Query 008662
Match_columns 558
No_of_seqs 528 out of 1747
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:00:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.8 4.1E-20 9E-25 161.8 10.5 99 271-397 10-109 (109)
2 cd01518 RHOD_YceA Member of th 99.8 1.1E-19 2.5E-24 156.7 9.5 98 272-394 3-100 (101)
3 cd01527 RHOD_YgaP Member of th 99.8 5.3E-19 1.1E-23 151.6 10.1 98 271-400 2-99 (99)
4 PRK00162 glpE thiosulfate sulf 99.8 6E-19 1.3E-23 154.2 9.9 102 270-402 4-105 (108)
5 cd01534 4RHOD_Repeat_3 Member 99.8 6E-19 1.3E-23 150.8 9.2 94 273-395 1-95 (95)
6 cd01523 RHOD_Lact_B Member of 99.8 1.2E-18 2.5E-23 149.9 9.8 99 273-394 1-99 (100)
7 PLN02160 thiosulfate sulfurtra 99.8 1.3E-18 2.8E-23 160.1 10.4 114 271-404 15-130 (136)
8 cd01519 RHOD_HSP67B2 Member of 99.8 1.1E-18 2.5E-23 150.5 7.8 105 274-395 2-106 (106)
9 cd01448 TST_Repeat_1 Thiosulfa 99.8 2.1E-18 4.5E-23 153.2 9.4 110 273-397 2-122 (122)
10 cd01521 RHOD_PspE2 Member of t 99.7 7.2E-18 1.6E-22 148.2 10.6 101 270-400 7-110 (110)
11 cd01526 RHOD_ThiF Member of th 99.7 6E-18 1.3E-22 151.5 9.5 111 270-400 7-118 (122)
12 cd01449 TST_Repeat_2 Thiosulfa 99.7 3.6E-18 7.9E-23 150.3 8.0 107 273-395 1-118 (118)
13 cd01444 GlpE_ST GlpE sulfurtra 99.7 7.5E-18 1.6E-22 142.7 9.1 93 272-394 1-95 (96)
14 cd01528 RHOD_2 Member of the R 99.7 1.4E-17 2.9E-22 143.8 10.3 97 272-395 1-98 (101)
15 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.5E-17 3.2E-22 157.5 10.7 110 271-400 36-162 (162)
16 cd01520 RHOD_YbbB Member of th 99.7 2.1E-17 4.6E-22 149.5 11.1 105 273-395 1-126 (128)
17 cd01525 RHOD_Kc Member of the 99.7 1.3E-17 2.9E-22 143.9 9.1 100 273-394 1-104 (105)
18 cd01447 Polysulfide_ST Polysul 99.7 2E-17 4.4E-22 141.5 8.5 102 273-397 1-103 (103)
19 smart00450 RHOD Rhodanese Homo 99.7 2.1E-17 4.6E-22 137.5 8.3 99 285-399 2-100 (100)
20 PF00581 Rhodanese: Rhodanese- 99.7 2.7E-17 5.9E-22 141.3 9.3 108 274-396 1-113 (113)
21 cd01535 4RHOD_Repeat_4 Member 99.7 2.6E-17 5.7E-22 153.1 9.5 98 278-405 2-99 (145)
22 cd01524 RHOD_Pyr_redox Member 99.7 2.8E-17 6.2E-22 139.1 8.9 89 273-394 1-89 (90)
23 PRK08762 molybdopterin biosynt 99.7 5.4E-17 1.2E-21 171.8 11.5 108 271-408 3-110 (376)
24 cd01530 Cdc25 Cdc25 phosphatas 99.7 5.3E-17 1.1E-21 146.3 9.6 100 271-394 2-120 (121)
25 PRK11493 sseA 3-mercaptopyruva 99.7 4.3E-17 9.3E-22 166.0 9.7 119 272-405 6-138 (281)
26 COG0607 PspE Rhodanese-related 99.7 5.5E-17 1.2E-21 139.9 8.9 94 281-402 14-108 (110)
27 PRK11493 sseA 3-mercaptopyruva 99.7 7E-17 1.5E-21 164.4 11.1 111 276-403 158-280 (281)
28 KOG1530 Rhodanese-related sulf 99.7 4.7E-17 1E-21 148.5 7.8 115 269-401 21-135 (136)
29 PLN02723 3-mercaptopyruvate su 99.7 1.2E-16 2.7E-21 166.0 11.5 115 273-403 192-318 (320)
30 PLN02723 3-mercaptopyruvate su 99.7 1E-16 2.2E-21 166.6 10.1 119 271-404 22-153 (320)
31 cd01532 4RHOD_Repeat_1 Member 99.7 9.5E-17 2.1E-21 137.0 7.8 84 284-395 7-92 (92)
32 cd01522 RHOD_1 Member of the R 99.7 8.1E-17 1.7E-21 143.7 7.6 103 273-395 1-104 (117)
33 cd01529 4RHOD_Repeats Member o 99.7 1.5E-16 3.2E-21 136.1 8.4 87 285-395 10-96 (96)
34 cd01445 TST_Repeats Thiosulfat 99.7 1.5E-16 3.3E-21 146.7 8.8 108 273-394 1-137 (138)
35 PRK09629 bifunctional thiosulf 99.7 2.3E-16 4.9E-21 176.8 10.4 119 271-404 9-131 (610)
36 cd01531 Acr2p Eukaryotic arsen 99.7 3.2E-16 7E-21 138.2 8.8 101 271-396 2-112 (113)
37 COG2897 SseA Rhodanese-related 99.6 4.5E-16 9.8E-21 159.7 10.0 157 227-403 76-283 (285)
38 PRK09629 bifunctional thiosulf 99.6 1.4E-15 3.1E-20 170.4 12.0 115 273-403 149-272 (610)
39 PRK01415 hypothetical protein; 99.6 1.5E-15 3.3E-20 153.1 10.4 102 271-397 112-213 (247)
40 TIGR02981 phageshock_pspE phag 99.6 1.7E-15 3.7E-20 133.3 8.1 81 286-395 17-97 (101)
41 cd00158 RHOD Rhodanese Homolog 99.6 1.6E-15 3.4E-20 125.0 7.0 88 278-394 2-89 (89)
42 PRK05320 rhodanese superfamily 99.6 3.1E-15 6.8E-20 151.6 9.9 103 270-396 109-216 (257)
43 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 3.4E-15 7.4E-20 131.9 8.8 99 271-394 2-112 (113)
44 COG2897 SseA Rhodanese-related 99.6 4.9E-15 1.1E-19 152.1 10.2 121 271-406 11-142 (285)
45 PRK07878 molybdopterin biosynt 99.6 7.6E-15 1.6E-19 156.6 10.6 177 189-399 184-387 (392)
46 PRK10287 thiosulfate:cyanide s 99.6 6E-15 1.3E-19 130.6 8.1 81 286-395 19-99 (104)
47 PRK00142 putative rhodanese-re 99.6 1.4E-14 3E-19 150.8 10.6 101 271-396 112-212 (314)
48 PRK07411 hypothetical protein; 99.5 3.8E-14 8.1E-19 151.4 10.7 180 189-400 176-386 (390)
49 PRK11784 tRNA 2-selenouridine 99.5 2.3E-13 5E-18 143.4 11.0 113 274-402 4-135 (345)
50 cd01446 DSP_MapKP N-terminal r 99.4 4.8E-13 1E-17 121.1 10.6 106 272-395 1-126 (132)
51 PRK05597 molybdopterin biosynt 99.4 1.8E-13 3.9E-18 144.4 8.8 171 189-396 166-355 (355)
52 KOG2017 Molybdopterin synthase 99.4 6.8E-14 1.5E-18 145.2 5.4 182 185-396 200-419 (427)
53 TIGR03167 tRNA_sel_U_synt tRNA 99.4 2E-13 4.4E-18 141.9 8.6 107 287-403 2-122 (311)
54 PRK05600 thiamine biosynthesis 99.4 5.9E-13 1.3E-17 141.4 7.7 170 189-391 182-369 (370)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.1 2.6E-10 5.6E-15 125.1 7.7 73 286-388 406-482 (482)
56 KOG1529 Mercaptopyruvate sulfu 99.0 6.8E-10 1.5E-14 113.5 8.8 123 271-405 5-139 (286)
57 COG1054 Predicted sulfurtransf 98.9 1.4E-09 3E-14 111.8 5.7 99 272-395 114-212 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.5 3.5E-07 7.5E-12 93.9 9.3 94 286-395 171-275 (286)
59 KOG3772 M-phase inducer phosph 98.5 2.6E-07 5.7E-12 96.4 6.8 103 271-396 156-276 (325)
60 PRK09564 coenzyme A disulfide 97.9 4.4E-06 9.6E-11 89.5 1.5 113 110-255 299-415 (444)
61 PRK07846 mycothione reductase; 97.8 5.1E-06 1.1E-10 90.3 0.4 127 92-256 294-425 (451)
62 TIGR01424 gluta_reduc_2 glutat 97.7 7E-06 1.5E-10 88.8 0.1 127 92-255 295-425 (446)
63 PRK06370 mercuric reductase; V 97.7 8.2E-06 1.8E-10 88.5 0.2 126 92-255 303-432 (463)
64 PRK14727 putative mercuric red 97.6 1.3E-05 2.9E-10 87.6 0.7 126 92-256 315-444 (479)
65 TIGR03385 CoA_CoA_reduc CoA-di 97.6 1.9E-05 4.1E-10 84.6 1.5 101 110-237 286-390 (427)
66 PRK05249 soluble pyridine nucl 97.5 3.4E-05 7.4E-10 83.4 1.6 127 92-256 304-433 (461)
67 PRK06416 dihydrolipoamide dehy 97.5 2.4E-05 5.1E-10 84.7 0.4 126 92-256 303-432 (462)
68 PRK13512 coenzyme A disulfide 97.5 3E-05 6.4E-10 83.9 1.0 112 110-255 294-409 (438)
69 PRK06467 dihydrolipoamide dehy 97.4 3.7E-05 8E-10 84.1 0.7 125 92-256 306-435 (471)
70 TIGR02053 MerA mercuric reduct 97.4 3.6E-05 7.8E-10 83.5 0.2 125 92-255 298-427 (463)
71 PRK13748 putative mercuric red 97.4 4.4E-05 9.5E-10 84.7 0.8 124 93-255 398-525 (561)
72 PRK07818 dihydrolipoamide dehy 97.4 4.9E-05 1.1E-09 82.7 0.8 127 92-256 305-436 (466)
73 PRK05976 dihydrolipoamide dehy 97.4 5.2E-05 1.1E-09 82.6 0.6 127 93-256 313-442 (472)
74 PRK08010 pyridine nucleotide-d 97.3 6.6E-05 1.4E-09 80.9 0.8 128 92-256 286-417 (441)
75 TIGR03452 mycothione_red mycot 97.3 7E-05 1.5E-09 81.5 0.2 125 93-256 298-428 (452)
76 PRK06292 dihydrolipoamide dehy 97.2 8.4E-05 1.8E-09 80.3 0.3 128 92-256 300-430 (460)
77 PRK06116 glutathione reductase 97.2 8.4E-05 1.8E-09 80.3 0.2 127 92-255 297-429 (450)
78 PRK14694 putative mercuric red 97.2 0.0001 2.2E-09 80.4 0.6 125 93-256 305-433 (468)
79 COG5105 MIH1 Mitotic inducer, 97.2 0.00066 1.4E-08 71.1 6.3 99 270-395 241-357 (427)
80 PRK07845 flavoprotein disulfid 97.1 0.00014 3E-09 79.4 0.9 125 93-256 307-436 (466)
81 PRK06115 dihydrolipoamide dehy 97.1 0.00012 2.7E-09 79.8 0.4 122 93-255 308-435 (466)
82 PTZ00153 lipoamide dehydrogena 97.1 0.00014 3E-09 83.3 0.7 136 92-255 464-629 (659)
83 PLN02546 glutathione reductase 97.1 0.00013 2.8E-09 82.1 0.1 127 93-256 383-512 (558)
84 TIGR01423 trypano_reduc trypan 97.1 0.00015 3.2E-09 80.1 0.5 127 91-255 319-450 (486)
85 PLN02507 glutathione reductase 97.1 0.00019 4E-09 79.4 1.3 124 93-255 333-462 (499)
86 PRK06912 acoL dihydrolipoamide 96.9 0.00024 5.3E-09 77.2 0.4 126 93-256 300-428 (458)
87 PRK06327 dihydrolipoamide dehy 96.8 0.00034 7.4E-09 76.5 0.7 128 91-256 315-445 (475)
88 PTZ00058 glutathione reductase 96.8 0.00033 7.1E-09 78.9 -0.1 112 110-255 414-536 (561)
89 TIGR01421 gluta_reduc_1 glutat 96.7 0.00035 7.6E-09 76.1 -0.1 125 92-256 297-430 (450)
90 TIGR01350 lipoamide_DH dihydro 96.6 0.00051 1.1E-08 74.2 0.3 128 91-256 300-431 (461)
91 PRK07251 pyridine nucleotide-d 96.6 0.00064 1.4E-08 73.3 0.6 115 110-256 298-416 (438)
92 PF02852 Pyr_redox_dim: Pyridi 96.6 0.0001 2.2E-09 65.0 -4.7 81 144-256 9-90 (110)
93 TIGR01438 TGR thioredoxin and 96.0 0.0018 3.9E-08 71.5 -0.0 126 92-256 312-448 (484)
94 COG2603 Predicted ATPase [Gene 95.7 0.015 3.3E-07 60.6 5.5 109 276-395 6-128 (334)
95 PTZ00052 thioredoxin reductase 95.2 0.0073 1.6E-07 66.9 1.0 69 92-165 309-382 (499)
96 TIGR01244 conserved hypothetic 94.1 0.095 2E-06 48.4 5.4 112 270-402 12-130 (135)
97 PF04273 DUF442: Putative phos 93.7 0.078 1.7E-06 47.9 4.0 88 270-374 12-105 (110)
98 PF13350 Y_phosphatase3: Tyros 89.0 1.5 3.3E-05 41.3 7.5 32 270-302 27-58 (164)
99 COG1249 Lpd Pyruvate/2-oxoglut 88.7 0.17 3.6E-06 56.1 0.9 103 93-224 305-410 (454)
100 KOG1093 Predicted protein kina 84.4 0.4 8.6E-06 54.3 0.9 97 271-393 622-718 (725)
101 PLN02777 photosystem I P subun 82.7 1.8 4E-05 41.9 4.5 38 447-484 123-160 (167)
102 PRK00142 putative rhodanese-re 82.5 0.19 4.2E-06 53.0 -2.4 53 269-331 12-64 (314)
103 PF11127 DUF2892: Protein of u 81.5 3 6.5E-05 33.8 4.8 45 429-477 14-58 (66)
104 cd00127 DSPc Dual specificity 80.9 5.9 0.00013 35.4 7.0 27 354-380 80-109 (139)
105 KOG1717 Dual specificity phosp 80.8 1.4 3.1E-05 46.0 3.2 101 272-395 5-123 (343)
106 PRK14989 nitrite reductase sub 80.0 0.81 1.8E-05 54.5 1.4 93 93-224 276-372 (847)
107 PF14159 CAAD: CAAD domains of 69.1 7.1 0.00015 34.2 4.1 37 447-483 48-84 (90)
108 COG0446 HcaD Uncharacterized N 67.3 7.9 0.00017 40.2 4.8 97 108-237 290-391 (415)
109 COG3453 Uncharacterized protei 67.0 12 0.00026 35.0 5.3 85 270-374 13-106 (130)
110 smart00195 DSPc Dual specifici 64.3 12 0.00026 33.7 4.8 28 353-380 76-106 (138)
111 PF05706 CDKN3: Cyclin-depende 63.7 16 0.00034 35.8 5.7 82 289-380 74-160 (168)
112 PF01451 LMWPc: Low molecular 59.0 7.8 0.00017 35.2 2.6 36 358-393 1-41 (138)
113 PLN02806 complex I subunit 55.5 13 0.00028 32.2 3.0 55 428-488 5-68 (81)
114 PF09992 DUF2233: Predicted pe 54.2 17 0.00037 34.2 4.1 40 354-393 99-143 (170)
115 TIGR03167 tRNA_sel_U_synt tRNA 53.9 19 0.00041 38.2 4.8 33 272-305 137-172 (311)
116 PF03853 YjeF_N: YjeF-related 51.3 24 0.00051 33.8 4.6 50 353-403 23-87 (169)
117 smart00226 LMWPc Low molecular 49.2 17 0.00038 33.0 3.2 36 358-393 1-37 (140)
118 PLN02727 NAD kinase 48.8 33 0.00072 41.6 6.1 93 270-376 266-364 (986)
119 COG0062 Uncharacterized conser 44.0 37 0.00081 34.1 4.9 31 355-386 49-82 (203)
120 PLN03050 pyridoxine (pyridoxam 42.0 37 0.0008 34.9 4.6 31 355-386 60-93 (246)
121 PF02590 SPOUT_MTase: Predicte 40.7 80 0.0017 30.3 6.4 74 348-421 60-144 (155)
122 cd00115 LMWPc Substituted upda 39.4 33 0.00071 31.4 3.4 37 357-393 2-40 (141)
123 PF00782 DSPc: Dual specificit 35.2 54 0.0012 29.1 4.1 28 353-380 71-101 (133)
124 PRK10126 tyrosine phosphatase; 34.6 45 0.00097 31.1 3.6 37 356-393 3-40 (147)
125 TIGR00197 yjeF_nterm yjeF N-te 34.6 59 0.0013 32.2 4.6 33 353-386 43-78 (205)
126 PRK12361 hypothetical protein; 34.2 2.6E+02 0.0057 31.6 10.2 24 353-376 173-198 (547)
127 TIGR02689 ars_reduc_gluta arse 33.7 69 0.0015 29.0 4.6 35 357-391 2-37 (126)
128 PTZ00242 protein tyrosine phos 31.8 2.2E+02 0.0048 27.3 7.9 26 353-378 96-123 (166)
129 COG2453 CDC14 Predicted protei 31.7 47 0.001 32.1 3.3 28 353-380 103-133 (180)
130 PRK10565 putative carbohydrate 31.0 67 0.0014 36.4 4.8 33 353-386 58-93 (508)
131 PRK11391 etp phosphotyrosine-p 30.6 60 0.0013 30.3 3.7 37 356-393 3-40 (144)
132 KOG3636 Uncharacterized conser 30.3 2E+02 0.0043 32.7 8.0 21 288-308 327-347 (669)
133 PLN03049 pyridoxine (pyridoxam 29.5 73 0.0016 35.7 4.8 44 356-400 60-116 (462)
134 PF05957 DUF883: Bacterial pro 27.6 87 0.0019 27.1 3.9 55 69-123 5-59 (94)
135 PRK00103 rRNA large subunit me 27.5 2.4E+02 0.0053 27.1 7.3 71 351-421 63-144 (157)
136 PLN02918 pyridoxine (pyridoxam 27.3 84 0.0018 36.1 4.8 44 356-400 136-192 (544)
137 cd02071 MM_CoA_mut_B12_BD meth 26.4 1.6E+02 0.0035 26.4 5.6 47 355-401 50-106 (122)
138 PRK13530 arsenate reductase; P 24.6 1.2E+02 0.0027 27.8 4.6 35 356-390 4-39 (133)
139 PF04722 Ssu72: Ssu72-like pro 24.5 1.1E+02 0.0023 30.9 4.3 29 357-386 3-32 (195)
140 COG2085 Predicted dinucleotide 23.7 3.9E+02 0.0085 27.2 8.2 27 355-381 147-174 (211)
141 PF02302 PTS_IIB: PTS system, 23.0 1E+02 0.0022 25.7 3.4 32 357-389 1-37 (90)
142 TIGR02374 nitri_red_nirB nitri 21.9 63 0.0014 38.4 2.6 61 92-154 266-330 (785)
143 PF13344 Hydrolase_6: Haloacid 21.7 1.3E+02 0.0027 26.4 3.9 28 354-381 29-57 (101)
144 TIGR00640 acid_CoA_mut_C methy 20.6 6.8E+02 0.015 23.1 8.8 49 354-402 52-110 (132)
145 PF03162 Y_phosphatase2: Tyros 20.3 82 0.0018 30.3 2.6 39 353-395 89-129 (164)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=4.1e-20 Score=161.76 Aligned_cols=99 Identities=26% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
..++++++.++++..++.+|||||++.||..+|||||+ |+|+.++...+.++.
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l~------------------- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGELA------------------- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhcC-------------------
Confidence 57999999999865446789999999999999999999 999877655443321
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCC-EEEecchHHHHHHcC
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 397 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~n-Vy~LdGG~~aWkaAG 397 (558)
.+++++|||||++|.||..+++.|+.+||++ |++|+||+.+|+.+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1467899999999999999999999999987 999999999999876
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=1.1e-19 Score=156.69 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=82.0
Q ss_pred CcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcc
Q 008662 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 272 ~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~ 351 (558)
.|+++++.+++. +++.+|||||++.||..+|||||+ |+|+.++......+ .+ +..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~~-------~~---------~~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFWL-------DE---------NLD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHHH-------Hh---------hhh
Confidence 589999999985 567899999999999999999999 99987765422211 00 001
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 352 ~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
.+++++|||||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2688999999999999999999999999999999999999996
No 3
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.79 E-value=5.3e-19 Score=151.58 Aligned_cols=98 Identities=29% Similarity=0.470 Sum_probs=85.3
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
..|+++++.+++.. +.+|||+|+++||..+|||||+ |+|+.++.....
T Consensus 2 ~~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~---------------------- 49 (99)
T cd01527 2 TTISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL---------------------- 49 (99)
T ss_pred CccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------
Confidence 36899999999864 3899999999999999999999 899876654211
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCe
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV 400 (558)
..+++++||+||++|.|+..+++.|+++||++|++++||+.+|+.+|+|+
T Consensus 50 ~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 50 PLVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 03678999999999999999999999999999999999999999999875
No 4
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.78 E-value=6e-19 Score=154.19 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=89.1
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhh
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~L 349 (558)
...++++++.+++. +++.++||||++.||..+|||||+ |+|+.++...+.+
T Consensus 4 ~~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~-------------------- 54 (108)
T PRK00162 4 FECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQ-------------------- 54 (108)
T ss_pred ccccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHh--------------------
Confidence 35799999999985 356899999999999999999999 8987665443322
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeec
Q 008662 350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 350 k~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~ 402 (558)
++++++|+|||.+|.+|..+++.|+..||++|++++||+.+|+..++|++.
T Consensus 55 --~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 55 --ADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred --cCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 367899999999999999999999999999999999999999999999876
No 5
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=6e-19 Score=150.84 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=78.6
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcc
Q 008662 273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 273 ISp~Ea~elL~~~-~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~ 351 (558)
|+++|+.+++.++ ++.+|||||++.||..+|||||+ |+|+.++.....++.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6889999999654 35789999999999999999999 999866544332221
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 352 ~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
..++++||+||++|.||..+++.|+.+||+ |++|+||+.+|+.
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 135789999999999999999999999998 9999999999963
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.77 E-value=1.2e-18 Score=149.94 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=80.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhccc
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 352 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~ 352 (558)
|+++++.++++++++++|||||++.||+.+|||||+ |+|+.++....... .... +..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~~--------~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EEDI--------LDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHHH--------HhhC
Confidence 688999999976567899999999999999999999 99987664332000 0000 1124
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 353 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 353 ~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
+++++|||||.+|.||..++..|+++||+ +++|.||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 68899999999999999999999999998 999999999996
No 7
>PLN02160 thiosulfate sulfurtransferase
Probab=99.77 E-value=1.3e-18 Score=160.14 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=88.0
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCc--cccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhh
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA--~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~ 348 (558)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+. .... +.+++++.++. +
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~-~~~~-l~~~~~~~~~~-~----- 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNT-PQGR-VKNQEFLEQVS-S----- 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcC-cccc-cCCHHHHHHHH-h-----
Confidence 57899999999853 468999999999999999999 6 77764331 1111 11111111111 0
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccC
Q 008662 349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 404 (558)
Q Consensus 349 Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~ 404 (558)
.++++++||+||++|.||..++..|.+.||++|++|.|||.+|+++|+|+++..
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 126788999999999999999999999999999999999999999999998854
No 8
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=1.1e-18 Score=150.52 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=84.5
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccC
Q 008662 274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 353 (558)
Q Consensus 274 Sp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~ 353 (558)
|++++.++++..++.+|||+|++.||..||||||+ |+|+.++.+. ...+++.+.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888742467999999999999999999999 8998765432 12233445554444444 5
Q ss_pred CCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 354 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 354 kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
++++||+||.+|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 9
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.76 E-value=2.1e-18 Score=153.19 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=92.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCCh-------hhHhhCCCCCccccccccccccCcccccch---hHhhhcCchhhhhHHH
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 342 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~-------~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~---l~ell~~~~~L~~ll~ 342 (558)
++++++.+++. +++.+|||+|++ .+|..+|||||+ |+|+.++... ....+++.+++.+.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 78999999985 357899999999 999999999999 8888665432 2335566667777776
Q ss_pred HHHHhhhcccCCCceEEEEeCC-CchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 008662 343 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 397 (558)
Q Consensus 343 aaGI~~Lk~~~kdk~IVVyC~s-G~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAG 397 (558)
..++ +++++|||||++ |.++..+++.|+.+||++|++|+|||.+|+++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6665 689999999999 589999999999999999999999999999875
No 10
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.74 E-value=7.2e-18 Score=148.23 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=84.9
Q ss_pred CCCcCHHHHHHHHhCC-CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhh
Q 008662 270 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~-~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~ 348 (558)
...++++++.++++++ ++.+|||||++.||..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3579999999999754 46899999999999999999999 888766542111
Q ss_pred hcccCCCceEEEEeCCCc--hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCe
Q 008662 349 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 349 Lk~~~kdk~IVVyC~sG~--RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV 400 (558)
..++++++||+||++|. ++..+++.|+++||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 11368999999999884 899999999999994 999999999999999985
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=6e-18 Score=151.50 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=88.9
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhh
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~L 349 (558)
...|+++++.+++++.++++|||||++.||..+|||||+ |+|+.++.+...++.+. .+...+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~~------~~~~~~---- 68 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKSL------QELPLD---- 68 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhhh------hhcccc----
Confidence 457999999999865467899999999999999999999 99987765543322100 011111
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccC-CCEEEecchHHHHHHcCCCe
Q 008662 350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 350 k~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf-~nVy~LdGG~~aWkaAGLPV 400 (558)
.+++++||+||++|.||..+++.|+..|| ++|++++||+.+|+....+.
T Consensus 69 --~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 69 --NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred --cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 36789999999999999999999999999 79999999999999876543
No 12
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.74 E-value=3.6e-18 Score=150.33 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=89.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhh-----------CCCCCccccccccccccCcccccchhHhhhcCchhhhhHH
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef~~-----------GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll 341 (558)
++++++.++++ +++.+|||+|++.||.. ||||||+ |+|+.++.... ..+++++++.+.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999884 45689999999999987 9999998 88886554322 2345566777777
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 342 ~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
...++ +++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 77766 5789999999999999999999999999999999999999963
No 13
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.74 E-value=7.5e-18 Score=142.72 Aligned_cols=93 Identities=27% Similarity=0.387 Sum_probs=80.8
Q ss_pred CcCHHHHHHHHhCCCCcEEEEcCChhhHhh--CCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhh
Q 008662 272 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 272 ~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~--GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~L 349 (558)
.|+++++.++++++++.+|||||++.||.. +|||||+ |+|+.++......
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~~-------------------- 52 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLGD-------------------- 52 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHhh--------------------
Confidence 378999999886445689999999999999 9999999 8998765443221
Q ss_pred cccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 350 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 350 k~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
++++++|||||++|.|+..+++.|+..||++|++++||+.+|+
T Consensus 53 --~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 53 --LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred --cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 3689999999999999999999999999999999999999996
No 14
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.73 E-value=1.4e-17 Score=143.78 Aligned_cols=97 Identities=27% Similarity=0.382 Sum_probs=81.4
Q ss_pred CcCHHHHHHHHhCC-CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 272 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 272 ~ISp~Ea~elL~~~-~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
.|+++++.+++... .+.++||+|++.||..+|||||+ |+|+.++......+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~~------------------- 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKELD------------------- 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHhc-------------------
Confidence 47899999999653 36899999999999999999999 999876654332211
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
..+++++||+||++|.||..+++.|.+.||++|++|+||+.+|+.
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 014588999999999999999999999999999999999999975
No 15
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.5e-17 Score=157.53 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChh----hHhhC---------CCCCccccccccccccCc---ccccchhHhhhcCc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 334 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~----Ef~~G---------HIPGA~gai~~d~~nIPL---~eL~~~l~ell~~~ 334 (558)
..|+++|+.+++. +++.+|||||+++ ||..| |||||+ |+|. .++.....
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~~------ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAWQ------ 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCchh------
Confidence 5899999999995 4568999999876 46544 999998 6663 33322110
Q ss_pred hhhhhHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCe
Q 008662 335 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 400 (558)
Q Consensus 335 ~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV 400 (558)
..+.+.+.++++ .+++++||+||++|. +|..+++.|+.+||++|++|+|||.+|+.+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112233333333 268999999999997 8999999999999999999999999999999985
No 16
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.73 E-value=2.1e-17 Score=149.48 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=80.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchh-----------------HhhhcCch
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-----------------KKLLRGGR 335 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l-----------------~ell~~~~ 335 (558)
||++|+.+++. ++.+|||||++.||..||||||+ |+|+..+..+. ...++ ..
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 69 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELV-SG 69 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hh
Confidence 68999999985 47899999999999999999999 88885432211 00011 01
Q ss_pred hhhhHHHH---HHHhhhcccCCCceEEEEeC-CCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 336 ELDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 336 ~L~~ll~a---aGI~~Lk~~~kdk~IVVyC~-sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
.+++.+.+ .++ +++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 23333333 244 78999999997 68899999999999999 69999999999975
No 17
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.72 E-value=1.3e-17 Score=143.87 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=78.4
Q ss_pred cCHHHHHHHHhCC-CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccc---hhHhhhcCchhhhhHHHHHHHhh
Q 008662 273 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 273 ISp~Ea~elL~~~-~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~---~l~ell~~~~~L~~ll~aaGI~~ 348 (558)
||++++.+++.++ ++.+|||||++.||..||||||+ |+|+.++.. .+.. ++....+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~---------- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLE---------- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHH----------
Confidence 6899999999643 36799999999999999999999 888765431 1111 11111111
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 349 Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
..++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 62 ---~~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 ---NYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ---hhcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 1247899999999999999999999999999999999999996
No 18
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.71 E-value=2e-17 Score=141.51 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=79.8
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhH-hhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcc
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef-~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~ 351 (558)
|+++++.++++ +++.+|||+|++.+| ..||||||+ |+|+..+...... .. .+...+
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~-----~~---~~~~~~------ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADP-----DS---PYHKPA------ 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCc-----cc---cccccC------
Confidence 57899999885 357899999999998 569999998 8887554322110 00 000011
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 008662 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 397 (558)
Q Consensus 352 ~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAG 397 (558)
++++++|||||++|.|+..+++.|+.+||++|+.|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3678999999999999999999999999999999999999998765
No 19
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.71 E-value=2.1e-17 Score=137.52 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=76.4
Q ss_pred CCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCC
Q 008662 285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 364 (558)
Q Consensus 285 ~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~s 364 (558)
+++.+|||+|++.||..+|||||+ |+|+..+....... . ...+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~-~-~~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGEL-D-ILEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCc-C-HHHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999998 88876554322110 0 001122222222 3688999999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecchHHHHHHcCCC
Q 008662 365 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 399 (558)
Q Consensus 365 G~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLP 399 (558)
|.++..+++.|+.+||++|++|+||+.+|+..|.|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998865
No 20
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.71 E-value=2.7e-17 Score=141.34 Aligned_cols=108 Identities=29% Similarity=0.492 Sum_probs=80.0
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccC
Q 008662 274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 353 (558)
Q Consensus 274 Sp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~ 353 (558)
||+|+.+++ ++++.+|||+|++.+|..+|||||+ |+|...+... ........+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD--EPSLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS--SSBCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc--cccccccccccccccccc----ccc
Confidence 689999999 6689999999999999999999998 7777443100 000001112222222222 247
Q ss_pred CCceEEEEeCCCchHHHHHHH-----HHHccCCCEEEecchHHHHHHc
Q 008662 354 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 396 (558)
Q Consensus 354 kdk~IVVyC~sG~RS~~AA~~-----L~~~Gf~nVy~LdGG~~aWkaA 396 (558)
++++|||||..|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 888999999999999888877 8999999999999999999874
No 21
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.71 E-value=2.6e-17 Score=153.12 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=82.1
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCce
Q 008662 278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 357 (558)
Q Consensus 278 a~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~ 357 (558)
+.+++.++.+.+|||||++.+|+.+|||||+ ++|..++...+.+ .+++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~----------------------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEK----------------------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHh----------------------cCCCCC
Confidence 3455655556899999999999999999998 7876555443322 256789
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccCc
Q 008662 358 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 405 (558)
Q Consensus 358 IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~~ 405 (558)
|||||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|++...+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987544
No 22
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.71 E-value=2.8e-17 Score=139.15 Aligned_cols=89 Identities=22% Similarity=0.288 Sum_probs=77.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhccc
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 352 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~ 352 (558)
++|+++.+++. ++.++||+|++++|..+|||||+ |+|+.++...+.. +
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~~----------------------~ 48 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLNE----------------------L 48 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHHh----------------------c
Confidence 47889999883 57799999999999999999999 9998665443221 3
Q ss_pred CCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 353 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 353 ~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
+++++||+||++|.++..+++.|++.|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 5788999999999999999999999999 9999999999996
No 23
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.70 E-value=5.4e-17 Score=171.82 Aligned_cols=108 Identities=28% Similarity=0.385 Sum_probs=91.6
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
..|+++++.++++ ++.+|||||+++||..+|||||+ |+|+.++...+.++.
T Consensus 3 ~~is~~el~~~l~--~~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~~------------------- 53 (376)
T PRK08762 3 REISPAEARARAA--QGAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETHL------------------- 53 (376)
T ss_pred ceeCHHHHHHHHh--CCCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhhc-------------------
Confidence 4689999999985 35899999999999999999999 999866554333211
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccCccch
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETA 408 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~~~~~ 408 (558)
.+++++||+||++|.||..+++.|+++||++|++|+||+.+|++.|+|++.......
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~ 110 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTD 110 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCH
Confidence 257899999999999999999999999999999999999999999999987654333
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.70 E-value=5.3e-17 Score=146.33 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=80.2
Q ss_pred CCcCHHHHHHHHhCC-----CCcEEEEcCChhhHhhCCCCCccccccccccccCcc-cccchhHhhhcCchhhhhHHHHH
Q 008662 271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 271 g~ISp~Ea~elL~~~-----~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~-eL~~~l~ell~~~~~L~~ll~aa 344 (558)
..|+++++.+++.++ ++.+|||||++.||..||||||+ |+|+. ++.+.+.... .++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~----------~~~ 63 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKP----------GVA 63 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhh----------ccc
Confidence 368999999999643 46899999999999999999999 99975 3443221100 001
Q ss_pred HHhhhcccCCCceEEEEeC-CCchHHHHHHHHHHc------------cCCCEEEecchHHHHH
Q 008662 345 VIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 394 (558)
Q Consensus 345 GI~~Lk~~~kdk~IVVyC~-sG~RS~~AA~~L~~~------------Gf~nVy~LdGG~~aWk 394 (558)
+ .+++++|||||. +|.||..+++.|+.+ ||++||+|+|||.+|.
T Consensus 64 ~------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 64 S------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred c------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 1 368999999997 999999999999985 9999999999999984
No 25
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.69 E-value=4.3e-17 Score=165.96 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=99.7
Q ss_pred CcCHHHHHHHHhCCCCcEEEEcCC----------hhhHhhCCCCCccccccccccccCcccccc---hhHhhhcCchhhh
Q 008662 272 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 338 (558)
Q Consensus 272 ~ISp~Ea~elL~~~~~avLIDVRs----------~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~---~l~ell~~~~~L~ 338 (558)
.++++++.+++. +++.+|||+|+ +.+|+.||||||+ |+|+..+.. .+..++++++.++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 589999999984 56799999996 7899999999998 777654432 2234566778889
Q ss_pred hHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccCc
Q 008662 339 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 405 (558)
Q Consensus 339 ~ll~aaGI~~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~~ 405 (558)
+.+.++|| +++++||+||.+|. .+..+++.|+.+||++|++|+||+.+|+++|+|+++..+
T Consensus 77 ~~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 99999998 68999999999877 467788999999999999999999999999999987643
No 26
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.5e-17 Score=139.90 Aligned_cols=94 Identities=32% Similarity=0.508 Sum_probs=80.9
Q ss_pred HHhCCCCcEEEEcCChhhHhhCCCCC-ccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEE
Q 008662 281 LLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVI 359 (558)
Q Consensus 281 lL~~~~~avLIDVRs~~Ef~~GHIPG-A~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IV 359 (558)
.+...++.+|||||++.||..+|||+ +. |+|+.++........ .+++++||
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~iv 65 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPIV 65 (110)
T ss_pred HhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeEE
Confidence 33345689999999999999999999 88 999988765433210 26799999
Q ss_pred EEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeec
Q 008662 360 VMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 360 VyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~ 402 (558)
|||++|.||..+++.|+.+||++++++.||+.+|...++|++.
T Consensus 66 v~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 66 VYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 9999999999999999999999889999999999999999875
No 27
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.69 E-value=7e-17 Score=164.40 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCCcEEEEcCChhhHh-----------hCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHH
Q 008662 276 KSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 276 ~Ea~elL~~~~~avLIDVRs~~Ef~-----------~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aa 344 (558)
+++...+. .++.+|||+|+++||. .||||||+ |+|+.++... ..+++++++++.+.+.
T Consensus 158 ~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~~~~ 226 (281)
T PRK11493 158 TDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIFFGR 226 (281)
T ss_pred HHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHHHhc
Confidence 34444442 3468999999999994 69999999 8887665432 2355677888888888
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCeecc
Q 008662 345 VIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 345 GI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka-AGLPV~~~ 403 (558)
|+ +++++||+||++|.||..++..|+.+||++|++|+|||.+|.. +++|++.+
T Consensus 227 g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 227 GV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred CC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 88 5788999999999999999999999999999999999999998 79999864
No 28
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=4.7e-17 Score=148.49 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=91.0
Q ss_pred CCCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhh
Q 008662 269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 348 (558)
Q Consensus 269 ~~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~ 348 (558)
....++.++++++++ .++.+|||||+|+||.+||||.++ |||+..-... ..+++++++.+ .|..
T Consensus 21 ~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~~- 84 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGSS- 84 (136)
T ss_pred CcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hccc-
Confidence 345789999999995 466999999999999999999998 9998432221 12344444432 2321
Q ss_pred hcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCee
Q 008662 349 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 401 (558)
Q Consensus 349 Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~ 401 (558)
..+.|+.|||+|++|.||..|...|..+||+||.++.|||.+|.+.++|..
T Consensus 85 --kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 85 --KPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred --CCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 125677999999999999999999999999999999999999999998764
No 29
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.68 E-value=1.2e-16 Score=165.97 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=95.8
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhH-----------hhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHH
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef-----------~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll 341 (558)
++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+..+.+.- ..+++++++++.+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~~~~~~~-~~~~~~~el~~~~ 261 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFPQMLDSS-QTLLPAEELKKRF 261 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHHHhcCCC-CCCCCHHHHHHHH
Confidence 45677777764 456889999999998 569999999 88886654332 3467788899999
Q ss_pred HHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCeecc
Q 008662 342 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 342 ~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka-AGLPV~~~ 403 (558)
.++|+ +++++||+||++|.|+..++..|+.+||++|++|+|||..|.. ..+|+++.
T Consensus 262 ~~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 262 EQEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred HhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 88888 6789999999999999999999999999999999999999988 46887753
No 30
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.68 E-value=1e-16 Score=166.61 Aligned_cols=119 Identities=17% Similarity=0.292 Sum_probs=99.8
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcC--------C-hhhHhhCCCCCccccccccccccCcccccch---hHhhhcCchhhh
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELD 338 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVR--------s-~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~---l~ell~~~~~L~ 338 (558)
..|+++++.+++. +++.+|||+| + .++|..||||||+ ++|+.++... ...++++++.|+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 4799999999995 4678999996 3 3789999999998 7776554432 345677778899
Q ss_pred hHHHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccC
Q 008662 339 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 404 (558)
Q Consensus 339 ~ll~aaGI~~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~ 404 (558)
+.+.++|| .++++|||||..|. .+.++++.|+.+||++|++|+||+.+|+++|+|+++..
T Consensus 93 ~~l~~~Gi------~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 93 AAVSALGI------ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHHcCC------CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999998 57889999999886 56788899999999999999999999999999998753
No 31
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.67 E-value=9.5e-17 Score=137.04 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeC
Q 008662 284 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 363 (558)
Q Consensus 284 ~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~ 363 (558)
++++++|||||++.||..+|||||+ |+|+.++....... + .+++++||+||+
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~~---------------~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWVR---------------I-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHhh---------------C-----CCCCCeEEEEeC
Confidence 4567899999999999999999999 89976543211110 1 135889999999
Q ss_pred CCch--HHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 364 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 364 sG~R--S~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
+|.| |..+++.|+++||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9987 6899999999999999999999999974
No 32
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.67 E-value=8.1e-17 Score=143.74 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=81.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHh-hCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcc
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef~-~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~ 351 (558)
||++++.++++++++.++||||++.||+ .+|||||+ |+|+.++.... ++.. +...+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~-~~~~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPN-FLAELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHH-HHHHHHhh-------
Confidence 6899999999755678999999999999 99999998 88876554211 0001 11111111
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 352 ~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
.+++++||+||++|.||..+++.|+++||++++.+.|||++|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 25789999999999999999999999999999999999999976
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.67 E-value=1.5e-16 Score=136.12 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=70.3
Q ss_pred CCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCC
Q 008662 285 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 364 (558)
Q Consensus 285 ~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~s 364 (558)
+++.+|||||++.||..+|||||+ |+|+.++...... +..++. .+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~~-----------~~~~~~-----~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQE-----------LQALEA-----PGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHHH-----------HHHhhc-----CCCCCCEEEEeCC
Confidence 457899999999999999999998 8887554322211 111111 3678999999999
Q ss_pred CchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 365 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 365 G~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
|.++..+++.|+..||++|++|+||+.+|++
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.67 E-value=1.5e-16 Score=146.74 Aligned_cols=108 Identities=23% Similarity=0.255 Sum_probs=89.6
Q ss_pred cCHHHHHHHHhC---CCCcEEEEcCCh--------hhHhh------------CCCCCccccccccccccCccccc---ch
Q 008662 273 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVG---GS 326 (558)
Q Consensus 273 ISp~Ea~elL~~---~~~avLIDVRs~--------~Ef~~------------GHIPGA~gai~~d~~nIPL~eL~---~~ 326 (558)
+|++++.+.+.. +++.+|||+|.. ++|.. ||||||+ ++|+.++. ..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899998852 467899999987 89988 9999998 77764432 22
Q ss_pred hHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCC---CchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 327 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 327 l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~s---G~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
...++++++++++.+.++|| .++++||+||.. |.++.++++.|+.+||++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI------~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGI------DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCC------CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 23456666789999999998 578999999986 779999999999999999999999999996
No 35
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.66 E-value=2.3e-16 Score=176.78 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=100.8
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCccccc---chhHhhhcCchhhhhHHHHHHHh
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 347 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~---~~l~ell~~~~~L~~ll~aaGI~ 347 (558)
..|+++++.+++. +++.+|||+|++++|..||||||+ ++|+.... .....++++++++++.+.++||
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI- 78 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGH- 78 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 4699999999995 567999999999999999999998 66653221 1123456777889999999998
Q ss_pred hhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccC
Q 008662 348 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 404 (558)
Q Consensus 348 ~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~ 404 (558)
+++++|||||+.|. ++.+++|.|+.+||++|++|+||+.+|+.+|+|+++..
T Consensus 79 -----~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~ 131 (610)
T PRK09629 79 -----NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV 131 (610)
T ss_pred -----CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence 68999999999874 88899999999999999999999999999999998754
No 36
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.65 E-value=3.2e-16 Score=138.20 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=80.2
Q ss_pred CCcCHHHHHHHHhCC-CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhh
Q 008662 271 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 349 (558)
Q Consensus 271 g~ISp~Ea~elL~~~-~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~L 349 (558)
..|+++++.+++..+ ++.+|||||++ ||..+|||||+ |+|+.++...+.++. ...++
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~~----------~~~~~--- 59 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQLV----------QLLSG--- 59 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHHH----------HHHhc---
Confidence 468999999998643 45789999999 99999999999 999877655443321 11222
Q ss_pred cccCCCceEEEEeC-CCchHHHHHHHHHH--------ccCCCEEEecchHHHHHHc
Q 008662 350 KIVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 396 (558)
Q Consensus 350 k~~~kdk~IVVyC~-sG~RS~~AA~~L~~--------~Gf~nVy~LdGG~~aWkaA 396 (558)
+++++|||||. +|.|+..+++.|.+ .||++|++|+||+.+|++.
T Consensus 60 ---~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 ---SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred ---CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 56789999998 67899999988754 4999999999999999874
No 37
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.5e-16 Score=159.71 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=121.0
Q ss_pred HHHHHHHHhcCCCCCCCcchhhhhhhhHHHHHH--HHHHHHhCCC-----------------------------------
Q 008662 227 VAIEGLERSLGFDPNDPIVPFVVFLGTSATLWI--FYWWWTYGGY----------------------------------- 269 (558)
Q Consensus 227 ~g~~gvdkrigf~~~~PVla~aI~~g~t~~L~l--~y~~~~~~G~----------------------------------- 269 (558)
..++.+...+|+..+++|++ ++....+.. +||.+++.|.
T Consensus 76 e~fa~~~~~~GI~~d~tVVv----Ydd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~ 151 (285)
T COG2897 76 EQFAKLLGELGIRNDDTVVV----YDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAK 151 (285)
T ss_pred HHHHHHHHHcCCCCCCEEEE----ECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCcccccc
Confidence 35677888999999999964 332222222 5565444322
Q ss_pred ---CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhh----------CCCCCccccccccccccCcccccchhHhhhcCchh
Q 008662 270 ---SGDLSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRE 336 (558)
Q Consensus 270 ---~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~----------GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~ 336 (558)
....+..+....+ +....+|||+|+++||.. ||||||+ |+|..++.+ -..+++.+++
T Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~ 221 (285)
T COG2897 152 YNVKAVVDATLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEE 221 (285)
T ss_pred CCccccCCHHHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHH
Confidence 0124455566666 346788999999999987 9999999 999987766 3456777778
Q ss_pred hhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCeecc
Q 008662 337 LDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 337 L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka-AGLPV~~~ 403 (558)
++.++...|| +++++||+||++|.||...+..|+.+|+.++.+|+|+|..|.+ .+.|++++
T Consensus 222 ~~~l~~~~gi------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 222 IARLYADAGI------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred HHHHHHhcCC------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 8888888888 6899999999999999999999999999888999999999998 56688764
No 38
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.62 E-value=1.4e-15 Score=170.38 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=96.0
Q ss_pred cCHHHHHHHHhCCCCcEEEEcCChhhHh--------hCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHH
Q 008662 273 LSPKSTLELLRGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 273 ISp~Ea~elL~~~~~avLIDVRs~~Ef~--------~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aa 344 (558)
++.+++.+.+. +++.+|||+|+++||. .||||||+ |+|+.++.+.. ..+++++++++++..+
T Consensus 149 v~~e~v~~~l~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~ 218 (610)
T PRK09629 149 ATREYLQSRLG-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDL 218 (610)
T ss_pred ccHHHHHHhhC-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHc
Confidence 56778888774 4678899999999994 69999999 88875443221 2356677888889888
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH-cCCCeecc
Q 008662 345 VIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 403 (558)
Q Consensus 345 GI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka-AGLPV~~~ 403 (558)
|+ +++++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++.
T Consensus 219 Gi------~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 219 GI------TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CC------CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 88 5889999999999999999999999999999999999999988 57898763
No 39
>PRK01415 hypothetical protein; Validated
Probab=99.62 E-value=1.5e-15 Score=153.13 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=85.0
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
..|+|+++.++++ ++++++||||++.||..||||||+ |+|+..+++....... ..
T Consensus 112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~~~----------------~~ 166 (247)
T PRK01415 112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWVQQ----------------NQ 166 (247)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHHhh----------------hh
Confidence 4699999999995 578999999999999999999999 9998766542111100 01
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 397 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAG 397 (558)
..+++++|++||.+|.||..++..|+++||++||.|.||+.+|.+..
T Consensus 167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 13689999999999999999999999999999999999999999754
No 40
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.60 E-value=1.7e-15 Score=133.25 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=69.5
Q ss_pred CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCC
Q 008662 286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 365 (558)
Q Consensus 286 ~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG 365 (558)
....+||+|+++||..+|||||+ |+|+.++...+.++. .+++++||+||.+|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 35689999999999999999999 999877655444321 25678999999999
Q ss_pred chHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 366 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 366 ~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
.||..++..|+++||++++++ ||+.+|.-
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999985 99999975
No 41
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.60 E-value=1.6e-15 Score=125.04 Aligned_cols=88 Identities=30% Similarity=0.443 Sum_probs=72.5
Q ss_pred HHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCce
Q 008662 278 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 357 (558)
Q Consensus 278 a~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~ 357 (558)
+.+++. .++.++||+|++.||..+|||||+ ++|...+..... .. ..+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~~--------------~~------~~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERAA--------------LL------ELDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHHH--------------hh------ccCCCCe
Confidence 344553 568899999999999999999998 888765443210 01 1368999
Q ss_pred EEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHH
Q 008662 358 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 394 (558)
Q Consensus 358 IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWk 394 (558)
|||||..|.++..+++.|+..||+++++|+||+.+|+
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999994
No 42
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.59 E-value=3.1e-15 Score=151.61 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=83.8
Q ss_pred CCCcCHHHHHHHHhCC-----CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHH
Q 008662 270 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~-----~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aa 344 (558)
...++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.+...++.. .
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l~~-----------~ 169 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEALAA-----------H 169 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHHHh-----------h
Confidence 3579999999988642 34799999999999999999999 9999776543222110 0
Q ss_pred HHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHc
Q 008662 345 VIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 396 (558)
Q Consensus 345 GI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaA 396 (558)
....++++||+||++|.|+..|++.|++.||++|++|.||+.+|.+.
T Consensus 170 -----~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 170 -----RADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred -----hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 00126899999999999999999999999999999999999999873
No 43
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.59 E-value=3.4e-15 Score=131.86 Aligned_cols=99 Identities=17% Similarity=0.289 Sum_probs=76.0
Q ss_pred CCcCHHHHHHHHhCC-----CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHH
Q 008662 271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 345 (558)
Q Consensus 271 g~ISp~Ea~elL~~~-----~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaG 345 (558)
..|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+.++...+.++++ ...
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~~----------~~~ 62 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVYA----------LFS 62 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHHH----------Hhh
Confidence 468999999999654 46899999999 99999999999 9998776654433221 111
Q ss_pred HhhhcccCCCceEEEEeCC-CchHHHHHHHHHH----ccC--CCEEEecchHHHHH
Q 008662 346 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRK----LGV--MRAFLVQGGFQSWV 394 (558)
Q Consensus 346 I~~Lk~~~kdk~IVVyC~s-G~RS~~AA~~L~~----~Gf--~nVy~LdGG~~aWk 394 (558)
..+.++||+||.+ |.||..+++.|.. .|| .++++|+||+.+|.
T Consensus 63 ------~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 63 ------LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 1356799999997 5798888866543 475 78999999999996
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.9e-15 Score=152.15 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=99.5
Q ss_pred CCcCHHHHHHHHhCCC-----CcEEEEcCCh--hhHhhCCCCCccccccccccccCccccc-ch--hHhhhcCchhhhhH
Q 008662 271 GDLSPKSTLELLRGKE-----NAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVG-GS--VKKLLRGGRELDDT 340 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~-----~avLIDVRs~--~Ef~~GHIPGA~gai~~d~~nIPL~eL~-~~--l~ell~~~~~L~~l 340 (558)
-.|+++++.+.+. ++ ++.+++++.. .+|..+|||||+ .+++.... .. +.++++++++++++
T Consensus 11 ~lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 3689999999884 23 6677777665 899999999887 44543322 22 36789999999999
Q ss_pred HHHHHHhhhcccCCCceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccCcc
Q 008662 341 LTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 406 (558)
Q Consensus 341 l~aaGI~~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~~~ 406 (558)
++++|| .+|++||+|+..+. .+.+++|.|+.+|+++|++|+||+.+|+++|+|++...+.
T Consensus 82 ~~~~GI------~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~ 142 (285)
T COG2897 82 LGELGI------RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE 142 (285)
T ss_pred HHHcCC------CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence 999999 58999999997655 8999999999999999999999999999999999975543
No 45
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.57 E-value=7.6e-15 Score=156.64 Aligned_cols=177 Identities=19% Similarity=0.249 Sum_probs=121.4
Q ss_pred CCCccCCChhHH--HhhhhhhhhcceeeccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhh-hHHHH---HH---
Q 008662 189 GTTKESLPPEIR--DALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLG-TSATL---WI--- 259 (558)
Q Consensus 189 g~~~~~l~p~ik--~~~~~~~~~~k~i~~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g-~t~~L---~l--- 259 (558)
|+|..|++|+.. .....|.+.+ |++|+-.++| . +++.+.+.-.+|+.. |..--.+.+. ....+ .+
T Consensus 184 ~~c~~c~~~~~~~~~~~~~~~~~g--v~g~~~~~~g-~-~~a~e~ik~l~g~~~--~~~~~l~~~d~~~~~~~~~~~~~~ 257 (392)
T PRK07878 184 GLNYRDLYPEPPPPGMVPSCAEGG--VLGVLCASIG-S-IMGTEAIKLITGIGE--PLLGRLMVYDALEMTYRTIKIRKD 257 (392)
T ss_pred CCeeeeecCCCCCccCCCCCccCC--ccchHHHHHH-H-HHHHHHHHHHhCCCC--CCcCcEEEEECCCCceeeEeeccC
Confidence 568888876532 2456788877 7888888888 3 667777777777421 1111001111 00000 00
Q ss_pred ----------HHHHH-H-------hCCCCCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcc
Q 008662 260 ----------FYWWW-T-------YGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP 321 (558)
Q Consensus 260 ----------~y~~~-~-------~~G~~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~ 321 (558)
.|-.+ . .......|+++|+.+++++.++.+|||||+++||+.+|||||+ |+|+.
T Consensus 258 ~~C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~ 329 (392)
T PRK07878 258 PSTPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKS 329 (392)
T ss_pred CCCCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChH
Confidence 00000 0 0011246899999999865556799999999999999999999 99987
Q ss_pred cccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCC
Q 008662 322 EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 399 (558)
Q Consensus 322 eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLP 399 (558)
++.... . +..++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 330 ~l~~~~-~-------------------~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 330 EILSGE-A-------------------LAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred Hhcchh-H-------------------HhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 654310 0 011368899999999999999999999999999999999999999987654
No 46
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.57 E-value=6e-15 Score=130.55 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=68.2
Q ss_pred CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCC
Q 008662 286 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 365 (558)
Q Consensus 286 ~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG 365 (558)
.+-+|||+|+++||+.+|||||+ |+|+.++...+..+ + .+++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~l--------------~------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIATA--------------V------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHhc--------------C------CCCCCeEEEEeCCC
Confidence 34589999999999999999999 99987655443322 1 14678999999999
Q ss_pred chHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 366 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 366 ~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
.||..+++.|.++||++|++ .||+.+|.-
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 47
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.55 E-value=1.4e-14 Score=150.79 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=84.3
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
..++++++.+++. +++.+|||||++.||+.||||||+ |+|+.++.+....+. ..++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l~----------~~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWVE----------ENLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHHH----------HhcC-----
Confidence 4799999999985 567899999999999999999999 999877654322210 0011
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHc
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 396 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaA 396 (558)
..++++||+||.+|.|+..++..|+++||++|++|+||+.+|...
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 257899999999999999999999999999999999999999873
No 48
>PRK07411 hypothetical protein; Validated
Probab=99.52 E-value=3.8e-14 Score=151.36 Aligned_cols=180 Identities=20% Similarity=0.227 Sum_probs=120.9
Q ss_pred CCCccCCChhHH--HhhhhhhhhcceeeccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhhh-HHH---HHH---
Q 008662 189 GTTKESLPPEIR--DALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGT-SAT---LWI--- 259 (558)
Q Consensus 189 g~~~~~l~p~ik--~~~~~~~~~~k~i~~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g~-t~~---L~l--- 259 (558)
++|..|++|+.. ..+..|.+.+ |++++-.+.| .+++.+.+.-.+|+.. +..--...+.+ ... +.+
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~~g--vlg~~~~~~g--~~~a~eaik~l~g~~~--~l~~~l~~~d~~~~~~~~~~~~~~ 249 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAEGG--VLGILPGIIG--VIQATETIKIILGAGN--TLSGRLLLYNALDMKFRELKLRPN 249 (390)
T ss_pred CCChHHhcCCCCCcccCCCCccCC--cCcchHHHHH--HHHHHHHHHHHcCCCC--CCCCeEEEEECCCCceeEEeccCC
Confidence 579999987643 2456788888 8888888888 3667777776666421 11000001100 000 000
Q ss_pred -------HH-HHHHh-------------CCCCCCcCHHHHHHHHhCCC-CcEEEEcCChhhHhhCCCCCccccccccccc
Q 008662 260 -------FY-WWWTY-------------GGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYAS 317 (558)
Q Consensus 260 -------~y-~~~~~-------------~G~~g~ISp~Ea~elL~~~~-~avLIDVRs~~Ef~~GHIPGA~gai~~d~~n 317 (558)
.+ -.+.+ ......|+++|+.++++... +.+|||||++.||+.+|||||+ |
T Consensus 250 ~~c~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------n 321 (390)
T PRK07411 250 PERPVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------L 321 (390)
T ss_pred CCCCccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------E
Confidence 00 00000 12235799999999986433 5799999999999999999999 9
Q ss_pred cCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHcC
Q 008662 318 VYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 397 (558)
Q Consensus 318 IPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAG 397 (558)
+|+.++..... .+. ++..+++++||+||++|.||..+++.|+++||+ ++.+.||+.+|++..
T Consensus 322 iP~~~l~~~~~-----~~~------------l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~~~ 383 (390)
T PRK07411 322 VPLPDIENGPG-----VEK------------VKELLNGHRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSREV 383 (390)
T ss_pred ccHHHhhcccc-----hHH------------HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHHhc
Confidence 99876643210 001 111357899999999999999999999999997 468999999999876
Q ss_pred CCe
Q 008662 398 LRI 400 (558)
Q Consensus 398 LPV 400 (558)
.|.
T Consensus 384 ~p~ 386 (390)
T PRK07411 384 DPS 386 (390)
T ss_pred CCC
Confidence 654
No 49
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.46 E-value=2.3e-13 Score=143.40 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=79.8
Q ss_pred CHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccch-----------------hHhhhcCchh
Q 008662 274 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-----------------VKKLLRGGRE 336 (558)
Q Consensus 274 Sp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~-----------------l~ell~~~~~ 336 (558)
...++.+++. ++.+|||||+|.||..||||||+ |+|+.+..++ ++..+.++ .
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~-~ 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAG-N 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcch-h
Confidence 4567777663 57899999999999999999999 9998432211 11111111 1
Q ss_pred hhhHHHHHHHhhhcccC-CCceEEEEe-CCCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeec
Q 008662 337 LDDTLTAAVIRNLKIVQ-DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 337 L~~ll~aaGI~~Lk~~~-kdk~IVVyC-~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~ 402 (558)
+.+.+.+. +...+ ++++||+|| ++|.||..+++.|..+|| +|++|+|||.+|++.+++...
T Consensus 73 l~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 73 IAAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 11111111 11123 788999999 578999999999999999 699999999999998875544
No 50
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.45 E-value=4.8e-13 Score=121.09 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=75.8
Q ss_pred CcCHHHHHHHHhCC-CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchh-H-------hhhcCchhhhhHHH
Q 008662 272 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-K-------KLLRGGRELDDTLT 342 (558)
Q Consensus 272 ~ISp~Ea~elL~~~-~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l-~-------ell~~~~~L~~ll~ 342 (558)
.|+|+++.++++.+ ++.+|||+|++.+|..+|||||+ ++|+..+..+. . .++.+++..+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 68 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDRD---- 68 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHHH----
Confidence 48999999999653 57899999999999999999998 88876432110 0 0111111111
Q ss_pred HHHHhhhcccCCCceEEEEeCCCch---------HHHHHHHHHH--ccCCCEEEecchHHHHHH
Q 008662 343 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 343 aaGI~~Lk~~~kdk~IVVyC~sG~R---------S~~AA~~L~~--~Gf~nVy~LdGG~~aWka 395 (558)
. + .. .++++|||||..+.+ ++.+++.|.. .|+.+|++|+|||.+|++
T Consensus 69 ~--l---~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 69 R--L---RR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred H--H---hc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 1 1 11 257899999998875 6677777777 477899999999999976
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.44 E-value=1.8e-13 Score=144.45 Aligned_cols=171 Identities=22% Similarity=0.293 Sum_probs=113.5
Q ss_pred CCCccCCChhHHH--hhhhhhhhcceeeccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhhh-HHH---HHH---
Q 008662 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGT-SAT---LWI--- 259 (558)
Q Consensus 189 g~~~~~l~p~ik~--~~~~~~~~~k~i~~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g~-t~~---L~l--- 259 (558)
++|..|++|+... ....|.+.+ |++|+-.+.| . +++.|.+.-..|+. +|..--.+.+.. ... +.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~~g--v~g~~~~~~g-~-~~a~e~ik~l~g~~--~~l~~~l~~~d~~~~~~~~~~~~~~ 239 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQAG--VLGPVVGVVG-S-AMAMEALKLITGVG--TPLIGKLGYYDSLDGTWEYIPVVGN 239 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccccC--cchhHHHHHH-H-HHHHHHHHHHhCCC--CcCcCeEEEEECCCCeEEEEeccCC
Confidence 3578888776432 345677777 7788888888 3 66777777777642 121111111111 000 000
Q ss_pred --H-----HH-HH-Hh-CCCCCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHh
Q 008662 260 --F-----YW-WW-TY-GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKK 329 (558)
Q Consensus 260 --~-----y~-~~-~~-~G~~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~e 329 (558)
+ |. +. .. .+....++++++.++. ++.+|||||+++||+.+|||||+ |+|+.++......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~~ 308 (355)
T PRK05597 240 PAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGANP 308 (355)
T ss_pred CCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcccc
Confidence 0 00 00 00 0122357777777543 46799999999999999999999 9998765442211
Q ss_pred hhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHHc
Q 008662 330 LLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 396 (558)
Q Consensus 330 ll~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaA 396 (558)
. ..+++++||+||++|.||..+++.|+++||++|++|+||+.+|+++
T Consensus 309 ~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 309 P--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred c--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 0 0257889999999999999999999999999999999999999763
No 52
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.44 E-value=6.8e-14 Score=145.21 Aligned_cols=182 Identities=21% Similarity=0.226 Sum_probs=134.2
Q ss_pred eEccCCCccCCChhHHH--hhhhhhhhcceeeccccchhhHHHHHHHHHHHHhcCCC-CCCCcchhhhhhhhHHHHH---
Q 008662 185 VYYYGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFD-PNDPIVPFVVFLGTSATLW--- 258 (558)
Q Consensus 185 ~y~pg~~~~~l~p~ik~--~~~~~~~~~k~i~~~~G~ilgaQv~~g~~gvdkrigf~-~~~PVla~aI~~g~t~~L~--- 258 (558)
.|--|+|++||||++++ .+..|.|.+ |++|+-+.+| . ++|+|.+.-..++. +-+|-+. ++.|....+.
T Consensus 200 ny~~GPCYRClFP~Ppp~~~vt~C~dgG--VlGpv~GviG-~-mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r~ir 273 (427)
T KOG2017|consen 200 NYNNGPCYRCLFPNPPPPEAVTNCADGG--VLGPVTGVIG-C-MQALETIKLIAGIGESLSGRLL--LFDGLSGHFRTIR 273 (427)
T ss_pred ecCCCceeeecCCCCcChHHhcccccCc--eeecchhhhh-H-HHHHHHHHHHHccCccCCcceE--EEecccceeEEEE
Confidence 34568999999999999 999999999 8899999999 4 88999888877753 2223322 2333333210
Q ss_pred --------------------HHHHH-----------HHhCCCCCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCc
Q 008662 259 --------------------IFYWW-----------WTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL 307 (558)
Q Consensus 259 --------------------l~y~~-----------~~~~G~~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA 307 (558)
.-|-+ .+.-.-..+||..|+++++++.+..+|||||++.||+..|+|+|
T Consensus 274 lR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~a 353 (427)
T KOG2017|consen 274 LRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEA 353 (427)
T ss_pred eccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccc
Confidence 01111 01111134789999999998778899999999999999999999
Q ss_pred cccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCC-CEEEe
Q 008662 308 RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-RAFLV 386 (558)
Q Consensus 308 ~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~-nVy~L 386 (558)
+ |||+.+++.+..+... | +......+|+|+|+.|+.|+.|+|.|++..++ +|+.+
T Consensus 354 v--------NIPL~~l~~~~~~~~~------------~----~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDv 409 (427)
T KOG2017|consen 354 V--------NIPLKELRSRSGKKLQ------------G----DLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDV 409 (427)
T ss_pred c--------ccchhhhhhhhhhhhc------------c----cccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhh
Confidence 9 9999888766542110 0 00135678999999999999999999976654 67789
Q ss_pred cchHHHHHHc
Q 008662 387 QGGFQSWVKE 396 (558)
Q Consensus 387 dGG~~aWkaA 396 (558)
.||+.+|...
T Consensus 410 igGl~~w~~~ 419 (427)
T KOG2017|consen 410 IGGLKAWAAK 419 (427)
T ss_pred hhHHHHHHHh
Confidence 9999999874
No 53
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.44 E-value=2e-13 Score=141.94 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=72.8
Q ss_pred CcEEEEcCChhhHhhCCCCCccccccccccccCcccccch--hHhhhcCch----------hhhhHHHHHHHhhh-cccC
Q 008662 287 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGGR----------ELDDTLTAAVIRNL-KIVQ 353 (558)
Q Consensus 287 ~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~--l~ell~~~~----------~L~~ll~aaGI~~L-k~~~ 353 (558)
+.+|||||+|.||..||||||+ |+|+.+..++ .....+... .+...+.. .+..+ +..+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~-~i~~~~~~~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAA-HVEQWRAFAD 72 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHH-HHHHHHhhcC
Confidence 4689999999999999999999 9998432211 111111000 00001111 11111 1124
Q ss_pred CCceEEEEeC-CCchHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeecc
Q 008662 354 DRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 403 (558)
Q Consensus 354 kdk~IVVyC~-sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~ 403 (558)
++++||+||. +|.||..+++.|+.+|| +|++++||+.+|+..+++....
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 5556999994 78999999999999999 7999999999999999877653
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.38 E-value=5.9e-13 Score=141.43 Aligned_cols=170 Identities=18% Similarity=0.214 Sum_probs=110.7
Q ss_pred CCCccCCChhHHH--hhhhhhhhcceeeccccchhhHHHHHHHHHHHHhcCCCC--CCCcchhhhhhhhHHHHHHHHHH-
Q 008662 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWW- 263 (558)
Q Consensus 189 g~~~~~l~p~ik~--~~~~~~~~~k~i~~~~G~ilgaQv~~g~~gvdkrigf~~--~~PVla~aI~~g~t~~L~l~y~~- 263 (558)
++|..|++|+... .+..|.+.+ |+.|+-.+.| . +.+.+.+.-..|+.+ ...++. +-+.+..+...-+.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~~g--vlg~~~~~ig-~-~~a~eaik~l~g~g~~l~g~ll~---~d~~~~~~~~~~~~~ 254 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCATAG--VLGATTAVIG-A-LMATEAIKFLTGIGDVQPGTVLS---YDALTATTRSFRVGA 254 (370)
T ss_pred CCCcHhhCCCCCccccCCCCccCC--cchhHHHHHH-H-HHHHHHHHHHhCCCCCCcCcEEE---EECCCCEEEEEEecC
Confidence 4577888776432 344676666 7788888888 3 677788777777521 122221 11111110000000
Q ss_pred -------HHhC-CC-CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCC---CccccccccccccCcccccchhHhhh
Q 008662 264 -------WTYG-GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKLL 331 (558)
Q Consensus 264 -------~~~~-G~-~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIP---GA~gai~~d~~nIPL~eL~~~l~ell 331 (558)
..+. .| ...++++++.+++.+ ++++|||||++.||+.+||| ||+ |+|+.++.+.....
T Consensus 255 ~~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~~- 324 (370)
T PRK05600 255 DPARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADIL- 324 (370)
T ss_pred CCCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhhh-
Confidence 0000 01 126899999999854 46799999999999999998 477 99998775421100
Q ss_pred cCchhhhhHHHHHHHhhhcccCCCceEEEEeCCCchHHHHHHHHHHccCCC-EEEecchHH
Q 008662 332 RGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 391 (558)
Q Consensus 332 ~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~n-Vy~LdGG~~ 391 (558)
.. +...+++ +|||||++|.||..+++.|+++||++ |++|.||+.
T Consensus 325 ---~~------------l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 325 ---HA------------LSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ---hh------------ccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 00 0112444 99999999999999999999999986 999999985
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.05 E-value=2.6e-10 Score=125.08 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=63.2
Q ss_pred CCcEEEEcCChhhHhhCCCCC----ccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEE
Q 008662 286 ENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 361 (558)
Q Consensus 286 ~~avLIDVRs~~Ef~~GHIPG----A~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVy 361 (558)
++++|||||+++||+.+|||| |+ |+|+.++...... .+++++||+|
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~----------------------l~~~~~iivy 455 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGD----------------------LDQSKTYLLY 455 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhh----------------------cCCCCeEEEE
Confidence 578999999999999999999 88 9998776543321 3678899999
Q ss_pred eCCCchHHHHHHHHHHccCCCEEEecc
Q 008662 362 DADGTRSKGIARSLRKLGVMRAFLVQG 388 (558)
Q Consensus 362 C~sG~RS~~AA~~L~~~Gf~nVy~LdG 388 (558)
|++|.||..++..|+.+||++|+++.+
T Consensus 456 C~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 456 CDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 999999999999999999999998753
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.03 E-value=6.8e-10 Score=113.47 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=98.9
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcC---------ChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHH
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 341 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVR---------s~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll 341 (558)
..++++.+.+++.+ ++.+|||.. ...||...|||||. +|+.+.+-. -....+.+++.++.+++-.
T Consensus 5 ~iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~--~s~~~~~~lp~~e~Fa~y~ 78 (286)
T KOG1529|consen 5 SIVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISY--PSSPYRHMLPTAEHFAEYA 78 (286)
T ss_pred cccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeecccccc--CCCcccccCccHHHHHHHH
Confidence 35788888888853 679999983 35678888999765 665554432 1234556777777888888
Q ss_pred HHHHHhhhcccCCCceEEEEeC--CCc-hHHHHHHHHHHccCCCEEEecchHHHHHHcCCCeeccCc
Q 008662 342 TAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 405 (558)
Q Consensus 342 ~aaGI~~Lk~~~kdk~IVVyC~--sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aWkaAGLPV~~~~~ 405 (558)
+.+|+ ++++.+|||++ .|+ .|.+++|+++..||++|+.|+||+.+|+++|+|+.+.+.
T Consensus 79 ~~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 79 SRLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred HhcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 88998 67889999999 787 889999999999999999999999999999999988664
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.90 E-value=1.4e-09 Score=111.85 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred CcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcc
Q 008662 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 351 (558)
Q Consensus 272 ~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~ 351 (558)
-|+|+++.+++. +++.++||+|..-||+-||..||+ +.+...|++...+...+. .
T Consensus 114 yl~p~~wn~~l~-D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~~~~----------------~ 168 (308)
T COG1054 114 YLSPKDWNELLS-DPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVEENL----------------D 168 (308)
T ss_pred ccCHHHHHHHhc-CCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHHHHH----------------H
Confidence 589999999995 688999999999999999999998 767666766544321110 1
Q ss_pred cCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 352 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 352 ~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
.-++++|+.||..|.|...+...|...||++||-|+||+-.|..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 23677999999999999999999999999999999999998866
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.52 E-value=3.5e-07 Score=93.89 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=79.3
Q ss_pred CCcEEEEcCChhhHh-----------hCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCC
Q 008662 286 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 354 (558)
Q Consensus 286 ~~avLIDVRs~~Ef~-----------~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~k 354 (558)
.+...+|.|...+|. .||||||+ |+|+.++-..-..+ +.++++..++...++ ..
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~-k~~edl~~~f~~~~l------~~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFI-KPAEDLKHLFAQKGL------KL 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhccccccc-CCHHHHHHHHHhcCc------cc
Confidence 458899999988883 47999999 99998776544333 336788888888888 35
Q ss_pred CceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHHHH
Q 008662 355 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 355 dk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
++|+|+-|..|..+...+-.|.+.| .+|.+|+|+|..|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 689999999999985
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=2.6e-07 Score=96.40 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCcCHHHHHHHHhCC-----CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHH
Q 008662 271 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 345 (558)
Q Consensus 271 g~ISp~Ea~elL~~~-----~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaG 345 (558)
+.||++.++.+++.. ...+|||+|-|-||..|||+||+ |++..+..+..-- .+ . +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f~-~~--~---------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFFL-LK--D---------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhhc-cc--c---------c
Confidence 689999999999641 13679999999999999999999 8876443322110 00 0 0
Q ss_pred HhhhcccCCCceEEEEeCCCc-hHHHHHHHHHH------------ccCCCEEEecchHHHHHHc
Q 008662 346 IRNLKIVQDRSKVIVMDADGT-RSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 396 (558)
Q Consensus 346 I~~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L~~------------~Gf~nVy~LdGG~~aWkaA 396 (558)
. +...+...+||||..-. |+..+|+.|+. +-|..+|+|+|||..|-..
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0 00123457899998654 99999999984 3456899999999999874
No 60
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.88 E-value=4.4e-06 Score=89.55 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=84.7
Q ss_pred hhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehhchhcccceeccCCceeeE
Q 008662 110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 186 (558)
....|.+|||.+|+|+.| ....+++........ ...+++|++|+.+++.|+++++ ......++..|
T Consensus 299 ~~~~A~~qg~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~----------~~~~~~~~~~~ 367 (444)
T PRK09564 299 LATTANKLGRMVGENLAG-RHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKT----------VFIKDKNHTNY 367 (444)
T ss_pred chHHHHHHHHHHHHHhcC-CCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEE----------EEEecCCCCCc
Confidence 566899999999999995 676788887776554 6799999999999999999888 32223456668
Q ss_pred ccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhHH
Q 008662 187 YYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 187 ~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g~t~ 255 (558)
++|..+.++ |+|+ +.+|++||+| ++|......+++ .++.+|..+.+.
T Consensus 368 ~~~~~~~~~---------------klv~~~~~~~ilG~~-~~g~~~~~~~i~------~~~~~i~~~~~~ 415 (444)
T PRK09564 368 YPGQEDLYV---------------KLIYEADTKVILGGQ-IIGKKGAVLRID------ALAVAIYAKLTT 415 (444)
T ss_pred CCCCceEEE---------------EEEEECCCCeEEeEE-EEcCccHHHHHH------HHHHHHHCCCCH
Confidence 899888888 9999 6799999999 666544444555 444444444443
No 61
>PRK07846 mycothione reductase; Reviewed
Probab=97.80 E-value=5.1e-06 Score=90.34 Aligned_cols=127 Identities=12% Similarity=0.007 Sum_probs=93.0
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccc--ccccccccccccc-eeccccchhhhhhhhccceeeeehh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~ 168 (558)
.|+-++|+..- .....-|++|||++++|++++.. ....+.+.+.+.. ...+++|++|+.+++.|++|++
T Consensus 294 ~IyA~GD~~~~-----~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~--- 365 (451)
T PRK07846 294 GVFALGDVSSP-----YQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITV--- 365 (451)
T ss_pred CEEEEeecCCC-----ccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEE---
Confidence 45666666531 12356799999999999995422 2234566776665 7799999999999999999887
Q ss_pred chhcccceeccCCceeeEc-cCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 169 TIVALEESMTNGASFVVYY-YGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~-pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
....-.++..|+ ++..+..+ |+|+ +.+|++||+| ++|- ....+++ .++
T Consensus 366 -------~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~~~~ilG~~-~~g~-~a~e~i~------~~~ 415 (451)
T PRK07846 366 -------KVQNYGDVAYGWAMEDTTGFV---------------KLIADRDTGRLLGAH-IIGP-QASTLIQ------PLI 415 (451)
T ss_pred -------EEEecCcchhhhhCCCCceEE---------------EEEEECCCCEEEEEE-EECC-CHHHHHH------HHH
Confidence 554445555544 78778877 9999 6799999999 7774 4577888 777
Q ss_pred hhhhhhhHHH
Q 008662 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~aI~~g~t~~ 256 (558)
++|..+.+..
T Consensus 416 ~ai~~~~t~~ 425 (451)
T PRK07846 416 QAMSFGLDAR 425 (451)
T ss_pred HHHHcCCCHH
Confidence 7777776664
No 62
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.73 E-value=7e-06 Score=88.81 Aligned_cols=127 Identities=8% Similarity=-0.010 Sum_probs=90.2
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccc-ccccccccc-eeccccchhhhhhhhcc-ceeeeehh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATV-AAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~~~~~-~t~astgl~e~~~~~~~-~~~~~~~~ 168 (558)
.|+-++|+... ...+..|++|||++++|++|+....++ +++.+.+.. ...+++|++|+.+++.+ ++|.+.
T Consensus 295 ~IyA~GD~~~~-----~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~-- 367 (446)
T TIGR01424 295 SIYAVGDVTDR-----INLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVY-- 367 (446)
T ss_pred CEEEeeccCCC-----ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEE--
Confidence 45666676521 235668999999999999964444455 677887777 47899999999999984 876661
Q ss_pred chhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
...+ ...+..|++|.....+ |+|+ +.+|++||+| ++|- ....+++ .+++
T Consensus 368 -----~~~~--~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~-~~g~-~a~e~i~------~~~~ 417 (446)
T TIGR01424 368 -----RAGF--RPMKNTFSGRQEKTLM---------------KLVVDEKDDKVLGAH-MVGP-DAAEIIQ------GIAI 417 (446)
T ss_pred -----EEec--CchHhHhhcCCCceEE---------------EEEEeCCCCEEEEEE-EECC-CHHHHHH------HHHH
Confidence 1122 2234557788877777 9999 6799999999 6674 4666777 6666
Q ss_pred hhhhhhHH
Q 008662 248 VVFLGTSA 255 (558)
Q Consensus 248 aI~~g~t~ 255 (558)
++..+.+.
T Consensus 418 ai~~~~t~ 425 (446)
T TIGR01424 418 ALKMGATK 425 (446)
T ss_pred HHHcCCCH
Confidence 66665555
No 63
>PRK06370 mercuric reductase; Validated
Probab=97.71 E-value=8.2e-06 Score=88.50 Aligned_cols=126 Identities=7% Similarity=-0.020 Sum_probs=86.7
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc--eeccccchhhhhhhhccceeeeehhc
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~--~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
.|+-++|+.. . .....-|.+|||++|+|++++....++...-..+.- ...+++|++|+.+++.|++|++
T Consensus 303 ~IyAiGD~~~-~----~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~---- 373 (463)
T PRK06370 303 GIYAAGDCNG-R----GAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLV---- 373 (463)
T ss_pred CEEEeeecCC-C----cccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEE----
Confidence 3555666542 1 123568999999999999965455566544333332 5689999999999999999887
Q ss_pred hhcccceeccCCceee-EccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 170 IVALEESMTNGASFVV-YYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~-y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
...+-.++.. |++|.....+ |+|+ +.+|++||+| ++|-+ ...++. .++.
T Consensus 374 ------~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~-~~g~~-a~e~i~------~~~~ 424 (463)
T PRK06370 374 ------GTRPMTRVGRAVEKGETQGFM---------------KVVVDADTDRILGAT-ILGVH-GDEMIH------EILD 424 (463)
T ss_pred ------EEEecCcchhHHhcCCCCEEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHH
Confidence 3332233323 4478777777 9999 6799999999 67755 466677 6666
Q ss_pred hhhhhhHH
Q 008662 248 VVFLGTSA 255 (558)
Q Consensus 248 aI~~g~t~ 255 (558)
++..+.+.
T Consensus 425 ai~~~~t~ 432 (463)
T PRK06370 425 AMYAGAPY 432 (463)
T ss_pred HHHCCCCH
Confidence 66666555
No 64
>PRK14727 putative mercuric reductase; Provisional
Probab=97.65 E-value=1.3e-05 Score=87.63 Aligned_cols=126 Identities=10% Similarity=-0.055 Sum_probs=92.9
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc--eeccccchhhhhhhhccceeeeehhc
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~--~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
.|+-++|+... ...+.-|..|||.+|+|++| ....+++.....+.- ...+++|++|..+++.|++|.+
T Consensus 315 ~IyA~GD~~~~-----~~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~---- 384 (479)
T PRK14727 315 DIYAAGDCSDL-----PQFVYVAAAAGSRAGINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETIS---- 384 (479)
T ss_pred CEEEeeecCCc-----chhhhHHHHHHHHHHHHHcC-CCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEE----
Confidence 46666776531 23456788899999999994 667788877766554 6689999999999999999777
Q ss_pred hhcccceeccCCceeeEccCC-CccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 170 IVALEESMTNGASFVVYYYGT-TKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y~pg~-~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
......++..|+++. .+..+ |+|+ +.+|++||+| ++|-+ ...+|+ .++.
T Consensus 385 ------~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~~~~ilG~~-~~g~~-a~e~i~------~~~~ 435 (479)
T PRK14727 385 ------RVLTMENVPRALANFETDGFI---------------KLVAEEGTRKLIGAQ-ILAHE-GGELIQ------SAAL 435 (479)
T ss_pred ------EEEEcccCchhhhcCCCCeEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHH
Confidence 455556666777763 45666 8899 6799999999 77755 467777 6666
Q ss_pred hhhhhhHHH
Q 008662 248 VVFLGTSAT 256 (558)
Q Consensus 248 aI~~g~t~~ 256 (558)
++..+.+..
T Consensus 436 ai~~~~t~~ 444 (479)
T PRK14727 436 AIHNRMTVE 444 (479)
T ss_pred HHHcCCCHH
Confidence 666666553
No 65
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.63 E-value=1.9e-05 Score=84.56 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=77.6
Q ss_pred hhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehhchhcccceeccCCceeeE
Q 008662 110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 186 (558)
....|.+|||.+|+|+.| ....+++........ ...++.|++|..+++.|++|.+ ......++..+
T Consensus 286 ~~~~A~~~g~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~----------~~~~~~~~~~~ 354 (427)
T TIGR03385 286 LAWGANKMGRIAGENIAG-NDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKT----------VFVKAKTHANY 354 (427)
T ss_pred chHHHHHHHHHHHHHhcC-CCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEE----------EEEecCCCCCc
Confidence 567899999999999995 567787766555444 7799999999999999999777 44444456667
Q ss_pred ccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcC
Q 008662 187 YYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLG 237 (558)
Q Consensus 187 ~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrig 237 (558)
++|.....+ |+|+ +.+|++||+| ++|-++....+.
T Consensus 355 ~~~~~~g~~---------------kli~~~~~~~ilG~~-~~g~~~a~e~i~ 390 (427)
T TIGR03385 355 YPGNSPLHL---------------KLIYEKDTRRILGAQ-AVGKEGADKRID 390 (427)
T ss_pred CCCCceEEE---------------EEEEECCCCeEEEEE-EEccccHHHHHH
Confidence 788887777 9999 5689999999 666554444455
No 66
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.52 E-value=3.4e-05 Score=83.39 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=87.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccc-cccccccccccc-eeccccchhhhhhhhccceeeeehhc
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
.|+-++|+.. ....+..|.+||+.+|.++.| ... ...+.+.+.+.. ...+++|++|+.+++.|++|++.+
T Consensus 304 ~IyAiGD~~~-----~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~-- 375 (461)
T PRK05249 304 HIYAVGDVIG-----FPSLASASMDQGRIAAQHAVG-EATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGR-- 375 (461)
T ss_pred CEEEeeecCC-----CcccHhHHHHHHHHHHHHHcC-CCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEE--
Confidence 4566666542 112467899999999999995 443 334566666655 468999999999999999987711
Q ss_pred hhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhh
Q 008662 170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFV 248 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~a 248 (558)
.......++. ++|.....+ |+|+ +.+|++||+| ++| .....+|+ +++++
T Consensus 376 ------~~~~~~~~~~-~~~~~~g~~---------------klv~~~~~~~ilG~~-~~g-~~a~e~i~------~~~~a 425 (461)
T PRK05249 376 ------ARFKELARAQ-IAGDNVGML---------------KILFHRETLEILGVH-CFG-ERATEIIH------IGQAI 425 (461)
T ss_pred ------Ecccccccee-ecCCCCcEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HHHHH
Confidence 1122233334 457777777 8899 6799999999 777 45666777 66766
Q ss_pred hhhhhHHH
Q 008662 249 VFLGTSAT 256 (558)
Q Consensus 249 I~~g~t~~ 256 (558)
+..+.+..
T Consensus 426 i~~~~t~~ 433 (461)
T PRK05249 426 MEQKGTIE 433 (461)
T ss_pred HHCCCCHH
Confidence 66666653
No 67
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.52 E-value=2.4e-05 Score=84.74 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=90.3
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~ 168 (558)
.|+-.+++.. ....+..|.+|||.+|+|++| ....++ .......+ ...+++|++|+.+++.|++|++.+
T Consensus 303 ~VyAiGD~~~-----~~~~~~~A~~~g~~aa~ni~~-~~~~~~-~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~- 374 (462)
T PRK06416 303 NIYAIGDIVG-----GPMLAHKASAEGIIAAEAIAG-NPHPID-YRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVK- 374 (462)
T ss_pred CEEEeeecCC-----CcchHHHHHHHHHHHHHHHcC-CCCCCC-CCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEE-
Confidence 4556666652 123577899999999999995 555565 45555555 668999999999999999988822
Q ss_pred chhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
.. ....++..| ++.....+ |+|+ +.+|++||+| ++|. +...+++ .+++
T Consensus 375 ------~~-~~~~~~~~~-~~~~~g~~---------------kli~~~~~~~ilG~~-~~g~-~a~e~i~------~~~~ 423 (462)
T PRK06416 375 ------FP-FAGNGKALA-LGETDGFV---------------KLIFDKKDGEVLGAH-MVGA-RASELIQ------EAQL 423 (462)
T ss_pred ------Ee-cCcChHhHh-cCCCceEE---------------EEEEECCCCEEEEEE-EECC-CHHHHHH------HHHH
Confidence 11 123344444 57777777 9999 6799999999 7774 5778888 7777
Q ss_pred hhhhhhHHH
Q 008662 248 VVFLGTSAT 256 (558)
Q Consensus 248 aI~~g~t~~ 256 (558)
++..+.+..
T Consensus 424 ai~~~~t~~ 432 (462)
T PRK06416 424 AINWEATPE 432 (462)
T ss_pred HHHCCCCHH
Confidence 777776663
No 68
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.50 E-value=3e-05 Score=83.89 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=79.8
Q ss_pred hhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehhchhcccceeccCCceeeE
Q 008662 110 SLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 186 (558)
....|.+||+.+++|++|.....+.+........ ...+++|++|+.+++.+ |++ ......++..|
T Consensus 294 la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~--~~~----------~~~~~~~~~~~ 361 (438)
T PRK13512 294 LAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFD--YKM----------VEVTQGAHANY 361 (438)
T ss_pred cchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccCC--cEE----------EEEecCCcCCC
Confidence 3456899999999999953334465666665555 67999999999998764 444 22334455667
Q ss_pred ccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhHH
Q 008662 187 YYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 187 ~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g~t~ 255 (558)
++|.....+ |+|+ +.+|++||+| ++|-.+....|. .+++++..+.+.
T Consensus 362 ~~~~~~g~~---------------klv~d~~~~~ilGa~-~~g~~~a~e~i~------~~~~ai~~~~t~ 409 (438)
T PRK13512 362 YPGNSPLHL---------------RVYYDTSNRKILRAA-AVGKEGADKRID------VLSMAMMNQLTV 409 (438)
T ss_pred cCCCceEEE---------------EEEEECCCCeEEEEE-EEccccHHHHHH------HHHHHHHcCCcH
Confidence 788887777 8999 6789999999 677665666676 666566666555
No 69
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.44 E-value=3.7e-05 Score=84.06 Aligned_cols=125 Identities=10% Similarity=-0.014 Sum_probs=90.1
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc--eeccccchhhhhhhhccceeeeehhc
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~--~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
.|+-++|+... ...+..|.+|||.++++++| ....++......+.- ...+++|++|+.+++.|++|++
T Consensus 306 ~VyAiGDv~~~-----~~la~~A~~eG~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~---- 375 (471)
T PRK06467 306 HIFAIGDIVGQ-----PMLAHKGVHEGHVAAEVIAG-KKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYET---- 375 (471)
T ss_pred CEEEehhhcCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEE----
Confidence 36667776531 12467899999999999995 666787766666553 5689999999999999999877
Q ss_pred hhcccceeccCC--ceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 170 IVALEESMTNGA--SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 170 ~~~~~~~~~~~~--~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
....-. .++ +++|.....+ |+|+ +.+|++||+| ++|-+. ..+++ .++
T Consensus 376 ------~~~~~~~~~~~-~~~~~~~g~~---------------kli~d~~t~~ilG~~-~vg~~a-~e~i~------~~a 425 (471)
T PRK06467 376 ------ATFPWAASGRA-IASDCADGMT---------------KLIFDKETHRVLGGA-IVGTNA-GELLG------EIG 425 (471)
T ss_pred ------EEEecCcchhh-hhCCCCceEE---------------EEEEECCCCeEEEEE-EECCCH-HHHHH------HHH
Confidence 222212 222 3477777777 9999 6689999999 777544 55777 667
Q ss_pred hhhhhhhHHH
Q 008662 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~aI~~g~t~~ 256 (558)
+++..+.+..
T Consensus 426 ~ai~~~~t~~ 435 (471)
T PRK06467 426 LAIEMGCDAE 435 (471)
T ss_pred HHHHCCCCHH
Confidence 6666666653
No 70
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.41 E-value=3.6e-05 Score=83.46 Aligned_cols=125 Identities=14% Similarity=0.029 Sum_probs=87.0
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc--eeccccchhhhhhhhccceeeeehhc
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~--~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
.|+-++|+..- ......|.+||+.+|+|++++....++...-..+.. ...+++|++|+.+++.|++|++
T Consensus 298 ~VyAiGD~~~~-----~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~---- 368 (463)
T TIGR02053 298 GIYAAGDVTGG-----LQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDC---- 368 (463)
T ss_pred CEEEeeecCCC-----cccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEE----
Confidence 46666666542 235678999999999999953355666655444433 6799999999999999999877
Q ss_pred hhcccceecc--CCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 170 IVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 170 ~~~~~~~~~~--~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
.... ...++.| +|..+..+ |+|+ +.+|++||+| ++|.+ ...+++ +++
T Consensus 369 ------~~~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~-~~g~~-a~e~i~------~~~ 418 (463)
T TIGR02053 369 ------RTLPLTNVPRARI-NRDTRGFI---------------KLVAEPGTGKVLGVQ-VVAPE-AAEVIN------EAA 418 (463)
T ss_pred ------EEEecccchHHHh-cCCCcEEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHH
Confidence 2222 2223333 46677777 8899 6799999999 66755 556777 666
Q ss_pred hhhhhhhHH
Q 008662 247 FVVFLGTSA 255 (558)
Q Consensus 247 ~aI~~g~t~ 255 (558)
+++..+.+.
T Consensus 419 ~ai~~~~t~ 427 (463)
T TIGR02053 419 LAIRAGMTV 427 (463)
T ss_pred HHHHCCCCH
Confidence 666665554
No 71
>PRK13748 putative mercuric reductase; Provisional
Probab=97.41 E-value=4.4e-05 Score=84.69 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=88.7
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc--eeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~--~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|+-++|+... ...+.-|..|||.+++|++| ....+++.....+.- ...+++|++|+.+++.|++|++
T Consensus 398 IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~----- 466 (561)
T PRK13748 398 IYAAGDCTDQ-----PQFVYVAAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDS----- 466 (561)
T ss_pred EEEeeecCCC-----ccchhHHHHHHHHHHHHHcC-CCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEE-----
Confidence 5556666421 23456789999999999995 566788777665544 6689999999999999998777
Q ss_pred hcccceeccCCceeeEccC-CCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhh
Q 008662 171 VALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFV 248 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pg-~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~a 248 (558)
....-.++..|+++ .....+ |+|+ +.+|++||+| ++|.. ...++. .++.+
T Consensus 467 -----~~~~~~~~~~~~~~~~~~g~~---------------kli~d~~~~~ilG~~-~~g~~-a~e~i~------~~~~a 518 (561)
T PRK13748 467 -----RTLTLDNVPRALANFDTRGFI---------------KLVIEEGSGRLIGVQ-AVAPE-AGELIQ------TAALA 518 (561)
T ss_pred -----EEEecccCchhhhcCCCCeEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHHH
Confidence 44445566667776 345656 8899 5799999999 66753 366666 55555
Q ss_pred hhhhhHH
Q 008662 249 VFLGTSA 255 (558)
Q Consensus 249 I~~g~t~ 255 (558)
|..+.++
T Consensus 519 i~~~~t~ 525 (561)
T PRK13748 519 IRNRMTV 525 (561)
T ss_pred HHcCCCH
Confidence 6555555
No 72
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=4.9e-05 Score=82.69 Aligned_cols=127 Identities=9% Similarity=-0.018 Sum_probs=84.6
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccc-ccccccccccc---eeccccchhhhhhhhccceeeeeh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR 167 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~ 167 (558)
.|+-++|+... ...+..|.+|||.+|+|++| .... +.......... ...+++|++|+.+++.|++|.+.+
T Consensus 305 ~IyAiGD~~~~-----~~l~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~ 378 (466)
T PRK07818 305 HIYAIGDVTAK-----LQLAHVAEAQGVVAAETIAG-AETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAK 378 (466)
T ss_pred CEEEEeecCCC-----cccHhHHHHHHHHHHHHHcC-CCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEE
Confidence 34556665421 23577899999999999995 4322 21222222222 568999999999999999987721
Q ss_pred hchhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 168 NTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
.. .....++.| .|.....+ |+|+ +.+|++||+| ++| .....+|+ .++
T Consensus 379 -------~~-~~~~~~~~~-~~~~~g~~---------------Klv~~~~~~~ilG~~-~vg-~~a~e~i~------~~~ 426 (466)
T PRK07818 379 -------FP-FTANGKAHG-LGDPTGFV---------------KLVADAKYGELLGGH-LIG-PDVSELLP------ELT 426 (466)
T ss_pred -------EE-CCccchhhh-cCCCCeEE---------------EEEEECCCCeEEEEE-EEC-CCHHHHHH------HHH
Confidence 01 113344444 36666766 8999 6799999999 777 46777888 777
Q ss_pred hhhhhhhHHH
Q 008662 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~aI~~g~t~~ 256 (558)
+++..+.+..
T Consensus 427 ~ai~~~~t~~ 436 (466)
T PRK07818 427 LAQKWDLTAE 436 (466)
T ss_pred HHHHcCCCHH
Confidence 6777766653
No 73
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.35 E-value=5.2e-05 Score=82.59 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=87.9
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc--eeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~--~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|+-.+++... ...+..|.+||+.++++++|+....++...-..+.- ...+++|++|+.+++.|++|.+.+
T Consensus 313 IyAiGD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~--- 384 (472)
T PRK05976 313 IYAIGDVIGE-----PQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGK--- 384 (472)
T ss_pred EEEeeecCCC-----cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEE---
Confidence 5555555421 124678999999999999954336677654222222 568999999999999999977711
Q ss_pred hcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhh
Q 008662 171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV 249 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI 249 (558)
.. ....++..| ++.....+ |+|+ +.+|++||+| ++| .+...+++ ++++++
T Consensus 385 ----~~-~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~-~~g-~~a~e~i~------~~~~ai 435 (472)
T PRK05976 385 ----FP-FAANGKALT-YGESDGFV---------------KVVADRDTHDILGVQ-AVG-PHVTELIS------EFALAL 435 (472)
T ss_pred ----EE-CCcchhhhh-cCCCceEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HHHHHH
Confidence 11 123344444 46677777 8999 6789999999 777 45777888 777777
Q ss_pred hhhhHHH
Q 008662 250 FLGTSAT 256 (558)
Q Consensus 250 ~~g~t~~ 256 (558)
..+.++.
T Consensus 436 ~~~~t~~ 442 (472)
T PRK05976 436 ELGARLW 442 (472)
T ss_pred HCCCCHH
Confidence 7777663
No 74
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.31 E-value=6.6e-05 Score=80.91 Aligned_cols=128 Identities=12% Similarity=0.036 Sum_probs=86.2
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~ 168 (558)
.|+-++|+... + .....|..|||.+++|++|+......+........ ...+++|++|+.+++.|++|++.+
T Consensus 286 ~IyA~GD~~~~-~----~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~- 359 (441)
T PRK08010 286 NIWAMGDVTGG-L----QFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVT- 359 (441)
T ss_pred CEEEeeecCCC-c----cchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEE-
Confidence 35666666431 1 45567889999999999953233334444444333 679999999999999999988722
Q ss_pred chhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
.......+..|+++. ...+ |+|+ +.+|++||+| ++|- ....+|+ .+++
T Consensus 360 -------~~~~~~~~~~~~~~~-~g~~---------------kli~d~~~~~ilG~~-~~g~-~a~e~i~------~~~~ 408 (441)
T PRK08010 360 -------LPVAAIPRARVMNDT-RGVL---------------KAIVDNKTQRILGAS-LLCV-DSHEMIN------IVKM 408 (441)
T ss_pred -------EecCcChhhhhcCCC-ceEE---------------EEEEECCCCEEEEEE-EECC-CHHHHHH------HHHH
Confidence 111233444455544 3346 8899 6799999999 7784 4578888 7777
Q ss_pred hhhhhhHHH
Q 008662 248 VVFLGTSAT 256 (558)
Q Consensus 248 aI~~g~t~~ 256 (558)
++..+.+..
T Consensus 409 ai~~~~t~~ 417 (441)
T PRK08010 409 VMDAGLPYS 417 (441)
T ss_pred HHHCCCCHH
Confidence 777776653
No 75
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.26 E-value=7e-05 Score=81.52 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=85.6
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccc-cccc-ccccccccc-eeccccchhhhhhhhccceeeeehhc
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~~~-~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
|+-++|+... ......|++|||++|+|++++.. ..++ +.+.+.+.- ...+++|++|+.+++.|++|++
T Consensus 298 IyA~GD~~~~-----~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~---- 368 (452)
T TIGR03452 298 VWALGDVSSP-----YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITV---- 368 (452)
T ss_pred EEEeecccCc-----ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEE----
Confidence 5666666531 12345799999999999995322 1233 566666553 7799999999999999999877
Q ss_pred hhcccceeccCCceeeE--ccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 170 IVALEESMTNGASFVVY--YYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y--~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
.. .+.++..| +.+.....+ |+|+ +.+|++||+| ++|-+ ...+|+ .++
T Consensus 369 ------~~-~~~~~~~~~~~~~~~~g~~---------------Klv~d~~t~~ilG~~-~vg~~-a~e~i~------~~~ 418 (452)
T TIGR03452 369 ------KI-QNYGDVAYGWAMEDTTGFC---------------KLIADRDTGKLLGAH-IIGPQ-ASSLIQ------PLI 418 (452)
T ss_pred ------EE-ecCCchhhHhhcCCCCeEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHH
Confidence 21 12222333 346666666 8999 6799999999 67754 466777 666
Q ss_pred hhhhhhhHHH
Q 008662 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~aI~~g~t~~ 256 (558)
.++..+.+..
T Consensus 419 ~ai~~~~t~~ 428 (452)
T TIGR03452 419 TAMAFGLDAR 428 (452)
T ss_pred HHHHcCCCHH
Confidence 6666666653
No 76
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.21 E-value=8.4e-05 Score=80.34 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=86.1
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccc-cccccccc-ceeccccchhhhhhhhccceeeeehhc
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~~~~-~~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
.|+-++|+..- .-.+..|.+|||.+|+|+.+.....++ ..+.+.+. ....+++|++|..+++.|++|.+.+
T Consensus 300 ~IyA~GD~~~~-----~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~-- 372 (460)
T PRK06292 300 GIYAAGDVNGK-----PPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGE-- 372 (460)
T ss_pred CEEEEEecCCC-----ccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEE--
Confidence 35556666421 123578999999999999953233333 22333333 2678999999999999999987721
Q ss_pred hhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhh
Q 008662 170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFV 248 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~a 248 (558)
.-.....++.| ++..+..+ |+|+ +.+|++||+| ++|.+ ...+++ .++.+
T Consensus 373 ------~~~~~~~~~~~-~~~~~g~~---------------klv~d~~~~~ilG~~-~vg~~-a~e~i~------~~~~a 422 (460)
T PRK06292 373 ------VPFEAQGRARV-MGKNDGFV---------------KVYADKKTGRLLGAH-IIGPD-AEHLIH------LLAWA 422 (460)
T ss_pred ------EecccchHHHh-cCCCCeEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHHH
Confidence 11123333444 57777777 9999 6789999999 77764 777888 77777
Q ss_pred hhhhhHHH
Q 008662 249 VFLGTSAT 256 (558)
Q Consensus 249 I~~g~t~~ 256 (558)
|..+.+..
T Consensus 423 i~~~~t~~ 430 (460)
T PRK06292 423 MQQGLTVE 430 (460)
T ss_pred HHCCCCHH
Confidence 77776653
No 77
>PRK06116 glutathione reductase; Validated
Probab=97.21 E-value=8.4e-05 Score=80.34 Aligned_cols=127 Identities=6% Similarity=-0.035 Sum_probs=84.1
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccc-cc-ccccccccccc-eeccccchhhhhhhhccce--eeee
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAA--VDVL 166 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~-~~~~~~~~~~~-~t~astgl~e~~~~~~~~~--~~~~ 166 (558)
.|+-++++... -..+..|.+|||.+|+|++|+.. .. .-.++.+.+.. ...+++||+|+.+++.|++ +.+.
T Consensus 297 ~IyA~GD~~~~-----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~ 371 (450)
T PRK06116 297 GIYAVGDVTGR-----VELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVY 371 (450)
T ss_pred CEEEEeecCCC-----cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEE
Confidence 45666665421 12467899999999999995332 11 12566677666 4799999999999999876 4441
Q ss_pred hhchhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcc
Q 008662 167 RNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVl 245 (558)
+ ......+..++.+..+..+ |+|+ +.+|++||+| ++| .+...+|+ .+
T Consensus 372 ~---------~~~~~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~-~~g-~~a~e~i~------~~ 419 (450)
T PRK06116 372 R---------SSFTPMYTALTGHRQPCLM---------------KLVVVGKEEKVVGLH-GIG-FGADEMIQ------GF 419 (450)
T ss_pred E---------EecchhHHHHhcCCCceEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HH
Confidence 1 1111222223446666666 8999 6799999999 677 55777777 66
Q ss_pred hhhhhhhhHH
Q 008662 246 PFVVFLGTSA 255 (558)
Q Consensus 246 a~aI~~g~t~ 255 (558)
++++..+.+.
T Consensus 420 ~~ai~~~~t~ 429 (450)
T PRK06116 420 AVAIKMGATK 429 (450)
T ss_pred HHHHHCCCCH
Confidence 6666665554
No 78
>PRK14694 putative mercuric reductase; Provisional
Probab=97.19 E-value=0.0001 Score=80.40 Aligned_cols=125 Identities=14% Similarity=0.001 Sum_probs=85.7
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccc--cccccccceeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ--TGGSAGSKLTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~--~~~~~~~~~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|+-++|+.. ....+..|..|||.+|.|++| ....++. .-+.-......|++|++|+.+++.|++|++
T Consensus 305 IyA~GD~~~-----~~~~~~~A~~~G~~aa~~i~~-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~----- 373 (468)
T PRK14694 305 IYAAGDCTD-----QPQFVYVAAAGGSRAAINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDS----- 373 (468)
T ss_pred EEEEeecCC-----CcccHHHHHHHHHHHHHHhcC-CCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEE-----
Confidence 555566642 123566789999999999995 4443322 222222236799999999999999999877
Q ss_pred hcccceeccCCceeeEccCC-CccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhh
Q 008662 171 VALEESMTNGASFVVYYYGT-TKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFV 248 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pg~-~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~a 248 (558)
....-.++..|+++. ....+ |+|+ +.+|++||+| ++|-+ ...+|+ .++++
T Consensus 374 -----~~~~~~~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~-~~g~~-a~e~i~------~~~~a 425 (468)
T PRK14694 374 -----RTLDLENVPRALVNFDTGGFI---------------KMVAERGSGRLLGVQ-VVAGE-AGELIQ------TAVMA 425 (468)
T ss_pred -----EEEecccchhhhhcCCCceEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHHH
Confidence 444555666777764 44556 8899 6799999999 77765 366677 66666
Q ss_pred hhhhhHHH
Q 008662 249 VFLGTSAT 256 (558)
Q Consensus 249 I~~g~t~~ 256 (558)
+..+.+..
T Consensus 426 i~~~~t~~ 433 (468)
T PRK14694 426 LRARMTVN 433 (468)
T ss_pred HHCCCCHH
Confidence 66666653
No 79
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.00066 Score=71.14 Aligned_cols=99 Identities=17% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCcCHHHHHHHHhCC-----CCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHH
Q 008662 270 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 344 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~-----~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aa 344 (558)
..+|+++.++++++.. .+.+|||+|-+-||..|||-.|+ ||.-. +.+.-++
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~---~~l~~~F------------- 296 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISST---KKLGLLF------------- 296 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchH---HHHHHHH-------------
Confidence 4689999999998632 24679999999999999999988 76431 1111111
Q ss_pred HHhhhcccCCCceEEEEeCCC-chHHHHHHHHHHcc------------CCCEEEecchHHHHHH
Q 008662 345 VIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKLG------------VMRAFLVQGGFQSWVK 395 (558)
Q Consensus 345 GI~~Lk~~~kdk~IVVyC~sG-~RS~~AA~~L~~~G------------f~nVy~LdGG~~aWka 395 (558)
+. |...--..+||+|... .|+...|..|+.+- |.+||+|+|||...-.
T Consensus 297 -~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 -RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred -Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 00 0112356789999865 49999998886432 4689999999997755
No 80
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.13 E-value=0.00014 Score=79.40 Aligned_cols=125 Identities=9% Similarity=-0.018 Sum_probs=85.1
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccc-cccccccccc-eeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~-~~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|+-++|+.. ....+..|.+||+.+++|++|.....+ .+.+.+.+.. ...+++|++|+.+++.|++|++
T Consensus 307 IyA~GD~~~-----~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~----- 376 (466)
T PRK07845 307 IYAAGDCTG-----VLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPART----- 376 (466)
T ss_pred EEEEeeccC-----CccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEE-----
Confidence 555566642 123578899999999999995321212 2445554543 6789999999999999999877
Q ss_pred hcccceecc--CCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 171 VALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 171 ~~~~~~~~~--~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
.... ...++ +|+|.....+ |+|+ +.+|++||+| ++|-+ ...+++ .+++
T Consensus 377 -----~~~~~~~~~~~-~~~~~~~g~~---------------kli~d~~~~~ilG~~-~~g~~-a~e~i~------~~~~ 427 (466)
T PRK07845 377 -----VMLPLATNPRA-KMSGLRDGFV---------------KLFCRPGTGVVIGGV-VVAPR-ASELIL------PIAL 427 (466)
T ss_pred -----EEEecccCchh-hhcCCCceEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHH
Confidence 2211 12223 3578888777 9999 6799999999 66744 456677 6666
Q ss_pred hhhhhhHHH
Q 008662 248 VVFLGTSAT 256 (558)
Q Consensus 248 aI~~g~t~~ 256 (558)
++..+.+..
T Consensus 428 ai~~~~t~~ 436 (466)
T PRK07845 428 AVQNRLTVD 436 (466)
T ss_pred HHHcCCCHH
Confidence 666666653
No 81
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.12 E-value=0.00012 Score=79.80 Aligned_cols=122 Identities=11% Similarity=-0.018 Sum_probs=84.3
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccc-----ccccccccccceeccccchhhhhhhhccceeeeeh
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-----IDQTGGSAGSKLTNFSTDLKEASSKATVAAVDVLR 167 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~-----~~~~~~~~~~~~t~astgl~e~~~~~~~~~~~~~~ 167 (558)
|+-++|+... .....-|++|||.+++|++| .... +.+++.| ....+++|++|+.+++.|++|++.+
T Consensus 308 IyA~GD~~~~-----~~la~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~t---~p~ia~vGlte~~a~~~g~~~~~~~ 378 (466)
T PRK06115 308 VWVIGDVTSG-----PMLAHKAEDEAVACIERIAG-KAGEVNYGLIPGVIYT---RPEVATVGKTEEQLKAEGRAYKVGK 378 (466)
T ss_pred EEEeeecCCC-----cccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEC---CcccEEeeCCHHHHHHCCCCEEEEE
Confidence 5556666431 23578899999999999995 4332 3333333 2679999999999999999988722
Q ss_pred hchhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 168 NTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
......+++.| ++.....+ |+|+ +.+|++||+| ++| .....+|+ .++
T Consensus 379 --------~~~~~~~~~~~-~~~~~g~~---------------klv~~~~~~~ilG~~-~~g-~~a~e~i~------~~~ 426 (466)
T PRK06115 379 --------FPFTANSRAKI-NHETEGFA---------------KILADARTDEVLGVH-MVG-PSVSEMIG------EFC 426 (466)
T ss_pred --------EecccChhhHh-cCCCceEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HHH
Confidence 11234445554 45556666 8899 6799999999 777 45677777 667
Q ss_pred hhhhhhhHH
Q 008662 247 FVVFLGTSA 255 (558)
Q Consensus 247 ~aI~~g~t~ 255 (558)
.++..+.+.
T Consensus 427 ~ai~~~~t~ 435 (466)
T PRK06115 427 VAMEFSASA 435 (466)
T ss_pred HHHHcCCCH
Confidence 667666665
No 82
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.11 E-value=0.00014 Score=83.34 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=82.8
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccc---------cccccccc-----eeccccchhhhhhh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ---------TGGSAGSK-----LTNFSTDLKEASSK 157 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~---------~~~~~~~~-----~t~astgl~e~~~~ 157 (558)
.|+-++|+.- . .-.+..|.+||+.+++|++|+....+.+ .....+-. ...|++||+|+.++
T Consensus 464 ~IYAiGDv~g----~-~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~ 538 (659)
T PTZ00153 464 NIFCIGDANG----K-QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAK 538 (659)
T ss_pred CEEEEEecCC----C-ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHH
Confidence 3666667641 1 2356789999999999999532211111 11122222 45889999999999
Q ss_pred hccce--eeeehhchhc-------ccceeccCCceeeEccCC------CccCCChhHHHhhhhhhhhcceee-ccccchh
Q 008662 158 ATVAA--VDVLRNTIVA-------LEESMTNGASFVVYYYGT------TKESLPPEIRDALNLYEDRAVKLW-RPVGSAL 221 (558)
Q Consensus 158 ~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~y~pg~------~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~il 221 (558)
+.|++ |++.+.-+.. -+.++-...-|..||||. ....+ |+|+ +.+|++|
T Consensus 539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~v---------------Kli~d~~t~rIL 603 (659)
T PTZ00153 539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMV---------------KIVYLKDTKEIL 603 (659)
T ss_pred hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEE---------------EEEEECCCCeEE
Confidence 98853 3332211111 111222233467899998 44555 8899 6799999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhHH
Q 008662 222 QQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 222 gaQv~~g~~gvdkrigf~~~~PVla~aI~~g~t~ 255 (558)
|+| ++|.+..+ .|. .++++|..+.+.
T Consensus 604 Ga~-ivG~~A~e-lI~------~~a~aI~~~~tv 629 (659)
T PTZ00153 604 GMF-IVGSYASI-LIH------EGVLAINLKLSV 629 (659)
T ss_pred EEE-EECCCHHH-HHH------HHHHHHHCCCCH
Confidence 999 66766544 666 556566665554
No 83
>PLN02546 glutathione reductase
Probab=97.09 E-value=0.00013 Score=82.08 Aligned_cols=127 Identities=8% Similarity=-0.067 Sum_probs=86.3
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccc-cccccccccccc-eeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|+-++|+... ...+..|++|||.+|+|++|+... ...+.+.+.+.. ...+++||+|+.+++.|++|++
T Consensus 383 IYAaGDv~~~-----~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~----- 452 (558)
T PLN02546 383 IWAVGDVTDR-----INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDV----- 452 (558)
T ss_pred EEEeeccCCC-----cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEE-----
Confidence 5556666421 124568999999999999964322 223566766666 4789999999999999988887
Q ss_pred hcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhh
Q 008662 171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV 249 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI 249 (558)
+...+. ..+..|+++..+..+ |+|+ +.+|++||+| ++|-+ ...+|+ .++.+|
T Consensus 453 --~~~~~~--~~~~~~~~~~~~g~~---------------Klv~d~~t~~ILGa~-ivG~~-a~elI~------~~a~ai 505 (558)
T PLN02546 453 --FTANFR--PLKATLSGLPDRVFM---------------KLIVCAKTNKVLGVH-MCGED-APEIIQ------GFAVAV 505 (558)
T ss_pred --EEEecc--cchhhhhCCCCcEEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHHHH
Confidence 222221 223334444556666 8899 6799999999 77754 577787 777777
Q ss_pred hhhhHHH
Q 008662 250 FLGTSAT 256 (558)
Q Consensus 250 ~~g~t~~ 256 (558)
..+.+..
T Consensus 506 ~~~~t~~ 512 (558)
T PLN02546 506 KAGLTKA 512 (558)
T ss_pred HCCCCHH
Confidence 7776663
No 84
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.08 E-value=0.00015 Score=80.14 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=81.6
Q ss_pred hhhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccc-ccccccccc-eeccccchhhhhhhhccceeeeehh
Q 008662 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~ 168 (558)
..|+-++|+... ...+..|++||+.+++|++|+....++ ..+.+.+.. ...|++||+|+.+++.+..+.+
T Consensus 319 ~~IyA~GDv~~~-----~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~--- 390 (486)
T TIGR01423 319 PNIYAIGDVTDR-----VMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAV--- 390 (486)
T ss_pred CCEEEeeecCCC-----cccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEE---
Confidence 456667777531 124456999999999999964333333 346666666 4699999999999987655444
Q ss_pred chhcccceeccCCceeeEccCCC--ccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcc
Q 008662 169 TIVALEESMTNGASFVVYYYGTT--KESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIV 245 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pg~~--~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVl 245 (558)
+...+ .++..++++.. ...+ |+|+ +.+|++||+| ++| .....+|+ .+
T Consensus 391 ----~~~~~---~~~~~~~~~~~~~~g~~---------------Klv~d~~~~~iLGa~-ivg-~~a~elI~------~~ 440 (486)
T TIGR01423 391 ----YESSF---TPLMHNISGSKYKKFVA---------------KIVTNHADGTVLGVH-LLG-DSSPEIIQ------AV 440 (486)
T ss_pred ----EEEee---CchhhhhccCccCceEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HH
Confidence 22122 11223445543 2344 8899 6799999999 667 44667777 66
Q ss_pred hhhhhhhhHH
Q 008662 246 PFVVFLGTSA 255 (558)
Q Consensus 246 a~aI~~g~t~ 255 (558)
++++..+.+.
T Consensus 441 ~~ai~~~~t~ 450 (486)
T TIGR01423 441 GICLKLNAKI 450 (486)
T ss_pred HHHHHcCCCH
Confidence 6555555554
No 85
>PLN02507 glutathione reductase
Probab=97.08 E-value=0.00019 Score=79.43 Aligned_cols=124 Identities=7% Similarity=-0.050 Sum_probs=79.6
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccccc--ccccccce-eccccchhhhhhhhc-cceeeeehh
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT--GGSAGSKL-TNFSTDLKEASSKAT-VAAVDVLRN 168 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~--~~~~~~~~-t~astgl~e~~~~~~-~~~~~~~~~ 168 (558)
|+-++|+... ......|++|||.+++|++|+. ..+.+. +...+... ..+++|++|+.+++. ++++.+
T Consensus 333 IyAiGDv~~~-----~~l~~~A~~qg~~aa~ni~g~~-~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~--- 403 (499)
T PLN02507 333 IWAIGDVTNR-----INLTPVALMEGTCFAKTVFGGQ-PTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILV--- 403 (499)
T ss_pred EEEeeEcCCC-----CccHHHHHHHHHHHHHHHcCCC-CCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEE---
Confidence 6666776521 1245789999999999999643 322222 23334433 689999999999987 666554
Q ss_pred chhcccceeccCCceeeEccC-CCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 169 TIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pg-~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
....-.....|+++ ..+..+ |+|+ +.+|++||+| ++|-+ ...+|+ .++
T Consensus 404 -------~~~~~~~~~~~~~~~~~~g~~---------------Kli~d~~t~~ilG~~-~vg~~-a~e~i~------~~~ 453 (499)
T PLN02507 404 -------FTSSFNPMKNTISGRQEKTVM---------------KLIVDAETDKVLGAS-MCGPD-APEIMQ------GIA 453 (499)
T ss_pred -------EEeecCccccccccCCCCEEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHH
Confidence 11111222335665 345556 8899 6799999999 77744 456777 666
Q ss_pred hhhhhhhHH
Q 008662 247 FVVFLGTSA 255 (558)
Q Consensus 247 ~aI~~g~t~ 255 (558)
++|..+.+.
T Consensus 454 ~ai~~~~t~ 462 (499)
T PLN02507 454 VALKCGATK 462 (499)
T ss_pred HHHHCCCCH
Confidence 666666555
No 86
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.92 E-value=0.00024 Score=77.20 Aligned_cols=126 Identities=6% Similarity=-0.032 Sum_probs=83.3
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccc-ccccccccc-eeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|+-++|+.. . -..+..|++|||+++++++| ....++ ..+...+.- ...+++|++|+.+++.|++|.+-+
T Consensus 300 VyA~GD~~~-~----~~la~~A~~~g~~aa~~~~g-~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~--- 370 (458)
T PRK06912 300 IYACGDVIG-G----IQLAHVAFHEGTTAALHASG-EDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGE--- 370 (458)
T ss_pred EEEEeecCC-C----cccHHHHHHHHHHHHHHHcC-CCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEE---
Confidence 555666552 1 23466899999999999994 555443 445544432 568999999999999998877721
Q ss_pred hcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhh
Q 008662 171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVV 249 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI 249 (558)
.......+..| .+.....+ |+|+ +.+|++||+| ++|- ....+++ .++.++
T Consensus 371 -----~~~~~~~~~~~-~~~~~g~~---------------kli~d~~~~~ilG~~-~~g~-~a~e~i~------~~~~ai 421 (458)
T PRK06912 371 -----FPFTANGKALI-IGEQTGKV---------------KVIVEPKYQEIVGIS-IIGP-RATELIG------QGTVMI 421 (458)
T ss_pred -----EecCcchhHhh-cCCCceEE---------------EEEEECCCCEEEEEE-EECC-CHHHHHH------HHHHHH
Confidence 01122333333 34455555 8899 6799999999 6675 4556777 666666
Q ss_pred hhhhHHH
Q 008662 250 FLGTSAT 256 (558)
Q Consensus 250 ~~g~t~~ 256 (558)
..+.+..
T Consensus 422 ~~~~t~~ 428 (458)
T PRK06912 422 HTEVTAD 428 (458)
T ss_pred HCCCCHH
Confidence 6666653
No 87
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.84 E-value=0.00034 Score=76.52 Aligned_cols=128 Identities=8% Similarity=-0.055 Sum_probs=85.2
Q ss_pred hhhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccc-cccccccc-ceeccccchhhhhhhhccceeeeehh
Q 008662 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRN 168 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~-~~~~~~~~-~~t~astgl~e~~~~~~~~~~~~~~~ 168 (558)
..|+-++++... ...+..|.+||+.+|+++.| ....++ ..+.+.+. ....+++|++|+.+++.|++|.+-+
T Consensus 315 ~~VyA~GD~~~~-----~~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~- 387 (475)
T PRK06327 315 PNVYAIGDVVRG-----PMLAHKAEEEGVAVAERIAG-QKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGK- 387 (475)
T ss_pred CCEEEEEeccCC-----cchHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEE-
Confidence 345566666431 13577899999999999995 432221 23333332 2668999999999999999987711
Q ss_pred chhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchh
Q 008662 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPF 247 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~ 247 (558)
.. .....++.| ++.....+ |+|+ +.+|++||+| ++|.+ ...+++ .+++
T Consensus 388 ------~~-~~~~~~~~~-~~~~~g~~---------------klv~d~~~~~ilG~~-~~g~~-a~e~i~------~~~~ 436 (475)
T PRK06327 388 ------FP-FMANGRALA-MGEPDGFV---------------KIIADAKTDEILGVH-VIGPN-ASELIA------EAVV 436 (475)
T ss_pred ------Ec-ccccchhhh-cCCCCeEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHHH
Confidence 11 112344444 46666766 8999 6799999999 77744 666777 6677
Q ss_pred hhhhhhHHH
Q 008662 248 VVFLGTSAT 256 (558)
Q Consensus 248 aI~~g~t~~ 256 (558)
+|..+.+..
T Consensus 437 ai~~~~t~~ 445 (475)
T PRK06327 437 AMEFKASSE 445 (475)
T ss_pred HHHCCCCHH
Confidence 777776663
No 88
>PTZ00058 glutathione reductase; Provisional
Probab=96.77 E-value=0.00033 Score=78.90 Aligned_cols=112 Identities=8% Similarity=-0.085 Sum_probs=73.7
Q ss_pred hhhhHhhhHHHHHHHhhcccc-ccccccccccccc-eeccccchhhhhhhhc-cc-eeeeehhchhcccceeccCCceee
Q 008662 110 SLTSIKKSTSEAVDNVVSRVF-SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VA-AVDVLRNTIVALEESMTNGASFVV 185 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~-~~~~~~~~~~~~~-~t~astgl~e~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 185 (558)
....|++|||++|+|++|+.. .....++.+.+.- ...|++||+|+.+++. |+ .+.+ ...+..+..
T Consensus 414 la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~-----------~~~~~~~~~ 482 (561)
T PTZ00058 414 LTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKI-----------YESRFTNLF 482 (561)
T ss_pred chHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEE-----------EEeecchhh
Confidence 467899999999999996422 1222356666555 5789999999999977 65 3444 111222211
Q ss_pred E-----ccCC-CccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhHH
Q 008662 186 Y-----YYGT-TKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSA 255 (558)
Q Consensus 186 y-----~pg~-~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g~t~ 255 (558)
+ .|+. ....+ |+|+ +.+|++||+| ++| .....+|+ .+++++..+.+.
T Consensus 483 ~~~~~~~~~~~~~g~~---------------Kli~~~~t~~ILG~~-ivG-~~a~elI~------~~a~ai~~~~t~ 536 (561)
T PTZ00058 483 FSVYDMDPAQKEKTYL---------------KLVCVGKEELIKGLH-IVG-LNADEILQ------GFAVALKMNATK 536 (561)
T ss_pred hhhhcccccCCCCeEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HHHHHHHcCCCH
Confidence 1 1443 33445 8899 6899999999 777 55777777 666666666555
No 89
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.74 E-value=0.00035 Score=76.05 Aligned_cols=125 Identities=9% Similarity=0.086 Sum_probs=79.3
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccc-ccc-ccccccccc-eeccccchhhhhhhhc-cce-eeee
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SID-QTGGSAGSK-LTNFSTDLKEASSKAT-VAA-VDVL 166 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~-~~~-~~~~~~~~~-~t~astgl~e~~~~~~-~~~-~~~~ 166 (558)
.|+-++|+... ...+..|.+|||.+++|++||... .++ ..+...+.- ...+++||+|+.+++. |+. +.+
T Consensus 297 ~IyAiGD~~~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~- 370 (450)
T TIGR01421 297 GIYALGDVVGK-----VELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKV- 370 (450)
T ss_pred CEEEEEecCCC-----cccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEE-
Confidence 35666665421 123567899999999999964322 111 223333222 4689999999999776 654 443
Q ss_pred hhchhcccceeccCCceeeEc---cCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCC
Q 008662 167 RNTIVALEESMTNGASFVVYY---YGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPND 242 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~y~---pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~ 242 (558)
...+.+ ..|+ +|..+..+ |+|+ +.+|++||+| ++| .+...+|+
T Consensus 371 ----------~~~~~~-~~~~~~~~~~~~g~~---------------klv~~~~~~~ilG~~-~~g-~~a~e~i~----- 417 (450)
T TIGR01421 371 ----------YNSSFT-PMYYAMTSEKQKCRM---------------KLVCAGKEEKVVGLH-GIG-DGVDEMLQ----- 417 (450)
T ss_pred ----------EEEEcC-hhHHHHhcCCCceEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH-----
Confidence 111222 2232 46666666 8999 6799999999 667 67777777
Q ss_pred CcchhhhhhhhHHH
Q 008662 243 PIVPFVVFLGTSAT 256 (558)
Q Consensus 243 PVla~aI~~g~t~~ 256 (558)
.+++++..+.+..
T Consensus 418 -~~~~ai~~~~t~~ 430 (450)
T TIGR01421 418 -GFAVAIKMGATKA 430 (450)
T ss_pred -HHHHHHHCCCCHH
Confidence 6666666666553
No 90
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.65 E-value=0.00051 Score=74.23 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=84.6
Q ss_pred hhhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeeh
Q 008662 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR 167 (558)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~ 167 (558)
..|+-.+++.. ....+..|.+||+++|+++.++....++. ....... ...+++|++|+.+++.|++|.+.+
T Consensus 300 ~~IyaiGD~~~-----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~-~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~ 373 (461)
T TIGR01350 300 PGIYAIGDVIG-----GPMLAHVASHEGIVAAENIAGKEPAPIDY-DAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGK 373 (461)
T ss_pred CCEEEeeecCC-----CcccHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEE
Confidence 34555566542 12346789999999999999533324432 2222222 557899999999999999987722
Q ss_pred hchhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcch
Q 008662 168 NTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVP 246 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla 246 (558)
..+ ...++..| ++..+..+ |+|+ +.+|++||+| ++|.+ ...+++ +++
T Consensus 374 -------~~~-~~~~~~~~-~~~~~g~~---------------kl~~~~~~~~ilG~~-~~g~~-a~e~i~------~~~ 421 (461)
T TIGR01350 374 -------FPF-AANGKALA-LGETDGFV---------------KIIADKKTGEILGAH-IIGPH-ATELIS------EAV 421 (461)
T ss_pred -------EeC-ccchHHHh-cCCCceEE---------------EEEEECCCCEEEEEE-EECCC-HHHHHH------HHH
Confidence 111 12233444 46677777 8999 6789999999 77744 557777 777
Q ss_pred hhhhhhhHHH
Q 008662 247 FVVFLGTSAT 256 (558)
Q Consensus 247 ~aI~~g~t~~ 256 (558)
+++..+.+..
T Consensus 422 ~ai~~~~t~~ 431 (461)
T TIGR01350 422 LAMELELTVE 431 (461)
T ss_pred HHHHCCCCHH
Confidence 7777776663
No 91
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.59 E-value=0.00064 Score=73.31 Aligned_cols=115 Identities=7% Similarity=-0.095 Sum_probs=78.9
Q ss_pred hhhhHhhhHHHHHHHhhcccc--ccccccccccccc-eeccccchhhhhhhhccceeeeehhchhcccceeccCCceeeE
Q 008662 110 SLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVY 186 (558)
Q Consensus 110 ~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 186 (558)
..+-|..++|.+++++.++.. ....+.+.+.+.- ...+++|++|+.+++.|++|.+-+ .......++.
T Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~--------~~~~~~~~~~- 368 (438)
T PRK07251 298 FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKE--------LLVAAMPRAH- 368 (438)
T ss_pred cHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEE--------EECCcchhhh-
Confidence 456788899999999995422 1234566665433 678999999999999999987722 1111222222
Q ss_pred ccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhHHH
Q 008662 187 YYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT 256 (558)
Q Consensus 187 ~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrigf~~~~PVla~aI~~g~t~~ 256 (558)
+++.....+ |+|+ +.+|++||+| ++| .+...+|+ ++++++..+.+..
T Consensus 369 ~~~~~~g~~---------------kli~d~~~~~ilG~~-~~g-~~a~e~i~------~~~~ai~~~~t~~ 416 (438)
T PRK07251 369 VNNDLRGAF---------------KVVVNTETKEILGAT-LFG-EGSQEIIN------LITMAMDNKIPYT 416 (438)
T ss_pred hcCCCcEEE---------------EEEEECCCCEEEEEE-EEC-CCHHHHHH------HHHHHHHCCCCHH
Confidence 344445555 8899 6789999999 777 46778888 7777777766653
No 92
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=96.56 E-value=0.0001 Score=65.00 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=56.8
Q ss_pred eeccccchhhhhhhhccceeeeehhchhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhh
Q 008662 144 LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQ 222 (558)
Q Consensus 144 ~t~astgl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilg 222 (558)
...+++|++|+.+++.|++|++.+ .......+..|+++ ....+ |+|+ +.+|++||
T Consensus 9 p~ia~vGlte~~a~~~g~~~~~~~--------~~~~~~~~~~~~~~-~~g~~---------------Kli~d~~t~~IlG 64 (110)
T PF02852_consen 9 PEIASVGLTEEEARKQGIDYEVVT--------VPFKSNDRARYYPE-TEGFV---------------KLIFDKKTGRILG 64 (110)
T ss_dssp SEEEEEES-HHHHHHHTSGEEEEE--------EEEGGEHHHHHTTT-TEEEE---------------EEEEETTTTBEEE
T ss_pred CceEEEccCHHHHHhccCceeeee--------ecccccchhcccCC-cceee---------------EEEEEeeccceee
Confidence 457999999999999998887722 23334555666666 66767 9999 66999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchhhhhhhhHHH
Q 008662 223 QQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSAT 256 (558)
Q Consensus 223 aQv~~g~~gvdkrigf~~~~PVla~aI~~g~t~~ 256 (558)
+| ++|. +...+|+ .+++++..+.+..
T Consensus 65 a~-~vg~-~a~e~I~------~~~~ai~~~~t~~ 90 (110)
T PF02852_consen 65 AQ-IVGP-NASELIN------ELALAIQNGLTVE 90 (110)
T ss_dssp EE-EEET-THHHHHH------HHHHHHHTTSBHH
T ss_pred ee-eecC-chHHHHH------HHHHHHHcCCCHH
Confidence 99 6674 3444777 6666666665554
No 93
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=95.99 E-value=0.0018 Score=71.48 Aligned_cols=126 Identities=7% Similarity=-0.050 Sum_probs=77.6
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccc--ccccccccccccc-eeccccchhhhhhhhc-cc-eeeee
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VA-AVDVL 166 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~--~~~~~~~~~~~~~-~t~astgl~e~~~~~~-~~-~~~~~ 166 (558)
.|+-++|+.... ......|++|||.+++|++++.. ..+++. .+.+.. ...+++||+|+.+++. |+ .+++.
T Consensus 312 ~IyA~GDv~~~~----~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~-p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~ 386 (484)
T TIGR01438 312 YIYAVGDILEDK----QELTPVAIQAGRLLAQRLFSGSTVICDYENV-PTTVFTPLEYGACGLSEEKAVEKFGEENIEVF 386 (484)
T ss_pred CEEEEEEecCCC----ccchHHHHHHHHHHHHHHhcCCCcccccccC-CeEEeCCCceeeecCCHHHHHHhcCCCcEEEE
Confidence 466666665311 12356799999999999996442 234443 333333 6789999999999986 55 44441
Q ss_pred hhchhcccceeccCCceeeE-ccCC---CccCCChhHHHhhhhhhhhcceee-c-cccchhhHHHHHHHHHHHHhcCCCC
Q 008662 167 RNTIVALEESMTNGASFVVY-YYGT---TKESLPPEIRDALNLYEDRAVKLW-R-PVGSALQQQVSVAIEGLERSLGFDP 240 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~y-~pg~---~~~~l~p~ik~~~~~~~~~~k~i~-~-~~G~ilgaQv~~g~~gvdkrigf~~ 240 (558)
..+.....| ++.. ....+ |+|+ + .+|++||+| ++|- .....|+
T Consensus 387 -----------~~~~~~~~~~~~~~~~~~~g~~---------------Kli~~~~~t~~ILG~~-ivg~-~a~e~I~--- 435 (484)
T TIGR01438 387 -----------HSYFWPLEWTIPSRDNSNKCYA---------------KAVCNRKENERVVGFH-VVGP-NAGEVTQ--- 435 (484)
T ss_pred -----------EeecchhhhHhhCCCccCCcEE---------------EEEEecCCCCeEEEEE-EECC-CHHHHHH---
Confidence 111111111 2221 23444 8888 4 489999999 6674 4566677
Q ss_pred CCCcchhhhhhhhHHH
Q 008662 241 NDPIVPFVVFLGTSAT 256 (558)
Q Consensus 241 ~~PVla~aI~~g~t~~ 256 (558)
++++++..+.+..
T Consensus 436 ---~~a~ai~~~~t~~ 448 (484)
T TIGR01438 436 ---GFAAALRCGLTKK 448 (484)
T ss_pred ---HHHHHHHcCCCHH
Confidence 7776777766653
No 94
>COG2603 Predicted ATPase [General function prediction only]
Probab=95.73 E-value=0.015 Score=60.62 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=64.1
Q ss_pred HHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCc--ccccchhHhhhcC-c---------hhhhhHHHH
Q 008662 276 KSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL--PEVGGSVKKLLRG-G---------RELDDTLTA 343 (558)
Q Consensus 276 ~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL--~eL~~~l~ell~~-~---------~~L~~ll~a 343 (558)
++...++. .+..|||||.|.||..||-|++. |.|+ ++-+..+..-.+. . ..++..+..
T Consensus 6 q~~~~~~~--~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~ 75 (334)
T COG2603 6 QDYRALLL--ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQ 75 (334)
T ss_pred HHHHHHHh--cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHH
Confidence 34444543 46789999999999999999988 6665 1111111100000 0 001111111
Q ss_pred HHHhhhcccCCCceEEEEeCCCc-hHHHHHHHH-HHccCCCEEEecchHHHHHH
Q 008662 344 AVIRNLKIVQDRSKVIVMDADGT-RSKGIARSL-RKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 344 aGI~~Lk~~~kdk~IVVyC~sG~-RS~~AA~~L-~~~Gf~nVy~LdGG~~aWka 395 (558)
--+.+-++...+.++-++|..|. ||...+.+| ...|++ +-.+.||+.+.+.
T Consensus 76 ~~l~ask~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt 128 (334)
T COG2603 76 QRLEASKAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT 128 (334)
T ss_pred HHHHHHHHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH
Confidence 11111123345677877787755 999999999 778874 5566799987654
No 95
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.16 E-value=0.0073 Score=66.91 Aligned_cols=69 Identities=4% Similarity=-0.082 Sum_probs=45.2
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccccccc--ccccccccc-eeccccchhhhhhhhc-c-ceeee
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID--QTGGSAGSK-LTNFSTDLKEASSKAT-V-AAVDV 165 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~--~~~~~~~~~-~t~astgl~e~~~~~~-~-~~~~~ 165 (558)
.|+-++|+... ....+..|.+|||++|+|++|+. ..+. ..+.+.+.- ...|++|++|+.+++. + ..+.+
T Consensus 309 ~IyAiGDv~~~----~~~l~~~A~~~g~~aa~ni~g~~-~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~ 382 (499)
T PTZ00052 309 NIFAVGDVVEG----RPELTPVAIKAGILLARRLFKQS-NEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEE 382 (499)
T ss_pred CEEEEEEecCC----CcccHHHHHHHHHHHHHHHhCCC-CCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEE
Confidence 45555664421 11245789999999999999533 2221 334555543 6789999999999987 4 35555
No 96
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.07 E-value=0.095 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=59.2
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCc------cccccccccccCcccccchhHhhhcCchhhhhHHHH
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 343 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA------~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~a 343 (558)
.+.++++++..+.+ ..=-.+||.|++.|... -|.. .....+.+.++|+.. ..+ +++.+......
T Consensus 12 s~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~--~p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~ 81 (135)
T TIGR01244 12 SPQLTKADAAQAAQ-LGFKTVINNRPDREEES--QPDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAA 81 (135)
T ss_pred cCCCCHHHHHHHHH-CCCcEEEECCCCCCCCC--CCCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHH
Confidence 36889999988653 33458999999877442 2211 001123455666531 111 11111111111
Q ss_pred HHHhhhcccCCCceEEEEeCCCchHHHHHHHH-HHccCCCEEEecchHHHHHHcCCCeec
Q 008662 344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 402 (558)
Q Consensus 344 aGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~L-~~~Gf~nVy~LdGG~~aWkaAGLPV~~ 402 (558)
+ . ..+.||++||++|.|+..++..+ ...|...--+ +..=++.|+.+..
T Consensus 82 ~--~-----~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 82 I--G-----AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H--H-----hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 1 24689999999999987776543 3346532111 2333556666554
No 97
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.69 E-value=0.078 Score=47.88 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=39.8
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCc------cccccccccccCcccccchhHhhhcCchhhhhHHHH
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 343 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA------~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~a 343 (558)
.+.++++++.++-+ ..--.+|+.|+..|-. +-|.. ..+.-+.|.++|+..- .+. .+.+++. .+
T Consensus 12 s~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~-----~~~v~~f-~~ 80 (110)
T PF04273_consen 12 SGQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGG--AIT-----EEDVEAF-AD 80 (110)
T ss_dssp ECS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TT--T-------HHHHHHH-HH
T ss_pred CCCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCC--CCC-----HHHHHHH-HH
Confidence 36899999998875 2345899999875532 22211 1122245567776321 111 1111111 11
Q ss_pred HHHhhhcccCCCceEEEEeCCCchHHHHHHH
Q 008662 344 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 374 (558)
Q Consensus 344 aGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~ 374 (558)
+ +. ...+||++||++|.|+...|..
T Consensus 81 ~-l~-----~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 81 A-LE-----SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp H-HH-----TTTTSEEEE-SCSHHHHHHHHH
T ss_pred H-HH-----hCCCCEEEECCCChhHHHHHHH
Confidence 1 11 2357999999999999655543
No 98
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=89.01 E-value=1.5 Score=41.34 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=19.4
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhC
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERD 302 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~G 302 (558)
...+|++++..+.+ -.=-.+||.|++.|..+.
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~ 58 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERA 58 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHH
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccC
Confidence 45789998887763 333589999999998764
No 99
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=88.73 E-value=0.17 Score=56.12 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=63.6
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccc-cccccccccc-eeccccchhhhhhhhccceeeeehhch
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRNTI 170 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~-~~~~~~~~~~-~t~astgl~e~~~~~~~~~~~~~~~~~ 170 (558)
|.-.+|++..-+ -..-|..|||++++|++|+..... ...+-.++-- =..++.||+|..+++.|++|.+.+.-+
T Consensus 305 IyA~GDV~~~~~-----Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f 379 (454)
T COG1249 305 IYAIGDVIGGPM-----LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPF 379 (454)
T ss_pred EEEeeccCCCcc-----cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeec
Confidence 555566544433 345789999999999995232222 2333333333 347899999999999999988843222
Q ss_pred hcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHH
Q 008662 171 VALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQ 224 (558)
Q Consensus 171 ~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQ 224 (558)
.+.-..+. -+.....+ |+|+ ..+|++||++
T Consensus 380 ~~~~ra~~---------~~~~~G~~---------------Klv~d~~t~~IlGah 410 (454)
T COG1249 380 AANGRAIT---------MGETDGFV---------------KLVVDKETGRILGAH 410 (454)
T ss_pred ccchhHHh---------ccCCceEE---------------EEEEECCCCeEEEEE
Confidence 22222222 11122333 7788 6889999986
No 100
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=84.40 E-value=0.4 Score=54.31 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred CCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhc
Q 008662 271 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 350 (558)
Q Consensus 271 g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk 350 (558)
.+||++++..+ +...++|.|...||.++|+++++ |+|...-.+.+.++..- .++.
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~l----------~~~~--- 676 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRFL----------PGIV--- 676 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhcc----------hHhH---
Confidence 35666665544 35679999999999999999999 89986322333332110 0111
Q ss_pred ccCCCceEEEEeCCCchHHHHHHHHHHccCCCEEEecchHHHH
Q 008662 351 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 393 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aW 393 (558)
.-..+.++++.....-+..-...+..+-+.+...+.+|+.+.
T Consensus 677 -~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 677 -CSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred -HhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 013445555544444444444445555577777888888743
No 101
>PLN02777 photosystem I P subunit (PSI-P)
Probab=82.72 E-value=1.8 Score=41.90 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhc
Q 008662 447 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLL 484 (558)
Q Consensus 447 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~~ 484 (558)
...+||++|+.=.|++.++.|++.++|++|+++++.+-
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk 160 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTY 160 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998764
No 102
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=82.53 E-value=0.19 Score=52.99 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=41.5
Q ss_pred CCCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccchhHhhh
Q 008662 269 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 331 (558)
Q Consensus 269 ~~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~l~ell 331 (558)
|...-+++++.+.+. .....+|+|....|..+||||++ ++|...+.....++.
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 444557788888775 35679999999999999999999 899876766666554
No 103
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=81.53 E-value=3 Score=33.79 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=29.4
Q ss_pred hhhhhhchhhhhhHhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHH
Q 008662 429 QFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFK 477 (558)
Q Consensus 429 ~llG~~~G~~~~~~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~ 477 (558)
+++|.++.+.+... ...+..++ .+++|+.+++. ++++||....++
T Consensus 14 ~~~G~~l~~~~~~~-~~~~~~~~--~~~~g~~ll~~-g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGLLG-LFGSWGWL--LGFVGAMLLVT-GITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHHHh-cccchHHH--HHHHHHHHHHH-HHHCcCHhHHHh
Confidence 45555544333222 22222445 89999998888 999999988876
No 104
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=80.86 E-value=5.9 Score=35.36 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.8
Q ss_pred CCceEEEEeCCCc-hHHHH--HHHHHHccC
Q 008662 354 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 380 (558)
Q Consensus 354 kdk~IVVyC~sG~-RS~~A--A~~L~~~Gf 380 (558)
.+++|+|||..|. ||... +..+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999997 87643 334454544
No 105
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=80.80 E-value=1.4 Score=45.96 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=55.5
Q ss_pred CcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCccccccccccccCcccccch--------hHhhhcCchhhhhHHHH
Q 008662 272 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--------VKKLLRGGRELDDTLTA 343 (558)
Q Consensus 272 ~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA~gai~~d~~nIPL~eL~~~--------l~ell~~~~~L~~ll~a 343 (558)
.+|.+++.+.+. ..+.+++|.|+ +..||.+|+ ++.++.+..+ ++.++++......
T Consensus 5 ~~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~~---- 67 (343)
T KOG1717|consen 5 SKSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDKR---- 67 (343)
T ss_pred HHHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccccc----
Confidence 356777777774 46789999999 456888776 4444332211 1112221111100
Q ss_pred HHHhhhcccCCCceEEEEeCCCc----hH--H----HHHHHHHHccCCCEEEecchHHHHHH
Q 008662 344 AVIRNLKIVQDRSKVIVMDADGT----RS--K----GIARSLRKLGVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 344 aGI~~Lk~~~kdk~IVVyC~sG~----RS--~----~AA~~L~~~Gf~nVy~LdGG~~aWka 395 (558)
-+.--+..++|.|+.+.. .+ . ..-+.++..|+ .+|.|.|||...+.
T Consensus 68 -----~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 68 -----FPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred -----ccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 000002357888987621 01 0 11234577888 69999999987765
No 106
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=80.01 E-value=0.81 Score=54.48 Aligned_cols=93 Identities=14% Similarity=-0.009 Sum_probs=59.8
Q ss_pred hhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehhc
Q 008662 93 MIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNT 169 (558)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~~ 169 (558)
|+-++++.. ..+.+...+..|.+||+++|+|++| ....|++...+...| +.++|+|. . .+.+
T Consensus 276 IYAiGD~a~-~~~~~~gl~~~a~~~a~vaa~~i~g-~~~~~~g~~~~~~lk~~G~~v~s~G~--~----~~~~------- 340 (847)
T PRK14989 276 IYAIGECAS-WNNRVFGLVAPGYKMAQVAVDHLLG-SENAFEGADLSAKLKLLGVDVGGIGD--A----HGRT------- 340 (847)
T ss_pred EEEeeccee-EcCcccccHHHHHHHHHHHHHHhcC-CCcCCCCcccceEEEECCcceEeccc--c----cCCC-------
Confidence 444455432 1233455678899999999999995 678899988887777 55666662 1 1211
Q ss_pred hhcccceeccCCceeeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHH
Q 008662 170 IVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQ 224 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQ 224 (558)
.+.....|+++...... |+|+ ...++++|+|
T Consensus 341 ---------~~~~~~~~~~~~~~~y~---------------Klv~~~~~~~LlGa~ 372 (847)
T PRK14989 341 ---------PGARSYVYLDESKEIYK---------------RLIVSEDNKTLLGAV 372 (847)
T ss_pred ---------CCceeEEEEcCCCCEEE---------------EEEEECCCCEEEEEE
Confidence 01112346666666656 8888 5678898886
No 107
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=69.11 E-value=7.1 Score=34.24 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHh
Q 008662 447 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLL 483 (558)
Q Consensus 447 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~ 483 (558)
...+++++|+.=.+.+.++.++..++|++|.+.++.+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~ 84 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSL 84 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHH
Confidence 5677899999999999999999999999999999865
No 108
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=67.29 E-value=7.9 Score=40.19 Aligned_cols=97 Identities=21% Similarity=0.166 Sum_probs=69.6
Q ss_pred hhhhhhHhhhHHHHHHHhhccccccccccccccccc---eeccccchhhhhhhhccceeeeehhchhcccceeccCCc-e
Q 008662 108 TSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGAS-F 183 (558)
Q Consensus 108 ~~~~~~a~~~~r~~~d~~~~g~~~~~~~~~~~~~~~---~t~astgl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 183 (558)
.-....|++++++++.++.+ . ..+.+..+....+ +...++|+++. +..+++ .+ ..+....+ .
T Consensus 290 ~~~~~~a~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~---------~~~~~~~~~~ 355 (415)
T COG0446 290 IALWAIAVAAGRIAAENIAG-A-LRIPGLLGTVISDVGDLCAASTGLTEG--KERGID-VV---------LVVSGGKDPR 355 (415)
T ss_pred eechhhHhhhhHHHHHHhcc-c-cccccccCceEEEEcCeEEEEecCCcc--ccccee-ee---------EEEeccCccc
Confidence 34566899999999999995 4 7788888887766 77899999998 555555 22 12333444 6
Q ss_pred eeEccCCCccCCChhHHHhhhhhhhhcceee-ccccchhhHHHHHHHHHHHHhcC
Q 008662 184 VVYYYGTTKESLPPEIRDALNLYEDRAVKLW-RPVGSALQQQVSVAIEGLERSLG 237 (558)
Q Consensus 184 ~~y~pg~~~~~l~p~ik~~~~~~~~~~k~i~-~~~G~ilgaQv~~g~~gvdkrig 237 (558)
..|||++..... |.++ ...+.++++|. .+ ..++++
T Consensus 356 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~-~~~~~~ 391 (415)
T COG0446 356 AHLYPGAELVGI---------------KLVGDADTGRILGGQE---LE-VLKRIG 391 (415)
T ss_pred ccccCCCCeEEE---------------EEEEcCcccceehhhh---HH-HHhhhh
Confidence 788888877655 6677 78899999884 33 445555
No 109
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.98 E-value=12 Score=34.96 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCCCc------cccccccccccCcc--cccc-hhHhhhcCchhhhhH
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGG-SVKKLLRGGRELDDT 340 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIPGA------~gai~~d~~nIPL~--eL~~-~l~ell~~~~~L~~l 340 (558)
.+.++++++.++-+ ..-..+|--|+..|= -.=|+. .+..-..|.+||.. .+.. ... .+.+.
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~-------~f~~A 82 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVE-------AFQRA 82 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHH-------HHHHH
Confidence 47899999998864 233578888985442 222321 11222345567752 2221 111 11111
Q ss_pred HHHHHHhhhcccCCCceEEEEeCCCchHHHHHHH
Q 008662 341 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 374 (558)
Q Consensus 341 l~aaGI~~Lk~~~kdk~IVVyC~sG~RS~~AA~~ 374 (558)
+ . ..+.||+-||++|.||...+.+
T Consensus 83 l---~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 83 L---D-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred H---H-------HhCCCEEeeecCCchHHHHHHH
Confidence 1 1 3477999999999999766544
No 110
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=64.33 E-value=12 Score=33.67 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.5
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccC
Q 008662 353 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 380 (558)
Q Consensus 353 ~kdk~IVVyC~sG~-RS~~--AA~~L~~~Gf 380 (558)
..+++|+|||..|. ||.. +++.+...|+
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 46789999999997 7765 3445566666
No 111
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=63.68 E-value=16 Score=35.79 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=34.5
Q ss_pred EEEEcCChhhHhhCCCCCcc---ccccccccccCcccccchhHhhhcCchhhhhHHHHHHHhhhcccCCCceEEEEeCCC
Q 008662 289 VLIDVRHEDLRERDGIPDLR---RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 365 (558)
Q Consensus 289 vLIDVRs~~Ef~~GHIPGA~---gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaGI~~Lk~~~kdk~IVVyC~sG 365 (558)
.++=.-+..|..+-.+|+-. ...-+.|-++|+.+....- .+.+.+++..+.. .+..+++|++||..|
T Consensus 74 ~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd------~~~~~~i~~eL~~----~L~~g~~V~vHC~GG 143 (168)
T PF05706_consen 74 DVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPD------FAAAWQILEELAA----RLENGRKVLVHCRGG 143 (168)
T ss_dssp EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHHH----HHHTT--EEEE-SSS
T ss_pred EEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCC------HHHHHHHHHHHHH----HHHcCCEEEEECCCC
Confidence 34446677777776776431 1112344466664433110 0111122222211 124688999999998
Q ss_pred c-hHHH-HHHHHHHccC
Q 008662 366 T-RSKG-IARSLRKLGV 380 (558)
Q Consensus 366 ~-RS~~-AA~~L~~~Gf 380 (558)
. |+.. ||..|.++|-
T Consensus 144 lGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 144 LGRTGLVAACLLLELGD 160 (168)
T ss_dssp SSHHHHHHHHHHHHH-S
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 7 7755 6667777663
No 112
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=59.04 E-value=7.8 Score=35.19 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.7
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----cCCCEEEecchHHHH
Q 008662 358 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 393 (558)
Q Consensus 358 IVVyC~sG~-RS~~AA~~L~~~----Gf~nVy~LdGG~~aW 393 (558)
|+|+|..+. ||..|..+|+++ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998765 999999999888 777899999998866
No 113
>PLN02806 complex I subunit
Probab=55.45 E-value=13 Score=32.18 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=40.4
Q ss_pred chhhhhhchhhhhh---------HhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcccch
Q 008662 428 VQFLGFGVGCFAVL---------YVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVR 488 (558)
Q Consensus 428 l~llG~~~G~~~~~---------~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~~~~~~ 488 (558)
..++|+++|+..-+ |.-.||+..+ +.|+|..|.+.+-.+| ..+.+|+-+.|.-.|
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~----~~G~GA~~~n~l~~we--~kL~edldk~L~~~r 68 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHVL----AMGLGAVFANQLVKWE--VKLKEDLDKMLAKAR 68 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHHH----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45678888866543 4457899988 7889999998888876 467888876665554
No 114
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=54.16 E-value=17 Score=34.22 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCceEEEE-eC----CCchHHHHHHHHHHccCCCEEEecchHHHH
Q 008662 354 DRSKVIVM-DA----DGTRSKGIARSLRKLGVMRAFLVQGGFQSW 393 (558)
Q Consensus 354 kdk~IVVy-C~----sG~RS~~AA~~L~~~Gf~nVy~LdGG~~aW 393 (558)
++.+++++ |. .|+.-...+++|+++|..++.+||||-...
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 44455555 45 367788899999999999999999997643
No 115
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=53.90 E-value=19 Score=38.23 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=26.9
Q ss_pred CcCHHHHHHHHhCCCCcEEEEcCChhhHhh---CCCC
Q 008662 272 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 305 (558)
Q Consensus 272 ~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~---GHIP 305 (558)
.+...++.+.+.+ .+..+||+|+..+|+. ||||
T Consensus 137 g~gKt~Ll~~L~~-~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALAN-AGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhc-CCCeEEECCchHHhcCcccCCCC
Confidence 4677788888853 5789999999999997 7777
No 116
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=51.35 E-value=24 Score=33.79 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=34.1
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCEEE--ecc----------hHHHHHHcCCCeecc
Q 008662 353 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQG----------GFQSWVKEGLRIKEL 403 (558)
Q Consensus 353 ~kdk~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~--LdG----------G~~aWkaAGLPV~~~ 403 (558)
++..+|+|.|..|+ .+..+||.|.+.|++ |.+ +.. -++.+++.|.++...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 67889999999876 778899999999995 655 322 134566677666653
No 117
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=49.16 E-value=17 Score=33.04 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=29.4
Q ss_pred EEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHH
Q 008662 358 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 393 (558)
Q Consensus 358 IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aW 393 (558)
|+|+|.... ||..|..+|+++.-.++.+..-|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578998665 999999999887655688888888877
No 118
>PLN02727 NAD kinase
Probab=48.78 E-value=33 Score=41.64 Aligned_cols=93 Identities=12% Similarity=0.196 Sum_probs=48.5
Q ss_pred CCCcCHHHHHHHHhCCCCcEEEEcCChhhHhhCCCC----CccccccccccccCcccccchhHhhhcCchhhhhHHHHHH
Q 008662 270 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP----DLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 345 (558)
Q Consensus 270 ~g~ISp~Ea~elL~~~~~avLIDVRs~~Ef~~GHIP----GA~gai~~d~~nIPL~eL~~~l~ell~~~~~L~~ll~aaG 345 (558)
.+.++++++..+.+ ..=-.||+.|+..|- .+..+ .+....-+.+.++|+..-... .++.+++....+.
T Consensus 266 sgQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~ap------t~EqVe~fa~~l~ 337 (986)
T PLN02727 266 GGQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAP------SAEQVEKFASLVS 337 (986)
T ss_pred eCCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCC------CHHHHHHHHHHHH
Confidence 36899999988764 233589999997762 22221 111122244557776321111 0112222111110
Q ss_pred HhhhcccCCCceEEEEeCCCc-hH-HHHHHHHH
Q 008662 346 IRNLKIVQDRSKVIVMDADGT-RS-KGIARSLR 376 (558)
Q Consensus 346 I~~Lk~~~kdk~IVVyC~sG~-RS-~~AA~~L~ 376 (558)
....+||++||++|. |+ ..+|.+|.
T Consensus 338 ------~slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 338 ------DSSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ------hhcCCCEEEECCCCCchHHHHHHHHHH
Confidence 024689999999999 33 33444443
No 119
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=44.03 E-value=37 Score=34.10 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.4
Q ss_pred CceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 008662 355 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 386 (558)
Q Consensus 355 dk~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~L 386 (558)
..+|+|+|..|+ ..+.+||.|...|++ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 678999998765 889999999999984 5433
No 120
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=42.04 E-value=37 Score=34.87 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=25.2
Q ss_pred CceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 008662 355 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 386 (558)
Q Consensus 355 dk~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~L 386 (558)
.++|+|+|..|+ .+..+||.|...|| +|.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 368999998655 88999999999999 46554
No 121
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=40.66 E-value=80 Score=30.31 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=41.7
Q ss_pred hhcccCCCceEEEEeCCCc--hHHHHHHHHHH---ccCCCEEEecchHHHH----HH-cCCCeeccCccchhhhhh-hhH
Q 008662 348 NLKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW----VK-EGLRIKELKSETALTILN-EDA 416 (558)
Q Consensus 348 ~Lk~~~kdk~IVVyC~sG~--RS~~AA~~L~~---~Gf~nVy~LdGG~~aW----ka-AGLPV~~~~~~~~lel~~-e~~ 416 (558)
.++.++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++ ++ +...+.-.+-..|-++.+ -..
T Consensus 60 il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~larlvL~ 139 (155)
T PF02590_consen 60 ILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLARLVLL 139 (155)
T ss_dssp HHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHHHHHH
T ss_pred HHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHHHHHH
Confidence 3455678889999999986 88888888755 6888899999986543 22 344444333334555444 334
Q ss_pred HHHHh
Q 008662 417 EAILE 421 (558)
Q Consensus 417 ~~I~~ 421 (558)
|||=|
T Consensus 140 EQiYR 144 (155)
T PF02590_consen 140 EQIYR 144 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45544
No 122
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=39.44 E-value=33 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.1
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCC-CEEEecchHHHH
Q 008662 357 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 393 (558)
Q Consensus 357 ~IVVyC~sG~-RS~~AA~~L~~~Gf~-nVy~LdGG~~aW 393 (558)
+|+|+|.... ||..|..+|+++.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899998765 999999999877654 677888887554
No 123
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=35.22 E-value=54 Score=29.07 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=19.7
Q ss_pred CCCceEEEEeCCCc-hHHHHH--HHHHHccC
Q 008662 353 QDRSKVIVMDADGT-RSKGIA--RSLRKLGV 380 (558)
Q Consensus 353 ~kdk~IVVyC~sG~-RS~~AA--~~L~~~Gf 380 (558)
.++.+|+|||..|. ||..++ ..+...|.
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 46789999999998 775533 34455666
No 124
>PRK10126 tyrosine phosphatase; Provisional
Probab=34.64 E-value=45 Score=31.12 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.7
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHH
Q 008662 356 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 393 (558)
Q Consensus 356 k~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aW 393 (558)
.+|+|+|.... ||..|..+|+..+- ++.+...|..+|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998765 99999999998764 466667777655
No 125
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=34.64 E-value=59 Score=32.21 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=26.2
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 008662 353 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 386 (558)
Q Consensus 353 ~kdk~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~L 386 (558)
++.++|+|+|..|+ .+..+||.|...|+ +|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 45678999998754 88999999988777 57765
No 126
>PRK12361 hypothetical protein; Provisional
Probab=34.18 E-value=2.6e+02 Score=31.64 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCceEEEEeCCCc-hHHHH-HHHHH
Q 008662 353 QDRSKVIVMDADGT-RSKGI-ARSLR 376 (558)
Q Consensus 353 ~kdk~IVVyC~sG~-RS~~A-A~~L~ 376 (558)
..+.+|+|||..|. ||... +..|.
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 35689999999997 77553 33343
No 127
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=33.68 E-value=69 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.5
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHH
Q 008662 357 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 391 (558)
Q Consensus 357 ~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~ 391 (558)
+|+|+|.... ||..|..+|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6899998665 9999999999887556777766654
No 128
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=31.85 E-value=2.2e+02 Score=27.30 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.4
Q ss_pred CCCceEEEEeCCCc-hHHHH-HHHHHHc
Q 008662 353 QDRSKVIVMDADGT-RSKGI-ARSLRKL 378 (558)
Q Consensus 353 ~kdk~IVVyC~sG~-RS~~A-A~~L~~~ 378 (558)
.++.+|+|||..|. ||... +..|.+.
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999997 77653 4445443
No 129
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=31.70 E-value=47 Score=32.06 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=19.3
Q ss_pred CCCceEEEEeCCCc-hHHH--HHHHHHHccC
Q 008662 353 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 380 (558)
Q Consensus 353 ~kdk~IVVyC~sG~-RS~~--AA~~L~~~Gf 380 (558)
.+.++|+|+|+.|. ||.. +|+.|...|.
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 45679999999997 7754 4445555444
No 130
>PRK10565 putative carbohydrate kinase; Provisional
Probab=31.01 E-value=67 Score=36.39 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCCceEEEEeCCCc---hHHHHHHHHHHccCCCEEEe
Q 008662 353 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 386 (558)
Q Consensus 353 ~kdk~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~L 386 (558)
++.++|+|+|..|+ .+..+||.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 34567999998765 888999999999994 5444
No 131
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=30.64 E-value=60 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=28.4
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchHHHH
Q 008662 356 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 393 (558)
Q Consensus 356 k~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~~aW 393 (558)
++|+|+|.... ||..|..+|++..- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999997654 99999999987653 466677777655
No 132
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=30.28 E-value=2e+02 Score=32.68 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=18.7
Q ss_pred cEEEEcCChhhHhhCCCCCcc
Q 008662 288 AVLIDVRHEDLRERDGIPDLR 308 (558)
Q Consensus 288 avLIDVRs~~Ef~~GHIPGA~ 308 (558)
..+||.|+.++|..||.--|.
T Consensus 327 FFiVDcRpaeqynaGHlstaF 347 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAF 347 (669)
T ss_pred EEEEeccchhhcccccchhhh
Confidence 479999999999999998665
No 133
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=29.50 E-value=73 Score=35.75 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=31.8
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCCEEEec-c----h-----HHHHHHcCCCe
Q 008662 356 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLVQ-G----G-----FQSWVKEGLRI 400 (558)
Q Consensus 356 k~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~Ld-G----G-----~~aWkaAGLPV 400 (558)
++|+|+|..|+ .+..+|+.|...||+ |.++- + + +..|+..|.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 68999998776 778899999999995 55441 2 1 34566666554
No 134
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.58 E-value=87 Score=27.06 Aligned_cols=55 Identities=7% Similarity=0.202 Sum_probs=36.0
Q ss_pred cchhccccchhHHHhhhhhhhhhhhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHH
Q 008662 69 SSISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVD 123 (558)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d 123 (558)
+.|..++.+++++.....+..+..+.+..+-+++.++.++..+..+..+++.-+.
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~ 59 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAR 59 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777666666655544444433
No 135
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=27.51 E-value=2.4e+02 Score=27.09 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=44.4
Q ss_pred ccCCCceEEEEeCCCc--hHHHHHHHHHHc---cCCCEEEecchHHHHH-----HcCCCeeccCccchhhhhh-hhHHHH
Q 008662 351 IVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSWV-----KEGLRIKELKSETALTILN-EDAEAI 419 (558)
Q Consensus 351 ~~~kdk~IVVyC~sG~--RS~~AA~~L~~~---Gf~nVy~LdGG~~aWk-----aAGLPV~~~~~~~~lel~~-e~~~~I 419 (558)
.++++..+|+.|..|. .|...|..|... |..++..+-||-.++. .+...+.-.+-..|-++.+ -..|||
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~EQl 142 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVRVLLAEQL 142 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHHHHHHHHH
Confidence 3466777888998886 888888888543 5558999999876552 2344444333334555443 334455
Q ss_pred Hh
Q 008662 420 LE 421 (558)
Q Consensus 420 ~~ 421 (558)
-|
T Consensus 143 YR 144 (157)
T PRK00103 143 YR 144 (157)
T ss_pred HH
Confidence 44
No 136
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=27.31 E-value=84 Score=36.13 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=31.8
Q ss_pred ceEEEEeCCCc---hHHHHHHHHHHccCCCEEEec-----ch-----HHHHHHcCCCe
Q 008662 356 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLVQ-----GG-----FQSWVKEGLRI 400 (558)
Q Consensus 356 k~IVVyC~sG~---RS~~AA~~L~~~Gf~nVy~Ld-----GG-----~~aWkaAGLPV 400 (558)
++|+|+|..|+ .+..+|+.|...||+ |.++- .. +..|+..|.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 68999998876 778899999999994 55542 22 34566677654
No 137
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.37 E-value=1.6e+02 Score=26.43 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=31.8
Q ss_pred CceEEEEeCCCc----hHHHHHHHHHHccCCCEEEecch------HHHHHHcCCCee
Q 008662 355 RSKVIVMDADGT----RSKGIARSLRKLGVMRAFLVQGG------FQSWVKEGLRIK 401 (558)
Q Consensus 355 dk~IVVyC~sG~----RS~~AA~~L~~~Gf~nVy~LdGG------~~aWkaAGLPV~ 401 (558)
+-.+|++|..-. ......+.|++.|+.++.++-|| ++.|++.|+.-.
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Confidence 456777776543 33445667888899888888887 446777885433
No 138
>PRK13530 arsenate reductase; Provisional
Probab=24.57 E-value=1.2e+02 Score=27.84 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=26.8
Q ss_pred ceEEEEeCCCc-hHHHHHHHHHHccCCCEEEecchH
Q 008662 356 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 390 (558)
Q Consensus 356 k~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~LdGG~ 390 (558)
++|+|+|.... ||..|..+++.++-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 57999998765 999999888876545676766665
No 139
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=24.48 E-value=1.1e+02 Score=30.89 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.3
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHccCCCEEEe
Q 008662 357 KVIVMDADGT-RSKGIARSLRKLGVMRAFLV 386 (558)
Q Consensus 357 ~IVVyC~sG~-RS~~AA~~L~~~Gf~nVy~L 386 (558)
.+-++|.+.+ ||..|-..|++.|| +|..+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 5778999876 99999999999999 67765
No 140
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=23.68 E-value=3.9e+02 Score=27.23 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=21.2
Q ss_pred CceEEEEeCCCchHHHHHHHH-HHccCC
Q 008662 355 RSKVIVMDADGTRSKGIARSL-RKLGVM 381 (558)
Q Consensus 355 dk~IVVyC~sG~RS~~AA~~L-~~~Gf~ 381 (558)
.+..+++|.+..++...+..| ++.||+
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 588999999998887655554 778985
No 141
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.03 E-value=1e+02 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=20.1
Q ss_pred eEEEEeCCCchHHHHH-HH----HHHccCCCEEEecch
Q 008662 357 KVIVMDADGTRSKGIA-RS----LRKLGVMRAFLVQGG 389 (558)
Q Consensus 357 ~IVVyC~sG~RS~~AA-~~----L~~~Gf~nVy~LdGG 389 (558)
+|++.|.+|..+...+ .. +++.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999998554444 44 5677863 4444333
No 142
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=21.89 E-value=63 Score=38.38 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=45.3
Q ss_pred hhhhhhhHHHhhHhhhhhhhhhHhhhHHHHHHHhhcccc-ccccccccccccc---eeccccchhhh
Q 008662 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSIDQTGGSAGSK---LTNFSTDLKEA 154 (558)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~d~~~~g~~-~~~~~~~~~~~~~---~t~astgl~e~ 154 (558)
.|+-++++..- .+.+...+..|.+|||.+|+|+.| .. ..|.++..+...| +.++|+|..+.
T Consensus 266 ~IyA~GD~a~~-~~~~~gl~~~a~~qa~vaA~ni~g-~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~ 330 (785)
T TIGR02374 266 DIYAVGECAEH-NGRVYGLVAPLYEQAKVLADHICG-VECEEYEGSDLSAKLKLLGVDVWSAGDAQE 330 (785)
T ss_pred CEEEeeeccee-CCcccccHHHHHHHHHHHHHHhcC-CCCcCCCCCccceEEEECCcceEecccCCC
Confidence 35666666532 233444577789999999999995 55 7899999998888 56789997654
No 143
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.69 E-value=1.3e+02 Score=26.40 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=21.3
Q ss_pred CCceEEEEeCCCchH-HHHHHHHHHccCC
Q 008662 354 DRSKVIVMDADGTRS-KGIARSLRKLGVM 381 (558)
Q Consensus 354 kdk~IVVyC~sG~RS-~~AA~~L~~~Gf~ 381 (558)
.+++++|.-++..++ ...++.|+.+|+.
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 467899998888766 6778888999985
No 144
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.56 E-value=6.8e+02 Score=23.14 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCceEEEEeCCCc----hHHHHHHHHHHccCCCEEEecch------HHHHHHcCCCeec
Q 008662 354 DRSKVIVMDADGT----RSKGIARSLRKLGVMRAFLVQGG------FQSWVKEGLRIKE 402 (558)
Q Consensus 354 kdk~IVVyC~sG~----RS~~AA~~L~~~Gf~nVy~LdGG------~~aWkaAGLPV~~ 402 (558)
.+-.+|++|..-. ........|++.|..++.++-|| +..|++.|..-.-
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 4667888887643 33456667888898788888898 5688888875444
No 145
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=20.30 E-value=82 Score=30.28 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=25.2
Q ss_pred CCCceEEEEeCCCc-hHHHHHHHHHHc-cCCCEEEecchHHHHHH
Q 008662 353 QDRSKVIVMDADGT-RSKGIARSLRKL-GVMRAFLVQGGFQSWVK 395 (558)
Q Consensus 353 ~kdk~IVVyC~sG~-RS~~AA~~L~~~-Gf~nVy~LdGG~~aWka 395 (558)
+...||+|+|..|. |+..+...|++. |. .+..=++.++.
T Consensus 89 ~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W----~~~~i~~Ey~~ 129 (164)
T PF03162_consen 89 PRNYPVLIHCNHGKDRTGLVVGCLRKLQGW----SLSSIFDEYRR 129 (164)
T ss_dssp GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-----HHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcchhhHHHHHHHHcCC----CHHHHHHHHHH
Confidence 45789999999997 888887777753 43 24444556655
Done!