Query 008663
Match_columns 558
No_of_seqs 513 out of 2825
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 15:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 1.1E-82 2.3E-87 656.2 40.2 419 45-552 9-445 (452)
2 PLN02533 probable purple acid 100.0 4.8E-78 1E-82 642.4 48.1 379 81-547 39-421 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 7.3E-46 1.6E-50 379.4 30.1 276 207-544 3-294 (294)
4 PTZ00422 glideosome-associated 100.0 1.2E-32 2.7E-37 285.0 28.1 256 208-547 26-332 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 6.8E-31 1.5E-35 266.6 25.9 243 209-528 1-274 (277)
6 PF09423 PhoD: PhoD-like phosp 100.0 2.4E-28 5.2E-33 264.6 32.3 314 94-427 5-382 (453)
7 cd07395 MPP_CSTP1 Homo sapiens 100.0 5.5E-27 1.2E-31 236.1 23.8 205 207-448 3-236 (262)
8 COG3540 PhoD Phosphodiesterase 100.0 2E-27 4.4E-32 244.1 20.8 310 94-425 45-421 (522)
9 KOG2679 Purple (tartrate-resis 99.9 7.7E-24 1.7E-28 203.2 20.7 202 208-448 43-275 (336)
10 cd07402 MPP_GpdQ Enterobacter 99.9 5.2E-23 1.1E-27 204.1 20.0 192 210-449 1-213 (240)
11 cd07396 MPP_Nbla03831 Homo sap 99.9 4.9E-23 1.1E-27 208.0 18.3 197 209-448 1-246 (267)
12 PRK11148 cyclic 3',5'-adenosin 99.9 9.3E-21 2E-25 192.2 23.3 191 208-448 14-225 (275)
13 cd07401 MPP_TMEM62_N Homo sapi 99.9 2.6E-20 5.7E-25 186.8 19.0 194 211-428 2-216 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.8 1.6E-18 3.4E-23 169.4 14.1 150 209-427 1-166 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 1.2E-17 2.5E-22 171.3 16.9 193 214-426 43-265 (296)
16 PF00149 Metallophos: Calcineu 99.7 4.8E-17 1E-21 149.4 9.9 191 209-422 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 9E-16 2E-20 153.6 15.9 172 225-425 35-231 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.6 7.6E-15 1.6E-19 145.2 17.4 191 211-446 1-226 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.6 3.5E-15 7.7E-20 144.1 13.9 150 208-426 2-180 (199)
20 TIGR03767 P_acnes_RR metalloph 99.6 1.1E-14 2.4E-19 153.8 16.6 94 329-425 290-395 (496)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.6 2.3E-14 5.1E-19 136.2 16.1 167 211-423 1-174 (188)
22 TIGR03729 acc_ester putative p 99.6 1.5E-14 3.2E-19 143.8 14.7 176 210-423 1-222 (239)
23 COG1409 Icc Predicted phosphoh 99.5 2.1E-13 4.5E-18 138.9 16.3 179 209-422 1-193 (301)
24 cd07400 MPP_YydB Bacillus subt 99.5 2.4E-13 5.3E-18 124.0 12.9 132 211-445 1-144 (144)
25 PF14008 Metallophos_C: Iron/z 99.5 4.7E-14 1E-18 109.7 6.5 43 496-540 20-62 (62)
26 cd07385 MPP_YkuE_C Bacillus su 99.4 1.7E-12 3.6E-17 127.3 14.7 187 208-448 1-206 (223)
27 cd07404 MPP_MS158 Microscilla 99.4 5.4E-13 1.2E-17 124.9 9.6 145 211-425 1-152 (166)
28 TIGR03768 RPA4764 metallophosp 99.4 7E-12 1.5E-16 131.3 17.1 94 329-423 291-412 (492)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.4 2.9E-12 6.3E-17 125.3 13.4 185 210-425 1-204 (223)
30 cd07389 MPP_PhoD Bacillus subt 99.4 9E-12 1.9E-16 122.8 15.9 178 210-425 1-207 (228)
31 KOG1432 Predicted DNA repair e 99.4 6.6E-11 1.4E-15 118.4 21.6 211 207-448 52-330 (379)
32 cd07388 MPP_Tt1561 Thermus the 99.4 3.1E-11 6.8E-16 118.1 18.6 176 208-420 4-189 (224)
33 PRK11340 phosphodiesterase Yae 99.4 2.1E-11 4.5E-16 123.5 16.8 164 208-428 49-220 (271)
34 cd00838 MPP_superfamily metall 99.3 4.4E-11 9.5E-16 105.4 11.8 116 212-426 1-119 (131)
35 cd07397 MPP_DevT Myxococcus xa 99.1 3.2E-09 7E-14 104.3 18.0 197 209-443 1-231 (238)
36 cd07379 MPP_239FB Homo sapiens 99.1 7.9E-10 1.7E-14 99.9 11.7 116 210-423 1-117 (135)
37 PF12850 Metallophos_2: Calcin 99.0 1.4E-09 3E-14 100.0 10.4 137 209-448 1-139 (156)
38 COG1408 Predicted phosphohydro 99.0 5.8E-09 1.3E-13 105.7 13.0 75 208-306 44-121 (284)
39 PRK05340 UDP-2,3-diacylglucosa 98.9 9.2E-09 2E-13 102.4 13.3 198 209-448 1-221 (241)
40 cd08166 MPP_Cdc1_like_1 unchar 98.9 7.8E-09 1.7E-13 98.5 11.4 40 377-426 112-151 (195)
41 cd00841 MPP_YfcE Escherichia c 98.9 8.2E-09 1.8E-13 95.3 10.2 57 375-448 76-132 (155)
42 cd07394 MPP_Vps29 Homo sapiens 98.8 3.7E-07 8.1E-12 86.6 19.0 40 401-448 97-136 (178)
43 KOG3770 Acid sphingomyelinase 98.8 1.2E-07 2.5E-12 102.1 16.6 179 225-425 199-407 (577)
44 cd08165 MPP_MPPE1 human MPPE1 98.8 3.2E-08 6.9E-13 91.8 10.6 52 231-303 35-89 (156)
45 TIGR00040 yfcE phosphoesterase 98.8 7.2E-08 1.6E-12 89.5 12.1 37 209-245 1-39 (158)
46 cd07403 MPP_TTHA0053 Thermus t 98.7 6.1E-08 1.3E-12 87.0 10.1 49 376-425 58-106 (129)
47 cd07384 MPP_Cdc1_like Saccharo 98.7 1.2E-07 2.6E-12 89.3 11.9 32 377-426 119-150 (171)
48 TIGR01854 lipid_A_lpxH UDP-2,3 98.7 4.9E-07 1.1E-11 89.4 16.8 45 400-448 175-219 (231)
49 COG1768 Predicted phosphohydro 98.7 1.9E-07 4.2E-12 85.6 12.5 60 373-443 158-217 (230)
50 PF14582 Metallophos_3: Metall 98.7 2.7E-07 5.8E-12 88.3 13.1 194 208-423 5-219 (255)
51 COG2129 Predicted phosphoester 98.6 6.2E-07 1.3E-11 86.0 14.2 191 208-445 3-203 (226)
52 cd00845 MPP_UshA_N_like Escher 98.6 4.6E-07 1E-11 90.6 13.2 175 209-425 1-209 (252)
53 cd08164 MPP_Ted1 Saccharomyces 98.6 1.3E-07 2.8E-12 90.1 8.0 32 377-426 129-160 (193)
54 cd07406 MPP_CG11883_N Drosophi 98.5 1.7E-06 3.8E-11 86.9 15.0 191 209-448 1-225 (257)
55 cd07410 MPP_CpdB_N Escherichia 98.5 3.3E-06 7.1E-11 85.9 17.2 189 209-424 1-232 (277)
56 cd07398 MPP_YbbF-LpxH Escheric 98.5 6.8E-07 1.5E-11 87.1 11.4 194 212-445 1-216 (217)
57 PRK09453 phosphodiesterase; Pr 98.5 1.6E-06 3.4E-11 82.5 12.9 75 209-303 1-76 (182)
58 TIGR00583 mre11 DNA repair pro 98.5 8.5E-06 1.9E-10 86.7 19.6 40 208-247 3-55 (405)
59 COG0622 Predicted phosphoester 98.3 2.8E-05 6E-10 73.1 16.2 38 209-246 2-40 (172)
60 cd07411 MPP_SoxB_N Thermus the 98.3 1.6E-05 3.4E-10 80.3 14.9 176 226-448 41-240 (264)
61 cd07382 MPP_DR1281 Deinococcus 98.3 3.9E-05 8.5E-10 76.7 17.2 192 210-451 1-203 (255)
62 COG0420 SbcD DNA repair exonuc 98.3 5.3E-06 1.2E-10 88.5 11.6 74 209-304 1-89 (390)
63 cd07408 MPP_SA0022_N Staphyloc 98.3 1.5E-05 3.3E-10 80.1 14.0 182 209-425 1-216 (257)
64 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.2 3.2E-05 6.9E-10 77.8 15.9 188 211-427 1-234 (262)
65 cd07412 MPP_YhcR_N Bacillus su 98.2 4.1E-05 9E-10 78.3 15.4 83 359-448 178-262 (288)
66 cd07407 MPP_YHR202W_N Saccharo 98.1 0.0002 4.3E-09 72.9 19.0 202 208-449 5-251 (282)
67 TIGR00282 metallophosphoestera 98.1 0.0002 4.3E-09 72.0 18.5 194 209-451 1-206 (266)
68 PRK09419 bifunctional 2',3'-cy 98.0 0.00014 3.1E-09 87.8 18.8 184 207-423 659-883 (1163)
69 cd07409 MPP_CD73_N CD73 ecto-5 98.0 5.5E-05 1.2E-09 77.1 12.9 157 226-423 40-219 (281)
70 COG2908 Uncharacterized protei 98.0 8.2E-05 1.8E-09 72.4 12.3 41 399-447 176-216 (237)
71 PRK04036 DNA polymerase II sma 98.0 0.00015 3.3E-09 79.7 15.7 204 207-448 242-470 (504)
72 KOG3662 Cell division control 97.9 7E-05 1.5E-09 78.5 11.2 114 208-352 48-185 (410)
73 cd07424 MPP_PrpA_PrpB PrpA and 97.9 1.4E-05 3.1E-10 77.6 5.5 37 210-246 2-40 (207)
74 cd07405 MPP_UshA_N Escherichia 97.9 0.0004 8.7E-09 70.9 15.5 188 209-424 1-223 (285)
75 TIGR00619 sbcd exonuclease Sbc 97.8 5.2E-05 1.1E-09 76.1 7.9 73 209-303 1-88 (253)
76 cd07390 MPP_AQ1575 Aquifex aeo 97.8 0.00015 3.2E-09 68.1 10.0 17 409-425 124-140 (168)
77 cd07386 MPP_DNA_pol_II_small_a 97.8 0.00028 6.2E-09 70.2 12.3 198 212-447 2-220 (243)
78 COG0737 UshA 5'-nucleotidase/2 97.7 0.00078 1.7E-08 74.7 16.4 185 207-422 25-247 (517)
79 cd07425 MPP_Shelphs Shewanella 97.7 7.6E-05 1.6E-09 72.6 6.9 24 401-424 158-181 (208)
80 PRK10966 exonuclease subunit S 97.7 0.00013 2.9E-09 78.1 8.4 73 209-303 1-87 (407)
81 PHA02546 47 endonuclease subun 97.6 0.00013 2.9E-09 76.3 8.1 74 209-303 1-89 (340)
82 TIGR01530 nadN NAD pyrophospha 97.6 0.0012 2.5E-08 73.7 15.8 114 293-423 84-219 (550)
83 PRK09558 ushA bifunctional UDP 97.6 0.0012 2.5E-08 73.9 15.3 186 207-423 33-258 (551)
84 COG4186 Predicted phosphoester 97.5 0.0016 3.4E-08 59.0 12.2 38 376-421 110-147 (186)
85 PRK11439 pphA serine/threonine 97.5 0.00011 2.5E-09 71.9 4.6 37 210-246 18-56 (218)
86 cd08162 MPP_PhoA_N Synechococc 97.4 0.0017 3.7E-08 67.1 12.6 39 371-423 206-245 (313)
87 KOG2863 RNA lariat debranching 97.4 0.0019 4.2E-08 65.7 12.0 182 209-421 1-229 (456)
88 cd07380 MPP_CWF19_N Schizosacc 97.2 0.0013 2.9E-08 60.4 7.8 50 376-425 71-126 (150)
89 PRK11907 bifunctional 2',3'-cy 97.1 0.012 2.6E-07 68.0 16.3 59 359-422 296-354 (814)
90 cd07391 MPP_PF1019 Pyrococcus 97.1 0.00087 1.9E-08 63.1 6.0 51 231-303 38-88 (172)
91 PRK09419 bifunctional 2',3'-cy 97.0 0.012 2.7E-07 71.4 16.0 59 361-424 223-282 (1163)
92 PHA02239 putative protein phos 96.8 0.0023 5.1E-08 63.4 6.4 70 209-303 1-73 (235)
93 PRK09418 bifunctional 2',3'-cy 96.8 0.051 1.1E-06 62.8 17.5 48 371-424 243-291 (780)
94 TIGR00024 SbcD_rel_arch putati 96.6 0.0051 1.1E-07 60.6 7.0 70 209-303 15-102 (225)
95 COG1311 HYS2 Archaeal DNA poly 96.6 0.055 1.2E-06 57.9 14.7 89 207-305 224-323 (481)
96 PF13277 YmdB: YmdB-like prote 96.5 0.044 9.6E-07 54.2 12.7 186 213-451 2-201 (253)
97 PRK09420 cpdB bifunctional 2', 96.4 0.076 1.7E-06 60.4 15.8 56 361-422 207-263 (649)
98 TIGR01390 CycNucDiestase 2',3' 96.4 0.086 1.9E-06 59.8 15.9 46 371-422 194-240 (626)
99 PRK00166 apaH diadenosine tetr 96.4 0.0052 1.1E-07 62.3 5.5 66 210-303 2-69 (275)
100 cd07423 MPP_PrpE Bacillus subt 96.3 0.0046 1E-07 61.2 4.9 68 210-303 2-80 (234)
101 COG5555 Cytolysin, a secreted 96.3 0.0097 2.1E-07 59.0 6.5 145 283-428 163-340 (392)
102 KOG2310 DNA repair exonuclease 96.2 0.031 6.7E-07 60.1 10.4 43 207-249 12-67 (646)
103 cd07387 MPP_PolD2_C PolD2 (DNA 96.2 0.052 1.1E-06 54.4 11.3 188 211-425 2-218 (257)
104 PRK13625 bis(5'-nucleosyl)-tet 96.1 0.012 2.6E-07 58.7 6.6 37 210-246 2-48 (245)
105 cd07381 MPP_CapA CapA and rela 96.1 0.098 2.1E-06 51.8 12.9 134 282-425 71-222 (239)
106 PRK09968 serine/threonine-spec 95.8 0.011 2.4E-07 57.9 4.9 37 210-246 16-54 (218)
107 PF00041 fn3: Fibronectin type 95.7 0.041 8.9E-07 44.2 7.1 76 85-186 2-77 (85)
108 COG1692 Calcineurin-like phosp 95.4 0.69 1.5E-05 45.4 15.2 193 209-448 1-202 (266)
109 smart00854 PGA_cap Bacterial c 95.3 0.28 6.2E-06 48.6 12.9 59 361-425 162-220 (239)
110 cd07422 MPP_ApaH Escherichia c 95.3 0.021 4.6E-07 57.3 4.7 64 212-303 2-67 (257)
111 cd07413 MPP_PA3087 Pseudomonas 95.2 0.026 5.6E-07 55.5 4.9 67 211-303 1-76 (222)
112 cd00144 MPP_PPP_family phospho 95.1 0.025 5.3E-07 55.3 4.5 34 213-246 2-36 (225)
113 cd07421 MPP_Rhilphs Rhilph pho 95.1 0.034 7.3E-07 56.5 5.4 37 210-246 3-46 (304)
114 COG1407 Predicted ICC-like pho 95.0 0.052 1.1E-06 53.2 6.3 73 209-303 20-110 (235)
115 TIGR00668 apaH bis(5'-nucleosy 94.7 0.038 8.2E-07 55.9 4.6 37 210-246 2-40 (279)
116 PF09587 PGA_cap: Bacterial ca 93.6 1.4 2.9E-05 44.0 13.2 64 357-426 169-232 (250)
117 KOG4419 5' nucleotidase [Nucle 93.2 0.64 1.4E-05 51.1 10.6 60 354-424 210-271 (602)
118 cd07416 MPP_PP2B PP2B, metallo 92.1 0.22 4.7E-06 51.4 5.1 23 399-421 222-244 (305)
119 KOG3325 Membrane coat complex 91.2 2 4.3E-05 39.0 9.4 39 400-446 97-135 (183)
120 cd07420 MPP_RdgC Drosophila me 91.0 0.31 6.8E-06 50.5 5.0 23 399-421 253-275 (321)
121 smart00156 PP2Ac Protein phosp 91.0 0.4 8.7E-06 48.6 5.7 22 399-420 200-221 (271)
122 cd07414 MPP_PP1_PPKL PP1, PPKL 89.2 0.46 9.9E-06 48.7 4.4 23 399-421 222-244 (293)
123 cd07415 MPP_PP2A_PP4_PP6 PP2A, 89.0 0.6 1.3E-05 47.7 5.1 23 399-421 214-236 (285)
124 PTZ00239 serine/threonine prot 88.8 0.6 1.3E-05 48.1 5.0 23 399-421 215-237 (303)
125 cd07418 MPP_PP7 PP7, metalloph 88.3 0.76 1.6E-05 48.6 5.4 21 399-419 273-293 (377)
126 PTZ00480 serine/threonine-prot 88.1 0.61 1.3E-05 48.3 4.5 23 399-421 231-253 (320)
127 PTZ00244 serine/threonine-prot 87.4 0.73 1.6E-05 47.3 4.5 23 399-421 224-246 (294)
128 KOG4221 Receptor mediating net 86.2 2.5 5.3E-05 50.2 8.3 34 168-201 677-713 (1381)
129 KOG0196 Tyrosine kinase, EPH ( 86.0 3.7 8.1E-05 46.9 9.2 38 164-201 497-537 (996)
130 cd07417 MPP_PP5_C PP5, C-termi 84.4 1.6 3.6E-05 45.2 5.4 23 399-421 233-255 (316)
131 cd07419 MPP_Bsu1_C Arabidopsis 83.7 2 4.4E-05 44.4 5.7 21 399-419 242-262 (311)
132 cd00063 FN3 Fibronectin type 3 83.5 10 0.00022 29.5 8.8 22 164-185 56-77 (93)
133 KOG3947 Phosphoesterases [Gene 81.1 27 0.00059 35.2 12.0 33 208-246 61-94 (305)
134 smart00060 FN3 Fibronectin typ 77.9 17 0.00036 27.2 8.0 23 164-186 56-78 (83)
135 PF04042 DNA_pol_E_B: DNA poly 77.0 1.4 3E-05 42.5 1.8 83 211-305 1-93 (209)
136 KOG4258 Insulin/growth factor 73.8 13 0.00029 42.8 8.4 123 84-218 487-624 (1025)
137 KOG3513 Neural cell adhesion m 73.1 20 0.00044 42.6 10.1 93 85-202 822-917 (1051)
138 KOG4221 Receptor mediating net 70.0 28 0.00061 41.8 10.2 38 164-201 573-613 (1381)
139 PF07353 Uroplakin_II: Uroplak 57.1 12 0.00026 34.3 3.4 36 167-202 104-141 (184)
140 PTZ00235 DNA polymerase epsilo 56.5 70 0.0015 32.7 9.1 82 208-303 27-122 (291)
141 PRK10301 hypothetical protein; 43.9 2.3E+02 0.005 25.0 11.8 35 163-197 86-122 (124)
142 KOG0374 Serine/threonine speci 40.4 24 0.00052 36.8 3.0 22 399-420 233-254 (331)
143 KOG0372 Serine/threonine speci 35.6 59 0.0013 32.3 4.6 34 211-246 45-81 (303)
144 PF13253 DUF4044: Protein of u 33.1 70 0.0015 21.8 3.3 23 15-37 8-32 (35)
145 KOG0371 Serine/threonine prote 29.9 63 0.0014 32.4 3.8 34 211-246 62-98 (319)
146 cd02852 Isoamylase_N_term Isoa 29.9 67 0.0015 27.8 3.8 23 162-184 48-70 (119)
147 cd02856 Glycogen_debranching_e 29.7 66 0.0014 27.1 3.6 23 162-184 44-66 (103)
148 cd02853 MTHase_N_term Maltooli 27.8 71 0.0015 25.8 3.3 20 163-183 40-59 (85)
149 cd01987 USP_OKCHK USP domain i 26.8 3.6E+02 0.0078 22.7 7.9 23 399-421 74-96 (124)
150 PF09294 Interfer-bind: Interf 25.6 57 0.0012 27.3 2.4 19 166-184 68-86 (106)
151 cd02860 Pullulanase_N_term Pul 25.5 92 0.002 26.0 3.7 24 162-185 46-69 (100)
152 KOG3513 Neural cell adhesion m 21.9 5E+02 0.011 31.5 9.7 93 84-203 616-716 (1051)
153 KOG0373 Serine/threonine speci 21.3 1.4E+02 0.0031 29.1 4.4 33 211-246 48-84 (306)
154 PF10179 DUF2369: Uncharacteri 21.1 82 0.0018 32.4 2.9 23 160-182 10-32 (300)
155 PF05582 Peptidase_U57: YabG p 20.8 95 0.0021 31.5 3.2 27 396-422 140-167 (287)
156 TIGR02855 spore_yabG sporulati 20.6 79 0.0017 31.9 2.6 50 359-421 115-165 (283)
157 PF01784 NIF3: NIF3 (NGG1p int 20.4 1.2E+02 0.0025 30.1 3.9 42 377-420 56-97 (241)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-82 Score=656.22 Aligned_cols=419 Identities=39% Similarity=0.633 Sum_probs=359.9
Q ss_pred cccCCCCCCccccCCCcCCCCCCCCCCCCCCcccCCCCCCCCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCc
Q 008663 45 PTTLDGPFKPVTIPLDESFRGNAIDLPDTDPRVQRTVEGFEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVV 124 (558)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~qi~lt~~~~p~s~~V~W~T~~~~~g~~~~~~~p~~~~ 124 (558)
+....|+..+..+++.++++-....++...|+ ..+.|||||||+++..++|+|+|.|.+.. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~peQvhlS~~~~~~~m~VswvT~~~~-------------~ 70 (452)
T KOG1378|consen 9 SEINPKHTLHDINPLPGTLHLLSESEQLTFPS-----VVNSPEQVHLSFTDNLNEMRVSWVTGDGE-------------E 70 (452)
T ss_pred eeccCCCccccccccCcccccccccccccCcc-----cCCCCCeEEEeccCCCCcEEEEEeCCCCC-------------C
Confidence 34455677778888888877777776666654 34569999999999888999999998752 3
Q ss_pred cEEEEeccCCCCceE-EEeEEEEeeeecccCCccccccCcEEEEEeCCCCCCCEEEEEEecCCCCCccceeEEEcCCCCC
Q 008663 125 SVVRYGTRRSQLNRK-ATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSS 203 (558)
Q Consensus 125 ~~V~yg~~~~~~~~~-~~g~~~~y~~~~~~~g~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~~ 203 (558)
++|+||+..++.... +.+.+..++..|.. .++++|++|+|.|++|+|+|+||||||++. .||++|+|+|+| +
T Consensus 71 ~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~---~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~--~wS~~f~F~t~p--~ 143 (452)
T KOG1378|consen 71 NVVRYGEVKDKLDNSAARGMTEAWTDGYAN---GWRDSGYIHDAVMKNLEPNTRYYYQVGSDL--KWSEIFSFKTPP--G 143 (452)
T ss_pred ceEEEeecCCCccccccccceEEEeccccc---ccceeeeEeeeeecCCCCCceEEEEeCCCC--CcccceEeECCC--C
Confidence 799999887664433 35666666655433 247899999999999999999999999987 599999999999 2
Q ss_pred CCCCCeEEEEEecCCCCCChHHHHHHHHhC-CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh-HHHHHHH
Q 008663 204 STSYPSRIAIVGDVGLTYNTTSTVSHMISN-RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ-PRWDYWG 281 (558)
Q Consensus 204 ~~~~~~rfavigD~g~~~~~~~~l~~l~~~-~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~-~~wd~~~ 281 (558)
+..+.+|+++||+|.+.....++....+. ++|+|||+||++|++.+ + .+||+|.
T Consensus 144 -~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~-----------------------~n~~wD~f~ 199 (452)
T KOG1378|consen 144 -QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGY-----------------------SNWQWDEFG 199 (452)
T ss_pred -ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCC-----------------------CccchHHHH
Confidence 22489999999999998777777777665 59999999999998743 2 4899999
Q ss_pred HhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccC--CCcHHHHH
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--DKSGDQYK 359 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~--~~~~~Q~~ 359 (558)
++++++++.+|+|++.||||++..... .|..|.+||.||.+++++..++||||++|++|||+|+|+.++ .+..+|++
T Consensus 200 r~vEp~As~vPymv~~GNHE~d~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~ 278 (452)
T KOG1378|consen 200 RQVEPIASYVPYMVCSGNHEIDWPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQ 278 (452)
T ss_pred hhhhhhhccCceEEecccccccCCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHH
Confidence 999999999999999999999866544 799999999999998888888999999999999999999885 45789999
Q ss_pred HHHHHHhhcccCCCCEEEEEeCCcccccCCC-cccchH--HHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCcc---
Q 008663 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKA-HYREAE--CMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTL--- 433 (558)
Q Consensus 360 WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~-~~~~~~--~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~--- 433 (558)
||+++|++++|+++||+|++.|+|||++... ++++.+ .+|..||+||.+++||++|+||+|+|||++|++|.++
T Consensus 279 WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~ 358 (452)
T KOG1378|consen 279 WLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTG 358 (452)
T ss_pred HHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeecc
Confidence 9999999999877999999999999999865 666655 8999999999999999999999999999999999877
Q ss_pred -------CCCCcEEEEeCCCcccCCcCCCCCCCCCCCCCCCCCCCeecCCCcccccccccCCCCCCCCCCCCCCccceee
Q 008663 434 -------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRE 506 (558)
Q Consensus 434 -------~~~g~vyiv~G~gG~~~~~~~~~~d~~~~~p~~~~~~~~~~~g~~~~~~n~t~~p~~~~~~~~~~p~~s~~~~ 506 (558)
++++|+||++|+||+.|..+... .+||+||+||+
T Consensus 359 ~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~---------------------------------------~~~p~~Sa~R~ 399 (452)
T KOG1378|consen 359 WGPVHLVDGMAPIYITVGDGGNHEHLDPFS---------------------------------------SPQPEWSAFRE 399 (452)
T ss_pred CCcccccCCCCCEEEEEccCCcccccCccc---------------------------------------CCCCccccccc
Confidence 89999999999999998765210 26999999999
Q ss_pred CCcceEEEEEecCCeEEEEEEEecCCcceeeeEEEEEeCCCCCCCC
Q 008663 507 SSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPDLCPVQ 552 (558)
Q Consensus 507 ~~~G~~~l~v~n~t~~~~~~~~~~d~~~~~~D~~~i~~~~~~~~~~ 552 (558)
.+|||++|+++|.||++|+|+|++|.++++.|+|||+|+...|..+
T Consensus 400 ~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~~ 445 (452)
T KOG1378|consen 400 GDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVVG 445 (452)
T ss_pred ccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCccccc
Confidence 9999999999999999999999999889999999999998876543
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=4.8e-78 Score=642.39 Aligned_cols=379 Identities=45% Similarity=0.826 Sum_probs=330.4
Q ss_pred CCCCCCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEeccCCCCceEEEeEEEEeeeecccCCccccc
Q 008663 81 VEGFEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYT 160 (558)
Q Consensus 81 ~~~~~P~qi~lt~~~~p~s~~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~~~~g~~~~~ 160 (558)
.....|+||||++++ +++|+|+|+|.+. .++.|+||++.+.+..++.|++.+|+.. ..|.
T Consensus 39 ~~~~~P~qvhls~~~-~~~m~V~W~T~~~-------------~~~~V~yG~~~~~l~~~a~g~~~~~~~~------~~~~ 98 (427)
T PLN02533 39 DDPTHPDQVHISLVG-PDKMRISWITQDS-------------IPPSVVYGTVSGKYEGSANGTSSSYHYL------LIYR 98 (427)
T ss_pred CCCCCCceEEEEEcC-CCeEEEEEECCCC-------------CCCEEEEecCCCCCcceEEEEEEEEecc------cccc
Confidence 456789999999998 9999999999763 2478999999999999999998888632 2467
Q ss_pred cCcEEEEEeCCCCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEecCCCCCChHHHHHHHHhCCCCEEEE
Q 008663 161 SGIIHHVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISNRPDLILL 240 (558)
Q Consensus 161 ~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~~~~~~~~rfavigD~g~~~~~~~~l~~l~~~~pDfvl~ 240 (558)
++++|+|+|+||+|+|+|||||+.. .+|++++|||+|.. .++||+++||+|.......+++++.+.+||||||
T Consensus 99 ~g~iH~v~l~~L~p~T~Y~Yrvg~~---~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~ 171 (427)
T PLN02533 99 SGQINDVVIGPLKPNTVYYYKCGGP---SSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFIL 171 (427)
T ss_pred CCeEEEEEeCCCCCCCEEEEEECCC---CCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEE
Confidence 8999999999999999999999964 46899999999863 3799999999997766667889998889999999
Q ss_pred cCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCceeecCCCccccCc--cchhhHhhhhcc
Q 008663 241 VGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQA--ENRTFVAYTSRF 318 (558)
Q Consensus 241 ~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~--~~~~~~~y~~~f 318 (558)
+||++|++. |+.+|+.|.+.++++.+.+|+|+++||||..... ....|..|..+|
T Consensus 172 ~GDl~y~~~-----------------------~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf 228 (427)
T PLN02533 172 PGDLSYANF-----------------------YQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARW 228 (427)
T ss_pred cCccccccc-----------------------hHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcc
Confidence 999999631 3578999999999999999999999999986432 234678899999
Q ss_pred CCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccc--hH
Q 008663 319 AFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE--AE 396 (558)
Q Consensus 319 ~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~--~~ 396 (558)
.||..+.+...+.||||++|++|||+||++.++....+|++||+++|++++++++||+|+++|+|+|++...+..+ ..
T Consensus 229 ~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~ 308 (427)
T PLN02533 229 RMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESV 308 (427)
T ss_pred cCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhH
Confidence 9998776667789999999999999999999888889999999999999988889999999999999876443222 34
Q ss_pred HHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcccCCcCCCCCCCCCCCCCCCCCCCeecCC
Q 008663 397 CMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGG 476 (558)
Q Consensus 397 ~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~~~~~~~~~~d~~~~~p~~~~~~~~~~~g 476 (558)
.+|+.|++||++++||++|+||+|.|||++|+++++.+++|++||++|+||+.|++...
T Consensus 309 ~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~--------------------- 367 (427)
T PLN02533 309 GMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATK--------------------- 367 (427)
T ss_pred HHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccc---------------------
Confidence 57899999999999999999999999999999999999999999999999998865310
Q ss_pred CcccccccccCCCCCCCCCCCCCCccceeeCCcceEEEEEecCCeEEEEEEEecCCcceeeeEEEEEeCCC
Q 008663 477 GKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPD 547 (558)
Q Consensus 477 ~~~~~~n~t~~p~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~~~d~~~~~~D~~~i~~~~~ 547 (558)
| +.++|+||+||+.+|||++|+|.|.|||+|+|+|++|+++.+.|+|||.|...
T Consensus 368 ----------------~-~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~ 421 (427)
T PLN02533 368 ----------------Y-IDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLT 421 (427)
T ss_pred ----------------c-CCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccC
Confidence 1 14689999999999999999999999999999999988778999999999754
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=7.3e-46 Score=379.42 Aligned_cols=276 Identities=45% Similarity=0.774 Sum_probs=220.9
Q ss_pred CCeEEEEEecCCCC-CChHHHHHHHHh--CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHh
Q 008663 207 YPSRIAIVGDVGLT-YNTTSTVSHMIS--NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRY 283 (558)
Q Consensus 207 ~~~rfavigD~g~~-~~~~~~l~~l~~--~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~ 283 (558)
.++||+++||+|.. ....++++++.+ .+|||||++||++|+.. . ..+.+|+.|.+.
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~-----~----------------~~~~~~~~~~~~ 61 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADG-----Y----------------NNGSRWDTFMRQ 61 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcC-----C----------------ccchhHHHHHHH
Confidence 37999999999973 456778888877 68999999999998642 1 012579999999
Q ss_pred hhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccC---CCcHHHHHH
Q 008663 284 MQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF---DKSGDQYKW 360 (558)
Q Consensus 284 l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~---~~~~~Q~~W 360 (558)
++++...+|+++++||||............+..++.++........+.||+|++|++|||+|||+... ..+.+|++|
T Consensus 62 ~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~W 141 (294)
T cd00839 62 IEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDW 141 (294)
T ss_pred HHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHH
Confidence 99998899999999999997543322111111123333333344567899999999999999998765 568999999
Q ss_pred HHHHHhhcccCCCCEEEEEeCCcccccCCCccc--chHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCc------
Q 008663 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYR--EAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYT------ 432 (558)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~------ 432 (558)
|+++|+++++.+.+|+||++|+|+|+....... .....++.|+++|++|+|+++|+||+|.|+|++|+++.+
T Consensus 142 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~ 221 (294)
T cd00839 142 LEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCN 221 (294)
T ss_pred HHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccc
Confidence 999999987667799999999999987544322 245788999999999999999999999999999998754
Q ss_pred --cCCCCcEEEEeCCCcccCCcCCCCCCCCCCCCCCCCCCCeecCCCcccccccccCCCCCCCCCCCCCCccceeeCCcc
Q 008663 433 --LDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFG 510 (558)
Q Consensus 433 --~~~~g~vyiv~G~gG~~~~~~~~~~d~~~~~p~~~~~~~~~~~g~~~~~~n~t~~p~~~~~~~~~~p~~s~~~~~~~G 510 (558)
.+++|++||++|+||+.+...... ...++|++++...||
T Consensus 222 ~~~~~~g~~yiv~G~~G~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~g 262 (294)
T cd00839 222 PYSNPKGPVHIVIGAGGNDEGLDPFS---------------------------------------APPPAWSAFRESDYG 262 (294)
T ss_pred cccCCCccEEEEECCCccccCcCccc---------------------------------------CCCCCceEEEeccCC
Confidence 368899999999999976532100 012579999999999
Q ss_pred eEEEEEecCCeEEEEEEEecCCcceeeeEEEEEe
Q 008663 511 HGILEVKNETHALWTWHRNQDFYEAAGDQIYIVR 544 (558)
Q Consensus 511 ~~~l~v~n~t~~~~~~~~~~d~~~~~~D~~~i~~ 544 (558)
|++|++.|+|+|.|+|+++.++ +|+|+|+|+|
T Consensus 263 ~~~~~~~~~t~l~~~~~~~~~g--~v~D~f~i~k 294 (294)
T cd00839 263 FGRLTVHNSTHLHFEWIRNDDG--VVIDSFWIIK 294 (294)
T ss_pred EEEEEEEecCeEEEEEEECCCC--eEEEEEEEeC
Confidence 9999999999999999998877 9999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=1.2e-32 Score=284.97 Aligned_cols=256 Identities=16% Similarity=0.292 Sum_probs=185.9
Q ss_pred CeEEEEEecCCCCCChHHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHH-HH
Q 008663 208 PSRIAIVGDVGLTYNTTSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY-WG 281 (558)
Q Consensus 208 ~~rfavigD~g~~~~~~~~l~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~-~~ 281 (558)
.+||+++||+|.....+..+++.+ +.++||||.+||+. .++.. + ..+++|.. |.
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~--s-----------------v~Dp~f~~~FE 85 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVD--G-----------------LNDPKWKHCFE 85 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCC--C-----------------ccchhHHhhHh
Confidence 689999999997655554443322 35899999999998 43321 1 11356665 44
Q ss_pred Hhhhhhh--ccCCceeecCCCccccCccchh--hH------------hh------hhccCCCCCCCCCCCceEEEE----
Q 008663 282 RYMQPVL--SKVPIMVVEGNHEYEEQAENRT--FV------------AY------TSRFAFPSKESGSLSKFYYSF---- 335 (558)
Q Consensus 282 ~~l~~l~--~~~P~~~v~GNHD~~~~~~~~~--~~------------~y------~~~f~~P~~~~~~~~~~yYsf---- 335 (558)
+...... .++||++|+||||+..+..... +. .| ..||.||. .||.+
T Consensus 86 ~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f 157 (394)
T PTZ00422 86 NVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHF 157 (394)
T ss_pred hhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeee
Confidence 4444433 5799999999999975433211 10 11 24677764 57754
Q ss_pred Ee-------------CeEEEEEEcCccc-----C-CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchH
Q 008663 336 NA-------------GGIHFLMLAAYVS-----F-DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAE 396 (558)
Q Consensus 336 ~~-------------G~v~fI~LDt~~~-----~-~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~ 396 (558)
.. ..+.||+|||... + ....+|++||+++|+.+ ++.++|+||++|||+|+++.. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~h--g~~~ 234 (394)
T PTZ00422 158 TDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSS--KGDS 234 (394)
T ss_pred ecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCC--CCCH
Confidence 21 2389999999632 1 23578999999999754 356789999999999998753 3346
Q ss_pred HHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcccCCcCCCCCCCCCCCCCCCCCCCeecCC
Q 008663 397 CMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGG 476 (558)
Q Consensus 397 ~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~~~~~~~~~~d~~~~~p~~~~~~~~~~~g 476 (558)
+++..|+|||++|+||++|+||+|++||.. .+|+.||++|+||...+...
T Consensus 235 ~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~~~---------------------- 284 (394)
T PTZ00422 235 YLSYYLLPLLKDAQVDLYISGYDRNMEVLT--------DEGTAHINCGSGGNSGRKSI---------------------- 284 (394)
T ss_pred HHHHHHHHHHHHcCcCEEEEccccceEEec--------CCCceEEEeCccccccCCCC----------------------
Confidence 789999999999999999999999999983 56899999999998543210
Q ss_pred CcccccccccCCCCCCCCCCCCCCccceeeCCcceEEEEEecCCeEEEEEEEecCCcceeeeEEEEEeCCC
Q 008663 477 GKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPD 547 (558)
Q Consensus 477 ~~~~~~n~t~~p~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~~~d~~~~~~D~~~i~~~~~ 547 (558)
..++|+.|....+||..+++ +.+.+.++|+.+.+| ++++++.+.|.+-
T Consensus 285 --------------------~~~~~s~F~~~~~GF~~~~l-~~~~l~~~fid~~~G--kvL~~~~~~~~~~ 332 (394)
T PTZ00422 285 --------------------MKNSKSLFYSEDIGFCIHEL-NAEGMVTKFVSGNTG--EVLYTHKQPLKKR 332 (394)
T ss_pred --------------------CCCCCcceecCCCCEEEEEE-ecCEEEEEEEeCCCC--cEEEEeeecccch
Confidence 12456788888899999998 888999999954455 8999999977643
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.98 E-value=6.8e-31 Score=266.55 Aligned_cols=243 Identities=23% Similarity=0.388 Sum_probs=171.5
Q ss_pred eEEEEEecCCCC-CC-hHHH---HHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH-HHHH
Q 008663 209 SRIAIVGDVGLT-YN-TTST---VSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW-DYWG 281 (558)
Q Consensus 209 ~rfavigD~g~~-~~-~~~~---l~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w-d~~~ 281 (558)
++|+++||+|.. .. ...+ +.++. +.+|||||++||++|+++... .+..+| +.|.
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~-------------------~~~~~~~~~~~ 61 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGS-------------------VDDPRFETTFE 61 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCC-------------------CcchHHHHHHH
Confidence 489999999985 22 2222 23333 368999999999999753210 011233 3345
Q ss_pred HhhhhhhccCCceeecCCCccccCccch-hhHh--hhhccCCCCCCCCCCCceEEEEEeC------eEEEEEEcCcccC-
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYEEQAENR-TFVA--YTSRFAFPSKESGSLSKFYYSFNAG------GIHFLMLAAYVSF- 351 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~-~~~~--y~~~f~~P~~~~~~~~~~yYsf~~G------~v~fI~LDt~~~~- 351 (558)
+.++.+..++|+++++||||+....... .+.. +..++.+ ...||+|+++ +++||+|||....
T Consensus 62 ~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~--------~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~ 133 (277)
T cd07378 62 DVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTM--------PAYYYRVSFPFPSSDTTVEFIMIDTVPLCG 133 (277)
T ss_pred HHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccC--------cchheEEEeecCCCCCEEEEEEEeChhHcC
Confidence 5555554689999999999997432110 0111 1222333 3479999988 7999999997532
Q ss_pred --------------CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEEC
Q 008663 352 --------------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNG 417 (558)
Q Consensus 352 --------------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsG 417 (558)
..+.+|++||+++|+++. .+|+||++|+|+++..... .....++.|++++.+++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~G 208 (277)
T cd07378 134 NSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSG 208 (277)
T ss_pred ccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeC
Confidence 236899999999999864 3799999999999765322 224678999999999999999999
Q ss_pred cccCceeeeeccCCccCCCCcEEEEeCCCcccCCcCCCCCCCCCCCCCCCCCCCeecCCCcccccccccCCCCCCCCCCC
Q 008663 418 HVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDR 497 (558)
Q Consensus 418 H~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~~~~~~~~~~d~~~~~p~~~~~~~~~~~g~~~~~~n~t~~p~~~~~~~~~ 497 (558)
|.|.+++..+ +..|+.||++|+||......... ...
T Consensus 209 H~H~~~~~~~------~~~~~~~i~~G~~~~~~~~~~~~--------------------------------------~~~ 244 (277)
T cd07378 209 HDHNLQHIKD------DGSGTSFVVSGAGSKARPSVKHI--------------------------------------DKV 244 (277)
T ss_pred Ccccceeeec------CCCCcEEEEeCCCcccCCCCCcc--------------------------------------Ccc
Confidence 9999999854 34699999999988854422100 012
Q ss_pred CCCccceeeCCcceEEEEEecCCeEEEEEEE
Q 008663 498 QPDYSAFRESSFGHGILEVKNETHALWTWHR 528 (558)
Q Consensus 498 ~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~ 528 (558)
+|.|+.++...+||.+|+|. ...+.++|+.
T Consensus 245 ~~~~~~~~~~~~Gy~~i~v~-~~~l~~~~~~ 274 (277)
T cd07378 245 PQFFSGFTSSGGGFAYLELT-KEELTVRFYD 274 (277)
T ss_pred cccccccccCCCCEEEEEEe-cCEEEEEEEC
Confidence 34678888899999999994 5689999983
No 6
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.97 E-value=2.4e-28 Score=264.65 Aligned_cols=314 Identities=21% Similarity=0.281 Sum_probs=167.7
Q ss_pred cCCC-CceEEEEEcCcccccCCCCCCCCCCCccEEEEeccCCCCce--EEEeEEEEeeeecccCCccccccCcEEEEEeC
Q 008663 94 SSAH-DSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNR--KATGRSLVYSQLYPFLGLQNYTSGIIHHVRLT 170 (558)
Q Consensus 94 ~~~p-~s~~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~--~~~g~~~~y~~~~~~~g~~~~~~~~~h~v~l~ 170 (558)
+||| .+.+|.|+...+....... | ..+..|+|..+.+.... ...+...+ +...+++++|+|+
T Consensus 5 sGdp~~~svilWtR~~~~~~~~~~---~-~~~~~V~~~va~d~~~~~~~~~~~~~~-----------~~~~d~t~~v~v~ 69 (453)
T PF09423_consen 5 SGDPTPDSVILWTRVTPPAAAGGM---P-KAPVPVRWEVATDPEFSNVVRSGTVTT-----------TAERDFTVKVDVT 69 (453)
T ss_dssp EE---SS-EEEEEE--SBGGTB-------SS-EEEEEEEESSTTSSSEEEEEEEEE------------GGGTTEEEEEE-
T ss_pred ccCCCCCEEEEEEEecCcccCCCC---C-CCcEEEEEEEECCCCccceEEecceec-----------ccCCCeEeecccC
Confidence 5678 6788899997752111111 1 23456777776555433 22232211 1245799999999
Q ss_pred CCCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEecCCCCCChHHHHHHHHh-CCCCEEEEcCCcccccc
Q 008663 171 GLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMIS-NRPDLILLVGDVTYANL 249 (558)
Q Consensus 171 gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~~~~~~~~rfavigD~g~~~~~~~~l~~l~~-~~pDfvl~~GDl~Y~d~ 249 (558)
||+|+|+|+|||..+.....|.+++|||+|..... ++||++++|.+.......+++++.+ .+|||+||+||++|++.
T Consensus 70 gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~--~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~ 147 (453)
T PF09423_consen 70 GLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPD--PFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDG 147 (453)
T ss_dssp S--TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----
T ss_pred CCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCC--ceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccC
Confidence 99999999999998654578899999999765443 6999999999876666788899988 69999999999999974
Q ss_pred c--ccCCCCCccccccCC--CCCCccchhHHHHHHH--HhhhhhhccCCceeecCCCccccCcc----------------
Q 008663 250 Y--LTNGTGSDCYACSFA--NSPIHETYQPRWDYWG--RYMQPVLSKVPIMVVEGNHEYEEQAE---------------- 307 (558)
Q Consensus 250 ~--~~~G~~~~~~~~~~~--~~~~~e~Y~~~wd~~~--~~l~~l~~~~P~~~v~GNHD~~~~~~---------------- 307 (558)
. ..........+...| .....+.|+.+|..+. ..++.+.+++|+++++.+||+.++..
T Consensus 148 ~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~ 227 (453)
T PF09423_consen 148 GGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQD 227 (453)
T ss_dssp TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHH
Confidence 1 000000000000111 1223456777776654 34677888999999999999975532
Q ss_pred --chhhHhhhhccCCCCCC-CCCCCceEEEEEeCe-EEEEEEcCcccCC---------------------CcHHHHHHHH
Q 008663 308 --NRTFVAYTSRFAFPSKE-SGSLSKFYYSFNAGG-IHFLMLAAYVSFD---------------------KSGDQYKWLE 362 (558)
Q Consensus 308 --~~~~~~y~~~f~~P~~~-~~~~~~~yYsf~~G~-v~fI~LDt~~~~~---------------------~~~~Q~~WL~ 362 (558)
...+++|.+..+..... .+.....|++|++|+ +.|++||++.... .+.+|++||+
T Consensus 228 ~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~ 307 (453)
T PF09423_consen 228 RRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLE 307 (453)
T ss_dssp HHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHH
T ss_pred HHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHH
Confidence 01234455544433211 123456799999999 9999999974332 2789999999
Q ss_pred HHHhhcccCCCCEEEEEeCCcccccC-----------CCcccchHHHHHHHHHHHHHcCCc--EEEECcccCceeeee
Q 008663 363 EDLANVEREVTPWLVATWHAPWYSTY-----------KAHYREAECMRVAMEDLLYKYGVD--VVFNGHVHAYERSNR 427 (558)
Q Consensus 363 ~~L~~~~~~~~~wvIv~~H~P~y~s~-----------~~~~~~~~~~r~~l~~ll~~~~Vd--lvlsGH~H~yeR~~~ 427 (558)
+.|++. .++|+|+..-.|+.... ...|......|++|.++|.+.++. ++|+|++|.......
T Consensus 308 ~~L~~s---~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~~ 382 (453)
T PF09423_consen 308 DWLASS---QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAASRI 382 (453)
T ss_dssp HHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEEE
T ss_pred HHHhcC---CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheeeec
Confidence 999984 47899999988875432 234555667899999999998875 789999998877653
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=5.5e-27 Score=236.15 Aligned_cols=205 Identities=22% Similarity=0.364 Sum_probs=148.0
Q ss_pred CCeEEEEEecCCCCCC--h---------------HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCC
Q 008663 207 YPSRIAIVGDVGLTYN--T---------------TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANS 267 (558)
Q Consensus 207 ~~~rfavigD~g~~~~--~---------------~~~l~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~ 267 (558)
.+++|++++|.|.... . ...++.+.+. +||||+++||+++.. ..
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~------~~----------- 65 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAM------PG----------- 65 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCC------cc-----------
Confidence 3799999999998731 1 2234455555 899999999999632 10
Q ss_pred CCccchhHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcC
Q 008663 268 PIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAA 347 (558)
Q Consensus 268 ~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt 347 (558)
.+..+.+|+.+.+.++.+...+|+++++||||+........+..|...| +..||+|++|+++||+|||
T Consensus 66 --~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds 133 (262)
T cd07395 66 --DELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVF----------GDDYFSFWVGGVFFIVLNS 133 (262)
T ss_pred --hhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHHHHHh----------CCcceEEEECCEEEEEecc
Confidence 1111245677777777766789999999999986433323344454444 2358999999999999999
Q ss_pred cccC------CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcc----cchHHHHHHHHHHHHHcCCcEEEEC
Q 008663 348 YVSF------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY----REAECMRVAMEDLLYKYGVDVVFNG 417 (558)
Q Consensus 348 ~~~~------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~----~~~~~~r~~l~~ll~~~~VdlvlsG 417 (558)
.... ....+|++||+++|+++++.+.+|+||++|+|++....... ......++++.++|++++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~G 213 (262)
T cd07395 134 QLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSG 213 (262)
T ss_pred ccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEEC
Confidence 6432 23579999999999997645567899999999986432211 1234578899999999999999999
Q ss_pred cccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 418 HVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 418 H~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
|+|.+++.. -.|+.++++++.|.
T Consensus 214 H~H~~~~~~--------~~g~~~~~~~~~~~ 236 (262)
T cd07395 214 HYHRNAGGR--------YGGLEMVVTSAIGA 236 (262)
T ss_pred ccccCCceE--------ECCEEEEEcCceec
Confidence 999988753 24777887777664
No 8
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-27 Score=244.09 Aligned_cols=310 Identities=19% Similarity=0.243 Sum_probs=216.2
Q ss_pred cCCC-CceEEEEEcCcccccCCCCCCCCC-CCccEEEEeccCCCCceEEEeEEEEeeeecccCCccccccCcEEEEEeCC
Q 008663 94 SSAH-DSVWISWITGEFQIGNNLKPLDPK-SVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTG 171 (558)
Q Consensus 94 ~~~p-~s~~V~W~T~~~~~g~~~~~~~p~-~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~~~~g~~~~~~~~~h~v~l~g 171 (558)
++|| ....|.|+..+|. |++-. .++..+++++.++-...+..|+..+ ....++.+||.++|
T Consensus 45 SGDp~~~svviWTRl~P~------p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a-----------~p~~dhtv~v~~~g 107 (522)
T COG3540 45 SGDPTATSVVIWTRLDPE------PLNGGRPVPVIWEVSTDENFSNIVRKGTVIA-----------SPELDHTVHVDLRG 107 (522)
T ss_pred cCCCCCCeEEEEEccCCc------cccCCCCcceEEEecCCccHHHHHhcCCccC-----------CcccCceEEEeccC
Confidence 4788 6789999997763 22211 2344556665554333333333211 12456899999999
Q ss_pred CCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccc
Q 008663 172 LKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYL 251 (558)
Q Consensus 172 L~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~~~~~~~~rfavigD~g~~~~~~~~l~~l~~~~pDfvl~~GDl~Y~d~~~ 251 (558)
|+|++.|+||+...+ ..|.+++|||+|+.+....-++|++.+|.|...+...+++++.+.+|||+||+||.+|+++..
T Consensus 108 L~P~~~yfYRf~~~~--~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 108 LSPDQDYFYRFKAGD--ERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred CCCCceEEEEEeeCC--ccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCc
Confidence 999999999999886 778999999999987654455666666767776777889999999999999999999997542
Q ss_pred cCCCCCccccc-cCCCC-----CCccchhHHHHHHH--HhhhhhhccCCceeecCCCccccCcc----------------
Q 008663 252 TNGTGSDCYAC-SFANS-----PIHETYQPRWDYWG--RYMQPVLSKVPIMVVEGNHEYEEQAE---------------- 307 (558)
Q Consensus 252 ~~G~~~~~~~~-~~~~~-----~~~e~Y~~~wd~~~--~~l~~l~~~~P~~~v~GNHD~~~~~~---------------- 307 (558)
........... ..++. ..-+.|+.+|..++ ..++...+..||++.|.+||..++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~ 265 (522)
T COG3540 186 PDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFV 265 (522)
T ss_pred ccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHH
Confidence 11000000000 01111 12357888888775 45777789999999999999985521
Q ss_pred ---chhhHhhhhccCCCCCCCCCCCceEEEEEeCe-EEEEEEcCcccC------C----------------CcHHHHHHH
Q 008663 308 ---NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGG-IHFLMLAAYVSF------D----------------KSGDQYKWL 361 (558)
Q Consensus 308 ---~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~-v~fI~LDt~~~~------~----------------~~~~Q~~WL 361 (558)
...+++|.+++++...........|.+|.+|+ +.|.+||++.+. + .+.+|.+||
T Consensus 266 ~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWL 345 (522)
T COG3540 266 LRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWL 345 (522)
T ss_pred HHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHH
Confidence 12346777766554433233468999999998 789999997654 1 278999999
Q ss_pred HHHHhhcccCCCCEEEEEeCCccccc----C---------CCcccchHHHHHHHHHHHHHcCCc--EEEECcccCceee
Q 008663 362 EEDLANVEREVTPWLVATWHAPWYST----Y---------KAHYREAECMRVAMEDLLYKYGVD--VVFNGHVHAYERS 425 (558)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s----~---------~~~~~~~~~~r~~l~~ll~~~~Vd--lvlsGH~H~yeR~ 425 (558)
++.|.+ +++.|.|+....|+--- . ...+..+..-|+.|+..+.+.++. ++|+|++|...-.
T Consensus 346 k~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA~ 421 (522)
T COG3540 346 KRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWAH 421 (522)
T ss_pred Hhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHHh
Confidence 999998 67889999999886311 1 112334455689999999999765 8899999965443
No 9
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.7e-24 Score=203.24 Aligned_cols=202 Identities=21% Similarity=0.320 Sum_probs=135.2
Q ss_pred CeEEEEEecCCCCCC--hHHH---HHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHH-HH
Q 008663 208 PSRIAIVGDVGLTYN--TTST---VSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWD-YW 280 (558)
Q Consensus 208 ~~rfavigD~g~~~~--~~~~---l~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd-~~ 280 (558)
.++|+++||+|.... .... +..|. +.+.||||-+||++|.++..+. +.++.+ .|
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~-------------------~Dp~Fq~sF 103 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE-------------------NDPRFQDSF 103 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC-------------------CChhHHhhh
Confidence 799999999995432 2222 22333 3589999999999998654221 112222 22
Q ss_pred HHhhhhhhccCCceeecCCCccccCccch---hhHhhhhccCCCCCCCCCCCceEEE------EEeCeEEEEEEcCcccC
Q 008663 281 GRYMQPVLSKVPIMVVEGNHEYEEQAENR---TFVAYTSRFAFPSKESGSLSKFYYS------FNAGGIHFLMLAAYVSF 351 (558)
Q Consensus 281 ~~~l~~l~~~~P~~~v~GNHD~~~~~~~~---~~~~y~~~f~~P~~~~~~~~~~yYs------f~~G~v~fI~LDt~~~~ 351 (558)
.+....-..+.||+.+.||||+.++...+ .++....||..|. .||. +..-++.++|+|+....
T Consensus 104 ~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~ 175 (336)
T KOG2679|consen 104 ENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLC 175 (336)
T ss_pred hhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecc
Confidence 23322222356999999999998764432 2455556665553 1221 11123455555553211
Q ss_pred C--------------CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEEC
Q 008663 352 D--------------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNG 417 (558)
Q Consensus 352 ~--------------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsG 417 (558)
. .-..|+.||+..|++ +.++|+||++|||+.+.+ +.+...|+++.|.|||+.++||++++|
T Consensus 176 ~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~nG 250 (336)
T KOG2679|consen 176 TDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYING 250 (336)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEec
Confidence 1 136788999999998 467899999999998864 346778999999999999999999999
Q ss_pred cccCceeeeeccCCccC-CCCcEEEEeCCCcc
Q 008663 418 HVHAYERSNRVYNYTLD-PCGPVHITVGDGGN 448 (558)
Q Consensus 418 H~H~yeR~~~v~~~~~~-~~g~vyiv~G~gG~ 448 (558)
|+|+.|... + ..++-|+++|+|..
T Consensus 251 HDHcLQhis-------~~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 251 HDHCLQHIS-------SPESGIQFVTSGAGSK 275 (336)
T ss_pred chhhhhhcc-------CCCCCeeEEeeCCccc
Confidence 999999985 3 34566777777654
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.91 E-value=5.2e-23 Score=204.15 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=135.9
Q ss_pred EEEEEecCCCCCCh-------------HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008663 210 RIAIVGDVGLTYNT-------------TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (558)
Q Consensus 210 rfavigD~g~~~~~-------------~~~l~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (558)
||++++|+|.+... .++++.+.+. +||+||++||+++. +. .
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~------~~------------------~ 56 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD------GS------------------P 56 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC------CC------------------H
Confidence 69999999987531 2345555555 89999999999963 22 1
Q ss_pred HHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccC---
Q 008663 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--- 351 (558)
Q Consensus 275 ~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~--- 351 (558)
..|+.+.+.++.+ ++|++.++||||... . +...|..... .....+|+|+.++++||+||+....
T Consensus 57 ~~~~~~~~~l~~~--~~p~~~v~GNHD~~~-----~---~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~ 123 (240)
T cd07402 57 ESYERLRELLAAL--PIPVYLLPGNHDDRA-----A---MRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHG 123 (240)
T ss_pred HHHHHHHHHHhhc--CCCEEEeCCCCCCHH-----H---HHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcC
Confidence 3455666667666 899999999999841 1 2222211100 2345688999999999999986432
Q ss_pred -CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccc-hHHHHHHHHHHHHHc-CCcEEEECcccCceeeeec
Q 008663 352 -DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-AECMRVAMEDLLYKY-GVDVVFNGHVHAYERSNRV 428 (558)
Q Consensus 352 -~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR~~~v 428 (558)
....+|++||++.|++.. ..++|+++|+|++......... ....++++.+++.++ +|+++|+||.|......
T Consensus 124 ~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~-- 198 (240)
T cd07402 124 GELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS-- 198 (240)
T ss_pred CEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE--
Confidence 236889999999999864 2357889999987653211111 112367899999999 99999999999976653
Q ss_pred cCCccCCCCcEEEEeCCCccc
Q 008663 429 YNYTLDPCGPVHITVGDGGNR 449 (558)
Q Consensus 429 ~~~~~~~~g~vyiv~G~gG~~ 449 (558)
-+|+.++++|+.|..
T Consensus 199 ------~~g~~~~~~gs~~~~ 213 (240)
T cd07402 199 ------WGGIPLLTAPSTCHQ 213 (240)
T ss_pred ------ECCEEEEEcCcceee
Confidence 368889998887763
No 11
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=4.9e-23 Score=208.01 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=136.7
Q ss_pred eEEEEEecCCCCCCh--------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008663 209 SRIAIVGDVGLTYNT--------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (558)
Q Consensus 209 ~rfavigD~g~~~~~--------------~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (558)
|||++++|+|..... .++++.+++.+||+||++||+++. +.. + .+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~------~~~--------------~-~~ 59 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDG------DNA--------------R-AE 59 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecC------CCc--------------h-HH
Confidence 699999999965421 234566666789999999999953 210 0 12
Q ss_pred HHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCccc----
Q 008663 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS---- 350 (558)
Q Consensus 275 ~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~---- 350 (558)
..|+.+.+.++.+ ++|+++++||||...... .+.. .... ...+..||+|+.++++||+||+...
T Consensus 60 ~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~~-----~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~~ 127 (267)
T cd07396 60 EALDAVLAILDRL--KGPVHHVLGNHDLYNPSR-----EYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISALG 127 (267)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCccccccccH-----hhhh-cccc----cCCCCceEEEecCCcEEEEEeCCcccccc
Confidence 4566666666665 689999999999963321 1111 0001 1234579999999999999999531
Q ss_pred ------------------------------CCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHH
Q 008663 351 ------------------------------FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRV 400 (558)
Q Consensus 351 ------------------------------~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~ 400 (558)
...+.+|++||+++|+++..+. .++||++|+|++...... ......++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~-~~viV~~Hhp~~~~~~~~-~~~~~~~~ 205 (267)
T cd07396 128 RPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANG-EKVIIFSHFPLHPESTSP-HGLLWNHE 205 (267)
T ss_pred CCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCCCc-cccccCHH
Confidence 1235899999999999875432 458999999987654211 11112357
Q ss_pred HHHHHHHHc-CCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 401 AMEDLLYKY-GVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 401 ~l~~ll~~~-~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
.+.+++.++ +|+++|+||+|.++... .+|+.|+++|+-..
T Consensus 206 ~~~~ll~~~~~V~~v~~GH~H~~~~~~--------~~gi~~~~~~a~~~ 246 (267)
T cd07396 206 EVLSILRAYGCVKACISGHDHEGGYAQ--------RHGIHFLTLEGMVE 246 (267)
T ss_pred HHHHHHHhCCCEEEEEcCCcCCCCccc--------cCCeeEEEechhhc
Confidence 888999996 89999999999997652 46888988877554
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.87 E-value=9.3e-21 Score=192.25 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=121.7
Q ss_pred CeEEEEEecCCCCCC---------h----HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccc
Q 008663 208 PSRIAIVGDVGLTYN---------T----TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHET 272 (558)
Q Consensus 208 ~~rfavigD~g~~~~---------~----~~~l~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~ 272 (558)
++||++++|+|.... . .++++++.+. +|||||++||++.. +.
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~------~~----------------- 70 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQD------HS----------------- 70 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCC------CC-----------------
Confidence 799999999997421 1 2345555443 68999999999952 22
Q ss_pred hhHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccC-
Q 008663 273 YQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF- 351 (558)
Q Consensus 273 Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~- 351 (558)
...+..+.+.++.+ .+|+++++||||... .+..+.....+ ...++.+..++++||+||+....
T Consensus 71 -~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~ 134 (275)
T PRK11148 71 -SEAYQHFAEGIAPL--RKPCVWLPGNHDFQP-----AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGV 134 (275)
T ss_pred -HHHHHHHHHHHhhc--CCcEEEeCCCCCChH-----HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCC
Confidence 12345556666666 689999999999842 12222211111 11233344557999999996432
Q ss_pred ---CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCccc-chHHHHHHHHHHHHHc-CCcEEEECcccCceeee
Q 008663 352 ---DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYR-EAECMRVAMEDLLYKY-GVDVVFNGHVHAYERSN 426 (558)
Q Consensus 352 ---~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~-~~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR~~ 426 (558)
..+.+|++||+++|++...+ +-+|++.|+|+... ..... ......+++.+++++| +|+++|+||+|.....
T Consensus 135 ~~G~l~~~ql~wL~~~L~~~~~~--~~vv~~hH~P~~~~-~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~- 210 (275)
T PRK11148 135 PHGELSEYQLEWLERKLADAPER--HTLVLLHHHPLPAG-CAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDL- 210 (275)
T ss_pred cCCEeCHHHHHHHHHHHhhCCCC--CeEEEEcCCCCCCC-cchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhc-
Confidence 23689999999999986432 22444444555432 11110 0112346899999998 8999999999986543
Q ss_pred eccCCccCCCCcEEEEeCCCcc
Q 008663 427 RVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 427 ~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
.-+|+.++++++.+.
T Consensus 211 -------~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 211 -------DWNGRRLLATPSTCV 225 (275)
T ss_pred -------eECCEEEEEcCCCcC
Confidence 236787777666554
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.85 E-value=2.6e-20 Score=186.80 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=125.6
Q ss_pred EEEEecCCCCCChH--------HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008663 211 IAIVGDVGLTYNTT--------STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (558)
Q Consensus 211 favigD~g~~~~~~--------~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (558)
|++++|+|.+.... .+++.+.+.+||+||++||++.... ..+. ....++.+|+.|.+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~--~~~~-------------~~~~~~~~~~~~~~ 66 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKT--GNKL-------------PSYQYQEEWQKYYN 66 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccc--cCCC-------------cccccHHHHHHHHH
Confidence 78999999864321 1234555679999999999995321 0110 01223567888877
Q ss_pred hhhhhh--ccCCceeecCCCccccCccchhhHhhhhccC-CCCCCCCCCCceEEEEEeCeEEEEEEcCccc---------
Q 008663 283 YMQPVL--SKVPIMVVEGNHEYEEQAENRTFVAYTSRFA-FPSKESGSLSKFYYSFNAGGIHFLMLAAYVS--------- 350 (558)
Q Consensus 283 ~l~~l~--~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~-~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~--------- 350 (558)
.+.... ...|++.++||||............|..+|. ... ......+++++.|+++||+|||...
T Consensus 67 ~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~ 143 (256)
T cd07401 67 ILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGR---DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNF 143 (256)
T ss_pred HHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheecC---CCccceEEEecCCCEEEEEEcCccCCCCCCCCce
Confidence 765543 3689999999999964322222222222221 110 0111122334458999999999642
Q ss_pred -CCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeec
Q 008663 351 -FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRV 428 (558)
Q Consensus 351 -~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v 428 (558)
.....+|++||+++|++..+ .+++||++|+|++...... . ...+ .+.++|++++|+++|+||.|.+++..|+
T Consensus 144 ~g~l~~~ql~wL~~~L~~~~~--~~~~IV~~HhP~~~~~~~~-~--~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 144 FGSLDKKLLDRLEKELEKSTN--SNYTIWFGHYPTSTIISPS-A--KSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred eccCCHHHHHHHHHHHHhccc--CCeEEEEEcccchhccCCC-c--chhH-HHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 22468999999999998643 3579999999986532211 1 1122 3899999999999999999999996664
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.78 E-value=1.6e-18 Score=169.40 Aligned_cols=150 Identities=20% Similarity=0.257 Sum_probs=107.7
Q ss_pred eEEEEEecCCCCCCh-----HHH----HHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHH
Q 008663 209 SRIAIVGDVGLTYNT-----TST----VSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY 279 (558)
Q Consensus 209 ~rfavigD~g~~~~~-----~~~----l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~ 279 (558)
|||++++|+|..... .+. ++.+.+.+||+|+++||+++. +. ...+|+.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~------~~-----------------~~~~~~~ 57 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDD------GD-----------------NDAEWEA 57 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCC------CC-----------------CHHHHHH
Confidence 689999999975331 122 333445689999999999963 11 0246788
Q ss_pred HHHhhhhhh-ccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHH
Q 008663 280 WGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQY 358 (558)
Q Consensus 280 ~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~ 358 (558)
+.+.++.+. ..+|+++++||||. ++.+|+. ...+|+
T Consensus 58 ~~~~~~~l~~~~~p~~~~~GNHD~---------------------------------------~~~ld~~----~~~~ql 94 (214)
T cd07399 58 ADKAFARLDKAGIPYSVLAGNHDL---------------------------------------VLALEFG----PRDEVL 94 (214)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcc---------------------------------------hhhCCCC----CCHHHH
Confidence 888888876 67999999999992 2233332 358999
Q ss_pred HHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccc-----hHHHHHHHHHHHHHc-CCcEEEECcccCceeeee
Q 008663 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-----AECMRVAMEDLLYKY-GVDVVFNGHVHAYERSNR 427 (558)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~-----~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR~~~ 427 (558)
+||++.|++.+ .+++|+++|+|++......... ....++.|+++++++ +|++||+||+|.+.+...
T Consensus 95 ~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 95 QWANEVLKKHP---DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred HHHHHHHHHCC---CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 99999999854 2358999999998654321111 123456788999999 799999999999988753
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.76 E-value=1.2e-17 Score=171.35 Aligned_cols=193 Identities=20% Similarity=0.286 Sum_probs=126.2
Q ss_pred EecCCCCCC---hHHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH-HHHHHHHhhhhh
Q 008663 214 VGDVGLTYN---TTSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP-RWDYWGRYMQPV 287 (558)
Q Consensus 214 igD~g~~~~---~~~~l~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~-~wd~~~~~l~~l 287 (558)
+|+.++... ...+++.+.+. +|||||++||++..+.+.. ..+.... .+..+.+.++..
T Consensus 43 ~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~----------------~~~~~~~~~~~~~~~~l~~~ 106 (296)
T cd00842 43 WGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQ----------------TPETLVLISISNLTSLLKKA 106 (296)
T ss_pred CcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhh----------------chhHHHHHHHHHHHHHHHHh
Confidence 566664432 23456667666 8999999999997542200 0000000 245556667777
Q ss_pred hccCCceeecCCCccccCcc-------chhhHhhhhccC--CCCCC-CCCCCceEEEEE-eCeEEEEEEcCcccC-----
Q 008663 288 LSKVPIMVVEGNHEYEEQAE-------NRTFVAYTSRFA--FPSKE-SGSLSKFYYSFN-AGGIHFLMLAAYVSF----- 351 (558)
Q Consensus 288 ~~~~P~~~v~GNHD~~~~~~-------~~~~~~y~~~f~--~P~~~-~~~~~~~yYsf~-~G~v~fI~LDt~~~~----- 351 (558)
...+|+++++||||...... ...+..+...|. ++... .......||++. .++++||+|||...+
T Consensus 107 ~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~ 186 (296)
T cd00842 107 FPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFW 186 (296)
T ss_pred CCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChh
Confidence 78899999999999975321 112222222221 22211 112345789998 889999999996432
Q ss_pred ------CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcC--CcEEEECcccCce
Q 008663 352 ------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVHAYE 423 (558)
Q Consensus 352 ------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H~ye 423 (558)
....+|++||+++|+++++++ ..++|++|+|+....... ....+++|.+++++|+ |.++|+||+|..+
T Consensus 187 ~~~~~~~~~~~Ql~WL~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 187 LLGSNETDPAGQLQWLEDELQEAEQAG-EKVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHRDE 262 (296)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHCC-CeEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeecccccce
Confidence 234789999999999986543 347888999987653221 1345788999999997 7789999999887
Q ss_pred eee
Q 008663 424 RSN 426 (558)
Q Consensus 424 R~~ 426 (558)
...
T Consensus 263 ~~~ 265 (296)
T cd00842 263 FRV 265 (296)
T ss_pred EEE
Confidence 653
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.70 E-value=4.8e-17 Score=149.41 Aligned_cols=191 Identities=23% Similarity=0.292 Sum_probs=100.7
Q ss_pred eEEEEEecCCCCCChH----H-HHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH-H
Q 008663 209 SRIAIVGDVGLTYNTT----S-TVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG-R 282 (558)
Q Consensus 209 ~rfavigD~g~~~~~~----~-~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~-~ 282 (558)
+||+++||+|...... . ......+.++|+||++||+++.. .. ...+.... .
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~------~~-----------------~~~~~~~~~~ 57 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGG------NP-----------------SEEWRAQFWF 57 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSS------SH-----------------HHHHHHHHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccc------cc-----------------cccchhhhcc
Confidence 6999999999875433 2 23334467999999999999742 10 11111111 1
Q ss_pred hhhhhhccCCceeecCCCccccCccchhhHhhhhccCC-CCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHH
Q 008663 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAF-PSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361 (558)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~-P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL 361 (558)
.........|+++++||||+...........+...... .....................+..............+..|+
T Consensus 58 ~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (200)
T PF00149_consen 58 FIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWW 137 (200)
T ss_dssp HHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHH
T ss_pred chhhhhccccccccccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcc
Confidence 23344568999999999999743221111111111100 00000000000011111222222222221112223333333
Q ss_pred HHHHhhcccCCCCEEEEEeCCcccccCCCccc--chHHHHHHHHHHHHHcCCcEEEECcccCc
Q 008663 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYR--EAECMRVAMEDLLYKYGVDVVFNGHVHAY 422 (558)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~~~~VdlvlsGH~H~y 422 (558)
...+....+...+++|+++|+|++........ .....++.+..++.+++|+++|+||+|.|
T Consensus 138 ~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 138 LWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 33322222344668999999999987543211 01235788999999999999999999986
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.67 E-value=9e-16 Score=153.61 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=109.3
Q ss_pred HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCceeecCCCccc
Q 008663 225 STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 225 ~~l~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
+.+..+.+ .+||+||++||++.. |... ..+.|...++.|.+.+..+....|++.++||||+.
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~------G~~~-----------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDG------GRDW-----------ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccC------CeeC-----------cHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 34444443 589999999999853 3210 01112222334444444433358999999999986
Q ss_pred cCcc--chhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCccc-----CCCcHHHHHHHHHHHhhcccCCCCEE
Q 008663 304 EQAE--NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS-----FDKSGDQYKWLEEDLANVEREVTPWL 376 (558)
Q Consensus 304 ~~~~--~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~-----~~~~~~Q~~WL~~~L~~~~~~~~~wv 376 (558)
.... ......|.+.|. ...|+|++|+++||+||+... .....+|.+||++.|+..... ..+
T Consensus 98 ~~~~~~~~~~~rf~~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~p~ 165 (257)
T cd08163 98 FGNGVVLPVRQRFEKYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKS--KPR 165 (257)
T ss_pred CCCCCCHHHHHHHHHHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCC--CcE
Confidence 4322 123455666663 235789999999999999632 123567999999999875432 238
Q ss_pred EEEeCCcccccCCCccc---c------------hH-HH-HHHHHHHHHHcCCcEEEECcccCceee
Q 008663 377 VATWHAPWYSTYKAHYR---E------------AE-CM-RVAMEDLLYKYGVDVVFNGHVHAYERS 425 (558)
Q Consensus 377 Iv~~H~P~y~s~~~~~~---~------------~~-~~-r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (558)
|+++|+|+|.......+ + .+ .+ .+.-..||.+.+..+||+||+|.|=..
T Consensus 166 ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 166 ILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred EEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCcccee
Confidence 99999999864321100 0 00 11 234446778889999999999988554
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.63 E-value=7.6e-15 Score=145.24 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=116.0
Q ss_pred EEEEecCCCCC--------C---hHHHHHHHHhC------CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccch
Q 008663 211 IAIVGDVGLTY--------N---TTSTVSHMISN------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (558)
Q Consensus 211 favigD~g~~~--------~---~~~~l~~l~~~------~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y 273 (558)
+.+++|+|... - ..+.++++.+. +||+||++||+++. +. +
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~------~~-----------------~ 57 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA------MK-----------------L 57 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC------CC-----------------h
Confidence 35788998762 1 13445555443 89999999999842 11 0
Q ss_pred hHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCccc-C-
Q 008663 274 QPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS-F- 351 (558)
Q Consensus 274 ~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~-~- 351 (558)
.......+.++.+ ..|+++|+||||+... . ...+.+.+. .. +.......++.++++.|+.++.... +
T Consensus 58 -~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~-~---~~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~ 126 (232)
T cd07393 58 -EEAKLDLAWIDAL--PGTKVLLKGNHDYWWG-S---ASKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGN 126 (232)
T ss_pred -HHHHHHHHHHHhC--CCCeEEEeCCccccCC-C---HHHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCC
Confidence 1122223344443 3578999999998421 1 122222121 00 0000012345668899998763211 0
Q ss_pred ---------------CCcHHHHHHHHHHHhhcccCC-CCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEE
Q 008663 352 ---------------DKSGDQYKWLEEDLANVEREV-TPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVF 415 (558)
Q Consensus 352 ---------------~~~~~Q~~WL~~~L~~~~~~~-~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~Vdlvl 415 (558)
....+|++||++.|+++.... ..++|+++|+|++..... .+.+.+++++++++++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl 198 (232)
T cd07393 127 PWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICV 198 (232)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEE
Confidence 013569999999999865332 246899999998764321 23567888999999999
Q ss_pred ECcccCceeeeeccCCccCCCCcEEEEeCCC
Q 008663 416 NGHVHAYERSNRVYNYTLDPCGPVHITVGDG 446 (558)
Q Consensus 416 sGH~H~yeR~~~v~~~~~~~~g~vyiv~G~g 446 (558)
+||+|..++..|+.. .-+|+.|+++.++
T Consensus 199 ~GH~H~~~~~~~~~~---~~~gi~~~~~~~~ 226 (232)
T cd07393 199 YGHLHGVGRDRAING---ERGGIRYQLVSAD 226 (232)
T ss_pred ECCCCCCcccccccc---eECCEEEEEEcch
Confidence 999999988765422 2357777766544
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.63 E-value=3.5e-15 Score=144.07 Aligned_cols=150 Identities=20% Similarity=0.260 Sum_probs=95.8
Q ss_pred CeEEEEEecCCCCCCh------------HHHHHH-HHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008663 208 PSRIAIVGDVGLTYNT------------TSTVSH-MISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (558)
Q Consensus 208 ~~rfavigD~g~~~~~------------~~~l~~-l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (558)
.+||++++|+|..... .+.+.+ +.+.+||+||++||+++.... .+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~-------------------~~--- 59 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENT-------------------ND--- 59 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCC-------------------ch---
Confidence 5899999999986432 122333 234689999999999974210 00
Q ss_pred HHHHHHHHhhhhhh-ccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCC
Q 008663 275 PRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDK 353 (558)
Q Consensus 275 ~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~ 353 (558)
..+..+.++++.+. .++|+++++||||. ....
T Consensus 60 ~~~~~~~~~~~~l~~~~~p~~~~~GNHD~-----------------------------------------------~g~l 92 (199)
T cd07383 60 NSTSALDKAVSPMIDRKIPWAATFGNHDG-----------------------------------------------YDWI 92 (199)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECccCCC-----------------------------------------------CCCC
Confidence 01233344444443 37999999999991 1113
Q ss_pred cHHHHHHHHHHHhhcc--cCCCCEEEEEeCCcccccCCCc---------ccc---hHHHHHHHHH-HHHHcCCcEEEECc
Q 008663 354 SGDQYKWLEEDLANVE--REVTPWLVATWHAPWYSTYKAH---------YRE---AECMRVAMED-LLYKYGVDVVFNGH 418 (558)
Q Consensus 354 ~~~Q~~WL~~~L~~~~--~~~~~wvIv~~H~P~y~s~~~~---------~~~---~~~~r~~l~~-ll~~~~VdlvlsGH 418 (558)
...|++||+++|++.. +....+.++++|+|+....... ..+ .......+.. +++..+|+++|+||
T Consensus 93 ~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH 172 (199)
T cd07383 93 RPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGH 172 (199)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999863 2234578999999986532110 011 0112233444 44566899999999
Q ss_pred ccCceeee
Q 008663 419 VHAYERSN 426 (558)
Q Consensus 419 ~H~yeR~~ 426 (558)
+|.++...
T Consensus 173 ~H~~~~~~ 180 (199)
T cd07383 173 DHGNDFCG 180 (199)
T ss_pred CCCcceec
Confidence 99987654
No 20
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.61 E-value=1.1e-14 Score=153.77 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=72.0
Q ss_pred CceEEEEE-eCeEEEEEEcCccc-----CCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcc-----cchHH
Q 008663 329 SKFYYSFN-AGGIHFLMLAAYVS-----FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY-----REAEC 397 (558)
Q Consensus 329 ~~~yYsf~-~G~v~fI~LDt~~~-----~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~-----~~~~~ 397 (558)
+..||+|+ .++++||+|||... ....++|++||+++|++. ..+++||++|||++....... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 89999999999743 124699999999999974 335699999999886532111 01112
Q ss_pred HHHHHHHHHHHc-CCcEEEECcccCceee
Q 008663 398 MRVAMEDLLYKY-GVDVVFNGHVHAYERS 425 (558)
Q Consensus 398 ~r~~l~~ll~~~-~VdlvlsGH~H~yeR~ 425 (558)
..++|.++|++| +|.++|+||.|.....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 357899999998 7999999999987654
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.60 E-value=2.3e-14 Score=136.22 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=102.1
Q ss_pred EEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhcc
Q 008663 211 IAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSK 290 (558)
Q Consensus 211 favigD~g~~~~~~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~ 290 (558)
|+++||+|........ ..+.+.++|+||++||+++. +. .+.| ..+ +.++.+ +
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~------~~--------------~~~~----~~~-~~l~~~--~ 52 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNF------GG--------------KEAA----VEI-NLLLAI--G 52 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCc------CC--------------HHHH----HHH-HHHHhc--C
Confidence 5789999986533222 34456689999999999852 22 0111 111 334433 7
Q ss_pred CCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCccc------CCCcHHHHHHHHHH
Q 008663 291 VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS------FDKSGDQYKWLEED 364 (558)
Q Consensus 291 ~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~------~~~~~~Q~~WL~~~ 364 (558)
.|+++++||||.... .......... ..+ ..+.+++++|+.+++... .....+|++|+ +.
T Consensus 53 ~p~~~v~GNHD~~~~-----~~~~~~~~~~-------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~ 117 (188)
T cd07392 53 VPVLAVPGNCDTPEI-----LGLLTSAGLN-------LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GR 117 (188)
T ss_pred CCEEEEcCCCCCHHH-----HHhhhcCcEe-------cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hh
Confidence 899999999997411 1111000000 011 235578899999987421 13357899998 45
Q ss_pred HhhcccCCCCEEEEEeCCcccccCCC-cccchHHHHHHHHHHHHHcCCcEEEECcccCce
Q 008663 365 LANVEREVTPWLVATWHAPWYSTYKA-HYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (558)
Q Consensus 365 L~~~~~~~~~wvIv~~H~P~y~s~~~-~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (558)
|... ..+.+|+++|+|++..... .......-.+++.+++++++++++|+||+|.-.
T Consensus 118 l~~~---~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 118 LNNL---LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred hhcc---CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 5442 2235899999998763111 111111224678889999999999999999864
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.59 E-value=1.5e-14 Score=143.79 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=106.9
Q ss_pred EEEEEecCCCCCCh---H----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008663 210 RIAIVGDVGLTYNT---T----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (558)
Q Consensus 210 rfavigD~g~~~~~---~----~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (558)
||++++|+|..... . ..++.+.+.++|+||++||++.. .. +...+.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~------~~--------------------~~~~~~~ 54 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND------FQ--------------------RSLPFIE 54 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccc------hh--------------------hHHHHHH
Confidence 68999999965322 2 24455666789999999999942 00 1112233
Q ss_pred hhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCC----------
Q 008663 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFD---------- 352 (558)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~---------- 352 (558)
.+..+ ...|++.++||||...... +..+.+.+. + ....+.++.+..++++|++++...++.
T Consensus 55 ~l~~~-~~~pv~~v~GNHD~~~~~~---~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~ 125 (239)
T TIGR03729 55 KLQEL-KGIKVTFNAGNHDMLKDLT---YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEI 125 (239)
T ss_pred HHHHh-cCCcEEEECCCCCCCCCCC---HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHH
Confidence 33322 4689999999999852211 122222110 0 011223334445778888888432210
Q ss_pred ---------------------CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCC------CcccchH--HHHHHHH
Q 008663 353 ---------------------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYK------AHYREAE--CMRVAME 403 (558)
Q Consensus 353 ---------------------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~------~~~~~~~--~~r~~l~ 403 (558)
...+|++||++.|++...+ .+|+++|+|+..... ..+.... ...+.+.
T Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~---~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~ 202 (239)
T TIGR03729 126 LRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNK---QVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFG 202 (239)
T ss_pred HHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCC---CEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHH
Confidence 1367899999999886432 278888888754211 1121111 1137889
Q ss_pred HHHHHcCCcEEEECcccCce
Q 008663 404 DLLYKYGVDVVFNGHVHAYE 423 (558)
Q Consensus 404 ~ll~~~~VdlvlsGH~H~ye 423 (558)
+++++++++++|+||+|.-.
T Consensus 203 ~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 203 QLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHhCCCEEEECCccCCC
Confidence 99999999999999999765
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.52 E-value=2.1e-13 Score=138.85 Aligned_cols=179 Identities=25% Similarity=0.331 Sum_probs=117.2
Q ss_pred eEEEEEecCCCC--CC-hH----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008663 209 SRIAIVGDVGLT--YN-TT----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (558)
Q Consensus 209 ~rfavigD~g~~--~~-~~----~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (558)
+||++++|.|.. .. .. .+++.+...+||++|++||++.. |. ....+...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~------~~------------------~~~~~~~~ 56 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND------GE------------------PEEYRRLK 56 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC------CC------------------HHHHHHHH
Confidence 489999999988 22 22 23455566789999999999963 32 12334455
Q ss_pred HhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEe-CeEEEEEEcCccc----CCCcHH
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNA-GGIHFLMLAAYVS----FDKSGD 356 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~-G~v~fI~LDt~~~----~~~~~~ 356 (558)
++++......|++++|||||..... ...+...+.... ..+..... ++++++.+|+... ...+..
T Consensus 57 ~~l~~~~~~~~~~~vpGNHD~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~ 125 (301)
T COG1409 57 ELLARLELPAPVIVVPGNHDARVVN----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAE 125 (301)
T ss_pred HHHhhccCCCceEeeCCCCcCCchH----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHH
Confidence 6666445578999999999986322 222322221111 11111222 6789999999754 235799
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcC--CcEEEECcccCc
Q 008663 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVHAY 422 (558)
Q Consensus 357 Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H~y 422 (558)
|++||++.|++........+|+++|+|+.................+..++..++ |+++|+||.|.-
T Consensus 126 q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 126 QLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 999999999986543112468888888776443332222333456777888888 999999999976
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.50 E-value=2.4e-13 Score=124.02 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=91.1
Q ss_pred EEEEecCCCCCChH-----------HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHH
Q 008663 211 IAIVGDVGLTYNTT-----------STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY 279 (558)
Q Consensus 211 favigD~g~~~~~~-----------~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~ 279 (558)
|++++|+|...... ..++.+.+.++|+|+++||+++. +. +.+|+.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~------~~------------------~~~~~~ 56 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQR------GL------------------PEEFEE 56 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCC------CC------------------HHHHHH
Confidence 57899999875421 12334456789999999999963 22 234566
Q ss_pred HHHhhhhhhcc-CCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHH
Q 008663 280 WGRYMQPVLSK-VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQY 358 (558)
Q Consensus 280 ~~~~l~~l~~~-~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~ 358 (558)
+.++++.+... .|++.++||||.
T Consensus 57 ~~~~~~~l~~~~~~~~~v~GNHD~-------------------------------------------------------- 80 (144)
T cd07400 57 AREFLDALPAPLEPVLVVPGNHDV-------------------------------------------------------- 80 (144)
T ss_pred HHHHHHHccccCCcEEEeCCCCeE--------------------------------------------------------
Confidence 66777776533 699999999996
Q ss_pred HHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCc
Q 008663 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGP 438 (558)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~ 438 (558)
|+++|+|++......... ...++.+.+++.+++++++++||+|........ ...+++
T Consensus 81 ------------------iv~~Hhp~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~----~~~~~~ 137 (144)
T cd07400 81 ------------------IVVLHHPLVPPPGSGRER-LLDAGDALKLLAEAGVDLVLHGHKHVPYVGNIS----NAGGGL 137 (144)
T ss_pred ------------------EEEecCCCCCCCcccccc-CCCHHHHHHHHHHcCCCEEEECCCCCcCeeecc----CCCCCE
Confidence 788898887654321111 114677999999999999999999987655311 124566
Q ss_pred EEEEeCC
Q 008663 439 VHITVGD 445 (558)
Q Consensus 439 vyiv~G~ 445 (558)
+++.+|+
T Consensus 138 ~~~~aGs 144 (144)
T cd07400 138 VVIGAGT 144 (144)
T ss_pred EEEecCC
Confidence 6776664
No 25
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.49 E-value=4.7e-14 Score=109.71 Aligned_cols=43 Identities=40% Similarity=0.678 Sum_probs=32.2
Q ss_pred CCCCCccceeeCCcceEEEEEecCCeEEEEEEEecCCcceeeeEE
Q 008663 496 DRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQI 540 (558)
Q Consensus 496 ~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~~~d~~~~~~D~~ 540 (558)
.++|+|+++|+.+|||++|+|.|.|||+|||++++|+ +|+|+|
T Consensus 20 ~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g--~v~D~f 62 (62)
T PF14008_consen 20 YPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDG--SVLDEF 62 (62)
T ss_dssp SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS---T-CEE-
T ss_pred CCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCC--cEecCC
Confidence 4679999999999999999999999999999999877 899997
No 26
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.44 E-value=1.7e-12 Score=127.33 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=110.5
Q ss_pred CeEEEEEecCCCCCCh-----HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008663 208 PSRIAIVGDVGLTYNT-----TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (558)
Q Consensus 208 ~~rfavigD~g~~~~~-----~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (558)
++||++++|+|..... .+.++.+.+.+||+|+++||+++.. . ... +.+.+
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~------~------------------~~~-~~~~~ 55 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGS------V------------------DVL-ELLLE 55 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCc------c------------------hhh-HHHHH
Confidence 4799999999987532 3445566667899999999999632 1 000 23445
Q ss_pred hhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHHH
Q 008663 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLE 362 (558)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~ 362 (558)
.++.+....|+++++||||....... .+....+...+. ...+.+..++.++..+..+.-.. .....+++.
T Consensus 56 ~l~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~ 125 (223)
T cd07385 56 LLKKLKAPLGVYAVLGNHDYYSGDEE-NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVDD----GLGRRPDLE 125 (223)
T ss_pred HHhccCCCCCEEEECCCcccccCchH-HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEeccC----ccccCCCHH
Confidence 56666667999999999998643221 101111111111 11233455666654443332110 112234566
Q ss_pred HHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCc----------
Q 008663 363 EDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYT---------- 432 (558)
Q Consensus 363 ~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~---------- 432 (558)
+.+++.++ ..+.|++.|.|.+.. .+.+.++|++++||+|..|...|.....
T Consensus 126 ~~~~~~~~--~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~ 186 (223)
T cd07385 126 KALKGLDE--DDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYD 186 (223)
T ss_pred HHHhCCCC--CCCEEEEecCCChhH-----------------HhcccCccEEEeccCCCCEEeccccccccchhhcCccc
Confidence 66666433 346899999985421 1256799999999999998766533210
Q ss_pred ----cCCCCcEEEEeCCCcc
Q 008663 433 ----LDPCGPVHITVGDGGN 448 (558)
Q Consensus 433 ----~~~~g~vyiv~G~gG~ 448 (558)
...+..+||..|.|..
T Consensus 187 ~G~~~~~~~~~~Vs~G~G~~ 206 (223)
T cd07385 187 YGLYRKGGSQLYVSRGLGTW 206 (223)
T ss_pred ceEEEECCEEEEEcCCccCC
Confidence 1223466777777655
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.42 E-value=5.4e-13 Score=124.91 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=87.8
Q ss_pred EEEEecCCCCCChHHHH--HHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008663 211 IAIVGDVGLTYNTTSTV--SHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (558)
Q Consensus 211 favigD~g~~~~~~~~l--~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (558)
|+++||+|......... +.+.+.++|+++++||+++.. . ...+.. ......
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~------~------------------~~~~~~---~~~~~~ 53 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLT------D------------------APRFAP---LLLALK 53 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCc------c------------------hHHHHH---HHHhhc
Confidence 57899999875433222 223456899999999998521 1 011211 222334
Q ss_pred ccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCC-cHHHHHHHHHHHhh
Q 008663 289 SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDK-SGDQYKWLEEDLAN 367 (558)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~-~~~Q~~WL~~~L~~ 367 (558)
...|+++++||||.. +.|+...-..++.. +.++.+|+.++++
T Consensus 54 ~~~~v~~v~GNHD~~------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~- 96 (166)
T cd07404 54 GFEPVIYVPGNHEFY------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR- 96 (166)
T ss_pred CCccEEEeCCCcceE------------------------------------EEEEeeecccccCccchHHHHhCCCCCC-
Confidence 578999999999984 12222211111111 2345566666554
Q ss_pred cccCCCCEEEEEeCCcccccCCCc---cc-chHHHHHHHHHHHHHcCCcEEEECcccCceee
Q 008663 368 VEREVTPWLVATWHAPWYSTYKAH---YR-EAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (558)
Q Consensus 368 ~~~~~~~wvIv~~H~P~y~s~~~~---~~-~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (558)
+.+||++|+|++...... .. .....++.+.+++++++|+++++||+|.....
T Consensus 97 ------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 ------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred ------CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 237888999887653221 11 11244566778888899999999999987544
No 28
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.40 E-value=7e-12 Score=131.33 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=67.2
Q ss_pred CceEEEEE-eCeE--EEEEEcCccc-----------CCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCc---
Q 008663 329 SKFYYSFN-AGGI--HFLMLAAYVS-----------FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAH--- 391 (558)
Q Consensus 329 ~~~yYsf~-~G~v--~fI~LDt~~~-----------~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~--- 391 (558)
+..||+|+ .|++ |||+||+... ...+.+|++||+++|+++.+ +.+++|+++|+|+.+.....
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhh
Confidence 34599999 5855 9999998641 12469999999999998753 45789999999987622111
Q ss_pred cc----------chHHHHHHHHHHHHHc-CCcEEEECcccCce
Q 008663 392 YR----------EAECMRVAMEDLLYKY-GVDVVFNGHVHAYE 423 (558)
Q Consensus 392 ~~----------~~~~~r~~l~~ll~~~-~VdlvlsGH~H~ye 423 (558)
+. .....-.+|.++|.+| +|.++|+||.|...
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~ 412 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNT 412 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCccccc
Confidence 11 0001124799999999 68899999999643
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.40 E-value=2.9e-12 Score=125.26 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=105.0
Q ss_pred EEEEEecCCCCCCh----------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccch
Q 008663 210 RIAIVGDVGLTYNT----------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (558)
Q Consensus 210 rfavigD~g~~~~~----------------~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y 273 (558)
||++++|+|..... .++++.+.+.++|+||++||++.... ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~----~~------------------ 58 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNN----PS------------------ 58 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCC----CC------------------
Confidence 68999999987431 22334445679999999999985321 00
Q ss_pred hHHHHHHHHhhhhhh-ccCCceeecCCCccccCccchhhHhhhhccCCCCC--CCCCCCceEEEEEeCeEEEEEEcCccc
Q 008663 274 QPRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK--ESGSLSKFYYSFNAGGIHFLMLAAYVS 350 (558)
Q Consensus 274 ~~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~--~~~~~~~~yYsf~~G~v~fI~LDt~~~ 350 (558)
...+..+.+.++.+. ..+|+++++||||....... .........+... ...........++.+++.|+.++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~ 136 (223)
T cd00840 59 PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRR 136 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCCCcccccc--ccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCH
Confidence 123445556666654 47999999999998743211 1111110000000 000111223334455688888875422
Q ss_pred CCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceee
Q 008663 351 FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (558)
Q Consensus 351 ~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (558)
. ....+.++++..+.+.. ...+.|++.|.|+.......... .....+.+...++|++++||.|..+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~~--~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 137 S-RLRDLLADAELRPRPLD--PDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred H-HHHHHHHHHHHHhhccC--CCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 1 12334445455555443 34468999999986543221110 123344556778999999999988654
No 30
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.38 E-value=9e-12 Score=122.78 Aligned_cols=178 Identities=20% Similarity=0.200 Sum_probs=115.7
Q ss_pred EEEEEecCCCCCChHHHHHHHH----hCCCCEEEEcCCcccccccccCCCCCc--cccccCCCCCCccchhHHHHHHH--
Q 008663 210 RIAIVGDVGLTYNTTSTVSHMI----SNRPDLILLVGDVTYANLYLTNGTGSD--CYACSFANSPIHETYQPRWDYWG-- 281 (558)
Q Consensus 210 rfavigD~g~~~~~~~~l~~l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~--~~~~~~~~~~~~e~Y~~~wd~~~-- 281 (558)
||++.+|.+...........+. +.+||++|++||.+|++.......... .-..........+.|+.++..+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5889999887766655555554 679999999999999974311100000 00000001123345555555553
Q ss_pred HhhhhhhccCCceeecCCCccccCccc----------------hhhHhhhhccCCCCCCCC--CCCceEEEEEeCeE-EE
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYEEQAEN----------------RTFVAYTSRFAFPSKESG--SLSKFYYSFNAGGI-HF 342 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~----------------~~~~~y~~~f~~P~~~~~--~~~~~yYsf~~G~v-~f 342 (558)
..++.+.+++|++.++++||+..+... ...++|.+..+.+..... .....|++|.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 346777789999999999999866432 223456666555544332 34678999999996 99
Q ss_pred EEEcCcccCCCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcC--CcEEEECccc
Q 008663 343 LMLAAYVSFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVH 420 (558)
Q Consensus 343 I~LDt~~~~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H 420 (558)
++||++... ..|......|+++..++.+.+ --++|||++|
T Consensus 161 ~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999998754 334445566788888766654 3388999999
Q ss_pred Cceee
Q 008663 421 AYERS 425 (558)
Q Consensus 421 ~yeR~ 425 (558)
..+..
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 76554
No 31
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.38 E-value=6.6e-11 Score=118.41 Aligned_cols=211 Identities=20% Similarity=0.333 Sum_probs=117.4
Q ss_pred CCeEEEEEecCCCCCC--------------------hHHHHHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCC
Q 008663 207 YPSRIAIVGDVGLTYN--------------------TTSTVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFA 265 (558)
Q Consensus 207 ~~~rfavigD~g~~~~--------------------~~~~l~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~ 265 (558)
.+|||+.++|+|.... ....++++. .++||||+++||+++....
T Consensus 52 g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--------------- 116 (379)
T KOG1432|consen 52 GTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--------------- 116 (379)
T ss_pred CceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc---------------
Confidence 3799999999998643 123455554 5799999999999974210
Q ss_pred CCCCccchhHHHHHHHHhhhhhh-ccCCceeecCCCccccCccchhhHhhhhccC--CCCCCCCCCCceEEEEEeCe---
Q 008663 266 NSPIHETYQPRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFA--FPSKESGSLSKFYYSFNAGG--- 339 (558)
Q Consensus 266 ~~~~~e~Y~~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~--~P~~~~~~~~~~yYsf~~G~--- 339 (558)
..++ ..+.+.++|.. .++||.+++||||-+..........+....+ +++..+ ..+..+.-..+|+
T Consensus 117 -----~Da~---~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p-~dg~~~~~~g~gnyn~ 187 (379)
T KOG1432|consen 117 -----QDAA---TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNP-PDGHMYIIDGFGNYNL 187 (379)
T ss_pred -----HhHH---HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCC-cccceeeeecccceEE
Confidence 0112 23445566643 7999999999999875543333333333221 111110 0111111111221
Q ss_pred ---------------EEEEEEcCcccC----------CCcHHHHHHHHHHHhhc---ccCCCC-EEEEEeCCcccc--cC
Q 008663 340 ---------------IHFLMLAAYVSF----------DKSGDQYKWLEEDLANV---EREVTP-WLVATWHAPWYS--TY 388 (558)
Q Consensus 340 ---------------v~fI~LDt~~~~----------~~~~~Q~~WL~~~L~~~---~~~~~~-wvIv~~H~P~y~--s~ 388 (558)
..++.||+..+- .....|.+||+..-.+- +..-.| --++++|.|+-. .-
T Consensus 188 ~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~ 267 (379)
T KOG1432|consen 188 QIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLEL 267 (379)
T ss_pred EeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhc
Confidence 234556653221 13578999999877331 112222 367889999632 11
Q ss_pred CC------cccch---HHHHHHHHHHHH-HcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 389 KA------HYREA---ECMRVAMEDLLY-KYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 389 ~~------~~~~~---~~~r~~l~~ll~-~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
.. ..++. ......+...|. ..+|++|++||+|...--.+. .+.+++.=|+|+.
T Consensus 268 ~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaG 330 (379)
T KOG1432|consen 268 ESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAG 330 (379)
T ss_pred cCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCc
Confidence 11 11111 112345566666 678999999999987765542 3436666555444
No 32
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.37 E-value=3.1e-11 Score=118.06 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=101.2
Q ss_pred CeEEEEEecCCCCCChH-HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhh
Q 008663 208 PSRIAIVGDVGLTYNTT-STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (558)
Q Consensus 208 ~~rfavigD~g~~~~~~-~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (558)
+.||++++|+|...... +.++.+.+.++|+||++||+++. +. . ......+.+.++.
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~------g~-------------~----~~~~~~~l~~l~~ 60 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPK------AA-------------K----SEDYAAFFRILGE 60 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCC------CC-------------C----HHHHHHHHHHHHh
Confidence 57999999999753322 23333445689999999999962 21 0 0112233333333
Q ss_pred hhccCCceeecCCCccccCccchhhH-hhhhccCCCCCCCCCCCceEEEEEe-CeEEEEEEcCcccC--CCcHHHH----
Q 008663 287 VLSKVPIMVVEGNHEYEEQAENRTFV-AYTSRFAFPSKESGSLSKFYYSFNA-GGIHFLMLAAYVSF--DKSGDQY---- 358 (558)
Q Consensus 287 l~~~~P~~~v~GNHD~~~~~~~~~~~-~y~~~f~~P~~~~~~~~~~yYsf~~-G~v~fI~LDt~~~~--~~~~~Q~---- 358 (558)
+ ..|+++++||||... ..... .|......|... .....+ ..+ |+++|+.|+....+ ...++|.
T Consensus 61 l--~~pv~~V~GNhD~~v---~~~l~~~~~~~~~~p~~~--~lh~~~--~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~ 131 (224)
T cd07388 61 A--HLPTFYVPGPQDAPL---WEYLREAYNAELVHPEIR--NVHETF--AFWRGPYLVAGVGGEIADEGEPEEHEALRYP 131 (224)
T ss_pred c--CCceEEEcCCCChHH---HHHHHHHhcccccCccce--ecCCCe--EEecCCeEEEEecCCcCCCCCcCHHHHhhhh
Confidence 3 589999999999630 01111 111111112210 011112 334 56999999865433 2345542
Q ss_pred HHHHH-HHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECccc
Q 008663 359 KWLEE-DLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVH 420 (558)
Q Consensus 359 ~WL~~-~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H 420 (558)
.||.+ .|+...+...+..|+++|+|+|.....+ .. ...+.+++++++..++++||+|
T Consensus 132 ~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h-~G----S~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 132 AWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNE-QG----SHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCc-cC----HHHHHHHHHHhCCCEEEEcCCc
Confidence 56433 2222211123358999999999874323 22 3567788999999999999999
No 33
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.35 E-value=2.1e-11 Score=123.52 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=96.5
Q ss_pred CeEEEEEecCCCCCC-----hHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008663 208 PSRIAIVGDVGLTYN-----TTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (558)
Q Consensus 208 ~~rfavigD~g~~~~-----~~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (558)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.+ . ...++.+.+
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~------~------------------~~~~~~~~~ 104 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFD------M------------------PLNFSAFSD 104 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCC------c------------------cccHHHHHH
Confidence 699999999998632 12344556677999999999998521 1 012334556
Q ss_pred hhhhhhccCCceeecCCCccccCcc-chhhHhhhhccCCCCCCCCCCCceEEEEEeCe--EEEEEEcCcccCCCcHHHHH
Q 008663 283 YMQPVLSKVPIMVVEGNHEYEEQAE-NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGG--IHFLMLAAYVSFDKSGDQYK 359 (558)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~-~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~--v~fI~LDt~~~~~~~~~Q~~ 359 (558)
.++.+.+..|+++|+||||+..... .+.+....+.-.+ .-..+....+..++ +.++.+|........
T Consensus 105 ~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~~~~~----- 174 (271)
T PRK11340 105 VLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWAGQCK----- 174 (271)
T ss_pred HHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhccCCC-----
Confidence 6777766689999999999853211 1112222221111 01123344555443 667777642111111
Q ss_pred HHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeec
Q 008663 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRV 428 (558)
Q Consensus 360 WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v 428 (558)
..+.+++ . ...|++.|.|-+- +.+.+.++|++||||+|.-|...|.
T Consensus 175 -~~~~~~~----~-~~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 175 -PPPASEA----N-LPRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred -hhHhcCC----C-CCeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 1112221 2 2488999999542 1234578999999999998876553
No 34
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.27 E-value=4.4e-11 Score=105.40 Aligned_cols=116 Identities=29% Similarity=0.500 Sum_probs=81.7
Q ss_pred EEEecCCCCCChHHHH---HHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008663 212 AIVGDVGLTYNTTSTV---SHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (558)
Q Consensus 212 avigD~g~~~~~~~~l---~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (558)
+++||+|......... ....+.++|+|+++||+++.. .. ..+..+........
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~------~~------------------~~~~~~~~~~~~~~ 56 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDG------PD------------------PEEVLAAALALLLL 56 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCC------CC------------------chHHHHHHHHHhhc
Confidence 3689999876544333 234457899999999999732 10 11222222333344
Q ss_pred ccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHHHHHHhhc
Q 008663 289 SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANV 368 (558)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~~ 368 (558)
...|+++++||||
T Consensus 57 ~~~~~~~~~GNHD------------------------------------------------------------------- 69 (131)
T cd00838 57 LGIPVYVVPGNHD------------------------------------------------------------------- 69 (131)
T ss_pred CCCCEEEeCCCce-------------------------------------------------------------------
Confidence 6899999999999
Q ss_pred ccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeee
Q 008663 369 EREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (558)
Q Consensus 369 ~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (558)
|+++|.|++.............+..+..++.+.+++++|+||.|.+.+..
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 88999998776433222222257888899999999999999999999874
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.12 E-value=3.2e-09 Score=104.27 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=101.2
Q ss_pred eEEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008663 209 SRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (558)
Q Consensus 209 ~rfavigD~g~~~~~~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (558)
+||+++||+|..... ...+.+.+.+||+|+++||++.. . . .+.+.+..+
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~-------~-------------------~---~~~~~l~~l- 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNE-------S-------------------V---QLVRAISSL- 49 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcC-------h-------------------H---HHHHHHHhC-
Confidence 589999999976443 23345566789999999999831 0 0 122333333
Q ss_pred ccCCceeecCCCccccCccc-hhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCccc----------------C
Q 008663 289 SKVPIMVVEGNHEYEEQAEN-RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS----------------F 351 (558)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~----------------~ 351 (558)
..|++++.||||....... .....+.+....-.+ .--.|=..++....+.++.++.. |
T Consensus 50 -~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg~----~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~f 124 (238)
T cd07397 50 -PLPKAVILGNHDAWYDATFRKKGDRVQEQLELLGD----LHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVY 124 (238)
T ss_pred -CCCeEEEcCCCcccccccccchHHHHHHHHHHhCC----cEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHh
Confidence 4789999999998643211 012223322211110 00001111122222233333210 1
Q ss_pred --CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCC-------------cccchHHHHHHHHHHHHHcCCcEEEE
Q 008663 352 --DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKA-------------HYREAECMRVAMEDLLYKYGVDVVFN 416 (558)
Q Consensus 352 --~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~-------------~~~~~~~~r~~l~~ll~~~~Vdlvls 416 (558)
..-.+-.+.+-+.++..+... + .|++.|.++....+. .......+++++..+-..-.++++++
T Consensus 125 gi~s~~eA~~~ive~~~~~~~~~-~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~f 202 (238)
T cd07397 125 GVISLEESAQRIIAAAKKAPPDL-P-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVF 202 (238)
T ss_pred CCCCHHHHHHHHHHHhhhcCCCC-C-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEe
Confidence 011222334444443333222 2 688899998654311 11123566777765553345899999
Q ss_pred CcccCceeeeeccC--CccCCCCcEEEEe
Q 008663 417 GHVHAYERSNRVYN--YTLDPCGPVHITV 443 (558)
Q Consensus 417 GH~H~yeR~~~v~~--~~~~~~g~vyiv~ 443 (558)
||+|.--|...-.. ...+.+|++|+..
T Consensus 203 GH~H~~l~~~~~~r~~~~~~~~gt~y~N~ 231 (238)
T cd07397 203 GHMHHRLRRGKGLRNMIAVDREGTVYLNA 231 (238)
T ss_pred CCccCcccccccccceeeecCCCeEEEec
Confidence 99996533221000 1135678999853
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.10 E-value=7.9e-10 Score=99.90 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=73.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhc
Q 008663 210 RIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLS 289 (558)
Q Consensus 210 rfavigD~g~~~~~~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~ 289 (558)
||+++||+|.... .+...++|+++++||++.. +. ...++.+.++++.+
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~------~~------------------~~~~~~~~~~l~~~-- 48 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTER------GT------------------LEELQKFLDWLKSL-- 48 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCC------CC------------------HHHHHHHHHHHHhC--
Confidence 5899999997644 2334589999999999852 11 12233444455544
Q ss_pred cCC-ceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHHHHHHhhc
Q 008663 290 KVP-IMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANV 368 (558)
Q Consensus 290 ~~P-~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~~ 368 (558)
..| +++++||||....
T Consensus 49 ~~~~~~~v~GNHD~~~~--------------------------------------------------------------- 65 (135)
T cd07379 49 PHPHKIVIAGNHDLTLD--------------------------------------------------------------- 65 (135)
T ss_pred CCCeEEEEECCCCCcCC---------------------------------------------------------------
Confidence 233 5789999996310
Q ss_pred ccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCce
Q 008663 369 EREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (558)
Q Consensus 369 ~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (558)
.. .+.|++.|.|++............-.+.+.+++.+++++++|+||+|...
T Consensus 66 -~~--~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 66 -PE--DTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred -CC--CCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 01 23688889998765322111011112456677788899999999999874
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.03 E-value=1.4e-09 Score=100.01 Aligned_cols=137 Identities=21% Similarity=0.368 Sum_probs=81.1
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhh
Q 008663 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (558)
Q Consensus 209 ~rfavigD~g~~~~~-~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (558)
+||+++||+|..... .+.++.+ +++|+|+++||++.. .++.+.++.+
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------------------------~~~~~~~~~~ 48 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------------------------EEVLELLRDI 48 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------------------------HHHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------------------------HHHHHHHhcC
Confidence 589999999986432 2345555 579999999999731 1223333333
Q ss_pred hccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHHHHHHhh
Q 008663 288 LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLAN 367 (558)
Q Consensus 288 ~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~ 367 (558)
|++++.||||.. .+....... . +..
T Consensus 49 ----~~~~v~GNHD~~---------~~~~~~~~~---------~---------------------------------~~~ 73 (156)
T PF12850_consen 49 ----PVYVVRGNHDNW---------AFPNENDEE---------Y---------------------------------LLD 73 (156)
T ss_dssp ----EEEEE--CCHST---------HHHSEECTC---------S---------------------------------SHS
T ss_pred ----CEEEEeCCcccc---------cchhhhhcc---------c---------------------------------ccc
Confidence 899999999963 121111000 0 111
Q ss_pred -cccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCC
Q 008663 368 -VEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDG 446 (558)
Q Consensus 368 -~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~g 446 (558)
.......+.|++.|...+.... ..+.+..++...+++++++||.|..+... .+++.++..|+-
T Consensus 74 ~~~~~~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~ 137 (156)
T PF12850_consen 74 ALRLTIDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSI 137 (156)
T ss_dssp EEEEEETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GS
T ss_pred ceeeeecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcC
Confidence 0001123578888887665321 12345577789999999999999988763 467888888876
Q ss_pred cc
Q 008663 447 GN 448 (558)
Q Consensus 447 G~ 448 (558)
+.
T Consensus 138 ~~ 139 (156)
T PF12850_consen 138 GG 139 (156)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 38
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.97 E-value=5.8e-09 Score=105.75 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=56.5
Q ss_pred CeEEEEEecCCCCCChH---HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008663 208 PSRIAIVGDVGLTYNTT---STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (558)
Q Consensus 208 ~~rfavigD~g~~~~~~---~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (558)
++||++++|+|...... +.+..+....||+|+++||++..+ .. ..+..+.+.+
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~-----~~-------------------~~~~~~~~~L 99 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGD-----RP-------------------PGVAALALFL 99 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCC-----CC-------------------CCHHHHHHHH
Confidence 68999999999875542 344455567889999999999631 00 2345667778
Q ss_pred hhhhccCCceeecCCCccccCc
Q 008663 285 QPVLSKVPIMVVEGNHEYEEQA 306 (558)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~ 306 (558)
+++.+..++++++||||+....
T Consensus 100 ~~L~~~~gv~av~GNHd~~~~~ 121 (284)
T COG1408 100 AKLKAPLGVFAVLGNHDYGVDR 121 (284)
T ss_pred HhhhccCCEEEEeccccccccc
Confidence 8888899999999999997543
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.95 E-value=9.2e-09 Score=102.39 Aligned_cols=198 Identities=17% Similarity=0.194 Sum_probs=102.3
Q ss_pred eEEEEEecCCCCCChHH----HHHHHH--hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008663 209 SRIAIVGDVGLTYNTTS----TVSHMI--SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (558)
Q Consensus 209 ~rfavigD~g~~~~~~~----~l~~l~--~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (558)
+|+++++|+|....... .++.+. +.++|+|+++||++.. + .|.. .. .+......+
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~--~--~g~~-----------~~----~~~~~~~~~ 61 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEA--W--IGDD-----------DP----SPFAREIAA 61 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceecc--c--cccC-----------cC----CHHHHHHHH
Confidence 47999999998754322 233332 3589999999999952 1 1110 00 011223345
Q ss_pred hhhhhhc-cCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHH
Q 008663 283 YMQPVLS-KVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361 (558)
Q Consensus 283 ~l~~l~~-~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL 361 (558)
.++.+.. .+|+++++||||.... ..+.+...+.. -.....+++++.++++.-.... ...+..++++
T Consensus 62 ~l~~l~~~g~~v~~v~GNHD~~~~------~~~~~~~g~~~------l~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~ 128 (241)
T PRK05340 62 ALKALSDSGVPCYFMHGNRDFLLG------KRFAKAAGMTL------LPDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRF 128 (241)
T ss_pred HHHHHHHcCCeEEEEeCCCchhhh------HHHHHhCCCEE------eCCcEEEEECCEEEEEECCccc-ccCCHHHHHH
Confidence 5555543 4899999999997421 12222221100 1112346677777766644321 1123445555
Q ss_pred HHHHhhcccCCCCEEEEEeCCcccccCCC-------------c--cc-chHHHHHHHHHHHHHcCCcEEEECcccCceee
Q 008663 362 EEDLANVEREVTPWLVATWHAPWYSTYKA-------------H--YR-EAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (558)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s~~~-------------~--~~-~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (558)
++.+... |...++|.+++..... . .. -.....+.+.+++.+++++++++||+|.-...
T Consensus 129 r~~~r~~------~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 129 RRKVRNP------WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HHHHhCH------HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCccee
Confidence 4444431 1122222222211000 0 00 00011246778889999999999999986543
Q ss_pred eeccCCccCCCCcEEEEeCCCcc
Q 008663 426 NRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 426 ~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
. +.+ +..+..|++.|+...
T Consensus 203 ~-~~~---~~~~~~~~~lgdw~~ 221 (241)
T PRK05340 203 Q-LQA---GGQPATRIVLGDWHE 221 (241)
T ss_pred e-ccC---CCcceEEEEeCCCCC
Confidence 2 101 111246899998843
No 40
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.93 E-value=7.8e-09 Score=98.47 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=32.2
Q ss_pred EEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeee
Q 008663 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (558)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (558)
|+++|.|+..... ..+..++.+++++++|+||.|.+.+..
T Consensus 112 i~lsH~P~~~~~~----------~~~~~~~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 112 IMLSHVPLLAEGG----------QALKHVVTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred eeeeccccccccc----------HHHHHHHHhcCceEEEEcCccceeeEE
Confidence 8899999876432 266778889999999999999887653
No 41
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.90 E-value=8.2e-09 Score=95.33 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=38.1
Q ss_pred EEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 375 WLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 375 wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
++|++.|.+....... .+. ..++.+.++|++++||+|...... .+++.+|..|+.|.
T Consensus 76 ~~i~v~Hg~~~~~~~~-------~~~--~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~ 132 (155)
T cd00841 76 KRIFLTHGHLYGVKNG-------LDR--LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSL 132 (155)
T ss_pred EEEEEECCcccccccc-------hhh--hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccC
Confidence 3677888776543211 011 455677899999999999765442 35778888887665
No 42
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.83 E-value=3.7e-07 Score=86.56 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 401 AMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 401 ~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
.+..++.+.++|++++||+|...... .+|..+|..|+.|.
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~ 136 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATG 136 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCC
Confidence 34455667889999999999765542 35788888888764
No 43
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.81 E-value=1.2e-07 Score=102.15 Aligned_cols=179 Identities=19% Similarity=0.271 Sum_probs=104.8
Q ss_pred HHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCceeecCCCcc
Q 008663 225 STVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEY 302 (558)
Q Consensus 225 ~~l~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~ 302 (558)
.++++|.++ ++|||+++||++-.+.+. ...+.--.......+.|......+|++++.||||.
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~----------------~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~ 262 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWA----------------QTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEI 262 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchh----------------hhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCC
Confidence 356666654 489999999999654221 00110011122333456666789999999999999
Q ss_pred ccCcc-------ch-----hhHhhhhcc--CCCCCC-CCCCCceEEEEE-eCeEEEEEEcCcccC----------CCcHH
Q 008663 303 EEQAE-------NR-----TFVAYTSRF--AFPSKE-SGSLSKFYYSFN-AGGIHFLMLAAYVSF----------DKSGD 356 (558)
Q Consensus 303 ~~~~~-------~~-----~~~~y~~~f--~~P~~~-~~~~~~~yYsf~-~G~v~fI~LDt~~~~----------~~~~~ 356 (558)
..... .. .|..+...| -+|... .....+.||.-. .+|.++|+||+..-+ .....
T Consensus 263 ~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~ 342 (577)
T KOG3770|consen 263 HPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPID 342 (577)
T ss_pred CcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchH
Confidence 74321 01 011111111 133321 122344566544 689999999986322 23578
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcC--CcEEEECcccCceee
Q 008663 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVHAYERS 425 (558)
Q Consensus 357 Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H~yeR~ 425 (558)
|++||..+|.+++.++. -|-+++|.|.-...- .+.-...+-.++.++. +...|.||.|.-+-.
T Consensus 343 ~lqWf~~~L~~ae~~Ge-kVhil~HIPpG~~~c-----~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 343 QLQWFVDQLQEAESAGE-KVHILGHIPPGDGVC-----LEGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred HhhHHHHHHHHHHhcCC-EEEEEEeeCCCCcch-----hhhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 89999999999765544 377889999754210 0111233445555553 445799999976643
No 44
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.80 E-value=3.2e-08 Score=91.84 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=33.0
Q ss_pred HhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh---ccCCceeecCCCccc
Q 008663 231 ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL---SKVPIMVVEGNHEYE 303 (558)
Q Consensus 231 ~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~---~~~P~~~v~GNHD~~ 303 (558)
.+.+||+|+++||++... ... . ...|..+...+..+. ...|++.++||||..
T Consensus 35 ~~~~pd~vv~~GDl~~~~------~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 35 WLLQPDVVFVLGDLFDEG------KWS--------------T-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HhcCCCEEEECCCCCCCC------ccC--------------C-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 356899999999999531 100 0 134544333333322 258999999999985
No 45
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.77 E-value=7.2e-08 Score=89.50 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.2
Q ss_pred eEEEEEecCCCCCChHHH-HHHHHhC-CCCEEEEcCCcc
Q 008663 209 SRIAIVGDVGLTYNTTST-VSHMISN-RPDLILLVGDVT 245 (558)
Q Consensus 209 ~rfavigD~g~~~~~~~~-l~~l~~~-~pDfvl~~GDl~ 245 (558)
+|++++||+|......+. ++.+... ++|.|+++||++
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 489999999976543333 3334445 799999999997
No 46
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.74 E-value=6.1e-08 Score=86.98 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=32.3
Q ss_pred EEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceee
Q 008663 376 LVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (558)
Q Consensus 376 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (558)
.|+++|+|++...... .....-.+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~-~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGE-DFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCcc-cccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 5777888876433211 001112456778888999999999999976554
No 47
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.72 E-value=1.2e-07 Score=89.31 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.1
Q ss_pred EEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeee
Q 008663 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (558)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (558)
|++.|.|.+. ++.+.+++++|+||.|.+-+..
T Consensus 119 i~l~H~p~~~------------------~~~~~~~~~~lsGH~H~~~~~~ 150 (171)
T cd07384 119 ILLTHIPLYR------------------LLDTIKPVLILSGHDHDQCEVV 150 (171)
T ss_pred eeEECCccHH------------------HHhccCceEEEeCcccCCeEEE
Confidence 8899999632 5677799999999999986654
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.72 E-value=4.9e-07 Score=89.43 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 400 VAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 400 ~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
+.+++++.+++++++++||+|.-+.. +..+ +..+..|++.|+...
T Consensus 175 ~~~~~~~~~~~~~~~i~GHtH~~~~~-~~~~---~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 175 AEVAAVMRRYGVDRLIHGHTHRPAIH-PLQA---DGQPATRIVLGDWYR 219 (231)
T ss_pred HHHHHHHHHcCCCEEEECCccCccee-eccc---CCCccEEEEECCCcc
Confidence 45677788899999999999987654 2211 223568999999843
No 49
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.72 E-value=1.9e-07 Score=85.61 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=43.1
Q ss_pred CCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEe
Q 008663 373 TPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITV 443 (558)
Q Consensus 373 ~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~ 443 (558)
..-.|||.|.|+++..... ..+.+++++++|+.++.||.|.-.|-.+-+. +-.|+.|+.+
T Consensus 158 ~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p~~~~s---~v~Gi~y~Lv 217 (230)
T COG1768 158 VSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRPNIGFS---NVRGIEYMLV 217 (230)
T ss_pred cCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCCCCCcc---cccCceEEEE
Confidence 3458999999999865332 3566788899999999999999887643222 2246766654
No 50
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.69 E-value=2.7e-07 Score=88.31 Aligned_cols=194 Identities=21% Similarity=0.311 Sum_probs=88.5
Q ss_pred CeEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCcccc-----ccCCCCC-Cc--cchhH-HH
Q 008663 208 PSRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYA-----CSFANSP-IH--ETYQP-RW 277 (558)
Q Consensus 208 ~~rfavigD~g~~~~~-~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~-----~~~~~~~-~~--e~Y~~-~w 277 (558)
+-|++.++|.+..... .+.+..+...++|.|+++||+.-.. +. .+.|. ...|+.+ +. +.|+. ..
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~-----a~-~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAE-----AR-SDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TC-----HH-HHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccc-----hh-hhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 4589999998754322 2333444556999999999997421 11 11110 1111100 00 11111 13
Q ss_pred HHHHHhhhhhhccCCceeecCCCccccCccchhh-HhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccC-CC--
Q 008663 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTF-VAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF-DK-- 353 (558)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~-~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~-~~-- 353 (558)
+.+++.+..+ .+|.+++|||||.... ..+ .+|....-.|.-- . -..-+.+.-|..-|+.+..+... ..
T Consensus 79 ~~ff~~L~~~--~~p~~~vPG~~Dap~~---~~lr~a~~~e~v~p~~~--~-vH~sf~~~~g~y~v~G~GGeI~~~~~~~ 150 (255)
T PF14582_consen 79 DKFFRILGEL--GVPVFVVPGNMDAPER---FFLREAYNAEIVTPHIH--N-VHESFFFWKGEYLVAGMGGEITDDQREE 150 (255)
T ss_dssp HHHHHHHHCC---SEEEEE--TTS-SHH---HHHHHHHHCCCC-TTEE--E--CTCEEEETTTEEEEEE-SEEESSS-BC
T ss_pred HHHHHHHHhc--CCcEEEecCCCCchHH---HHHHHHhccceecccee--e-eeeeecccCCcEEEEecCccccCCCccc
Confidence 3555555555 8999999999998421 111 2233222222100 0 00112233345778877764321 11
Q ss_pred ------cHHHHHHHHHHHhhcccCCCCEEEEEeCCcc-cccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCce
Q 008663 354 ------SGDQYKWLEEDLANVEREVTPWLVATWHAPW-YSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (558)
Q Consensus 354 ------~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~-y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (558)
-....+|..+.|..++ ..-+|+++|.|+ +.....+.+. +.+.+++++|+.+++|+||+|--.
T Consensus 151 ~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~GS-----~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 151 EFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHVGS-----AAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp SSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTTSB-----HHHHHHHHHH--SEEEE-SSS-EE
T ss_pred cccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCcccccH-----HHHHHHHHhcCCcEEEecccccch
Confidence 1223455555666643 234788899998 4443233222 567789999999999999999654
No 51
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.64 E-value=6.2e-07 Score=86.05 Aligned_cols=191 Identities=18% Similarity=0.239 Sum_probs=110.0
Q ss_pred CeEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhh
Q 008663 208 PSRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (558)
Q Consensus 208 ~~rfavigD~g~~~~~-~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (558)
.+|+++++|+|..... .+.++.+...++|+++.+||++|.+ .|.. ...-+.. + ++.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~----~~~~-------------~~~~~~~---~---~e~ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFH----FGPK-------------EVAEELN---K---LEA 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhh----cCch-------------HHHHhhh---H---HHH
Confidence 5899999999987543 3344444556899999999999543 2221 0000000 1 333
Q ss_pred hh-ccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCc------ccCCCcH-HHH
Q 008663 287 VL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAY------VSFDKSG-DQY 358 (558)
Q Consensus 287 l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~------~~~~~~~-~Q~ 358 (558)
+. ..+|+++++||-|-.. .... .......- .+ -..+++++.|+.+.-. +.+...+ +-+
T Consensus 60 l~~~~~~v~avpGNcD~~~-----v~~~-l~~~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~ 125 (226)
T COG2129 60 LKELGIPVLAVPGNCDPPE-----VIDV-LKNAGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIY 125 (226)
T ss_pred HHhcCCeEEEEcCCCChHH-----HHHH-HHhccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHH
Confidence 33 5899999999987631 1111 11111110 01 4577788888775321 1112223 334
Q ss_pred HHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccc-hHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCC
Q 008663 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-AECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCG 437 (558)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g 437 (558)
.-|++-+.+.+... .|+.+|.|+|........+ ...-..++.+++++.+..+.++||+|-+.-.- .-+.
T Consensus 126 s~l~~~v~~~~~~~---~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d-------~iG~ 195 (226)
T COG2129 126 SKLKSLVKKADNPV---NILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGID-------KIGN 195 (226)
T ss_pred HHHHHHHhcccCcc---eEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeeccccccc-------ccCC
Confidence 44555555543221 3999999999875442222 11224677788899999999999999854442 1234
Q ss_pred cEEEEeCC
Q 008663 438 PVHITVGD 445 (558)
Q Consensus 438 ~vyiv~G~ 445 (558)
++.|..|.
T Consensus 196 TivVNPG~ 203 (226)
T COG2129 196 TIVVNPGP 203 (226)
T ss_pred eEEECCCC
Confidence 55555555
No 52
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.61 E-value=4.6e-07 Score=90.61 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=91.2
Q ss_pred eEEEEEecCCCCC-------Ch---HHHHHHHHhCCCC-EEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008663 209 SRIAIVGDVGLTY-------NT---TSTVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (558)
Q Consensus 209 ~rfavigD~g~~~-------~~---~~~l~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (558)
++|++++|+|... +. ...++++.+.++| +++..||++....... + ...
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~--------------------~-~~~ 59 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST--------------------A-TKG 59 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh--------------------c-cCC
Confidence 5899999999553 11 2455666666787 7899999985321100 0 000
Q ss_pred HHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCC---C----C---CCCCCceEEEEEeCeEE--EEEE
Q 008663 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K----E---SGSLSKFYYSFNAGGIH--FLML 345 (558)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~---~~~~~~~yYsf~~G~v~--fI~L 345 (558)
....+.++.+ -.-++++||||+.... ..+.........|. + . .......|.-++.++++ |+.+
T Consensus 60 ~~~~~~l~~~---g~d~~~~GNHe~d~g~--~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~ 134 (252)
T cd00845 60 EANIELMNAL---GYDAVTIGNHEFDYGL--DALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGL 134 (252)
T ss_pred cHHHHHHHhc---CCCEEeeccccccccH--HHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEe
Confidence 1122333332 3456788999986332 23333333333221 0 0 00112335567778754 4554
Q ss_pred cCcccCC----------CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH-cCCcEE
Q 008663 346 AAYVSFD----------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (558)
Q Consensus 346 Dt~~~~~----------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~Vdlv 414 (558)
.+..... ......+.+++..+. .+.+...+|++.|.+.... . .+.++ .+||+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vIvl~H~g~~~~------------~---~la~~~~giDlv 198 (252)
T cd00845 135 TTPDTPTYTPLGWIIGLPFEDLAEAVAVAEEL-LAEGADVIILLSHLGLDDD------------E---ELAEEVPGIDVI 198 (252)
T ss_pred ccccceeecCCCcccCceecCHHHHHHHHHHH-HhCCCCEEEEEeccCccch------------H---HHHhcCCCccEE
Confidence 4321100 001122334332222 2245678999999886531 1 12222 589999
Q ss_pred EECcccCceee
Q 008663 415 FNGHVHAYERS 425 (558)
Q Consensus 415 lsGH~H~yeR~ 425 (558)
|+||.|.....
T Consensus 199 lggH~H~~~~~ 209 (252)
T cd00845 199 LGGHTHHLLEE 209 (252)
T ss_pred EcCCcCcccCC
Confidence 99999987543
No 53
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.59 E-value=1.3e-07 Score=90.06 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=25.0
Q ss_pred EEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeee
Q 008663 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (558)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (558)
|++.|.|.+. ...+.+++++||||+|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEEE
Confidence 8899999765 2223579999999999887764
No 54
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.54 E-value=1.7e-06 Score=86.94 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=98.5
Q ss_pred eEEEEEecCCCCC-----------ChHHHHHHHHhCCCC-EEEEcCCcccccccccCCCCCccccccCCCCCCccchhHH
Q 008663 209 SRIAIVGDVGLTY-----------NTTSTVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPR 276 (558)
Q Consensus 209 ~rfavigD~g~~~-----------~~~~~l~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~ 276 (558)
++|++++|+|.-. .....++++.+.+++ +++.+||++...... . + .+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~-------------------~-~-~~ 59 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLS-------------------T-A-TK 59 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccch-------------------h-h-cC
Confidence 4677888877211 012345555556787 899999998432110 0 0 00
Q ss_pred HHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCC----------CCCCCCceEEEEEeCeEEE--EE
Q 008663 277 WDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK----------ESGSLSKFYYSFNAGGIHF--LM 344 (558)
Q Consensus 277 wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~----------~~~~~~~~yYsf~~G~v~f--I~ 344 (558)
.....+.|+.+ . .-+.++||||+... ...+........+|-- +.-..-+.|.-++.+++++ |.
T Consensus 60 g~~~~~~l~~l--~-~d~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG 134 (257)
T cd07406 60 GKQMVPVLNAL--G-VDLACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLG 134 (257)
T ss_pred CccHHHHHHhc--C-CcEEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEE
Confidence 11222334433 2 23678999999532 2233333333322210 0001124677788888554 55
Q ss_pred EcCcccC------C---CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH-cCCcEE
Q 008663 345 LAAYVSF------D---KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (558)
Q Consensus 345 LDt~~~~------~---~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~Vdlv 414 (558)
+.+.... . .-..-.+.+++.+++..+.+..-+|++.|-+.... + ++.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d-----------~----~la~~~~~iD~I 199 (257)
T cd07406 135 LVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLPND-----------K----RLAREVPEIDLI 199 (257)
T ss_pred EecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchhh-----------H----HHHHhCCCCceE
Confidence 5443211 0 01122334444443433456778999999975311 1 23333 379999
Q ss_pred EECcccCceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 415 FNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 415 lsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
|+||.|..+.. ..+++.-+-+|.-|.
T Consensus 200 lgGH~H~~~~~--------~~~~t~vv~~g~~g~ 225 (257)
T cd07406 200 LGGHDHEYILV--------QVGGTPIVKSGSDFR 225 (257)
T ss_pred EecccceeEee--------eECCEEEEeCCcCcc
Confidence 99999987622 123555555555544
No 55
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.54 E-value=3.3e-06 Score=85.87 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=93.6
Q ss_pred eEEEEEecCCCCCC-----------------hHHHHHHHHhCCCCEEEE-cCCcccccccccCCCCCccccccCCCCCCc
Q 008663 209 SRIAIVGDVGLTYN-----------------TTSTVSHMISNRPDLILL-VGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (558)
Q Consensus 209 ~rfavigD~g~~~~-----------------~~~~l~~l~~~~pDfvl~-~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (558)
++|++.+|+|.... ....++++.+.+++.+++ +||++....+.. +....
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~-------~~~~~------ 67 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLAD-------YYAKI------ 67 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHH-------Hhhhc------
Confidence 47888888886421 123445555567887665 999985321100 00000
Q ss_pred cchhHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCC-------C-CCCCCceEEEEEeC-eEE
Q 008663 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------E-SGSLSKFYYSFNAG-GIH 341 (558)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~-~~~~~~~yYsf~~G-~v~ 341 (558)
+ ........+.|+.+ .. -+.++||||+... ...+....+...+|-- . .......|.-++.+ +++
T Consensus 68 ~--~~~~~~~~~~ln~~--g~-d~~~lGNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~k 140 (277)
T cd07410 68 E--DGDPHPMIAAMNAL--GY-DAGTLGNHEFNYG--LDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVK 140 (277)
T ss_pred c--cCCCChHHHHHHhc--CC-CEEeecccCcccC--HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCE
Confidence 0 00001123344444 33 3667899998632 2334444443333310 0 01112356667888 855
Q ss_pred EEEEc--Cccc--C-----------CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHH
Q 008663 342 FLMLA--AYVS--F-----------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLL 406 (558)
Q Consensus 342 fI~LD--t~~~--~-----------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll 406 (558)
+-++. +... . ....+..++..++|++ .+...+|+++|........... ..+.....+.
T Consensus 141 VgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~----~~~~~~~~la 213 (277)
T cd07410 141 VGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESL----TGENAAYELA 213 (277)
T ss_pred EEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccccc----CCccHHHHHH
Confidence 54443 3210 0 0112233444444443 4567899999998765321000 0112223444
Q ss_pred HH-cCCcEEEECcccCcee
Q 008663 407 YK-YGVDVVFNGHVHAYER 424 (558)
Q Consensus 407 ~~-~~VdlvlsGH~H~yeR 424 (558)
++ .+||++|+||.|....
T Consensus 214 ~~~~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 214 EEVPGIDAILTGHQHRRFP 232 (277)
T ss_pred hcCCCCcEEEeCCCccccc
Confidence 44 4899999999997543
No 56
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.53 E-value=6.8e-07 Score=87.11 Aligned_cols=194 Identities=19% Similarity=0.259 Sum_probs=97.5
Q ss_pred EEEecCCCCCChH---HHHHHHHh----CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008663 212 AIVGDVGLTYNTT---STVSHMIS----NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (558)
Q Consensus 212 avigD~g~~~~~~---~~l~~l~~----~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (558)
++++|+|.+.... .....+.+ .++|.++++||++.. +. +... .....+ ...+...+
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~--~~--~~~~----------~~~~~~---~~~~~~l~ 63 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDL--WF--GDDE----------VVPPAA---HEVLAALL 63 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEE--Ee--cCCC----------CCChHH---HHHHHHHH
Confidence 4789999875432 22333322 489999999999952 11 1100 000111 11123444
Q ss_pred hhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcccCCCcHHHHHHHHHH
Q 008663 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEED 364 (558)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~ 364 (558)
+......+++.++||||.... .+ +..+..... .......+.+++.+++++-... ++.....+.|+...
T Consensus 64 ~~~~~~~~v~~v~GNHD~~~~----~~--~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~ 131 (217)
T cd07398 64 RLADRGTRVYYVPGNHDFLLG----DF--FAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRL 131 (217)
T ss_pred HHHHCCCeEEEECCCchHHHH----hH--HHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHH
Confidence 445568999999999998521 11 111111100 0111214677888888776542 22333444444443
Q ss_pred HhhcccCCCCEEEEEeCCc---------ccc------cCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeecc
Q 008663 365 LANVEREVTPWLVATWHAP---------WYS------TYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVY 429 (558)
Q Consensus 365 L~~~~~~~~~wvIv~~H~P---------~y~------s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~ 429 (558)
+...... +.++..+.. ... .............+.+..++.+++++++++||+|......
T Consensus 132 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~--- 205 (217)
T cd07398 132 GRNPYDQ---LLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHE--- 205 (217)
T ss_pred hCcHHHH---HHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEE---
Confidence 2210000 000000000 000 0000011123345666777888999999999999876653
Q ss_pred CCccCCCCcEEEEeCC
Q 008663 430 NYTLDPCGPVHITVGD 445 (558)
Q Consensus 430 ~~~~~~~g~vyiv~G~ 445 (558)
..+..|+.+|+
T Consensus 206 -----~~~~~~~n~G~ 216 (217)
T cd07398 206 -----LDGKLYINLGD 216 (217)
T ss_pred -----ECCEEEEECCC
Confidence 23778888886
No 57
>PRK09453 phosphodiesterase; Provisional
Probab=98.50 E-value=1.6e-06 Score=82.52 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=45.8
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhh
Q 008663 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (558)
Q Consensus 209 ~rfavigD~g~~~~~-~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (558)
+|++++||+|..... .+.++.+.+.++|.++++||++.. |.. .+..+.|+ .+...+.++.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~------~~~----------~~~~~~~~--~~~~~~~l~~~ 62 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYH------GPR----------NPLPEGYA--PKKVAELLNAY 62 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEccccccc------CcC----------CCCccccC--HHHHHHHHHhc
Confidence 489999999965332 234445556789999999999852 110 01111222 12233334333
Q ss_pred hccCCceeecCCCccc
Q 008663 288 LSKVPIMVVEGNHEYE 303 (558)
Q Consensus 288 ~~~~P~~~v~GNHD~~ 303 (558)
..+++.+.||||..
T Consensus 63 --~~~v~~V~GNhD~~ 76 (182)
T PRK09453 63 --ADKIIAVRGNCDSE 76 (182)
T ss_pred --CCceEEEccCCcch
Confidence 46899999999974
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.50 E-value=8.5e-06 Score=86.68 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.0
Q ss_pred CeEEEEEecCCCCCCh---------H----HHHHHHHhCCCCEEEEcCCcccc
Q 008663 208 PSRIAIVGDVGLTYNT---------T----STVSHMISNRPDLILLVGDVTYA 247 (558)
Q Consensus 208 ~~rfavigD~g~~~~~---------~----~~l~~l~~~~pDfvl~~GDl~Y~ 247 (558)
.+||++++|+|.+... . ++++.+.+.++|+||++||+...
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~ 55 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHE 55 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 5899999999986321 1 23344456799999999999964
No 59
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.32 E-value=2.8e-05 Score=73.07 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=28.8
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCccc
Q 008663 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTY 246 (558)
Q Consensus 209 ~rfavigD~g~~~~~-~~~l~~l~~~~pDfvl~~GDl~Y 246 (558)
.+|+++||+|..... ....+.....++|+|||+||.+.
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~ 40 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTS 40 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCC
Confidence 589999999987532 23333444579999999999995
No 60
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.29 E-value=1.6e-05 Score=80.32 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=87.8
Q ss_pred HHHHHHhC-CCCEE-EEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCceeecCCCccc
Q 008663 226 TVSHMISN-RPDLI-LLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 226 ~l~~l~~~-~pDfv-l~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
.++++.+. .+|.+ +.+||+....... +..+.....+.|+. +++.++.||||+.
T Consensus 41 ~v~~~~~~~~~~~l~l~~GD~~~gs~~~---------------------~~~~g~~~~~~l~~----~g~da~~GNHefd 95 (264)
T cd07411 41 LIKRIRAERNPNTLLLDGGDTWQGSGEA---------------------LYTRGQAMVDALNA----LGVDAMVGHWEFT 95 (264)
T ss_pred HHHHHHHhcCCCeEEEeCCCccCCChHH---------------------hhcCChhHHHHHHh----hCCeEEecccccc
Confidence 45555556 78876 6799998532110 00011122233333 4555555999986
Q ss_pred cCccchhhHhhhhccCCCCCCC-------C-CCCceEEEEEeCeE--EEEEEcCcccCC----------CcHHHHHHHHH
Q 008663 304 EQAENRTFVAYTSRFAFPSKES-------G-SLSKFYYSFNAGGI--HFLMLAAYVSFD----------KSGDQYKWLEE 363 (558)
Q Consensus 304 ~~~~~~~~~~y~~~f~~P~~~~-------~-~~~~~yYsf~~G~v--~fI~LDt~~~~~----------~~~~Q~~WL~~ 363 (558)
.. ...+....+...+|--.. + .....|.-++.+++ -||.+.+..... ......+.+++
T Consensus 96 ~g--~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (264)
T cd07411 96 YG--PERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQE 173 (264)
T ss_pred cC--HHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHH
Confidence 32 233344444443332100 0 01123556778874 456665431100 01223445555
Q ss_pred HHhhcc-cCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH-cCCcEEEECcccCceeeeeccCCccCCCCcEEE
Q 008663 364 DLANVE-REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHI 441 (558)
Q Consensus 364 ~L~~~~-~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyi 441 (558)
.+++.. +.+...+|++.|-+.... + .+.++ .+||++|+||.|..... |. ..-++++.+
T Consensus 174 ~~~~~~~~~~~D~iI~l~H~g~~~~-----------~----~la~~~~~iDlilgGH~H~~~~~-~~----~~~~~t~v~ 233 (264)
T cd07411 174 VVVKLRREEGVDVVVLLSHNGLPVD-----------V----ELAERVPGIDVILSGHTHERTPK-PI----IAGGGTLVV 233 (264)
T ss_pred HHHHHHHhCCCCEEEEEecCCchhh-----------H----HHHhcCCCCcEEEeCcccccccC-cc----cccCCEEEE
Confidence 544332 245678999999885321 1 22233 47999999999965322 10 012455555
Q ss_pred EeCCCcc
Q 008663 442 TVGDGGN 448 (558)
Q Consensus 442 v~G~gG~ 448 (558)
-+|.-|.
T Consensus 234 ~~g~~~~ 240 (264)
T cd07411 234 EAGSHGK 240 (264)
T ss_pred EcCcccc
Confidence 5555544
No 61
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.28 E-value=3.9e-05 Score=76.73 Aligned_cols=192 Identities=17% Similarity=0.282 Sum_probs=102.2
Q ss_pred EEEEEecCCCCCChHH---HHHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhh
Q 008663 210 RIAIVGDVGLTYNTTS---TVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (558)
Q Consensus 210 rfavigD~g~~~~~~~---~l~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (558)
||+++||.=....... .+.++. +.++||++..||++-. |... . + ...+.|.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~g------g~gl------------~---~----~~~~~L~ 55 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAG------GKGI------------T---P----KIAKELL 55 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccC------CCCC------------C---H----HHHHHHH
Confidence 5889999865543332 344444 3478999999999842 2110 0 1 1223333
Q ss_pred hhhccCCceeecCCCccccCccchhhHhhhhccC---CCCCC-CCCCCceEEEEEeCeEEEEEEc--CcccCCCcHHHHH
Q 008663 286 PVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFA---FPSKE-SGSLSKFYYSFNAGGIHFLMLA--AYVSFDKSGDQYK 359 (558)
Q Consensus 286 ~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~---~P~~~-~~~~~~~yYsf~~G~v~fI~LD--t~~~~~~~~~Q~~ 359 (558)
.+ .+- +++.|||++... ....+.+... .|.+- .+.....|+-++.+++++-+++ +.........-++
T Consensus 56 ~~--G~D-~iTlGNH~fD~g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~ 128 (255)
T cd07382 56 SA--GVD-VITMGNHTWDKK----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFR 128 (255)
T ss_pred hc--CCC-EEEecccccCcc----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHH
Confidence 33 333 455699999743 2233332221 11111 1122345777888876654444 2221111112234
Q ss_pred HHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcE
Q 008663 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPV 439 (558)
Q Consensus 360 WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~v 439 (558)
-+++.+++.++ ++..+||.+|.-..+ .+.++.. ..+-+||+++.||.|..---. .+-|+|+.
T Consensus 129 ~~~~~v~~lk~-~~D~IIV~~H~g~ts-----------Ek~ala~-~ldg~VdvIvGtHTHv~t~d~-----~il~~gTa 190 (255)
T cd07382 129 AADELLEELKE-EADIIFVDFHAEATS-----------EKIALGW-YLDGRVSAVVGTHTHVQTADE-----RILPGGTA 190 (255)
T ss_pred HHHHHHHHHhc-CCCEEEEEECCCCCH-----------HHHHHHH-hCCCCceEEEeCCCCccCCcc-----EEeeCCeE
Confidence 45566665543 567899999984211 1122221 113369999999999753221 11368999
Q ss_pred EEE-eCCCcccCC
Q 008663 440 HIT-VGDGGNREK 451 (558)
Q Consensus 440 yiv-~G~gG~~~~ 451 (558)
||+ .|.-|...+
T Consensus 191 ~itd~Gm~G~~~s 203 (255)
T cd07382 191 YITDVGMTGPYDS 203 (255)
T ss_pred EEecCccccCCCc
Confidence 988 477776543
No 62
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.27 E-value=5.3e-06 Score=88.55 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=49.9
Q ss_pred eEEEEEecCCCC-CC--h-----------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008663 209 SRIAIVGDVGLT-YN--T-----------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (558)
Q Consensus 209 ~rfavigD~g~~-~~--~-----------~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (558)
+||++.+|+|.+ .. . ...++.+.+.++||||++||+...... ..
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~P------------------s~---- 58 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNP------------------SP---- 58 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCC------------------CH----
Confidence 589999999998 21 1 123455567899999999999964211 11
Q ss_pred HHHHHHHHhhhhhh-ccCCceeecCCCcccc
Q 008663 275 PRWDYWGRYMQPVL-SKVPIMVVEGNHEYEE 304 (558)
Q Consensus 275 ~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~ 304 (558)
..-..+.+.++.+. .++|++++.||||...
T Consensus 59 ~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 59 RALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 11123444555553 5899999999999864
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.26 E-value=1.5e-05 Score=80.13 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=91.4
Q ss_pred eEEEEEecCCCCCC--------hH---HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008663 209 SRIAIVGDVGLTYN--------TT---STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (558)
Q Consensus 209 ~rfavigD~g~~~~--------~~---~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (558)
++|++++|+|.... .. ..++++.+...++++..||++..... ... ...
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-------------------~~~--~~g 59 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-------------------SDL--DKG 59 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-------------------hhh--cCC
Confidence 47899999996421 11 23344443456899999999853211 000 001
Q ss_pred HHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCC-------CCCC-CCceEEEEEeC-e--EEEEEEc
Q 008663 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------ESGS-LSKFYYSFNAG-G--IHFLMLA 346 (558)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~~~~-~~~~yYsf~~G-~--v~fI~LD 346 (558)
....+.|+.+ ..-+ +++||||+.. +...+..+.+...+|-- +.+. .-..|.-++.+ + +-||.+-
T Consensus 60 ~~~~~~ln~~--g~d~-~~~GNHefd~--G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~ 134 (257)
T cd07408 60 ETIIKIMNAV--GYDA-VTPGNHEFDY--GLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLT 134 (257)
T ss_pred cHHHHHHHhc--CCcE-EccccccccC--CHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeec
Confidence 1222334433 3334 5689999863 23344444444444421 0010 11235555677 6 4556655
Q ss_pred Cccc-C--C----C---cHHHHHHHHHH-HhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH-cCCcEE
Q 008663 347 AYVS-F--D----K---SGDQYKWLEED-LANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (558)
Q Consensus 347 t~~~-~--~----~---~~~Q~~WL~~~-L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~Vdlv 414 (558)
+... . . . ...-.+-+++. ..+..+.+..-+|++.|.+....... +. .. ++..+ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~~-----~~---~la~~~~giDvI 205 (257)
T cd07408 135 TPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-WT-----ST---ELAANVTGIDLI 205 (257)
T ss_pred CcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-cc-----HH---HHHHhCCCceEE
Confidence 4210 0 0 0 01112233333 22222345778999999887653211 11 11 22223 489999
Q ss_pred EECcccCceee
Q 008663 415 FNGHVHAYERS 425 (558)
Q Consensus 415 lsGH~H~yeR~ 425 (558)
|.||.|.....
T Consensus 206 igGH~H~~~~~ 216 (257)
T cd07408 206 IDGHSHTTIEI 216 (257)
T ss_pred EeCCCcccccC
Confidence 99999987543
No 64
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.25 E-value=3.2e-05 Score=77.77 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=98.5
Q ss_pred EEEEecCCCCCChHHHH---HHHHh---CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008663 211 IAIVGDVGLTYNTTSTV---SHMIS---NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (558)
Q Consensus 211 favigD~g~~~~~~~~l---~~l~~---~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (558)
|+|.||.|.. ....+ +.+.+ .++|++|++||+.-.. +....++-+ ....|+ .+..|.+++
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~----~~~d~~~~~-------~p~k~~-~~~~f~~~~ 66 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVR----NEADLKCMA-------VPPKYR-KMGDFYKYY 66 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcC----Ccchhhhhc-------cchhhh-hhhhHHHHh
Confidence 5899999974 33333 33322 3689999999995211 111100100 111221 244455554
Q ss_pred hhhh-ccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEE-----EEEeCeEEEEEEcCcc---cCCC--
Q 008663 285 QPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYY-----SFNAGGIHFLMLAAYV---SFDK-- 353 (558)
Q Consensus 285 ~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----sf~~G~v~fI~LDt~~---~~~~-- 353 (558)
+... ..+|+++|.||||.. ..+.. ++... ....+.+| .+++++++|..|.... ++..
T Consensus 67 ~g~~~~p~~t~fi~GNHE~~-----~~l~~------l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~ 134 (262)
T cd00844 67 SGEKKAPILTIFIGGNHEAS-----NYLWE------LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGH 134 (262)
T ss_pred cCCccCCeeEEEECCCCCCH-----HHHHh------hcCCC-eecCcEEEecCCCEEEECCeEEEEeccccccccccccc
Confidence 4432 577889999999963 11111 11100 00123333 4567889999887632 1111
Q ss_pred ------cHHHHHHHH-------HHHhhcccCCCCEEEEEeCCcccccCCCcccc------------h---HHHHHHHHHH
Q 008663 354 ------SGDQYKWLE-------EDLANVEREVTPWLVATWHAPWYSTYKAHYRE------------A---ECMRVAMEDL 405 (558)
Q Consensus 354 ------~~~Q~~WL~-------~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~------------~---~~~r~~l~~l 405 (558)
...+++.+. +.|.... . +--|+++|.|+.......... . ..-...+.++
T Consensus 135 ~~~~~~t~~~~rs~y~~r~~~~~kl~~~~-~--~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~l 211 (262)
T cd00844 135 FERPPYSEDTKRSAYHVRNIEVFKLKQLK-Q--PIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEEL 211 (262)
T ss_pred ccCCCCCHHHHHHhhhhhHHHHHHHHhcC-C--CCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHH
Confidence 223333211 1122221 1 236999999987643211000 0 0012457789
Q ss_pred HHHcCCcEEEECcccC-ceeeee
Q 008663 406 LYKYGVDVVFNGHVHA-YERSNR 427 (558)
Q Consensus 406 l~~~~VdlvlsGH~H~-yeR~~~ 427 (558)
+++.+....|+||.|. |++..|
T Consensus 212 l~~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 212 LKHLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred HHHhCCCEEEEecCCcccceecC
Confidence 9999999999999998 666643
No 65
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.18 E-value=4.1e-05 Score=78.30 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=45.1
Q ss_pred HHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH--cCCcEEEECcccCceeeeeccCCccCCC
Q 008663 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK--YGVDVVFNGHVHAYERSNRVYNYTLDPC 436 (558)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~--~~VdlvlsGH~H~yeR~~~v~~~~~~~~ 436 (558)
+.+++.+++.++.+...+|++.|........... .+.......+++.+ .+||++|+||.|....... ...+
T Consensus 178 e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~-----~~~~ 250 (288)
T cd07412 178 EAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTV-----PAGN 250 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCccccccc-----cCcC
Confidence 4455555544434577899999987653221100 00011122334444 3799999999998754310 0124
Q ss_pred CcEEEEeCCCcc
Q 008663 437 GPVHITVGDGGN 448 (558)
Q Consensus 437 g~vyiv~G~gG~ 448 (558)
++..+-+|+-|.
T Consensus 251 ~~~v~q~g~~g~ 262 (288)
T cd07412 251 PRLVTQAGSYGK 262 (288)
T ss_pred CEEEEecChhhc
Confidence 666666666555
No 66
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.13 E-value=0.0002 Score=72.93 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=100.9
Q ss_pred CeEEEEEecCCCCCC--------------hHHHHHHHH----hCCCC-EEEEcCCcccccccccCCCCCccccccCCCCC
Q 008663 208 PSRIAIVGDVGLTYN--------------TTSTVSHMI----SNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSP 268 (558)
Q Consensus 208 ~~rfavigD~g~~~~--------------~~~~l~~l~----~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~ 268 (558)
.++|++.+|+|.... ..+.++++. +.+++ ++|..||.+....+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~------------------ 66 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGL------------------ 66 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeec------------------
Confidence 689999999996421 012233332 23455 67889999953211
Q ss_pred CccchhHHHHHHHHhhhhhhccCCceeecCCCccccCcc-chhhHhhhhccCCCCC--------CCCC---CCceEEEEE
Q 008663 269 IHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAE-NRTFVAYTSRFAFPSK--------ESGS---LSKFYYSFN 336 (558)
Q Consensus 269 ~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~-~~~~~~y~~~f~~P~~--------~~~~---~~~~yYsf~ 336 (558)
...+...+....+.|+.+. -=.+++||||+..... ...+..+.+...+|-- +.+. ....|.-++
T Consensus 67 -~~~~~~~g~~~~~~mN~mg---yDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~ 142 (282)
T cd07407 67 -SDASPPPGSYSNPIFRMMP---YDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFT 142 (282)
T ss_pred -eeeecCCChHHHHHHHhcC---CcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEE
Confidence 1111012223344454441 2357899999963211 1222223232222210 0001 112356667
Q ss_pred eC-eEE--EEEEcCccc-------CCC--cHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHH
Q 008663 337 AG-GIH--FLMLAAYVS-------FDK--SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMED 404 (558)
Q Consensus 337 ~G-~v~--fI~LDt~~~-------~~~--~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ 404 (558)
.+ +++ +|.+-+... +.. ...+.+|+.+.|++ .+...+|+++|....... +. .+....
T Consensus 143 ~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~~---~~~~~~ 211 (282)
T cd07407 143 TKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----EF---KVLHDA 211 (282)
T ss_pred cCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----cH---HHHHHH
Confidence 66 655 555543211 011 12333488777774 346679999999865431 11 111122
Q ss_pred HHHHc-CCc-EEEECcccCceeeeeccCCccCCCCcEEEEeCCCccc
Q 008663 405 LLYKY-GVD-VVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGNR 449 (558)
Q Consensus 405 ll~~~-~Vd-lvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG~~ 449 (558)
+.++. ++| ++|.||.|...... + .+|+..+-.|.-|..
T Consensus 212 la~~~~~id~~Ii~GHsH~~~~~~-~------~~~~~ivq~G~~g~~ 251 (282)
T cd07407 212 IRKIFPDTPIQFLGGHSHVRDFTQ-Y------DSSSTGLESGRYLET 251 (282)
T ss_pred HHHhCCCCCEEEEeCCccccccee-c------cCcEEEEeccchhhc
Confidence 33444 577 79999999753321 1 245555555665553
No 67
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.13 E-value=0.0002 Score=71.99 Aligned_cols=194 Identities=18% Similarity=0.203 Sum_probs=104.7
Q ss_pred eEEEEEecCCCCCCh---HHHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008663 209 SRIAIVGDVGLTYNT---TSTVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (558)
Q Consensus 209 ~rfavigD~g~~~~~---~~~l~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (558)
+||+++||.=..... ...+.++.+ .++||++..||++-. |.+. . + ...+.|
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~g------G~Gi------------~---~----~~~~~L 55 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTH------GKGL------------T---L----KIYEFL 55 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCC------CCCC------------C---H----HHHHHH
Confidence 489999998543222 233444443 478999999999832 2111 0 1 112223
Q ss_pred hhhhccCCceeecCCCccccCccchhhHhh---hhccCCCCCCCCCCCceEEEEEeCeEEEEEEcC--cccCCC--cHHH
Q 008663 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAY---TSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAA--YVSFDK--SGDQ 357 (558)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y---~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt--~~~~~~--~~~Q 357 (558)
... .+-++.+ |||++....-....... ....++|.. ..+..|..++.++.++-+++- ...... ...-
T Consensus 56 ~~~--GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~P 129 (266)
T TIGR00282 56 KQS--GVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNP 129 (266)
T ss_pred Hhc--CCCEEEc-cchhccCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEECCCcccCCccccCCH
Confidence 322 4545554 99999743211111111 111123322 223346667778766555543 211111 1112
Q ss_pred HHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCC
Q 008663 358 YKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCG 437 (558)
Q Consensus 358 ~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g 437 (558)
++-+++.+++.++ +++.+||.+|---- .. +.....+.+.+|++|+.-|.|..---.++ =|+|
T Consensus 130 f~~~d~~i~~lk~-~~d~IIVd~Haeat-----------sE-K~a~~~~ldg~vsaVvGtHtHV~TaD~~i-----l~~g 191 (266)
T TIGR00282 130 FKVLKELINMLKK-DCDLIFVDFHAETT-----------SE-KNAFGMAFDGYVTAVVGTHTHVPTADLRI-----LPKG 191 (266)
T ss_pred HHHHHHHHHhhhc-CCCEEEEEeCCCCH-----------HH-HHHHHHHhCCCccEEEeCCCCCCCCccee-----CCCC
Confidence 2334555554433 36789999997531 11 33456677789999999999965332221 3689
Q ss_pred cEEEE-eCCCcccCC
Q 008663 438 PVHIT-VGDGGNREK 451 (558)
Q Consensus 438 ~vyiv-~G~gG~~~~ 451 (558)
+.||+ .|+-|...+
T Consensus 192 tayitD~Gm~G~~~s 206 (266)
T TIGR00282 192 TAYITDVGMTGPFGS 206 (266)
T ss_pred CEEEecCCcccCccc
Confidence 99998 588887654
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.05 E-value=0.00014 Score=87.82 Aligned_cols=184 Identities=19% Similarity=0.237 Sum_probs=95.7
Q ss_pred CCeEEEEEecCCCCCC-hH---HHHHHHHhCCCCEEEE-cCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008663 207 YPSRIAIVGDVGLTYN-TT---STVSHMISNRPDLILL-VGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (558)
Q Consensus 207 ~~~rfavigD~g~~~~-~~---~~l~~l~~~~pDfvl~-~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (558)
..++|++++|+|.... .. ..++++.+.+++.+++ +||++..... ... .++....
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-------------------~~~--~~g~~~~ 717 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-------------------SNL--LKGLPVL 717 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-------------------hhh--cCChHHH
Confidence 4699999999996542 22 3455555667887655 9999853210 000 0112223
Q ss_pred HhhhhhhccCCceeecCCCccccCccchhhHhhhhccC------------CCC-------CCCCC---CCceEEEEEeCe
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFA------------FPS-------KESGS---LSKFYYSFNAGG 339 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~------------~P~-------~~~~~---~~~~yYsf~~G~ 339 (558)
+.|+.+ -.-++++||||+.... ..+..+.+... +|- ...+. ....|.-++.++
T Consensus 718 ~~ln~l---g~d~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G 792 (1163)
T PRK09419 718 KMMKEM---GYDASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG 792 (1163)
T ss_pred HHHhCc---CCCEEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC
Confidence 334433 2346699999996332 22222222211 111 00111 123466678887
Q ss_pred EE--EEEEcCcc-cC--C-------CcHHHHHHHHHHHhhcc-cCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHH
Q 008663 340 IH--FLMLAAYV-SF--D-------KSGDQYKWLEEDLANVE-REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLL 406 (558)
Q Consensus 340 v~--fI~LDt~~-~~--~-------~~~~Q~~WL~~~L~~~~-~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll 406 (558)
++ ||.+-+.. .. . .-....+.+++..++.+ ..+...+|++.|.......... .....+|.
T Consensus 793 ~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~~-------~~~~~~lA 865 (1163)
T PRK09419 793 KKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTG-------EITGLELA 865 (1163)
T ss_pred EEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccccc-------ccHHHHHH
Confidence 54 55554421 00 0 01122334444444443 2457789999999875432111 11223444
Q ss_pred HHc-CCcEEEECcccCce
Q 008663 407 YKY-GVDVVFNGHVHAYE 423 (558)
Q Consensus 407 ~~~-~VdlvlsGH~H~ye 423 (558)
++. +||++|.||.|..-
T Consensus 866 ~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 866 KKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred HhCCCCCEEEeCCCCccc
Confidence 444 79999999999764
No 69
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.04 E-value=5.5e-05 Score=77.10 Aligned_cols=157 Identities=19% Similarity=0.311 Sum_probs=81.8
Q ss_pred HHHHHHhCCCC-EEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCceeecCCCcccc
Q 008663 226 TVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEE 304 (558)
Q Consensus 226 ~l~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~ 304 (558)
.++++.+..++ +++..||++...... ..+ +.....+.|+.+ ..- +.++||||+..
T Consensus 40 ~v~~~r~~~~~~l~ld~GD~~~gs~~~-------------------~~~--~g~~~~~~ln~~--g~D-~~~lGNHefd~ 95 (281)
T cd07409 40 LVKELRAENPNVLFLNAGDAFQGTLWY-------------------TLY--KGNADAEFMNLL--GYD-AMTLGNHEFDD 95 (281)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcchh-------------------hhc--CChHHHHHHHhc--CCC-EEEeccccccC
Confidence 34555455676 566799998532110 000 111223344443 333 55679999963
Q ss_pred CccchhhHhhhhccCCCCCC------C-----CCCCceEEEEEeCeEE--EEEEcCcccC---C--C---cHHHHHHHHH
Q 008663 305 QAENRTFVAYTSRFAFPSKE------S-----GSLSKFYYSFNAGGIH--FLMLAAYVSF---D--K---SGDQYKWLEE 363 (558)
Q Consensus 305 ~~~~~~~~~y~~~f~~P~~~------~-----~~~~~~yYsf~~G~v~--fI~LDt~~~~---~--~---~~~Q~~WL~~ 363 (558)
. ...+..+.+...+|--. . ......|.-++.++++ ||.+-+.... . . -....+.+++
T Consensus 96 G--~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~ 173 (281)
T cd07409 96 G--VEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQK 173 (281)
T ss_pred C--HHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHH
Confidence 3 23344443433333210 0 0112346667888855 4555432110 0 0 1233455666
Q ss_pred HHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH-cCCcEEEECcccCce
Q 008663 364 DLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAYE 423 (558)
Q Consensus 364 ~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~ye 423 (558)
.+++.++.+..-+|++.|-.... .+ ++.++ .+||++|+||.|...
T Consensus 174 ~v~~lr~~~~D~II~l~H~G~~~-----------d~----~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 174 EADKLKAQGVNKIIALSHSGYEV-----------DK----EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHHHHhcCCCEEEEEeccCchh-----------HH----HHHHcCCCCcEEEeCCcCccc
Confidence 66665545677899999987421 01 23333 479999999999864
No 70
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=8.2e-05 Score=72.35 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCCc
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGG 447 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~gG 447 (558)
.+...+.+++++||.+++||+|.-... +-.++.||+.|+..
T Consensus 176 ~~~v~~~~~~~~vd~vI~GH~Hr~ai~--------~i~~~~yi~lGdW~ 216 (237)
T COG2908 176 PAAVADEARRHGVDGVIHGHTHRPAIH--------NIPGITYINLGDWV 216 (237)
T ss_pred HHHHHHHHHHcCCCEEEecCcccHhhc--------cCCCceEEecCcch
Confidence 456667888999999999999976554 34569999999987
No 71
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.97 E-value=0.00015 Score=79.71 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=101.7
Q ss_pred CCeEEEEEecCCCCCCh------HHHHHHHH---------hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCcc
Q 008663 207 YPSRIAIVGDVGLTYNT------TSTVSHMI---------SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHE 271 (558)
Q Consensus 207 ~~~rfavigD~g~~~~~------~~~l~~l~---------~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e 271 (558)
.+.++++++|+|.+... ...++.+. ..+++.++++||++...+... +... +....+
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p-~~~~--------~~~~~~ 312 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYP-GQEE--------ELEIVD 312 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCc-cchh--------hccchh
Confidence 36899999999977532 12334444 457899999999995321100 0000 000011
Q ss_pred chhHHHHHHHHhhhhhhccCCceeecCCCccccCccc--hhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcc
Q 008663 272 TYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAEN--RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV 349 (558)
Q Consensus 272 ~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~ 349 (558)
.+ .+.+.+.++++.+...+|+++++||||....... .....|...+..+. .....+ -+.+++++.+|++.-...
T Consensus 313 ~~-~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~--v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 313 IY-EQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHN--VTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred hH-HHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCC--eEEecC-CeEEEECCEEEEEECCCC
Confidence 11 1234455667777778999999999998532110 01122222221110 001112 234777888877765321
Q ss_pred -----cCC---CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccC
Q 008663 350 -----SFD---KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 350 -----~~~---~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+- ....-.+.|++.|+.. .-+| ..-.+.|.|....... ++++ -.|+++.||.|.
T Consensus 389 idDl~~~i~~~s~~~p~~~m~~~l~~r--HlaP--t~p~~~~~~p~~~D~l------------vi~~-~Pdv~~~GH~H~ 451 (504)
T PRK04036 389 IDDVISLIPGASYEKPGKAMEELLKRR--HLAP--IYGGRTPIAPEKEDYL------------VIDE-VPDIFHTGHVHI 451 (504)
T ss_pred HHHHHhhcccccccCHHHHHHHHHHhc--ccCC--CCCCCEEeCcCCCCCE------------EEec-CCCEEEeCCCCc
Confidence 110 1122244555555431 1010 0001223332111100 1112 358999999999
Q ss_pred ceeeeeccCCccCCCCcEEEEeCCCcc
Q 008663 422 YERSNRVYNYTLDPCGPVHITVGDGGN 448 (558)
Q Consensus 422 yeR~~~v~~~~~~~~g~vyiv~G~gG~ 448 (558)
+.... -.|+.+|.+|+--.
T Consensus 452 ~~~~~--------~~g~~~IN~gsf~~ 470 (504)
T PRK04036 452 NGYGK--------YRGVLLINSGTWQA 470 (504)
T ss_pred cceEE--------ECCEEEEECCcccc
Confidence 86652 34788888777543
No 72
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.92 E-value=7e-05 Score=78.49 Aligned_cols=114 Identities=17% Similarity=0.298 Sum_probs=70.2
Q ss_pred CeEEEEEecCCCCCChH------------------HHHHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCC
Q 008663 208 PSRIAIVGDVGLTYNTT------------------STVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSP 268 (558)
Q Consensus 208 ~~rfavigD~g~~~~~~------------------~~l~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~ 268 (558)
++|++.++|.|.-.+.. +.+.... ..+||.++++||+..+ |...+
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDe------G~~~~---------- 111 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDE------GQWAG---------- 111 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEecccccc------CccCC----------
Confidence 78999999998754211 1111111 3599999999999963 33211
Q ss_pred CccchhHHHHHHHHhhhhhh---ccCCceeecCCCccccCccc--hhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEE
Q 008663 269 IHETYQPRWDYWGRYMQPVL---SKVPIMVVEGNHEYEEQAEN--RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFL 343 (558)
Q Consensus 269 ~~e~Y~~~wd~~~~~l~~l~---~~~P~~~v~GNHD~~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI 343 (558)
+.+|.+..+-++.+. .++|.+.++||||++..... .....|.+.| ++....|+.|+..|+
T Consensus 112 -----~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~f----------g~~~r~f~v~~~tf~ 176 (410)
T KOG3662|consen 112 -----DEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVF----------GPTERRFDVGNLTFV 176 (410)
T ss_pred -----hHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHHHHhh----------cchhhhhccCCceeE
Confidence 133433222233332 57999999999999744221 1123344433 224566999999999
Q ss_pred EEcCcccCC
Q 008663 344 MLAAYVSFD 352 (558)
Q Consensus 344 ~LDt~~~~~ 352 (558)
++|++....
T Consensus 177 ~~d~~~ls~ 185 (410)
T KOG3662|consen 177 MFDSNALSG 185 (410)
T ss_pred EeeehhhcC
Confidence 999875433
No 73
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.90 E-value=1.4e-05 Score=77.56 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.8
Q ss_pred EEEEEecCCCCCChH-HHHHHHHh-CCCCEEEEcCCccc
Q 008663 210 RIAIVGDVGLTYNTT-STVSHMIS-NRPDLILLVGDVTY 246 (558)
Q Consensus 210 rfavigD~g~~~~~~-~~l~~l~~-~~pDfvl~~GDl~Y 246 (558)
||+++||+|.....- +.++.+.. .++|.++++||+++
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~ 40 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLID 40 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCccc
Confidence 789999999653221 22222221 35899999999995
No 74
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.86 E-value=0.0004 Score=70.93 Aligned_cols=188 Identities=20% Similarity=0.176 Sum_probs=88.7
Q ss_pred eEEEEEecCCCCCC-----------hHHHHHHHHhC----CC-CEEEEcCCcccccccccCCCCCccccccCCCCCCccc
Q 008663 209 SRIAIVGDVGLTYN-----------TTSTVSHMISN----RP-DLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHET 272 (558)
Q Consensus 209 ~rfavigD~g~~~~-----------~~~~l~~l~~~----~p-Dfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~ 272 (558)
++|++.+|+|.... ....++++.+. ++ -+++..||++..... ...
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~-------------------~~~ 61 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE-------------------SDL 61 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh-------------------HHh
Confidence 47888999987521 12334444432 33 488999999842210 000
Q ss_pred hhHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCC--C----CCC-CCCceEEEEEeCeEEE--E
Q 008663 273 YQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS--K----ESG-SLSKFYYSFNAGGIHF--L 343 (558)
Q Consensus 273 Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~--~----~~~-~~~~~yYsf~~G~v~f--I 343 (558)
+ +.....+.|+.+ ..- .+++||||+... ...+........+|- . ..+ .....|.-++.+++++ |
T Consensus 62 ~--~g~~~~~~~n~~--g~D-a~~~GNHEfD~G--~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgvi 134 (285)
T cd07405 62 Q--DAEPDFRGMNLV--GYD-AMAVGNHEFDNP--LEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVI 134 (285)
T ss_pred c--CcchHHHHHHhh--CCc-EEeecccccccC--HHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEE
Confidence 0 011112344443 232 456799999743 222333332222221 0 001 1123466677887654 5
Q ss_pred EEcCccc-C--C----Cc---HHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcE
Q 008663 344 MLAAYVS-F--D----KS---GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDV 413 (558)
Q Consensus 344 ~LDt~~~-~--~----~~---~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~Vdl 413 (558)
.+-+... . . .+ ....+=+++.+++.+..+..-+|++.|-............ .....+.+.+...++|+
T Consensus 135 G~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~--~~~~~lA~~~~~~giD~ 212 (285)
T cd07405 135 GLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGSNA--PGDVEMARALPAGGLDL 212 (285)
T ss_pred EecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccccccC--chHHHHHHhcCCCCCCE
Confidence 5543211 0 0 00 1122223333333332356779999999875432110000 00112222222358999
Q ss_pred EEECcccCcee
Q 008663 414 VFNGHVHAYER 424 (558)
Q Consensus 414 vlsGH~H~yeR 424 (558)
+|.||.|....
T Consensus 213 IigGHsH~~~~ 223 (285)
T cd07405 213 IVGGHSQDPVC 223 (285)
T ss_pred EEeCCCCcccc
Confidence 99999998643
No 75
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=5.2e-05 Score=76.08 Aligned_cols=73 Identities=22% Similarity=0.394 Sum_probs=47.6
Q ss_pred eEEEEEecCCCCCCh---------H----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008663 209 SRIAIVGDVGLTYNT---------T----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (558)
Q Consensus 209 ~rfavigD~g~~~~~---------~----~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (558)
+||++++|+|.+... . ..++.+.+.++|+||++||++... . + .. .
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~------~------------p--~~--~ 58 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTA------N------------P--PA--E 58 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCC------C------------C--CH--H
Confidence 589999999986431 1 233344567899999999999531 1 0 01 1
Q ss_pred HHHHHHHhhhhhh-cc-CCceeecCCCccc
Q 008663 276 RWDYWGRYMQPVL-SK-VPIMVVEGNHEYE 303 (558)
Q Consensus 276 ~wd~~~~~l~~l~-~~-~P~~~v~GNHD~~ 303 (558)
....+.++++.+. .. +|+++++||||..
T Consensus 59 ~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 59 AQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 2223445555554 23 8999999999985
No 76
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.78 E-value=0.00015 Score=68.07 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.1
Q ss_pred cCCcEEEECcccCceee
Q 008663 409 YGVDVVFNGHVHAYERS 425 (558)
Q Consensus 409 ~~VdlvlsGH~H~yeR~ 425 (558)
.+.+++++||+|.....
T Consensus 124 ~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 124 DRGSWNLHGHIHSNSPD 140 (168)
T ss_pred CCCeEEEEeeeCCCCCC
Confidence 46789999999987665
No 77
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.77 E-value=0.00028 Score=70.25 Aligned_cols=198 Identities=19% Similarity=0.200 Sum_probs=95.1
Q ss_pred EEEecCCCCCCh--HH----HHHHHHhC-----CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHH
Q 008663 212 AIVGDVGLTYNT--TS----TVSHMISN-----RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYW 280 (558)
Q Consensus 212 avigD~g~~~~~--~~----~l~~l~~~-----~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~ 280 (558)
++++|+|..... .. .++.+... ++|.++++||++...... .+.. .. ...+.....+..+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~-~~~~-~~--------~~~~~~~~~~~~~ 71 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVY-PGQE-EE--------LEILDIYEQYEEA 71 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccC-Ccch-hh--------hhhhhHHHHHHHH
Confidence 689999976432 11 22333332 469999999999531000 0000 00 0000111234556
Q ss_pred HHhhhhhhccCCceeecCCCccccCcc--chhhHhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCc--cc---C--
Q 008663 281 GRYMQPVLSKVPIMVVEGNHEYEEQAE--NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAY--VS---F-- 351 (558)
Q Consensus 281 ~~~l~~l~~~~P~~~v~GNHD~~~~~~--~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~--~~---~-- 351 (558)
.++++.+...+|+++++||||.....- ......+...+..+.- ....+. +.+.+++.+|++.-.. .+ +
T Consensus 72 ~~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v--~~l~Np-~~~~~~g~~i~~~~G~~~~d~~~~~~ 148 (243)
T cd07386 72 AEYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNV--EFVSNP-ALVKIHGVDVLIYHGRSIDDVVKLIP 148 (243)
T ss_pred HHHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcCCCce--EEeCCC-CEEEECCEEEEEECCCCHHHHHHhCC
Confidence 667777777899999999999853210 0111223222210100 011122 2477788887764211 00 0
Q ss_pred -CCcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccC
Q 008663 352 -DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYN 430 (558)
Q Consensus 352 -~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~ 430 (558)
.....-.++++..|.... -.|. .-.-.|.+... .++ +..+...+++|+||.|.+....
T Consensus 149 ~~~~~~~~~~~~~~l~~~h--l~P~--~~~~~~~~~~~-~~~------------~~~~~~p~vii~Gh~h~~~~~~---- 207 (243)
T cd07386 149 GLSYDKPGKAMEELLKRRH--LAPI--YGGRTPIAPEP-EDY------------LVIDEVPDILHTGHVHVYGVGV---- 207 (243)
T ss_pred CCCcccHHHHHHHHHhhcc--cCCC--CCCCEeeCCCC-CCC------------EEecCCCCEEEECCCCchHhEE----
Confidence 112233455665555421 1110 00001111110 000 1112357899999999976653
Q ss_pred CccCCCCcEEEEeCCCc
Q 008663 431 YTLDPCGPVHITVGDGG 447 (558)
Q Consensus 431 ~~~~~~g~vyiv~G~gG 447 (558)
-+|+.+|..|+--
T Consensus 208 ----~~~~~~vn~Gsf~ 220 (243)
T cd07386 208 ----YRGVLLVNSGTWQ 220 (243)
T ss_pred ----ECCEEEEECCCCc
Confidence 2478888777743
No 78
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00078 Score=74.68 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=100.9
Q ss_pred CCeEEEEEecCCCCCC------------hH----HHHHHHHhC-CCCEEEEcCCcccccccccCCCCCccccccCCCCCC
Q 008663 207 YPSRIAIVGDVGLTYN------------TT----STVSHMISN-RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPI 269 (558)
Q Consensus 207 ~~~rfavigD~g~~~~------------~~----~~l~~l~~~-~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~ 269 (558)
..++|++.+|+|.... .. ..++++.+. +..++|..||++..+...+.
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~---------------- 88 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY---------------- 88 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc----------------
Confidence 4799999999997533 11 123444433 34689999999964321110
Q ss_pred ccchhHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCC------C---CCCCCceEEEEEeCeE
Q 008663 270 HETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK------E---SGSLSKFYYSFNAGGI 340 (558)
Q Consensus 270 ~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~------~---~~~~~~~yYsf~~G~v 340 (558)
........+.|..+ -.=..+.||||+... .+.+..+.+...+|-- . .......|.-++.+++
T Consensus 89 ----~~~g~~~~~~mN~m---~yDa~tiGNHEFd~g--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~ 159 (517)
T COG0737 89 ----LTKGEPTVDLLNAL---GYDAMTLGNHEFDYG--LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGV 159 (517)
T ss_pred ----ccCCChHHHHHhhc---CCcEEeecccccccC--HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCe
Confidence 01111222344443 223678999999732 2334455555445510 1 1122346788888874
Q ss_pred --EEEEEcCcc--cC---C-----CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH
Q 008663 341 --HFLMLAAYV--SF---D-----KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK 408 (558)
Q Consensus 341 --~fI~LDt~~--~~---~-----~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~ 408 (558)
-+|.+.+.. .+ . .-....+++++.+.+.+++...-+|+++|-+........... ........
T Consensus 160 KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~-~~~~~~~~----- 233 (517)
T COG0737 160 KIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEV-PGDVDVAV----- 233 (517)
T ss_pred EEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccc-cccccccc-----
Confidence 456665411 01 1 123456677777776655446779999999987542211110 00000000
Q ss_pred cCCcEEEECcccCc
Q 008663 409 YGVDVVFNGHVHAY 422 (558)
Q Consensus 409 ~~VdlvlsGH~H~y 422 (558)
.++|+++.||.|.+
T Consensus 234 ~~iD~i~~GH~H~~ 247 (517)
T COG0737 234 PGIDLIIGGHSHTV 247 (517)
T ss_pred cCcceEeccCCccc
Confidence 44999999999954
No 79
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.70 E-value=7.6e-05 Score=72.62 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCcEEEECcccCcee
Q 008663 401 AMEDLLYKYGVDVVFNGHVHAYER 424 (558)
Q Consensus 401 ~l~~ll~~~~VdlvlsGH~H~yeR 424 (558)
.+..+|..++.++++.||+|....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 577888999999999999997543
No 80
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.65 E-value=0.00013 Score=78.06 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=46.3
Q ss_pred eEEEEEecCCCCCCh-------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008663 209 SRIAIVGDVGLTYNT-------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (558)
Q Consensus 209 ~rfavigD~g~~~~~-------------~~~l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (558)
+||++++|+|.+... ...++.+.+.+||+||++||++.. +. + ..+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~------~~------------p--~~~-- 58 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDT------GS------------P--PSY-- 58 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccC------CC------------C--cHH--
Confidence 589999999986321 122334456799999999999842 11 0 001
Q ss_pred HHHHHHHhhhhhh-ccCCceeecCCCccc
Q 008663 276 RWDYWGRYMQPVL-SKVPIMVVEGNHEYE 303 (558)
Q Consensus 276 ~wd~~~~~l~~l~-~~~P~~~v~GNHD~~ 303 (558)
....+.+++..+. .++|+++++||||..
T Consensus 59 a~~~~~~~l~~L~~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 59 ARELYNRFVVNLQQTGCQLVVLAGNHDSV 87 (407)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCCh
Confidence 1122333444443 368999999999985
No 81
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.64 E-value=0.00013 Score=76.35 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=45.9
Q ss_pred eEEEEEecCCCCCCh---------HHH----HHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008663 209 SRIAIVGDVGLTYNT---------TST----VSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (558)
Q Consensus 209 ~rfavigD~g~~~~~---------~~~----l~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (558)
+||++++|+|.+... ... ++.+.+.++|+||++||+..... .. . ..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~----~~-------------~----~~ 59 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRK----AI-------------T----QN 59 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCC----CC-------------C----HH
Confidence 589999999986432 123 33445679999999999984310 00 0 01
Q ss_pred HHHHHHH-hhhhhh-ccCCceeecCCCccc
Q 008663 276 RWDYWGR-YMQPVL-SKVPIMVVEGNHEYE 303 (558)
Q Consensus 276 ~wd~~~~-~l~~l~-~~~P~~~v~GNHD~~ 303 (558)
......+ +++.+. ..+|+++++||||..
T Consensus 60 ~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 60 TMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 1112222 233332 479999999999975
No 82
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.63 E-value=0.0012 Score=73.73 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=59.0
Q ss_pred ceeecCCCccccCccchhhHhhhhccCCCCCC------CC----CCCceEEEEEeCe--EEEEEEcCccc-C---CCc--
Q 008663 293 IMVVEGNHEYEEQAENRTFVAYTSRFAFPSKE------SG----SLSKFYYSFNAGG--IHFLMLAAYVS-F---DKS-- 354 (558)
Q Consensus 293 ~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~------~~----~~~~~yYsf~~G~--v~fI~LDt~~~-~---~~~-- 354 (558)
=++++||||+... ...+..+.+...+|--. .. ..-..|.-++.++ +-||.|.+... . ...
T Consensus 84 Da~~lGNHEFd~G--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~ 161 (550)
T TIGR01530 84 DFFTLGNHEFDAG--NEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKD 161 (550)
T ss_pred CEEEeccccccCC--HHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCc
Confidence 4678999999632 23344443333333210 00 1123566678887 55677754211 0 110
Q ss_pred ---HHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc-CCcEEEECcccCce
Q 008663 355 ---GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAYE 423 (558)
Q Consensus 355 ---~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~ye 423 (558)
....+=+++..++.++.+..-+|++.|..... . ..+.++. +||++|.||.|.+-
T Consensus 162 ~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~~--------d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 162 IKFIDEIAAAQIAANALKQQGINKIILLSHAGFEK--------N-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred eEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcHH--------H-------HHHHhcCCCCCEEEeCCCCccc
Confidence 01112233333332224567799999976321 0 1233333 79999999999863
No 83
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.60 E-value=0.0012 Score=73.88 Aligned_cols=186 Identities=18% Similarity=0.172 Sum_probs=91.1
Q ss_pred CCeEEEEEecCCCCCC--------hH---HHHHHHHhC----CC-CEEEEcCCcccccccccCCCCCccccccCCCCCCc
Q 008663 207 YPSRIAIVGDVGLTYN--------TT---STVSHMISN----RP-DLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (558)
Q Consensus 207 ~~~rfavigD~g~~~~--------~~---~~l~~l~~~----~p-Dfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (558)
..++|++++|+|.... .. ..++++.+. .+ -++|..||++..... .
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-------------------s 93 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-------------------S 93 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-------------------h
Confidence 4799999999997532 11 223333321 34 478999999853211 0
Q ss_pred cchhHHHHHHHHhhhhhhccCCceeecCCCccccCccchhhHhhhhccCCCCC-------CCC-CCCceEEEEEeCeEE-
Q 008663 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------ESG-SLSKFYYSFNAGGIH- 341 (558)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~~~-~~~~~yYsf~~G~v~- 341 (558)
..++ .....+.|+.+ .. =++++||||+... ...+..+.....+|-- ..+ ..-..|.-++.++++
T Consensus 94 ~~~~--g~~~i~~mN~~--g~-Da~tlGNHEFD~G--~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kI 166 (551)
T PRK09558 94 DLQD--AEPDFRGMNLI--GY-DAMAVGNHEFDNP--LSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKI 166 (551)
T ss_pred hhcC--CchhHHHHhcC--CC-CEEcccccccCcC--HHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEE
Confidence 0010 11122344443 22 2566799999743 2233333333333321 001 112346667888855
Q ss_pred -EEEEcCcccC---CC-------cHHHHHHHHHHHhhccc-CCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc
Q 008663 342 -FLMLAAYVSF---DK-------SGDQYKWLEEDLANVER-EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY 409 (558)
Q Consensus 342 -fI~LDt~~~~---~~-------~~~Q~~WL~~~L~~~~~-~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~ 409 (558)
||.+-+.... .. -....+-+++.+++.++ .+..-+|++.|.......... ..... -.++.++.
T Consensus 167 giiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~-~~~~~----d~~la~~~ 241 (551)
T PRK09558 167 AVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG-SNAPG----DVEMARSL 241 (551)
T ss_pred EEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC-CCCcc----HHHHHHhC
Confidence 4555332110 00 01112223333333332 357789999998875432110 00000 02344443
Q ss_pred ---CCcEEEECcccCce
Q 008663 410 ---GVDVVFNGHVHAYE 423 (558)
Q Consensus 410 ---~VdlvlsGH~H~ye 423 (558)
+||++|.||.|..-
T Consensus 242 ~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 242 PAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CccCceEEEeCCCCccc
Confidence 79999999999753
No 84
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.54 E-value=0.0016 Score=59.04 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=25.2
Q ss_pred EEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccC
Q 008663 376 LVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 376 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.|+++|.|.-..... + +..+ ....+.++++.+.||.|+
T Consensus 110 ~~~LsHyP~~~~~~~--~----~~~r--~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 110 DVYLSHYPRPGQDHP--G----MESR--FDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred EEEEEeCCCCCCCCc--c----hhhh--HHHHhccCCeEEeccccc
Confidence 799999997653321 1 1122 233455799999999999
No 85
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.48 E-value=0.00011 Score=71.93 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHhC-CCCEEEEcCCccc
Q 008663 210 RIAIVGDVGLTYNT-TSTVSHMISN-RPDLILLVGDVTY 246 (558)
Q Consensus 210 rfavigD~g~~~~~-~~~l~~l~~~-~pDfvl~~GDl~Y 246 (558)
|++++||+|..... .+.++.+... +.|-++++||++.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvD 56 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLID 56 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccC
Confidence 89999999976432 2344444322 5789999999995
No 86
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.41 E-value=0.0017 Score=67.15 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc-CCcEEEECcccCce
Q 008663 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAYE 423 (558)
Q Consensus 371 ~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~ye 423 (558)
.+..-+|+++|.--+. .. ..|.++. +||++|.||.|.+-
T Consensus 206 ~gvD~II~LsH~g~~~-------~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4566799999984111 11 1344454 79999999999763
No 87
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.38 E-value=0.0019 Score=65.75 Aligned_cols=182 Identities=22% Similarity=0.307 Sum_probs=101.7
Q ss_pred eEEEEEecCCCCCC-hHHHHHHHHhC---CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008663 209 SRIAIVGDVGLTYN-TTSTVSHMISN---RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (558)
Q Consensus 209 ~rfavigD~g~~~~-~~~~l~~l~~~---~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (558)
+||+|-||+|..-+ ..+++..+.+. +.|++|.+||+---. |+..-.|- .....|+ +...|.+..
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavR----n~~D~~si-------avPpKy~-~m~~F~~YY 68 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVR----NEQDLKSI-------AVPPKYR-RMGDFYKYY 68 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhc----chhhcccc-------cCCHHHH-HHHHHHHHh
Confidence 48999999997532 34556666554 789999999985321 23211111 1223443 223333332
Q ss_pred -hhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCCCCCCceEE-----EEEeCeEEEEEEcCc---ccCCCc-
Q 008663 285 -QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYY-----SFNAGGIHFLMLAAY---VSFDKS- 354 (558)
Q Consensus 285 -~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----sf~~G~v~fI~LDt~---~~~~~~- 354 (558)
....+.+|.+++-||||.. .|... +|..+ -...+.|| ...+||+|+-.|..- .+|..+
T Consensus 69 sge~~APVlTIFIGGNHEAs---------nyL~e--LpyGG-wVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh 136 (456)
T KOG2863|consen 69 SGEIKAPVLTIFIGGNHEAS---------NYLQE--LPYGG-WVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGH 136 (456)
T ss_pred CCcccCceeEEEecCchHHH---------HHHHh--cccCc-eeccceEEeeecceEEECCEEEeeccchhhhhhcccCC
Confidence 3345778999999999984 33332 23211 12345666 367889999888752 222211
Q ss_pred ----------------HHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHH-H----------------HHH
Q 008663 355 ----------------GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAEC-M----------------RVA 401 (558)
Q Consensus 355 ----------------~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~-~----------------r~~ 401 (558)
-.+++ ...|++. +.|--|+++|.=+.... .+++... + ...
T Consensus 137 ~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~--~yGd~~~LLr~KPFFrqeie~~~LGSp~ 209 (456)
T KOG2863|consen 137 FEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIY--YYGDKKQLLRLKPFFRQEIEEGKLGSPA 209 (456)
T ss_pred CCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchh--hcCCHHHHHhcCcHHHHHHhcCCcCChH
Confidence 11111 1123332 23446778886332221 1121111 1 236
Q ss_pred HHHHHHHcCCcEEEECcccC
Q 008663 402 MEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 402 l~~ll~~~~VdlvlsGH~H~ 421 (558)
+++||++.+...+|+.|.|.
T Consensus 210 ~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 210 LEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred HHHHHHHhCcchhhhhhHhh
Confidence 77899999999999999995
No 88
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.18 E-value=0.0013 Score=60.42 Aligned_cols=50 Identities=18% Similarity=0.026 Sum_probs=31.0
Q ss_pred EEEEeCCcccccCC-Cccc----chHHHHHHHHHHHHHcCCcEEEECccc-Cceee
Q 008663 376 LVATWHAPWYSTYK-AHYR----EAECMRVAMEDLLYKYGVDVVFNGHVH-AYERS 425 (558)
Q Consensus 376 vIv~~H~P~y~s~~-~~~~----~~~~~r~~l~~ll~~~~VdlvlsGH~H-~yeR~ 425 (558)
-|+++|.|++.... .... ....-...+.+++++.+....|+||.| .|||-
T Consensus 71 DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~ 126 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE 126 (150)
T ss_pred CEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec
Confidence 47777887765421 0000 001112456678888899999999999 56664
No 89
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.11 E-value=0.012 Score=68.01 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCc
Q 008663 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAY 422 (558)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~y 422 (558)
+.+++...+.++.++.-+|++.|.-+.........+. .-..|..--+||++|.||.|..
T Consensus 296 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En-----~~~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 296 EAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEEN-----VGYQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccc-----hhhHHhcCCCCCEEEECCCCCc
Confidence 3344444444434677899999988654211111111 1112332348999999999985
No 90
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.11 E-value=0.00087 Score=63.08 Aligned_cols=51 Identities=16% Similarity=0.421 Sum_probs=32.3
Q ss_pred HhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCceeecCCCccc
Q 008663 231 ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 231 ~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
.+.+||.++++||+++... +. . ...+.... .+......+|+++++||||..
T Consensus 38 ~~~~~d~lii~GDl~~~~~----~~----------------~-~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 38 EEYGPERLIILGDLKHSFG----GL----------------S-RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HhcCCCEEEEeCccccccc----cc----------------C-HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 4568999999999996321 10 0 11222221 233334678999999999985
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.01 E-value=0.012 Score=71.40 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=35.2
Q ss_pred HHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc-CCcEEEECcccCcee
Q 008663 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAYER 424 (558)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR 424 (558)
+++.+.+.++.++.-+|++.|...-........ .....+|.++. +||++|.||.|....
T Consensus 223 ~~~~v~~lk~~gaDvII~l~H~G~~~~~~~~~~-----en~~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 223 ANKTIPEMKKGGADVIVALAHSGIESEYQSSGA-----EDSVYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCcCCCCCCCCc-----chHHHHHHHhCCCCcEEEeCCCccccc
Confidence 333333333346778999999987543211111 12233455443 799999999998643
No 92
>PHA02239 putative protein phosphatase
Probab=96.82 E-value=0.0023 Score=63.37 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=41.8
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhh
Q 008663 209 SRIAIVGDVGLTYNT-TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (558)
Q Consensus 209 ~rfavigD~g~~~~~-~~~l~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (558)
+|++++||+|..... .+.++.+... ..|.++++||+++. |.. . . +.+..+++
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDr------G~~------------s----~---~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDR------GKR------------S----K---DVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCC------CCC------------h----H---HHHHHHHH
Confidence 378999999965322 2344444332 25999999999952 321 0 1 11222223
Q ss_pred hhhccCCceeecCCCccc
Q 008663 286 PVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 286 ~l~~~~P~~~v~GNHD~~ 303 (558)
.+....++++++||||..
T Consensus 56 ~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 56 LMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred HhhcCCCeEEEECCcHHH
Confidence 222345789999999974
No 93
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.77 E-value=0.051 Score=62.76 Aligned_cols=48 Identities=29% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc-CCcEEEECcccCcee
Q 008663 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAYER 424 (558)
Q Consensus 371 ~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR 424 (558)
.++.-+|++.|..+-.... ... +..+.. .+.+. +||++|.||.|..-.
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~~--~ena~~-~l~~v~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NVG--MENASY-YLTEVPGVDAVLMGHSHTEVK 291 (780)
T ss_pred cCCCEEEEEeccCcccccc---ccc--chhhhH-HHhcCCCCCEEEECCCCCccc
Confidence 4577799999988654211 110 111111 13443 799999999997643
No 94
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.60 E-value=0.0051 Score=60.58 Aligned_cols=70 Identities=13% Similarity=0.358 Sum_probs=45.7
Q ss_pred eEEEEEecCCCCCCh--------------HHHHHHHH----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCc
Q 008663 209 SRIAIVGDVGLTYNT--------------TSTVSHMI----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (558)
Q Consensus 209 ~rfavigD~g~~~~~--------------~~~l~~l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (558)
-+.++++|+|..... .++++++. +.+||.+|++||+.+... .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~-----~--------------- 74 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFK-----K--------------- 74 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccC-----C---------------
Confidence 467899999987421 13444443 457999999999996321 0
Q ss_pred cchhHHHHHHHHhhhhhhccCCceeecCCCccc
Q 008663 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
...|..+.++++.+ ..+++.++||||..
T Consensus 75 ---~~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 75 ---GLEWRFIREFIEVT--FRDLILIRGNHDAL 102 (225)
T ss_pred ---hHHHHHHHHHHHhc--CCcEEEECCCCCCc
Confidence 01233444455544 45899999999964
No 95
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.055 Score=57.87 Aligned_cols=89 Identities=16% Similarity=0.315 Sum_probs=54.8
Q ss_pred CCeEEEEEecCCCCCCh------HHHHHHHHh-----CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008663 207 YPSRIAIVGDVGLTYNT------TSTVSHMIS-----NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (558)
Q Consensus 207 ~~~rfavigD~g~~~~~------~~~l~~l~~-----~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (558)
..+++++++|.|.+... ...++.+.- .+...++.+||.+..-+.+. |+ -.+..+.+-| .
T Consensus 224 e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYp-gq--------~~eL~i~di~-~ 293 (481)
T COG1311 224 ERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYP-GQ--------EEELVIADIY-E 293 (481)
T ss_pred cceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEeccccccccccc-Cc--------ccccccccch-H
Confidence 46889999999976421 123333331 24478999999995322111 11 1111122222 2
Q ss_pred HHHHHHHhhhhhhccCCceeecCCCccccC
Q 008663 276 RWDYWGRYMQPVLSKVPIMVVEGNHEYEEQ 305 (558)
Q Consensus 276 ~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~ 305 (558)
+++.+.+++..+-..+-+++.|||||....
T Consensus 294 qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~ 323 (481)
T COG1311 294 QYEELAEFLDQVPEHIKVFIMPGNHDAVRQ 323 (481)
T ss_pred HHHHHHHHHhhCCCCceEEEecCCCCcccc
Confidence 456677778877788899999999998644
No 96
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.51 E-value=0.044 Score=54.18 Aligned_cols=186 Identities=20% Similarity=0.288 Sum_probs=89.1
Q ss_pred EEecCCCCCChH---HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008663 213 IVGDVGLTYNTT---STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (558)
Q Consensus 213 vigD~g~~~~~~---~~l~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (558)
++||.=....-. ..+.++.+ .++||||..|.++- .|.+.. . ..+.++++
T Consensus 2 fiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa------~G~Git---------------~---~~~~~L~~--- 54 (253)
T PF13277_consen 2 FIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAA------GGFGIT---------------P---KIAEELFK--- 54 (253)
T ss_dssp EE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTT------TTSS-----------------H---HHHHHHHH---
T ss_pred eEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccC------CCCCCC---------------H---HHHHHHHh---
Confidence 567763332211 22334443 48999999999984 344210 1 11122221
Q ss_pred ccCCceeecCCCccccCccchhhHhhhh---ccCCCCCCC-CCCCceEEEEEeCeEEEEEEcC--cccCCCcHHHHHHHH
Q 008663 289 SKVPIMVVEGNHEYEEQAENRTFVAYTS---RFAFPSKES-GSLSKFYYSFNAGGIHFLMLAA--YVSFDKSGDQYKWLE 362 (558)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~---~f~~P~~~~-~~~~~~yYsf~~G~v~fI~LDt--~~~~~~~~~Q~~WL~ 362 (558)
..+- ..+.|||=|... ....|.. +.--|.|-+ +..+.-|..++.++.++-++|- +........=...++
T Consensus 55 ~GvD-viT~GNH~wdkk----ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d 129 (253)
T PF13277_consen 55 AGVD-VITMGNHIWDKK----EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAAD 129 (253)
T ss_dssp HT-S-EEE--TTTTSST----THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHH
T ss_pred cCCC-EEecCcccccCc----HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHH
Confidence 1332 567899998632 2222322 222333322 3456788899999877766664 222222223344455
Q ss_pred HHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCc---eeeeeccCCccCCCCcE
Q 008663 363 EDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAY---ERSNRVYNYTLDPCGPV 439 (558)
Q Consensus 363 ~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~y---eR~~~v~~~~~~~~g~v 439 (558)
+.|++. +.+++.+||=+|.=--+ ...+ .-.+.+-+|.+|+.=|+|.. +|. =|+|+.
T Consensus 130 ~~l~~l-~~~~~~iiVDFHAEaTS-----------EK~A-~g~~lDGrvsaV~GTHTHVqTaDerI--------Lp~GTa 188 (253)
T PF13277_consen 130 RLLEEL-KEETDIIIVDFHAEATS-----------EKQA-MGWYLDGRVSAVVGTHTHVQTADERI--------LPGGTA 188 (253)
T ss_dssp HHHHH------SEEEEEEE-S-HH-----------HHHH-HHHHHBTTBSEEEEESSSS-BS--EE---------TTS-E
T ss_pred HHHHhc-cccCCEEEEEeecCcHH-----------HHHH-HHHHhCCcEEEEEeCCCCccCchhhc--------cCCCCE
Confidence 555554 24567889888863211 1222 23455668999999999954 444 378999
Q ss_pred EEE-eCCCcccCC
Q 008663 440 HIT-VGDGGNREK 451 (558)
Q Consensus 440 yiv-~G~gG~~~~ 451 (558)
||+ .|+-|...+
T Consensus 189 YiTDvGMtG~~ds 201 (253)
T PF13277_consen 189 YITDVGMTGPYDS 201 (253)
T ss_dssp EES---EBEESSS
T ss_pred EEecCccccCccc
Confidence 998 577777544
No 97
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.41 E-value=0.076 Score=60.42 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHH-cCCcEEEECcccCc
Q 008663 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAY 422 (558)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~y 422 (558)
+++...+.+..++.-+|++.|..+.........+ ..... +.+ -+||++|.||.|..
T Consensus 207 a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~ae-----n~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 207 ARKYVPEMKEKGADIVVAIPHSGISADPYKAMAE-----NSVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCCcccccc-----chhHH-HhcCCCCCEEEeCCCCcc
Confidence 4444444333457789999999874321100001 11112 233 37999999999975
No 98
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.37 E-value=0.086 Score=59.80 Aligned_cols=46 Identities=30% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc-CCcEEEECcccCc
Q 008663 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAY 422 (558)
Q Consensus 371 ~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~y 422 (558)
.++.-+|++.|.......... ..+. .. ..+.+. +||++|.||.|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en---~~-~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAEN---SA-YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccch---HH-HHHhcCCCCCEEEcCCCCcc
Confidence 456779999999875431110 0111 11 123443 8999999999975
No 99
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.36 E-value=0.0052 Score=62.33 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEEEEecCCCCCChH-HHHHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhh
Q 008663 210 RIAIVGDVGLTYNTT-STVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (558)
Q Consensus 210 rfavigD~g~~~~~~-~~l~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (558)
+++++||+|.....- ..++.+. ..+.|.++++||++.. |.. + ....+++..+
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdr------Gp~------------------s--~~vl~~l~~l 55 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNR------GPD------------------S--LEVLRFVKSL 55 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCC------CcC------------------H--HHHHHHHHhc
Confidence 689999999764332 2334432 2367999999999952 321 0 1222333333
Q ss_pred hccCCceeecCCCccc
Q 008663 288 LSKVPIMVVEGNHEYE 303 (558)
Q Consensus 288 ~~~~P~~~v~GNHD~~ 303 (558)
..++.+|.||||..
T Consensus 56 --~~~~~~VlGNHD~~ 69 (275)
T PRK00166 56 --GDSAVTVLGNHDLH 69 (275)
T ss_pred --CCCeEEEecChhHH
Confidence 34688999999984
No 100
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.34 E-value=0.0046 Score=61.24 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=40.7
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHh--C--------CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHH
Q 008663 210 RIAIVGDVGLTYNT-TSTVSHMIS--N--------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWD 278 (558)
Q Consensus 210 rfavigD~g~~~~~-~~~l~~l~~--~--------~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd 278 (558)
||+++||+|..... ...++.+.- . +.|.++++||++.. |.. -.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr------G~~--------------------s~ 55 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR------GPD--------------------SP 55 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC------CCC--------------------HH
Confidence 79999999976432 233444311 1 25899999999952 321 01
Q ss_pred HHHHhhhhhhccCCceeecCCCccc
Q 008663 279 YWGRYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 279 ~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
...+++..+.....++.+.||||..
T Consensus 56 evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 56 EVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHHHHHhhCCcEEEEECCcHHH
Confidence 2223333332234578999999973
No 101
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.25 E-value=0.0097 Score=58.97 Aligned_cols=145 Identities=21% Similarity=0.340 Sum_probs=88.3
Q ss_pred hhhhhhccCCceeecCCCccccCccc-------hhhHhhhhccCC------CCCC--CCCCCceEEEEEeCeEEEEEEcC
Q 008663 283 YMQPVLSKVPIMVVEGNHEYEEQAEN-------RTFVAYTSRFAF------PSKE--SGSLSKFYYSFNAGGIHFLMLAA 347 (558)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~-------~~~~~y~~~f~~------P~~~--~~~~~~~yYsf~~G~v~fI~LDt 347 (558)
...++...+|+|+-.||||....... +..++|.+.+.- |... .-+....-||++.|++|.+-+-+
T Consensus 163 ~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hr 242 (392)
T COG5555 163 DVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHR 242 (392)
T ss_pred CCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEee
Confidence 34455567999999999999744221 122333322211 1111 11233456899999999988765
Q ss_pred cccCC-C-cHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCccc----------------chHHHHHHHHHHHHHc
Q 008663 348 YVSFD-K-SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYR----------------EAECMRVAMEDLLYKY 409 (558)
Q Consensus 348 ~~~~~-~-~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~----------------~~~~~r~~l~~ll~~~ 409 (558)
...-. . ...-+-||+.+|........+ ++++.|.-+-.-..+.+. .....|.++...++-|
T Consensus 243 f~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGY 321 (392)
T COG5555 243 FIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGY 321 (392)
T ss_pred eccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCc
Confidence 43211 1 123367999999876544444 788888765332111111 0123477888899999
Q ss_pred CCcEEEECcccCceeeeec
Q 008663 410 GVDVVFNGHVHAYERSNRV 428 (558)
Q Consensus 410 ~VdlvlsGH~H~yeR~~~v 428 (558)
+|.-.+.||.|...-.++.
T Consensus 322 Nvvg~fhGhkhd~~mayrr 340 (392)
T COG5555 322 NVVGTFHGHKHDFNMAYRR 340 (392)
T ss_pred eeEEeccccccccceeeee
Confidence 9999999999987555443
No 102
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=96.22 E-value=0.031 Score=60.09 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=32.5
Q ss_pred CCeEEEEEecCCCCCC---------hHHHHHHH----HhCCCCEEEEcCCcccccc
Q 008663 207 YPSRIAIVGDVGLTYN---------TTSTVSHM----ISNRPDLILLVGDVTYANL 249 (558)
Q Consensus 207 ~~~rfavigD~g~~~~---------~~~~l~~l----~~~~pDfvl~~GDl~Y~d~ 249 (558)
..+||++..|.|.++. ...++++| .+++.||||..||+..++.
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNk 67 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENK 67 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCC
Confidence 3699999999998864 22344444 3568999999999998753
No 103
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.16 E-value=0.052 Score=54.42 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=93.9
Q ss_pred EEEEecCCCCCChH--H----HHHHHHh-----------CCCCEEEEcCCcccccccccCCCCCccccc--cCCCCCCcc
Q 008663 211 IAIVGDVGLTYNTT--S----TVSHMIS-----------NRPDLILLVGDVTYANLYLTNGTGSDCYAC--SFANSPIHE 271 (558)
Q Consensus 211 favigD~g~~~~~~--~----~l~~l~~-----------~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~--~~~~~~~~e 271 (558)
+++++|++.+.+.. . .++.|.. .+...+|++||.+.... ...+.... .+.......
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~-----~~~~~~~~~~~~~~~~~~~ 76 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKST-----QGKDSQTKARYLTKKSSAA 76 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccc-----cccchhhhhhccccccchh
Confidence 68899998775532 1 2223321 13346999999996431 10000000 000000011
Q ss_pred chhHHHHHHHHhhhhhhccCCceeecCCCccccCccc-hhh-HhhhhccCCCCCCCCCCCceEEEEEeCeEEEEEEcCcc
Q 008663 272 TYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAEN-RTF-VAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV 349 (558)
Q Consensus 272 ~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~-~~~-~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~ 349 (558)
.+ ...+.+..++..+.+.+|+.+.|||||-....-. ..+ ..+..+-....+ -....+. |.|++++++|++.....
T Consensus 77 ~~-~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~-~~~vtNP-~~~~i~g~~vLgtsGqn 153 (257)
T cd07387 77 SV-EAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYST-LNLVTNP-YEFSIDGVRVLGTSGQN 153 (257)
T ss_pred hH-HHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCC-cEEeCCC-eEEEECCEEEEEECCCC
Confidence 12 2355666778888899999999999998743211 011 111100000000 0111222 45999999999987752
Q ss_pred -----cCCCcHHHHHHHHHHHhhcccCCCCEEEEEeCC-cccccCCCcc--cchHHHHHHHHHHHHHcCCcEEEECcccC
Q 008663 350 -----SFDKSGDQYKWLEEDLANVEREVTPWLVATWHA-PWYSTYKAHY--REAECMRVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 350 -----~~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~-P~y~s~~~~~--~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.|...+.-++.|++.|+-- |. |.+...-..+ .+. .+++-+.-.+++|+||.|.
T Consensus 154 i~Di~ky~~~~~~l~~me~~L~wr------------HlaPTaPDTL~~yP~~~~-------Dpfvi~~~PhVyf~Gnq~~ 214 (257)
T cd07387 154 VDDILKYSSLESRLDILERTLKWR------------HIAPTAPDTLWCYPFTDR-------DPFILEECPHVYFAGNQPK 214 (257)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhc------------ccCCCCCCccccccCCCC-------CceeecCCCCEEEeCCCcc
Confidence 1233344466777777641 21 1111100000 000 0222233488999999999
Q ss_pred ceee
Q 008663 422 YERS 425 (558)
Q Consensus 422 yeR~ 425 (558)
|+..
T Consensus 215 f~t~ 218 (257)
T cd07387 215 FGTK 218 (257)
T ss_pred eeee
Confidence 9775
No 104
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.11 E-value=0.012 Score=58.74 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=23.9
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHhC---------CCCEEEEcCCccc
Q 008663 210 RIAIVGDVGLTYNT-TSTVSHMISN---------RPDLILLVGDVTY 246 (558)
Q Consensus 210 rfavigD~g~~~~~-~~~l~~l~~~---------~pDfvl~~GDl~Y 246 (558)
|++++||+|..... .+.++++.-. .-|.++++||+++
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliD 48 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTD 48 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccC
Confidence 78999999976432 2233332111 2378999999995
No 105
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.06 E-value=0.098 Score=51.82 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=68.0
Q ss_pred HhhhhhhccCCceeecCCCccccCccchhhHhh---hhccCCCCCCCCCC---CceEEEEEeCe--EEEEEEcCcccCC-
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAY---TSRFAFPSKESGSL---SKFYYSFNAGG--IHFLMLAAYVSFD- 352 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y---~~~f~~P~~~~~~~---~~~yYsf~~G~--v~fI~LDt~~~~~- 352 (558)
+.|+.+ .+-++.+.+||++.... ..+..- .+.-.++....+.. ...+..++.++ +-|+.+.+.....
T Consensus 71 ~~L~~~--G~d~~tlaNNH~fD~G~--~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~ 146 (239)
T cd07381 71 DALKAA--GFDVVSLANNHTLDYGE--EGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIP 146 (239)
T ss_pred HHHHHh--CCCEEEcccccccccch--HHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCc
Confidence 344443 55555555699997432 222211 12223333222111 13455567777 4555554431110
Q ss_pred ---------CcHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCce
Q 008663 353 ---------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (558)
Q Consensus 353 ---------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (558)
....-.+-+++.+++.++. +..+|+..|-..-... ........+...+.+.++|+|+.||.|..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 147 LAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred CcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 0111124455666655433 7889999996542211 111122344445556799999999999876
Q ss_pred ee
Q 008663 424 RS 425 (558)
Q Consensus 424 R~ 425 (558)
-.
T Consensus 221 ~~ 222 (239)
T cd07381 221 GI 222 (239)
T ss_pred Ce
Confidence 54
No 106
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=95.85 E-value=0.011 Score=57.92 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCChH-HHHHHHH-hCCCCEEEEcCCccc
Q 008663 210 RIAIVGDVGLTYNTT-STVSHMI-SNRPDLILLVGDVTY 246 (558)
Q Consensus 210 rfavigD~g~~~~~~-~~l~~l~-~~~pDfvl~~GDl~Y 246 (558)
|++++||+|.....- ++++.+. ..+.|.++++||++.
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vd 54 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNID 54 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcC
Confidence 899999999764322 2333332 236799999999995
No 107
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=95.72 E-value=0.041 Score=44.21 Aligned_cols=76 Identities=26% Similarity=0.338 Sum_probs=45.6
Q ss_pred CCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEeccCCCCceEEEeEEEEeeeecccCCccccccCcE
Q 008663 85 EPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGII 164 (558)
Q Consensus 85 ~P~qi~lt~~~~p~s~~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~~~~g~~~~~~~~~ 164 (558)
.|+.+++.-.. ++++.|+|.... ..+.. ...=.|+|....+..... ... .++-.
T Consensus 2 ~P~~l~v~~~~-~~sv~v~W~~~~-~~~~~-------~~~y~v~~~~~~~~~~~~----~~~-------------~~~~~ 55 (85)
T PF00041_consen 2 APENLSVSNIS-PTSVTVSWKPPS-SGNGP-------ITGYRVEYRSVNSTSDWQ----EVT-------------VPGNE 55 (85)
T ss_dssp SSEEEEEEEEC-SSEEEEEEEESS-STSSS-------ESEEEEEEEETTSSSEEE----EEE-------------EETTS
T ss_pred cCcCeEEEECC-CCEEEEEEECCC-CCCCC-------eeEEEEEEEecccceeee----eee-------------eeeee
Confidence 47788777653 799999999864 11111 123346665554433110 000 01123
Q ss_pred EEEEeCCCCCCCEEEEEEecCC
Q 008663 165 HHVRLTGLKPDTLYHYQCGDPS 186 (558)
Q Consensus 165 h~v~l~gL~P~T~Y~Yrvg~~~ 186 (558)
+.+.|++|+|+|+|.++|..-+
T Consensus 56 ~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 56 TSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SEEEEESCCTTSEEEEEEEEEE
T ss_pred eeeeeccCCCCCEEEEEEEEEe
Confidence 3778999999999999997544
No 108
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.43 E-value=0.69 Score=45.45 Aligned_cols=193 Identities=21% Similarity=0.290 Sum_probs=102.8
Q ss_pred eEEEEEecCCCCCChHHHHH---HHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008663 209 SRIAIVGDVGLTYNTTSTVS---HMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (558)
Q Consensus 209 ~rfavigD~g~~~~~~~~l~---~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (558)
+|++++||.=........-+ .+.+ .++||||..|-++- .|.+. .|+.+..++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa------~G~Gi------------------t~k~y~~l~ 56 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAA------GGFGI------------------TEKIYKELL 56 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCcccc------CCcCC------------------CHHHHHHHH
Confidence 48999999865544333333 3333 47999999998873 34321 233333333
Q ss_pred hhhhccCCceeecCCCccccCccchhhHhhhhccCCCCCCC-CCCCceEEEEEeCeEEEEEEcC--cccCCC-cHHHHHH
Q 008663 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKES-GSLSKFYYSFNAGGIHFLMLAA--YVSFDK-SGDQYKW 360 (558)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~-~~~~~~yYsf~~G~v~fI~LDt--~~~~~~-~~~Q~~W 360 (558)
+. .+ =+++.|||=|.... ...|..-..++--|.+-+ +..+..|+-|+..+..+.+.+- ...... -..-.+=
T Consensus 57 ~~---G~-dviT~GNH~wd~~e-i~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~ 131 (266)
T COG1692 57 EA---GA-DVITLGNHTWDQKE-ILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKA 131 (266)
T ss_pred Hh---CC-CEEecccccccchH-HHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHH
Confidence 22 22 35789999886321 111111112222233322 2344556667776655544443 222111 1222334
Q ss_pred HHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEE
Q 008663 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVH 440 (558)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vy 440 (558)
+++.|.+.+ .+++-+||-+|.=--+. ..+| -++.+-+|.+|+.=|+|..---.++ =+.|+.|
T Consensus 132 ~d~l~~~~~-~~~~~iiVDFHAEtTSE-----------K~a~-g~yldGrvsavvGTHTHV~TaD~rI-----L~~GTay 193 (266)
T COG1692 132 ADKLLDEIK-LGTDLIIVDFHAETTSE-----------KNAF-GWYLDGRVSAVVGTHTHVPTADERI-----LPKGTAY 193 (266)
T ss_pred HHHHHHhCc-cCCceEEEEccccchhh-----------hhhh-heEEcCeEEEEEeccCcccccccee-----cCCCcEE
Confidence 566666543 34567999988743221 1111 1233457999999999965333222 3679999
Q ss_pred EE-eCCCcc
Q 008663 441 IT-VGDGGN 448 (558)
Q Consensus 441 iv-~G~gG~ 448 (558)
|+ .|+-|.
T Consensus 194 iTDvGMtG~ 202 (266)
T COG1692 194 ITDVGMTGP 202 (266)
T ss_pred EecCccccc
Confidence 98 466555
No 109
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.33 E-value=0.28 Score=48.59 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=36.2
Q ss_pred HHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceee
Q 008663 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (558)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (558)
+++++++.++ +..++|++.|--.-.... ..... ..+..-+.+.++|+|+.||.|..+..
T Consensus 162 i~~~i~~lr~-~~D~vIv~~H~G~e~~~~----p~~~~-~~~A~~l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 162 ILADIARARK-KADVVIVSLHWGVEYQYE----PTDEQ-RELAHALIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred HHHHHHHHhc-cCCEEEEEecCccccCCC----CCHHH-HHHHHHHHHcCCCEEEcCCCCcCCce
Confidence 4455555443 478899999976532211 11122 23444444578999999999987655
No 110
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=95.31 E-value=0.021 Score=57.30 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=39.4
Q ss_pred EEEecCCCCCCh-HHHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhc
Q 008663 212 AIVGDVGLTYNT-TSTVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLS 289 (558)
Q Consensus 212 avigD~g~~~~~-~~~l~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~ 289 (558)
.++||+|..... .+.++++.. .+.|.++++||++.. |.. + .+..+++..+
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR------Gp~------------------s--~evl~~l~~l-- 53 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNR------GPD------------------S--LETLRFVKSL-- 53 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCC------CcC------------------H--HHHHHHHHhc--
Confidence 589999976432 233444432 257999999999952 321 0 1223333333
Q ss_pred cCCceeecCCCccc
Q 008663 290 KVPIMVVEGNHEYE 303 (558)
Q Consensus 290 ~~P~~~v~GNHD~~ 303 (558)
...+..+.||||..
T Consensus 54 ~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 GDSAKTVLGNHDLH 67 (257)
T ss_pred CCCeEEEcCCchHH
Confidence 24678999999984
No 111
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.20 E-value=0.026 Score=55.46 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=38.8
Q ss_pred EEEEecCCCCCCh-HHHHHHHHhC--------CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008663 211 IAIVGDVGLTYNT-TSTVSHMISN--------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (558)
Q Consensus 211 favigD~g~~~~~-~~~l~~l~~~--------~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (558)
+.+|||+|..... ...++++... ..|.++++||++.. |.. . ....
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDR------Gp~------------S--------~~vl 54 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDR------GPE------------I--------RELL 54 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCC------CCC------------H--------HHHH
Confidence 3689999976432 2233443211 35799999999953 321 0 1122
Q ss_pred HhhhhhhccCCceeecCCCccc
Q 008663 282 RYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
+.+..+...-.++.+.||||..
T Consensus 55 ~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 55 EIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred HHHHHhhcCCCEEEEEccCcHH
Confidence 3333333234688999999963
No 112
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.11 E-value=0.025 Score=55.27 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=23.0
Q ss_pred EEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCccc
Q 008663 213 IVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTY 246 (558)
Q Consensus 213 vigD~g~~~~~-~~~l~~l~~~~pDfvl~~GDl~Y 246 (558)
++||+|..... .+.++.+.....|.+|++||++.
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vd 36 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVD 36 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeC
Confidence 78999965322 12333333346899999999995
No 113
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=95.08 E-value=0.034 Score=56.50 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=25.3
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHhC------CCCEEEEcCCccc
Q 008663 210 RIAIVGDVGLTYNT-TSTVSHMISN------RPDLILLVGDVTY 246 (558)
Q Consensus 210 rfavigD~g~~~~~-~~~l~~l~~~------~pDfvl~~GDl~Y 246 (558)
+++++||+|..... ..+++.+.+. ..+.+|++||++.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVD 46 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCD 46 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCC
Confidence 78999999976443 2334444321 2468999999995
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.00 E-value=0.052 Score=53.25 Aligned_cols=73 Identities=16% Similarity=0.421 Sum_probs=47.7
Q ss_pred eEEEEEecCCCCCChH--------------H---HHHHH-HhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCc
Q 008663 209 SRIAIVGDVGLTYNTT--------------S---TVSHM-ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (558)
Q Consensus 209 ~rfavigD~g~~~~~~--------------~---~l~~l-~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (558)
-+.++++|+|...... . .++++ .+.+|+-+|.+||+-.+- +.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~-----~~--------------- 79 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEF-----GK--------------- 79 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCcccccc-----Cc---------------
Confidence 4789999999875321 1 23322 356999999999998631 11
Q ss_pred cchhHHHHHHHHhhhhhhccCCceeecCCCccc
Q 008663 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (558)
.....|+....+++.+... -++++.||||-.
T Consensus 80 -~~~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 80 -SLRQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred -cccccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 0123455555666555433 499999999975
No 115
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=94.72 E-value=0.038 Score=55.88 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=25.9
Q ss_pred EEEEEecCCCCCCh-HHHHHHHH-hCCCCEEEEcCCccc
Q 008663 210 RIAIVGDVGLTYNT-TSTVSHMI-SNRPDLILLVGDVTY 246 (558)
Q Consensus 210 rfavigD~g~~~~~-~~~l~~l~-~~~pDfvl~~GDl~Y 246 (558)
++.+|||+|..... ...++++. ....|-++++||++.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVd 40 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVA 40 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccC
Confidence 46899999976433 33445543 235689999999995
No 116
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=93.55 E-value=1.4 Score=44.04 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECcccCceeee
Q 008663 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (558)
Q Consensus 357 Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (558)
+.+.+++++++++ ++..++||+.|--.-... ...+. ..++...+-+.++|+|+.+|.|..+-..
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~----~p~~~-q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYEN----YPTPE-QRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCCC----CCCHH-HHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 4588888888876 567899999997432111 11223 3344455556899999999999877664
No 117
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=93.23 E-value=0.64 Score=51.08 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHc-CCcE-EEECcccCcee
Q 008663 354 SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDV-VFNGHVHAYER 424 (558)
Q Consensus 354 ~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~Vdl-vlsGH~H~yeR 424 (558)
.-.|.+|-.+.++. ....-+|++.|.|.-... +....+.++...+ ++++ ||-||.|....
T Consensus 210 ei~~~~~~~~m~~~---~~idlii~lgH~~~~~~~--------e~~~~~~~ir~~~p~t~IqviGGHshird~ 271 (602)
T KOG4419|consen 210 EITQSEWEQDMVNT---TDIDLIIALGHSPVRDDD--------EWKSLHAEIRKVHPNTPIQVIGGHSHIRDF 271 (602)
T ss_pred HHhccchHHHHhhc---cCccEEEEecccccccch--------hhhhHHHHHhhhCCCCceEEECchhhhhhh
Confidence 34677888777776 345568999999964321 1112444454455 6888 99999996543
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=92.05 E-value=0.22 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+...+.|++++.++++=||.=.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred HHHHHHHHHHcCCeEEEEecccc
Confidence 46788899999999999999853
No 119
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=2 Score=38.97 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCcEEEECcccCceeeeeccCCccCCCCcEEEEeCCC
Q 008663 400 VAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDG 446 (558)
Q Consensus 400 ~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~~~~~~~~g~vyiv~G~g 446 (558)
+.+.-|-++..||+.+.||+|.++... -+|-.||..|++
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSa 135 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSA 135 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcc
Confidence 455566678899999999999998873 567788877765
No 120
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=91.03 E-value=0.31 Score=50.50 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.++..+.+++++.++++=||.-.
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46788899999999999999854
No 121
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=90.98 E-value=0.4 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCcEEEECccc
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVH 420 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H 420 (558)
.+++.+.++++++++++-||.=
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He~ 221 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQV 221 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCcc
Confidence 4688899999999999999973
No 122
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=89.15 E-value=0.46 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+++++.|++++.++++=||.-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCccc
Confidence 46788899999999999999854
No 123
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=89.04 E-value=0.6 Score=47.69 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+++++.+++++.++++=||.-.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccc
Confidence 47888899999999999999854
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=88.82 E-value=0.6 Score=48.06 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+++++.+++++.++++=||.-.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46888999999999999999854
No 125
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=88.33 E-value=0.76 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCcEEEECcc
Q 008663 399 RVAMEDLLYKYGVDVVFNGHV 419 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~ 419 (558)
.+.++..|++++.++++=||.
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCC
Confidence 478889999999999999998
No 126
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=88.12 E-value=0.61 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+++++.+++++.++++=||.-.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccc
Confidence 57888999999999999999854
No 127
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=87.41 E-value=0.73 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+++++.+++++.++++=||.-.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 46788899999999999999853
No 128
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=86.25 E-value=2.5 Score=50.20 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.6
Q ss_pred EeCCCCCCCEEEEEEecC---CCCCccceeEEEcCCC
Q 008663 168 RLTGLKPDTLYHYQCGDP---SIPAMSGTYCFRTMPD 201 (558)
Q Consensus 168 ~l~gL~P~T~Y~Yrvg~~---~~~~~S~~~~F~T~P~ 201 (558)
.+++|+|+|.|.+||..- +.+..|++.++.|+-.
T Consensus 677 l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~ 713 (1381)
T KOG4221|consen 677 LFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPES 713 (1381)
T ss_pred HhhcCCCCceEEEEEEEeccCCCCCcccceeccCccc
Confidence 356799999999999543 2346788899998644
No 129
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=85.97 E-value=3.7 Score=46.86 Aligned_cols=38 Identities=34% Similarity=0.571 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCCCEEEEEEecC---CCCCccceeEEEcCCC
Q 008663 164 IHHVRLTGLKPDTLYHYQCGDP---SIPAMSGTYCFRTMPD 201 (558)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~---~~~~~S~~~~F~T~P~ 201 (558)
.-+|+|+||+|+|+|-+||..- +-+..|....|.|.+.
T Consensus 497 ~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 497 TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 3478999999999999999643 2347889999999886
No 130
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=84.40 E-value=1.6 Score=45.16 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+.+.+.|++++.++++=||.-.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 46778899999999999999854
No 131
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=83.71 E-value=2 Score=44.41 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCcEEEECcc
Q 008663 399 RVAMEDLLYKYGVDVVFNGHV 419 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~ 419 (558)
.+++...++++++++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 467888899999999999997
No 132
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=83.52 E-value=10 Score=29.47 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCCCEEEEEEecC
Q 008663 164 IHHVRLTGLKPDTLYHYQCGDP 185 (558)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~ 185 (558)
..++.+.+|.|+++|.+||..-
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEE
Confidence 4577889999999999999654
No 133
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=81.13 E-value=27 Score=35.19 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCCCChHHHHHHHH-hCCCCEEEEcCCccc
Q 008663 208 PSRIAIVGDVGLTYNTTSTVSHMI-SNRPDLILLVGDVTY 246 (558)
Q Consensus 208 ~~rfavigD~g~~~~~~~~l~~l~-~~~pDfvl~~GDl~Y 246 (558)
-.||+.++|.|.-... +. -..-|+++|+||...
T Consensus 61 ~~r~VcisdtH~~~~~------i~~~p~gDvlihagdfT~ 94 (305)
T KOG3947|consen 61 YARFVCISDTHELTFD------INDIPDGDVLIHAGDFTN 94 (305)
T ss_pred ceEEEEecCcccccCc------cccCCCCceEEeccCCcc
Confidence 3699999999854211 11 124589999999983
No 134
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=77.88 E-value=17 Score=27.21 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCCCEEEEEEecCC
Q 008663 164 IHHVRLTGLKPDTLYHYQCGDPS 186 (558)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~~ 186 (558)
-+...+.+|+|+++|.++|....
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEEc
Confidence 46788999999999999986543
No 135
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=77.02 E-value=1.4 Score=42.54 Aligned_cols=83 Identities=12% Similarity=0.317 Sum_probs=42.1
Q ss_pred EEEEecCCCCCCh--HHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHH---HHHH
Q 008663 211 IAIVGDVGLTYNT--TSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPR---WDYW 280 (558)
Q Consensus 211 favigD~g~~~~~--~~~l~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~---wd~~ 280 (558)
|++++|.+...+. .+.+.++. +.+|+.+|++|+++.......... .....+... ....
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSG------------SVPDSYSFEEDFLKEL 68 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---------------HHCCHHHHHHHHC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccc------------cccccccccHHHHHHH
Confidence 6788898877432 23333333 457999999999996432110000 000011111 1222
Q ss_pred HHhhhhhhccCCceeecCCCccccC
Q 008663 281 GRYMQPVLSKVPIMVVEGNHEYEEQ 305 (558)
Q Consensus 281 ~~~l~~l~~~~P~~~v~GNHD~~~~ 305 (558)
.+.+..+...++++.+||+||....
T Consensus 69 ~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 69 DSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred HHHHhhcccccEEEEeCCCcccccc
Confidence 3445566678999999999998643
No 136
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=73.78 E-value=13 Score=42.79 Aligned_cols=123 Identities=21% Similarity=0.168 Sum_probs=71.4
Q ss_pred CCCCeEEEEecC-CCCceEEEEEcCcccccCCCCCCCCCCCccEEEEeccCCCCceEEE-----eEE--EEeeeecccCC
Q 008663 84 FEPEQISVSLSS-AHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKAT-----GRS--LVYSQLYPFLG 155 (558)
Q Consensus 84 ~~P~qi~lt~~~-~p~s~~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~-----g~~--~~y~~~~~~~g 155 (558)
-++.-++|+... +-+++.++|....+. +. -. -..-.+.|..++......-. |.. ......+| ++
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~-d~-r~-----llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~-~~ 558 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPP-DM-RD-----LLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP-DL 558 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCc-ch-hh-----hheeeEeeccCCccccceecCccccccCcceEEeccCC-cC
Confidence 456777777774 458999999987653 10 00 11235778887743322211 211 11111122 22
Q ss_pred ccccccCcEEEEEeCCCCCCCEEEEEEecCC-------CCCccceeEEEcCCCCCCCCCCeEEEEEecCC
Q 008663 156 LQNYTSGIIHHVRLTGLKPDTLYHYQCGDPS-------IPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVG 218 (558)
Q Consensus 156 ~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~-------~~~~S~~~~F~T~P~~~~~~~~~rfavigD~g 218 (558)
.-+ ++.-.-..|.||+|.|.|-|-|..-. ..+.|++..++|.|...+. |+.++.-++..
T Consensus 559 ~p~--~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp--Pl~~ls~snsS 624 (1025)
T KOG4258|consen 559 IPN--DGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP--PLDVLSKSNSS 624 (1025)
T ss_pred CCc--cccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC--cchhhhccCcc
Confidence 211 22222678999999999999775321 1278999999999876442 66666665543
No 137
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=73.11 E-value=20 Score=42.56 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEeccCCCCceEEEeEEEEeeeecccCCccccccCcE
Q 008663 85 EPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGII 164 (558)
Q Consensus 85 ~P~qi~lt~~~~p~s~~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~~~~g~~~~~~~~~ 164 (558)
+|..+++ .+.+-++|.|+|.......|- ...=.|+|....+.. +..... ...+..
T Consensus 822 ap~~~~~-~~~s~s~~~v~W~~~~~~nG~--------l~gY~v~Y~~~~~~~-----~~~~~~-----------~i~~~~ 876 (1051)
T KOG3513|consen 822 APTKLSA-KPLSSSEVNLSWKPPLWDNGK--------LTGYEVKYWKINEKE-----GSLSRV-----------QIAGNR 876 (1051)
T ss_pred CCcccee-ecccCceEEEEecCcCccCCc--------cceeEEEEEEcCCCc-----ccccce-----------eecCCc
Confidence 3444433 233467899999654332221 123468887766543 111110 112344
Q ss_pred EEEEeCCCCCCCEEEEEEecCCC---CCccceeEEEcCCCC
Q 008663 165 HHVRLTGLKPDTLYHYQCGDPSI---PAMSGTYCFRTMPDS 202 (558)
Q Consensus 165 h~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~P~~ 202 (558)
-.++|+||+|+|.|++.|...++ +..|...+-.|.+++
T Consensus 877 ~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 877 TSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred ceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 56789999999999999865432 233444444555443
No 138
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=69.98 E-value=28 Score=41.83 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=29.0
Q ss_pred EEEEEeCCCCCCCEEEEEEecCC---CCCccceeEEEcCCC
Q 008663 164 IHHVRLTGLKPDTLYHYQCGDPS---IPAMSGTYCFRTMPD 201 (558)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~P~ 201 (558)
.++.+|.||+|.|.|.|||...+ .+..|+..+|+|+-.
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd 613 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSD 613 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccC
Confidence 46678999999999999996544 235667888888643
No 139
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=57.11 E-value=12 Score=34.32 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=22.6
Q ss_pred EEeCCCCCCCEEEEEE--ecCCCCCccceeEEEcCCCC
Q 008663 167 VRLTGLKPDTLYHYQC--GDPSIPAMSGTYCFRTMPDS 202 (558)
Q Consensus 167 v~l~gL~P~T~Y~Yrv--g~~~~~~~S~~~~F~T~P~~ 202 (558)
=++++|.|||+||.+. ..+.....|.+..-.|.|-.
T Consensus 104 YqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~~ 141 (184)
T PF07353_consen 104 YQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNRK 141 (184)
T ss_pred EEeeccCCCcEEEEEEEEecCccceecceecccccccc
Confidence 3679999999998654 44443344445555565543
No 140
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=56.54 E-value=70 Score=32.67 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=49.1
Q ss_pred CeEEEEEecCCCCCCh-HHHHHHHHh---------CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008663 208 PSRIAIVGDVGLTYNT-TSTVSHMIS---------NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (558)
Q Consensus 208 ~~rfavigD~g~~~~~-~~~l~~l~~---------~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (558)
..+|+++||.+..... -+.++++.+ ..|-.+|+.|+++..-.. .+. ...+.|....
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~--~~~------------~~~~~yk~~F 92 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFD--YNR------------NFHKVYIKGF 92 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCccc--CCC------------CchHHHHHHH
Confidence 4699999999987421 122222211 127889999999853211 010 1123455556
Q ss_pred HHHHH-hh---hhhhccCCceeecCCCccc
Q 008663 278 DYWGR-YM---QPVLSKVPIMVVEGNHEYE 303 (558)
Q Consensus 278 d~~~~-~l---~~l~~~~P~~~v~GNHD~~ 303 (558)
+.+.. .+ ..+..+.-+++|||-+|-.
T Consensus 93 d~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 93 EKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 66554 22 3355778899999999974
No 141
>PRK10301 hypothetical protein; Provisional
Probab=43.94 E-value=2.3e+02 Score=25.03 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=23.3
Q ss_pred cEEEEEeC-CCCCCC-EEEEEEecCCCCCccceeEEE
Q 008663 163 IIHHVRLT-GLKPDT-LYHYQCGDPSIPAMSGTYCFR 197 (558)
Q Consensus 163 ~~h~v~l~-gL~P~T-~Y~Yrvg~~~~~~~S~~~~F~ 197 (558)
....+.+. .|.||+ +-.||+-..++-..+..|+|+
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~~G~~~F~ 122 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFS 122 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEecCCCccCCeEEEE
Confidence 44567775 689985 257787766645666677774
No 142
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=40.37 E-value=24 Score=36.80 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCcEEEECccc
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVH 420 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H 420 (558)
.+.+++++.+.++|+++-+|.=
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqv 254 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQV 254 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCcc
Confidence 4678888999999999999864
No 143
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=35.62 E-value=59 Score=32.33 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEecCCCCCChHHHHHHHH--hCCC-CEEEEcCCccc
Q 008663 211 IAIVGDVGLTYNTTSTVSHMI--SNRP-DLILLVGDVTY 246 (558)
Q Consensus 211 favigD~g~~~~~~~~l~~l~--~~~p-Dfvl~~GDl~Y 246 (558)
+.+.||+|.. ..+.+.-.. ..-| .=-|++||+++
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVD 81 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVD 81 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhc
Confidence 4689999965 233333222 1222 24678999995
No 144
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=33.10 E-value=70 Score=21.77 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=12.6
Q ss_pred hhh-HHHHHH-HHHHHHHHHHHhhh
Q 008663 15 VFE-LNNILS-LVLTLTITSILLAN 37 (558)
Q Consensus 15 ~~~-~~~~~~-~~~~~~~~~~~~~~ 37 (558)
-|| ++..+. ++++++++++.+++
T Consensus 8 ~fekiT~v~v~lM~i~tvg~v~~~a 32 (35)
T PF13253_consen 8 TFEKITMVVVWLMLILTVGSVVASA 32 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477 444333 44555666666554
No 145
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=29.89 E-value=63 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=21.5
Q ss_pred EEEEecCCCCCChHHHHHHH--HhCCCCE-EEEcCCccc
Q 008663 211 IAIVGDVGLTYNTTSTVSHM--ISNRPDL-ILLVGDVTY 246 (558)
Q Consensus 211 favigD~g~~~~~~~~l~~l--~~~~pDf-vl~~GDl~Y 246 (558)
+.+.||.|... ...++-+ -...||. .+++||++.
T Consensus 62 vtvcGDvHGqf--~dl~ELfkiGG~~pdtnylfmGDyvd 98 (319)
T KOG0371|consen 62 VTVCGDVHGQF--HDLIELFKIGGLAPDTNYLFMGDYVD 98 (319)
T ss_pred eEEecCcchhH--HHHHHHHHccCCCCCcceeeeeeecc
Confidence 66899998653 3333333 2335664 678999995
No 146
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.88 E-value=67 Score=27.80 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCCCCEEEEEEec
Q 008663 162 GIIHHVRLTGLKPDTLYHYQCGD 184 (558)
Q Consensus 162 ~~~h~v~l~gL~P~T~Y~Yrvg~ 184 (558)
+-++++.+.++.+|+.|-|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45888999999999999999973
No 147
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.72 E-value=66 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCCCCEEEEEEec
Q 008663 162 GIIHHVRLTGLKPDTLYHYQCGD 184 (558)
Q Consensus 162 ~~~h~v~l~gL~P~T~Y~Yrvg~ 184 (558)
+-+.++.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999964
No 148
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.77 E-value=71 Score=25.84 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.9
Q ss_pred cEEEEEeCCCCCCCEEEEEEe
Q 008663 163 IIHHVRLTGLKPDTLYHYQCG 183 (558)
Q Consensus 163 ~~h~v~l~gL~P~T~Y~Yrvg 183 (558)
-++++.+.++ +|+.|.|++.
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~ 59 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLD 59 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEEC
Confidence 4678899999 9999999997
No 149
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=26.81 E-value=3.6e+02 Score=22.69 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCcEEEECcccC
Q 008663 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (558)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (558)
.+.+.+..+++++|+++-|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 46777888899999888887753
No 150
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=25.56 E-value=57 Score=27.30 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.0
Q ss_pred EEEeCCCCCCCEEEEEEec
Q 008663 166 HVRLTGLKPDTLYHYQCGD 184 (558)
Q Consensus 166 ~v~l~gL~P~T~Y~Yrvg~ 184 (558)
.+.|.+|+|+|.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 4679999999999999986
No 151
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.47 E-value=92 Score=25.99 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCCCCEEEEEEecC
Q 008663 162 GIIHHVRLTGLKPDTLYHYQCGDP 185 (558)
Q Consensus 162 ~~~h~v~l~gL~P~T~Y~Yrvg~~ 185 (558)
+-++++.+.++.+|+.|.||+...
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEEe
Confidence 457889999999999999999643
No 152
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=21.94 E-value=5e+02 Score=31.48 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=51.5
Q ss_pred CCCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEec----cCCCCceEEEeEEEEeeeecccCCcccc
Q 008663 84 FEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGT----RRSQLNRKATGRSLVYSQLYPFLGLQNY 159 (558)
Q Consensus 84 ~~P~qi~lt~~~~p~s~~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~----~~~~~~~~~~g~~~~y~~~~~~~g~~~~ 159 (558)
..|++|++.=- ..+++.++|.-+.- ...++..|-. .....++.+. + .|..
T Consensus 616 gpP~~v~~~~i-~~t~~~lsW~~g~d------------n~SpI~~Y~iq~rt~~~~~W~~v~-~-------vp~~----- 669 (1051)
T KOG3513|consen 616 GPPPDVHVDDI-SDTTARLSWSPGSD------------NNSPIEKYTIQFRTPFPGKWKAVT-T-------VPGN----- 669 (1051)
T ss_pred CCCCceeEeee-ccceEEEEeecCCC------------CCCCceEEeEEecCCCCCcceEee-E-------CCCc-----
Confidence 35677766422 25889999987542 1133555544 3222333332 1 1211
Q ss_pred ccCcEEEEEeCCCCCCCEEEEEEecCCCC---Ccc-ceeEEEcCCCCC
Q 008663 160 TSGIIHHVRLTGLKPDTLYHYQCGDPSIP---AMS-GTYCFRTMPDSS 203 (558)
Q Consensus 160 ~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~---~~S-~~~~F~T~P~~~ 203 (558)
..|- +.+++-+|.|-..|.|||...+.- .-| +.-..+|.++..
T Consensus 670 ~~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P 716 (1051)
T KOG3513|consen 670 ITGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP 716 (1051)
T ss_pred ccCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC
Confidence 2334 668889999999999999755422 112 223456666543
No 153
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=21.27 E-value=1.4e+02 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEecCCCCCChHHHHHHHHh---CCCCE-EEEcCCccc
Q 008663 211 IAIVGDVGLTYNTTSTVSHMIS---NRPDL-ILLVGDVTY 246 (558)
Q Consensus 211 favigD~g~~~~~~~~l~~l~~---~~pDf-vl~~GDl~Y 246 (558)
+.+.||+|.. ....+ ++-+ .-||. -|++||++.
T Consensus 48 VTvCGDIHGQ--FyDL~-eLFrtgG~vP~tnYiFmGDfVD 84 (306)
T KOG0373|consen 48 VTVCGDIHGQ--FYDLL-ELFRTGGQVPDTNYIFMGDFVD 84 (306)
T ss_pred eeEeeccchh--HHHHH-HHHHhcCCCCCcceEEeccccc
Confidence 4578999864 22232 2222 23553 578999995
No 154
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=21.05 E-value=82 Score=32.40 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=0.0
Q ss_pred ccCcEEEEEeCCCCCCCEEEEEE
Q 008663 160 TSGIIHHVRLTGLKPDTLYHYQC 182 (558)
Q Consensus 160 ~~~~~h~v~l~gL~P~T~Y~Yrv 182 (558)
+.|.--.-+|.+|+|+|+||+-|
T Consensus 10 Cvg~~t~~t~~~L~p~t~YyfdV 32 (300)
T PF10179_consen 10 CVGQKTNQTLSGLKPDTTYYFDV 32 (300)
T ss_pred EcCCCceEEeccCCCCCeEEEEE
No 155
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.76 E-value=95 Score=31.52 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCc-EEEECcccCc
Q 008663 396 ECMRVAMEDLLYKYGVD-VVFNGHVHAY 422 (558)
Q Consensus 396 ~~~r~~l~~ll~~~~Vd-lvlsGH~H~y 422 (558)
.++-+.+.+||.+++.| |||.||+=..
T Consensus 140 ~eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 35678899999999999 5799999743
No 156
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=20.64 E-value=79 Score=31.91 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=32.0
Q ss_pred HHHHHHHhhcccCCCCEEEEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCc-EEEECcccC
Q 008663 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVD-VVFNGHVHA 421 (558)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~Vd-lvlsGH~H~ 421 (558)
+.|+.-|+..++-..+ ++..|.| ..++-+.+.+||++++.| |||.||+-.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK-----------EKEMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec-----------chhchHHHHHHHHHhCCCEEEEeCchhh
Confidence 3466666655433332 3333333 124567889999999999 579999954
No 157
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=20.45 E-value=1.2e+02 Score=30.05 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEeCCcccccCCCcccchHHHHHHHHHHHHHcCCcEEEECccc
Q 008663 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVH 420 (558)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H 420 (558)
+++.|||++-.............+.+.. +.++++ .+++-|+.
T Consensus 56 lIItHHP~~f~~~~~~~~~~~~~~~~~~-li~~~I-~vy~~Ht~ 97 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSLTGDDYKGKIIEK-LIKNGI-SVYSAHTN 97 (241)
T ss_dssp EEEESS-SSSSTSSHCHCHSHHHHHHHH-HHHTT--EEEEESHH
T ss_pred EEEEcCchhhcCCccccccchhhHHHHH-HHHCCC-EEEEeccc
Confidence 6678998765432221111122333433 444666 45677776
Done!