Score=172.24 Aligned_cols=117 Identities=26% Similarity=0.524 Sum_probs=106.2
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 127 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~ 127 (558)
.|++.|+|.|++..+.|.|+|++|++|++++..|.+||||++++.+ ..++|+++++++||+|||+|.|.+...+ ..
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~ 81 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPK 81 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCC
Confidence 3678899999999999999999999999999999999999999954 4689999999999999999999987532 24
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
..|.|+|||++.++ +++||++.++|.++..++..+.||+|+
T Consensus 82 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 82 RTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 58999999999987 999999999999999888899999986
No 9
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.85 E-value=3.7e-21 Score=175.40 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=102.7
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
|+++|+|.|+...+.|.|+|++|+||++++.. |.+||||++++.+ .++||+++++++||+|||+|.|.+...+
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l 81 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL 81 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence 67899999999999999999999999999875 9999999999976 3679999999999999999999987533
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCC---CceeeeeecC
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ 168 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~---~~~e~W~~L~ 168 (558)
....|.|.|||++.++ +++||++.|+|.++... .....||+|.
T Consensus 82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 3469999999999987 89999999999999664 3567899983
No 10
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.85 E-value=4.3e-21 Score=174.49 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=102.3
Q ss_pred CceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661 54 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 126 (558)
Q Consensus 54 ~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~e-~ 126 (558)
+++|+|.|++..+.|.|+|++|+||++++..+.+||||+++|.| .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 57899999999999999999999999998889999999999975 3679999999999999999999988544 4
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCC-ceeeeeec
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPL 167 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~-~~e~W~~L 167 (558)
..+|.|+|||++.++ +++||++.|+|.++.... ....||.|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 569999999999987 999999999999996554 57889976
No 11
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.85 E-value=1.3e-20 Score=166.56 Aligned_cols=114 Identities=37% Similarity=0.612 Sum_probs=104.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 145 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI 145 (558)
+|+|+|++|++|+.++..+.+||||+++++..+++|+++++|+||.|||+|.|.+... ....|.|+|||++.++ +++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 3789999999999999889999999999999999999999999999999999998753 3679999999999987 9999
Q ss_pred EEEEEecccccCCCceeeeeecCCCCceEEEEEEEEE
Q 008661 146 GDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 182 (558)
Q Consensus 146 Gev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~ 182 (558)
|.+.++|.++..+...+.|++|++. .|+|++.+.|.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 9999999999988889999999864 69999999885
No 12
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=8.9e-21 Score=177.26 Aligned_cols=115 Identities=24% Similarity=0.240 Sum_probs=102.6
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD 125 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e 125 (558)
-|+++|+|.|. .+.|.|+|++|+||++++ ..|.+||||+++|.+ .+.||+++++|+||+|||+|.|.+..
T Consensus 17 ~G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l-- 92 (146)
T cd04028 17 MGDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP-- 92 (146)
T ss_pred cceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC--
Confidence 57899999994 789999999999999875 578899999999966 37799999999999999999999983
Q ss_pred CCceEEEEEe-ecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661 126 SPNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 170 (558)
Q Consensus 126 ~~~tL~V~V~-D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k 170 (558)
...+|.|+|| |++.++ +++||++.|+|..+..+.....||+|.+.
T Consensus 93 ~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 93 TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 5779999999 688876 89999999999999888888999999863
No 13
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=1.5e-20 Score=167.91 Aligned_cols=115 Identities=29% Similarity=0.511 Sum_probs=104.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf 144 (558)
+|+|+|++|++|+..+..|.+||||+++++. ..++|+++++++||.|||+|.|.+.. ....|.|+|||++.++ +++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED--VTQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC--CCCeEEEEEEeCCCCCCCcc
Confidence 4899999999999999999999999999987 67899999999999999999999875 3578999999999996 999
Q ss_pred cEEEEEecccccCCCceeeeeecCCC----CceEEEEEEEEEe
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLE 183 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k----~~GeL~LsL~y~p 183 (558)
||.+.++|.++..+...+.|++|.+. ..|+|+|.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988889999999753 4699999999865
No 14
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.85 E-value=7.2e-21 Score=170.22 Aligned_cols=116 Identities=31% Similarity=0.509 Sum_probs=105.2
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CCc
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 128 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~ 128 (558)
|+++|++.|+...+.|+|+|++|++|+.++..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ ...
T Consensus 3 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~ 82 (124)
T cd08385 3 GKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNK 82 (124)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCC
Confidence 678899999999999999999999999999889999999999965 4679999999999999999999987422 246
Q ss_pred eEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 129 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 129 tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
.|.|+|||++.++ +++||++.++|.++..+...+.|++|.
T Consensus 83 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 83 TLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 8999999999987 899999999999998888889999986
No 15
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.84 E-value=9.7e-21 Score=171.10 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=104.8
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEe-eccCC-CC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 127 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~-V~~~e-~~ 127 (558)
|+++|++.|+...+.|.|+|++|+||++++..+.+||||++++.+ .+++|+++++ +||+|||+|.|. +...+ ..
T Consensus 3 G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 3 GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred EEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence 678999999999999999999999999999889999999999866 5779999888 999999999998 65322 35
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
.+|.|+|||++.++ +++||++.|+|.++..+.....|++|++
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 68999999999988 9999999999999998888999999974
No 16
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.84 E-value=1.3e-20 Score=171.26 Aligned_cols=117 Identities=26% Similarity=0.315 Sum_probs=102.3
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEe-eccCC-C
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~-V~~~e-~ 126 (558)
|+++|+|.|+...+.|+|+|++|++|+..+.. +.+||||++++.+ .+.||+++++++||+|||+|.|. +...+ .
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~ 82 (128)
T cd08388 3 GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ 82 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence 67899999999999999999999999998876 8999999999965 46799999999999999999994 54322 3
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCC--CceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG--QRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~--~~~e~W~~L~~ 169 (558)
...|.|.|||+|.++ +++||++.|+|.++... +....|++|++
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 457999999999987 99999999999999665 56788999874
No 17
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=1.2e-20 Score=167.17 Aligned_cols=115 Identities=26% Similarity=0.376 Sum_probs=103.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 144 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf 144 (558)
|.|+|+|++|++|+..+..+.+||||+++++..+.+|+++. +++||+|||.|.|.+.. +..+.|.|+|||++..++++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE-DKKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecC-CCCCEEEEEEEeCCCCCCcc
Confidence 67999999999999999999999999999999889999875 58999999999999985 34568999999999877899
Q ss_pred cEEEEEecccccCCCceeeeeecCCC--CceEEEEEEEE
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITV 181 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k--~~GeL~LsL~y 181 (558)
||++.++|.++..+.....|++|... ..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998777778999999753 56999999986
No 18
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.84 E-value=1.7e-20 Score=168.04 Aligned_cols=117 Identities=25% Similarity=0.419 Sum_probs=105.3
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
.|+++|+|.|+...+.|+|+|++|++|+..+..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l 81 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL 81 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence 4788999999999999999999999999999889999999999964 5789999999999999999999987422
Q ss_pred CCceEEEEEeecCCC--C-CCccEEEEEecccccCCCceeeeeecC
Q 008661 126 SPNVLVIEVRDKDHF--V-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~--s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
....|.|.|||++.+ + +++||++.++|.++..+.....||+|.
T Consensus 82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred cCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 246899999999885 4 899999999999998888889999984
No 19
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.84 E-value=1.8e-21 Score=179.71 Aligned_cols=110 Identities=9% Similarity=-0.022 Sum_probs=89.2
Q ss_pred EEEEEEEEEeccCCCC----------------CCCCcceEEecccCCCCceeeEEEeEecCCCC-CCccCCCceeec-CC
Q 008661 174 RLHLAITVLEESAKQG----------------VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSV-SS 235 (558)
Q Consensus 174 eL~LsL~y~p~~~~l~----------------lsDPyVKv~L~~~~~~~krlkKKKT~VkK~Tl-NPvwN~E~F~Fe-p~ 235 (558)
+|+|+|+|.|.++++. ..|||||++| +..+++++||||+++++|+ ||+|| |+|.|. +.
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L---~~~~k~~~KkKT~v~k~t~~~P~fN-EsF~Fdv~~ 77 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGM---FSTGGLLYKKKTRLVKSSNGQVKWG-ETMIFPVTQ 77 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEE---EECCCcceeecCccEECCCCCceec-ceEEEeCCc
Confidence 6889999999887622 2578999999 4558899999999999996 69999 999999 55
Q ss_pred CCCCCCceEEEEEeccC--cccc-ceEEecC---CccccccCccccCCCCCcccceeec
Q 008661 236 EKSPKVADNFEPINIEG--QQET-GIWVHQP---GSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 236 e~l~~v~leveV~D~dG--~~e~-Gv~v~~p---gt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
+ +..+++.++|||++. .++. |.++.++ +.+..+||.+|+.+||||+||||.+
T Consensus 78 ~-~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 78 Q-EHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred h-hheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 4 567999999999985 5665 7663333 3334699999999999999999964
No 20
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=3.2e-20 Score=166.00 Aligned_cols=117 Identities=26% Similarity=0.502 Sum_probs=104.9
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC--CC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SP 127 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~ 127 (558)
|++.|++.|....+.|.|+|++|++|+.++..+.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus 3 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~ 82 (125)
T cd08386 3 GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQ 82 (125)
T ss_pred cEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCC
Confidence 678899999999999999999999999999899999999999954 5789999999999999999999854321 24
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
..|.|+|||++.++ +++||++.++|.++..+.....|+.|++
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 83 RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 58999999999987 8999999999999998888999999974
No 21
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.84 E-value=2.5e-20 Score=165.81 Aligned_cols=115 Identities=23% Similarity=0.361 Sum_probs=103.1
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
|+++|+|.|+...+.|.|+|++|++|+.++ ..+.+||||++++.+ .+.+|+++++++||+|||+|.|.+...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 568899999999999999999999999998 788999999999954 4679999999999999999999987532
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeec
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 167 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L 167 (558)
....|.|.|||++.++ +++||++.++|.++..+.....||+|
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 2458999999999887 89999999999999888788999987
No 22
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=4.5e-20 Score=164.34 Aligned_cols=113 Identities=29% Similarity=0.443 Sum_probs=103.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 144 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf 144 (558)
|+|+|++|++|+..+..+.+||||++++++ .+++|+++++++||+|||+|.|.+... ....|.|+|||++.+++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 789999999999999889999999999964 678999999999999999999998753 4568999999999888899
Q ss_pred cEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y 181 (558)
||++.++|.++..+.....|++|.++..|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 9999999999999989999999998889999998876
No 23
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=6.3e-20 Score=168.82 Aligned_cols=120 Identities=28% Similarity=0.503 Sum_probs=107.2
Q ss_pred ecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661 61 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 140 (558)
Q Consensus 61 Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~ 140 (558)
.....|.|+|+|++|++|+..+..|.+||||+++++...++|+++++++||.|||+|.|.+... ....|.|+|||++.+
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~ 88 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFF 88 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCC
Confidence 3457899999999999999999999999999999999999999999999999999999999752 356899999999998
Q ss_pred C-CCccEEEEEecccccC-----CCceeeeeecCCCCceEEEEEEEE
Q 008661 141 V-DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITV 181 (558)
Q Consensus 141 s-DDfIGev~IpL~eL~~-----~~~~e~W~~L~~k~~GeL~LsL~y 181 (558)
+ |++||++.++|.++.. ......|+.|.....|+|+|++++
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 7 9999999999999876 334567888888889999999986
No 24
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=3.1e-20 Score=167.38 Aligned_cols=116 Identities=27% Similarity=0.345 Sum_probs=102.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeecCCC--CC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHF--VD 142 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~~--sD 142 (558)
.|+|+|++|++|++.+..+.+||||++++++++++|+++++++||+|||.|.|.+.... ....|.|+|||++.+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999998899999999999999999999999999999999999987422 235899999999987 48
Q ss_pred CccEEEEEeccccc-CCCceeeeeecCCC-----CceEEEEEEEEE
Q 008661 143 DTLGDCTINISDLR-DGQRHDMWIPLQNI-----KIGRLHLAITVL 182 (558)
Q Consensus 143 DfIGev~IpL~eL~-~~~~~e~W~~L~~k-----~~GeL~LsL~y~ 182 (558)
++||++.++|.++. .+.....||+|+.. .+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 45667899999863 579999999875
No 25
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=2.9e-20 Score=165.81 Aligned_cols=115 Identities=31% Similarity=0.439 Sum_probs=100.6
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccC-C-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW-D- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~-e- 125 (558)
|+++++|.|+...+.|+|+|++|++|+.++..+.+||||++++.+ .+++|+++++++||+|||+|.|.+... +
T Consensus 3 G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l 82 (125)
T cd04031 3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETL 82 (125)
T ss_pred EEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHh
Confidence 678899999999999999999999999999889999999999975 577999999999999999999986431 1
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
....|.|+|||++.++ +++||++.++|.+.. ......||+|+
T Consensus 83 ~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 83 KERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 3468999999999987 899999999999843 33457899985
No 26
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.83 E-value=1.7e-20 Score=168.75 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=97.7
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~ 127 (558)
|++.|++.| ..+.|.|+|++|+||++++ .|.+||||+++|.+ .+.+|+++++++||+|||+|.|.+...+..
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 356677776 6789999999999999998 88999999999976 366999999999999999999998754445
Q ss_pred ceEEEEEeecCCCC--CCccEEEEEecccccCCCceeeeeec
Q 008661 128 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL 167 (558)
Q Consensus 128 ~tL~V~V~D~D~~s--DDfIGev~IpL~eL~~~~~~e~W~~L 167 (558)
..|.|.|||++... +++||++.|+|.++..+.....||.|
T Consensus 78 ~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 78 KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 67999999999874 68999999999999877778999986
No 27
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.83 E-value=5e-20 Score=164.11 Aligned_cols=117 Identities=26% Similarity=0.400 Sum_probs=105.0
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 127 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~ 127 (558)
|+++++|.|+...+.|.|+|++|++|+.++ ..+.+||||++++.+ ...+|+++++++||+|||+|.|.+.... ..
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~ 80 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQR 80 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcc
Confidence 568899999999999999999999999998 688999999999954 4679999999999999999999987532 23
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
..|.|.|||++.++ +++||++.++|.++........|++|++
T Consensus 81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred cEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 58999999999987 8999999999999999888899999973
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.83 E-value=6.5e-20 Score=162.16 Aligned_cols=115 Identities=34% Similarity=0.613 Sum_probs=104.0
Q ss_pred eEEEEEEEEecCCCCCCC------CCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC
Q 008661 66 AYARVEVVEASDMKPSDL------NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 139 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~------~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~ 139 (558)
|.|+|+|++|++|+.++. .|.+||||++++++..++|+++++++||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 579999999999998875 36899999999999999999999999999999999998742 45799999999998
Q ss_pred CCCCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661 140 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181 (558)
Q Consensus 140 ~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y 181 (558)
.++++||.+.++|.++..+...+.||+|.+...|+|+|.+.+
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 888999999999999988777899999998788999998864
No 29
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.83 E-value=4.6e-21 Score=177.47 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=92.6
Q ss_pred ceEEEEEEEEEeccCCC------------------CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec
Q 008661 172 IGRLHLAITVLEESAKQ------------------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~l------------------~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe 233 (558)
.|+|+|+|+|.+.++++ ..+|||||++| +.++++++|+||.++++++||+|| |.|.|.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l---~~~~~k~~kkkT~v~k~t~nPvfN-E~f~F~ 76 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTL---KHQNAKLKKKQTKRAKHKINPVWN-EMIMFE 76 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEE---EcCCcccceeccceeeCCCCCccc-cEEEEE
Confidence 48999999998877651 11699999999 445678899999999999999999 999999
Q ss_pred -CCCCCCCCceEEEEEeccCc--ccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661 234 -SSEKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 234 -p~e~l~~v~leveV~D~dG~--~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
+.+++...++.++|||+++. ++. |.. ....|.+ .+||.+|+.+||+|+||||.+
T Consensus 77 v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~-~~hW~~ml~~p~~~va~WH~L 137 (138)
T cd08407 77 LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTE-RQHWEEMLDNPRRQIAMWHQL 137 (138)
T ss_pred CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcH-HHHHHHHHhCCCCchhEEEEC
Confidence 98999999999999999943 443 544 2333443 589999999999999999975
No 30
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.83 E-value=9.6e-20 Score=208.62 Aligned_cols=230 Identities=17% Similarity=0.343 Sum_probs=178.0
Q ss_pred eeeec--cCCCCCccCCccHHHHHHHHHHHHHHhccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCC
Q 008661 2 TVKPI--FTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMK 79 (558)
Q Consensus 2 tlkPl--~t~G~DVm~iPGLs~fl~~lI~~al~~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~ 79 (558)
.++|+ .++|+|||+||||+.||+++|..+++.|+++|++++|++.+...+. -..+.|+|.|+|.+|++|.
T Consensus 378 ~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~--------s~~aIGVv~vkI~sa~~lk 449 (1227)
T COG5038 378 ILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD--------SGTAIGVVEVKIKSAEGLK 449 (1227)
T ss_pred EEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc--------cCCeeEEEEEEEeeccCcc
Confidence 67899 5679999999999999999999999999999999999999877662 3457899999999999999
Q ss_pred CCC--CCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCccEEEEEecccc
Q 008661 80 PSD--LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155 (558)
Q Consensus 80 ~~D--~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL 155 (558)
..+ .++..|||+.+.+.. ...+|+++++++||+|||+|.+.+.. ..+.|.|+|||++.++ |.++|.+.++|..|
T Consensus 450 ~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns--~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L 527 (1227)
T COG5038 450 KSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNS--FTDPLNLSLYDFNSFKSDKVVGSTQLDLALL 527 (1227)
T ss_pred cccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecc--cCCceeEEEEeccccCCcceeeeEEechHHh
Confidence 888 689999999999755 45699999999999999999999986 4678999999988887 99999999999998
Q ss_pred cCCCcee-eeeecC--CCCceEEEEEEEEEeccCCCC--------CCCC-------------------------cceEEe
Q 008661 156 RDGQRHD-MWIPLQ--NIKIGRLHLAITVLEESAKQG--------VDSP-------------------------CDGGTL 199 (558)
Q Consensus 156 ~~~~~~e-~W~~L~--~k~~GeL~LsL~y~p~~~~l~--------lsDP-------------------------yVKv~L 199 (558)
....... ..+.+. .+..|+|...+.|.|..+... +.|. ++.+++
T Consensus 528 ~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~ 607 (1227)
T COG5038 528 HQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYT 607 (1227)
T ss_pred hhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEe
Confidence 7654432 233332 346799999999988754310 0111 133333
Q ss_pred cccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661 200 NKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI 250 (558)
Q Consensus 200 ~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~ 250 (558)
+. + ..+-|...+.+-+|.|| +.+... -.......+.+.+.|.
T Consensus 608 ~~-----k--eV~st~~~k~t~~~~wn-~~~~~~-v~~~~ns~~~~~~~d~ 649 (1227)
T COG5038 608 NA-----K--EVYSTGKLKFTNHPSWN-LQYNVL-VTDRKNSSIKVVTFDV 649 (1227)
T ss_pred cc-----e--EEeccceeeeccCCcee-eecceE-eccCcceeEEEEeccc
Confidence 21 1 22234556888999999 554433 5555667777776664
No 31
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=6.2e-20 Score=167.54 Aligned_cols=109 Identities=28% Similarity=0.472 Sum_probs=98.2
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC---
Q 008661 67 YARVEVVEASD---MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 140 (558)
Q Consensus 67 ~L~VtVieArd---L~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~--- 140 (558)
.|.|+|++|++ |+.+|..|.+||||+|.+++++.+|+++++++||+|||+|.|.+.. ....|.|+|||++.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~--~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD--PCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC--CCCEEEEEEEECCCcccc
Confidence 38999999999 8889999999999999999999999999999999999999999975 345899999999987
Q ss_pred ----CCCccEEEEEecccccCCCceeeeeecCC------CCceEEEE
Q 008661 141 ----VDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHL 177 (558)
Q Consensus 141 ----sDDfIGev~IpL~eL~~~~~~e~W~~L~~------k~~GeL~L 177 (558)
+|++||++.|+|..+..+.....||+|.. +..|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 59999999999999999888899999984 34577764
No 32
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=9.3e-20 Score=164.18 Aligned_cols=112 Identities=30% Similarity=0.513 Sum_probs=99.5
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661 68 ARVEVVEASDMKPSD-LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 68 L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf 144 (558)
|+|+|++|++|++++ ..|.+||||+++++.. .++|+++++|+||+|||+|.|.+.. ....|.|.|||++.++ +++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~--~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR--TFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC--CCCEEEEEEEECCCCCCCce
Confidence 789999999999974 4678999999999764 6899999999999999999999985 3469999999999997 999
Q ss_pred cEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 181 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y 181 (558)
||.+.++|+++..+...+.||+|++. ..|+|+|++++
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999888888999999863 37999999864
No 33
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.82 E-value=1e-19 Score=162.62 Aligned_cols=115 Identities=35% Similarity=0.593 Sum_probs=102.6
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661 66 AYARVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 142 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~--~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D 142 (558)
|.|+|+|++|++|+..+. .+.+||||+++++..+++|+++++++||.|||+|.|.+.. ...+.|.|+|||++.++ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~-~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS-AQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecC-CCCCEEEEEEEECCCCCCC
Confidence 679999999999999998 8899999999999999999999999999999999999985 24579999999999986 9
Q ss_pred CccEEEEEecccccC---CCceeeeeecCCC-------CceEEEEEEEE
Q 008661 143 DTLGDCTINISDLRD---GQRHDMWIPLQNI-------KIGRLHLAITV 181 (558)
Q Consensus 143 DfIGev~IpL~eL~~---~~~~e~W~~L~~k-------~~GeL~LsL~y 181 (558)
++||++.++|.++.. ......||+|.+. ..|+|+|+++|
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999999873 3446899999864 47999999874
No 34
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.3e-21 Score=197.21 Aligned_cols=235 Identities=21% Similarity=0.223 Sum_probs=189.9
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccC--
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW-- 124 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~-- 124 (558)
.+.+||.+.|+.....+.++|..|.+|++++.++..|||+++.+++ .+++|++..+++||.|+|+..+.....
T Consensus 79 lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~ 158 (362)
T KOG1013|consen 79 LGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD 158 (362)
T ss_pred ccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence 5678999999999999999999999999999999999999999988 457899999999999998866654321
Q ss_pred CCCceEEEEEeecCCCC-CCccEEEEEecccccCCCce--eeeeecCC----------CCceEEEEEEEEEeccCC----
Q 008661 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN----------IKIGRLHLAITVLEESAK---- 187 (558)
Q Consensus 125 e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~--e~W~~L~~----------k~~GeL~LsL~y~p~~~~---- 187 (558)
-..+.+++.|+|.+.+. ++++|+..++|..|...+.. ..||.-.- ..+|+|.+++.|-.....
T Consensus 159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt 238 (362)
T KOG1013|consen 159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVT 238 (362)
T ss_pred hhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEE
Confidence 13568999999999998 89999999999998766542 33443211 357999999998665433
Q ss_pred ------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEecc-C-
Q 008661 188 ------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE-G- 252 (558)
Q Consensus 188 ------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d-G- 252 (558)
-+-+||||+.++. .+..+.-|+||.+.|+|+||.|| +.|.|+ ....|....+.+.|||++ |
T Consensus 239 ~iRc~~l~ssDsng~sDpyvS~~l~---pdv~~~fkkKt~~~K~t~~p~fd-~~~~~~i~pgdLa~~kv~lsvgd~~~G~ 314 (362)
T KOG1013|consen 239 IIRCSHLASSDSNGYSDPYVSQRLS---PDVGKKFKKKTQQKKKTLNPEFD-EEFFYDIGPGDLAYKKVALSVGDYDIGK 314 (362)
T ss_pred EEEeeeeeccccCCCCCccceeecC---CCcchhhcccCcchhccCCcccc-ccccccCCccchhcceEEEeecccCCCc
Confidence 1228999999995 45677778899999999999999 888888 778889999999999998 4
Q ss_pred cccc-ceE--EecCCccccccCccccCCCCCcccceeecCC
Q 008661 253 QQET-GIW--VHQPGSEVAQTWEPRKGKNRRLDTLVRRVPN 290 (558)
Q Consensus 253 ~~e~-Gv~--v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~ 290 (558)
.+.. |.. ....-+++.+||-.++.+++-+...|||+..
T Consensus 315 s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~ 355 (362)
T KOG1013|consen 315 SNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLET 355 (362)
T ss_pred CccCCCcccccccccchhhcCcccccccccccccccccccc
Confidence 3333 332 1223334569999999999999999999984
No 35
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2e-19 Score=168.38 Aligned_cols=117 Identities=30% Similarity=0.507 Sum_probs=102.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikk-TlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf 144 (558)
.|+|+|++|++|++++..|.+||||+++++++..+|+++.+ |+||+|||.|.|.+.. .....|.|+|||++..+ +++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~-~~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE-PFEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecC-ccCCeEEEEEEEecCCCCCCe
Confidence 38999999999999999999999999999999999999876 6999999999999874 23468999999999886 999
Q ss_pred cEEEEEecccccCC----CceeeeeecCCC-----------CceEEEEEEEEEec
Q 008661 145 LGDCTINISDLRDG----QRHDMWIPLQNI-----------KIGRLHLAITVLEE 184 (558)
Q Consensus 145 IGev~IpL~eL~~~----~~~e~W~~L~~k-----------~~GeL~LsL~y~p~ 184 (558)
||++.|+|.++..+ .....||+|.+. ..|+|+|+|+|...
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 99999999998643 446899999863 23999999999754
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=3.4e-19 Score=160.62 Aligned_cols=114 Identities=23% Similarity=0.406 Sum_probs=102.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp--~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf 144 (558)
|.|+|++|++|+. ..|.+||||+++++. .+++|+++++|+||.|||.|.|.+.. ....|.|+|||++.++ +++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 678999999999974 67899999999999999999999864 3568999999999987 999
Q ss_pred cEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEecc
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEES 185 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~ 185 (558)
||++.++|.++........|++|.+. ..|+|+|.+.|.+.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999999999988888899999853 479999999998765
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=2.8e-19 Score=159.94 Aligned_cols=112 Identities=29% Similarity=0.518 Sum_probs=100.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 145 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI 145 (558)
+|+|+|++|++|+.++..+.+||||+++++...++|+++++++||.|||+|.|.+... ....|.|+|||++.++ +++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 4899999999999999889999999999999899999999999999999999999853 3568999999999987 8999
Q ss_pred EEEEEecccccCCCceeeeeecCC---------CCceEEEEEE
Q 008661 146 GDCTINISDLRDGQRHDMWIPLQN---------IKIGRLHLAI 179 (558)
Q Consensus 146 Gev~IpL~eL~~~~~~e~W~~L~~---------k~~GeL~LsL 179 (558)
|++.++|.++..+.....||.|.+ ...|.|+|.|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999987777899999975 2458888876
No 38
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.80 E-value=6.9e-20 Score=169.01 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~ 126 (558)
|+++|+|.|++..+.|.|+|++|++|++++..|.+||||+++|.+ .+.+|+++++++||+|||+|.|.+...+ .
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~ 81 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ 81 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence 678999999999999999999999999999899999999999965 2568999999999999999999987533 3
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...|.|+|||+|.++ +++||++.|+... .++..++|..+..
T Consensus 82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 82 DLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred CcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 568999999999987 9999999998764 4555777877754
No 39
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=3e-19 Score=161.74 Aligned_cols=102 Identities=29% Similarity=0.486 Sum_probs=90.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe-C---C---eEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeec
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQL-G---P---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDK 137 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~L-g---p---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~ 137 (558)
.|+|+|++|++|+..+ .|.+||||+|++ + + ++++|+++++|+||+|||+|.|.+...+ ....|.|+|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 499999999998 3 1 3578999999999999999999998522 345799999999
Q ss_pred CCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 138 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 138 D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
|..+ +++||++.++|..+..++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9887 8999999999999999998999999975
No 40
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.80 E-value=1.1e-19 Score=168.21 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=98.3
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~--~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e 125 (558)
|++.|+|.|.+..+.|.|.|++|+||++++. .+.+||||+|+|.+ .+.||+++++++||+|||+|.|.++..+
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~ 81 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSEL 81 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHH
Confidence 6789999999999999999999999999984 35599999999976 3569999999999999999999998533
Q ss_pred -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
...+|.|+|||+|.++ +++||++.+++.. .+...++|..+.
T Consensus 82 L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 82 LAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred hCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 3558999999999998 9999999999985 444566777664
No 41
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=1.2e-18 Score=157.72 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=98.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661 65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 142 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D 142 (558)
...|+|+|++|++|+.. +.+||||+|+++. ...+|+++ +++||.|||+|.|.+... ....|.|.|||++.++ +
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCC-CcCEEEEEEEECCCCCCC
Confidence 35799999999999874 4789999999987 44688875 689999999999986542 2357999999999987 9
Q ss_pred CccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEec
Q 008661 143 DTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEE 184 (558)
Q Consensus 143 DfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~ 184 (558)
++||++.|+|..+..+...+.||+|.+. ..|+|+|+|+|.+.
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999999999988888999999753 35999999999864
No 42
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=1e-18 Score=164.83 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=102.4
Q ss_pred ceEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcc
Q 008661 65 VAYARVEVVEASDMKPSD------------------------------LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKW 113 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D------------------------------~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvW 113 (558)
.|.|.|+|++|++|+.+| ..|.+||||+|+++.. ..+|+++++++||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999988 2467999999999875 469999999999999
Q ss_pred ceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeecCC------CCceEEEEEEEEE
Q 008661 114 HEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHLAITVL 182 (558)
Q Consensus 114 nEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~------k~~GeL~LsL~y~ 182 (558)
||+|.|.+.. ..+.|.|.|||+|.+++++||.+.++|.++..+...+.|++|.+ ...|.|+|+++|.
T Consensus 86 nE~F~~~~~~--~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAH--YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccC--CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999864 34689999999999888999999999999998888999999964 2358999999883
No 43
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=5.8e-19 Score=159.01 Aligned_cols=110 Identities=30% Similarity=0.465 Sum_probs=96.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccE
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 146 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIG 146 (558)
+|+|+|++|++|+.+ .+||||+++++..+.+|+++++++||+|||+|.|.+... ....|.|+|||++.+++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceee
Confidence 489999999999887 799999999999999999999999999999999998642 456899999999988899999
Q ss_pred EEEEecccccCCC-----ceeeeeecCCC----CceEEEEEEEE
Q 008661 147 DCTINISDLRDGQ-----RHDMWIPLQNI----KIGRLHLAITV 181 (558)
Q Consensus 147 ev~IpL~eL~~~~-----~~e~W~~L~~k----~~GeL~LsL~y 181 (558)
++.++|.++.... ....||+|... ..|+|+|+|+|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999986532 35689999874 35999999987
No 44
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=5.4e-19 Score=159.74 Aligned_cols=114 Identities=33% Similarity=0.473 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 139 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-------k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~ 139 (558)
.|+|+|++|++|+.++..+.+||||++++.+. .++|+++++|+||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP--REHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC--CCCEEEEEEEECCC
Confidence 38999999999999998899999999999654 5799999999999999999999875 34689999999999
Q ss_pred CC-CCccEEEEEecccccCCCc------eeeeeecCCC-----CceEEEEEEEEE
Q 008661 140 FV-DDTLGDCTINISDLRDGQR------HDMWIPLQNI-----KIGRLHLAITVL 182 (558)
Q Consensus 140 ~s-DDfIGev~IpL~eL~~~~~------~e~W~~L~~k-----~~GeL~LsL~y~ 182 (558)
++ +++||++.+++.++..... ...||+|++. ..|+|+|++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 87 8999999999999876543 4689999852 479999999884
No 45
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.79 E-value=3.3e-19 Score=161.56 Aligned_cols=114 Identities=29% Similarity=0.438 Sum_probs=99.7
Q ss_pred CceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661 54 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 127 (558)
Q Consensus 54 ~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~ 127 (558)
+++|+|.|+...+.|.|+|++|++|++++..+.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 35799999999999999999999999999889999999999964 3679999999999999999999987432 24
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
..|.|+|||++..+ +++||++.+++.. .++....|+++..
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 68999999999887 8999999999986 3456678998854
No 46
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.79 E-value=7.7e-19 Score=166.33 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=102.5
Q ss_pred CCceeEeeecC------------CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccce
Q 008661 53 PGNWFSVDVKE------------PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE 115 (558)
Q Consensus 53 ~~l~fSL~Yd~------------~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnE 115 (558)
|.+.|+|.|.+ ..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|+++++|+||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 57889999998 5589999999999999999899999999999843 578999999999999999
Q ss_pred EEEEeeccC-C-CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 116 EFNIPISTW-D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 116 tF~F~V~~~-e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
+|.|.+... + ....|.|+|||++.++ +++||++.+++.++......+.|+.|.+
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999985421 1 2458999999999998 9999999999999987777888998865
No 47
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=2.5e-18 Score=152.11 Aligned_cols=112 Identities=30% Similarity=0.569 Sum_probs=100.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf 144 (558)
|.|.|+|++|++|+.++..+.+||||+++++...++|+++++++||.|||+|.|.+.. ....|.|+|||++.++ +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCce
Confidence 6799999999999999989999999999999888999999999999999999999864 3579999999999876 999
Q ss_pred cEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 181 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y 181 (558)
||++.++|.++..+ ...|+.|... ..|+|+|++.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998755 4679999753 47999999875
No 48
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.78 E-value=3.2e-18 Score=155.31 Aligned_cols=115 Identities=32% Similarity=0.561 Sum_probs=101.7
Q ss_pred ceEEEEEEEEecCCCCCCCC----------CCCCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661 65 VAYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 133 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D~~----------G~sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~ 133 (558)
.|.|+|+|++|++|+..+.. +.+||||+++++..+ .+|+++++|+||.|||+|.|.+.. ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 47899999999999988863 689999999998854 699999999999999999999973 4689999
Q ss_pred EeecCCCC-CCccEEEEEecccccC--CCceeeeeecCCCCceEEEEEEEEEec
Q 008661 134 VRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIKIGRLHLAITVLEE 184 (558)
Q Consensus 134 V~D~D~~s-DDfIGev~IpL~eL~~--~~~~e~W~~L~~k~~GeL~LsL~y~p~ 184 (558)
|||++.++ +++||.+.++|.++.. +...+.|++|+ ..|+|+|.++|...
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~ 131 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS 131 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence 99999887 8999999999999987 56689999998 47999999998753
No 49
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.78 E-value=1.9e-18 Score=155.06 Aligned_cols=111 Identities=26% Similarity=0.505 Sum_probs=97.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 145 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI 145 (558)
|.|+|++|++|++++..|.+||||+++++.. ..+|+++++++||.|||.|.|.+.. ....|.|.|||++.++ +++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCCCCCCCEE
Confidence 8899999999999999999999999999774 4799999999999999999999874 3468999999999987 9999
Q ss_pred EEEEEecccccCC-CceeeeeecCCC-----CceEEEEEEE
Q 008661 146 GDCTINISDLRDG-QRHDMWIPLQNI-----KIGRLHLAIT 180 (558)
Q Consensus 146 Gev~IpL~eL~~~-~~~e~W~~L~~k-----~~GeL~LsL~ 180 (558)
|++.+++..+... ...+.|++|++. ..|+|+|.++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999988654 347899999763 3799998875
No 50
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=4.9e-18 Score=153.41 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=102.0
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCC
Q 008661 64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 143 (558)
Q Consensus 64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDD 143 (558)
+..+|+|+|++|++|+..+..|.+||||+++++.+.++|+++++++||+|||.|.|.+.. ....|.|+|||++.++|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 357899999999999999989999999999999999999999999999999999998875 467899999999988899
Q ss_pred ccEEEEEecccccCCCceeeeeecCC-------CCceEEEEEEEEEec
Q 008661 144 TLGDCTINISDLRDGQRHDMWIPLQN-------IKIGRLHLAITVLEE 184 (558)
Q Consensus 144 fIGev~IpL~eL~~~~~~e~W~~L~~-------k~~GeL~LsL~y~p~ 184 (558)
+||.+.+++..+.. ....|++|+. ...|+|.|.+.+.+.
T Consensus 79 ~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 79 FLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred ceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999999998643 4456777742 356999999988764
No 51
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=2.5e-18 Score=152.69 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=100.6
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC--eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661 65 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 141 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp--~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s 141 (558)
.|.|+|+|++|++|+..+ ..+.+||||+++++. ..++|+++++++||.|||.|.|.+.. ..+.|.|+|||++.++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCC
Confidence 378999999999999765 456799999999987 78999999999999999999999873 4679999999999986
Q ss_pred -CCccEEEEEecccccCCCcee-eeeecC--CCCceEEEEEEEEEe
Q 008661 142 -DDTLGDCTINISDLRDGQRHD-MWIPLQ--NIKIGRLHLAITVLE 183 (558)
Q Consensus 142 -DDfIGev~IpL~eL~~~~~~e-~W~~L~--~k~~GeL~LsL~y~p 183 (558)
+++||.+.++|.++....... .|+.|. ++..|+|+++|+|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 999999999999998776654 444443 356899999999975
No 52
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.77 E-value=6.9e-19 Score=160.59 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=101.1
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~ 126 (558)
|++++++.|+...+.|.|+|++|++|+.++..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+.... .
T Consensus 2 G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~ 81 (136)
T cd08404 2 GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELE 81 (136)
T ss_pred CeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhC
Confidence 678899999999999999999999999999999999999999954 3578999999999999999999987432 3
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...|.|+|||++.++ +++||++.+++.. .+.....|++|..
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 82 DISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 458999999999997 9999999999998 3556788998864
No 53
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.77 E-value=7.4e-19 Score=160.21 Aligned_cols=116 Identities=25% Similarity=0.404 Sum_probs=100.2
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~- 126 (558)
|++.|+|.|.+..+.|.|+|++|++|+.++..+.+||||+|++.+ .+++|+++++++||.|||+|.|.+...+.
T Consensus 2 G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 81 (136)
T cd08402 2 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQ 81 (136)
T ss_pred cEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhC
Confidence 678899999999999999999999999999999999999999953 35789999999999999999999874222
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 170 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k 170 (558)
...|.|+|||++.++ +++||++.|++... +.....|++|...
T Consensus 82 ~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 82 KVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 348999999999988 89999999999864 4456778887643
No 54
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=6.3e-18 Score=154.44 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=99.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC--------CCceEEEEEeecC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--------SPNVLVIEVRDKD 138 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e--------~~~tL~V~V~D~D 138 (558)
+|+|+|++|++|+.+|..|.+||||+++++..+.+|+++++|+||.|||.|.|.+.... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 68999999999999999999999999999999999999999999999999999754211 2357999999999
Q ss_pred CCC-CCccEEEEE-eccccc---CCCceeeeeecCC--CCceEEEEEEEEEec
Q 008661 139 HFV-DDTLGDCTI-NISDLR---DGQRHDMWIPLQN--IKIGRLHLAITVLEE 184 (558)
Q Consensus 139 ~~s-DDfIGev~I-pL~eL~---~~~~~e~W~~L~~--k~~GeL~LsL~y~p~ 184 (558)
.++ |++||++.+ ++..+. .......|++|.. ...|+|+|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 987 899999987 444443 2456789999974 357999999999874
No 55
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=8.4e-19 Score=161.89 Aligned_cols=116 Identities=20% Similarity=0.367 Sum_probs=99.8
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
++++++|.|+...+.|.|+|++|+||+.++..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 467899999999999999999999999999999999999999965 2569999999999999999999998533
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...+|.|.|||++.++ +++||++.+++..... ...++|+.+..
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 3569999999999887 9999999999885432 23467887753
No 56
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=2.3e-18 Score=161.25 Aligned_cols=101 Identities=30% Similarity=0.363 Sum_probs=88.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeec------------cC-C-CC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIS------------TW-D-SP 127 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~------------~~-e-~~ 127 (558)
.|+|+|++|++|+. .+|.+||||+|++.+ .+.+|+++++|+||+|||+|.|.+. .. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999988 578999999999976 5779999999999999999999984 11 1 23
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCC-CceeeeeecCC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG-QRHDMWIPLQN 169 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~-~~~e~W~~L~~ 169 (558)
..|.|.|||++.++ ++|||++.|+|..+..+ .....||+|++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 57999999999986 99999999999999876 56789999975
No 57
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.77 E-value=1.1e-18 Score=158.64 Aligned_cols=115 Identities=24% Similarity=0.432 Sum_probs=98.6
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~ 126 (558)
|+++|++.|.+..+.|+|+|++|++|++++..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+.... .
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 568899999999999999999999999999999999999999853 3679999999999999999999986422 2
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...|.|+|||++.++ +++||++.+++.. .+.....|+++..
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 347999999999998 9999999999873 3445677887743
No 58
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1e-17 Score=150.07 Aligned_cols=115 Identities=29% Similarity=0.501 Sum_probs=100.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 142 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D 142 (558)
.|+|+|++|++|+..+..+.+||||++++.+ ..++|+++++++||.|||+|.|.+... ....|.|+|||++.++ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 5899999999999999999999999999864 467999999999999999999999853 4568999999999986 8
Q ss_pred CccEEEEEecccccC---CCceeeeeecCCCCceEEEEEEEEEec
Q 008661 143 DTLGDCTINISDLRD---GQRHDMWIPLQNIKIGRLHLAITVLEE 184 (558)
Q Consensus 143 DfIGev~IpL~eL~~---~~~~e~W~~L~~k~~GeL~LsL~y~p~ 184 (558)
++||++.++|..+.. +...+.|++|.+ .|+|+|.++|...
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEeee
Confidence 999999999998643 345789999985 7999999998654
No 59
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.76 E-value=1.1e-18 Score=159.01 Aligned_cols=115 Identities=26% Similarity=0.390 Sum_probs=99.4
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~ 126 (558)
|+++|+|.|++..+.|.|+|++|++|+.++..+.+||||++++.+ .+++|+++++++||.|||+|.|.+.... .
T Consensus 2 G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~ 81 (136)
T cd08405 2 GELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLR 81 (136)
T ss_pred cEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhC
Confidence 678999999999999999999999999999899999999999843 3578999999999999999999986422 2
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...|.|+|||++.++ +++||++.+++... +...+.|++|..
T Consensus 82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 82 ETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 458999999999987 89999999999986 444667777653
No 60
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.76 E-value=2.9e-18 Score=162.30 Aligned_cols=97 Identities=34% Similarity=0.587 Sum_probs=89.7
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661 64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 142 (558)
Q Consensus 64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D 142 (558)
..|.|+|+|++|.+|..+|..+++||||.+.+++++.+|+++.+++||+|||.|.|.+.. ....|.+.|||+|.++ |
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d--~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD--PNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC--CCceEEEEEEeCCCCCcc
Confidence 468899999999999999988999999999999999999999999999999999999996 5679999999999999 9
Q ss_pred CccEEEEEecccccCCCcee
Q 008661 143 DTLGDCTINISDLRDGQRHD 162 (558)
Q Consensus 143 DfIGev~IpL~eL~~~~~~e 162 (558)
||||++.|+|..+...+...
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999987654443
No 61
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.76 E-value=5.3e-18 Score=153.30 Aligned_cols=120 Identities=38% Similarity=0.549 Sum_probs=105.6
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~ 127 (558)
|.+.+++.|.. +.|+|+|++|++|+..+..+.+||||++++.+ ..++|++++++++|.|||+|.|.+...+..
T Consensus 2 g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~ 79 (131)
T cd04026 2 GRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKD 79 (131)
T ss_pred cEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcC
Confidence 56678888877 88999999999999988888999999999964 678999999999999999999998753345
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 175 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL 175 (558)
..|.|+|||++.++ +++||++.++|.++... ..+.||+|.+...|+.
T Consensus 80 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 80 RRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 68999999999886 89999999999999754 6789999998888864
No 62
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.76 E-value=4.1e-19 Score=163.87 Aligned_cols=112 Identities=10% Similarity=0.120 Sum_probs=89.5
Q ss_pred eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661 173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS 235 (558)
Q Consensus 173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~ 235 (558)
|+|+|+|+|.+...+ .+.+|||||++|.+ .+++..|+||.++++++||+|| |.|.|. +.
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~---~~~~~~k~kT~v~k~t~nP~~n-E~f~F~v~~ 77 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQ---DGRKISKKKTSVKRDDTNPIFN-EAMIFSVPA 77 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEe---CCccccccCCccccCCCCCeec-eeEEEECCH
Confidence 788888888876654 23379999999954 3566778899999999999999 999999 88
Q ss_pred CCCCCCceEEEEEeccC--cccc-ceEEecC--CccccccCccccCCCCCcccceeec
Q 008661 236 EKSPKVADNFEPINIEG--QQET-GIWVHQP--GSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 236 e~l~~v~leveV~D~dG--~~e~-Gv~v~~p--gt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
+++....+.|+|||++. ..+. |-.+.++ .++..+||.+|+.+||+++++||.+
T Consensus 78 ~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l 135 (136)
T cd08406 78 IVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPL 135 (136)
T ss_pred HHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeec
Confidence 88999999999999984 3333 5442222 1233589999999999999999975
No 63
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.76 E-value=1.9e-18 Score=158.88 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~- 126 (558)
|++.++|.|++..+.|.|+|++|+||++.+ .+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+.
T Consensus 2 G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~ 80 (137)
T cd08409 2 GDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLD 80 (137)
T ss_pred cEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhC
Confidence 568899999999999999999999999998 78899999999965 36699999999999999999999975333
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...|.|+|||++.++ +++||++.|+......+...++|..+..
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 81 TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 368999999999887 9999999999876666666788887754
No 64
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=6.8e-18 Score=147.56 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=90.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccE
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 146 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIG 146 (558)
.|.|+|++|++|+..+..+.+||||+++++.+.++|+++++|+||+|||.|.|.+... ....|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCccE
Confidence 3899999999999999889999999999999999999999999999999999999863 35689999999987 88999
Q ss_pred EEEEecccccCCC--ceeeeeecCC
Q 008661 147 DCTINISDLRDGQ--RHDMWIPLQN 169 (558)
Q Consensus 147 ev~IpL~eL~~~~--~~e~W~~L~~ 169 (558)
++.++|.++.... ..+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999987654 5789999985
No 65
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=5.9e-18 Score=150.00 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=84.2
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661 66 AYARVEVVEASDMKPSDLN----GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 141 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~----G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s 141 (558)
|+|.|+|++|++|++.+.. +.+||||+|+++..++||+++++++||+|||.|.|.+...+....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999988732 358999999999999999999999999999999999875444568999999999997
Q ss_pred -CCccEEEEEecccccCCCc
Q 008661 142 -DDTLGDCTINISDLRDGQR 160 (558)
Q Consensus 142 -DDfIGev~IpL~eL~~~~~ 160 (558)
|++||++.++|.+|..++.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 9999999999999876543
No 66
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.75 E-value=2.7e-18 Score=158.62 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=96.7
Q ss_pred CceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCC-CCccceEEEEeeccCCCC
Q 008661 54 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTL-SPKWHEEFNIPISTWDSP 127 (558)
Q Consensus 54 ~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTl-NPvWnEtF~F~V~~~e~~ 127 (558)
++.|+|.|.+..+.|+|.|++|+||+++...+.+||||+|+|.. .+.||+++++|+ ||+|||+|.|.++..+..
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 57899999999999999999999999986677789999999943 578999999996 699999999999864445
Q ss_pred ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
..|.|+|||++..+ +++||++.++.... .+...++|.++.
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 58999999999987 99999999999864 233456777664
No 67
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.75 E-value=5.1e-18 Score=149.74 Aligned_cols=102 Identities=27% Similarity=0.521 Sum_probs=90.8
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcc-ceEEEEeeccCC-CCceEEEEEeecCCCC-CC
Q 008661 68 ARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKW-HEEFNIPISTWD-SPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 68 L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp~k~KTkVikkTlNPvW-nEtF~F~V~~~e-~~~tL~V~V~D~D~~s-DD 143 (558)
|.|+|++|++|+.++. .+.+||||++++++.+++|+++++++||.| ||+|.|.+...+ ....|.|+|||++.++ ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 789999999999999999999999999999 999999997533 2468999999999987 89
Q ss_pred ccEEEEEecccccC---CCceeeeeecCC
Q 008661 144 TLGDCTINISDLRD---GQRHDMWIPLQN 169 (558)
Q Consensus 144 fIGev~IpL~eL~~---~~~~e~W~~L~~ 169 (558)
+||++.++|.++.. ......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999977 345789999864
No 68
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2e-17 Score=148.91 Aligned_cols=116 Identities=22% Similarity=0.364 Sum_probs=102.6
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccC-CCCceEEEEEeecCCCC-CCccEEEE
Q 008661 72 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DDTLGDCT 149 (558)
Q Consensus 72 VieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~-e~~~tL~V~V~D~D~~s-DDfIGev~ 149 (558)
|++|++|+. ..+.+||||+|+++..+++|+++++++||+|||+|.|.+... .....|.|+|||++.++ +++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 678999999999998899999999999999999999999753 24679999999999987 89999999
Q ss_pred EecccccCCCceeeeeecCCC----CceEEEEEEEEEeccCCCC
Q 008661 150 INISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLEESAKQG 189 (558)
Q Consensus 150 IpL~eL~~~~~~e~W~~L~~k----~~GeL~LsL~y~p~~~~l~ 189 (558)
++|.++..+.....|++|.+. ..|+|+++++|.+.....+
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 999999988888999999642 3589999999999875443
No 69
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=1.2e-17 Score=149.51 Aligned_cols=115 Identities=32% Similarity=0.412 Sum_probs=100.7
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeecc-CC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST-WD- 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~-~e- 125 (558)
|+++++|.|+...+.|+|+|++|++|+..+..+.+||||++++.+ .+.+|+++++++||.|||+|.|.... .+
T Consensus 2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~ 81 (123)
T cd04035 2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI 81 (123)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence 678899999999999999999999999999889999999999853 46899999999999999999996332 11
Q ss_pred CCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeec
Q 008661 126 SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 167 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L 167 (558)
....|.|+|||++.+++++||++.++|.+|..++..+.|+.|
T Consensus 82 ~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 82 QRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 246899999999988888999999999999988888877754
No 70
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.75 E-value=3.7e-18 Score=153.50 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=103.1
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~ 126 (558)
|+++|+|.|+...+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+.... .
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 567899999999999999999999999998889999999999965 3679999999999999999999987532 2
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 171 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~ 171 (558)
...|.|+|||.+.++ +++||.+.++|.+ .+...+.|++|....
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 468999999999876 8999999999999 566789999997654
No 71
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.75 E-value=3.1e-18 Score=156.75 Aligned_cols=116 Identities=21% Similarity=0.287 Sum_probs=97.3
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~- 126 (558)
|+++|+|.|.+..+.|.|+|++|++|+.++..|.+||||++++.+ .+.+|+++++|+||.|||+|.|.+...+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 568899999999999999999999999999999999999999843 35799999999999999999999864222
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
...|.|+|||++..+ +++||++.|....... ...++|+.|..
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 347999999999887 9999999876543322 23577888765
No 72
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.6e-17 Score=150.22 Aligned_cols=109 Identities=33% Similarity=0.534 Sum_probs=95.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC------
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF------ 140 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~------ 140 (558)
.|+|+|++|++|+..|..|.+||||+++++...++|+++++++||.|||+|.|.+.. ....|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~--~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN--SSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC--CCCEEEEEEEECCCCcccccc
Confidence 689999999999999988999999999999889999999999999999999998864 246899999999852
Q ss_pred ------CCCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEE
Q 008661 141 ------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAI 179 (558)
Q Consensus 141 ------sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL 179 (558)
.+++||++.++|.++. .....||.|++. ..|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 3899999999999875 346789999862 468988864
No 73
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.74 E-value=9.2e-18 Score=148.30 Aligned_cols=100 Identities=27% Similarity=0.533 Sum_probs=87.7
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeecCC
Q 008661 66 AYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDH 139 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~ 139 (558)
|+|+|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++|+||+|||+|.|.+...+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999854 4689999999999999999999886432 34689999999999
Q ss_pred CC-CCccEEEEEecccccCCCceeeeeecC
Q 008661 140 FV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 140 ~s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
++ |++||++.++|.++.. ...|++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 97 9999999999999973 45688876
No 74
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.74 E-value=1.2e-17 Score=152.29 Aligned_cols=106 Identities=26% Similarity=0.385 Sum_probs=94.9
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCccceEEEEeeccC
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTW 124 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------~k~KTkVikkTlNPvWnEtF~F~V~~~ 124 (558)
.|++.+++.|+...+.|+|+|++|++|+.++..+.+||||+|++.+ ..++|+++++|+||+|||+|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 3678899999999999999999999999999889999999999963 468999999999999999999998742
Q ss_pred C---CCceEEEEEeecCCCC-CCccEEEEEecccccC
Q 008661 125 D---SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 157 (558)
Q Consensus 125 e---~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~ 157 (558)
+ ....|.|+|||++.++ +++||++.++|.++..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 1 2458999999999998 9999999999999864
No 75
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=3.2e-17 Score=147.55 Aligned_cols=109 Identities=24% Similarity=0.432 Sum_probs=94.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC-CeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC---CC
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV---DD 143 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lg-p~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s---DD 143 (558)
|+|+|++|++|+.++..+.+||||++++. ...++|+++++++||.|||+|.|.+.. .+.|.|+|||++.++ ++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 89999999999999989999999999996 578899999999999999999999974 579999999999886 47
Q ss_pred ccEEEEEecccccCCC-ceeeeeecCCC-------CceEEEEEE
Q 008661 144 TLGDCTINISDLRDGQ-RHDMWIPLQNI-------KIGRLHLAI 179 (558)
Q Consensus 144 fIGev~IpL~eL~~~~-~~e~W~~L~~k-------~~GeL~LsL 179 (558)
+||++.+++.++.... ....|++|+.. ..|+|.+.+
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999986544 34779999642 258888775
No 76
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-17 Score=182.59 Aligned_cols=176 Identities=26% Similarity=0.358 Sum_probs=149.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
..|.|.|.+|+||++.+..|.+||||.|.+.. ...+|.++.+++.|.|.|+|.|.++. .-+.|.|.|||.| ++ |+
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d-~~~D~ 81 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRD-LKRDD 81 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccc-ccccc
Confidence 46899999999999999999999999999988 67899999999999999999999986 5679999999999 76 99
Q ss_pred ccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEeccCCC-----------------CCCCCcceEEecc
Q 008661 144 TLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQ-----------------GVDSPCDGGTLNK 201 (558)
Q Consensus 144 fIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~~~l-----------------~lsDPyVKv~L~~ 201 (558)
.||.+.|.-.+|......+.|+.|+.. ..|+|+|+|.+.+....- +-.|||+++..-
T Consensus 82 ~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~- 160 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLC- 160 (800)
T ss_pred ccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeec-
Confidence 999999999999887788999999863 469999999998865331 117999999882
Q ss_pred cCCCCceeeEEEeEecCCCCCCccCCCceeec-CCC-------------CCCCCceEEEEEe
Q 008661 202 EGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSE-------------KSPKVADNFEPIN 249 (558)
Q Consensus 202 ~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e-------------~l~~v~leveV~D 249 (558)
++.+.+.++|.++++|.||.|| |.|+|+ -.+ +.....+.+++|+
T Consensus 161 ---g~~~~~~~~T~~~kkt~~p~~~-Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~ 218 (800)
T KOG2059|consen 161 ---GPSKLKEKKTKVKKKTTNPQFD-EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWN 218 (800)
T ss_pred ---ccchhhccccceeeeccCcchh-hheeeeeccccccccchhcCcccCCceeeEEEeecc
Confidence 3455666899999999999999 999999 221 2245677888887
No 77
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.2e-16 Score=146.23 Aligned_cols=99 Identities=24% Similarity=0.332 Sum_probs=86.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661 65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 144 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf 144 (558)
++.|.|+|++|++|+..+ ..||||+|.++.++.+|+++++ .||.|||+|.|.+.. ....|.|+|||+|.++||+
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIWDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcCCCc
Confidence 368999999999997644 4699999999999999999988 499999999999975 3456999999999888999
Q ss_pred cEEEEEecccccCCCce--eeeeecCC
Q 008661 145 LGDCTINISDLRDGQRH--DMWIPLQN 169 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~--e~W~~L~~ 169 (558)
||++.|+|.++..+... ..||+|.+
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999999866554 88999986
No 78
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=6.7e-17 Score=151.92 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=89.9
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEE
Q 008661 67 YARVEVVEASDMKPSDLNG--------------LADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVI 132 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G--------------~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V 132 (558)
.|.|+|++|++|+.+|..+ .+||||+|.+++.+.+|+++++++||+|||+|.|.+......+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999998543 68999999999999999999999999999999999764334679999
Q ss_pred EEeecCCCC-CCccEEEEEecccccCCCc-------eeeeeecCCCCce
Q 008661 133 EVRDKDHFV-DDTLGDCTINISDLRDGQR-------HDMWIPLQNIKIG 173 (558)
Q Consensus 133 ~V~D~D~~s-DDfIGev~IpL~eL~~~~~-------~e~W~~L~~k~~G 173 (558)
+|||+|..+ |++||.+.++|.++...+. ...|+.|.+..++
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 999999996 9999999999999876542 2467776554444
No 79
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=2.2e-16 Score=141.42 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=94.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCccceEEEEeeccCC--CCceEEEEEeecCCCC-
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV- 141 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikk-TlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~~s- 141 (558)
|.|.|+|++|++|+..+..+.+||||+++++...++|+++++ ++||.|||+|.|.+.... ....|.|+|||.+.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 679999999999999998899999999999988889999884 999999999999998632 2468999999999987
Q ss_pred CCccEEEEEecccccCCCceeeeeecCCC
Q 008661 142 DDTLGDCTINISDLRDGQRHDMWIPLQNI 170 (558)
Q Consensus 142 DDfIGev~IpL~eL~~~~~~e~W~~L~~k 170 (558)
+++||.+.++|.++..++..+.|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999888888999999873
No 80
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=8.3e-17 Score=144.17 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=95.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeec-CCCCCccceEEEEeeccCC---CCceEEEEEeecCCCC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQR-KTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 141 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVik-kTlNPvWnEtF~F~V~~~e---~~~tL~V~V~D~D~~s 141 (558)
+|+|+|++|++|+..+..+.+||||+|++++ .+++|+++. ++.||.|||.|.|.+.... ....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999998889999999999988 888999975 6899999999999998632 2578999999999976
Q ss_pred -CCccEEEEEecccccCCCc-----eeeeeecCC---CCceEEEE
Q 008661 142 -DDTLGDCTINISDLRDGQR-----HDMWIPLQN---IKIGRLHL 177 (558)
Q Consensus 142 -DDfIGev~IpL~eL~~~~~-----~e~W~~L~~---k~~GeL~L 177 (558)
+++||++.++|.++..+.. ...||+|.. +..|.|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9999999999999986654 378999975 35688764
No 81
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.69 E-value=2e-17 Score=152.02 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=88.5
Q ss_pred ceEEEEEEEEEeccCC---------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661 172 IGRLHLAITVLEESAK---------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS 235 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~---------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~ 235 (558)
.|+|+|+|+|.+..++ .+..|||||+++... +++.+++||.++++++||+|| |.|.|. +.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~---~~~~~~~kT~v~~~~~nP~fn-E~F~f~i~~ 76 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIH---NKVVKTKKTEVVDGAASPSFN-ESFSFKVTS 76 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEEC---CEEeeeeecccEeCCCCCccc-ceEEEECCH
Confidence 3778888887765543 123799999999543 456678899999999999999 999999 77
Q ss_pred CCCCCCceEEEEEeccCccc--c-ceEEecC----CccccccCccccCCCCCcccceeecC
Q 008661 236 EKSPKVADNFEPINIEGQQE--T-GIWVHQP----GSEVAQTWEPRKGKNRRLDTLVRRVP 289 (558)
Q Consensus 236 e~l~~v~leveV~D~dG~~e--~-Gv~v~~p----gt~~~~hW~~~l~~~r~~~~q~~~~~ 289 (558)
+++....+.|+||++++... . |-...++ .+...+||.+|+.+||+++++||.+|
T Consensus 77 ~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l~ 137 (137)
T cd08409 77 RQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHALG 137 (137)
T ss_pred HHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeCC
Confidence 88888999999999985333 2 5443332 12334899999999999999999875
No 82
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.69 E-value=1.1e-16 Score=150.72 Aligned_cols=102 Identities=32% Similarity=0.559 Sum_probs=90.5
Q ss_pred ecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-----------------------------EEEeeeecCCCCC
Q 008661 61 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-----------------------------RFRTKTQRKTLSP 111 (558)
Q Consensus 61 Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-----------------------------k~KTkVikkTlNP 111 (558)
+.++.+.|.|+|++|++|+++|..|.+||||+|++.+. .++|+++++|+||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 56788999999999999999999999999999999641 3689999999999
Q ss_pred ccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeec
Q 008661 112 KWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 167 (558)
Q Consensus 112 vWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L 167 (558)
.|||+|.|.+... ....|.|+|||++ +++||++.++|.++.. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999999753 3568999999998 8999999999999984 457999987
No 83
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-17 Score=176.19 Aligned_cols=118 Identities=34% Similarity=0.517 Sum_probs=105.5
Q ss_pred eEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEE
Q 008661 57 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 131 (558)
Q Consensus 57 fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~ 131 (558)
+-|........|+|+|.+|+||.+||.+|.+||||++.|-| .+++|++++.||||+|||+|.|.+.+.+..+.|.
T Consensus 171 l~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRls 250 (683)
T KOG0696|consen 171 LYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLS 250 (683)
T ss_pred EEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeE
Confidence 44444557789999999999999999999999999999966 4779999999999999999999999877888999
Q ss_pred EEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661 132 IEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 175 (558)
Q Consensus 132 V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL 175 (558)
|+|||||+.+ +||||...+.+++|... +.+.||.|..+..|+-
T Consensus 251 iEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGEy 294 (683)
T KOG0696|consen 251 IEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGEY 294 (683)
T ss_pred EEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCce
Confidence 9999999998 99999999999999765 6789999988777763
No 84
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=2.2e-16 Score=139.16 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=87.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC---CCceEEEEEeecCCCC
Q 008661 65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 141 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e---~~~tL~V~V~D~D~~s 141 (558)
...|+|+|++|++|+ .+.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 457999999999998 578999999999999999999999999999999999975321 2458999999999987
Q ss_pred -CCccEEEEEecccccCCC---ceeeeeecCC
Q 008661 142 -DDTLGDCTINISDLRDGQ---RHDMWIPLQN 169 (558)
Q Consensus 142 -DDfIGev~IpL~eL~~~~---~~e~W~~L~~ 169 (558)
+++||++.++|..+..+. ....|++|..
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 899999999999996653 3578999863
No 85
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3.2e-16 Score=138.00 Aligned_cols=108 Identities=38% Similarity=0.621 Sum_probs=94.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 145 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI 145 (558)
|+|+|++|++|+..+..+.+||||++++.. ..++|+++.++++|.|||+|.|.+... ..+.|.|+|||++.++ +++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 579999999999998888999999999965 557999999999999999999998752 4578999999999987 9999
Q ss_pred EEEEEecccccCCCceeeeeecCCC---CceEEE
Q 008661 146 GDCTINISDLRDGQRHDMWIPLQNI---KIGRLH 176 (558)
Q Consensus 146 Gev~IpL~eL~~~~~~e~W~~L~~k---~~GeL~ 176 (558)
|++.+++.++..+.....|++|.+. ..|.|.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 9999999999888889999999853 345554
No 86
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3.5e-16 Score=140.76 Aligned_cols=107 Identities=30% Similarity=0.419 Sum_probs=94.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
|.|+|+|++|++|+..+..+.+||||+++++. ...+|++++++.||.|||+|.|.+.. ..+.|.|+|||++.++ ++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS--PNQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecC--CCCEEEEEEEECCCCCCCC
Confidence 67999999999999999889999999999976 57899999999999999999998875 3468999999999987 88
Q ss_pred ccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661 144 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 175 (558)
Q Consensus 144 fIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL 175 (558)
+||++.++|.++..+ ..+.||.|-+...+.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL 109 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence 999999999999876 6688888876555544
No 87
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=2.5e-16 Score=144.08 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=83.6
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661 62 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 141 (558)
Q Consensus 62 d~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s 141 (558)
....+.|+|+|++|++|+ .+..+.+||||+|+++..+++|+++++++||+|||+|.|..........|.|+|||++.++
T Consensus 24 ~~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 456799999999999997 4677889999999999899999999999999999999997544345679999999999997
Q ss_pred -CCccEEEEEeccccc
Q 008661 142 -DDTLGDCTINISDLR 156 (558)
Q Consensus 142 -DDfIGev~IpL~eL~ 156 (558)
|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 999999999999655
No 88
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=2.7e-16 Score=144.83 Aligned_cols=102 Identities=28% Similarity=0.438 Sum_probs=91.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC----CeEEEeeeecCCCCCccceEEEEeeccCC--------------CCce
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLG----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SPNV 129 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lg----p~k~KTkVikkTlNPvWnEtF~F~V~~~e--------------~~~t 129 (558)
|+|+|++|++|+.+ ..+.+||||+++++ ..+++|++++++.||.|||+|.|.+.... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 78999999999998 67889999999999999999999987531 3458
Q ss_pred EEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661 130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 170 (558)
Q Consensus 130 L~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k 170 (558)
|.|+|||++.++ ++|||++.++|.++........||+|++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999986 99999999999999877788999999874
No 89
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.67 E-value=6.7e-16 Score=135.96 Aligned_cols=108 Identities=32% Similarity=0.450 Sum_probs=87.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCC-CceEEEEEeecCCCC-CCc
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~-~~tL~V~V~D~D~~s-DDf 144 (558)
|+|+|++|++|+.. +.+||||+++++.. .++|+++++ +||.|||+|.|.+...+. ...|.|.+||.+... +.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999874 579999999 999999999999986332 357888889887665 556
Q ss_pred cEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661 145 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 181 (558)
Q Consensus 145 IGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y 181 (558)
+|.+ +|..+..+...+.||+|++. ..|+|+|.+.|
T Consensus 78 ~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6655 55555557778999999863 36999999976
No 90
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=6.4e-16 Score=136.73 Aligned_cols=100 Identities=24% Similarity=0.445 Sum_probs=87.8
Q ss_pred CCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccC-CCc
Q 008661 83 LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD-GQR 160 (558)
Q Consensus 83 ~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~-~~~ 160 (558)
.+|.+||||+++++. ..++|+++++++||.|||.|.|.+... ....|.|.|||++.+++++||.+.++|.++.. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 478899999999987 467999999999999999999998752 45689999999998889999999999999854 344
Q ss_pred eeeeeecCCCCceEEEEEEEEEe
Q 008661 161 HDMWIPLQNIKIGRLHLAITVLE 183 (558)
Q Consensus 161 ~e~W~~L~~k~~GeL~LsL~y~p 183 (558)
...||+|.+...|+|+|++.|.|
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 68999999878899999999987
No 91
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.66 E-value=1.4e-15 Score=143.81 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=95.4
Q ss_pred EEEEEEEecC--CCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCccceEEEEeeccCC-------CCceEEEE
Q 008661 68 ARVEVVEASD--MKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-------SPNVLVIE 133 (558)
Q Consensus 68 L~VtVieArd--L~~~D~~G~sDPYVkV~L-----gp~k~KTkVikkTlNPvWnEtF~F~V~~~e-------~~~tL~V~ 133 (558)
..++|..|++ |+..+..+.+||||++++ .+++.||+++++|+||+|||+|.|.+.... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3445555555 778887889999999997 236899999999999999999999997421 14579999
Q ss_pred EeecCCC-C-CCccEEEEEecccccCCCceeeeeecCC---CCceEEEEEEEEEec
Q 008661 134 VRDKDHF-V-DDTLGDCTINISDLRDGQRHDMWIPLQN---IKIGRLHLAITVLEE 184 (558)
Q Consensus 134 V~D~D~~-s-DDfIGev~IpL~eL~~~~~~e~W~~L~~---k~~GeL~LsL~y~p~ 184 (558)
|||++.+ + |++||++.++|..+........|++|.. ...|.|++.++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 9999986 4 9999999999999988777778999874 346999999988653
No 92
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=7.8e-17 Score=148.79 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=86.3
Q ss_pred eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661 173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS 235 (558)
Q Consensus 173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~ 235 (558)
|+|+++|.|.+..++ .+..|||||+++.+. .++++.++||.++++++||+|| |.|.|. +.
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~--~~~~~~~~kT~v~~~t~nPvfn-EtF~f~i~~ 78 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS--DGQEISKSKTSIRRGQPDPEFK-ETFVFQVAL 78 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC--CCcceeeccceeecCCCCCcEe-eeEEEECCH
Confidence 456666666554433 234799999999543 2345678899999999999999 999999 88
Q ss_pred CCCCCCceEEEEEeccC--cccc-ceE-E--ecCCccccccCccccCCCCCcccceeec
Q 008661 236 EKSPKVADNFEPINIEG--QQET-GIW-V--HQPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 236 e~l~~v~leveV~D~dG--~~e~-Gv~-v--~~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
+++...++.|+|||+++ .++. |-. + ...|.+...||.+|+.+||+|+++||.+
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l 137 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL 137 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeec
Confidence 88999999999999984 3333 533 3 2334444589999999999999999964
No 93
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=6.5e-16 Score=139.52 Aligned_cols=115 Identities=29% Similarity=0.391 Sum_probs=92.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k--~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
.|+|.|++|++|+.++..+.+||||++++++.. .+|+++++++||.|||+|.|.+.. .....|.|+|||++.++ ++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~-~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATL-PGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecC-CCCCEEEEEEEECCCCCCCc
Confidence 389999999999999999999999999998854 578889999999999999998764 24568999999999987 99
Q ss_pred ccEEEEEecccccCCCceeeeeecCC--CCceEEEEEEEEEe
Q 008661 144 TLGDCTINISDLRDGQRHDMWIPLQN--IKIGRLHLAITVLE 183 (558)
Q Consensus 144 fIGev~IpL~eL~~~~~~e~W~~L~~--k~~GeL~LsL~y~p 183 (558)
+||++.++|.+... ..+..|.-+.. ...|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFF-SKHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeeccccc-chHHHhccCCCcccccCceecCcccCc
Confidence 99999999998764 23333443332 24677777666554
No 94
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.7e-15 Score=141.46 Aligned_cols=92 Identities=32% Similarity=0.611 Sum_probs=84.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 144 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf 144 (558)
|.|+|+|++|++|+..+. +.+||||+++++.+.++|+++++++||+|||+|.|.+.. ....|.|+|||++.++ |++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~--~~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN--PMAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC--CCCEEEEEEEECCCCCCCCE
Confidence 789999999999999887 899999999999999999999999999999999999986 3678999999999998 999
Q ss_pred cEEEEEecccccCCCc
Q 008661 145 LGDCTINISDLRDGQR 160 (558)
Q Consensus 145 IGev~IpL~eL~~~~~ 160 (558)
||.+.++|.++.....
T Consensus 79 iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 79 MGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEEEEHHHhhhhhh
Confidence 9999999999876543
No 95
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=2e-15 Score=136.58 Aligned_cols=110 Identities=24% Similarity=0.437 Sum_probs=91.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
.+|.|+|++|+ |...+..+.+||||+++++.. ..+|+++++++||.|||+|.|.+.. ...|.|+|||++.++ ++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCc
Confidence 36999999998 555555788999999999876 8999999999999999999999864 468999999999987 99
Q ss_pred ccEEEEEecccccCCCc-----eeeeeecCCC------CceEEEEEE
Q 008661 144 TLGDCTINISDLRDGQR-----HDMWIPLQNI------KIGRLHLAI 179 (558)
Q Consensus 144 fIGev~IpL~eL~~~~~-----~e~W~~L~~k------~~GeL~LsL 179 (558)
+||++.++|.++..... ...|++|... ..|+|.+.+
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999875432 3458888643 368887765
No 96
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=1.3e-15 Score=172.83 Aligned_cols=121 Identities=23% Similarity=0.392 Sum_probs=106.0
Q ss_pred CceEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEeCCe-EE
Q 008661 64 PVAYARVEVVEASDMKPSDL------------------------------------------NGLADPYVKGQLGPY-RF 100 (558)
Q Consensus 64 ~~G~L~VtVieArdL~~~D~------------------------------------------~G~sDPYVkV~Lgp~-k~ 100 (558)
=.|.|.|+|++|++|+.||. .+++||||+|.|+.. ..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 36899999999999986432 246799999999875 56
Q ss_pred EeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeecCC------CCceE
Q 008661 101 RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGR 174 (558)
Q Consensus 101 KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~------k~~Ge 174 (558)
||+++++++||+|||+|.|.+.. ....|.|+|||+|.+++++||++.|||.+|..++..+.|++|.+ +..|+
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah--~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k 169 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAH--PFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA 169 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecC--CCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence 99999999999999999999986 34689999999999999999999999999999999999999975 24589
Q ss_pred EEEEEEEEeccC
Q 008661 175 LHLAITVLEESA 186 (558)
Q Consensus 175 L~LsL~y~p~~~ 186 (558)
|+|+|.|.|...
T Consensus 170 l~v~lqf~pv~~ 181 (868)
T PLN03008 170 IFIDMKFTPFDQ 181 (868)
T ss_pred EEEEEEEEEccc
Confidence 999999999764
No 97
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.62 E-value=2e-15 Score=134.90 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=85.2
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC----C
Q 008661 72 VVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH----F 140 (558)
Q Consensus 72 VieArdL~~~D~~G~sDPYVkV~Lgp~-------k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~----~ 140 (558)
.++|++|+..+..|.+||||++++.+. .++|+++++++||+|||+|.|.+.. +..+.|.|+|||+|. +
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~-~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF-EEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe-EeeeEEEEEEEEecCCcCCC
Confidence 589999999999999999999999664 4899999999999999999998653 345689999999997 6
Q ss_pred C-CCccEEEEEecccccCCCceeeeeecC
Q 008661 141 V-DDTLGDCTINISDLRDGQRHDMWIPLQ 168 (558)
Q Consensus 141 s-DDfIGev~IpL~eL~~~~~~e~W~~L~ 168 (558)
+ +++||++.+++.+|..+.....|+.|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 5 999999999999999888888899994
No 98
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=6.1e-15 Score=136.53 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=91.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------eEEEeeeecCCCCCcc-ceEEEEeeccCCCCceEEE
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVI 132 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------------~k~KTkVikkTlNPvW-nEtF~F~V~~~e~~~tL~V 132 (558)
.+.|++++|++|+ ++..|.+||||++++.+ ++++|+++++++||+| ||+|.|.+.. .+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEE
Confidence 4689999999998 77789999999999954 3689999999999999 9999999864 468999
Q ss_pred EEeecCCCC----CCccEEEEEecccccCCC---ceeeeeecCCC-----CceEEEEEE
Q 008661 133 EVRDKDHFV----DDTLGDCTINISDLRDGQ---RHDMWIPLQNI-----KIGRLHLAI 179 (558)
Q Consensus 133 ~V~D~D~~s----DDfIGev~IpL~eL~~~~---~~e~W~~L~~k-----~~GeL~LsL 179 (558)
+|||++..+ +++||++.++|.++..+. ....|++|... ..|+|.|.+
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999986532 689999999999996553 36779999853 358887765
No 99
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=7.8e-16 Score=140.95 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=85.1
Q ss_pred eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661 173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS 235 (558)
Q Consensus 173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~ 235 (558)
|+|+|+|+|.+..+. .+.+||||++++.. +.+..+++||.++++|+||+|| |.|.|. +.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-E~F~f~i~~ 76 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH---GLKLIKTKKTSCMRGTIDPFYN-ESFSFKVPQ 76 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc---CCcccceEcCccccCCCCCccc-eeEEEeCCH
Confidence 667777777655432 23489999999833 3455677999999999999999 999999 67
Q ss_pred CCCCCCceEEEEEeccCc--ccc-ceE-Ee--cCCccccccCccccCCCCCcccceeec
Q 008661 236 EKSPKVADNFEPINIEGQ--QET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 236 e~l~~v~leveV~D~dG~--~e~-Gv~-v~--~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
+++....+.|+|||++.. ++. |-. ++ ..|.....||..|+.+|++|+++||.+
T Consensus 77 ~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 77 EELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 778888999999999843 333 533 22 233334589999999999999999964
No 100
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=1.9e-14 Score=134.79 Aligned_cols=112 Identities=17% Similarity=0.276 Sum_probs=95.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC-C---
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F--- 140 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~-~--- 140 (558)
..|.|.|++|++|++++ +|||.|.|+..+ .||+++.++.||.|+|.|.|.... ....|.|.||..+. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~--~~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP--PVSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC--cccEEEEEEEEccCccccc
Confidence 57999999999998865 799999999866 599999999999999999997654 34689999986542 2
Q ss_pred -CCCccEEEEEecccccCCCceeeeeecCCC-------------CceEEEEEEEEEec
Q 008661 141 -VDDTLGDCTINISDLRDGQRHDMWIPLQNI-------------KIGRLHLAITVLEE 184 (558)
Q Consensus 141 -sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-------------~~GeL~LsL~y~p~ 184 (558)
++++||.+.||+..+..+...+.||+|.+. ..+.|+++++|.+.
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 378999999999999998889999999752 23689999999875
No 101
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.58 E-value=2.6e-15 Score=136.87 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=85.9
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
.|+|+++|.|.+..+. .+.+||||++++.. ++++..++||.++++++||+|| |.|.|. +
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~i~ 76 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ---NGKRLKKKKTTIKKRTLNPYYN-ESFSFEVP 76 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE---CCcccceeeccceeCCCCCccc-ceEEEECC
Confidence 3677777777665543 23489999999943 3456677899999999999999 999999 6
Q ss_pred CCCCCCCceEEEEEeccC--cccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661 235 SEKSPKVADNFEPINIEG--QQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 235 ~e~l~~v~leveV~D~dG--~~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
..++....+.++|||++. .++. |-. +...|.+ ..||.+|+..|+.|++|||..
T Consensus 77 ~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~-~~~W~~~~~~~~~~~~~wh~~ 135 (136)
T cd08402 77 FEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAE-LRHWSDMLASPRRPIAQWHTL 135 (136)
T ss_pred HHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChH-HHHHHHHHhCCCCeeeEEEEc
Confidence 667777889999999984 3443 533 3344443 489999999999999999964
No 102
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=3.4e-14 Score=126.82 Aligned_cols=111 Identities=23% Similarity=0.475 Sum_probs=92.3
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEeC------CeEEEeeeecCCC-CCccceEEEEeeccCCCCceEEEEEeec
Q 008661 67 YARVEVVEASDMKPSD--LNGLADPYVKGQLG------PYRFRTKTQRKTL-SPKWHEEFNIPISTWDSPNVLVIEVRDK 137 (558)
Q Consensus 67 ~L~VtVieArdL~~~D--~~G~sDPYVkV~Lg------p~k~KTkVikkTl-NPvWnEtF~F~V~~~e~~~tL~V~V~D~ 137 (558)
.|+|+|++|++|+.++ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+... ....|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 6999999999999888 57889999999993 4568999988765 999999999998842 345799999999
Q ss_pred CCCCCCccEEEEEecccccCCCceeeeeecCC-----CCceEEEEEEEE
Q 008661 138 DHFVDDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITV 181 (558)
Q Consensus 138 D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~-----k~~GeL~LsL~y 181 (558)
+..++++||.+.++|.++..+ ..|++|.. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 988889999999999998654 35788864 235788888765
No 103
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.57 E-value=3.1e-15 Score=136.10 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=75.3
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEecc--Ccccc-ceE-E--e
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE--GQQET-GIW-V--H 261 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d--G~~e~-Gv~-v--~ 261 (558)
+.+||||++++.. .+++.+++||.++++++||+|| |.|.|. +.+.+....+.|+|||++ |.++. |.+ + .
T Consensus 33 g~~dpyvkv~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 33 GFSDPYVKVSLMC---EGRRLKKKKTSVKKNTLNPTYN-EALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCceEEEEEEe---CCcccceecCCcccCCCCCccc-ceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 4489999999943 3556778899999999999999 999998 666677778999999998 44444 644 2 2
Q ss_pred cCCccccccCccccCCCCCcccceeec
Q 008661 262 QPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 262 ~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
.++.+ ..||.+|+.+|++|++|||.+
T Consensus 109 ~~~~~-~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 109 ADGQG-REHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCCch-HHHHHHHHHCCCCeeeEeecC
Confidence 33333 479999999999999999964
No 104
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.55 E-value=4.5e-14 Score=127.84 Aligned_cols=93 Identities=26% Similarity=0.381 Sum_probs=75.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeec-----
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK----- 137 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~----- 137 (558)
|.|+|++|+||+ +.+||||++++.+ .+++|+++++|+||+|||+|.|.+.. .++|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccc
Confidence 689999999995 5699999999965 35899999999999999999999863 67999999998
Q ss_pred --CCCC-CCccEEEEEeccc--ccCCCceeeeeecC
Q 008661 138 --DHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 168 (558)
Q Consensus 138 --D~~s-DDfIGev~IpL~e--L~~~~~~e~W~~L~ 168 (558)
|..+ |++||.+.+.|+. +.....+...+.|.
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred cccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 4555 9999888887764 33334455556554
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=177.05 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661 63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 141 (558)
Q Consensus 63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s 141 (558)
.-.|.|+|+|++|.||. +..|.+||||++.++++ +.||++++++.||+|||+|.|.+...+..+.|+|+|||+|.|+
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 34699999999999998 44789999999999975 7899999999999999999988886555678999999999999
Q ss_pred CCccEEEEEecccccCCCceeeeeecCC--CCceE---EEEEEEEEe
Q 008661 142 DDTLGDCTINISDLRDGQRHDMWIPLQN--IKIGR---LHLAITVLE 183 (558)
Q Consensus 142 DDfIGev~IpL~eL~~~~~~e~W~~L~~--k~~Ge---L~LsL~y~p 183 (558)
++.||.+.|+|.++..++....||+|.+ .+.|+ |++.+.|.+
T Consensus 2055 kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 8899999999999999999999999987 56788 999998864
No 106
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.54 E-value=9.3e-15 Score=133.41 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=85.9
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
+|+|.|+++|.+.... .+.+||||++++.. ++++..++||.++++++||+|| |.|.|. +
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~---~~~~~~~~kT~v~k~t~nP~w~-e~F~f~v~ 76 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYY---GKKRISKKKTHVKKCTLNPVFN-ESFVFDIP 76 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEc---CCceeeeEcCccccCCCCCccC-ceEEEECC
Confidence 4677777777654332 23479999999943 3556678899999999999999 999999 7
Q ss_pred CCCCCCCceEEEEEeccCc--ccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661 235 SEKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 235 ~e~l~~v~leveV~D~dG~--~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
..++....++|+|||++.. .+. |-. +...+. ...||.++...|++|+++||.+
T Consensus 77 ~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~-~~~~w~~l~~~~~~~i~~Wh~l 135 (136)
T cd08404 77 SEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGS-GGHHWKEVCNPPRRQIAEWHML 135 (136)
T ss_pred HHHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCc-hHHHHHHHHhCCCCeeeEEEec
Confidence 7777888999999999843 333 533 333333 3589999999999999999975
No 107
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.52 E-value=5.8e-14 Score=123.07 Aligned_cols=90 Identities=24% Similarity=0.422 Sum_probs=76.3
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEeCCe------EEEeeeecCCCCCccceEEEEeeccC---CCCceEEEEEeecCC
Q 008661 69 RVEVVEASDMKPSDLNGLADPYVKGQLGPY------RFRTKTQRKTLSPKWHEEFNIPISTW---DSPNVLVIEVRDKDH 139 (558)
Q Consensus 69 ~VtVieArdL~~~D~~G~sDPYVkV~Lgp~------k~KTkVikkTlNPvWnEtF~F~V~~~---e~~~tL~V~V~D~D~ 139 (558)
.+-.++|++|+.++..+.+||||+|++.+. .++|+++++++||+|| +|.|.+... +....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 344679999999999999999999998542 5899999999999999 788876532 225799999999999
Q ss_pred CC-CCccEEEEEecccccCCC
Q 008661 140 FV-DDTLGDCTINISDLRDGQ 159 (558)
Q Consensus 140 ~s-DDfIGev~IpL~eL~~~~ 159 (558)
++ |++||++.++|.+|...+
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcCC
Confidence 97 999999999999998543
No 108
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=9e-15 Score=133.37 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=84.9
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
+|+|+|+|+|.+.... .+.+||||++++.. ++.+..++||.++++++||+|| |.|.|. +
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~---~~~~~~~~kT~v~~~t~~P~wn-e~F~f~i~ 76 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMY---KDKRVEKKKTVIKKRTLNPVFN-ESFIFNIP 76 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEe---CCCccccccCcceeCCCCCccc-ceEEEeCC
Confidence 3677777777665433 23489999999943 3445567899999999999999 999999 6
Q ss_pred CCCCCCCceEEEEEeccC--cccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661 235 SEKSPKVADNFEPINIEG--QQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 235 ~e~l~~v~leveV~D~dG--~~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
.+.+....+.|+|||++. .++. |-. +...|. ..+||.+|+..|.+|+++||..
T Consensus 77 ~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-~~~~w~~~~~~~~~~~~~wh~l 135 (136)
T cd08405 77 LERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-ELKHWKDMLSKPRQPVAQWHRL 135 (136)
T ss_pred HHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-hHHHHHHHHhCCCCchhEEEec
Confidence 667777889999999984 3443 543 233333 3589999999999999999974
No 109
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.49 E-value=3.5e-14 Score=128.67 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=74.1
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC--cccc-ceE-EecC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW-VHQP 263 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG--~~e~-Gv~-v~~p 263 (558)
+.+||||++++... +.+..++||.++++++||+|| |.|.|. +..++....+.|+|||++. .++. |.. +...
T Consensus 32 ~~~DpyV~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~ 107 (133)
T cd08384 32 GYSDPFVKLYLKPD---AGKKSKHKTQVKKKTLNPEFN-EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107 (133)
T ss_pred CCCCcEEEEEEEcC---CCccCCceeeeEeccCCCCcc-cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecC
Confidence 45899999999543 344567899999999999999 999999 6566777899999999883 3333 544 3222
Q ss_pred Cc-cccccCccccCCCCCcccceeec
Q 008661 264 GS-EVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 264 gt-~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
.. +...||-+|+.+|++|+++||.+
T Consensus 108 ~~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 108 AKGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CCCchHHHHHHHHhCCCCChheeecC
Confidence 22 23489999999999999999963
No 110
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.47 E-value=7.2e-14 Score=126.58 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=71.1
Q ss_pred eEEEEEEEEEeccCC-------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCC
Q 008661 173 GRLHLAITVLEESAK-------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKS 238 (558)
Q Consensus 173 GeL~LsL~y~p~~~~-------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l 238 (558)
|+|+++|+|.+..++ .+.+|||||++|.+ ..+ .+|+||.|+++|+||+|| |.|.|. +.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~---~~k-~~k~kT~v~rktlnPvfn-E~f~F~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVSV---SEG-QKEAQTALKKLALHTQWE-EELVFPLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcC---CcC-ccEEEcceecCCCCCccc-cEEEEeCCHHHh
Confidence 456777777666543 23389999999943 233 457799999999999999 999999 99999
Q ss_pred CCCceEEEEEecc--Ccccc-ceE-EecC---CccccccCcc
Q 008661 239 PKVADNFEPINIE--GQQET-GIW-VHQP---GSEVAQTWEP 273 (558)
Q Consensus 239 ~~v~leveV~D~d--G~~e~-Gv~-v~~p---gt~~~~hW~~ 273 (558)
+..++.++|||+| +.++. |-. +... .+...+||.+
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 9999999999999 44554 543 2211 1223479976
No 111
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.4e-13 Score=148.59 Aligned_cols=113 Identities=27% Similarity=0.426 Sum_probs=97.4
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 126 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~- 126 (558)
|++.|+|.|.+..|.|+|.|++|++|+.++..+.+||||++++.. .+.+|.++++++||+|||+|.|.|+....
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 689999999999999999999999999999999999999999954 46799999999999999999999985433
Q ss_pred CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeec
Q 008661 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 167 (558)
Q Consensus 127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L 167 (558)
...|.|+|||+|.++ +++||.|.+.... .+....+|..+
T Consensus 365 ~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m 404 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEM 404 (421)
T ss_pred eeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHH
Confidence 348999999999998 8899999998876 22234455544
No 112
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.42 E-value=4.8e-13 Score=109.23 Aligned_cols=81 Identities=35% Similarity=0.644 Sum_probs=72.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
|+|+|++|++|+..+..+.++|||++++.. ..++|++++++.+|.|+|+|.|.+...+ ...|.|+|||++.++ ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 789999999999988888999999999977 6799999999999999999999977533 345999999999998 99
Q ss_pred ccEEEE
Q 008661 144 TLGDCT 149 (558)
Q Consensus 144 fIGev~ 149 (558)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 113
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.38 E-value=4.3e-13 Score=120.62 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC--cccc-ceE---Eec
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW---VHQ 262 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG--~~e~-Gv~---v~~ 262 (558)
..||||++++... +....++||.+++++.||+|| |.|.|. +...+....+.|+|||++. .++. |.+ +..
T Consensus 34 ~~dpyv~v~l~~~---~~~~~~~~T~~~~~~~~P~wn-e~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 34 LSDPYVKVSLLQG---GKKLKKKKTSVKKGTLNPVFN-EAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCcEEEEEEEcC---CeEeeeecCcceecCCCCeee-eeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 4799999999443 455677899999999999999 999999 5556667889999999885 3333 544 333
Q ss_pred CCccccccCccccCCCCCcccceeec
Q 008661 263 PGSEVAQTWEPRKGKNRRLDTLVRRV 288 (558)
Q Consensus 263 pgt~~~~hW~~~l~~~r~~~~q~~~~ 288 (558)
.+. ...||.+++.+|+.++++||++
T Consensus 110 ~~~-~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 110 GGE-ELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CCc-HHHHHHHHHhCCCCceEEeeeC
Confidence 222 3489999999999999999984
No 114
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.2e-13 Score=146.46 Aligned_cols=189 Identities=23% Similarity=0.375 Sum_probs=145.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC-----
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----- 140 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~----- 140 (558)
..++++|+.|++|.++|..|.+||||.+.++..+.+|+++...+||+|||.|.|...+ ....+.+.|||.|.-
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCceeEEEEecCcccHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999987 567899999998742
Q ss_pred -------CCCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEeccCCCCCCCCcceEEecccCCCCce
Q 008661 141 -------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKE 208 (558)
Q Consensus 141 -------sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~kr 208 (558)
+|||||+..|.+..|.. ..+.||.|+.+ ..|.|+|.|...-..+.. .-||...|-
T Consensus 373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeek--vapyhvqyt--------- 439 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEK--VAPYHVQYT--------- 439 (1283)
T ss_pred HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCccc--cccceeeeh---------
Confidence 38999999999998764 47899999863 468888888776543321 126665322
Q ss_pred eeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccccceEEecCCccccccCccccC---------CCC
Q 008661 209 DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKG---------KNR 279 (558)
Q Consensus 209 lkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~Gv~v~~pgt~~~~hW~~~l~---------~~r 279 (558)
.... .-|.|. .+. -++.+-+..|...+.+|....++++...+..|.| +--
T Consensus 440 ------clhe---------nlfh~~-~~~-----~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthfa 498 (1283)
T KOG1011|consen 440 ------CLHE---------NLFHAH-TDD-----GEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFA 498 (1283)
T ss_pred ------hHhh---------hhHHhh-hcc-----cceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111 223333 111 2344456667777789988999998888888887 457
Q ss_pred CcccceeecCC
Q 008661 280 RLDTLVRRVPN 290 (558)
Q Consensus 280 ~~~~q~~~~~~ 290 (558)
|+.+++.|+|-
T Consensus 499 cl~skymcpgv 509 (1283)
T KOG1011|consen 499 CLSSKYMCPGV 509 (1283)
T ss_pred HHhhcccCCCc
Confidence 88899999883
No 115
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.34 E-value=9e-12 Score=102.12 Aligned_cols=99 Identities=44% Similarity=0.831 Sum_probs=87.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 145 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI 145 (558)
|.|.|++|++|........++|||.+.+.. ..++|.++.++.||.|++.|.|.+... ....|.|+||+.+... +.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 578999999998876678899999999988 889999999999999999999998852 3568999999999887 8899
Q ss_pred EEEEEeccccc-CCCceeeeeec
Q 008661 146 GDCTINISDLR-DGQRHDMWIPL 167 (558)
Q Consensus 146 Gev~IpL~eL~-~~~~~e~W~~L 167 (558)
|.+.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 66667888875
No 116
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.32 E-value=1.3e-11 Score=102.37 Aligned_cols=94 Identities=39% Similarity=0.614 Sum_probs=82.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 143 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~---k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD 143 (558)
|.|.|++|++|......+..+|||++++... ..+|+++.++.||.|||+|.|.+.... ...|.|+|||.+..+ +.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 7899999999988776678999999999875 799999999999999999999998632 679999999999887 88
Q ss_pred ccEEEEEecccccCCCcee
Q 008661 144 TLGDCTINISDLRDGQRHD 162 (558)
Q Consensus 144 fIGev~IpL~eL~~~~~~e 162 (558)
+||.+.++|.++..+....
T Consensus 81 ~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eeEEEEEEHHHcccCcccc
Confidence 9999999999987765443
No 117
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=1.5e-11 Score=113.78 Aligned_cols=93 Identities=30% Similarity=0.471 Sum_probs=78.8
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEeCC---eEEEeeeecCCCC--CccceEEEEeeccCC-------------
Q 008661 68 ARVEVVEASDMKPSD--LNG--LADPYVKGQLGP---YRFRTKTQRKTLS--PKWHEEFNIPISTWD------------- 125 (558)
Q Consensus 68 L~VtVieArdL~~~D--~~G--~sDPYVkV~Lgp---~k~KTkVikkTlN--PvWnEtF~F~V~~~e------------- 125 (558)
|+|.|.+|++++..+ ..| .+||||++.|.+ .+++|.|+++++| |.||+.|.|.+....
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976544 356 499999999965 5789999999999 999999999876411
Q ss_pred ---------CCceEEEEEeecCCCC-CCccEEEEEecccccCCCc
Q 008661 126 ---------SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR 160 (558)
Q Consensus 126 ---------~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~ 160 (558)
....|.|+|||.|.++ |++||+++++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 2458999999999998 9999999999999876644
No 118
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.21 E-value=1.4e-11 Score=116.83 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=67.7
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc--ccc-ceE-Eec
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ--QET-GIW-VHQ 262 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~ 262 (558)
+.+||||++++.. .+....++||.++++++||+|| |.|.|. +.+++....+.|+|||++.. ++. |-. +..
T Consensus 46 g~~DPYVkv~l~~---~~~~~~~~kT~vi~~t~nP~Wn-E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l 121 (162)
T cd04020 46 GTSDSFVKCYLLP---DKSKKSKQKTPVVKKSVNPVWN-HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGL 121 (162)
T ss_pred CCCCCEEEEEEEc---CCCCCcceeCCccCCCCCCCCC-CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeC
Confidence 4589999999943 3445567899999999999999 999997 45567778899999998843 332 533 221
Q ss_pred C--------------CccccccCccccCCCCCccc
Q 008661 263 P--------------GSEVAQTWEPRKGKNRRLDT 283 (558)
Q Consensus 263 p--------------gt~~~~hW~~~l~~~r~~~~ 283 (558)
. .++...||..|+.+|++++.
T Consensus 122 ~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~ 156 (162)
T cd04020 122 GTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVE 156 (162)
T ss_pred CccccCCCccccccCChHHHHHHHHHHhCCCCeEE
Confidence 1 12335899999999998875
No 119
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.15 E-value=9.6e-11 Score=135.74 Aligned_cols=108 Identities=35% Similarity=0.550 Sum_probs=96.9
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661 63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 141 (558)
Q Consensus 63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s 141 (558)
.+.|.|.|.+..|.||+..|.+|.+||||++.+... .++|+++++|+||+|||+|.++|.. .....|.|.|+|||...
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~-r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN-RVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeec-cccceEEEEEeecccCC
Confidence 467999999999999999999999999999999774 8999999999999999999999985 24568999999999987
Q ss_pred -CCccEEEEEecccccCCCceeeeeecCCCC
Q 008661 142 -DDTLGDCTINISDLRDGQRHDMWIPLQNIK 171 (558)
Q Consensus 142 -DDfIGev~IpL~eL~~~~~~e~W~~L~~k~ 171 (558)
++.||.+.++|..|..+.....-++|.++.
T Consensus 1116 knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038 1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred CccccccccccHhhcCcCCccceeeeccCcc
Confidence 999999999999999888777777777643
No 120
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.14 E-value=3.2e-11 Score=133.61 Aligned_cols=105 Identities=29% Similarity=0.370 Sum_probs=93.9
Q ss_pred CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661 53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD 125 (558)
Q Consensus 53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------~k~KTkVikkTlNPvWnEtF~F~V~~~e 125 (558)
|.+.....|......|.|.|+.|+++.+.|.+|.+||||.|.++| ...+|+|+.+|+||+|+|+|.|.|+..+
T Consensus 934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~ 1013 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEP 1013 (1103)
T ss_pred CceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccc
Confidence 445667789999999999999999999999999999999999998 3469999999999999999999999643
Q ss_pred -C--CceEEEEEeecCCCC-CCccEEEEEecccccC
Q 008661 126 -S--PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 157 (558)
Q Consensus 126 -~--~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~ 157 (558)
. ...|.|+|+|+|-++ +||-|++.+.|.++..
T Consensus 1014 c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1014 CSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2 347999999999998 9999999999998864
No 121
>PLN02270 phospholipase D alpha
Probab=99.09 E-value=8.1e-10 Score=126.04 Aligned_cols=120 Identities=18% Similarity=0.346 Sum_probs=103.0
Q ss_pred ceEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEeCC-eEEEeeeecCC-CCCccceEEEEeeccC
Q 008661 65 VAYARVEVVEASDMKPSD------------------LNGLADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTW 124 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D------------------~~G~sDPYVkV~Lgp-~k~KTkVikkT-lNPvWnEtF~F~V~~~ 124 (558)
.|.|.|+|++|++|+.++ ..+++||||.|.++. ...+|+++.+. .||+|+|.|.+.+..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah- 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH- 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence 589999999999998642 125789999999987 56799999884 699999999999986
Q ss_pred CCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEeccC
Q 008661 125 DSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESA 186 (558)
Q Consensus 125 e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~~ 186 (558)
....+.|.|.|.|.++..+||.+.||+.+|..+...+.||++.+. ....|+|++.|.+...
T Consensus 86 -~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 86 -MASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred -CcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 357899999999999988999999999999999999999999652 2348999999998653
No 122
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.07 E-value=2.2e-10 Score=103.92 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=61.1
Q ss_pred ceEEEEEEEEEeccCC-----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661 172 IGRLHLAITVLEESAK-----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV- 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~-----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe- 233 (558)
.|+|+|+|.|.+..+. .+.+||||++++.+. +.+..++||.++++++||+|| |.|.|.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~---~~~~~~~kT~v~~~t~nP~wn-E~f~f~i 76 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD---KSRQSKRKTSIKRNTTNPVYN-ETLKYSI 76 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC---CccccceEeeeeeCCCCCccc-ceEEEEC
Confidence 3777777777655433 134899999999543 445677899999999999999 999999
Q ss_pred CCCCCCCCceEEEEEeccC
Q 008661 234 SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 234 p~e~l~~v~leveV~D~dG 252 (558)
+.+++....+.|+|||++.
T Consensus 77 ~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 77 SHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred CHHHhCCCEEEEEEEECCC
Confidence 6667888899999999984
No 123
>PLN02223 phosphoinositide phospholipase C
Probab=99.07 E-value=1e-09 Score=120.80 Aligned_cols=113 Identities=22% Similarity=0.309 Sum_probs=87.7
Q ss_pred ceEEEEEEEEecCCCCC-----CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEE
Q 008661 65 VAYARVEVVEASDMKPS-----DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEV 134 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~-----D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V 134 (558)
...|.|+|+.|++|+.. +.....||||+|.+.. ..++|.+..++.||+|||+|.|.+...+ -..|+|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEEE
Confidence 46799999999998521 2235689999999943 4568888889999999999999998533 44799999
Q ss_pred eecCCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661 135 RDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 181 (558)
Q Consensus 135 ~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y 181 (558)
||+|... ++|||++.+|+..|..|.+ +++|.+. ..-.|.+++.|
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEe
Confidence 9999877 8999999999999998864 4566542 22356666554
No 124
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.04 E-value=3.5e-10 Score=102.33 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=61.3
Q ss_pred ceEEEEEEEEEeccCC----------------C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661 172 IGRLHLAITVLEESAK----------------Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV- 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe- 233 (558)
+|+|+|+|.|.+...+ . +.+||||++++.+. ..+..++||.++++++||+|| |.|.|.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~---~~~~~~~kT~v~~~t~nP~~n-E~f~f~v 76 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD---KSNRGKRKTSVKKKTLNPVFN-ETLRYKV 76 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC---CCccccccCccCcCCCCCccC-ceEEEEC
Confidence 4777777777766422 2 45899999999543 344567899999999999999 999999
Q ss_pred CCCCCCCCceEEEEEeccC
Q 008661 234 SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 234 p~e~l~~v~leveV~D~dG 252 (558)
+.+++....+.++|||++.
T Consensus 77 ~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 77 EREELPTRVLNLSVWHRDS 95 (125)
T ss_pred CHHHhCCCEEEEEEEeCCC
Confidence 6667888899999999984
No 125
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.02 E-value=4.9e-10 Score=102.37 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=62.3
Q ss_pred ceEEEEEEEEEeccCC-----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661 172 IGRLHLAITVLEESAK-----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV- 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~-----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe- 233 (558)
+|+|+|+|+|.+.... .+..|||||+++.+. .....++||.++++++||+|| |.|.|.
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~---~~~~~k~kT~v~~~t~nPvfN-E~F~f~v 76 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD---KSHNSKRKTAVKKGTVNPVFN-ETLKYVV 76 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC---CcccceeecccccCCCCCccc-eEEEEEc
Confidence 3777777777665433 144799999999544 344567899999999999999 999999
Q ss_pred CCCCCCCCceEEEEEeccCc
Q 008661 234 SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 234 p~e~l~~v~leveV~D~dG~ 253 (558)
+.+++....+.++|||++..
T Consensus 77 ~~~~l~~~~L~v~V~~~~~~ 96 (128)
T cd08392 77 EADLLSSRQLQVSVWHSRTL 96 (128)
T ss_pred CHHHhCCcEEEEEEEeCCCC
Confidence 77788889999999999843
No 126
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.99 E-value=7.5e-10 Score=100.93 Aligned_cols=61 Identities=10% Similarity=-0.075 Sum_probs=52.4
Q ss_pred CCCCCcceEEecccCCCCce-eeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~kr-lkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~ 253 (558)
+.+|||||++|.+. .++ ..++||.++++++||+|| |.|.|. +.+++...++.++||++++.
T Consensus 33 ~~~dpyVKv~Llp~---~~~~~~~~kT~v~~~t~nPvfn-E~F~f~v~~~~L~~~~L~~~V~~~~~~ 95 (124)
T cd08680 33 ENSKVYVRVALLPC---SSSTSCLFRTKALEDQDKPVFN-EVFRVPISSTKLYQKTLQVDVCSVGPD 95 (124)
T ss_pred CCCCeEEEEEEccC---CCCCCceEEcCccCCCCCCccc-cEEEEECCHHHhhcCEEEEEEEeCCCC
Confidence 34899999999544 433 357899999999999999 999999 89999999999999999843
No 127
>PLN02952 phosphoinositide phospholipase C
Probab=98.99 E-value=3.6e-09 Score=118.44 Aligned_cols=101 Identities=30% Similarity=0.412 Sum_probs=83.2
Q ss_pred ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661 65 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 133 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~------D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~ 133 (558)
...|.|+|+.|.+|+.. +.....||||+|.+.. .+.+|+++.++.||+|||+|.|.+...+ -..|+|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence 46799999999988531 1123469999999843 5679999999999999999999988533 3479999
Q ss_pred EeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
|||+|..+ ++|+|++.+||..|..|.+ |++|.+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~ 581 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHD 581 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCce---eEeCcC
Confidence 99999987 9999999999999998864 888874
No 128
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.98 E-value=1.2e-10 Score=129.19 Aligned_cols=123 Identities=26% Similarity=0.477 Sum_probs=102.2
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------------------------------EEEeeeecCCCCC
Q 008661 63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------------------------------RFRTKTQRKTLSP 111 (558)
Q Consensus 63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-------------------------------k~KTkVikkTlNP 111 (558)
+|..-|.|.+.+|++|.++|.+|.+|||+++.+.+. ..-|.|+++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 355567889999999999999999999999988540 1247899999999
Q ss_pred ccceEEEEeeccCCCCceEEEEEeecCC---------------------------------CC----CCccEEEEEeccc
Q 008661 112 KWHEEFNIPISTWDSPNVLVIEVRDKDH---------------------------------FV----DDTLGDCTINISD 154 (558)
Q Consensus 112 vWnEtF~F~V~~~e~~~tL~V~V~D~D~---------------------------------~s----DDfIGev~IpL~e 154 (558)
+|+|.|.|.|.+. ...++++-+||+|- .+ |||||++.|||.+
T Consensus 191 kW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred chhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999863 46689999999871 11 7899999999999
Q ss_pred ccCCCceeeeeecCCC-----CceEEEEEEEEEeccCC
Q 008661 155 LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAK 187 (558)
Q Consensus 155 L~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~~~ 187 (558)
+... ..++||.|+++ ..|.++|.|++......
T Consensus 270 iP~~-Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 270 IPPD-GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred CCcc-hHHHHhccCcccccccccceEEEEEEEeeeccc
Confidence 9865 58999999874 46999999999876543
No 129
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.96 E-value=9.6e-10 Score=99.29 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=51.5
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~ 253 (558)
+.+|||||+++.+. ..+..++||.++++++||+|| |.|.|. +.+.+....+.++|||++..
T Consensus 31 ~~~DpyVkv~l~~~---~~~~~~~kT~v~~~~~nP~wn-E~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 31 SDPDPYVKTYLLPD---PQKTTKRKTKVVRKTRNPTFN-EMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred CCCCCEEEEEEeeC---CccCCceeCCccCCCCCCCcc-cEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 45899999999543 345578899999999999999 999998 56778889999999999854
No 130
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.94 E-value=5.7e-09 Score=97.95 Aligned_cols=59 Identities=12% Similarity=-0.053 Sum_probs=48.8
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE-eccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~-D~dG~ 253 (558)
+.+|||||++|.+ .+++..|+||.++++|+||+|| |.|.|... +....+.++|| |++..
T Consensus 49 g~sDPYVKv~Llp---~~~~~~k~KT~v~kktlnPvfN-E~F~f~v~--l~~~~L~v~V~~d~~~~ 108 (146)
T cd04028 49 VLPAPYVKVYLLE---GKKCIAKKKTKIARKTLDPLYQ-QQLVFDVS--PTGKTLQVIVWGDYGRM 108 (146)
T ss_pred CCcCCeEEEEEEC---CCccccceeceecCCCCCCccC-CeEEEEEc--CCCCEEEEEEEeCCCCC
Confidence 3589999999944 3555678999999999999999 99999933 67889999999 56643
No 131
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.92 E-value=6.9e-09 Score=116.10 Aligned_cols=113 Identities=26% Similarity=0.362 Sum_probs=87.6
Q ss_pred ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661 65 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 133 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~------D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~ 133 (558)
..+|.|+|+.|.+++.. +.....||||+|.+-. .+.+|++..++.||+|||+|.|.+...+ -..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEEE
Confidence 46899999999987521 2234579999999932 4578999999999999999999988533 4589999
Q ss_pred EeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCC-----ceEEEEEEEE
Q 008661 134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 181 (558)
Q Consensus 134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~-----~GeL~LsL~y 181 (558)
|||+|... ++|||+..+|+..|..|.++ ++|.+.. .-.|.+++.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~---V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIHA---VPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccce---EeccCCCcCCCCCCeeEEEEEe
Confidence 99999876 99999999999999988663 5665421 2356666554
No 132
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.89 E-value=3.5e-09 Score=96.40 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=57.9
Q ss_pred ceEEEEEEEEEeccCC----------------C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661 172 IGRLHLAITVLEESAK----------------Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV- 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe- 233 (558)
+|+|.|+|.|.+.... . +.+||||++++.+. +.+++||.++++++||+|| |.|.|.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~-----~~~~~kT~v~~~t~nP~wn-E~F~f~~ 75 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-----KEHKVKTRVLRKTRNPVYD-ETFTFYG 75 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC-----cCceeeccEEcCCCCCcee-eEEEEcc
Confidence 5777777777665432 2 44799999999432 2345789999999999999 999994
Q ss_pred -CCCCCCCCceEEEEEeccCc
Q 008661 234 -SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 234 -p~e~l~~v~leveV~D~dG~ 253 (558)
+.+++....+.++|||++..
T Consensus 76 ~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 76 IPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred cCHHHhCCCEEEEEEEEcCCC
Confidence 55677778899999998843
No 133
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.87 E-value=2e-09 Score=124.39 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=99.4
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
+|...+++.|. .++|.|-|..|++|+-..-+..+||||+.||.| .+.||+++++|.||.|||.+.+.-.+-+
T Consensus 1512 ggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~ 1589 (1639)
T KOG0905|consen 1512 GGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEI 1589 (1639)
T ss_pred CceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhh
Confidence 45677888887 899999999999997666677899999999987 4679999999999999999988733222
Q ss_pred -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
.++.|.++||..+.+. +.|+|.+.|+|.++...+....||.|..
T Consensus 1590 l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1590 LQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 3578999999999888 8999999999999988877779999974
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.87 E-value=1.7e-08 Score=112.87 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=86.9
Q ss_pred ceEEEEEEEEecCCC----C--CCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661 65 VAYARVEVVEASDMK----P--SDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 133 (558)
Q Consensus 65 ~G~L~VtVieArdL~----~--~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~ 133 (558)
...|.|+|+.|.+++ . .+.....||||+|.+.. .+.+|+++.++.||+|||+|.|.+...+ -..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence 357999999998853 1 11234579999999942 5679999999999999999999987533 4589999
Q ss_pred EeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661 134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 181 (558)
Q Consensus 134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y 181 (558)
|||+|... ++|||++.+|+..|..|.++ ++|.+. ..-.|.+++.+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR~---V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIRA---FPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccce---EEccCCCcCCCCCeeEEEEEEe
Confidence 99999876 99999999999999988663 556442 12356666554
No 135
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.87 E-value=8.8e-09 Score=115.93 Aligned_cols=115 Identities=24% Similarity=0.432 Sum_probs=88.7
Q ss_pred EEEEEEEEecCCCCCC----CCCCCCcEEEEEeCC-----eEEEee-eecCCCCCccceEEEEeeccCCCCceEEEEEee
Q 008661 67 YARVEVVEASDMKPSD----LNGLADPYVKGQLGP-----YRFRTK-TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 136 (558)
Q Consensus 67 ~L~VtVieArdL~~~D----~~G~sDPYVkV~Lgp-----~k~KTk-VikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D 136 (558)
+|.|.|+.|.++++.- .+..+||||.|.+.. ...+|+ |..++.||.|+|+|.|.+...+ -..|+|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE-LAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE-LALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc-eeEEEEEEEe
Confidence 7999999999776533 235689999999844 467899 5669999999999999998644 3489999999
Q ss_pred cCCCC-CCccEEEEEecccccCCCceeeeeecCCC--CceEEEEEEEEE
Q 008661 137 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITVL 182 (558)
Q Consensus 137 ~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k--~~GeL~LsL~y~ 182 (558)
+|..+ |||+|+..+|+..|..|.++-.-+..++. ..-+|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCceeeeeecCCCCccccceeEEEEEEEe
Confidence 99998 99999999999999988776333332221 234566666654
No 136
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.86 E-value=3.2e-09 Score=95.02 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=57.4
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
.|+|.|+|.|.+..+. .+.+||||++++.+. ..+++||.++++++||+|| |.|.|. +
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-----~~~~~kT~v~~~t~nP~wn-e~f~f~i~ 75 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-----KKKKFETKVHRKTLNPVFN-ETFTFKVP 75 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-----CCCceecccCcCCCCCcee-eeEEEeCC
Confidence 4667777766554332 234799999999433 1246799999999999999 999999 5
Q ss_pred CCCCCCCceEEEEEeccCc
Q 008661 235 SEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 235 ~e~l~~v~leveV~D~dG~ 253 (558)
..++....+.|+|||++..
T Consensus 76 ~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 76 YSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred HHHhCCCEEEEEEEeCCCC
Confidence 5566678899999999843
No 137
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.85 E-value=5.4e-09 Score=93.22 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=48.9
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~ 253 (558)
+.+||||++++... +....++||.++++++||+|| |.|.|. +.+++....+.++|||++..
T Consensus 35 ~~~dpyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~~~~~~~l~~~~l~~~V~d~~~~ 97 (125)
T cd04031 35 SLRNPYVKVYLLPD---RSEKSKRRTKTVKKTLNPEWN-QTFEYSNVRRETLKERTLEVTVWDYDRD 97 (125)
T ss_pred CCCCCEEEEEEccC---CCccccccccccCCCCCCccc-cEEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 34899999999432 334567899999999999999 999997 33566778999999999853
No 138
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.84 E-value=7.8e-09 Score=112.68 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=98.0
Q ss_pred eEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCccc-eEEEEeeccCC-CCceEEEEEeecCCCC-
Q 008661 66 AYARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKWH-EEFNIPISTWD-SPNVLVIEVRDKDHFV- 141 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWn-EtF~F~V~~~e-~~~tL~V~V~D~D~~s- 141 (558)
|.|-|.|..|++||.||. ....|.||.+.+++..++|.|..+++||.|| +.|.|.|.+.+ ....|+|.++|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999996 4678999999999999999999999999999 56999998655 3458999999999999
Q ss_pred CCccEEEEEecccccCC----------CceeeeeecCCC---CceEEEEEEE
Q 008661 142 DDTLGDCTINISDLRDG----------QRHDMWIPLQNI---KIGRLHLAIT 180 (558)
Q Consensus 142 DDfIGev~IpL~eL~~~----------~~~e~W~~L~~k---~~GeL~LsL~ 180 (558)
+|-||.+.|+++.|... .....||++.+. -+|+|.+-+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 99999999999988543 235689999763 4688776555
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=98.83 E-value=2.1e-08 Score=111.77 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=89.4
Q ss_pred eEEEEEEEEecCCCC---CC---CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcc-ceEEEEeeccCCCCceEEEE
Q 008661 66 AYARVEVVEASDMKP---SD---LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVIE 133 (558)
Q Consensus 66 G~L~VtVieArdL~~---~D---~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvW-nEtF~F~V~~~e~~~tL~V~ 133 (558)
..|+|+|+.|++|+. .+ .....||||+|.+.. .+++|+++.++.||+| ||+|.|.+...+ -..|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEEE
Confidence 479999999998731 11 223489999999833 4679999999999999 999999988533 4489999
Q ss_pred EeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEec
Q 008661 134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE 184 (558)
Q Consensus 134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~ 184 (558)
|+|+|..+ ++|||++.|||..|..|.++ ++|.+. ...+|.+++.+.+.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99999876 99999999999999887664 455442 23567777777553
No 140
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.82 E-value=6.5e-09 Score=93.10 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=60.0
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
.|+|.|+|.|.+..+. .+.+||||++++... +....++||.++++++||+|| |.|.|. .
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~~~~kT~v~~~~~nP~wn-e~f~f~i~ 77 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD---KSKSTRRKTSVKKDNLNPVFD-ETFEFPVS 77 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC---CCCCceEecccccCCCCCEEC-eEEEEecC
Confidence 4666777766664432 234899999999443 345678899999999999999 999999 6
Q ss_pred CCCCCCCceEEEEEeccC
Q 008661 235 SEKSPKVADNFEPINIEG 252 (558)
Q Consensus 235 ~e~l~~v~leveV~D~dG 252 (558)
..++....+.++|||.+.
T Consensus 78 ~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 78 LEELKRRTLDVAVKNSKS 95 (127)
T ss_pred HHHhcCCEEEEEEEECCc
Confidence 667777899999999874
No 141
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.80 E-value=7.2e-09 Score=115.37 Aligned_cols=147 Identities=20% Similarity=0.265 Sum_probs=110.1
Q ss_pred cCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCc
Q 008661 37 EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPK 112 (558)
Q Consensus 37 ~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp----~k~KTkVikkTlNPv 112 (558)
|-+.-.+|-...+++.-.+...+.-..+...+.+.+++++++.+.+ ++.+||||.+.+.. ...+|+++++|.+|.
T Consensus 102 W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~ 180 (800)
T KOG2059|consen 102 WFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQ 180 (800)
T ss_pred ceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcc
Confidence 3344445555556555444444444455566778888888887776 55699999999854 346999999999999
Q ss_pred cceEEEEeeccCC--------------CCceEEEEEee-cCCCC-CCccEEEEEecccccCCCceeeeeecCCC------
Q 008661 113 WHEEFNIPISTWD--------------SPNVLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------ 170 (558)
Q Consensus 113 WnEtF~F~V~~~e--------------~~~tL~V~V~D-~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k------ 170 (558)
|+|.|.|.+.... ....|++++|+ ++... ++|+|++.+++..+........||.|++.
T Consensus 181 ~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~ 260 (800)
T KOG2059|consen 181 FDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKS 260 (800)
T ss_pred hhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccC
Confidence 9999999987530 12368999998 45554 99999999999999877778999999863
Q ss_pred ----CceEEEEEEEEEec
Q 008661 171 ----KIGRLHLAITVLEE 184 (558)
Q Consensus 171 ----~~GeL~LsL~y~p~ 184 (558)
..|.+++.++|...
T Consensus 261 ~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 261 SDGGDLGSLRLNVTYTED 278 (800)
T ss_pred CCCCCccceeeeEEeeec
Confidence 34889999998764
No 142
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.79 E-value=8.5e-09 Score=92.36 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=57.9
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
+|+|+++|.|.+..+. .+.+|||+++++.+. + .+++||.++++++||+|| |.|.|. +
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~--~~~~kT~v~~~t~~P~wn-e~f~f~v~ 75 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD---R--SNTKQSKIHKKTLNPEFD-ESFVFEVP 75 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC---C--CCcEeCceEcCCCCCCcc-cEEEEeCC
Confidence 4666666666654432 234899999999432 1 245799999999999999 999999 6
Q ss_pred CCCCCCCceEEEEEeccCc
Q 008661 235 SEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 235 ~e~l~~v~leveV~D~dG~ 253 (558)
..++....+.++|||++..
T Consensus 76 ~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 76 PQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred HHHhCCCEEEEEEEECCCC
Confidence 6777788999999999843
No 143
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.73 E-value=1.6e-08 Score=91.11 Aligned_cols=60 Identities=15% Similarity=0.000 Sum_probs=48.1
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~ 253 (558)
+.+||||+++|.+. ..+..++||.++++++||+|| |.|.|. +.++++. .+.++|||+++.
T Consensus 30 g~~dpYVkv~l~p~---~~~~~~~kT~v~~~t~~P~~n-E~F~f~v~~~~~~~-~l~v~V~~~~~~ 90 (119)
T cd08685 30 GTCNSYVKISLSPD---KEVRFRQKTSTVPDSANPLFH-ETFSFDVNERDYQK-RLLVTVWNKLSK 90 (119)
T ss_pred CCCCeeEEEEEEeC---CCCcceEeCccccCCCCCccc-cEEEEEcChHHhCC-EEEEEEECCCCC
Confidence 34799999999543 445567899999999999999 999999 5555544 578999998854
No 144
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.73 E-value=5.3e-08 Score=88.48 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=52.5
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCC-CCCCCceEEEEEecc--Ccccc-ceE
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSE-KSPKVADNFEPINIE--GQQET-GIW 259 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e-~l~~v~leveV~D~d--G~~e~-Gv~ 259 (558)
+.+||||+++|... ..+.+.+++||.++.+|+||+|| |.|.|. +.+ .+....+.|.|||++ +.++. |..
T Consensus 18 g~~DPYVkV~l~g~-~~~~k~~k~kTkv~~~tlnPvwN-E~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~ 91 (120)
T cd08395 18 GMFRPFVEVNLIGP-HLSDKKRKFATKSKNNNWSPKYN-ETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVT 91 (120)
T ss_pred CCCCCEEEEEEecC-CCcccccEeeeEEecCCCCCccC-cEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEE
Confidence 66899999999421 11244556799999999999999 999999 543 677788999999997 33443 544
No 145
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.72 E-value=2.1e-08 Score=89.14 Aligned_cols=60 Identities=8% Similarity=0.064 Sum_probs=49.0
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG 252 (558)
+..||||++++.+. +....++||.++++++||+|| |.|.|. +..++....+.++|||++.
T Consensus 34 ~~~dpyv~v~l~~~---~~~~~~~kT~v~~~t~~P~wn-e~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 34 KRSNPYVKVYLLPD---KSKQSKRKTSVKKNTTNPVFN-ETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred CCCCcEEEEEEecC---CCcCceeeccccCCCCCCccc-ceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 35899999999433 333457899999999999999 999999 6566677889999999874
No 146
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=5e-08 Score=87.04 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=71.1
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCC
Q 008661 68 ARVEVVEASDMKPSD---LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 143 (558)
Q Consensus 68 L~VtVieArdL~~~D---~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDD 143 (558)
|.|+|..|++|.-.+ +.+.+||||.|+++.. +.+|++. .||.|||+|.|.+. ....+.|.|||...-..-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 679999999998777 5788999999999884 8888874 79999999999995 467999999998654456
Q ss_pred ccEEEEEecccccC
Q 008661 144 TLGDCTINISDLRD 157 (558)
Q Consensus 144 fIGev~IpL~eL~~ 157 (558)
.||..-+.|.+|..
T Consensus 75 Pi~llW~~~sdi~E 88 (109)
T cd08689 75 PVGLLWLRLSDIAE 88 (109)
T ss_pred ceeeehhhHHHHHH
Confidence 78999999888753
No 147
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.67 E-value=2.6e-08 Score=90.10 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=59.2
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-- 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-- 233 (558)
.|+|+|+|.|.+...+ .+..||||++++.+. +.+++||.++++ +||+|| |.|.|.
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~-----~~~~~kTkv~~~-~nP~fn-E~F~f~~i 74 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS-----KKQRAKTKVQRG-PNPVFN-ETFTFSRV 74 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC-----CcceeecccccC-CCCccc-CEEEECCC
Confidence 5888888888776544 133789999988443 235689999888 999999 999996
Q ss_pred CCCCCCCCceEEEEEeccCc
Q 008661 234 SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 234 p~e~l~~v~leveV~D~dG~ 253 (558)
+.+++....+.++|||++..
T Consensus 75 ~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 75 EPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CHHHhccCEEEEEEEECCCc
Confidence 56788899999999999843
No 148
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.9e-08 Score=102.91 Aligned_cols=102 Identities=27% Similarity=0.433 Sum_probs=89.9
Q ss_pred CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661 52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 125 (558)
Q Consensus 52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e- 125 (558)
.+....+|.|......|.|++++|..|..+|.+|.+||||+.++.+ .+.+|.+.++|++|.||+.|.|.+.+..
T Consensus 219 rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 219 RGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred ccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 4567789999999999999999999999999999999999999976 4679999999999999999999998654
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecc
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINIS 153 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~ 153 (558)
....+.|.|||++..+ .+++|-+...+-
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred hcceEEEeecccCCCcCccCCCccccccc
Confidence 3558999999999986 889987766544
No 149
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.64 E-value=5.6e-08 Score=86.91 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=55.3
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-- 233 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-- 233 (558)
.|+|+|++.|.+.... .+.+||||++++... + ..++||.++++++||+|| |.|.|.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~---~--~~~~kT~v~~~t~~P~Wn-e~f~f~~~ 75 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD---K--KHKLETKVKRKNLNPHWN-ETFLFEGF 75 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCC---C--CcceeeeeecCCCCCccc-eeEEEccc
Confidence 4666677666544322 234899999999432 1 235799999999999999 999996
Q ss_pred CCCCCCCCceEEEEEeccC
Q 008661 234 SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 234 p~e~l~~v~leveV~D~dG 252 (558)
+.+.+....+.++|||++.
T Consensus 76 ~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 76 PYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CHHHhCCCEEEEEEEeCCC
Confidence 4555667789999999884
No 150
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.61 E-value=4.7e-08 Score=87.05 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~ 253 (558)
..||||++++.+. + .+++||.++++++||+|| |.|.|. +..+++...+.|+|||+++.
T Consensus 35 ~~dpyV~v~l~~~---~--~~~~~T~v~~~~~~P~wn-e~f~f~i~~~~l~~~~l~i~v~d~~~~ 93 (123)
T cd08390 35 HCDPFVKVCLLPD---E--RRSLQSKVKRKTQNPNFD-ETFVFQVSFKELQRRTLRLSVYDVDRF 93 (123)
T ss_pred CCCcEEEEEEeeC---C--CCceEeeeEcCCCCCccc-eEEEEEcCHHHhcccEEEEEEEECCcC
Confidence 4799999999433 2 234789999999999999 999999 66677778999999998854
No 151
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.60 E-value=2e-07 Score=105.05 Aligned_cols=116 Identities=23% Similarity=0.338 Sum_probs=90.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEE-EeeeecCCCCCccc-eEEEEeeccCCCCceEEEEEeecC
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRF-RTKTQRKTLSPKWH-EEFNIPISTWDSPNVLVIEVRDKD 138 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~-KTkVikkTlNPvWn-EtF~F~V~~~e~~~tL~V~V~D~D 138 (558)
-.|.|.|+.|++|+... .|.+.|||.|.+.. .++ +|.|..+++||+|| |.|+|.|... .-..|+|.|||.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEED 1142 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEeccc
Confidence 46889999999998443 45677999999843 344 55567799999999 9999999974 3458999999999
Q ss_pred CCC-CCccEEEEEecccccCCCceeeeeecCCCC-----ceEEEEEEEEEeccC
Q 008661 139 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEESA 186 (558)
Q Consensus 139 ~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~-----~GeL~LsL~y~p~~~ 186 (558)
.++ ..|||++.+|+..+..+-+ -++|++.. ...|++.+...+..+
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~GfR---sVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGFR---SVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred ccCCcceeeeeecchhhhhccce---eeecccCchhhhhhhhheeeeEeccccC
Confidence 999 6699999999999987643 36776642 356667776666544
No 152
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.58 E-value=5.2e-08 Score=104.02 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=63.3
Q ss_pred CceEEEEEEEEEecc---------C-----CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCC
Q 008661 171 KIGRLHLAITVLEES---------A-----KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 236 (558)
Q Consensus 171 ~~GeL~LsL~y~p~~---------~-----~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e 236 (558)
.+|+|.|.+...... + .-+++|||||+.|.+ ..+-..|+||..++.||||+|| |.|.|++..
T Consensus 167 ~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliP---D~~~~sKqKTkTik~~LNP~wN-Etftf~Lkp 242 (683)
T KOG0696|consen 167 RRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIP---DPKNESKQKTKTIKATLNPVWN-ETFTFKLKP 242 (683)
T ss_pred hcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEecc---CCcchhhhhhhhhhhhcCcccc-ceeEEeccc
Confidence 468877776653321 1 135699999999955 4666788899999999999999 999999666
Q ss_pred CCCCCceEEEEEeccCcccc
Q 008661 237 KSPKVADNFEPINIEGQQET 256 (558)
Q Consensus 237 ~l~~v~leveV~D~dG~~e~ 256 (558)
+.....+.++|||||.....
T Consensus 243 ~DkdrRlsiEvWDWDrTsRN 262 (683)
T KOG0696|consen 243 SDKDRRLSIEVWDWDRTSRN 262 (683)
T ss_pred ccccceeEEEEecccccccc
Confidence 66677888999999965543
No 153
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.57 E-value=1.5e-07 Score=89.32 Aligned_cols=77 Identities=14% Similarity=0.005 Sum_probs=57.8
Q ss_pred ceEEEEEEEEE---eccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCC------CCCCC
Q 008661 172 IGRLHLAITVL---EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSE------KSPKV 241 (558)
Q Consensus 172 ~GeL~LsL~y~---p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e------~l~~v 241 (558)
.|+|.+..+-- +..-.-+.+|||||+++ .+.+....+.||.++++|+||+|| |.|.|. ... .+...
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l---~~p~~~~~k~KT~v~k~TlnPvfN-E~f~f~I~~~~~~~~R~l~~~ 78 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEF---PYPNEEPQSGKTSTIKDTNSPEYN-ESFKLNINRKHRSFQRVFKRH 78 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEE---ecCCCCCceeecCcccCCCCCccc-ceEEEEeccccchhhhhccCC
Confidence 45666555432 22222334899999998 444567788999999999999999 999999 443 46678
Q ss_pred ceEEEEEeccC
Q 008661 242 ADNFEPINIEG 252 (558)
Q Consensus 242 ~leveV~D~dG 252 (558)
++.++|||+++
T Consensus 79 ~L~~~V~d~~~ 89 (155)
T cd08690 79 GLKFEVYHKGG 89 (155)
T ss_pred cEEEEEEeCCC
Confidence 89999999986
No 154
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.53 E-value=1.9e-07 Score=83.54 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=48.4
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~ 253 (558)
+.+|||+++++... .....++||.++++++||+|| +.|.|. +..++....+.+++||++..
T Consensus 34 ~~~dpyv~v~~~~~---~~~~~~~rT~v~~~~~~P~Wn-e~f~f~~~~~~~~~~~~l~~~v~d~~~~ 96 (123)
T cd04035 34 GLSDPYVKLNLLPG---ASKATKLRTKTVHKTRNPEFN-ETLTYYGITEEDIQRKTLRLLVLDEDRF 96 (123)
T ss_pred CCCCceEEEEEecC---CCCCCceeeeeecCCCCCCcc-ceEEEcCCCHHHhCCCEEEEEEEEcCCc
Confidence 45899999999433 334567899999999999999 999996 44556667899999998754
No 155
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.52 E-value=2.1e-07 Score=84.96 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=56.8
Q ss_pred ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661 172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 234 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p 234 (558)
.|+|.+++.|.+.... .+.+||||++++..... .....++||.++++|+||+|| |.|.|. .
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~-~~~~~~~kT~v~~~t~nP~wn-E~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHL-FPDVPTPKTQVKKKTLFPLFD-ESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCc-CccccccccccCcCCCCCccC-CEEEEEec
Confidence 4666666666553322 23489999999943210 013467899999999999999 999999 3
Q ss_pred C--CCCCCCceEEEEEeccCc
Q 008661 235 S--EKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 235 ~--e~l~~v~leveV~D~dG~ 253 (558)
. ..+....+.++|||++..
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~ 100 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLL 100 (133)
T ss_pred hhhcccCCCEEEEEEEecCCC
Confidence 3 234567899999998743
No 156
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.46 E-value=9.9e-07 Score=97.10 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=113.2
Q ss_pred eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC----C-CCccEEEEEecccccCCCceeeeeecCC---
Q 008661 98 YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----V-DDTLGDCTINISDLRDGQRHDMWIPLQN--- 169 (558)
Q Consensus 98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~----s-DDfIGev~IpL~eL~~~~~~e~W~~L~~--- 169 (558)
...+|.++++.+||.|-+.|.+... ++..+.|+|.++|.+.. . .+|+|++...|..+........-+-|++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~-fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~ 119 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYR-FEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN 119 (529)
T ss_pred cccceeeeeccCCccceeeechhhe-eeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence 3458999999999999999988877 46788999999998765 2 7899999999998876544333333332
Q ss_pred CCceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec
Q 008661 170 IKIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 233 (558)
Q Consensus 170 k~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe 233 (558)
...|+|.+.+.-...... .+.+|||..++-... .+....-++|++.++|+||.|-.......
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~--d~s~~~~~~tEv~~n~l~p~w~~~~i~~~ 197 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVD--DGSTQMLYRTEVVKNTLNPQWAPFSISLQ 197 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecC--CCceeeccccceeccCCCCcccccccchh
Confidence 356777776664332211 233899998887332 56677789999999999999984444444
Q ss_pred -CCCCCCCCceEEEEEeccCccc
Q 008661 234 -SSEKSPKVADNFEPINIEGQQE 255 (558)
Q Consensus 234 -p~e~l~~v~leveV~D~dG~~e 255 (558)
.+......++.+++||++....
T Consensus 198 ~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 198 SLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred hhcccCCCCceEEEEeccCCCCC
Confidence 5565667888999999985544
No 157
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.46 E-value=7.4e-07 Score=78.76 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=46.0
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCC-CCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEK-SPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~-l~~v~leveV~D~dG~ 253 (558)
+.+|||+++++... + ..++||.++++++||+|| |.|.|. ...+ .....+.++|||++..
T Consensus 21 ~~~Dpyv~v~~~~~---~--~~~~kT~v~~~t~nP~Wn-e~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 21 GSSDPYVTASFAKF---G--KPLYSTRIIRKDLNPVWE-ETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred CCCCccEEEEEccC---C--CccEeeeeECCCCCCccc-eeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 56899999999432 2 245799999999999999 999997 3333 3456899999999843
No 158
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.34 E-value=2.1e-06 Score=79.72 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=62.8
Q ss_pred CCCCCCcceEEecccCCCCce--------eeEEEeEecCCCCCCcc-CCCceeec-CCCCCCCCceEEEEEeccCccc--
Q 008661 188 QGVDSPCDGGTLNKEGMGNKE--------DQSNKEDIRESFANETT-DKGSFSSV-SSEKSPKVADNFEPINIEGQQE-- 255 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~kr--------lkKKKT~VkK~TlNPvw-N~E~F~Fe-p~e~l~~v~leveV~D~dG~~e-- 255 (558)
.+.+|||+++.+... .+. .+++||.++++++||+| | |.|.|. +.+ -.+.++|||+++...
T Consensus 18 fg~~DPyvki~~~~~---~~~~~~~~~~~~~~~kT~v~~~tlnP~W~n-E~f~f~v~~~----~~L~v~V~D~~~~~~~~ 89 (137)
T cd08691 18 FFNPDPYVKISIQPG---KRHIFPALPHHGQECRTSIVENTINPVWHR-EQFVFVGLPT----DVLEIEVKDKFAKSRPI 89 (137)
T ss_pred CCCCCceEEEEEECC---CcccccccccccceeeeeeEcCCCCCceEc-eEEEEEcCCC----CEEEEEEEecCCCCCcc
Confidence 355899999999433 222 35789999999999999 7 999998 322 368999999875422
Q ss_pred ---c-ceEEecCCccccccCccccCCCCCcccceeecCCCCccCCCCCCCCCC
Q 008661 256 ---T-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSL 304 (558)
Q Consensus 256 ---~-Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~~~~~~~~~~~~~~~ 304 (558)
. |-+ .-+-+.+. .+.-.....+|+++. +.++.+.++|.+
T Consensus 90 ~~d~lG~~-~i~l~~l~------~~~~~~~~~~~~~l~---k~~~~s~v~G~~ 132 (137)
T cd08691 90 IRRFLGKL-SIPVQRLL------ERHAIGDQELSYTLG---RRTPTDHVSGQL 132 (137)
T ss_pred CCceEEEE-EEEHHHhc------ccccCCceEEEEECC---cCCCCCcEEEEE
Confidence 1 332 22232221 111233467788776 445566665544
No 159
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.34 E-value=1.4e-06 Score=78.82 Aligned_cols=86 Identities=8% Similarity=0.005 Sum_probs=59.6
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC--cccc-ceE-EecC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VHQP 263 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG--~~e~-Gv~-v~~p 263 (558)
.+.+|||+++++. ....++||.++++++||+|| |.|.|. ........+.++|||++. .++. |-. +...
T Consensus 18 ~g~~DPYv~v~~~------~~~~~~kT~~v~~t~nP~Wn-e~f~f~-~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~ 89 (124)
T cd04037 18 NGKSDPYLKIKLG------KKKINDRDNYIPNTLNPVFG-KMFELE-ATLPGNSILKISVMDYDLLGSDDLIGETVIDLE 89 (124)
T ss_pred CCCCCcEEEEEEC------CeeccceeeEEECCCCCccc-eEEEEE-ecCCCCCEEEEEEEECCCCCCCceeEEEEEeec
Confidence 4568999999992 22244678888899999999 999997 222345678999999984 3333 544 3222
Q ss_pred CccccccCccccCCCCCc
Q 008661 264 GSEVAQTWEPRKGKNRRL 281 (558)
Q Consensus 264 gt~~~~hW~~~l~~~r~~ 281 (558)
.-...+||..|+..+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (124)
T cd04037 90 DRFFSKHRATCGLPPTYE 107 (124)
T ss_pred ccccchHHHhccCCCccc
Confidence 222358999999888666
No 160
>PLN02352 phospholipase D epsilon
Probab=98.34 E-value=3e-06 Score=97.06 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=88.2
Q ss_pred ceEEEEEEEEecCCCCC----CC-CCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661 65 VAYARVEVVEASDMKPS----DL-NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 138 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~----D~-~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D 138 (558)
.|.|.++|++|+-+... .. ....||||.|.++. ...+| .+.-||+|+|.|.+.+... ....+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~-- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT-- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec--
Confidence 68999999999843221 11 11239999999987 45688 5566999999999999862 22579999988
Q ss_pred CCCCCccEEEEEecccccCCCc-eeeeeecCCCC----c-eEEEEEEEEEeccC
Q 008661 139 HFVDDTLGDCTINISDLRDGQR-HDMWIPLQNIK----I-GRLHLAITVLEESA 186 (558)
Q Consensus 139 ~~sDDfIGev~IpL~eL~~~~~-~e~W~~L~~k~----~-GeL~LsL~y~p~~~ 186 (558)
+..+||.+.||+.+|..+.. .+.||++.+.. . ..|+++|.|.+...
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 46799999999999988866 89999996521 3 48999999998754
No 161
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=98.33 E-value=1.5e-06 Score=78.35 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=46.1
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC---CCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS---EKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~---e~l~~v~leveV~D~dG~ 253 (558)
.+.+||||++.+. ..++||.++++++||+|| |.|.|. +. +++....+.++|||++..
T Consensus 17 ~g~~dpYv~v~l~--------~~~~kT~v~~~t~nP~Wn-e~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 17 SGTNDAYVIIQLG--------KEKYSTSVKEKTTSPVWK-EECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CcCCCceEEEEEC--------CeeeeeeeecCCCCCEeC-ceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 4458999999992 145799999999999999 999998 33 346677899999999843
No 162
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.32 E-value=1.9e-06 Score=78.45 Aligned_cols=66 Identities=5% Similarity=-0.144 Sum_probs=49.4
Q ss_pred EEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661 179 ITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 251 (558)
Q Consensus 179 L~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d 251 (558)
+......+-.+.+||||++.++.. +....+.||.++++|+||+|| |.|.|+.. ...++.+.|||+.
T Consensus 3 V~V~~A~~L~~~sDPYV~l~v~~~---~~~~~~~KTk~i~~TlnPvWn-E~F~i~l~---~s~~L~~~v~d~~ 68 (118)
T cd08686 3 VIVHSAQGFKQSANLYCTLEVDSF---GYFVKKAKTRVCRDTTEPNWN-EEFEIELE---GSQTLRILCYEKC 68 (118)
T ss_pred EEEEeCCCCCCCCCCEEEEEEcCc---cccceeeeeeeecCCCCCccc-eEEEEEeC---CCCEEEEEEEEcc
Confidence 444444444556899999999543 233467899999999999999 99999932 2448999999983
No 163
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.30 E-value=2.1e-06 Score=80.73 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=48.4
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C-------------CCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S-------------SEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p-------------~e~l~~v~leveV~D~dG~ 253 (558)
+.+||||++++.. ...+..++||.++++|+||+|| |.|.|. . .+++....+.++|||++..
T Consensus 17 g~sDPYV~V~l~~---~~~k~~~~kT~v~~~t~nP~wN-E~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~ 91 (148)
T cd04010 17 GTCDPYASVTLIY---SNKKQDTKRTKVKKKTNNPQFD-EAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG 91 (148)
T ss_pred CCCCceEEEEEeC---CcccCcccCCccEeCCCCCccc-eEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC
Confidence 4589999999943 2344567899999999999999 999998 2 2345567899999998854
No 164
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.28 E-value=3.1e-06 Score=75.17 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
+|||+++++. + +++||.++++++||+|| |.|.|..........+.|+|||++..
T Consensus 26 ~DPYv~v~~~------~--~~~kT~v~~~t~nPvWn-e~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 26 MDPFVIISFG------R--RVFRTSWRRHTLNPVFN-ERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred cCceEEEEEC------C--EeEeeeeecCCCCCccc-ceEEEEEeCccCCCEEEEEEEECCCC
Confidence 7999999982 2 35689999999999999 99999843434457899999999843
No 165
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5e-07 Score=95.23 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=106.8
Q ss_pred cHHHHHHHHHHHH--HHhccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEE
Q 008661 18 GIAGWLDKLLSIA--FEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQ 94 (558)
Q Consensus 18 GLs~fl~~lI~~a--l~~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~-~G~sDPYVkV~ 94 (558)
-+..|++.+-... -.+++..|+|-.|.+.. ....|.|.|.|++|++|..+.. ...++|||+||
T Consensus 233 ~~~~FvDglGP~q~VgRq~la~P~mg~iq~~~--------------~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVY 298 (405)
T KOG2060|consen 233 PRGDFVDGLGPAQLVGRQTLAAPNMGDIQIAL--------------MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVY 298 (405)
T ss_pred chhhhhcccCchhhhhhhhhcCcccccchhhh--------------hcccCceeEEEEecccccccCCcccccCceeEEE
Confidence 3456777776443 34457777776555442 3467899999999999987653 33699999999
Q ss_pred eCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEe-ecCCCC-CCccEEEEEecccccCCC-ceeeeee
Q 008661 95 LGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIP 166 (558)
Q Consensus 95 Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~-D~D~~s-DDfIGev~IpL~eL~~~~-~~e~W~~ 166 (558)
+.. .+.+|+..++|+.|.|.....|.-.+ ....|.+.|| |+.++- +.|+|.+++-|.+|.... ....||+
T Consensus 299 lL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyK 376 (405)
T KOG2060|consen 299 LLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYK 376 (405)
T ss_pred EcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeee
Confidence 966 46799999999999999888887664 5779999999 677776 789999999999998776 6789999
Q ss_pred cCC
Q 008661 167 LQN 169 (558)
Q Consensus 167 L~~ 169 (558)
|.+
T Consensus 377 lfg 379 (405)
T KOG2060|consen 377 LFG 379 (405)
T ss_pred ccC
Confidence 985
No 166
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.27 E-value=5.1e-07 Score=103.93 Aligned_cols=91 Identities=37% Similarity=0.487 Sum_probs=80.7
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661 63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 140 (558)
Q Consensus 63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k--~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~ 140 (558)
+....++|+|++|.+|.+.|.+|.+||||++.++... -++..+.+|+||+|.+.|.+.... +..+.|.+.|||+|.+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l-p~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL-PFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc-chhhcceeEEEEeecc
Confidence 4456778999999999999999999999999999865 477789999999999999988773 4577899999999999
Q ss_pred C-CCccEEEEEeccc
Q 008661 141 V-DDTLGDCTINISD 154 (558)
Q Consensus 141 s-DDfIGev~IpL~e 154 (558)
+ |+.||+..++|+.
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 8 9999999999885
No 167
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.26 E-value=2.7e-06 Score=78.12 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=51.8
Q ss_pred CceEEEEEEEEEecc--CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661 171 KIGRLHLAITVLEES--AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI 248 (558)
Q Consensus 171 ~~GeL~LsL~y~p~~--~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~ 248 (558)
..|.|.|.|.--..- ...+.+|||+++++. ++ ++||.++++++||+|| |.|.|..........+.|+||
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~-----~~---~~kT~vi~~t~nPvWN-E~F~f~~~~~~~~~~L~v~V~ 96 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFG-----GQ---EKRTEVIWNNNNPRWN-ATFDFGSVELSPGGKLRFEVW 96 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEEC-----Cc---cccCceecCCCCCcCC-CEEEEecccCCCCCEEEEEEE
Confidence 345555555432211 224458999999982 22 7899999999999999 999996222235678999999
Q ss_pred eccCc
Q 008661 249 NIEGQ 253 (558)
Q Consensus 249 D~dG~ 253 (558)
|++..
T Consensus 97 D~d~~ 101 (127)
T cd04032 97 DRDNG 101 (127)
T ss_pred eCCCC
Confidence 99843
No 168
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.26 E-value=4e-06 Score=73.88 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=51.1
Q ss_pred EEEEEEEEeccCC-CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec---CCCCCCCCceEEEEEec
Q 008661 175 LHLAITVLEESAK-QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV---SSEKSPKVADNFEPINI 250 (558)
Q Consensus 175 L~LsL~y~p~~~~-l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe---p~e~l~~v~leveV~D~ 250 (558)
..|++.......- .+..||||++.+.. +++||.++++++||+|| |.|.|. +..++....+.++|||+
T Consensus 4 ~~l~V~v~~a~~L~~~~~dpyv~v~~~~--------~~~kT~~~~~t~nP~wn-e~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 4 FQVRVRVIEARQLVGGNIDPVVKVEVGG--------QKKYTSVKKGTNCPFYN-EYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred EEEEEEEEEcccCCCCCCCCEEEEEECC--------EeeeeeEEeccCCCccc-cEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 3445554443321 34589999999931 35789999999999999 999997 33445567899999999
Q ss_pred cCc
Q 008661 251 EGQ 253 (558)
Q Consensus 251 dG~ 253 (558)
+..
T Consensus 75 ~~~ 77 (111)
T cd04011 75 RSL 77 (111)
T ss_pred ccc
Confidence 853
No 169
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.24 E-value=5.8e-06 Score=75.63 Aligned_cols=87 Identities=13% Similarity=0.010 Sum_probs=58.9
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec---CCC---CC--CCCceEEEEEeccCcc--cc-
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV---SSE---KS--PKVADNFEPINIEGQQ--ET- 256 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe---p~e---~l--~~v~leveV~D~dG~~--e~- 256 (558)
.+.+|||+++.+. ..++||.++++|+||+|| |.|.|. +.. .+ ....+.++|||++... +.
T Consensus 19 ~g~~dpyv~v~~~--------~~~~kT~v~~~t~nP~Wn-e~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~i 89 (135)
T cd04017 19 SGLSDPFARVSFL--------NQSQETEVIKETLSPTWD-QTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFL 89 (135)
T ss_pred CCCCCCEEEEEEC--------CeeeEeeeEcCCCCCccC-cEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccc
Confidence 4568999999992 136789999999999999 999986 111 12 1246889999998543 33
Q ss_pred ceEEecCCccccccCccccCCCCCcccceeecC
Q 008661 257 GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVP 289 (558)
Q Consensus 257 Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~ 289 (558)
|-....|......-| ++.+.+|||.+-
T Consensus 90 G~~~i~~~~~~~~~~------~~~~~~~W~~L~ 116 (135)
T cd04017 90 GRSVAKPLVKLDLEE------DFPPKLQWFPIY 116 (135)
T ss_pred eEEEeeeeeecccCC------CCCCCceEEEee
Confidence 543222332222112 788999999774
No 170
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.20 E-value=6.6e-06 Score=74.36 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=46.5
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
+..||||++.+... +....++||.++++++||.|| |.|.|..........+.++|||++..
T Consensus 32 ~~~dpyv~v~~~~~---~~~~~~~rT~v~~~~~~P~wn-e~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 32 GLSDPYVKLKLIPD---PKNETKQKTKTIKKTLNPVWN-ETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CCCCCcEEEEEEcC---CCCCceecceeecCCCCCCcc-ceEEEeCCchhcCCEEEEEEEECCCC
Confidence 45899999999432 223456899999999999999 99999833332456799999998743
No 171
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.18 E-value=2.8e-06 Score=75.88 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=46.8
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG 252 (558)
.+.+|||+++++.... .++...++||.++++++||+|| |.|.|. ..+.. ..+.++|||++.
T Consensus 18 ~g~~DPyv~v~~~~~~-~~~~~~~~kT~vi~~t~nP~wn-e~f~f~~~~~~~--~~l~~~V~d~d~ 79 (120)
T cd04048 18 LSKSDPFVVVYVKTGG-SGQWVEIGRTEVIKNNLNPDFV-TTFTVDYYFEEV--QKLRFEVYDVDS 79 (120)
T ss_pred CCCCCcEEEEEEEcCC-CCceEEeccEeEeCCCCCCCce-EEEEEEEEeEee--eEEEEEEEEecC
Confidence 4568999999995431 1245677899999999999999 899997 33333 368899999874
No 172
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.18 E-value=3.6e-06 Score=79.52 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=57.5
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc--ccc-ceE------
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW------ 259 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~--~e~-Gv~------ 259 (558)
+.+||||++.+. + ++.||.++++++||+|| |.|.|..........+.++|||+|.. ++. |..
T Consensus 33 ~~~DPYV~V~~~-----g---~~~kT~v~~~t~nPvWN-E~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 33 ELVDPYVEVSFA-----G---QKVKTSVKKNSYNPEWN-EQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CCcCcEEEEEEC-----C---EeeecceEcCCCCCCcc-eEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 358999999982 2 24689999999999999 99999722222345789999999853 333 533
Q ss_pred EecCCcc-----ccccCccccCCCCC
Q 008661 260 VHQPGSE-----VAQTWEPRKGKNRR 280 (558)
Q Consensus 260 v~~pgt~-----~~~hW~~~l~~~r~ 280 (558)
+...+.+ ..-||-.+.+.||.
T Consensus 104 l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 104 ISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred hccCCccccCCccCceEEEeecCccc
Confidence 2222222 12488888888876
No 173
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.16 E-value=1.1e-05 Score=74.37 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=51.5
Q ss_pred ceEEEEEEEEEecc---CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661 172 IGRLHLAITVLEES---AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI 248 (558)
Q Consensus 172 ~GeL~LsL~y~p~~---~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~ 248 (558)
.|.|.+.+.--..- ...+.+|||+++++.. .++||.++++++||+|| |.|.|.. ..+....+.++||
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--------~~~kT~vi~~t~nP~Wn-e~f~f~v-~~~~~~~l~i~V~ 83 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--------QEHKTKVVSDTLNPKWN-SSMQFFV-KDLEQDVLCITVF 83 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--------EeeeccccCCCCCCccC-ceEEEEe-cCccCCEEEEEEE
Confidence 47766665432222 2245689999999921 35899999999999999 9999983 2344567899999
Q ss_pred eccC
Q 008661 249 NIEG 252 (558)
Q Consensus 249 D~dG 252 (558)
|++.
T Consensus 84 D~d~ 87 (136)
T cd08375 84 DRDF 87 (136)
T ss_pred ECCC
Confidence 9884
No 174
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.12 E-value=3.6e-06 Score=74.24 Aligned_cols=55 Identities=9% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCcc-CCCceeec-CCCCCCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSV-SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvw-N~E~F~Fe-p~e~l~~v~leveV~D~dG 252 (558)
+.+|||+++++. + .++||.++++++||+| | |.|.|. +..++....+.++|||++.
T Consensus 19 ~~~Dpyv~v~~~-----~---~~~kT~v~~~~~nP~W~n-e~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 19 DLTDAFVEVKFG-----S---TTYKTDVVKKSLNPVWNS-EWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CCCCceEEEEEC-----C---eeEecceecCCCCCcccC-cEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 458999999992 1 6789999999999999 8 999999 6666677899999999884
No 175
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.10 E-value=1.4e-05 Score=73.88 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC-------------CCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS-------------EKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~-------------e~l~~v~leveV~D~dG~ 253 (558)
.+..||||++++... ....++||.++++++||+|| |.|.|. .. +.+....+.++|||++..
T Consensus 16 ~g~~dPyv~v~~~~~----~~~~~~rT~vv~~t~nP~Wn-e~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~ 90 (137)
T cd08675 16 NGTCDPFARVTLNYS----SKTDTKRTKVKKKTNNPRFD-EAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMV 90 (137)
T ss_pred CCCCCcEEEEEEecC----CcCCeeccceeeCCCCCCcc-eEEEEEccccccccccccccccccccccEEEEEEEcCCcC
Confidence 345899999999432 22356899999999999999 999999 22 244778899999998854
Q ss_pred --ccc-ceEEecCCccccccCccccCCCCCcccceeecCCCCccCCCCCCCCCC
Q 008661 254 --QET-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSL 304 (558)
Q Consensus 254 --~e~-Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~~~~~~~~~~~~~~~ 304 (558)
++- |.... +-.+.. .+.+..+|+.+......-.+++..|||
T Consensus 91 ~~~~~IG~~~i-~l~~l~---------~~~~~~~W~~L~~~~~~~~~~~~~~~~ 134 (137)
T cd08675 91 SGDDFLGEVRI-PLQGLQ---------QAGSHQAWYFLQPREAPGTRSSNDGSL 134 (137)
T ss_pred cCCcEEEEEEE-ehhhcc---------CCCcccceEecCCcCCCCCCccccCCC
Confidence 332 44321 222221 345668888777553322333444444
No 176
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.09 E-value=3e-06 Score=97.76 Aligned_cols=188 Identities=17% Similarity=0.137 Sum_probs=128.3
Q ss_pred ceeEeeecC-CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEee---ccC-----C
Q 008661 55 NWFSVDVKE-PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI---STW-----D 125 (558)
Q Consensus 55 l~fSL~Yd~-~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V---~~~-----e 125 (558)
..||..|.. ....|+++|.+|+.|.+.+..+.+|||+.+.+..+...|.++.+|+||.|+.+..|.- ... .
T Consensus 194 p~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 194 PEFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred CceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 346665544 4567899999999999999999999999999999999999999999999999988842 210 1
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC--CceEEEEEE--------------------EEE
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAI--------------------TVL 182 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k--~~GeL~LsL--------------------~y~ 182 (558)
....+.|+|||.++.+ ++|+|.+.....-... .+.-.|+++... -.|++.++. ..+
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~v 352 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLV 352 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccchhHHHHHHhhcCCCCCCCcccccceecc
Confidence 2347899999999998 9999997665442222 455667777432 123333222 122
Q ss_pred eccCC--------------------CCC---CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec----CC
Q 008661 183 EESAK--------------------QGV---DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV----SS 235 (558)
Q Consensus 183 p~~~~--------------------l~l---sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe----p~ 235 (558)
|...+ .++ ..|-+.+.+ ++.++. .-.+....-||.|+ ..|.+- |.
T Consensus 353 p~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~-----g~e~v~--s~~I~~~k~npnf~-s~~~~~~v~lpd 424 (1105)
T KOG1326|consen 353 PKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEF-----GGERVS--SFSIFNRKKNPNFP-SRVLGRLVILPD 424 (1105)
T ss_pred ccCCCcceeeeeeehhhhhhcccccccccccCCcceeEee-----CCceEe--eeeehhhhhCCCCc-eeEEEEEEeccc
Confidence 22211 111 234333333 344443 34445555788888 676554 88
Q ss_pred CCCCCCceEEEEEecc
Q 008661 236 EKSPKVADNFEPINIE 251 (558)
Q Consensus 236 e~l~~v~leveV~D~d 251 (558)
+++..-.+.+.|+|.+
T Consensus 425 ~e~Y~ppl~akvvd~~ 440 (1105)
T KOG1326|consen 425 EELYMPPLNAKVVDLR 440 (1105)
T ss_pred hHhhCccceeEEEecc
Confidence 8888889999999876
No 177
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.08 E-value=1.2e-05 Score=70.34 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
.+.+|||+++.+. + +++||.++++++||+|| |.|.|... ......+.++|+|.+.
T Consensus 18 ~~~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~Wn-e~f~f~v~-~~~~~~l~v~v~d~~~ 72 (105)
T cd04050 18 TKEPSPYVELTVG-----K---TTQKSKVKERTNNPVWE-EGFTFLVR-NPENQELEIEVKDDKT 72 (105)
T ss_pred CCCCCcEEEEEEC-----C---EEEeCccccCCCCCccc-ceEEEEeC-CCCCCEEEEEEEECCC
Confidence 4568999999992 2 57889999999999999 99999922 2233468999999877
No 178
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.08 E-value=1.7e-05 Score=75.08 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=54.9
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC--ccccceE-E--ec
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQETGIW-V--HQ 262 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG--~~e~Gv~-v--~~ 262 (558)
.+.+||||++.+... +..||.++++++||+|| |.|.|..... ...+.|+|+|++. .+.-|.. + ..
T Consensus 55 ~g~sDPYv~V~l~~~-------~~~rT~v~~~~~nP~Wn-E~F~~~~~~~--~~~l~~~V~d~d~~~~~~IG~~~i~l~~ 124 (158)
T cd04015 55 KITSDPYATVDLAGA-------RVARTRVIENSENPVWN-ESFHIYCAHY--ASHVEFTVKDNDVVGAQLIGRAYIPVED 124 (158)
T ss_pred CCCcCeEEEEEECCe-------EeeEEEEeCCCCCCccc-eEEEEEccCC--CCEEEEEEEeCCCcCCcEEEEEEEEhHH
Confidence 445899999999321 34689999999999999 9999972222 2468899999873 3222543 1 11
Q ss_pred -CCccccccCccccCCCCCc
Q 008661 263 -PGSEVAQTWEPRKGKNRRL 281 (558)
Q Consensus 263 -pgt~~~~hW~~~l~~~r~~ 281 (558)
...+...+|-+.....++|
T Consensus 125 l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 125 LLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred ccCCCCcceEEECcCCCCCC
Confidence 1222346788877655554
No 179
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=1.4e-05 Score=88.71 Aligned_cols=104 Identities=27% Similarity=0.451 Sum_probs=88.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEe-CC------eEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEe
Q 008661 65 VAYARVEVVEASDMKPSDLNGLADPYVKGQL-GP------YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVR 135 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~L-gp------~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~ 135 (558)
...++|.|+.|.+|+-. ..|.--|||.+.+ || .++.|+++.++-.|.|||+|.|.+.... ..-.|.|+|-
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 34788999999999754 3677889999998 54 4678999999999999999999987533 2347999999
Q ss_pred ecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661 136 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169 (558)
Q Consensus 136 D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~ 169 (558)
|+...+ |..+|-+.++|.++...+....|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 999888 8899999999999988888999999975
No 180
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.06 E-value=1.4e-05 Score=73.21 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=43.3
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+||||.+.+.. ++.||.++++++||+|| |.|.|...+. ...+.|+|||++..
T Consensus 21 ~g~sDPYv~i~~g~--------~~~rTk~~~~~~nP~Wn-E~f~f~v~~~--~~~l~v~V~d~d~~ 75 (126)
T cd08379 21 RGSTDAYCVAKYGP--------KWVRTRTVEDSSNPRWN-EQYTWPVYDP--CTVLTVGVFDNSQS 75 (126)
T ss_pred CCCCCeeEEEEECC--------EEeEcCcccCCCCCcce-eEEEEEecCC--CCEEEEEEEECCCc
Confidence 35589999999821 35689999999999999 9999983332 23799999998863
No 181
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.04 E-value=1.5e-05 Score=69.74 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=45.9
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec---CCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV---SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe---p~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++..+ .++...++||.++++++||+|| .|.|. .........+.++|||++..
T Consensus 18 ~~~~DPyv~v~~~~~--~~~~~~~~kT~vi~~t~nP~Wn--~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 18 FGKSDPFLEISRQSE--DGTWVLVYRTEVIKNTLNPVWK--PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred CCCCCeeEEEEEECC--CCCEEEEEeeeEeccCCCCceE--EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 456899999998432 2245677999999999999999 46665 22333367899999999843
No 182
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.02 E-value=8.7e-06 Score=73.48 Aligned_cols=55 Identities=7% Similarity=-0.117 Sum_probs=43.5
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
+.+|||+++.+.. .+++||.++++|+||+|| |.|.|...+. ...+.|.|||++..
T Consensus 20 g~sDpYv~v~l~~-------~~~~kT~v~~kt~~P~Wn-E~F~f~v~~~--~~~l~~~v~d~~~~ 74 (121)
T cd08401 20 KMRDCYCTVNLDQ-------EEVFRTKTVEKSLCPFFG-EDFYFEIPRT--FRHLSFYIYDRDVL 74 (121)
T ss_pred CCcCcEEEEEECC-------ccEEEeeEEECCCCCccC-CeEEEEcCCC--CCEEEEEEEECCCC
Confidence 3589999999922 135789999999999999 9999993332 35889999999854
No 183
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.00 E-value=3e-05 Score=72.91 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=56.7
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCC-CCCCccCCCceeecCCCCCCCCceEEEEEeccCc--ccc-ceEEecC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIWVHQP 263 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~-TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~--~e~-Gv~v~~p 263 (558)
.+.+||||++.+. + +++||.+.++ ++||+|| |.|.|...+ .....+.++|+|+++. ++. |... -|
T Consensus 18 ~g~sDPYV~v~l~-----~---~~~kTk~~~~~t~nP~WN-E~F~f~v~~-~~~~~l~v~V~d~~~~~~dd~lG~v~-i~ 86 (150)
T cd04019 18 NRVPEVFVKAQLG-----N---QVLRTRPSQTRNGNPSWN-EELMFVAAE-PFEDHLILSVEDRVGPNKDEPLGRAV-IP 86 (150)
T ss_pred CCCCCeEEEEEEC-----C---EEeeeEeccCCCCCCccc-CcEEEEecC-ccCCeEEEEEEEecCCCCCCeEEEEE-EE
Confidence 4569999999992 2 4567777766 6999999 999998322 2235788999998864 333 5432 22
Q ss_pred CccccccCccccCCCCCcccceeecCC
Q 008661 264 GSEVAQTWEPRKGKNRRLDTLVRRVPN 290 (558)
Q Consensus 264 gt~~~~hW~~~l~~~r~~~~q~~~~~~ 290 (558)
-..+.. ...++.+..+|+.+-+
T Consensus 87 L~~l~~-----~~~~~~~~~~W~~L~~ 108 (150)
T cd04019 87 LNDIER-----RVDDRPVPSRWFSLER 108 (150)
T ss_pred HHHCcc-----cCCCCccCCceEECcC
Confidence 222211 1245667888997763
No 184
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=97.99 E-value=3.4e-05 Score=67.78 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCcccc-ceE---E--e
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQET-GIW---V--H 261 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~~e~-Gv~---v--~ 261 (558)
+.+|||+++.+.. .+++||.++++ +||+|| |.|.|. +..++....+.+.+||.++.... |+. + .
T Consensus 16 ~~~dpyv~v~~~~-------~~~~kT~~~~~-~~P~Wn-e~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~ 86 (117)
T cd08383 16 GTRDPYCTVSLDQ-------VEVARTKTVEK-LNPFWG-EEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKL 86 (117)
T ss_pred CCCCceEEEEECC-------EEeEecceEEC-CCCccc-ceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCc
Confidence 4589999999932 23468888888 999999 999999 65566667888888887754332 332 1 1
Q ss_pred cCCccccccCccccCC
Q 008661 262 QPGSEVAQTWEPRKGK 277 (558)
Q Consensus 262 ~pgt~~~~hW~~~l~~ 277 (558)
.. .+...+|-++..+
T Consensus 87 ~~-~~~~~~w~~L~~~ 101 (117)
T cd08383 87 DL-GQGKDEWFPLTPV 101 (117)
T ss_pred CC-CCcceeEEECccC
Confidence 11 2234677776544
No 185
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=97.98 E-value=1.8e-05 Score=71.36 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=44.9
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+|||+++++.. .++||.++++++||+|| |.|.|. ...+....+.++|||.+..
T Consensus 16 ~~Dpyv~v~l~~--------~~~kT~v~~~t~nP~Wn-e~F~f~-~~~~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 16 SNDPVVEVKLGN--------YKGSTKAIERTSNPEWN-QVFAFS-KDRLQGSTLEVSVWDKDKA 69 (121)
T ss_pred cCCCEEEEEECC--------ccccccccCCCCCCccc-eEEEEE-cCCCcCCEEEEEEEeCCCC
Confidence 589999999931 36799999999999999 999998 3445677899999999854
No 186
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.97 E-value=2.8e-05 Score=70.82 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=46.9
Q ss_pred eEEEEEEEEEeccCC--CCCCCCcceEEecccCCCCceeeEEEeEecCC-CCCCccCCCceeecCCCCCCCCceEEEEEe
Q 008661 173 GRLHLAITVLEESAK--QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPIN 249 (558)
Q Consensus 173 GeL~LsL~y~p~~~~--l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~-TlNPvwN~E~F~Fep~e~l~~v~leveV~D 249 (558)
|.|++.+.--..... ++.+|||+++.+.. .+.||.+.++ ++||+|| |.|.|..... ...+.|+|||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~--------~~~kT~v~~~~~~nP~WN-e~F~f~v~~~--~~~l~~~V~d 70 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGH--------AVYETPTAYNGAKNPRWN-KTIQCTLPEG--VDSIYIEIFD 70 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECC--------EEEEeEEccCCCCCCccC-eEEEEEecCC--CcEEEEEEEe
Confidence 555555543322211 45589999999922 3458888765 7999999 9999983222 2468999999
Q ss_pred cc
Q 008661 250 IE 251 (558)
Q Consensus 250 ~d 251 (558)
.|
T Consensus 71 ~d 72 (121)
T cd04016 71 ER 72 (121)
T ss_pred CC
Confidence 88
No 187
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.96 E-value=1.2e-05 Score=72.59 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=45.6
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C-CCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S-SEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p-~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++.. .++||.++++++||+|| |.|.|. . ...+....+.++|||.+..
T Consensus 18 ~g~~dpyv~v~~~~--------~~~rT~v~~~t~nP~Wn-e~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 18 QGSSSAYVELDFDG--------QKKRTRTKPKDLNPVWN-EKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CCCcCcEEEEEECC--------EEecceeEcCCCCCccc-eEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 34589999999832 35789999999999999 999999 3 3345567899999998754
No 188
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=97.96 E-value=1.2e-05 Score=71.51 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=44.8
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+||||++++... ...++||.++++++||+|| |.|.|..... ....+.|+|||++..
T Consensus 18 ~~~~Dpyv~v~~~~~-----~~~~~kT~vv~~t~nP~Wn-e~f~f~i~~~-~~~~l~v~v~d~d~~ 76 (119)
T cd04036 18 LSTPDCYVELWLPTA-----SDEKKRTKTIKNSINPVWN-ETFEFRIQSQ-VKNVLELTVMDEDYV 76 (119)
T ss_pred CCCCCcEEEEEEcCC-----CCccCccceecCCCCCccc-eEEEEEeCcc-cCCEEEEEEEECCCC
Confidence 355899999998321 1346799999999999999 9999982222 334689999998865
No 189
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=97.95 E-value=1.6e-05 Score=71.66 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCcc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ 254 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~ 254 (558)
.+.+|||+++++. ...+++||+++++|+||+|| |.|.|.... ....+.|+|||++...
T Consensus 15 ~g~~dpyv~v~~~------~~~~~~kT~v~~~t~nP~Wn-e~f~f~~~~--~~~~l~~~v~d~~~~~ 72 (126)
T cd08678 15 AGSSNPYCVLEMD------EPPQKYQSSTQKNTSNPFWD-EHFLFELSP--NSKELLFEVYDNGKKS 72 (126)
T ss_pred CCCcCCEEEEEEC------CCCcEEEeEEEecCCCCccC-ceEEEEeCC--CCCEEEEEEEECCCCC
Confidence 3468999999993 12346899999999999999 999998322 2457899999998653
No 190
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.94 E-value=6.5e-05 Score=68.20 Aligned_cols=76 Identities=8% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC--cccc-ceE-Ee---
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--- 261 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG--~~e~-Gv~-v~--- 261 (558)
+..|||+++.+.. + +..||.++++|+||.|| |.|.|... ....+.|+|||.+. ..+. |.+ +.
T Consensus 33 g~~dpyv~v~~~~-----~--~~~kT~~~~~t~~P~Wn-e~f~~~v~---~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 33 QLLDPYVSIDVDD-----T--HIGKTSTKPKTNSPVWN-EEFTTEVH---NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred cCcCcEEEEEECC-----E--EEeEEeEcCCCCCCCcc-eeEEEEcC---CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 3589999999932 2 33688899999999999 99999832 34678899998763 3333 544 21
Q ss_pred -cC-CccccccCcccc
Q 008661 262 -QP-GSEVAQTWEPRK 275 (558)
Q Consensus 262 -~p-gt~~~~hW~~~l 275 (558)
.. +.+....|-+..
T Consensus 102 l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 102 LIQRGSGSFDLWVDLE 117 (132)
T ss_pred hcccCCCcccEEEEcc
Confidence 12 133346787664
No 191
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.93 E-value=2.8e-05 Score=74.60 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=51.4
Q ss_pred eEEEEEEEEEeccCC--C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEe
Q 008661 173 GRLHLAITVLEESAK--Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPIN 249 (558)
Q Consensus 173 GeL~LsL~y~p~~~~--l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D 249 (558)
|-|.+.+..-..-.. . +-+||||.+.+.. ++.||.+.++++||+|| |.|+|...+. ...+.++|||
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--------q~lkT~~v~~n~NPeWN-e~ltf~v~d~--~~~lkv~VyD 74 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--------QKLKTRVVYKNLNPEWN-EELTFTVKDP--NTPLKVTVYD 74 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEECC--------eeeeeeeecCCCCCccc-ceEEEEecCC--CceEEEEEEe
Confidence 555555543322211 2 4499999999922 35778899999999999 9999984443 4678899999
Q ss_pred ccCcccc
Q 008661 250 IEGQQET 256 (558)
Q Consensus 250 ~dG~~e~ 256 (558)
+|.-...
T Consensus 75 ~D~fs~d 81 (168)
T KOG1030|consen 75 KDTFSSD 81 (168)
T ss_pred CCCCCcc
Confidence 9954443
No 192
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=97.91 E-value=3.2e-05 Score=68.42 Aligned_cols=56 Identities=9% Similarity=-0.028 Sum_probs=41.7
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEec-CCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~Vk-K~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++.+.. .++||+++ +.++||+|| |.|.|..... ....+.++|||++..
T Consensus 19 ~~~~dpyv~v~~~~--------~~~kT~~~~~~~~nP~Wn-e~f~f~v~~~-~~~~l~i~v~d~~~~ 75 (118)
T cd08681 19 LDKQDPYCVLRIGG--------VTKKTKTDFRGGQHPEWD-EELRFEITED-KKPILKVAVFDDDKR 75 (118)
T ss_pred CCCCCceEEEEECC--------CccccccccCCCCCCccC-ceEEEEecCC-CCCEEEEEEEeCCCC
Confidence 44589999999932 34677776 458999999 9999992222 346789999998854
No 193
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.91 E-value=2.3e-05 Score=70.60 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=45.6
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++.. .++||.++++++||+|| |.|.|. .........+.++|||++..
T Consensus 12 ~g~~Dpyv~v~~~~--------~~~kT~v~~~~~nP~Wn-e~f~f~~~~~~~~~~~l~~~v~d~~~~ 69 (127)
T cd08373 12 KGKGDRIAKVTFRG--------VKKKTRVLENELNPVWN-ETFEWPLAGSPDPDESLEIVVKDYEKV 69 (127)
T ss_pred CCCCCCEEEEEECC--------EeeecceeCCCcCCccc-ceEEEEeCCCcCCCCEEEEEEEECCCC
Confidence 44589999999921 35799999999999999 999998 32225678899999999854
No 194
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=97.90 E-value=4.4e-05 Score=71.60 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=43.2
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
+.+|||+++.+. .+++||.++++++||+|| |.|.|...+. ...+.++|||++.
T Consensus 20 ~~sDPYV~v~~g--------~~~~kT~vvk~t~nP~Wn-E~f~f~i~~~--~~~l~~~V~D~d~ 72 (145)
T cd04038 20 TSSDPYVVLTLG--------NQKVKTRVIKKNLNPVWN-EELTLSVPNP--MAPLKLEVFDKDT 72 (145)
T ss_pred CCcCcEEEEEEC--------CEEEEeeeEcCCCCCeec-ccEEEEecCC--CCEEEEEEEECCC
Confidence 458999999992 146899999999999999 8999993222 6678999999983
No 195
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.89 E-value=2.4e-05 Score=69.00 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=44.3
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++.. .++||.++++|+||+|| |.|.|...+ .....+.++|||++..
T Consensus 18 ~~~~dPyv~v~~~~--------~~~kT~v~~~t~nP~Wn-e~f~f~~~~-~~~~~l~v~v~d~~~~ 73 (116)
T cd08376 18 NGLSDPYVKFRLGN--------EKYKSKVCSKTLNPQWL-EQFDLHLFD-DQSQILEIEVWDKDTG 73 (116)
T ss_pred CCCCCcEEEEEECC--------EeEecccccCCCCCcee-EEEEEEecC-CCCCEEEEEEEECCCC
Confidence 35589999999921 45789999999999999 899998322 2456889999998853
No 196
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=97.88 E-value=0.00011 Score=66.50 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=43.6
Q ss_pred EEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661 175 LHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 175 L~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG 252 (558)
|.+.+.--..-...+.+|||+++.+.. .+++||.++ +++||+|| |.|.|. ....+ ..+.+.|||++.
T Consensus 6 L~V~Vi~A~~L~~~~~~DPYv~v~l~~-------~~~~kT~v~-~~~nP~Wn-E~f~f~~~~~~~--~~l~v~v~d~~~ 73 (126)
T cd08400 6 LQLNVLEAHKLPVKHVPHPYCVISLNE-------VKVARTKVR-EGPNPVWS-EEFVFDDLPPDV--NSFTISLSNKAK 73 (126)
T ss_pred EEEEEEEeeCCCCCCCCCeeEEEEECC-------EeEEEeecC-CCCCCccC-CEEEEecCCCCc--CEEEEEEEECCC
Confidence 444443332222344589999999922 234678874 68999999 999997 32222 356788898873
No 197
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=97.86 E-value=4.3e-05 Score=68.83 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=44.1
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||++++++. ..++||.++++++||+|| |.|.|.... ...+.++|||++..
T Consensus 18 ~~~~dpyv~v~~~~-------~~~~kT~v~~~t~nP~Wn-e~f~~~~~~---~~~l~i~V~d~~~~ 72 (123)
T cd08382 18 FRLPDPFAVITVDG-------GQTHSTDVAKKTLDPKWN-EHFDLTVGP---SSIITIQVFDQKKF 72 (123)
T ss_pred CCCCCcEEEEEECC-------ccceEccEEcCCCCCccc-ceEEEEeCC---CCEEEEEEEECCCC
Confidence 34589999999932 345799999999999999 999999322 56899999998743
No 198
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=97.85 E-value=6e-05 Score=66.54 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.7
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
+.+|||+++.+. + +++||.++++++||+|| |.|.|.. .......+.++|||++..
T Consensus 26 g~~dPyv~v~~~-----~---~~~kT~~~~~t~~P~W~-e~f~~~v-~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 26 GKSDPYVIVRVG-----A---QTFKSKVIKENLNPKWN-EVYEAVV-DEVPGQELEIELFDEDPD 80 (121)
T ss_pred CCcCCEEEEEEC-----C---EeEEccccCCCCCCccc-ceEEEEe-CCCCCCEEEEEEEecCCC
Confidence 458999999992 1 56899999999999999 8899882 222456889999998754
No 199
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=97.84 E-value=6.6e-05 Score=67.04 Aligned_cols=56 Identities=9% Similarity=-0.108 Sum_probs=44.4
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++.+.. .++||.++++++||+|| |.|.|...+ .....+.++|||++..
T Consensus 21 ~~~~dPyv~v~~~~--------~~~kT~~~~~t~~P~Wn-e~f~~~~~~-~~~~~l~i~v~d~~~~ 76 (128)
T cd04024 21 KGKSDPYAILSVGA--------QRFKTQTIPNTLNPKWN-YWCEFPIFS-AQNQLLKLILWDKDRF 76 (128)
T ss_pred CCCcCCeEEEEECC--------EEEecceecCCcCCccC-CcEEEEecC-CCCCEEEEEEEECCCC
Confidence 45689999999821 35799999999999999 899998322 4456899999998854
No 200
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=97.83 E-value=4.5e-05 Score=68.12 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=43.9
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++.+. + ...+||.++++++||+|| |.|.|... .+ ...+.++|||++..
T Consensus 18 ~g~~Dpyv~v~~~-----~--~~~~kT~~~~~t~nP~Wn-e~f~f~v~-~~-~~~l~~~v~D~d~~ 73 (121)
T cd04042 18 GGTSDPYVKFKYG-----G--KTVYKSKTIYKNLNPVWD-EKFTLPIE-DV-TQPLYIKVFDYDRG 73 (121)
T ss_pred CCCCCCeEEEEEC-----C--EEEEEeeeccCCCCCccc-eeEEEEec-CC-CCeEEEEEEeCCCC
Confidence 3568999999983 2 245789999999999999 99999832 22 35799999999854
No 201
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=97.79 E-value=0.00011 Score=66.06 Aligned_cols=55 Identities=9% Similarity=-0.028 Sum_probs=42.2
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
.+.+|||+++.+. ++ ...||.++++++||+|| |.|.|..... ...+.|+|||++.
T Consensus 18 ~g~~DPYv~v~~~-----~~--~~~kT~v~~~t~nP~Wn-e~f~~~~~~~--~~~l~v~v~d~~~ 72 (121)
T cd04054 18 TGSSDPYCIVKVD-----NE--VIIRTATVWKTLNPFWG-EEYTVHLPPG--FHTVSFYVLDEDT 72 (121)
T ss_pred CCCCCceEEEEEC-----CE--eeeeeeeEcCCCCCccc-ceEEEeeCCC--CCEEEEEEEECCC
Confidence 4458999999982 22 34689999999999999 9999983222 2578899999874
No 202
>PLN02964 phosphatidylserine decarboxylase
Probab=97.79 E-value=2e-05 Score=89.51 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=76.2
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcE-EEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661 62 KEPVAYARVEVVEASDMKPSDLNGLADPY-VKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 140 (558)
Q Consensus 62 d~~~G~L~VtVieArdL~~~D~~G~sDPY-VkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~ 140 (558)
+.=.|.+.++|++|+ |+ ..||| +.+.+|.+.++|.+.++|+||+||+...|.+.+.+ ....+|.|||.+++
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG-PHLARISVFETNRL 121 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC-cceEEEEEEecCCC
Confidence 444689999999996 33 35886 55677889999999999999999999999998643 44579999999999
Q ss_pred C-CCccEEEEEecccccCCCce
Q 008661 141 V-DDTLGDCTINISDLRDGQRH 161 (558)
Q Consensus 141 s-DDfIGev~IpL~eL~~~~~~ 161 (558)
+ ++++|.|.++|.++...+..
T Consensus 122 s~n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred CHHHhhhheeecHhhccHHHHH
Confidence 9 99999999999888765543
No 203
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=97.77 E-value=6.5e-05 Score=67.17 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=42.6
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
+.+|||+++++.. .++||.++++++||+|| |.|.|.... .....+.|+|||++.
T Consensus 19 ~~~DPyv~v~~~~--------~~~kT~v~~~t~nP~Wn-e~f~f~~~~-~~~~~l~~~v~d~~~ 72 (123)
T cd04025 19 GTSDPFVRVFYNG--------QTLETSVVKKSCYPRWN-EVFEFELME-GADSPLSVEVWDWDL 72 (123)
T ss_pred CCcCceEEEEECC--------EEEeceeecCCCCCccC-cEEEEEcCC-CCCCEEEEEEEECCC
Confidence 4589999999821 34789999999999999 999998222 225678999999874
No 204
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.76 E-value=2.5e-05 Score=67.97 Aligned_cols=95 Identities=20% Similarity=0.420 Sum_probs=71.2
Q ss_pred EEEEEEecCCCCCCC-CCCCCcEEEEEe---CCeEEEeeeecCCCCCccceEEEEeeccCCC-CceEEEEEeecCCCC-C
Q 008661 69 RVEVVEASDMKPSDL-NGLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFV-D 142 (558)
Q Consensus 69 ~VtVieArdL~~~D~-~G~sDPYVkV~L---gp~k~KTkVikkTlNPvWnEtF~F~V~~~e~-~~tL~V~V~D~D~~s-D 142 (558)
-|+|+.|++|.-... ...+--|++--+ .+-.+||.+.+...||+|+|+|.|.+..++. .-+|.|.|+. ... .
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 478999999964332 233455776655 2367899999999999999999999986553 3489999998 444 8
Q ss_pred CccEEEEEecccccCCCceeeeee
Q 008661 143 DTLGDCTINISDLRDGQRHDMWIP 166 (558)
Q Consensus 143 DfIGev~IpL~eL~~~~~~e~W~~ 166 (558)
..||.|.+.|..+... ...+|.+
T Consensus 80 e~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHH-Hhhhhhc
Confidence 8999999999987543 4566765
No 205
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.75 E-value=5.7e-05 Score=66.81 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=44.1
Q ss_pred CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 187 KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 187 ~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
..+.+|||+++++.. + ..+||.++++++||+|| |.|.|.. .......++|+|+|.+..
T Consensus 9 ~~G~~dPYv~v~v~~-----~--~~~kT~v~~~t~nP~Wn-e~f~f~v-~~~~~~~l~i~v~d~~~~ 66 (111)
T cd04052 9 KTGLLSPYAELYLNG-----K--LVYTTRVKKKTNNPSWN-ASTEFLV-TDRRKSRVTVVVKDDRDR 66 (111)
T ss_pred cCCCCCceEEEEECC-----E--EEEEEeeeccCCCCccC-CceEEEe-cCcCCCEEEEEEEECCCC
Confidence 356689999999922 1 34688888999999999 9999982 233456688999998754
No 206
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.75 E-value=7.7e-05 Score=66.77 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=44.6
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++.. ...+++||.++++++||+|| |.|.|..... ....+.|+|||++..
T Consensus 19 ~~~~Dpyv~v~~~~-----~~~~~~kT~~~~~t~~P~Wn-e~f~f~i~~~-~~~~L~i~v~d~d~~ 77 (126)
T cd04043 19 NGLSDPYVTLVDTN-----GKRRIAKTRTIYDTLNPRWD-EEFELEVPAG-EPLWISATVWDRSFV 77 (126)
T ss_pred CCCCCceEEEEECC-----CCeeeecccEecCCCCCccc-ceEEEEcCCC-CCCEEEEEEEECCCC
Confidence 34589999998732 22345799999999999999 9999993332 356788999998743
No 207
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.75 E-value=7.3e-05 Score=67.53 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++.... .+....++||.++++|+||+|| |.|.|..... ...+.++|||++..
T Consensus 18 ~~~~Dpyv~v~~~~~~-~~~~~~~~kT~v~~~t~nP~Wn-e~f~f~~~~~--~~~l~~~v~d~~~~ 79 (133)
T cd04033 18 FGASDPYVKISLYDPD-GNGEIDSVQTKTIKKTLNPKWN-EEFFFRVNPR--EHRLLFEVFDENRL 79 (133)
T ss_pred CCCcCcEEEEEEECCC-CCCcccceeeeEEcCCCCCcEe-eEEEEEEcCC--CCEEEEEEEECCCC
Confidence 4568999999995321 2234456799999999999999 9999982221 34688999998843
No 208
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=97.73 E-value=0.00015 Score=65.62 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=41.8
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
.+.+|||+++++.. .++||.++++++||.|| |.|.|..... ...+.++|||+|.
T Consensus 19 ~g~~DPyv~v~~~~--------~~~kT~~v~~t~~P~Wn-e~f~f~~~~~--~~~l~i~v~d~d~ 72 (127)
T cd04027 19 TGTSDPYVTVQVGK--------TKKRTKTIPQNLNPVWN-EKFHFECHNS--SDRIKVRVWDEDD 72 (127)
T ss_pred CCCcCcEEEEEECC--------EeeecceecCCCCCccc-eEEEEEecCC--CCEEEEEEEECCC
Confidence 45589999999821 35789999999999999 9999972222 3468999999873
No 209
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=97.70 E-value=0.00012 Score=69.30 Aligned_cols=62 Identities=8% Similarity=0.057 Sum_probs=45.2
Q ss_pred CCCCCCcceEEecccCCCCc---------------------eeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEE
Q 008661 188 QGVDSPCDGGTLNKEGMGNK---------------------EDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFE 246 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~k---------------------rlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leve 246 (558)
.+.+|||+++.+........ ....+||.++++++||+|| |.|.|.. ..+....+.|+
T Consensus 46 ~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn-E~F~f~v-~~~~~~~L~i~ 123 (153)
T cd08676 46 NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN-ETFRFEV-EDVSNDQLHLD 123 (153)
T ss_pred CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc-cEEEEEe-ccCCCCEEEEE
Confidence 45699999999943211100 0134789999999999999 9999983 33345789999
Q ss_pred EEecc
Q 008661 247 PINIE 251 (558)
Q Consensus 247 V~D~d 251 (558)
|||++
T Consensus 124 V~D~d 128 (153)
T cd08676 124 IWDHD 128 (153)
T ss_pred EEecC
Confidence 99987
No 210
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=97.70 E-value=0.00013 Score=66.00 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=43.3
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++.+.. ++.||.++++++||+|| |.|.|.... ....+.|+|||++..
T Consensus 21 ~g~~dPyv~v~~~~--------~~~kT~v~~~t~nP~Wn-e~f~f~~~~--~~~~l~i~V~d~~~~ 75 (126)
T cd04046 21 GGGADPYVIIKCEG--------ESVRSPVQKDTLSPEFD-TQAIFYRKK--PRSPIKIQVWNSNLL 75 (126)
T ss_pred CCCcCccEEEEECC--------EEEEeCccCCCCCCccc-ceEEEEecC--CCCEEEEEEEECCCC
Confidence 34589999998822 25799999999999999 899997322 256899999998743
No 211
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.68 E-value=2.8e-05 Score=72.20 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=49.2
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCC--CccCCCceeec-CC---------------------CCCCCCceEE
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFAN--ETTDKGSFSSV-SS---------------------EKSPKVADNF 245 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlN--PvwN~E~F~Fe-p~---------------------e~l~~v~lev 245 (558)
++|||||++|.+. ...++||.|+.+++| |+|| +.|.|. +. +.+....+.+
T Consensus 24 ~sD~yVK~~L~~~-----~~~kqkTDVHyrslnG~~~FN-wRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~l 97 (133)
T cd08374 24 MSDIYVKGWLDGL-----EEDKQKTDVHYRSLDGEGNFN-WRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTL 97 (133)
T ss_pred ccCeEEEEEEccC-----cccccccceEEecCCCCcEEe-EEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEE
Confidence 4899999999543 577899999999999 9999 999988 44 6678899999
Q ss_pred EEEeccC
Q 008661 246 EPINIEG 252 (558)
Q Consensus 246 eV~D~dG 252 (558)
+|||+|.
T Consensus 98 qvwD~D~ 104 (133)
T cd08374 98 QVWDNDK 104 (133)
T ss_pred EEEECcc
Confidence 9999984
No 212
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.67 E-value=0.00018 Score=64.82 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=42.8
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+.+|||+++++. + ..++||.++++++||.|| |.|.|..... ...+.|+|||++..
T Consensus 19 ~g~~DPYv~v~~~-----~--~~~~kT~~~~~t~~P~Wn-e~f~~~v~~~--~~~L~v~v~d~~~~ 74 (120)
T cd04045 19 VGKIDPYVRVLVN-----G--IVKGRTVTISNTLNPVWD-EVLYVPVTSP--NQKITLEVMDYEKV 74 (120)
T ss_pred CCCcCCEEEEEEC-----C--EEeeceeEECCCcCCccC-ceEEEEecCC--CCEEEEEEEECCCC
Confidence 3458999999992 1 256889999999999999 8888872222 24789999998743
No 213
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.67 E-value=0.00015 Score=64.34 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=44.0
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+|||+++.+... .+++||.++++++||+|| |.|.|... .....+.++|||++..
T Consensus 23 ~~dpyv~v~~~~~------~~~~kT~~~~~~~~P~Wn-e~~~~~v~--~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 23 TVDPYVTFSISNR------RELARTKVKKDTSNPVWN-ETKYILVN--SLTEPLNLTVYDFNDK 77 (124)
T ss_pred CCCCeEEEEECCC------CcceEeeeecCCCCCcce-EEEEEEeC--CCCCEEEEEEEecCCC
Confidence 4799999999431 356899999999999999 99999832 3356789999998754
No 214
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=97.65 E-value=0.00019 Score=63.43 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=41.7
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
+.+|||+++++.. .+.||.++++++||.|| |.|.|...+ + ...+.++|||++.
T Consensus 20 ~~~dPyv~v~~~~--------~~~~T~~~~~t~nP~W~-e~f~~~~~~-~-~~~l~~~v~d~~~ 72 (119)
T cd08377 20 GKSDPFCVLELVN--------ARLQTHTIYKTLNPEWN-KIFTFPIKD-I-HDVLEVTVYDEDK 72 (119)
T ss_pred CCCCcEEEEEECC--------EeeecceecCCcCCccC-cEEEEEecC-c-CCEEEEEEEECCC
Confidence 4489999999932 23689999999999999 899998322 2 3578899999874
No 215
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.60 E-value=0.00041 Score=64.10 Aligned_cols=68 Identities=6% Similarity=-0.119 Sum_probs=47.6
Q ss_pred eEEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 173 GRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 173 GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
|.|++++.--......+..+|||.+.+. . .|.||.+.++ .||.|| |.|.|...+ . ...+.++|||.+-
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g------~--~k~kT~v~~~-~nP~Wn-E~F~F~~~~-~-~~~L~v~V~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQ------N--VKSTTIAVRG-SQPCWE-QDFMFEINR-L-DLGLVIELWNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEEC------C--EEeEeeECCC-CCCcee-eEEEEEEcC-C-CCEEEEEEEeCCC
Confidence 4566666544443334446899999991 1 4578888887 499999 999998433 2 2339999999873
No 216
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=97.59 E-value=0.00028 Score=63.19 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=40.8
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeec-CCCC-CCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSV-SSEK-SPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fe-p~e~-l~~v~leveV~D~dG 252 (558)
+..|||+++.+.. .+++|.+.+ +++||.|| |.|.|. ...+ .....+.|+|||.+.
T Consensus 20 ~~~dpyv~v~~~~--------~~~~T~~~~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 20 GKIDPYVIIQCRT--------QERKSKVAKGDGRNPEWN-EKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CCcCceEEEEECC--------EeeeeeEcCCCCCCCccc-ceEEEEecCcccCCCCEEEEEEEECcc
Confidence 4589999999821 246777777 48999999 999998 3222 234678899999874
No 217
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=97.46 E-value=0.00046 Score=62.46 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=43.3
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+..|||+++++. +. .++||.++++++||+|| |.|.|... ....+.|+|||++..
T Consensus 19 ~~~~dPyv~v~~~-----~~--~~~kT~v~~~t~~P~Wn-e~f~~~~~---~~~~l~~~V~d~~~~ 73 (125)
T cd04021 19 SFKPDPYVEVTVD-----GQ--PPKKTEVSKKTSNPKWN-EHFTVLVT---PQSTLEFKVWSHHTL 73 (125)
T ss_pred CCCCCeEEEEEEC-----Cc--ccEEeeeeCCCCCCccc-cEEEEEeC---CCCEEEEEEEeCCCC
Confidence 4458999999993 22 46899999999999999 89999822 235789999998754
No 218
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.43 E-value=0.00038 Score=61.21 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=44.0
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+..|||+++.+.. .+.++|.++.+++||+|| |.|.|...+. ....+.+++||++..
T Consensus 17 ~~~~dpyv~v~~~~-------~~~~~T~v~~~~~~P~Wn-e~f~~~~~~~-~~~~l~~~v~d~~~~ 73 (115)
T cd04040 17 NGKSDPFVKFYLNG-------EKVFKTKTIKKTLNPVWN-ESFEVPVPSR-VRAVLKVEVYDWDRG 73 (115)
T ss_pred CCCCCCeEEEEECC-------CcceeeceecCCCCCccc-ccEEEEeccC-CCCEEEEEEEeCCCC
Confidence 34589999999932 244789999999999999 9999983222 456788999998743
No 219
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.36 E-value=0.0002 Score=66.35 Aligned_cols=100 Identities=22% Similarity=0.355 Sum_probs=74.7
Q ss_pred EEEEEEEecCCCCCC-----------C--CCCCCcEEEEEe--CC--eEEEeeeecCCCCCccceEEEEeeccC------
Q 008661 68 ARVEVVEASDMKPSD-----------L--NGLADPYVKGQL--GP--YRFRTKTQRKTLSPKWHEEFNIPISTW------ 124 (558)
Q Consensus 68 L~VtVieArdL~~~D-----------~--~G~sDPYVkV~L--gp--~k~KTkVikkTlNPvWnEtF~F~V~~~------ 124 (558)
|.|.|++|.+|+... . .-.-++||++.+ .+ ...+|+++-++..|.|+..|+|.++-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468899999997532 0 112589999996 33 678999999999999999999987610
Q ss_pred C--------CCceEEEEEeecCCC-----------CCCccEEEEEecccccCC-Cceeeeeec
Q 008661 125 D--------SPNVLVIEVRDKDHF-----------VDDTLGDCTINISDLRDG-QRHDMWIPL 167 (558)
Q Consensus 125 e--------~~~tL~V~V~D~D~~-----------sDDfIGev~IpL~eL~~~-~~~e~W~~L 167 (558)
+ ....+.|+||+...- +|-+||.+.||+.+|... .....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 0 134689999997542 145899999999998654 457889975
No 220
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.32 E-value=0.00032 Score=88.05 Aligned_cols=72 Identities=10% Similarity=0.008 Sum_probs=52.6
Q ss_pred ceEEEEEEEEEecc-CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661 172 IGRLHLAITVLEES-AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI 250 (558)
Q Consensus 172 ~GeL~LsL~y~p~~-~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~ 250 (558)
.|.|.+++.--..- +.++.+|||+++.+.. -.++||.+++++.||+|| |.|.|...+......+.++|||+
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~-------~~~~kTkvvk~~~nP~Wn-e~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGN-------GPPRQTKVVSHSSSPEWK-EGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEECC-------CCcccccccCCCCCCCcc-cceeeeecCCCCCCceEEEEEec
Confidence 47877776633222 3356689999999932 245799999999999999 88886622333445699999998
Q ss_pred c
Q 008661 251 E 251 (558)
Q Consensus 251 d 251 (558)
|
T Consensus 2051 d 2051 (2102)
T PLN03200 2051 N 2051 (2102)
T ss_pred C
Confidence 7
No 221
>PLN03008 Phospholipase D delta
Probab=97.27 E-value=0.00048 Score=80.01 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=61.8
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCcccc--ceE-E----e
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET--GIW-V----H 261 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~--Gv~-v----~ 261 (558)
..+||||++.|.. .++.||.|+++++||+|| |.|.|.... ....+.|+|+|+|.-... |.. + .
T Consensus 75 ~tSDPYV~I~Lg~-------~rv~RTrVi~n~~NPvWN-E~F~f~vah--~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L 144 (868)
T PLN03008 75 ITSDPYVTVVVPQ-------ATLARTRVLKNSQEPLWD-EKFNISIAH--PFAYLEFQVKDDDVFGAQIIGTAKIPVRDI 144 (868)
T ss_pred CCCCceEEEEECC-------cceeeEEeCCCCCCCCcc-eeEEEEecC--CCceEEEEEEcCCccCCceeEEEEEEHHHc
Confidence 4489999999922 234589999999999999 999998222 245899999998844333 533 1 2
Q ss_pred cCCccccccCccccCCCCCcc---cceeec
Q 008661 262 QPGSEVAQTWEPRKGKNRRLD---TLVRRV 288 (558)
Q Consensus 262 ~pgt~~~~hW~~~l~~~r~~~---~q~~~~ 288 (558)
.+|.. ...|.+.+...++|. +++|..
T Consensus 145 ~~Ge~-vd~Wl~Ll~~~~kp~k~~~kl~v~ 173 (868)
T PLN03008 145 ASGER-ISGWFPVLGASGKPPKAETAIFID 173 (868)
T ss_pred CCCCc-eEEEEEccccCCCCCCCCcEEEEE
Confidence 34433 368998877655544 677654
No 222
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=97.10 E-value=0.0011 Score=59.11 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=44.8
Q ss_pred CCCCCCcceEEecccCCCCc-eeeEEEeEecCCCC-CCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNK-EDQSNKEDIRESFA-NETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~k-rlkKKKT~VkK~Tl-NPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.+..|||+++++... .. ...++||.+.+++. ||.|| |.|.|... ......+.++|||.+..
T Consensus 22 ~~~~dpyv~v~l~~~---~~~~~~~~kT~~~~~~~~~P~w~-e~f~f~~~-~~~~~~l~~~V~d~~~~ 84 (128)
T cd00275 22 GSIVDPYVEVEIHGL---PADDSAKFKTKVVKNNGFNPVWN-ETFEFDVT-VPELAFLRFVVYDEDSG 84 (128)
T ss_pred CCccCCEEEEEEEeC---CCCCCCcEeeeeecCCCcCCccC-CcEEEEEe-CCCeEEEEEEEEeCCCC
Confidence 345899999999443 22 45678999887775 99999 99999922 22234688999998864
No 223
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.09 E-value=0.00038 Score=82.07 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=66.5
Q ss_pred ceEEEEEEEEEeccCC------CCC--------CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CC
Q 008661 172 IGRLHLAITVLEESAK------QGV--------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SS 235 (558)
Q Consensus 172 ~GeL~LsL~y~p~~~~------l~l--------sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~ 235 (558)
.|+|.|+|.|....-. .++ +|||||.||.+ ..++..|+||.|..+|.||+|| |...+. |.
T Consensus 1512 ggqV~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlP---dp~k~sKRKTKvvrkt~~PTfn-E~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1512 GGQVKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLP---DPRKTSKRKTKVVRKTRNPTFN-EMLVYDGFPK 1587 (1639)
T ss_pred CceEEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEecC---CchHhhhhhhccccccCCCchh-hheeecCCch
Confidence 5799999999743311 111 78999999954 4777888999999999999999 888877 88
Q ss_pred CCCCCCceEEEEEeccCcccc
Q 008661 236 EKSPKVADNFEPINIEGQQET 256 (558)
Q Consensus 236 e~l~~v~leveV~D~dG~~e~ 256 (558)
+.++...++++||..+|..+.
T Consensus 1588 ~~l~qReLQ~sVls~~~~~en 1608 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLEN 1608 (1639)
T ss_pred hhhhhheeeeeeecccceeee
Confidence 999999999999998887665
No 224
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=97.05 E-value=0.0017 Score=58.03 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=42.8
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeec-CCCC--CCCCceEEEEEeccC
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSV-SSEK--SPKVADNFEPINIEG 252 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fe-p~e~--l~~v~leveV~D~dG 252 (558)
.+..|||+++++.. ..++||.+.+ .+.||+|| |.|.|. +... .....+.|+|||++.
T Consensus 18 ~~~~dpYv~v~~~~-------~~~~~T~~~~~~~~~P~Wn-e~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 18 FGKMKVYAVVWIDP-------SHKQSTPVDRDGGTNPTWN-ETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred ccCCceEEEEEECC-------CcccccccccCCCCCCCCC-CEEEEEcChHhcccCccEEEEEEEECCC
Confidence 34489999999933 2457888865 58999999 999999 3332 246789999999873
No 225
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=97.01 E-value=0.001 Score=53.91 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~ 253 (558)
.+..+||+++.+... .. .+++|.+++.+.||.|| +.|.|. ....... +.|+|||++..
T Consensus 17 ~~~~~~yv~v~~~~~---~~--~~~~T~~~~~~~~P~w~-e~~~~~~~~~~~~~--l~~~V~~~~~~ 75 (85)
T PF00168_consen 17 NGKPDPYVRVSVNGS---ES--TKYKTKVKKNTSNPVWN-EEFEFPLDDPDLDS--LSFEVWDKDSF 75 (85)
T ss_dssp TSSBEEEEEEEEETT---TC--EEEEECCBSSBSSEEEE-EEEEEEESHGCGTE--EEEEEEEETSS
T ss_pred CCcccccceeeccee---ee--eeeeeeeeeccccceee-eeeeeeeecccccc--eEEEEEECCCC
Confidence 334789999999443 11 67899999999999999 999998 4444433 99999998743
No 226
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.87 E-value=0.00096 Score=71.71 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=93.6
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCccceEEEEeeccCC----------CC
Q 008661 63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD----------SP 127 (558)
Q Consensus 63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg-----p~k~KTkVikkTlNPvWnEtF~F~V~~~e----------~~ 127 (558)
.....|.+.|+++.+++........|-||++.+. .++.+|.+++.|..|.|+|.|.+.+.... ..
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3456677888999888754323346789988872 26779999999999999999999987522 12
Q ss_pred ceEEEEEeecCCCC--CCccEEEEEecccccCCCceeeeeecCCC---CceEEEEEEEEEe
Q 008661 128 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPLQNI---KIGRLHLAITVLE 183 (558)
Q Consensus 128 ~tL~V~V~D~D~~s--DDfIGev~IpL~eL~~~~~~e~W~~L~~k---~~GeL~LsL~y~p 183 (558)
..+.|++|....|- |.++|.|.+.|..|...-.....++|.+. ..|.|.+.++...
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence 36899999998774 89999999999988776667778888763 4688888887654
No 227
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.67 E-value=0.0047 Score=68.77 Aligned_cols=90 Identities=26% Similarity=0.429 Sum_probs=71.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeC--C----eEEEeeeecCCCCCccceEEEEeecc---CCCCceEEEEEeec
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLG--P----YRFRTKTQRKTLSPKWHEEFNIPIST---WDSPNVLVIEVRDK 137 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lg--p----~k~KTkVikkTlNPvWnEtF~F~V~~---~e~~~tL~V~V~D~ 137 (558)
....-.++|++|..+|..+++|||..++-- . ..++|.+++++++|.|-+ |.+.... .+....+.+.|||+
T Consensus 137 ~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~ 215 (529)
T KOG1327|consen 137 DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDY 215 (529)
T ss_pred ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEecc
Confidence 344445678999999999999999998863 2 467999999999999985 4444332 22456899999999
Q ss_pred CCCC-CCccEEEEEecccccC
Q 008661 138 DHFV-DDTLGDCTINISDLRD 157 (558)
Q Consensus 138 D~~s-DDfIGev~IpL~eL~~ 157 (558)
+..+ +++||.+..++..+..
T Consensus 216 ~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 216 DSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCCCcCceeEecccHHHhcc
Confidence 9988 7999999999998864
No 228
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.55 E-value=0.0086 Score=49.12 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=44.1
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
...+||+++.+... + ...++|.+..++.||.|| +.|.|..... ....+.++|||....
T Consensus 19 ~~~~~yv~v~~~~~---~--~~~~~T~~~~~~~~P~w~-e~~~~~~~~~-~~~~l~i~v~~~~~~ 76 (101)
T smart00239 19 GKSDPYVKVSLDGD---P--KEKKKTKVVKNTLNPVWN-ETFEFEVPPP-ELAELEIEVYDKDRF 76 (101)
T ss_pred CCCCceEEEEEeCC---c--cceEeeeEecCCCCCccc-ceEEEEecCc-ccCEEEEEEEecCCc
Confidence 34789999999433 1 456899999999999999 8999982221 177888999998754
No 229
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=96.31 E-value=0.021 Score=53.94 Aligned_cols=66 Identities=9% Similarity=-0.048 Sum_probs=45.8
Q ss_pred EEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661 176 HLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 251 (558)
Q Consensus 176 ~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d 251 (558)
.|.|+.....+.....++|+.+.|+.. +..||.++.++.||.|| |.|.|. .......+.|.|+..+
T Consensus 12 sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~-------~vaRT~v~~~~~nP~W~-E~F~f~--~~~~~~~l~v~v~k~~ 77 (146)
T cd04013 12 SLKLWIIEAKGLPPKKRYYCELCLDKT-------LYARTTSKLKTDTLFWG-EHFEFS--NLPPVSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEccCCCCcCCceEEEEECCE-------EEEEEEEEcCCCCCcce-eeEEec--CCCcccEEEEEEEEcc
Confidence 455555554443334689999999443 44689999999999999 999997 1112355778887544
No 230
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.20 E-value=0.053 Score=51.94 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=87.1
Q ss_pred cCCceEEEEEEEEecCCCCCCC--CCCCCcEEE--EEeCCeEEEeeeecCCCCCccceEEEEeeccCC------------
Q 008661 62 KEPVAYARVEVVEASDMKPSDL--NGLADPYVK--GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------------ 125 (558)
Q Consensus 62 d~~~G~L~VtVieArdL~~~D~--~G~sDPYVk--V~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e------------ 125 (558)
++....|+|.|+.++-+...-. .+..+.... +.+++++++|+.+..+.+|.|+|.|.|.+....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3456689999999985532111 134444444 445889999999999999999999999988532
Q ss_pred CCceEEEEEeecCCCC-CCccEEEEEecccccCCCce--eeeeecCC------CCceEEEEEEEEEecc
Q 008661 126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN------IKIGRLHLAITVLEES 185 (558)
Q Consensus 126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~--e~W~~L~~------k~~GeL~LsL~y~p~~ 185 (558)
..+.|++.|.--|..+ ..++|.-.+.-..+...+.. ..-+.|.+ ...|-|.|++.++|..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 2346788888777766 57888888888877665544 33334432 2468999999988864
No 231
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.00 E-value=0.0025 Score=55.70 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCcccc-ceE---EecCCc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQET-GIW---VHQPGS 265 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~~e~-Gv~---v~~pgt 265 (558)
+..|+|..+.-. +--..||+++....||+|+ |.|.|. -..+++.+.+.|.|+..-...+. |-+ +...|.
T Consensus 21 ~~i~ikg~~tl~-----kpv~~KsS~rrgs~d~~f~-ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 21 PTIYIKGILTLP-----KPVHFKSSAKEGSNDIEFM-ETFVFAIKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLST 94 (103)
T ss_pred CeeEEEEEEecC-----CCccccchhhcCCCChhHH-HHHHHHHHHhhccceEEEEEeeccCCccceeeEEEeecccCCH
Confidence 446777655222 2334799999999999999 999999 88899999999999985455555 655 445666
Q ss_pred cccccCcc
Q 008661 266 EVAQTWEP 273 (558)
Q Consensus 266 ~~~~hW~~ 273 (558)
+...||.+
T Consensus 95 eE~~HW~e 102 (103)
T cd08684 95 QETDHWLE 102 (103)
T ss_pred HHhhhhhc
Confidence 77799986
No 232
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.90 E-value=0.025 Score=65.87 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=68.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeC--C-----eEEEeeeec-CCCCCccceE-EEEeeccCCCCceEEEEEee
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQLG--P-----YRFRTKTQR-KTLSPKWHEE-FNIPISTWDSPNVLVIEVRD 136 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg--p-----~k~KTkVik-kTlNPvWnEt-F~F~V~~~e~~~tL~V~V~D 136 (558)
++|.|+||+|.-|-.++ ...||.|.+- | ..++|+++. +++||+|+|. |.|.-.-.+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 68899999999997655 4489999983 3 457888876 8999999976 77753322234589999998
Q ss_pred cCCCCCCccEEEEEecccccCCCc
Q 008661 137 KDHFVDDTLGDCTINISDLRDGQR 160 (558)
Q Consensus 137 ~D~~sDDfIGev~IpL~eL~~~~~ 160 (558)
.. ..|||+-.+|+..|..+..
T Consensus 779 Eg---gK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred cC---CceeeeeccchhcccCcce
Confidence 64 4699999999999887754
No 233
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.85 E-value=0.034 Score=44.95 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=43.4
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
...+||+.+.+.. ....+|.+...+.||.|| +.|.|.... .....+.++|++....
T Consensus 18 ~~~~~~v~v~~~~-------~~~~~T~~~~~~~~P~w~-~~~~~~~~~-~~~~~l~i~v~~~~~~ 73 (102)
T cd00030 18 GKSDPYVKVSLGG-------KQKFKTKVVKNTLNPVWN-ETFEFPVLD-PESDTLTVEVWDKDRF 73 (102)
T ss_pred CCCCcEEEEEecc-------CceEecceeCCCCCCccc-ceEEEEccC-CCCCEEEEEEEecCCC
Confidence 3488999999943 355789999999999999 999998222 1566789999997754
No 234
>PLN02223 phosphoinositide phospholipase C
Probab=95.59 E-value=0.021 Score=64.10 Aligned_cols=60 Identities=10% Similarity=-0.057 Sum_probs=43.6
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
...||||++.+.....+. .++||.|..+..||+|| |.|.|. .....-..+.|+|+|+|..
T Consensus 433 s~~DpyV~VeI~Gvp~D~---~~~kT~v~nNg~nPvWn-e~F~F~-i~~PELAlLrf~V~D~D~~ 492 (537)
T PLN02223 433 SKPDLYVRISIAGVPHDE---KIMKTTVKNNEWKPTWG-EEFTFP-LTYPDLALISFEVYDYEVS 492 (537)
T ss_pred CCCCeEEEEEEeeccCCc---ceeEEEeCCCCcCceec-ceeEEE-EEccCceEEEEEEEecCCC
Confidence 347899999995432222 34567788888999999 889998 2334456788999999843
No 235
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.55 E-value=0.12 Score=55.37 Aligned_cols=115 Identities=12% Similarity=0.215 Sum_probs=90.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC------CCceEEEEEeecCCC-
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHF- 140 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e------~~~tL~V~V~D~D~~- 140 (558)
+.|+|++|++++... ...-+|...+......|..+..+-.|.||-.+...+.... .+..|++++|-.|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998652 3456788889999999999999999999999988776311 345799999999843
Q ss_pred C-CCccEEEEEecccc---cCC--CceeeeeecCCC------CceEEEEEEEEEecc
Q 008661 141 V-DDTLGDCTINISDL---RDG--QRHDMWIPLQNI------KIGRLHLAITVLEES 185 (558)
Q Consensus 141 s-DDfIGev~IpL~eL---~~~--~~~e~W~~L~~k------~~GeL~LsL~y~p~~ 185 (558)
+ .+.||.+.++|..+ ..+ .....||+|..- ..-+|.|.|......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 3 78999999999998 444 456789999753 356888888877654
No 236
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.084 Score=56.64 Aligned_cols=114 Identities=10% Similarity=-0.083 Sum_probs=79.7
Q ss_pred eccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccccceEEec
Q 008661 183 EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQ 262 (558)
Q Consensus 183 p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~Gv~v~~ 262 (558)
...+...+.+||||+|+..+ +.-.-|+||....+|+.|-|- ....|+ +.++...+.++||--=|.-+...|+.
T Consensus 283 ~k~~~k~~~apyVkVYlL~~---g~c~ak~ktk~A~kT~~plyq-q~l~f~--~sp~~k~Lq~tv~gdygRmd~k~fmg- 355 (405)
T KOG2060|consen 283 VKPGSKSLPAPYVKVYLLEN---GFCIAKKKTKSARKTLDPLYQ-QQLSFD--QSPPGKYLQGTVWGDYGRMDHKSFMG- 355 (405)
T ss_pred ccCCcccccCceeEEEEcCC---CceecccccccccccCchhhh-hhhhhc--cCCCccEEEEEEeccccccchHHHhh-
Confidence 33344447899999999544 666788899999999999887 666776 44556778889985335555444432
Q ss_pred CCccccccCccccCCCCCcccceeecCCCCccCCCCCCCCCCCCCC
Q 008661 263 PGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDS 308 (558)
Q Consensus 263 pgt~~~~hW~~~l~~~r~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 308 (558)
+.+|-.+-|...--|.+-||.+...+.-.| ++.+.-..+.|
T Consensus 356 ----~aqi~l~eL~ls~~~~igwyKlfgsssl~~-~t~~~~Trr~s 396 (405)
T KOG2060|consen 356 ----VAQIMLDELNLSSSPVIGWYKLFGSSSLVP-PTLGHLTRRQS 396 (405)
T ss_pred ----HHHHHhhhhccccccceeeeeccCCccCCC-cccCcceeecc
Confidence 456777778888889999999998877777 44433333333
No 237
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.19 E-value=0.11 Score=50.32 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=70.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeec
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDK 137 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~ 137 (558)
..++|+|+.+.+|... ....+-||++.| |.. ...|+.+.-...+.|||.+.|.+.- .+....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3689999999999762 234667888755 543 3356555555679999999997763 33456899999997
Q ss_pred CCCC-----------------CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEE
Q 008661 138 DHFV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 182 (558)
Q Consensus 138 D~~s-----------------DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~ 182 (558)
.... ...||.+.++|-+... .| .+|...|.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~L---r~G~~~L~lW~~ 136 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QL---KTGDHTLYMWTY 136 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccc--------hh---hcCCeEEEecCC
Confidence 5321 3577888777765332 12 257777777643
No 238
>PLN02952 phosphoinositide phospholipase C
Probab=95.05 E-value=0.061 Score=61.33 Aligned_cols=58 Identities=10% Similarity=-0.110 Sum_probs=42.2
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.||||++.+..-... ..++||.++.++.||+|| |.|.|. .....-.-+.|+|+|+|..
T Consensus 497 ~D~yV~V~i~G~p~D---~~~~kTkvi~nN~nPvWn-E~F~F~-i~~PELAllrf~V~D~D~~ 554 (599)
T PLN02952 497 PDFYTKMYIVGVPAD---NAKKKTKIIEDNWYPAWN-EEFSFP-LTVPELALLRIEVREYDMS 554 (599)
T ss_pred CCceEEEEEeccCCC---CcceeeeeccCCCCcccC-CeeEEE-EEcCCccEEEEEEEecCCC
Confidence 589999999543222 245689999999999999 789998 1123345778899998743
No 239
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.73 E-value=0.18 Score=48.24 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeec
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDK 137 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~ 137 (558)
..++|+|+.+.++... ..++-||.+.+ +.. ...|+.+.. .++.|||...|.+.- .+....|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3588999999999754 34688988866 442 224444433 579999999997763 33456899999997
Q ss_pred CCCC-----CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEec
Q 008661 138 DHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEE 184 (558)
Q Consensus 138 D~~s-----DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~ 184 (558)
...+ ...||.+.++|-+... .| .+|...|.++..+.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~~~~ 124 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWPVPH 124 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEcCCc
Confidence 6421 2469999999886432 12 26888888876443
No 240
>PLN02230 phosphoinositide phospholipase C 4
Probab=94.29 E-value=0.065 Score=61.05 Aligned_cols=58 Identities=7% Similarity=-0.174 Sum_probs=43.0
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
..||||++.|....... .++||.+..+..||+|| |.|.|. .....-..+.|+|+|+|.
T Consensus 495 ~~DpyV~Vei~Gvp~D~---~~~kT~v~~n~~nP~Wn-eef~F~-l~vPELAllRf~V~d~d~ 552 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDE---VMEKTKIEYDTWTPIWN-KEFIFP-LAVPELALLRVEVHEHDI 552 (598)
T ss_pred CCCceEEEEEEECCCCC---cccceeccCCCCCCccC-CeeEEE-EEcCceeEEEEEEEECCC
Confidence 47999999995432111 34578888899999999 889998 223446778899999875
No 241
>PLN02222 phosphoinositide phospholipase C 2
Probab=94.01 E-value=0.073 Score=60.51 Aligned_cols=58 Identities=9% Similarity=-0.167 Sum_probs=42.6
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
..||||++.|..-.. + ..++||.+++++.||+|| |.|.|. .....-.-+.|.|+|+|.
T Consensus 478 ~~dpyV~Vei~G~p~-D--~~~~rTk~v~nn~nP~W~-e~f~F~-i~~PeLAllRf~V~d~D~ 535 (581)
T PLN02222 478 PPDFYTRVGIAGVPG-D--TVMKKTKTLEDNWIPAWD-EVFEFP-LTVPELALLRLEVHEYDM 535 (581)
T ss_pred CCCeeEEEEEeccCC-C--cceeeeEecCCCCCcccC-CeeEEE-EEcCceeEEEEEEEECCC
Confidence 478999999943211 1 244689999999999999 899998 223445778899999873
No 242
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=93.99 E-value=0.21 Score=45.19 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE 255 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e 255 (558)
++|||.+.+... .+.||.. +.||.|| |.|.|.. + ....++++|||..|..-
T Consensus 23 ~etyV~IKved~-------~kaRTr~---srnd~Wn-E~F~i~V-d--k~nEiel~VyDk~~~~~ 73 (109)
T cd08689 23 PETYVSIKVEDV-------ERARTKP---SRNDRWN-EDFEIPV-E--KNNEEEVIVYDKGGDQP 73 (109)
T ss_pred CCcEEEEEECCE-------EEEeccC---CCCCccc-ceEEEEe-c--CCcEEEEEEEeCCCCee
Confidence 799999999433 3566644 5899999 7799884 3 46788999999765444
No 243
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.87 E-value=0.11 Score=54.72 Aligned_cols=118 Identities=12% Similarity=0.018 Sum_probs=77.2
Q ss_pred eecCCceEEEEEEEEecCCCCCC--CCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEee
Q 008661 60 DVKEPVAYARVEVVEASDMKPSD--LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 136 (558)
Q Consensus 60 ~Yd~~~G~L~VtVieArdL~~~D--~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D 136 (558)
....-.|+|.++++.+++|.-.. .+-+-+-||.+.... .+.+|.+......-.|.|+|...+.. ...|.+-||.
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~vl~~lvyS 121 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IEVLHYLVYS 121 (442)
T ss_pred eeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ceeeeEEEee
Confidence 34556799999999999997543 255678899988765 45577776666777899999998875 4688999999
Q ss_pred cCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661 137 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181 (558)
Q Consensus 137 ~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y 181 (558)
|+... +.+.=.-.+.+..+.. +.-+..+.|.-..+|++-+++.+
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred cCchhhccccccchhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence 98765 5432111222222222 22233333333457777776654
No 244
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.84 E-value=1.3 Score=40.55 Aligned_cols=117 Identities=20% Similarity=0.287 Sum_probs=80.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeec-CCCCCccceEEEEeeccCC-------CCceEEEE
Q 008661 65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQR-KTLSPKWHEEFNIPISTWD-------SPNVLVIE 133 (558)
Q Consensus 65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~---k~KTkVik-kTlNPvWnEtF~F~V~~~e-------~~~tL~V~ 133 (558)
.-.+.|+|.+..+++. ...--||+...+.. ..+|.... ..-.-.|||.|.+.+.-.. ....|.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3468889999999976 22445666666654 34554433 4455789999998765211 23478999
Q ss_pred EeecCCCCC-CccEEEEEecccccCC--CceeeeeecCCC--CceEEEEEEEEEecc
Q 008661 134 VRDKDHFVD-DTLGDCTINISDLRDG--QRHDMWIPLQNI--KIGRLHLAITVLEES 185 (558)
Q Consensus 134 V~D~D~~sD-DfIGev~IpL~eL~~~--~~~e~W~~L~~k--~~GeL~LsL~y~p~~ 185 (558)
|+....-+. ..||.+.|+|.++... .....-++|... ....|.|.|.+....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR 138 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence 998754443 5899999999998764 456667777653 346788888877654
No 245
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.66 E-value=0.37 Score=45.30 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=68.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeec--cCCCCceEEEEEeecC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 138 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~--~~e~~~tL~V~V~D~D 138 (558)
.++|.|....++...+ ....+-||.+.| +.. ...|.......++.|||...|.+. ..+....|.|.||+..
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4778888888876521 234667777765 442 224444434468999999999865 3334568999999986
Q ss_pred CCC---CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661 139 HFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181 (558)
Q Consensus 139 ~~s---DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y 181 (558)
..+ +..||.+.++|-+... .| ..|...|.++-
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~--------~L---~~G~~~l~lW~ 122 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG--------KL---RQGMITLNLWP 122 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC--------cE---ecCCEEEeccC
Confidence 553 4789999999887432 12 25777677664
No 246
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.46 E-value=0.42 Score=45.78 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=61.5
Q ss_pred CCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeeccC--CCCceEEEEEeecCCCC-CCccEEEEEecccc
Q 008661 85 GLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPISTW--DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155 (558)
Q Consensus 85 G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~~--e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL 155 (558)
..++-||.+.| +.. ..+|..+.-+..+.|||...|+|.-. +....|.|+||+....+ ...||.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 44777877766 332 23555555556788999999987632 34568999999987654 66899999998864
Q ss_pred cCCCceeeeeecCCCCceEEEEEEEEEec
Q 008661 156 RDGQRHDMWIPLQNIKIGRLHLAITVLEE 184 (558)
Q Consensus 156 ~~~~~~e~W~~L~~k~~GeL~LsL~y~p~ 184 (558)
.. + | ..|...|.++....
T Consensus 108 ~g------~--L---r~G~~~l~lw~~~~ 125 (159)
T cd08397 108 DG------T--L---RRGRQKLRVWPDVE 125 (159)
T ss_pred CC------c--E---ecCCEEEEEEeCCC
Confidence 21 1 2 26888788775443
No 247
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=91.89 E-value=0.19 Score=56.53 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=48.6
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG 252 (558)
.+.|.||.+.+.. ...||.|..+.|||.||-+-|.|+ -..+++.-++.+.++|+|.
T Consensus 23 d~tdafveik~~n--------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 23 DLTDAFVEIKFAN--------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred ccchheeEEEecc--------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 4578999988832 358999999999999998889999 8889999999999999983
No 248
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.76 E-value=0.64 Score=44.71 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=73.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCeE----EEeeeec----CCCCCccceEEEEeecc--CCCCceEEEE
Q 008661 66 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPYR----FRTKTQR----KTLSPKWHEEFNIPIST--WDSPNVLVIE 133 (558)
Q Consensus 66 G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~k----~KTkVik----kTlNPvWnEtF~F~V~~--~e~~~tL~V~ 133 (558)
..+.|+|..+.+++........+-||.+.| +.+. ..|+... -...+.|||...|.+.- .+....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 458899999999987665556888988866 4432 2443221 12357799999988763 2345689999
Q ss_pred EeecCCCC----------CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEecc
Q 008661 134 VRDKDHFV----------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEES 185 (558)
Q Consensus 134 V~D~D~~s----------DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~~ 185 (558)
||+..... ...||.+.++|-+... .| ..|...|.|+.....
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW~~~~~ 138 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLWPPSKD 138 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEeccCCcc
Confidence 99976543 3588998888876322 12 257888888765443
No 249
>PLN02228 Phosphoinositide phospholipase C
Probab=91.54 E-value=0.22 Score=56.60 Aligned_cols=58 Identities=5% Similarity=-0.191 Sum_probs=42.2
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCCCCCcc-CCCceeecCCCCCCCCceEEEEEeccC
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvw-N~E~F~Fep~e~l~~v~leveV~D~dG 252 (558)
..||||++.+..-..+ ..++||.+.+++.||+| | |.|.|. .....-.-+.|.|+|+|.
T Consensus 457 ~~DpyV~Vei~G~p~D---~~~~rTk~~~n~~nP~W~~-e~f~F~-~~~pELA~lRf~V~D~d~ 515 (567)
T PLN02228 457 PPDFFVKIGIAGVPRD---TVSYRTETAVDQWFPIWGN-DEFLFQ-LRVPELALLWFKVQDYDN 515 (567)
T ss_pred CCCcEEEEEEEecCCC---CCcceeeccCCCCCceECC-CeEEEE-EEcCceeEEEEEEEeCCC
Confidence 4789999999543222 24468888888899999 7 899998 222335677899999873
No 250
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.96 E-value=1.4 Score=43.16 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=63.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe---EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeecCC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY---RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKDH 139 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~---k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~D~ 139 (558)
.++|+|+.+..+ ..+......-||++.| +.. ..+|....-+.++.|||.+.|.+.- .+....|.|.||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 477788887633 3322223345666644 432 2256666666789999999898763 2345689999999732
Q ss_pred CC-----------------CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEec
Q 008661 140 FV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEE 184 (558)
Q Consensus 140 ~s-----------------DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~ 184 (558)
.+ +..||.+.+.|-+... .| ..|...|.++-.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~~~ 140 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQISG 140 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecCCC
Confidence 11 2345555555554221 11 35788777776553
No 251
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.46 E-value=0.85 Score=53.35 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=49.2
Q ss_pred EEEEEEEEeccCC----CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661 175 LHLAITVLEESAK----QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI 250 (558)
Q Consensus 175 L~LsL~y~p~~~~----l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~ 250 (558)
+.|++.++....- .++..|||.+.+..--+... +++.|.|.-+-+||+||++.|.|+ .-..+-.-+.|.|+|-
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~--~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTN--KFKTTVVNDNGLNPIWNPEKFTFE-IYNPEFAFLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCC--ceEEEEeccCCCCCCCCCcceEEE-eeCCceEEEEEEEecc
Confidence 5566665543311 23467999999855444432 334455667779999999999999 3344556778888876
Q ss_pred c
Q 008661 251 E 251 (558)
Q Consensus 251 d 251 (558)
|
T Consensus 1142 D 1142 (1267)
T KOG1264|consen 1142 D 1142 (1267)
T ss_pred c
Confidence 5
No 252
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.21 E-value=2.6 Score=37.41 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=61.0
Q ss_pred CCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceee
Q 008661 85 GLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDM 163 (558)
Q Consensus 85 G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~ 163 (558)
|.++-.+.+.+.+ ...+|.-... .+..|++.|.|.+.. .+.|.|.||=.|- ..+.|-..+.|.+.. +..
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR---sRELEI~VywrD~--RslCav~~lrLEd~~----~~~ 76 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER---SRELEIAVYWRDW--RSLCAVKFLKLEDER----HEV 76 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec---ccEEEEEEEEecc--hhhhhheeeEhhhhc----ccc
Confidence 3367788899887 5567765544 478999999999875 6799999986654 345677778888732 233
Q ss_pred eeecCCCCceEEEEEEEE
Q 008661 164 WIPLQNIKIGRLHLAITV 181 (558)
Q Consensus 164 W~~L~~k~~GeL~LsL~y 181 (558)
-++|. +.|.|...++|
T Consensus 77 ~~~le--pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME--PQLCLVAELTF 92 (98)
T ss_pred eeccc--cccEEEEEEEe
Confidence 45555 46888888887
No 253
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.64 E-value=4.2 Score=40.27 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=41.4
Q ss_pred eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC---CCccEEEEEecc
Q 008661 98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV---DDTLGDCTINIS 153 (558)
Q Consensus 98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s---DDfIGev~IpL~ 153 (558)
..++|-|...+.+|.|+|++.+.++... ....|.|+++...... ...+|.+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 3568999999999999999999998533 3458999888754322 245777777764
No 254
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.05 E-value=3.4 Score=36.29 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=46.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeecC
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKD 138 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~D 138 (558)
+.+.+....++........++-||.+.| +.. ...|+.+.-...+.|||...|.+.- .+....|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777776654433333578888866 442 3355555555568999999987763 234568999999864
No 255
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.91 E-value=5.3 Score=39.85 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=41.3
Q ss_pred eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC-----CCccEEEEEecc
Q 008661 98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-----DDTLGDCTINIS 153 (558)
Q Consensus 98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s-----DDfIGev~IpL~ 153 (558)
..++|-|...+.+|.|+|++.+.++... ....|.|+++...... ...+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4678999889999999999999998533 3558999998764321 235666666664
No 256
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=86.56 E-value=2.5 Score=39.16 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=47.8
Q ss_pred EeeeecCC-CCCccceEEEEeec--cCCCCceEEEEEeecCCCC-C----CccEEEEEecccccCCCceeeeeecCCCCc
Q 008661 101 RTKTQRKT-LSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDHFV-D----DTLGDCTINISDLRDGQRHDMWIPLQNIKI 172 (558)
Q Consensus 101 KTkVikkT-lNPvWnEtF~F~V~--~~e~~~tL~V~V~D~D~~s-D----DfIGev~IpL~eL~~~~~~e~W~~L~~k~~ 172 (558)
.|....-+ .++.|||.+.|.+. ..+....|.|.||..+... . ..||.+.++|-+... .| ..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--------~L---~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--------QL---RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--------BB---EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--------cc---cC
Confidence 56655555 79999999888865 3345669999999988766 3 689999999887532 12 25
Q ss_pred eEEEEEEEE
Q 008661 173 GRLHLAITV 181 (558)
Q Consensus 173 GeL~LsL~y 181 (558)
|...|.++-
T Consensus 92 G~~~L~lW~ 100 (142)
T PF00792_consen 92 GPQKLSLWP 100 (142)
T ss_dssp EEEEEE-EE
T ss_pred CCEEEEEEc
Confidence 777777743
No 257
>PLN02964 phosphatidylserine decarboxylase
Probab=85.55 E-value=1.4 Score=51.01 Aligned_cols=59 Identities=5% Similarity=-0.041 Sum_probs=41.8
Q ss_pred CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCccc
Q 008661 187 KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQE 255 (558)
Q Consensus 187 ~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~~e 255 (558)
.+.+.|+|..+.-..+ +..||.+.++|+||+|| +.-.|+ -..++.- ..+.|||++.-..
T Consensus 64 ~~~~~~~~~~~~~~g~-------~~f~t~~~~~~~~p~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~s~ 123 (644)
T PLN02964 64 EMKFKDKWLACVSFGE-------QTFRTETSDSTDKPVWN-SEKKLLLEKNGPHL--ARISVFETNRLSK 123 (644)
T ss_pred hhccCCcEEEEEEecc-------eeeeeccccccCCcccc-hhhceEeccCCcce--EEEEEEecCCCCH
Confidence 3666788766544222 56899999999999999 777777 3344433 4899999886443
No 258
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=85.13 E-value=3 Score=40.38 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=42.8
Q ss_pred eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC--C--CccEEEEEecccccCCCceeeeeecCCCCc
Q 008661 98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV--D--DTLGDCTINISDLRDGQRHDMWIPLQNIKI 172 (558)
Q Consensus 98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s--D--DfIGev~IpL~eL~~~~~~e~W~~L~~k~~ 172 (558)
..+.|.+..++.+|.|+|+|.+.++... ....|.|++++...-. + ..+|.+.+||-+ . +.. + ..
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~-g~~------i---~d 127 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-N-GTI------I---QD 127 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--T-S-B-----------S
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-C-CeE------e---cC
Confidence 3567888889999999999999998533 3458999999876543 2 689999999987 3 211 1 24
Q ss_pred eEEEEEEEEEec
Q 008661 173 GRLHLAITVLEE 184 (558)
Q Consensus 173 GeL~LsL~y~p~ 184 (558)
|+..|-|.....
T Consensus 128 g~~~L~v~~~~~ 139 (184)
T PF14429_consen 128 GEHELPVYKYDK 139 (184)
T ss_dssp EEEEEEEEE--H
T ss_pred CCEEEEEEEccc
Confidence 666666665443
No 259
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=83.81 E-value=19 Score=35.61 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=62.5
Q ss_pred hccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecC
Q 008661 33 QTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRK 107 (558)
Q Consensus 33 ~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikk 107 (558)
..+|.|..+.++-.+...- ...=.++|.+....+-. ..|.-.|+.+. ....|.|...
T Consensus 4 ~LYVYP~~l~~~~~k~~~k-----------aRNI~V~V~lrd~D~~~-------~~~l~~I~~g~g~~~~~~~~s~V~yh 65 (185)
T cd08697 4 HLYVYPLHLKYDSQKTFAK-----------ARNIAVCIEFRDSDEED-------AKPLKCIYYGPGGGFTTSAYAAVLHH 65 (185)
T ss_pred eEEEcccEEEecccccccc-----------cccEEEEEEEEeCCCCc-------CccceEEecCCCCCcceEEEEEEEEc
Confidence 4578888877665552211 12223556665543211 11222222222 4568889888
Q ss_pred CCCCccceEEEEeeccCC-CCceEEEEEeecCCC------C----CCccEEEEEeccc
Q 008661 108 TLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF------V----DDTLGDCTINISD 154 (558)
Q Consensus 108 TlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~------s----DDfIGev~IpL~e 154 (558)
+.+|.|.|++.+.++... ....|.|++|+..-. . ...+|.+.+||-.
T Consensus 66 ~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 66 NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 999999999999998532 345899999987521 0 2356777777654
No 260
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=82.67 E-value=0.53 Score=55.38 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=53.6
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661 64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 138 (558)
Q Consensus 64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D 138 (558)
-.|.+.+.+.+|..|.. ...-||...+.. .+.+|.++.+|..|.||++|+..+.. .+.+++..++.+
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~---sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE---SQSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh---ccccchhhhccc
Confidence 45889999999999964 345788776633 56799999999999999999988764 567778888765
Q ss_pred C
Q 008661 139 H 139 (558)
Q Consensus 139 ~ 139 (558)
.
T Consensus 829 ~ 829 (1112)
T KOG4269|consen 829 T 829 (1112)
T ss_pred c
Confidence 4
No 261
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=81.00 E-value=17 Score=35.12 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=40.3
Q ss_pred EEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCC-----C-CCccEEEEEeccc
Q 008661 99 RFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF-----V-DDTLGDCTINISD 154 (558)
Q Consensus 99 k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~-----s-DDfIGev~IpL~e 154 (558)
.+.|-+..+ .+|.|+|+|.+.++... ....|.|++|+...- . ...+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 445555555 89999999999997432 356899999987532 2 4578888888875
No 262
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.52 E-value=9.4 Score=36.73 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=52.7
Q ss_pred CCCcEEEEEeCC-eEEEeeeec--CCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEeccccc
Q 008661 86 LADPYVKGQLGP-YRFRTKTQR--KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLR 156 (558)
Q Consensus 86 ~sDPYVkV~Lgp-~k~KTkVik--kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~ 156 (558)
..--|++|++.. ...+|+... ....=.|+|.|.+.+.. ....|.|+||......+.+|+.+.+|+-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 456799999977 445665544 33334678999999986 4678999999988866999999999987654
No 263
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.61 E-value=3 Score=48.63 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=40.8
Q ss_pred CCCCCcceEEecccCCCCceeeEEEeE-ecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661 189 GVDSPCDGGTLNKEGMGNKEDQSNKED-IRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 189 ~lsDPyVKv~L~~~~~~~krlkKKKT~-VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~ 253 (558)
.++||||.+.+..- ..- ..++||. |..+.-||.|+ |.|.|. -....-.-+.|.|+|+|-.
T Consensus 639 ~~~dP~v~VeI~Gv--p~D-~~~~~Tk~v~~NgfnP~W~-e~f~F~-l~vPELAliRF~V~d~d~~ 699 (746)
T KOG0169|consen 639 EISDPDVYVEIAGV--PAD-CAEQKTKVVKNNGFNPIWD-EEFEFQ-LSVPELALIRFEVHDYDYI 699 (746)
T ss_pred ccCCCCEEEEEccc--ccc-hhhhhceeeccCCcCcccC-CeEEEE-EeccceeEEEEEEEecCCC
Confidence 46899999987322 111 2335777 56677999999 899998 3334446677888888733
No 264
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.70 E-value=1.9 Score=49.82 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCccEEEEEecccccC-CCcee
Q 008661 86 LADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHD 162 (558)
Q Consensus 86 ~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~-~~~~e 162 (558)
..+||+.|.+.-. ...+.+.+.+..|.|+++|.+.+.. ...+.|.||...... +.+.-.+.+..+++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~---~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA---GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec---CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 4678988887553 3366668899999999999999775 567888898765443 4444444444444432 22356
Q ss_pred eeeecCCCCceEEEEEEEEEec
Q 008661 163 MWIPLQNIKIGRLHLAITVLEE 184 (558)
Q Consensus 163 ~W~~L~~k~~GeL~LsL~y~p~ 184 (558)
.|..++. .|+++..+.+...
T Consensus 104 ~w~~~~~--~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 104 LWVLIEE--LGTLLKPAALTGT 123 (694)
T ss_pred hcccccc--ccceeeeecccCc
Confidence 7888774 6888888777654
No 265
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=66.40 E-value=12 Score=44.60 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=73.7
Q ss_pred CCcEEEEEeCC-eEEEeeeecCC-CCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCccEEEEEecccccCCCceee
Q 008661 87 ADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM 163 (558)
Q Consensus 87 sDPYVkV~Lgp-~k~KTkVikkT-lNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~ 163 (558)
.++|+.+.|.. ...+|....+. .+|.|.+.|.+.+.. ....+.+.|-+.+..+ ..++|.+.++...+..+.....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h--~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH--KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc--cccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 48898888865 44567766666 789999888776654 4568999999988888 8899999999999998888899
Q ss_pred eeecCCC------CceEEEEEEEEEecc
Q 008661 164 WIPLQNI------KIGRLHLAITVLEES 185 (558)
Q Consensus 164 W~~L~~k------~~GeL~LsL~y~p~~ 185 (558)
|+++... ..-.+.+.+.|.+..
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeec
Confidence 9988642 122455666666654
No 266
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=66.31 E-value=19 Score=35.41 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=42.2
Q ss_pred eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC-------CCccEEEEEeccc
Q 008661 98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-------DDTLGDCTINISD 154 (558)
Q Consensus 98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s-------DDfIGev~IpL~e 154 (558)
....|.|...+.+|.|+|++.+.++... ....|.|++|+..-.. ...+|.+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4568888889999999999999998532 3458999999854321 2457777777764
No 267
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.90 E-value=59 Score=35.41 Aligned_cols=112 Identities=13% Similarity=0.220 Sum_probs=76.6
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCc--cceEEEEeeccCCCCceEEEEEeecCC
Q 008661 62 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPK--WHEEFNIPISTWDSPNVLVIEVRDKDH 139 (558)
Q Consensus 62 d~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPv--WnEtF~F~V~~~e~~~tL~V~V~D~D~ 139 (558)
+.+.-.|.|.|.+-.++. -....|+.+..+...++|..+.-+..-. -.+.....+.. ...+|+|.||-...
T Consensus 54 nHRkF~LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKkL 126 (508)
T PTZ00447 54 NYRTFYLLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTKL 126 (508)
T ss_pred ccceeeEEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEeccc
Confidence 556677888888876663 3456899999999888886554322222 23334444443 56799999998888
Q ss_pred CCCCccEEEEEeccc--ccCCCceeeeeecCC--CCceEEEEEEE
Q 008661 140 FVDDTLGDCTINISD--LRDGQRHDMWIPLQN--IKIGRLHLAIT 180 (558)
Q Consensus 140 ~sDDfIGev~IpL~e--L~~~~~~e~W~~L~~--k~~GeL~LsL~ 180 (558)
.+..-||.+.+.++. +...-+...||-+.. ...+.|.|++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 788899999999885 233345788999964 23466666554
No 268
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=59.89 E-value=27 Score=33.47 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=37.1
Q ss_pred CCCcceEEecccCCCCceeeEE-EeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccC
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSN-KEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKK-KT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG 252 (558)
++.||++.+- ++++.+-.- .|..+. .-++.|| |-+.|. .++-.....+++++|++.+
T Consensus 26 ~~l~V~v~l~---~g~~~L~~pv~T~~v~-~~~~~Wn-EwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 26 DKIYVRTGIY---HGGEPLCDNVNTQRVP-CSNPRWN-EWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CeEEEEEEEE---ECCEEccCeeEecccC-CCCCccc-eeEEcccchhcCChhheEEEEEEEEec
Confidence 4566666662 223333222 233223 3679999 899998 6777778899999999764
No 269
>PLN02270 phospholipase D alpha
Probab=56.46 E-value=16 Score=43.58 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=53.5
Q ss_pred CCCCcceEEecccCCCCceeeEEEeEecCCC-CCCccCCCceeecCCCCCCCCceEEEEEecc--CccccceE-E----e
Q 008661 190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESF-ANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIW-V----H 261 (558)
Q Consensus 190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~T-lNPvwN~E~F~Fep~e~l~~v~leveV~D~d--G~~e~Gv~-v----~ 261 (558)
.++|||-+.+.. .+.-||.++.+. .||+|| |.|..- +... ...++|+|-|-+ |.+--|.. + .
T Consensus 46 ~~~~y~tv~~~~-------a~v~rtr~~~~~~~~p~w~-e~f~i~-~ah~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~ 115 (808)
T PLN02270 46 ESQLYATIDLEK-------ARVGRTRKIENEPKNPRWY-ESFHIY-CAHM-ASNIIFTVKDDNPIGATLIGRAYIPVEEI 115 (808)
T ss_pred CCCceEEEEeCC-------cEEEEEeecCCCCCCCccc-cceEEe-eccC-cceEEEEEecCCccCceEEEEEEEEHHHh
Confidence 489999999932 355789998874 699999 777665 3322 266778887765 44333543 2 1
Q ss_pred cCCccccccCccccCCCCCcc
Q 008661 262 QPGSEVAQTWEPRKGKNRRLD 282 (558)
Q Consensus 262 ~pgt~~~~hW~~~l~~~r~~~ 282 (558)
..|.. ...|-+-++..++|.
T Consensus 116 ~~g~~-i~~~~~~~~~~~~p~ 135 (808)
T PLN02270 116 LDGEE-VDRWVEILDNDKNPI 135 (808)
T ss_pred cCCCc-cccEEeccCCCCCcC
Confidence 23333 478998887655554
No 270
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=52.05 E-value=22 Score=31.12 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=29.4
Q ss_pred eEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCcc
Q 008661 214 EDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQQ 254 (558)
Q Consensus 214 T~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~~ 254 (558)
|..+.-...+.|| |-+.|. .++-.....+++++|++.+..
T Consensus 53 t~~~~~~~~~~Wn-ewl~f~i~i~~LPr~a~L~~~i~~~~~~~ 94 (100)
T smart00142 53 TSYKPFFPSVKWN-EWLTFPIQISDLPREARLCITIYEVKNPS 94 (100)
T ss_pred ecccCCCCCcccc-eeEEccCchhcCChhhEEEEEEEEeeCCc
Confidence 4333434558899 888887 777778889999999875443
No 271
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=48.87 E-value=24 Score=34.63 Aligned_cols=41 Identities=2% Similarity=-0.176 Sum_probs=31.3
Q ss_pred EeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCcc
Q 008661 213 KEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQQ 254 (558)
Q Consensus 213 KT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~~ 254 (558)
.|..+..+-++.|| |-+.|. .++-.....++|++|++.++.
T Consensus 49 ~T~~~~~~~~~~Wn-EwL~f~I~~~dLP~~arLc~ti~~~~~~~ 91 (178)
T cd08399 49 RTSPKPFTEEVLWN-TWLEFDIKIKDLPKGALLNLQIYCGKAPA 91 (178)
T ss_pred eeeccCCCCCcccc-ccEECccccccCChhhEEEEEEEEEecCc
Confidence 44444555679999 889998 777777889999999986543
No 272
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=47.23 E-value=46 Score=31.12 Aligned_cols=60 Identities=8% Similarity=-0.090 Sum_probs=37.7
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCC-CCCccCCCceeec--CCCCCCCCceEEEEEeccCcc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESF-ANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQQ 254 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~T-lNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~~ 254 (558)
.+.||.+.| .++++.+-...++.+... .++.|| |-+.|. ..+-.....+++++|++.+..
T Consensus 28 ~~l~V~~~l---~~g~~~l~~~~~t~~~~~~~~~~Wn-e~l~F~i~~~~LP~~arL~itl~~~~~~~ 90 (156)
T cd08380 28 LKLYVRVQL---YHGGEPLCPPQSTKKVPFSTSVTWN-EWLTFDILISDLPREARLCLSIYAVSEPG 90 (156)
T ss_pred eeEEEEEEE---EECCEEccCceeccCCcCCCCCccc-ceeEccchhhcCChhheEEEEEEEEecCC
Confidence 445666666 222332322333333333 679999 899998 666677789999999987543
No 273
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=46.32 E-value=57 Score=29.39 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=45.5
Q ss_pred EEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCC------CCceEEEEEeecCCCCCCccEEEEEecccccCCC--c
Q 008661 90 YVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQ--R 160 (558)
Q Consensus 90 YVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e------~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~--~ 160 (558)
||.+.+-. +...|.++. +.+|.+|-+-.|.|...+ ....|.|+++..-......||.+.++|..+.... .
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 45555544 455666666 789999988888776321 2457899999866333679999999999986433 2
Q ss_pred eeeeeecCC---CCceEEEEEEEE
Q 008661 161 HDMWIPLQN---IKIGRLHLAITV 181 (558)
Q Consensus 161 ~e~W~~L~~---k~~GeL~LsL~y 181 (558)
......|.+ ..-|.|...+++
T Consensus 81 i~~~~~l~g~~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGEDFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-TSEEEEEEEEE
T ss_pred EEEEEEEeccCCCeEEEEEEEEEe
Confidence 333444432 345777666654
No 274
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.42 E-value=71 Score=31.99 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=48.2
Q ss_pred EEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEec
Q 008661 174 RLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINI 250 (558)
Q Consensus 174 eL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~ 250 (558)
.|.+.+++....+.. +.+++.+ +-+.......+|.|....-+|.|| |.|... |.+.....-|.|++.-.
T Consensus 24 NIeVtv~vr~~~G~~-i~~~i~~------gsg~~~~se~~S~V~Yh~~~P~W~-EtIKl~lP~~~~~~~HL~FtfrH~ 93 (196)
T cd08694 24 NVEVTVSVCNEDGKI-IPGVISL------GAGEEPIDEYKSVIYYQVDKPKWF-ETFKVAIPIEDFKSSHLRFTFKHR 93 (196)
T ss_pred eEEEEEEEECCCCCC-CceeEEc------CCCCCcceeEEEEEEeecCCCCCc-eeEEEecChhhCCCeEEEEEEEee
Confidence 466666665544332 2333322 223445666899999999999999 999999 99999999999998653
No 275
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.00 E-value=33 Score=41.24 Aligned_cols=58 Identities=3% Similarity=-0.155 Sum_probs=36.9
Q ss_pred CcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661 193 PCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEPINIE 251 (558)
Q Consensus 193 PyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d 251 (558)
.||.+-|-.- ..+-+.+++||.+.. +.+||+|++|.|.|.----..-..+.|-||+-.
T Consensus 722 tyVEVdmfgL-P~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg 780 (1189)
T KOG1265|consen 722 TYVEVDMFGL-PTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG 780 (1189)
T ss_pred ceEEEEecCC-CchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC
Confidence 7888877332 222333555665555 559999999999999222223356778888743
No 276
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=42.42 E-value=6 Score=45.60 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=54.6
Q ss_pred eEEEEEEEEecCCCCCC----CCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661 66 AYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 141 (558)
Q Consensus 66 G~L~VtVieArdL~~~D----~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s 141 (558)
|....+++.|.++++.- ..-..+|++...++.+.++|+....+.+|+|||. .|.+..++....|...|.+++.+.
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~ 358 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELD 358 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccccc
Confidence 44445566676664321 1224678999999999999999999999999998 777777666666766676666655
No 277
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=41.75 E-value=3.4e+02 Score=30.42 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=58.5
Q ss_pred CCCcEEEEEeCCeEEEeeeec--C--CCCC-cc---ceEEEEeeccCC----------CCceEEEEEeecCC-----C--
Q 008661 86 LADPYVKGQLGPYRFRTKTQR--K--TLSP-KW---HEEFNIPISTWD----------SPNVLVIEVRDKDH-----F-- 140 (558)
Q Consensus 86 ~sDPYVkV~Lgp~k~KTkVik--k--TlNP-vW---nEtF~F~V~~~e----------~~~tL~V~V~D~D~-----~-- 140 (558)
.+-.||+|.|.+...+|..+. . ..+| .- -..|.+.-...+ ....|+|.||--.. +
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 456799999987555555432 1 1111 11 123444321110 11469999997432 2
Q ss_pred CCCccEEEEEecccccCCC--c---eeeeeecCCCC-------ceEEEEEEEEEecc
Q 008661 141 VDDTLGDCTINISDLRDGQ--R---HDMWIPLQNIK-------IGRLHLAITVLEES 185 (558)
Q Consensus 141 sDDfIGev~IpL~eL~~~~--~---~e~W~~L~~k~-------~GeL~LsL~y~p~~ 185 (558)
+-.+||.+.|+|. +.... . +..|+.+.+.. ..+|||.+...++.
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 2579999999998 32222 2 56799997642 36899988877654
No 278
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=41.51 E-value=31 Score=33.04 Aligned_cols=59 Identities=5% Similarity=-0.081 Sum_probs=38.5
Q ss_pred CCCcceEEecccCCCCceee-EEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQ-SNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlk-KKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~ 253 (558)
++.||.+.|.. +++.+- -..|..+.-+..+.|| |-+.|. .++-.....+++++|++.+.
T Consensus 30 ~~l~V~~~l~~---~~~~L~~pv~T~~~~f~~~~~Wn-Ewl~fpI~i~dLP~~a~L~iti~~~~~~ 91 (159)
T cd08397 30 SDLFVTCQVFD---DGKPLTLPVQTSYKPFKNRRNWN-EWLTLPIKYSDLPRNSQLAITIWDVSGT 91 (159)
T ss_pred CCEEEEEEEEE---CCEeccCcEEccccCCCCCcccc-eeEEcccchhcCChhheEEEEEEEecCC
Confidence 45566665522 222221 1244444545668899 888888 77778889999999999865
No 279
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=40.23 E-value=1.4e+02 Score=26.91 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=47.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEE-EeeeecCCCCCccceEEEEeecc-CCCCceEEEEEeecCC--CCC
Q 008661 67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRF-RTKTQRKTLSPKWHEEFNIPIST-WDSPNVLVIEVRDKDH--FVD 142 (558)
Q Consensus 67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~-KTkVikkTlNPvWnEtF~F~V~~-~e~~~tL~V~V~D~D~--~sD 142 (558)
.|.++=+.-.++|..+..+.+.||++|+-+.... .+........-.=...+.+.+.. ....-.+.|.+|+... ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 3455555556777766677899999999877554 22222111110111223333331 1123467788888763 335
Q ss_pred CccEEEEEeccccc
Q 008661 143 DTLGDCTINISDLR 156 (558)
Q Consensus 143 DfIGev~IpL~eL~ 156 (558)
..|.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 66666666655443
No 280
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=38.17 E-value=86 Score=30.38 Aligned_cols=58 Identities=7% Similarity=-0.115 Sum_probs=37.2
Q ss_pred CCCcceEEecccCCCCceee-EEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccC
Q 008661 191 DSPCDGGTLNKEGMGNKEDQ-SNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEG 252 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlk-KKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG 252 (558)
.+.||++.| .++++.+- ...|..+...-++.|| |-+.|. .++-.....+++++|++.+
T Consensus 27 ~~l~V~~~l---yhG~~~L~~p~~T~~~~~~~~~~Wn-ewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 27 MKVGVQAGL---FHGGESLCKTVKTSEVSGKNDPVWN-ETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred ceEEEEEEE---EECCEEccCceEccccCCCCccccc-eeEEcccchhcCChhHeEEEEEEEecc
Confidence 345566555 22333332 2244444434679999 899998 6677777899999998753
No 281
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=35.91 E-value=1.2e+02 Score=30.09 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=47.0
Q ss_pred EEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEe
Q 008661 174 RLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPIN 249 (558)
Q Consensus 174 eL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D 249 (558)
.|.+.+++....+.. +.++. +. +-+..-....+|.|...+-+|.|| |.|... |.+.....-|.|++.-
T Consensus 24 NIeV~v~v~~~~G~~-~~~cI---~~---~~g~~~~se~~S~V~yH~~~P~W~-EtiKi~lP~~~~~~~HL~FtfrH 92 (189)
T cd08695 24 NIEVTMVVLDADGQV-LKDCI---SL---GSGEPPCSEYRSFVLYHNNSPRWN-ETIKLPIPIDKFRGSHLRFEFRH 92 (189)
T ss_pred eEEEEEEEEcCCCCC-ccCCE---Ec---CCCCCccceEEEEEEEcCCCCCCc-eeEEEecChhhCCCeeEEEEEEE
Confidence 466777776554432 12222 22 122333456899999999999999 999999 9998888888887764
No 282
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=34.27 E-value=4.2e+02 Score=25.30 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=56.1
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEe--CC--------e-EEEeeeecCC-----CCCccceEEEEeeccCC--CCceE
Q 008661 69 RVEVVEASDMKPSDLNGLADPYVKGQL--GP--------Y-RFRTKTQRKT-----LSPKWHEEFNIPISTWD--SPNVL 130 (558)
Q Consensus 69 ~VtVieArdL~~~D~~G~sDPYVkV~L--gp--------~-k~KTkVikkT-----lNPvWnEtF~F~V~~~e--~~~tL 130 (558)
.=.|..|.+.. ..+-||+..+ ++ . ...|.+.... -.-.||--|.+.+.... .--.|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34577777663 2456888877 22 3 4566665433 23468877777665311 22389
Q ss_pred EEEEeecCCCC-CCccEEEEEecccccCCC--ceeeeee
Q 008661 131 VIEVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIP 166 (558)
Q Consensus 131 ~V~V~D~D~~s-DDfIGev~IpL~eL~~~~--~~e~W~~ 166 (558)
.|+||..|..+ +.+.|...+.|-.-.... ....|.+
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~~~v~~wrP 117 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPTQPGRHEVEVPTWRP 117 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCCCCceEEEEEEEEee
Confidence 99999999998 777776655554332221 2345766
No 283
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=33.78 E-value=51 Score=36.28 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=30.6
Q ss_pred ccEEEEEeccc-ccCCCceeeeeecCCC-----CceEEEEEEEEEec
Q 008661 144 TLGDCTINISD-LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE 184 (558)
Q Consensus 144 fIGev~IpL~e-L~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~ 184 (558)
++|.+.|++.. +..+...+.||++.+. ..|.| |.++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 48999999999 6666788999999652 34566 67777654
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=32.20 E-value=1.2e+02 Score=29.16 Aligned_cols=72 Identities=8% Similarity=-0.007 Sum_probs=39.3
Q ss_pred eEEEEEEEEEeccCCCCCCCCcceEEecccCCCC-ceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEec
Q 008661 173 GRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGN-KEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINI 250 (558)
Q Consensus 173 GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~-krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~ 250 (558)
-.|.+.+++....+... +.-.++- ..++ .......|.|...+-+|.|+ |.|... |.+.....-|.|+++..
T Consensus 27 rNi~v~v~lr~~d~~~~---~~~~i~~---~~~~~~~~~~~~S~v~yh~k~P~f~-deiKi~LP~~l~~~~HLlFtf~h~ 99 (184)
T PF14429_consen 27 RNIEVTVELRDSDGNIK---PLPCIYS---RSSGPSFVTSYYSSVYYHNKNPQFN-DEIKIQLPPDLFPKHHLLFTFYHV 99 (184)
T ss_dssp --EEEEEEEEETTS--B-----S-EE----TTS--S-BS-EE----TT-SS-EEE-EEEEEEE-CCCCTTEEEEEEEEE-
T ss_pred ccEEEEEEEEeCCCCcc---ccceEEC---CCCCCCcceEEEEEEEecCCCCCcc-EEEEEEcCchhcccEEEEEEEEee
Confidence 35778888887765420 1111111 1122 34566889999999999999 999999 88888889999999876
Q ss_pred c
Q 008661 251 E 251 (558)
Q Consensus 251 d 251 (558)
.
T Consensus 100 s 100 (184)
T PF14429_consen 100 S 100 (184)
T ss_dssp -
T ss_pred c
Confidence 5
No 285
>PLN02352 phospholipase D epsilon
Probab=29.16 E-value=90 Score=37.25 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=49.4
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccccceE-E--e--cCCc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIW-V--H--QPGS 265 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~Gv~-v--~--~pgt 265 (558)
.+|||-+.+. +. +.-|| .+.-||+|| |.|..- +.......++|+|-| |.+--|.. + . ..|.
T Consensus 36 ~~~y~tv~~~-----~~--~v~rt---~~~~~p~w~-e~f~i~-~ah~~~~~~~f~vk~--~~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 36 KATYVTIKIG-----NK--KVAKT---SHEYDRVWN-QTFQIL-CAHPLDSTITITLKT--KCSILGRFHIQAHQIVTEA 101 (758)
T ss_pred CCceEEEEeC-----Cc--EEecC---CCCCCCccc-cceeEE-eeeecCCcEEEEEec--CCeEEEEEEEEHHHhhCCC
Confidence 3899999992 22 33455 445699999 777654 444444567788776 53323543 2 1 2343
Q ss_pred cccccCccccCCCCCcc--ccee
Q 008661 266 EVAQTWEPRKGKNRRLD--TLVR 286 (558)
Q Consensus 266 ~~~~hW~~~l~~~r~~~--~q~~ 286 (558)
..-..|-+-++..++|. +.+|
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~~~ 124 (758)
T PLN02352 102 SFINGFFPLIMENGKPNPELKLR 124 (758)
T ss_pred cccceEEEcccCCCCCCCCCEEE
Confidence 32478998888766665 4444
No 286
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=26.88 E-value=50 Score=30.47 Aligned_cols=57 Identities=9% Similarity=-0.071 Sum_probs=37.0
Q ss_pred CcceEEecccCCCCceee--EEEeEecCCC-CCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661 193 PCDGGTLNKEGMGNKEDQ--SNKEDIRESF-ANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ 253 (558)
Q Consensus 193 PyVKv~L~~~~~~~krlk--KKKT~VkK~T-lNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~ 253 (558)
.||.+.| .++++.+- .+.|...... .++.|| |-+.|. .++-.....+++++|.....
T Consensus 4 ~~V~~~l---y~g~~~L~~p~~~T~~~~~~~~~~~W~-e~l~F~i~i~~LPr~a~L~~~l~~~~~~ 65 (142)
T PF00792_consen 4 LYVECQL---YHGGEPLCNPVQSTSYVPFSFSRPKWD-EWLTFPIPISDLPREARLCFTLYGVDSK 65 (142)
T ss_dssp EEEEEEE---EETTEESS-EEEE-S-EESS-SSEEEE-EEEEEEEEGGGS-TTEEEEEEEEEEECS
T ss_pred EEEEEEE---EECCEEeecCeeeccccccccccceEe-eEEEeecChHHCChhHeEEEEEEEecCC
Confidence 3455555 23344433 2355555555 799999 899998 77888889999999987643
No 287
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=26.66 E-value=95 Score=29.56 Aligned_cols=56 Identities=7% Similarity=-0.155 Sum_probs=39.1
Q ss_pred CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C-------------CCCCCCCceEEEEEecc
Q 008661 191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S-------------SEKSPKVADNFEPINIE 251 (558)
Q Consensus 191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p-------------~e~l~~v~leveV~D~d 251 (558)
-++|+++.+-. -...+.++|..+.++-.|.|| .-|.|- + .+-|+...+.++||...
T Consensus 33 VN~yv~i~lSF----l~~~e~r~TrtVArSFcPeF~-Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~ 102 (143)
T cd08683 33 VNSYVTIHLSF----LPEKELRRTRTVARSFCPEFN-HHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRN 102 (143)
T ss_pred cceEEEEEecc----CCCCceeeccchhhhcCCCcc-ceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecC
Confidence 56888888622 133456789999999999999 666665 2 13455667778888655
No 288
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=23.59 E-value=3.7e+02 Score=25.67 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=58.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccC-----------CCCceEEEEEee
Q 008661 68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-----------DSPNVLVIEVRD 136 (558)
Q Consensus 68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~-----------e~~~tL~V~V~D 136 (558)
|.|+-+.|-|.- ....-|-|..|++.++.++|+-..-..-=.|+|.|.|.-.-. -....+.|+++.
T Consensus 4 L~i~aVTCPGv~---L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVW---LCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeE---eCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 566666664432 234578999999999999998776665556789999863210 124578888888
Q ss_pred cCCCCCCccEEEEEeccccc
Q 008661 137 KDHFVDDTLGDCTINISDLR 156 (558)
Q Consensus 137 ~D~~sDDfIGev~IpL~eL~ 156 (558)
+.......|....-.+.++.
T Consensus 81 l~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EeCCCCcEEEEEeccccceE
Confidence 76555666776666666654
Done!