Your job contains 1 sequence.
>008664
MEMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNP
NQNPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVP
HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN
SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV
IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV
GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP
YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ
PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI
SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPP
SLEGYKFLDWPKSNTTDK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008664
(558 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2032432 - symbol:AT1G24290 species:3702 "Arabi... 848 3.4e-182 3
UNIPROTKB|F1P1N3 - symbol:WRNIP1 "Uncharacterized protein... 1109 2.2e-112 1
ZFIN|ZDB-GENE-040426-2415 - symbol:wrnip1 "Werner helicas... 1081 2.1e-109 1
UNIPROTKB|F1RWX5 - symbol:WRNIP1 "Uncharacterized protein... 1052 2.5e-106 1
UNIPROTKB|F1MGL0 - symbol:WRNIP1 "Uncharacterized protein... 1049 5.1e-106 1
RGD|628836 - symbol:Wrnip1 "Werner helicase interacting p... 1049 5.1e-106 1
UNIPROTKB|Q8CG07 - symbol:Wrnip1 "ATPase WRNIP1" species:... 1049 5.1e-106 1
UNIPROTKB|F1PVV3 - symbol:WRNIP1 "Uncharacterized protein... 1044 1.7e-105 1
MGI|MGI:1926153 - symbol:Wrnip1 "Werner helicase interact... 1044 1.7e-105 1
UNIPROTKB|Q96S55 - symbol:WRNIP1 "ATPase WRNIP1" species:... 1043 2.2e-105 1
TIGR_CMR|GSU_2067 - symbol:GSU_2067 "ATPase, AAA family" ... 554 1.5e-102 2
TIGR_CMR|DET_1309 - symbol:DET_1309 "ATPase, AAA family" ... 518 1.8e-101 2
TIGR_CMR|CHY_2201 - symbol:CHY_2201 "ATPase, AAA family" ... 514 3.4e-94 2
UNIPROTKB|F1P1N4 - symbol:WRNIP1 "Uncharacterized protein... 905 9.3e-91 1
POMBASE|SPAC26H5.02c - symbol:SPAC26H5.02c "DNA replicati... 480 1.5e-89 2
TIGR_CMR|SO_2308 - symbol:SO_2308 "ATPase, AAA family" sp... 487 8.0e-89 2
ASPGD|ASPL0000029025 - symbol:AN5617 species:162425 "Emer... 458 6.4e-87 2
DICTYBASE|DDB_G0272158 - symbol:wrnip1 "putative Werner h... 866 1.3e-86 1
UNIPROTKB|Q607H8 - symbol:MCA1782 "ATPase, AAA family" sp... 457 1.7e-86 2
UNIPROTKB|P0AAZ4 - symbol:rarA species:83333 "Escherichia... 492 1.3e-84 2
CGD|CAL0001352 - symbol:orf19.3019 species:5476 "Candida ... 842 4.4e-84 1
UNIPROTKB|Q9KSZ8 - symbol:VC_1108 "Putative uncharacteriz... 483 1.9e-83 2
TIGR_CMR|VC_1108 - symbol:VC_1108 "conserved hypothetical... 483 1.9e-83 2
UNIPROTKB|P39918 - symbol:rarA "Replication-associated re... 429 5.8e-82 2
TIGR_CMR|CBU_1189 - symbol:CBU_1189 "ATPase, AAA family d... 429 5.8e-82 2
TIGR_CMR|SPO_0515 - symbol:SPO_0515 "ATPase, AAA family" ... 422 1.9e-81 2
TIGR_CMR|CPS_2757 - symbol:CPS_2757 "ATPase, AAA family" ... 798 2.0e-79 1
SGD|S000005162 - symbol:MGS1 "Protein with DNA-dependent ... 787 3.0e-78 1
TIGR_CMR|BA_4628 - symbol:BA_4628 "ATPase, AAA family" sp... 393 3.7e-70 2
UNIPROTKB|Q71ZF6 - symbol:LMOf2365_1533 "ATPase, AAA fami... 375 1.6e-63 2
TIGR_CMR|CJE_0191 - symbol:CJE_0191 "ATPase, AAA family p... 288 3.4e-44 2
CGD|CAL0000272 - symbol:orf19.3601 species:5476 "Candida ... 302 3.3e-24 1
UNIPROTKB|Q59Y48 - symbol:CaO19.11084 "Putative uncharact... 302 3.3e-24 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 188 5.8e-12 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 185 2.0e-11 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 180 5.4e-11 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 180 5.6e-11 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 178 9.0e-11 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 176 1.6e-10 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 166 1.8e-09 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 166 1.9e-09 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 166 1.9e-09 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 165 2.0e-09 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 168 2.1e-09 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 165 3.0e-09 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 128 3.1e-09 2
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 163 3.3e-09 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 164 3.7e-09 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 163 5.8e-09 2
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 160 8.8e-09 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 160 8.8e-09 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 159 1.4e-08 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 159 1.4e-08 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 155 2.7e-08 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 156 3.7e-08 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 156 3.7e-08 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 155 3.9e-08 2
TIGR_CMR|ECH_0319 - symbol:ECH_0319 "holliday junction DN... 154 3.9e-08 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 154 4.1e-08 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 154 4.1e-08 1
TIGR_CMR|CBU_1570 - symbol:CBU_1570 "Holliday junction DN... 154 4.7e-08 1
UNIPROTKB|Q9KR02 - symbol:ruvB "Holliday junction ATP-dep... 153 5.3e-08 1
TIGR_CMR|VC_1845 - symbol:VC_1845 "Holliday junction DNA ... 153 5.3e-08 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 151 8.2e-08 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 151 9.8e-08 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 152 1.0e-07 2
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 149 1.4e-07 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 152 1.6e-07 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 148 2.0e-07 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 149 2.2e-07 1
UNIPROTKB|P0A812 - symbol:ruvB "branch migration of Holli... 147 2.5e-07 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 147 3.0e-07 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 147 3.0e-07 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 145 4.2e-07 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 145 4.4e-07 1
TIGR_CMR|SO_2429 - symbol:SO_2429 "Holliday junction DNA ... 144 5.4e-07 1
TIGR_CMR|CHY_1522 - symbol:CHY_1522 "Holliday junction DN... 143 7.3e-07 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 143 7.3e-07 1
TIGR_CMR|NSE_0575 - symbol:NSE_0575 "holliday junction DN... 142 8.9e-07 1
TIGR_CMR|BA_4650 - symbol:BA_4650 "Holliday junction DNA ... 142 9.1e-07 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 140 1.1e-06 1
TIGR_CMR|DET_0606 - symbol:DET_0606 "Holliday junction DN... 141 1.3e-06 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 141 1.3e-06 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 141 1.4e-06 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 140 1.6e-06 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 139 1.9e-06 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 139 1.9e-06 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 138 2.7e-06 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 138 2.7e-06 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 138 3.2e-06 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 137 3.4e-06 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 137 4.0e-06 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 137 4.0e-06 1
TIGR_CMR|APH_0166 - symbol:APH_0166 "holliday junction DN... 136 4.1e-06 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 136 4.4e-06 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 135 6.7e-06 1
UNIPROTKB|P63975 - symbol:dnaX "DNA polymerase III subuni... 91 7.0e-06 3
TIGR_CMR|BA_4703 - symbol:BA_4703 "ATP-dependent protease... 112 8.2e-06 3
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 132 1.2e-05 1
TIGR_CMR|SPO_3115 - symbol:SPO_3115 "Holliday junction DN... 132 1.3e-05 1
WARNING: Descriptions of 22 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 848 (303.6 bits), Expect = 3.4e-182, Sum P(3) = 3.4e-182
Identities = 157/197 (79%), Positives = 180/197 (91%)
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A+V++DDAKEA QCKHLAYD+AGE+HYNLISALHKSMRG DA+AAIYWLARMLEGGE+PL
Sbjct: 321 AVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEGGEEPL 380
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+RFASED+GLADP AL QAV+CYQA HFLGMPECNVILAQC AYLALAPKSI++
Sbjct: 381 YIARRLIRFASEDIGLADPSALTQAVACYQASHFLGMPECNVILAQCTAYLALAPKSIAV 440
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
YRA+GAAQKV+++SVGQNEGVPLHLRNAPTKLMKE+GYGK YIY P DPS A Q++LPP
Sbjct: 441 YRAIGAAQKVVKDSVGQNEGVPLHLRNAPTKLMKELGYGKEYIYPPSDPSSAAGQTYLPP 500
Query: 541 SLEGYKFLDWPKSNTTD 557
SL +KFL+WP+ + D
Sbjct: 501 SLLHHKFLEWPEGASGD 517
Score = 844 (302.2 bits), Expect = 3.4e-182, Sum P(3) = 3.4e-182
Identities = 177/272 (65%), Positives = 205/272 (75%)
Query: 68 KLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSER 127
KLDRF K + A K + + + RH + S++ H H PLSER
Sbjct: 49 KLDRFLRLHPKALAPAMGDDSSKRPNPKTQIHVAADDSNKRHKLSSSS--HRQHQPLSER 106
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-- 185
MRP ++DVVGQDHLLSP+SLLRSAV SNRLPSI+FWGPPGTGKT++AK+++NS
Sbjct: 107 MRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSSKDPSL 166
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
Y+FV LSAVTSGVKDVRDAVE A++L ++ KRTVLF+DEVHRFNKSQQD+FLPVIEDGS
Sbjct: 167 YRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLPVIEDGS 226
Query: 246 IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRV 305
I+FIGATTENPSFHLITPLLSRCRVLTLNPLKP+ VE LL+RAVDD GL SV
Sbjct: 227 ILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLPNSV----- 281
Query: 306 EVNHDAIEFLCSNCDGDARVALNALEISAITA 337
EV+ IEFL +NCDGDARVALNALEISA A
Sbjct: 282 EVDDSVIEFLANNCDGDARVALNALEISATMA 313
Score = 114 (45.2 bits), Expect = 3.4e-182, Sum P(3) = 3.4e-182
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 3 MEQLLSMGFPDXXXXXXXXXTGGKSTLKATEWILSHKSSTTTT 45
MEQL+SMGF TGG S KAT+WILSH+SS +T
Sbjct: 1 MEQLVSMGFSSDLAAEALTATGGDSIQKATDWILSHRSSPQST 43
>UNIPROTKB|F1P1N3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030174 "regulation
of DNA-dependent DNA replication initiation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AC157662
IPI:IPI00597973 Ensembl:ENSGALT00000020968 ArrayExpress:F1P1N3
Uniprot:F1P1N3
Length = 559
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 228/452 (50%), Positives = 295/452 (65%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
++ A + PL++R+RP + D VGQ+ +L ++LLRS + S+ +PS+I WGPPG GKT
Sbjct: 109 ASVAQRLEGQPLADRLRPDTLRDYVGQERVLGAHTLLRSLLESHEIPSLILWGPPGCGKT 168
Query: 173 TLAKAIVNSVAVS-YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TLA I NS +FV LSA ++ DVRD + A+ + ++T+LF+DE+HRFNK
Sbjct: 169 TLAHIIANSSKKKGMRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNK 228
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L L +E +L RAV
Sbjct: 229 SQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSVEAMEAILLRAVKS 288
Query: 292 V--------NNGLSKSVGGTR------VEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
+ N S + G ++ V + A+ L CDGDAR LN L++ A+ A
Sbjct: 289 LGVQVLGQGNQHSSSATGSSKESSELPVYIEEKALSTLAYLCDGDARTGLNGLQL-AVQA 347
Query: 338 AXXXXXXXXXXXXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHK 397
++GCS L+T + KE Q H+ YDRAGEEHYN ISALHK
Sbjct: 348 RLAAGKTTLLSF-----TEGCSVNGVLITEEHVKEGLQRSHILYDRAGEEHYNCISALHK 402
Query: 398 SMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFL 457
SMRG+D +A++YWLARMLEGGE PLY+ARRLVRFASED+GLADPLAL QAV+ YQ CHF+
Sbjct: 403 SMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPLALTQAVAAYQGCHFI 462
Query: 458 GMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKE 517
GMPEC VILAQCV Y A APKSI +YRA G ++ +R G VPLHLRNAPT+LMK+
Sbjct: 463 GMPECEVILAQCVVYFARAPKSIEVYRAYGNVKECLRMHTGPLPPVPLHLRNAPTRLMKD 522
Query: 518 IGYGKGYIYTP--DDPSAKQSFLPPSLEGYKF 547
+GYGKGY Y P +P +Q +LP L+G F
Sbjct: 523 LGYGKGYKYNPMYKEP-VEQDYLPEELKGTDF 553
>ZFIN|ZDB-GENE-040426-2415 [details] [associations]
symbol:wrnip1 "Werner helicase interacting protein
1" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-040426-2415 GO:GO:0005524 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886
Pfam:PF12002 CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD
OrthoDB:EOG457568 GeneTree:ENSGT00390000008538 EMBL:CU693494
EMBL:BC067729 IPI:IPI00503321 RefSeq:NP_998085.1 UniGene:Dr.82012
STRING:Q6NW46 Ensembl:ENSDART00000004848 GeneID:405856
KEGG:dre:405856 InParanoid:Q6NW46 NextBio:20817818 Uniprot:Q6NW46
Length = 546
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 239/492 (48%), Positives = 307/492 (62%)
Query: 80 SSAAANAVQEKEKDREIEP----SPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNIND 135
S+A A AVQ+ + E+ P SP RLK + PL+E +RP + +
Sbjct: 82 SAAPAAAVQQPQCPAEVAPPAACSPRALRLKNQK-------------PLAELLRPSTLEE 128
Query: 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSA 193
GQ+ L+ +LLRS + S +PS+I WGPPG GKTTLA I +S+ + +FV LSA
Sbjct: 129 YFGQNKLIGEQTLLRSLLKSQEIPSLILWGPPGCGKTTLAHIIASSIKQKGTGRFVTLSA 188
Query: 194 VTSGVKDVRDAVEDAR-KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252
++ V DVR+ ++ A+ +LR+ ++TVLF+DE+HRFNKSQQD+FLP +E G+I IGAT
Sbjct: 189 TSASVSDVREVIKQAQNELRL-CKRKTVLFIDEIHRFNKSQQDTFLPHVECGTITLIGAT 247
Query: 253 TENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD-------DVNNGLSKSV-GGTR 304
TENPSF + + LLSRCRVL L L V +L+RAVD D S + +
Sbjct: 248 TENPSFQVNSALLSRCRVLVLERLSVEAVGSILRRAVDFLDLRILDSEERHSSEICSEAQ 307
Query: 305 VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXXXXXXXXSDGCSPYVAL 364
V V A++ L CDGDAR ALN L++ A+ A +
Sbjct: 308 VCVEQKALDTLAHLCDGDARAALNGLQL-AVQACVLQSSSNHNRSST------------V 354
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
V KEA Q H+ YD+AGEEHYN ISALHKSMRG+DA+AA+YWLARMLEGGE PLY+
Sbjct: 355 VREQHIKEALQRSHILYDKAGEEHYNCISALHKSMRGSDANAALYWLARMLEGGEDPLYV 414
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
ARRLVRFASED+GLADP+AL+QAV+ +QACH +GMPEC VILAQC YLA APKS+ +Y+
Sbjct: 415 ARRLVRFASEDIGLADPVALSQAVAAFQACHLIGMPECEVILAQCAVYLARAPKSVEVYK 474
Query: 485 ALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DPSAKQSFLPPSLE 543
A + +R G VPLHLRNAPTKLMK +GY KGY Y P+ KQ +LP L
Sbjct: 475 AYNNVKMCLRNHKGPLPSVPLHLRNAPTKLMKNLGYAKGYKYNPNYSGPVKQEYLPEELR 534
Query: 544 GYKFLDWPKSNT 555
G F W S++
Sbjct: 535 GVDFFTWTPSDS 546
>UNIPROTKB|F1RWX5 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:CU041352
Ensembl:ENSSSCT00000001102 Uniprot:F1RWX5
Length = 512
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 221/441 (50%), Positives = 279/441 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++R+RP + D VGQ + P +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 73 PLADRLRPDALQDFVGQGRAVGPETLLRSLLEANEVPSLILWGPPGCGKTTLAHIIANNS 132
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 133 KKHSIRFVTLSATSAKTTDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 192
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L V +L RA++ +
Sbjct: 193 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAINSLGIHVLDSSR 252
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
+ LS S + V + A++ L DGDAR LN L+++ +
Sbjct: 253 PADPLSHSSNSSSEPSVFIEDKAVDTLAHLSDGDARAGLNGLQLAVLARLSARKVFGKKT 312
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
P LVT D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +AA+
Sbjct: 313 GQTY------PPGRVLVTEGDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNAAL 366
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWL RMLEGGE PLY+ARRLVRFASEDVGLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 367 YWLGRMLEGGEDPLYVARRLVRFASEDVGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 426
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV YLA APKSI +Y A + +R G VPLHLRNAPT+LMK++GYG+GY Y P
Sbjct: 427 CVVYLARAPKSIEVYSAYSNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGQGYKYNP 486
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P Q +LP L G F
Sbjct: 487 AYSEP-VDQEYLPEELRGVDF 506
>UNIPROTKB|F1MGL0 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538
EMBL:DAAA02055908 IPI:IPI00867370 Ensembl:ENSBTAT00000044289
Uniprot:F1MGL0
Length = 489
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 222/441 (50%), Positives = 281/441 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D VGQ + P +LLRS + ++ +PS+I WGPPG GKTTLA I N S
Sbjct: 50 PLADTMRPDALQDFVGQGRAVGPETLLRSLLEASEVPSLILWGPPGCGKTTLAHIIANNS 109
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 110 KKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPHV 169
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL---SK 298
E G+I IGATTENPSF + LLSRCRV+ L L V +L RAV+ + + S+
Sbjct: 170 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAVNSLGIQVLDSSR 229
Query: 299 -----SVGG-----TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
S GG + V + A++ L DGDAR LN L+++ +
Sbjct: 230 PADPLSHGGNSSSESSVLIEDKAVDTLAHLSDGDARAGLNGLQLAVLARLSARKTFGKKG 289
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
P LVT D KE Q H+ YDRAGEEHYN ISALHKSMRG+D+ AA+
Sbjct: 290 ------GQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDSSAAL 343
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWL RMLEGGE PLY+ARRLVRFASEDVGLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 344 YWLGRMLEGGEDPLYVARRLVRFASEDVGLADPSALTQAVATYQGCHFIGMPECEVLLAQ 403
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV YLA APKS+ +Y A + +R G VPLHLRNAPT+LMK++GYG+GY Y P
Sbjct: 404 CVVYLARAPKSVEVYSAYNNVKACLRGHQGPLPPVPLHLRNAPTRLMKDLGYGQGYKYNP 463
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P +Q +LP L G F
Sbjct: 464 AYSEP-VEQEYLPQELRGVDF 483
>RGD|628836 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10116 "Rattus norvegicus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO;ISS] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734 RGD:628836
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 218/441 (49%), Positives = 280/441 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + T LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
+ LS S + V + A++ L DGDAR LN L+++ +
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKMFCKKS 460
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 461 GQTY------SPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDF 654
>UNIPROTKB|Q8CG07 [details] [associations]
symbol:Wrnip1 "ATPase WRNIP1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 RGD:628836 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886 Pfam:PF12002
CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 218/441 (49%), Positives = 280/441 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + T LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
+ LS S + V + A++ L DGDAR LN L+++ +
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKMFCKKS 460
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 461 GQTY------SPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDF 654
>UNIPROTKB|F1PVV3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR021886 Pfam:PF12002
OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AAEX03017467
Ensembl:ENSCAFT00000014690 Uniprot:F1PVV3
Length = 468
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 217/441 (49%), Positives = 277/441 (62%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+ +MRP + D +GQ + ++LLRS + + +PS+I WGPPG GKTTLA I N S
Sbjct: 29 PLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKTTLAHIIANNS 88
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 89 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 148
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 149 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 208
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
+ LS S + V + A++ L DGDAR LN L+++ +
Sbjct: 209 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKS 268
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D A++
Sbjct: 269 ------GQNYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQSASL 322
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 323 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 382
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 383 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 442
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P Q +LP L G F
Sbjct: 443 MYSEP-VDQEYLPEELRGVDF 462
>MGI|MGI:1926153 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 MGI:MGI:1926153 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 EMBL:AL645808
eggNOG:COG2256 KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568 EMBL:AB056151
EMBL:AK041886 EMBL:AK050368 EMBL:AK082078 EMBL:AK167570
EMBL:AK170542 EMBL:AK170846 EMBL:BC010482 EMBL:BC058744
EMBL:AF208046 IPI:IPI00459468 IPI:IPI00648000 RefSeq:NP_084491.3
UniGene:Mm.286680 ProteinModelPortal:Q91XU0 SMR:Q91XU0
STRING:Q91XU0 PhosphoSite:Q91XU0 PaxDb:Q91XU0 PRIDE:Q91XU0
Ensembl:ENSMUST00000021832 GeneID:78903 KEGG:mmu:78903
UCSC:uc007pzs.2 UCSC:uc007pzt.2 GeneTree:ENSGT00390000008538
InParanoid:Q91XU0 NextBio:349714 Bgee:Q91XU0 CleanEx:MM_WRNIP1
Genevestigator:Q91XU0 GermOnline:ENSMUSG00000021400 Uniprot:Q91XU0
Length = 660
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 217/441 (49%), Positives = 279/441 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
+ LS S + V + A++ L DGDAR LN L+++ +
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKVFCKKS 460
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 461 GQTY------SPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDF 654
>UNIPROTKB|Q96S55 [details] [associations]
symbol:WRNIP1 "ATPase WRNIP1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
EMBL:CH471087 GO:GO:0000731 GO:GO:0030174 PDB:3VHT PDBsum:3VHT
EMBL:AL139092 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
EMBL:AB056152 EMBL:AK026179 EMBL:AK315471 EMBL:AB209723
EMBL:AK223593 EMBL:BC018923 EMBL:AF218313 IPI:IPI00102997
IPI:IPI00290314 IPI:IPI00642533 IPI:IPI00645459 RefSeq:NP_064520.2
RefSeq:NP_569079.1 UniGene:Hs.236828 PDB:3VHS PDBsum:3VHS
ProteinModelPortal:Q96S55 SMR:Q96S55 IntAct:Q96S55 STRING:Q96S55
PhosphoSite:Q96S55 DMDM:73622085 PaxDb:Q96S55 PRIDE:Q96S55
DNASU:56897 Ensembl:ENST00000380764 Ensembl:ENST00000380769
Ensembl:ENST00000380771 Ensembl:ENST00000380773 GeneID:56897
KEGG:hsa:56897 UCSC:uc003mtz.3 UCSC:uc003mua.3 CTD:56897
GeneCards:GC06P002710 H-InvDB:HIX0005529 HGNC:HGNC:20876
HPA:HPA031752 MIM:608196 neXtProt:NX_Q96S55 PharmGKB:PA134982239
HOVERGEN:HBG062192 InParanoid:Q96S55 OMA:PGHWDAD OrthoDB:EOG457568
PhylomeDB:Q96S55 GenomeRNAi:56897 NextBio:62333 Bgee:Q96S55
CleanEx:HS_WRNIP1 Genevestigator:Q96S55 GermOnline:ENSG00000124535
Uniprot:Q96S55
Length = 665
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 217/441 (49%), Positives = 278/441 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXX 348
+ LS S + + + A++ L DGDAR LN L+++ +
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKS 465
Query: 349 XXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 466 ------GQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKF 547
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDF 659
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 554 (200.1 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
Identities = 108/214 (50%), Positives = 148/214 (69%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ERMRP +++ VGQ+HLL LLR + S+ L S+IFWGPPG+GKTTLA+ I N
Sbjct: 15 NAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A F+ SA+ SG+K++R+ V++A + + + T+LFVDE+HRFNKSQQD+FLP
Sbjct: 75 --ATKSHFIFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G+ IGATTENPSF ++ PLLSRC+VL LNPL +VE +L+ A+ D GL
Sbjct: 133 VERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSALADPERGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
G + + + DA+ F+ GD RVALN LE +A
Sbjct: 189 GASGLAADDDALAFMAEQSGGDGRVALNTLETAA 222
Score = 482 (174.7 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
Identities = 101/196 (51%), Positives = 131/196 (66%)
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
+ L+ +EA Q K L YD+ GEEHYN+ISA KSMRG+D D A+YWLARM+E GE PL+I
Sbjct: 230 IDLESVREAIQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFI 289
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
RR+V ASED+G ADP AL AV+ Q +GMPE +I+AQ YLA APKS + Y
Sbjct: 290 LRRMVILASEDIGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATYLATAPKSNASYA 349
Query: 485 ALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPPSL 542
+ AA +R+S G VPLH+RNAPT+LMK++GY KGY Y D + Q++LP L
Sbjct: 350 GIDAALAEVRKS-GALP-VPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQNYLPERL 407
Query: 543 EGYKFLDWPKSNTTDK 558
EG +F P+ + +K
Sbjct: 408 EGKRFYA-PRGHGYEK 422
>TIGR_CMR|DET_1309 [details] [associations]
symbol:DET_1309 "ATPase, AAA family" species:243164
"Dehalococcoides ethenogenes 195" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 GO:GO:0006310 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009378 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_182021.1
ProteinModelPortal:Q3Z6X8 STRING:Q3Z6X8 GeneID:3229452
KEGG:det:DET1309 PATRIC:21609649
BioCyc:DETH243164:GJNF-1310-MONOMER Uniprot:Q3Z6X8
Length = 457
Score = 518 (187.4 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 105/216 (48%), Positives = 151/216 (69%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP +++ VGQDHL+ LR A+ +++PS+IFWGPPG+GKTTLA I
Sbjct: 21 SPLAARMRPEGLSEFVGQDHLIGEGRALRLAIEGDKIPSLIFWGPPGSGKTTLANIIARR 80
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSAV++GV D+R VE+AR+ R+K +RT+LF+DE+HRFNKSQQD+ LP
Sbjct: 81 LDAH--FSALSAVSAGVADLRRVVEEARE-RLKFERRRTILFIDEIHRFNKSQQDAILPY 137
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++V IGATTENPSF + + LLSR +V LNPL ++ ++LKR+++D + GL
Sbjct: 138 VEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNPLSEKEISLILKRSLEDPS-GL---- 192
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336
G + +A + + S GDAR+ALN LE++ +T
Sbjct: 193 GNYHARLLEEAEKHISSFAQGDARIALNILELAVMT 228
Score = 508 (183.9 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 103/186 (55%), Positives = 132/186 (70%)
Query: 364 LVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLY 423
+V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAA+YWL RMLE GE PLY
Sbjct: 238 VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAVYWLGRMLEAGEDPLY 297
Query: 424 IARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIY 483
IARR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA +PKS S+Y
Sbjct: 298 IARRVIRFATEDVGLADPQGLVVAMAAQQAVHFLGMPEGKLALAEAVIYLAASPKSNSVY 357
Query: 484 RALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPPS 541
A + QK I + VPLHLRNAPT LMK++GYGK Y Y + + KQ LP +
Sbjct: 358 TAYSSVQKEIARN--PQADVPLHLRNAPTGLMKDLGYGKDYKYAHNYQNHFVKQQNLPEA 415
Query: 542 LEGYKF 547
++ +F
Sbjct: 416 IKNSRF 421
>TIGR_CMR|CHY_2201 [details] [associations]
symbol:CHY_2201 "ATPase, AAA family" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0017111 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_361014.1
ProteinModelPortal:Q3AA20 STRING:Q3AA20 GeneID:3726481
KEGG:chy:CHY_2201 PATRIC:21277469 HOGENOM:HOG000017624
BioCyc:CHYD246194:GJCN-2200-MONOMER Uniprot:Q3AA20
Length = 444
Score = 514 (186.0 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
Identities = 99/215 (46%), Positives = 151/215 (70%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP ++++ +GQ+H+L LLR A+ S+RL S+IF+GPPGTGKTTLA+ I ++
Sbjct: 15 APLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTTLARIIAST 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
++ + +AVTSGV ++R+ ++ A++ +RTVLF+DE+HRFNK+QQD+ LP +
Sbjct: 75 TKSGFESI--NAVTSGVGEIREVIKKAKEREKYYGERTVLFIDEIHRFNKAQQDALLPEV 132
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+IV IGATTENP F + PLLSR R+ PL+P + +++RA+ D GL G
Sbjct: 133 EAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEPEHIREIVRRALVDKERGL----G 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336
+VE++ +A++ L + GDAR ALN +E++ +T
Sbjct: 189 EYKVEISEEALDHLVTMAAGDARAALNGIELAVLT 223
Score = 443 (161.0 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
Identities = 89/190 (46%), Positives = 129/190 (67%)
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V +T++ +++ Q K + YD+ G+ HY+ ISA KS+RG+D DAA+Y+LARMLE GE P
Sbjct: 231 VRKITVEIIEQSMQKKAIVYDKEGDNHYDTISAFIKSLRGSDPDAAVYYLARMLEAGEDP 290
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRL+ A+EDVGLADP+ALN AV+ + A F+GMPE + LA+ Y+A APKS +
Sbjct: 291 RFIARRLIVHAAEDVGLADPMALNVAVAAFHALEFVGMPEARLPLAEAAIYIACAPKSNA 350
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+ +A+ A V+R+ G+N +P HLR+A KE+G GKGY Y D P + +LP
Sbjct: 351 VIKAIDRALAVVRK--GENGPIPQHLRDAHYAGAKELGRGKGYKYPHDYPGHFVLEEYLP 408
Query: 540 PSLEGYKFLD 549
+L+G +F +
Sbjct: 409 ENLKGQRFYE 418
>UNIPROTKB|F1P1N4 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] GO:GO:0005739 GO:GO:0005634
GO:GO:0048471 GO:GO:0016887 GO:GO:0000731 GO:GO:0030174
InterPro:IPR021886 Pfam:PF12002 GeneTree:ENSGT00390000008538
EMBL:AC157662 IPI:IPI00573324 Ensembl:ENSGALT00000020967
ArrayExpress:F1P1N4 Uniprot:F1P1N4
Length = 354
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 185/347 (53%), Positives = 231/347 (66%)
Query: 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL 276
++T+LF+DE+HRFNKSQQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L L
Sbjct: 9 RKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKL 68
Query: 277 KPHDVEILLKRAVDDV--------NNGLSKSVGGTR------VEVNHDAIEFLCSNCDGD 322
+E +L RAV + N S + G ++ V + A+ L CDGD
Sbjct: 69 SVEAMEAILLRAVKSLGVQVLGQGNQHSSSATGSSKESSELPVYIEEKALSTLAYLCDGD 128
Query: 323 ARVALNALEISAITAAXXXXXXXXXXXXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYD 382
AR LN L++ A+ A ++GCS L+T + KE Q H+ YD
Sbjct: 129 ARTGLNGLQL-AVQARLAAGKTTLLSF-----TEGCSVNGVLITEEHVKEGLQRSHILYD 182
Query: 383 RAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPL 442
RAGEEHYN ISALHKSMRG+D +A++YWLARMLEGGE PLY+ARRLVRFASED+GLADPL
Sbjct: 183 RAGEEHYNCISALHKSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPL 242
Query: 443 ALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEG 502
AL QAV+ YQ CHF+GMPEC VILAQCV Y A APKSI +YRA G ++ +R G
Sbjct: 243 ALTQAVAAYQGCHFIGMPECEVILAQCVVYFARAPKSIEVYRAYGNVKECLRMHTGPLPP 302
Query: 503 VPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKF 547
VPLHLRNAPT+LMK++GYGKGY Y P +P +Q +LP L+G F
Sbjct: 303 VPLHLRNAPTRLMKDLGYGKGYKYNPMYKEP-VEQDYLPEELKGTDF 348
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 480 (174.0 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 95/191 (49%), Positives = 126/191 (65%)
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
++L+D K+ YDR G+ HY+ ISA HKS+RG+D DA +Y+L RMLE GE PLY+
Sbjct: 298 LSLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRMLESGEDPLYV 357
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
ARR+VR ASED+G+AD L A S + A +GMPE +VILA C LALAPKS+ +YR
Sbjct: 358 ARRMVRIASEDIGIADNSMLPLASSTFTAVQQVGMPEADVILAHCAVALALAPKSVDVYR 417
Query: 485 ALGAAQKVIRE--SVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
+ A + + G+ E +P+H+RNAPT LMK++GY KGY Y PD D Q +LP
Sbjct: 418 SYNAVKSFLSSHPDAGRAE-IPMHIRNAPTNLMKQLGYHKGYKYNPDYKDGLVMQEYLPD 476
Query: 541 SLEGYKFLDWP 551
S++G KF P
Sbjct: 477 SIKGTKFYKLP 487
Score = 433 (157.5 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 99/246 (40%), Positives = 147/246 (59%)
Query: 88 QEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNS 147
Q K E EPSP K TR D PL+ER RP ++++ VGQ+ L+
Sbjct: 60 QSATKFIEPEPSPTKKTKLTRRDT----------RPLAERARPKSLDEYVGQEELVGERG 109
Query: 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVED 207
++R+ + +R S+I WG GTGKTTLA+ I +V +F+ +SA ++ V D R ED
Sbjct: 110 IIRNLIEQDRCNSMILWGSAGTGKTTLARLI--AVTTKSRFIEISATSTTVADCRKIFED 167
Query: 208 ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSR 267
++ + ++T++F+DEVHRFN++QQD FLP++E G + IGATTENPSF L + L+SR
Sbjct: 168 SQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMVEKGLVTLIGATTENPSFRLNSALISR 227
Query: 268 CRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVAL 327
C V L L +V+ +L A + S+ +G + V I+++ + DGDAR+AL
Sbjct: 228 CPVFVLKKLTRDNVKKILNHAC--LLE--SERLGSSMPNVETSIIDYISAITDGDARMAL 283
Query: 328 NALEIS 333
NALE+S
Sbjct: 284 NALEMS 289
Score = 41 (19.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 99 SPLFKRLKTRHDVDSTTALH 118
SP FK+ + +H +++ + H
Sbjct: 40 SPFFKKERYKHHLETNVSSH 59
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 487 (176.5 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 103/210 (49%), Positives = 136/210 (64%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I + +GQ HLL LR A+ + R S++ WGPPGTGKTTLA+ I +
Sbjct: 14 PLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAHYS 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVKD+R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ ++ +A+ D GL G
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALADTERGL----GQ 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEI 332
+ + D + L CDGDAR ALN LE+
Sbjct: 188 RALNMPTDVLNKLAQLCDGDARKALNLLEL 217
Score = 419 (152.6 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 86/170 (50%), Positives = 118/170 (69%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D+ G++ Y+LISA+HKS+RG+ DAA+YW R+LEGG PLY+ARRL+ ASEDVG AD
Sbjct: 244 FDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNAD 303
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P A+ A++ ++ H +G E +AQ + YLA APKS ++Y A AA+ + RE+ GQ
Sbjct: 304 PAAMTIALNAWECFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARET-GQ- 361
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLPPSLEGYKF 547
E VP HLRNAPTKLM E+G+G Y Y D+P+A S + P SL+ +F
Sbjct: 362 EAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFPESLKESQF 411
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 458 (166.3 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 93/187 (49%), Positives = 123/187 (65%)
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
++ D+ K A K L YDRAG++HY+ ISA HKS+RG+D DAA+Y+LARM++ GE PLYI
Sbjct: 327 ISKDEIKRALT-KTLVYDRAGDQHYDTISAFHKSIRGSDPDAALYYLARMIQSGEDPLYI 385
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
ARRL+ ASED+GLAD L A+S + A +G+PE + LA +AL+PKS YR
Sbjct: 386 ARRLIVVASEDIGLADNSMLTLAISTHAAVEKIGLPEARINLAHATVAMALSPKSTRAYR 445
Query: 485 ALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSL 542
L A + E +P+HLRNAPT+LMKE+GYGK Y Y P+ D Q +LP L
Sbjct: 446 GLNNAFAALSEPGIAGLPIPIHLRNAPTRLMKELGYGKEYKYNPNFKDGKVVQDYLPEKL 505
Query: 543 EGYKFLD 549
+ KFL+
Sbjct: 506 QDRKFLE 512
Score = 430 (156.4 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 89/211 (42%), Positives = 133/211 (63%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++V GQ+ L+ P +LR + +R+PS+I WG PGTGKTT+A+ I +
Sbjct: 115 APLAERMRPRTLDEVCGQE-LVGPTGVLRGLIEEDRVPSMILWGGPGTGKTTIARVIASM 173
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV +++ ++GV + + DA+ + ++T++F DE+HRF+KSQQD FL +
Sbjct: 174 VGS--RFVEINSTSTGVAECKKIFADAKSELGLTGRKTIIFCDEIHRFSKSQQDVFLGPV 231
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF + LLSRCR TL+ L D+ +L RA+ S S
Sbjct: 232 ESGQVTLIGATTENPSFKVQNALLSRCRTFTLSKLTDEDIRSILNRALKTEGPNYSPSA- 290
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEI 332
V+ + +++L DGDAR +LN LE+
Sbjct: 291 ----LVDDELLDYLAKFADGDARTSLNLLEL 317
>DICTYBASE|DDB_G0272158 [details] [associations]
symbol:wrnip1 "putative Werner helicase-interacting
protein 1" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008824
Pfam:PF05496 SMART:SM00382 dictyBase:DDB_G0272158 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
GenomeReviews:CM000151_GR GO:GO:0006310 EMBL:AAFI02000008
GO:GO:0009378 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
RefSeq:XP_645251.1 ProteinModelPortal:Q75JU2 STRING:Q75JU2
EnsemblProtists:DDB0305118 GeneID:8618418 KEGG:ddi:DDB_G0272158
InParanoid:Q75JU2 Uniprot:Q75JU2
Length = 876
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 198/434 (45%), Positives = 266/434 (61%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APLSE+MRP ++D +GQ+ LL + +++ S LPS I +GPPG GKTTLA+ IV S
Sbjct: 195 APLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQ-IVAS 253
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +Y LSAV SGVKD+++ ++ AR ++ K+T+LF+DE+HR+NK QQD LP I
Sbjct: 254 KS-NYNINALSAVGSGVKDIKEVIDKARNT-LQFGKKTILFIDEIHRYNKLQQDVLLPAI 311
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L LLSRC+V + L ++E L+KR ++ ++ +
Sbjct: 312 ESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLE-----VTPLLM 366
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXXXXXXXXSDGCSPY 361
R+ ++ DAI+ L DGDARVA+N L++ AI A S G
Sbjct: 367 DRRLIMDEDAIKSLAEIADGDARVAINVLDM-AIKANKEEQTYKERMEEKHSTS-GIVRD 424
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ L T Q L YD+ G+ Y LISALHKS+RG+DA+A YW+ RMLE G +P
Sbjct: 425 IVL-TKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVRGSDANATAYWVIRMLESGCEP 483
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYI RR+VR ASED+GLAD AL A++ YQA HF+GMPEC + QC YLA A KS S
Sbjct: 484 LYIVRRMVRMASEDIGLADNSALPLAIAAYQAVHFVGMPECTNAILQCAVYLANAAKSNS 543
Query: 482 IYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYTP--DDPS-AKQS 536
RE + ++EG VP+HLRNAPTK+MK+ GYG Y Y DD S Q
Sbjct: 544 CDHWYAHT----REYLEKHEGPPVPIHLRNAPTKMMKDWGYGADYQYNHAFDDQSQVTQI 599
Query: 537 FLPPSLEGYKFLDW 550
+LP ++ KF ++
Sbjct: 600 YLPEPIKNEKFFEY 613
>UNIPROTKB|Q607H8 [details] [associations]
symbol:MCA1782 "ATPase, AAA family" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 RefSeq:YP_114220.1
ProteinModelPortal:Q607H8 SMR:Q607H8 GeneID:3102211
KEGG:mca:MCA1782 PATRIC:22607406 Uniprot:Q607H8
Length = 435
Score = 457 (165.9 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 100/213 (46%), Positives = 139/213 (65%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP +++ +GQ HL+ P L ++ RL S+IFWGPPGTGKTTLA+ +
Sbjct: 8 PLADRLRPRTLDEYIGQLHLIEPGRPLYESIRRGRLHSMIFWGPPGTGKTTLARLVARHA 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKS-NKRTVLFVDEVHRFNKSQQDSFLPVI 241
+F+ +SAV SGVK++R+A+ AR ++ K+ +R +LFVDEVHRFNKSQQD+FL +
Sbjct: 68 DA--EFLPVSAVLSGVKEIREAL--ARAVQFKAAGRRAILFVDEVHRFNKSQQDAFLAHV 123
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG++ FIGATTENPSF + + LLSR RV L L D+ ++ RA+ D GL G
Sbjct: 124 EDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLLGVIDRALSDAERGL----G 179
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
G + ++ DGDAR LN LEI+A
Sbjct: 180 GRGLNMSDPVRMAYVRAADGDARRLLNLLEITA 212
Score = 427 (155.4 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 92/166 (55%), Positives = 112/166 (67%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D+ GEE YN ISALHKS+RG+ DAA+YWL RML+GG PLY+ARRLVR ASED+G AD
Sbjct: 239 FDKQGEEFYNQISALHKSVRGSSPDAALYWLCRMLDGGCDPLYLARRLVRIASEDIGNAD 298
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P AL ++ + A LG PE + LAQ V YLA+APKS ++Y A AA+ S G
Sbjct: 299 PKALELCLNAWNAQERLGSPEGELALAQAVVYLAVAPKSNAVYEAYKAARADAARS-GSL 357
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK---QSFLPPSLE 543
VPLHLRNAPT LMK + YGKGY Y D P A +++ P LE
Sbjct: 358 P-VPLHLRNAPTGLMKGLDYGKGYRYAHDYPDAYVPGENYFPEGLE 402
>UNIPROTKB|P0AAZ4 [details] [associations]
symbol:rarA species:83333 "Escherichia coli K-12"
[GO:0030894 "replisome" evidence=IDA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006261 GO:GO:0006310 GO:GO:0017111
GO:GO:0030894 EMBL:D49398 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
EMBL:X05017 PIR:C64828 RefSeq:NP_415412.1 RefSeq:YP_489164.1
ProteinModelPortal:P0AAZ4 SMR:P0AAZ4 DIP:DIP-48151N IntAct:P0AAZ4
MINT:MINT-1224512 PRIDE:P0AAZ4 EnsemblBacteria:EBESCT00000001727
EnsemblBacteria:EBESCT00000016690 GeneID:12930363 GeneID:945505
KEGG:ecj:Y75_p0864 KEGG:eco:b0892 PATRIC:32116995 EchoBASE:EB2553
EcoGene:EG12690 OMA:TTYYLND BioCyc:EcoCyc:EG12690-MONOMER
BioCyc:ECOL316407:JW0875-MONOMER Genevestigator:P0AAZ4
Uniprot:P0AAZ4
Length = 447
Score = 492 (178.3 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 107/212 (50%), Positives = 139/212 (65%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+ + + + +GDAR ALN LE+ A
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMA 219
Score = 374 (136.7 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 78/165 (47%), Positives = 106/165 (64%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PLY+ARR + ASEDVG AD
Sbjct: 248 FDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNAD 307
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P A+ A++ + +G E +AQ + YLA APKS ++Y A AA RE +
Sbjct: 308 PRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYD 367
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLPPSL 542
VP+HLRNAPTKLMKE+GYG+ Y Y D+ +A + + PP +
Sbjct: 368 --VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEI 410
>CGD|CAL0001352 [details] [associations]
symbol:orf19.3019 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=IEA]
[GO:0006282 "regulation of DNA repair" evidence=IEA] [GO:0008047
"enzyme activator activity" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
CGD:CAL0001352 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0017111 eggNOG:COG2256 KO:K07478 InterPro:IPR021886
Pfam:PF12002 RefSeq:XP_721246.1 RefSeq:XP_721517.1
ProteinModelPortal:Q5AI33 STRING:Q5AI33 GeneID:3636898
GeneID:3637179 KEGG:cal:CaO19.10537 KEGG:cal:CaO19.3019
Uniprot:Q5AI33
Length = 678
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 193/481 (40%), Positives = 282/481 (58%)
Query: 76 QTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNIND 135
Q KP AN ++E + +E S ++ K ++ ++ PL+ R+RP +++D
Sbjct: 129 QEKP---LANDIEETKSQKE---SKFLQKAKEIKELKRQASI-----PLAHRLRPKSLDD 177
Query: 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195
GQ+ L+ N LR+ + ++ +PS + WG PG GKT+LA+ I + S KFV LS +
Sbjct: 178 FFGQEKLVGENGALRNIIQADIIPSFLLWGVPGIGKTSLARIIAKTT--SCKFVELSGID 235
Query: 196 SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTEN 255
S K +++ A + S +RT+LF+DE+HRFNK+ QD LPVIE G++ IGATTEN
Sbjct: 236 SNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEKGTLTVIGATTEN 295
Query: 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTR-VEVNHDAIEF 314
PSF+L LLSR + PL + +L RA+ +VN + K++ G + + DA +
Sbjct: 296 PSFNLNNALLSRMHTFVMEPLTVDSLIKILTRALFEVNR-VRKNLYGLHYISLQKDAYHY 354
Query: 315 LCSNCDGDARVALNALE-ISAITAAXXXXXXXXXXXXXXXXSDGCSPYVALVTLDDAKEA 373
+ C GD+RVALN LE I+A +A G V V+ D K
Sbjct: 355 IAELCMGDSRVALNILETINAYLSADKFKSTVNADDEQTK-KQG----VIKVSADLLKPL 409
Query: 374 FQCK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRF 431
+ + H YDR G+ HY++ISA HKS+RG+D +AA+++L +ML GGE PL+I RR++
Sbjct: 410 MKSRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNAAMFYLVKMLSGGEDPLFIMRRMIVI 469
Query: 432 ASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQK 491
ASED+GL D L A++ +A F+GMPE +ILA C LALAPKS YRAL AQ
Sbjct: 470 ASEDIGLRDSSCLPFAIAAKEALEFVGMPEGEIILAHCANKLALAPKSTKSYRALRTAQN 529
Query: 492 VIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPPSLEGYKFL 548
+I+E+ + VPLHLRNAPTKLMK++G+G Y Y P+ + K Q + P ++ K L
Sbjct: 530 IIKENPDLTKLPVPLHLRNAPTKLMKDLGFGDKYKYNPNYENGKVRQGYFPDGMDPIKLL 589
Query: 549 D 549
+
Sbjct: 590 E 590
>UNIPROTKB|Q9KSZ8 [details] [associations]
symbol:VC_1108 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0017111 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 PIR:G82241
RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8 SMR:Q9KSZ8
DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108 PATRIC:20081310
Uniprot:Q9KSZ8
Length = 449
Score = 483 (175.1 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 104/210 (49%), Positives = 137/210 (65%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ H+L P LR A+ + + S+I WGPPGTGKTTLA+ N
Sbjct: 16 PLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYA 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ V SAVTSGVK++R A+E AR+ ++ S +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 76 NAEVERV--SAVTSGVKEIRAAIEKARENKL-SGRRTILFVDEVHRFNKSQQDAFLPHIE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ FIGATTENPSF L LLSR RV L L ++ L +A+ D GL K V
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGLGK-VAA 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEI 332
+ + ++ L +GDAR++LN LE+
Sbjct: 192 VFAD---NVLDRLAELVNGDARMSLNYLEL 218
Score = 372 (136.0 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 78/170 (45%), Positives = 110/170 (64%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D G+ Y+LISA+HKS+RG+D DAA+YW ARM+ G PLYIARRL+ ASEDVG AD
Sbjct: 249 FDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNAD 308
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P + A++ + +G E +AQ + YLA APKS ++Y A A ++ +
Sbjct: 309 PRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAH-NLPEF 367
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEGYKF 547
E VP HLRNAPT+LMK++GYG+ Y Y D+P +A + + PP + G ++
Sbjct: 368 E-VPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTRY 416
>TIGR_CMR|VC_1108 [details] [associations]
symbol:VC_1108 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HSSP:Q56313 PIR:G82241 RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8
SMR:Q9KSZ8 DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108
PATRIC:20081310 Uniprot:Q9KSZ8
Length = 449
Score = 483 (175.1 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 104/210 (49%), Positives = 137/210 (65%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ H+L P LR A+ + + S+I WGPPGTGKTTLA+ N
Sbjct: 16 PLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYA 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ V SAVTSGVK++R A+E AR+ ++ S +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 76 NAEVERV--SAVTSGVKEIRAAIEKARENKL-SGRRTILFVDEVHRFNKSQQDAFLPHIE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ FIGATTENPSF L LLSR RV L L ++ L +A+ D GL K V
Sbjct: 133 DGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGLGK-VAA 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEI 332
+ + ++ L +GDAR++LN LE+
Sbjct: 192 VFAD---NVLDRLAELVNGDARMSLNYLEL 218
Score = 372 (136.0 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 78/170 (45%), Positives = 110/170 (64%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D G+ Y+LISA+HKS+RG+D DAA+YW ARM+ G PLYIARRL+ ASEDVG AD
Sbjct: 249 FDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNAD 308
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P + A++ + +G E +AQ + YLA APKS ++Y A A ++ +
Sbjct: 309 PRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAH-NLPEF 367
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEGYKF 547
E VP HLRNAPT+LMK++GYG+ Y Y D+P +A + + PP + G ++
Sbjct: 368 E-VPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTRY 416
>UNIPROTKB|P39918 [details] [associations]
symbol:rarA "Replication-associated recombination protein
A" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 EMBL:X75627
PIR:S43134 RefSeq:NP_820184.4 ProteinModelPortal:P39918 SMR:P39918
GeneID:1209093 KEGG:cbu:CBU_1189 PATRIC:17931123 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
BioCyc:CBUR227377:GJ7S-1178-MONOMER InterPro:IPR021886 Pfam:PF12002
Uniprot:P39918
Length = 440
Score = 429 (156.1 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 99/212 (46%), Positives = 127/212 (59%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + + VGQ HLL + L A+ +L S+I WGPPG+GKTTLA+ I
Sbjct: 9 PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQKA 68
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAV +GVKD+RD VE A + + + T+LFVDEVH FNKSQQD+FLP +E
Sbjct: 69 GARVESI--SAVLAGVKDIRDVVERAERHK---GQATILFVDEVHGFNKSQQDAFLPHVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF L LLSR RV L L D+ +L+ A+ + GL K
Sbjct: 124 KGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERGLGKKALE 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+ ++F DGDAR LN LEI A
Sbjct: 184 IPEPLRRRIVQF----ADGDARQCLNLLEIIA 211
Score = 412 (150.1 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 84/170 (49%), Positives = 116/170 (68%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D+ GE Y+ ISALHKS+RG+D DA++YWL+R+L+GG P Y+ARR+VR ASED+G AD
Sbjct: 239 FDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPFYVARRVVRMASEDIGNAD 298
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P AL A+ ++ LG PE + +AQ V Y A A KS ++Y+A AA + ++ S G
Sbjct: 299 PRALQLALDAWETFERLGTPEGELAIAQAVVYCACAAKSNAVYKAFNAASREVK-STGSL 357
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEGYKF 547
E VPL+LRNAPT+LMK + YGK Y Y D+ +A +LP SL G ++
Sbjct: 358 E-VPLYLRNAPTRLMKSLDYGKDYRYAHDESDGFAAGVDYLPESLIGRRY 406
>TIGR_CMR|CBU_1189 [details] [associations]
symbol:CBU_1189 "ATPase, AAA family domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0017111 EMBL:X75627 PIR:S43134 RefSeq:NP_820184.4
ProteinModelPortal:P39918 SMR:P39918 GeneID:1209093
KEGG:cbu:CBU_1189 PATRIC:17931123 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
BioCyc:CBUR227377:GJ7S-1178-MONOMER InterPro:IPR021886 Pfam:PF12002
Uniprot:P39918
Length = 440
Score = 429 (156.1 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 99/212 (46%), Positives = 127/212 (59%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + + VGQ HLL + L A+ +L S+I WGPPG+GKTTLA+ I
Sbjct: 9 PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQKA 68
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAV +GVKD+RD VE A + + + T+LFVDEVH FNKSQQD+FLP +E
Sbjct: 69 GARVESI--SAVLAGVKDIRDVVERAERHK---GQATILFVDEVHGFNKSQQDAFLPHVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF L LLSR RV L L D+ +L+ A+ + GL K
Sbjct: 124 KGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERGLGKKALE 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+ ++F DGDAR LN LEI A
Sbjct: 184 IPEPLRRRIVQF----ADGDARQCLNLLEIIA 211
Score = 412 (150.1 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 84/170 (49%), Positives = 116/170 (68%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
+D+ GE Y+ ISALHKS+RG+D DA++YWL+R+L+GG P Y+ARR+VR ASED+G AD
Sbjct: 239 FDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPFYVARRVVRMASEDIGNAD 298
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P AL A+ ++ LG PE + +AQ V Y A A KS ++Y+A AA + ++ S G
Sbjct: 299 PRALQLALDAWETFERLGTPEGELAIAQAVVYCACAAKSNAVYKAFNAASREVK-STGSL 357
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEGYKF 547
E VPL+LRNAPT+LMK + YGK Y Y D+ +A +LP SL G ++
Sbjct: 358 E-VPLYLRNAPTRLMKSLDYGKDYRYAHDESDGFAAGVDYLPESLIGRRY 406
>TIGR_CMR|SPO_0515 [details] [associations]
symbol:SPO_0515 "ATPase, AAA family" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006281
GO:GO:0006310 GO:GO:0009378 HOGENOM:HOG000017623 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
RefSeq:YP_165777.1 ProteinModelPortal:Q5LW28 GeneID:3194720
KEGG:sil:SPO0515 PATRIC:23374293 Uniprot:Q5LW28
Length = 438
Score = 422 (153.6 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 86/165 (52%), Positives = 112/165 (67%)
Query: 381 YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLAD 440
YD++G+EHYNLISALHKS+RG+D DAA+YWLARML GGE P Y+ARR+ R A ED+GLAD
Sbjct: 243 YDKSGDEHYNLISALHKSVRGSDPDAALYWLARMLTGGEDPRYLARRITRMAVEDIGLAD 302
Query: 441 PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQN 500
P A + + ++ LG PE + LAQ + YLALAPKS Y AA ++ ++S G +
Sbjct: 303 PQAQSVCLHAWEIYERLGSPEGELALAQAIVYLALAPKSNGAYVGYKAAMRLAKQS-G-S 360
Query: 501 EGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLE 543
P H+ NAPT LMK+ GYG GY Y D D + Q++ P +E
Sbjct: 361 APPPKHILNAPTGLMKDQGYGAGYAYDHDAEDGFSGQNYFPDGME 405
Score = 414 (150.8 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 91/212 (42%), Positives = 130/212 (61%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL++R+RP ++ +V+GQ +L P + L + S L S++FWGPPG GKTT+A+ +
Sbjct: 17 PPRPLADRLRPQSLGEVIGQQQVLGPEAPLGVMLASGSLSSLVFWGPPGVGKTTIARLLA 76
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ FV +SA+ +GV D++ E AR +R + + T+LFVDE+HRFNK+QQD FLP
Sbjct: 77 QETDLH--FVQISAIFTGVPDLKKVFEAAR-IRRGNGQGTLLFVDEIHRFNKAQQDGFLP 133
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+EDG+I+ +GATTENPSF L LLSR +VL L L D+E L RA +++ L
Sbjct: 134 HMEDGTILLVGATTENPSFELNAALLSRAQVLVLERLSAEDLEHLTARAERELDRELP-- 191
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ +A L DGD R LN +E
Sbjct: 192 -------LTPEARLALQEMADGDGRALLNLIE 216
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 182/427 (42%), Positives = 256/427 (59%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP + D VGQ H+L +S L ++ S+IFWGPPG+GKTTLA+ I
Sbjct: 58 PLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGHCHSLIFWGPPGSGKTTLAEIIAQHA 117
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK---SNKR-TVLFVDEVHRFNKSQQDSFL 238
+ V SAVTSG+K++R A+E A KLR + +NKR TVLFVDEVHRFNKSQQD+FL
Sbjct: 118 NAEIERV--SAVTSGIKEIRSAIEKA-KLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFL 174
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P IEDG+I+FIGATTENP+F L LLSR R+ TL L D+ +L+RA+ L +
Sbjct: 175 PHIEDGTIIFIGATTENPAFELNQALLSRARLYTLKKLTRDDLAQVLQRAIS-----LCE 229
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXXXXXXXXSDGC 358
+ ++++ DA + L + DGDAR LN LE G
Sbjct: 230 AEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLE----NCLDSSVTTHENKQDDQHGEQGV 285
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
S + VT++ + K YD+ G+ Y+LISA HKS+RG+ DAA+YW AR+L G
Sbjct: 286 SGDIKTVTVELIAQVAGSKIALYDKGGDAFYDLISAFHKSVRGSSPDAALYWYARILTAG 345
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
LY+ARRL+ ASED+G ADP A+ A++ + H +G E +AQ Y+ALAPK
Sbjct: 346 GDALYVARRLLAIASEDIGNADPRAMQLAINAWDTFHRVGPSEGERAIAQATVYMALAPK 405
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQ 535
S ++Y+A A K++ + + VPLHL+NA + + K++G+G Y Y D+ +A +
Sbjct: 406 SNAVYQAFNKA-KILAQQTCDLD-VPLHLKNATSSITKDLGHGSEYRYAHDEVNAFAAGE 463
Query: 536 SFLPPSL 542
++ P +L
Sbjct: 464 NYFPEAL 470
>SGD|S000005162 [details] [associations]
symbol:MGS1 "Protein with DNA-dependent ATPase and ssDNA
annealing activities" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006952 "defense response" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008047 "enzyme activator activity" evidence=IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=IGI] [GO:0043130 "ubiquitin
binding" evidence=ISS] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000767 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PRINTS:PR00364 PROSITE:PS00674
SMART:SM00382 SMART:SM00734 SGD:S000005162 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006952 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006947 GO:GO:0008047
GO:GO:0043130 GO:GO:0000733 GO:GO:0006282 GO:GO:0043142
GO:GO:0033567 EMBL:X78898 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 OMA:PGHWDAD
GeneTree:ENSGT00390000008538 OrthoDB:EOG4Z924S EMBL:Z71493
EMBL:Z71494 EMBL:AY693190 PIR:S63176 RefSeq:NP_014181.1
ProteinModelPortal:P40151 SMR:P40151 DIP:DIP-1638N IntAct:P40151
MINT:MINT-392746 STRING:P40151 PaxDb:P40151 EnsemblFungi:YNL218W
GeneID:855503 KEGG:sce:YNL218W CYGD:YNL218w NextBio:979505
Genevestigator:P40151 GermOnline:YNL218W Uniprot:P40151
Length = 587
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 181/474 (38%), Positives = 267/474 (56%)
Query: 100 PLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSP-NSLLRSAVCSNRL 158
P R + +D +S + H PLSE++RP + D VGQ H+LS N L + +
Sbjct: 111 PASSRDQLHNDYESRWLQKISHLPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTI 170
Query: 159 PSIIFWGPPGTGKTTLAKAIVNSVAVS---------YKFVCLSAVTSGVKDVRDAVEDAR 209
PS+I WGPPG GKT+LA+ + + S Y + SA + +++R E ++
Sbjct: 171 PSMILWGPPGVGKTSLARLLTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSK 230
Query: 210 KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCR 269
K + +RTVLF+DE+HRFNK QQD LP +E+G I+ IGATTENPSF L L+SRC
Sbjct: 231 KEYQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCL 290
Query: 270 VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTR--VEVNHDAIEFLCSNCDGDARVAL 327
+ L L +++ I+L R + +N K V ++++ +E++ GD R AL
Sbjct: 291 IFVLEKLNVNELCIVLSRGIALLNK-CRKQVWNIENPLKLSRSILEYVVDLSVGDTRRAL 349
Query: 328 NALEISAITAAXXXXXXXXXXXXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEE 387
N LE+ ++ D V + +++ + YD G+
Sbjct: 350 NMLEMIEVSTRERKADEEELSI-----DD-----VRDIIKNNSSNGL---NTYYDPKGDN 396
Query: 388 HYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQA 447
HY+ ISA HKS+RG D +A++Y+LARML+GGE PLY+ARR++R ASED+GL D L A
Sbjct: 397 HYDTISAFHKSIRGGDENASLYYLARMLQGGEDPLYVARRMIRIASEDIGLRDSSLLPLA 456
Query: 448 VSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRE---SVGQNEGVP 504
V+ + A +G+PE ++ LAQC LA APKS+ +YRA + ++ E S+ +E +P
Sbjct: 457 VAAHDAVMKVGLPEADLALAQCCVALARAPKSVELYRAWKKLRAMMSENMYSLASSE-IP 515
Query: 505 LHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP-------PSLEGYKFLD 549
+H+RNAPTKLM+E+GY KGY Y PD + +Q + P P+ KFLD
Sbjct: 516 MHIRNAPTKLMEELGYHKGYKYNPDYIEGKVQQDYFPKEVLEKCPNKTDLKFLD 569
>TIGR_CMR|BA_4628 [details] [associations]
symbol:BA_4628 "ATPase, AAA family" species:198094
"Bacillus anthracis str. Ames" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017111 KO:K07478
ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HOGENOM:HOG000017624 OMA:RLLVIAY RefSeq:NP_846846.1
RefSeq:YP_021276.1 RefSeq:YP_030542.1 ProteinModelPortal:Q81LJ0
SMR:Q81LJ0 DNASU:1085339 EnsemblBacteria:EBBACT00000011786
EnsemblBacteria:EBBACT00000016240 EnsemblBacteria:EBBACT00000022391
GeneID:1085339 GeneID:2814872 GeneID:2851063 KEGG:ban:BA_4628
KEGG:bar:GBAA_4628 KEGG:bat:BAS4294
BioCyc:BANT260799:GJAJ-4350-MONOMER
BioCyc:BANT261594:GJ7F-4499-MONOMER Uniprot:Q81LJ0
Length = 428
Score = 393 (143.4 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 89/216 (41%), Positives = 128/216 (59%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP NI +V+GQ HL+ +L V +N S+I +GPPGTGKT++A AI S
Sbjct: 4 PLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGST 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ L+AVT KD+ V++A K ++ VL +DEVHR +K++QD LP +E
Sbjct: 64 GTPFRL--LNAVTHNKKDMEVVVQEA-----KMHRHLVLILDEVHRLDKAKQDFLLPHLE 116
Query: 243 DGSIVFIGATTENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
G + IGATT NP FH I + SRC++ L+ L D+ I LKRA++D GL G
Sbjct: 117 SGLLTLIGATTSNP-FHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKEKGL----G 171
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
V V +A+ + GD R A NALE++ +++
Sbjct: 172 EYDVTVTPEALHHFANASGGDMRSAYNALELAVLSS 207
Score = 336 (123.3 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 76/198 (38%), Positives = 120/198 (60%)
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A +TL+ A+E Q K +D+ G+ HY+++SA KS+RG+D +AA+++LAR++E G+
Sbjct: 215 AEITLEIAEECLQKKSFVHDKGGDAHYDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQS 274
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
I RRL+ A ED+GLA P A + ++ ++ +G PE + LA V L L+PKS S
Sbjct: 275 -IGRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANAVIELCLSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+AL AA +R GQ +P HL+++ K + +G G GY+Y D P+ +Q +LP
Sbjct: 334 YKALDAALHDLRN--GQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPD 391
Query: 541 SLEGYKFLDWPKSNTTDK 558
++ ++ PK TT K
Sbjct: 392 KIKNKQYYK-PK--TTGK 406
>UNIPROTKB|Q71ZF6 [details] [associations]
symbol:LMOf2365_1533 "ATPase, AAA family domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR008824 Pfam:PF05496 SMART:SM00382 GO:GO:0000166
GO:GO:0006281 GO:GO:0006310 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0009378 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HOGENOM:HOG000017624 OMA:RLLVIAY
RefSeq:YP_014131.1 ProteinModelPortal:Q71ZF6 SMR:Q71ZF6
STRING:Q71ZF6 DNASU:2797899 GeneID:2797899 KEGG:lmf:LMOf2365_1533
PATRIC:20324305 Uniprot:Q71ZF6
Length = 427
Score = 375 (137.1 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 83/215 (38%), Positives = 128/215 (59%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++++VGQ HL+ + ++ V + +L S+I +GPPG GKT++A AI S
Sbjct: 5 PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGST 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
Y F L+AVT+ KD+ +A K + +L +DEVHR +K++QD LP++E
Sbjct: 65 --KYAFRTLNAVTNNKKDMEVVAAEA-----KMSGTVILLLDEVHRLDKAKQDFLLPLLE 117
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATT NP + + SR ++ L PL D+ I + RA+ D GL G
Sbjct: 118 SGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITMDRALSDKERGL----GN 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
VE++ A + + +GD R ALNALE++ I++
Sbjct: 174 YDVEIDEVAKKHFATASNGDVRSALNALELAVISS 208
Score = 291 (107.5 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 71/190 (37%), Positives = 110/190 (57%)
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
+TLD A+E Q K LA+D+ G+ HY+++SA KS+RG+D +AA++++ R++E G+ + I
Sbjct: 218 ITLDVAEECLQKKSLAHDKDGDAHYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDL-VSI 276
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
+RR++ A ED+GLA P A ++ Q +G PE + LA V L L+PKS S
Sbjct: 277 SRRMLVMAYEDIGLASPQAGAHTLAAIQTAEKVGFPEARIPLANAVIELCLSPKSNSAIM 336
Query: 485 ALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSL 542
A+ AA IR+ G++ VP HLR+ +++G Y Y D+ Q +LP L
Sbjct: 337 AIDAALADIRQ--GKSGEVPDHLRDGHYSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRL 394
Query: 543 EGYKFLDWPK 552
+ K PK
Sbjct: 395 KN-KLYYAPK 403
>TIGR_CMR|CJE_0191 [details] [associations]
symbol:CJE_0191 "ATPase, AAA family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496
SMART:SM00382 GO:GO:0000166 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0006310 GO:GO:0009378
eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 HOGENOM:HOG000017624 RefSeq:YP_178215.1
ProteinModelPortal:Q5HWX0 STRING:Q5HWX0 GeneID:3230954
KEGG:cjr:CJE0191 PATRIC:20042091 OMA:RLLVIAY
BioCyc:CJEJ195099:GJC0-196-MONOMER Uniprot:Q5HWX0
Length = 393
Score = 288 (106.4 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 69/161 (42%), Positives = 98/161 (60%)
Query: 386 EEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALN 445
+ HY L SA+ KS+RG+D DAAIY+LAR+++ GE +IARRLV F+SED+G ADP ALN
Sbjct: 219 DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNALN 278
Query: 446 QAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPL 505
AVS +A +G PE +ILAQCV YLA KS + Y+A+ A ++ + +P
Sbjct: 279 LAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALE--IPN 336
Query: 506 HLRNAPTKLMKEIGYGKGYIYTPDDPS-AKQSFLPPSLEGY 545
+L N + K+ Y+Y D +Q +L +L+ Y
Sbjct: 337 YLNNNHQE--KQ-----NYLYPHDFGGWVEQKYLSKNLKFY 370
Score = 211 (79.3 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 60/209 (28%), Positives = 106/209 (50%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183
L+ RP N +D++GQ L+ + + +LP IF+G G+GKTT A+ +
Sbjct: 3 LALTFRPENFDDILGQYELIE---IFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFG 59
Query: 184 VS-YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ Y+F ++++R +++ + S + ++F+DE+HR +K+QQ+ L +E
Sbjct: 60 LDFYEF---DGGNFKLEELRKILDNYKN----SLYKPLIFIDEIHRLSKTQQEMLLIPME 112
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+ ++ IGA+TENP F L + + SR + L ++E LL R + + + K
Sbjct: 113 NYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQEKMKFSIDK---- 168
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALE 331
+A +FL + D AR LN LE
Sbjct: 169 -------EAKDFLLKSAD--ARAMLNLLE 188
>CGD|CAL0000272 [details] [associations]
symbol:orf19.3601 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 CGD:CAL0000272 GO:GO:0005524 GO:GO:0017111
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG2256
RefSeq:XP_714445.1 RefSeq:XP_714494.1 ProteinModelPortal:Q59Y48
GeneID:3643833 GeneID:3643882 KEGG:cal:CaO19.11084
KEGG:cal:CaO19.3601 Uniprot:Q59Y48
Length = 547
Score = 302 (111.4 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 80/227 (35%), Positives = 116/227 (51%)
Query: 124 LSERMRPVNINDVVGQDHLLSP-NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
LSE +RP VGQDHL++P + +R+ + LPS+IF GP G GKTTLA I S
Sbjct: 26 LSEAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTTLASVI--SY 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNK-------RTVLFVDEVHRFNKSQQD 235
F+ LSA T D++ + + K+ K + VLF+DE+HR K QQD
Sbjct: 84 ECGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-- 293
LP +E+G IV IGATT P+ + +LSRC+V L L +++ +L +A+ N
Sbjct: 144 WLLPYLENGEIVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAITFQNLK 203
Query: 294 ----NGLSKSVGGTRVEVNHDAIE----FLCSNCDGDARVALNALEI 332
L V E D ++ + GD R+A+N +E+
Sbjct: 204 RKHLYQLGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIEL 250
>UNIPROTKB|Q59Y48 [details] [associations]
symbol:CaO19.11084 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 CGD:CAL0000272 GO:GO:0005524 GO:GO:0017111
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG2256
RefSeq:XP_714445.1 RefSeq:XP_714494.1 ProteinModelPortal:Q59Y48
GeneID:3643833 GeneID:3643882 KEGG:cal:CaO19.11084
KEGG:cal:CaO19.3601 Uniprot:Q59Y48
Length = 547
Score = 302 (111.4 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 80/227 (35%), Positives = 116/227 (51%)
Query: 124 LSERMRPVNINDVVGQDHLLSP-NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
LSE +RP VGQDHL++P + +R+ + LPS+IF GP G GKTTLA I S
Sbjct: 26 LSEAIRPTTFEQYVGQDHLINPIDGAIRNFIKLGYLPSMIFTGPSGIGKTTLASVI--SY 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNK-------RTVLFVDEVHRFNKSQQD 235
F+ LSA T D++ + + K+ K + VLF+DE+HR K QQD
Sbjct: 84 ECGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFIDELHRLTKIQQD 143
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-- 293
LP +E+G IV IGATT P+ + +LSRC+V L L +++ +L +A+ N
Sbjct: 144 WLLPYLENGEIVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIKKVLCQAITFQNLK 203
Query: 294 ----NGLSKSVGGTRVEVNHDAIE----FLCSNCDGDARVALNALEI 332
L V E D ++ + GD R+A+N +E+
Sbjct: 204 RKHLYQLGAIVYDDDDEEQGDGVDECFDLILDRAQGDCRIAINLIEL 250
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 188 (71.2 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 68/227 (29%), Positives = 105/227 (46%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
+TT L P P E+ RP+ I D+VG + +S L S LP+II GPPGTGKT
Sbjct: 12 NTTNLD-PLLPWVEKYRPILIKDIVGNEETVSR---LESISKDGNLPNIIISGPPGTGKT 67
Query: 173 TLAKAIVNSV-AVSYKFVC--LSAVTSGVKDV-RDAVED--ARKLRVKSNKRTVLFVDEV 226
+ + ++ +YK L+A DV RD ++ +K+ + + + ++ +DEV
Sbjct: 68 SSILCLARALLGANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEV 127
Query: 227 HRFNKSQQDSFLPVIE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284
Q + ++E G+ F A N S +I P+ SRC VL L D +IL
Sbjct: 128 DSMTSGAQQALRRIMEIYSGTTRFAFAC--NQSTKIIEPIQSRCAVLRFTRLS--DSQIL 183
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ L + V +V D + + +GD R ALN L+
Sbjct: 184 TR---------LREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQ 221
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 185 (70.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 64/226 (28%), Positives = 109/226 (48%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
+TTA +P E+ RP+ +N++VG + +S L +P+II GPPGTGKT
Sbjct: 60 TTTAYELPWV---EKYRPLKLNEIVGNEETVSR---LEVFAREGNVPNIIIAGPPGTGKT 113
Query: 173 T----LAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFVDE 225
T LA+A++ A+ + L+A G+ VR+ ++ +K+ + + ++ +DE
Sbjct: 114 TSILCLARALLGP-AMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDE 172
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
Q + +E S A N S +I P+ SRC VL + L+ D +I++
Sbjct: 173 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLR--DEQIMM 230
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ L++ V + V +D +E + GD R ALN L+
Sbjct: 231 R---------LTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 267
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 180 (68.4 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 66/228 (28%), Positives = 105/228 (46%)
Query: 111 VDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTG 170
V S TA H P E+ RP+ +N++VG + +S L +P+II GPPGTG
Sbjct: 21 VPSKTAGHY-ELPWVEKYRPLKLNEIVGNEDTVSR---LEVFAREGNVPNIIIAGPPGTG 76
Query: 171 KTT----LAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFV 223
KTT LA+A++ A+ + L+A G+ VR+ ++ +K+ + + ++ +
Sbjct: 77 KTTSILCLARALLGP-ALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIIL 135
Query: 224 DEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEI 283
DE Q + +E S A N S +I P+ SRC VL L D ++
Sbjct: 136 DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT--DAQV 193
Query: 284 LLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L + + N + K +V D +E + GD R ALN L+
Sbjct: 194 LTR-----LMNVIEKE----KVPYTDDGLEAIIFTAQGDMRQALNNLQ 232
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 180 (68.4 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 64/216 (29%), Positives = 100/216 (46%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RPV +N++VG + +S L +P+II GPPGTGKTT LA+A+
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 93
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ A+ + L+A G+ VR+ ++ +K+ + + ++ +DE Q
Sbjct: 94 LGP-ALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 152
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E S A N S +I P+ SRC VL L D +IL + + N
Sbjct: 153 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT--DAQILTR-----LMNV 205
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ K RV D +E + GD R ALN L+
Sbjct: 206 IEKE----RVPYTDDGLEAIIFTAQGDMRQALNNLQ 237
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 178 (67.7 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 66/228 (28%), Positives = 104/228 (45%)
Query: 111 VDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTG 170
V S T H P E+ RPV +N++VG + +S L +P+II GPPGTG
Sbjct: 21 VPSKTTGHY-ELPWVEKYRPVKLNEIVGNEDTVSR---LEVFAREGNVPNIIIAGPPGTG 76
Query: 171 KTT----LAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFV 223
KTT LA+A++ A+ + L+A G+ VR+ ++ +K+ + + ++ +
Sbjct: 77 KTTSILCLARALLGP-ALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIIL 135
Query: 224 DEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEI 283
DE Q + +E S A N S +I P+ SRC VL L D ++
Sbjct: 136 DEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT--DAQV 193
Query: 284 LLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L + + N + K +V D +E + GD R ALN L+
Sbjct: 194 LSR-----LMNVIEKE----KVPYTDDGLEAIIFTAQGDMRQALNNLQ 232
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 176 (67.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 62/216 (28%), Positives = 100/216 (46%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RPV +N++VG + +S L +P+II GPPGTGKTT LA+A+
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 91
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ A+ + L+A G+ VR+ ++ +K+ + + ++ +DE Q
Sbjct: 92 LGP-ALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 150
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E S A N S +I P+ SRC VL L D++IL +
Sbjct: 151 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT--DMQILAR--------- 199
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L + +V+ D +E + GD R ALN L+
Sbjct: 200 LLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQ 235
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 166 (63.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 60/215 (27%), Positives = 96/215 (44%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP + D+VG + +S L+ +P++I GPPGTGKTT A+ + +
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSR---LQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
+YK L S G+ VR+ ++ +K+ + + V+ +DE Q +
Sbjct: 73 LGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
IE S A N S +I P+ SRC ++ + L D +IL + V
Sbjct: 133 LRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLS--DQQILGRLLV------- 183
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
V +V + +E + DGD R ALN L+
Sbjct: 184 --VVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 216
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 60/225 (26%), Positives = 108/225 (48%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
ST + P E+ RP +++V GQ+ +++ +R V +LP ++F+GPPGTGKT
Sbjct: 4 STEKRSKENLPWVEKYRPETLDEVYGQNEVITT---VRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 173 TLAKAIVNSV-AVSYKFVCLSAVTS---GVKDVRDAVEDARKLR-VKSNKRTVLFVDEVH 227
+ A+ + +Y + L S G+ VR+ ++D R + S ++ +DE
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEAD 120
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITP-LLSRCRVLTLNPLKPHDVEILLK 286
+ Q++ VIE + N + H +TP LLSRC PL P + ++
Sbjct: 121 AMTNAAQNALRRVIERYTKNTRFCVLANYA-HKLTPALLSRCTRFRFQPL-PQEA---IE 175
Query: 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
R + +V + +++++ +A + L +GD R LN L+
Sbjct: 176 RRIANV-------LVHEKLKLSPNAEKALIELSNGDMRRVLNVLQ 213
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 166 (63.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 58/215 (26%), Positives = 98/215 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP N+ DVV ++S L + SNR+P ++F+GPPGTGKT+ A +
Sbjct: 24 PWVEKYRPANLEDVVSHKDIIST---LEKFISSNRVPHMLFYGPPGTGKTSTILACARKI 80
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSF 237
+Y+ + S G+ VR+ +++ R + ++ ++ +DE + Q++
Sbjct: 81 YGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNAL 140
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
VIE + N + I+P + SRC PL P ++E + VD V
Sbjct: 141 RRVIEKYTKNVRFCIICN-YINKISPAIQSRCTRFRFQPLPPKEIE----KTVDHV---- 191
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ ++ DA + GD R ALN L+
Sbjct: 192 ---IQSEHCNIDPDAKMAVLRLSKGDMRKALNILQ 223
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 59/216 (27%), Positives = 98/216 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RPV +N++VG + +S + +P+II GPPGTGKTT LA+A+
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAK---EGNVPNIIIAGPPGTGKTTSILCLARAL 91
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ A+ + L+A G+ VR+ ++ +K+ + + ++ +DE Q
Sbjct: 92 LGP-ALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 150
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E S A N S +I P+ SRC VL L D ++L +
Sbjct: 151 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLS--DAQVLAR--------- 199
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L + +V D +E + GD R ALN ++
Sbjct: 200 LLTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQ 235
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 168 (64.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 57/220 (25%), Positives = 95/220 (43%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H P E+ RPV ++VG + ++ S+ + P+II GPPG GKTT + +
Sbjct: 15 HLPWIEKYRPVKFKEIVGNEDTVARLSVFAT---QGNAPNIIIAGPPGVGKTTTIQCLAR 71
Query: 181 SV-AVSYKFVCLSAVTS---GVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQ 234
+ SYK L S G+ VR+ ++ +K+ + + ++ +DE + Q
Sbjct: 72 ILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQ 131
Query: 235 DSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
+ +E S A N S +I P+ SRC +L L D ++L K
Sbjct: 132 QALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLS--DAQVLAK-------- 181
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
L + ++ D +E + GD R LN L+ +A
Sbjct: 182 -LIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTA 220
Score = 37 (18.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 386 EEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALN 445
E H L+ + ND A LA++ + G P I + R + + + L L+
Sbjct: 237 EPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKR-INIDEHLKLD 295
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 165 (63.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 59/216 (27%), Positives = 98/216 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RPV +N++VG + +S + +P+II GPPGTGKTT LA+A+
Sbjct: 47 PWVEKYRPVKLNEIVGNEDTVSRLEVFAK---EGNVPNIIIAGPPGTGKTTSILCLARAL 103
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ A+ + L+A G+ VR+ ++ +K+ + + ++ +DE Q
Sbjct: 104 LGP-ALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQ 162
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E S A N S +I P+ SRC VL L D ++L +
Sbjct: 163 ALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLS--DAQVLAR--------- 211
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L + +V D +E + GD R ALN ++
Sbjct: 212 LLTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQ 247
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 128 (50.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 40/142 (28%), Positives = 71/142 (50%)
Query: 192 SAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFI 249
+A +GV D+R+ ++ R R S + + +DEVH + S ++ L +E+ + FI
Sbjct: 106 AASRTGVNDIREIIDSVR-YRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFI 164
Query: 250 GATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH 309
ATTE +T +LSRC+ L ++P D+ L++R D + G ++
Sbjct: 165 FATTEIRKVP-VT-VLSRCQRFDLRRIEPEDMIALMRRIAD--------AEGA---QIAE 211
Query: 310 DAIEFLCSNCDGDARVALNALE 331
DA+ + +G AR A + L+
Sbjct: 212 DALALIVRAAEGSARDATSLLD 233
Score = 88 (36.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAI 178
P+ L+ + RP D+VGQD ++ L++A ++R+ + I G GTGKTT A+ I
Sbjct: 8 PYQVLARKYRPETFADLVGQDAMVRT---LKNAFAADRIAQAFIMTGIRGTGKTTTARII 64
Query: 179 VNSV 182
+
Sbjct: 65 AKGM 68
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 163 (62.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 60/222 (27%), Positives = 97/222 (43%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
A + + P E+ RP +ND++ +LS ++ + +RLP ++ +GPPGTGKT+
Sbjct: 13 AAKIRNLPWVEKYRPQTLNDLISHQDILST---IQKFISEDRLPHLLLYGPPGTGKTSTI 69
Query: 176 KAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV-DEVHRF 229
A + +F + L S G+ VR + R K L + DE
Sbjct: 70 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 129
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q++ VIE + N +I L SRC PL P E+++ R
Sbjct: 130 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---ELMVPR-- 184
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L VG +V+++ D ++ L + GD R ALN L+
Sbjct: 185 ------LEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQ 220
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 164 (62.8 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 70/252 (27%), Positives = 109/252 (43%)
Query: 87 VQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPN 146
V E +D + P+ KR T + A P E+ RP+ + +VVG + +S
Sbjct: 6 VLEVVEDEKAGPAAAEKRGPTDTLGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRL 65
Query: 147 SLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAIVNSVAVSYKFVCLSAVTS-GVKDV 201
+ +P+II GPPGTGKTT LA+A++ A+ + L+A G+ V
Sbjct: 66 EVFAK---EGNVPNIIIAGPPGTGKTTSILCLARALLGP-ALKDAVLELNASNDRGIDVV 121
Query: 202 RDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFH 259
R+ ++ +K+ + + ++ +DE Q + +E S A N S
Sbjct: 122 RNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK 181
Query: 260 LITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC 319
+I P+ SRC VL L D +IL + L K V V D +E +
Sbjct: 182 IIEPIQSRCAVLRYTKLT--DSQILAR---------LLKIVEKEDVPYTDDGLEAIIFTA 230
Query: 320 DGDARVALNALE 331
GD R ALN L+
Sbjct: 231 QGDMRQALNNLQ 242
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 163 (62.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 60/222 (27%), Positives = 97/222 (43%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
A + + P E+ RP +ND++ +LS ++ + +RLP ++ +GPPGTGKT+
Sbjct: 13 AAKIRNLPWVEKYRPQTLNDLISHQDILST---IQKFISEDRLPHLLLYGPPGTGKTSTI 69
Query: 176 KAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV-DEVHRF 229
A + +F + L S G+ VR + R K L + DE
Sbjct: 70 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 129
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q++ VIE + N +I L SRC PL P E+++ R
Sbjct: 130 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---ELMVPR-- 184
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L VG +V+++ D ++ L + GD R ALN L+
Sbjct: 185 ------LEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQ 220
Score = 39 (18.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPL 505
P S+ ++ A R SVG NE + L
Sbjct: 293 PSSVRVHLLTKMADIEYRLSVGTNEKIQL 321
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 160 (61.4 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 57/214 (26%), Positives = 98/214 (45%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAIVNS 181
E+ RP +++VVG +++ L+S + S +P+++ G PGTGKTT LA ++ +
Sbjct: 20 EKYRPEFLDEVVGNPFVINT---LKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGN 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARK--LRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
A ++ G+ +RD ++ K + + K ++ +DEV + Q S
Sbjct: 77 QAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRR 136
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD--DVNNGLS 297
++E S A N S +I L SRC ++ L V LKR + D+ N
Sbjct: 137 IMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQV---LKRILKICDLEN--- 190
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
++ D ++ L DGD R A+N L+
Sbjct: 191 -------IKYTDDGLDALTFIADGDLRKAVNCLQ 217
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 160 (61.4 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 57/214 (26%), Positives = 98/214 (45%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAIVNS 181
E+ RP +++VVG +++ L+S + S +P+++ G PGTGKTT LA ++ +
Sbjct: 20 EKYRPEFLDEVVGNPFVINT---LKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGN 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARK--LRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
A ++ G+ +RD ++ K + + K ++ +DEV + Q S
Sbjct: 77 QAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRR 136
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD--DVNNGLS 297
++E S A N S +I L SRC ++ L V LKR + D+ N
Sbjct: 137 IMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQV---LKRILKICDLEN--- 190
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
++ D ++ L DGD R A+N L+
Sbjct: 191 -------IKYTDDGLDALTFIADGDLRKAVNCLQ 217
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 60/221 (27%), Positives = 103/221 (46%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV--A 183
E+ RP ++ +V GQ ++ +R V + +LP ++F+GP GTGKT+ A+ + A
Sbjct: 27 EKYRPDSLEEVKGQQEIVDT---VRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGA 83
Query: 184 VSYKFVCLSAVTS---GVKDVRDAVED---ARKLRVKSNKRT-------VLFVDEVHRFN 230
+YK + L S G+ VR+ +++ R++ K+ +T ++ +DE
Sbjct: 84 TNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMT 143
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
Q+S VIE + N S L L+SRC P+ D+ + R
Sbjct: 144 NVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPI---DISAIKDR--- 197
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+N + K V ++ +AI+ L +GD R ALN L+
Sbjct: 198 -LNTVIIKE----NVNISPEAIDALLKLSNGDMRRALNVLQ 233
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 58/245 (23%), Positives = 104/245 (42%)
Query: 106 KTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWG 165
K ++ LH H P E+ RP ++NDV Q+H + +L + S LP ++F+G
Sbjct: 10 KQKNQAYEEEKLH--HTPWVEKYRPKSLNDVSSQEHTIK---VLTQTIKSGNLPHMLFYG 64
Query: 166 PPGTGKTT----LAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT- 219
PPGTGKT+ LAK + + + L+A G+ VR+ +++ +L + + +
Sbjct: 65 PPGTGKTSTILALAKELYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKED 124
Query: 220 ----------VLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCR 269
++ +DE Q + +E+ + + N +I P+ SRC
Sbjct: 125 LQNYPCPPYKIIILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCS 184
Query: 270 VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNA 329
L + ++ LK G +++ H I+ L GD R A+
Sbjct: 185 KFRFKLLNNENAQLRLKYI------GQQENLRFESENNEHQVIQELLKISGGDLRKAITY 238
Query: 330 LEISA 334
L+ +A
Sbjct: 239 LQSAA 243
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 155 (59.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 59/229 (25%), Positives = 97/229 (42%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
H A + + P E+ RP ++D++ +LS ++ + +RLP ++ +GPPG
Sbjct: 6 HKQQQPEAAKIRNLPWVEKYRPQTLDDLISHQDILST---IQKFISEDRLPHLLLYGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV 223
TGKT+ A + +F + L S G+ VR + R K L +
Sbjct: 63 TGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVI 122
Query: 224 -DEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
DE + Q++ VIE + N +I L SRC PL P E
Sbjct: 123 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---E 179
Query: 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+++ R L V +V+++ D ++ L + GD R ALN L+
Sbjct: 180 LMVPR--------LEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQ 220
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 156 (60.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 65/234 (27%), Positives = 112/234 (47%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP ++++VGQD L+ L +++ + + +I+ GP GTGKTT A+A+ S+
Sbjct: 6 LANKYRPRLLDEIVGQDFLVK---CLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSL 62
Query: 183 AVSYK---FVCL--------------------SAVTSGVKDVRDAVEDARKLRVKSNKRT 219
+ CL +A +GV+DVR +E A + S ++
Sbjct: 63 LCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKS 122
Query: 220 VLFVDEVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
+ VDEVH ++S + L ++E+ + F ATTE + ++SRC+ L+ L
Sbjct: 123 YI-VDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQK--IPATIISRCQHYRLSRLS 179
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
R V + L++ ++E+ DAI+F+ DG R AL+ LE
Sbjct: 180 ---------RVV--IAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 156 (60.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 65/234 (27%), Positives = 112/234 (47%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP ++++VGQD L+ L +++ + + +I+ GP GTGKTT A+A+ S+
Sbjct: 6 LANKYRPRLLDEIVGQDFLVK---CLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSL 62
Query: 183 AVSYK---FVCL--------------------SAVTSGVKDVRDAVEDARKLRVKSNKRT 219
+ CL +A +GV+DVR +E A + S ++
Sbjct: 63 LCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKS 122
Query: 220 VLFVDEVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
+ VDEVH ++S + L ++E+ + F ATTE + ++SRC+ L+ L
Sbjct: 123 YI-VDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQK--IPATIISRCQHYRLSRLS 179
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
R V + L++ ++E+ DAI+F+ DG R AL+ LE
Sbjct: 180 ---------RVV--IAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 155 (59.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 58/226 (25%), Positives = 97/226 (42%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
+ A + + P E+ RP +ND++ +LS ++ + +RLP ++ +GPPGTGK
Sbjct: 10 EQPAATKIRNLPWVEKYRPQTLNDLISHQDILST---IQKFINEDRLPHLLLYGPPGTGK 66
Query: 172 TTLAKAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV-DE 225
T+ A + +F + L S G+ +R + R K L + DE
Sbjct: 67 TSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDE 126
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+ Q++ VIE + N +I L SRC PL P E+++
Sbjct: 127 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---ELMV 183
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
R L V +V+++ D ++ L + GD R ALN L+
Sbjct: 184 PR--------LEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 221
Score = 40 (19.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPL 505
P S+ I+ A R SVG NE + L
Sbjct: 294 PSSVRIHLLTKMADIEYRLSVGTNEKIQL 322
>TIGR_CMR|ECH_0319 [details] [associations]
symbol:ECH_0319 "holliday junction DNA helicase RuvB"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006310
"DNA recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255 HOGENOM:HOG000218623
KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2
TIGRFAMs:TIGR00635 RefSeq:YP_507140.1 ProteinModelPortal:Q2GHE3
SMR:Q2GHE3 STRING:Q2GHE3 GeneID:3927124 KEGG:ech:ECH_0319
PATRIC:20576141 BioCyc:ECHA205920:GJNR-319-MONOMER Uniprot:Q2GHE3
Length = 329
Score = 154 (59.3 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 51/215 (23%), Positives = 103/215 (47%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS--IIFWGPPGTGKTTLAKAIVNSVAVS 185
MRP ++D +GQ +++ + +A + + P ++ +GPPG GKTTLA I + V+
Sbjct: 19 MRPNLLDDFIGQSSVVNNLKIFINAAYTRKEPMDHVLLYGPPGLGKTTLAHIIAKELKVN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
++ T+G + D + + +LF+DE+HR N++ ++ +ED
Sbjct: 79 FRS------TAG--PLLSKAGDLAAILTNLQAKDILFIDEIHRLNRNIEEILYSAMEDFC 130
Query: 246 IVFI-----GATT---ENPSFHLITPLLSRCRVLTLNPLKPH-DVEILLK-RAVDDVNNG 295
+ I GA T + P F L+ +R +L+ NPL+ + I L+ + +++
Sbjct: 131 LDIIVGEGCGARTLRVDLPPFTLVGAT-TRIGLLS-NPLRDRFGIPIHLEFYSTEELTKV 188
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330
+ ++ + +++ + + G R+AL L
Sbjct: 189 IQRAAKVIKTNISNSGAQEISLRSRGTPRIALRLL 223
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 154 (59.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 57/218 (26%), Positives = 100/218 (45%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV 184
+E+ RP ++D+ QD +++ +L+ A+ LP ++F+GPPGTGKT+ A A +
Sbjct: 18 TEKYRPKTLDDIAYQDEVVT---MLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 185 SYKF----VCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT------VLFVDEVHRFNKSQ 233
F + L+A G+ VR ++ K + + R ++ +DEV +
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREA 134
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
Q + VIED S N LI P++SRC L P ++++ R + D
Sbjct: 135 QAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL-PAEIQVQRLRTICDAE 193
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
GT ++ D ++ + +GD R A+ L+
Sbjct: 194 --------GT--PMSDDELKQVMEYSEGDLRRAVCTLQ 221
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 154 (59.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 57/218 (26%), Positives = 100/218 (45%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV 184
+E+ RP ++D+ QD +++ +L+ A+ LP ++F+GPPGTGKT+ A A +
Sbjct: 18 TEKYRPKTLDDIAYQDEVVT---MLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 185 SYKF----VCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT------VLFVDEVHRFNKSQ 233
F + L+A G+ VR ++ K + + R ++ +DEV +
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREA 134
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
Q + VIED S N LI P++SRC L P ++++ R + D
Sbjct: 135 QAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSL-PAEIQVQRLRTICDAE 193
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
GT ++ D ++ + +GD R A+ L+
Sbjct: 194 --------GT--PMSDDELKQVMEYSEGDLRRAVCTLQ 221
>TIGR_CMR|CBU_1570 [details] [associations]
symbol:CBU_1570 "Holliday junction DNA helicase RuvB"
species:227377 "Coxiella burnetii RSA 493" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006310 GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 RefSeq:NP_820553.1
ProteinModelPortal:Q83BE0 SMR:Q83BE0 GeneID:1209480
KEGG:cbu:CBU_1570 PATRIC:17931903
BioCyc:CBUR227377:GJ7S-1549-MONOMER Uniprot:Q83BE0
Length = 351
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 47/158 (29%), Positives = 75/158 (47%)
Query: 103 KRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR--LPS 160
++++TR + +T + P L +RP ++D +GQ + + A + R L
Sbjct: 3 EKIETRL-IGATVQSNEPD--LERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALDH 59
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
++ +GPPG GKTTLA I + + K TSG V + D L V
Sbjct: 60 VLIFGPPGLGKTTLAHIIAHEMQAGLK------QTSG--PVLEKAGDLAALLTNLEPHDV 111
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSI-VFIGATTENPS 257
LF+DE+HR N + ++ P +ED + + IG E PS
Sbjct: 112 LFIDEIHRLNPAIEEVLYPALEDFQLDIIIG---EGPS 146
>UNIPROTKB|Q9KR02 [details] [associations]
symbol:ruvB "Holliday junction ATP-dependent DNA helicase
RuvB" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006310 "DNA recombination" evidence=ISS] [GO:0009378 "four-way
junction helicase activity" evidence=ISS] HAMAP:MF_00016
InterPro:IPR003593 InterPro:IPR004605 InterPro:IPR008823
InterPro:IPR008824 Pfam:PF05491 Pfam:PF05496 ProDom:PD005323
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006310 GO:GO:0009378 GO:GO:0009432
eggNOG:COG2255 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 PIR:F82149
RefSeq:NP_231479.1 ProteinModelPortal:Q9KR02 SMR:Q9KR02
DNASU:2613599 GeneID:2613599 KEGG:vch:VC1845 PATRIC:20082732
Uniprot:Q9KR02
Length = 334
Score = 153 (58.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 39/130 (30%), Positives = 62/130 (47%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR--LPSIIFWGPPGTGKTTLAKAIVNS 181
+ +RP + D GQDH+ + A + L ++ +GPPG GKTTLA + N
Sbjct: 21 IDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE 80
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ V+ + TSG V + D L + VLF+DE+HR + ++ P +
Sbjct: 81 MGVNIR------TTSG--PVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAM 132
Query: 242 EDGSI-VFIG 250
ED + + IG
Sbjct: 133 EDYQLDIMIG 142
>TIGR_CMR|VC_1845 [details] [associations]
symbol:VC_1845 "Holliday junction DNA helicase RuvB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255 KO:K03551 OMA:HIIAKEM
ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635
PIR:F82149 RefSeq:NP_231479.1 ProteinModelPortal:Q9KR02 SMR:Q9KR02
DNASU:2613599 GeneID:2613599 KEGG:vch:VC1845 PATRIC:20082732
Uniprot:Q9KR02
Length = 334
Score = 153 (58.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 39/130 (30%), Positives = 62/130 (47%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR--LPSIIFWGPPGTGKTTLAKAIVNS 181
+ +RP + D GQDH+ + A + L ++ +GPPG GKTTLA + N
Sbjct: 21 IDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE 80
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ V+ + TSG V + D L + VLF+DE+HR + ++ P +
Sbjct: 81 MGVNIR------TTSG--PVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAM 132
Query: 242 EDGSI-VFIG 250
ED + + IG
Sbjct: 133 EDYQLDIMIG 142
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 151 (58.2 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 59/217 (27%), Positives = 93/217 (42%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP ++D+VG + L+ +P +I G PG GKTT + + +
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDR---LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVED--ARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
SY L S G+ VR+ ++ +KL + K ++ +DE Q +
Sbjct: 67 LGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA 126
Query: 237 FLPVIE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
+E S F A N S +I PL SRC +L + L DV LKR + +
Sbjct: 127 LRRTMELYSNSTRFAFAC--NQSNKIIEPLQSRCAILRYSKLSDEDV---LKRLLQIIK- 180
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L V+ +D +E + +GD R A+N L+
Sbjct: 181 -LED------VKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 151 (58.2 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 78/338 (23%), Positives = 130/338 (38%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP N++D++ + + + + +N LP ++F+GPPGTGKT+ +AI +
Sbjct: 25 PWVEKYRPKNLDDLIAHEDI---TQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKL 81
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVEDARKLRVKSNKRT---VLFVDEVHRFNKSQQD 235
+Y + L S G+ VR+ ++ N ++ +DE Q
Sbjct: 82 YGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQT 141
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ VIE + N +I L SRC +PL EI LK ++ N
Sbjct: 142 ALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKEN-- 199
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAXXXXXXXXXXXXXXXX 354
V+V+ A+ + GD R LN L+ +S +
Sbjct: 200 ---------VKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPM 250
Query: 355 SDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
V + D +EAFQ + G ++I+ L K + D D I L ++
Sbjct: 251 PSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVI--LCKL 308
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQ 452
L Y + +G ++ L L V C+Q
Sbjct: 309 LSHLSDIEY---------NLSIGSSEKLQLGSLVGCFQ 337
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 152 (58.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 58/222 (26%), Positives = 96/222 (43%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
A + + P E+ RP ++D++ +LS ++ + +RLP ++ +GPPGTGKT+
Sbjct: 28 ATKIRNLPWVEKYRPQTLDDLISHQDILST---IQKFISEDRLPHLLLYGPPGTGKTSTI 84
Query: 176 KAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV-DEVHRF 229
A + +F + L S G+ VR + R K L + DE
Sbjct: 85 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 144
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q++ VIE + N +I L SRC PL P E+++ R
Sbjct: 145 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---ELMVPR-- 199
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L V +V+++ D ++ L + GD R ALN L+
Sbjct: 200 ------LEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQ 235
Score = 40 (19.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPL 505
P S+ I+ A R SVG NE + L
Sbjct: 308 PSSVRIHLLTKMADIEYRLSVGTNEKIQL 336
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 58/216 (26%), Positives = 97/216 (44%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RP + D+VG + + L+ V +P++I G PG GKTT LA +
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLI---VQDGNMPNMIISGLPGIGKTTSIHCLAYEL 66
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVED-AR-KLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ + L+A G+ VR+ ++ A+ K+ + ++ ++ +DE Q
Sbjct: 67 LGDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQ 126
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ IE S A N S +I PL SRC +L N L D E+L +
Sbjct: 127 ALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLS--DEEVLAR--------- 175
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L + + V+ N + ++ L +GD R A+N L+
Sbjct: 176 LLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQ 211
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 152 (58.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 67/235 (28%), Positives = 116/235 (49%)
Query: 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAI---VNSV 182
+ RP N D++GQ+ L+ +L +A N++P SI+ G G GKTT A+ I +N +
Sbjct: 19 KYRPSNFKDLIGQEVLVR---VLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCI 75
Query: 183 A-------------VSYK-F-----VCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLF 222
+ +S K F + + A ++ ++DV+ +E++R + + S+K V
Sbjct: 76 SGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPI-SSKFKVYI 134
Query: 223 VDEVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
+DEVH + S ++ L V+E+ + + FI ATTE +T ++SRC+
Sbjct: 135 IDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIP-VT-IISRCQRFDFQ------ 186
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335
I + VD + K V + ++I+ + N DG R AL+ LE +AI
Sbjct: 187 -RISTDKLVDHLKVVAKKE----NVSFDEESIKLIAYNADGSIRNALSLLEQAAI 236
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 57/214 (26%), Positives = 96/214 (44%)
Query: 124 LSERMRPVNINDVVGQDHL--LSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
L+ + RP +VV Q+++ + N L A+ L F G GTGKTT A+
Sbjct: 3 LASKYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYL----FCGGAGTGKTTTARIFAKD 58
Query: 182 V--AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
V + +A +GV++VR+ +ED+R + S + V +DEVH + ++ L
Sbjct: 59 VNKGLGSPIEIDAASNNGVENVRNIIEDSRYKSMDSEFK-VYIIDEVHMLSTGAFNALLK 117
Query: 240 VIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
+E+ S VFI TT+ P + +LSR + + D+ L+ ++ N
Sbjct: 118 TLEEPSSGTVFILCTTD-PQ-KIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEE-- 173
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
G DA+ F+ +G R ++ LE
Sbjct: 174 ----GAGYSYERDALSFIGKLANGGMRDSITRLE 203
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 149 (57.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 58/226 (25%), Positives = 103/226 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RP ++DV G +L+ + V +N+LP ++ +GPPGTGKT+ LA+ I
Sbjct: 46 PWVEKYRPNTLDDVSGHKDILAT---INRFVEANQLPHLLLYGPPGTGKTSTILALARRI 102
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVED----------ARKLRVKSNKRT--VLFVDE 225
S + + L+A G+ VR+ ++ A KS+ + ++ +DE
Sbjct: 103 YGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDE 162
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+ Q + ++E + N + L LLSRC +PLK D+ +L+
Sbjct: 163 ADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLI 222
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ ++ + V + +A++ L + GD R ALN L+
Sbjct: 223 DQVIEKED-----------VRIQPEAVDSLVTLSRGDMRRALNVLQ 257
>UNIPROTKB|P0A812 [details] [associations]
symbol:ruvB "branch migration of Holliday structures;
repair helicase" species:83333 "Escherichia coli K-12" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000725 "recombinational repair" evidence=IMP] [GO:0048476
"Holliday junction resolvase complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009378 "four-way junction
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009432 "SOS response" evidence=IEA;IEP;RCA] HAMAP:MF_00016
InterPro:IPR003593 InterPro:IPR004605 InterPro:IPR008823
InterPro:IPR008824 Pfam:PF05491 Pfam:PF05496 ProDom:PD005323
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009378 GO:GO:0009432
GO:GO:0000725 GO:GO:0048476 EMBL:X07091 EMBL:M21298 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 PIR:B28533
RefSeq:NP_416374.1 RefSeq:YP_490122.1 ProteinModelPortal:P0A812
SMR:P0A812 DIP:DIP-47870N IntAct:P0A812 MINT:MINT-1266054
EnsemblBacteria:EBESCT00000004471 EnsemblBacteria:EBESCT00000004472
EnsemblBacteria:EBESCT00000015711 GeneID:12931888 GeneID:946371
KEGG:ecj:Y75_p1836 KEGG:eco:b1860 PATRIC:32119043 EchoBASE:EB0917
EcoGene:EG10924 BioCyc:EcoCyc:EG10924-MONOMER
BioCyc:ECOL316407:JW1849-MONOMER BioCyc:MetaCyc:EG10924-MONOMER
Genevestigator:P0A812 Uniprot:P0A812
Length = 336
Score = 147 (56.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 58/220 (26%), Positives = 99/220 (45%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSL-LRSA-VCSNRLPSIIFWGPPGTGKTTLAK 176
+P +RP + + VGQ + S + +++A + + L ++ +GPPG GKTTLA
Sbjct: 14 LPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLAN 73
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
+ N + V+ + TSG V + D + VLF+DE+HR + ++
Sbjct: 74 IVANEMGVNLR------TTSG--PVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEV 125
Query: 237 FLPVIEDGSI-VFIGA-------TTENPSFHLITPLLSRCRVLTLNPLKPHD--VEILLK 286
P +ED + + IG + P F LI +R LT +PL+ V+ L
Sbjct: 126 LYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGAT-TRAGSLT-SPLRDRFGIVQRLEF 183
Query: 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
V D+ +S+S +E++ D + G R+A
Sbjct: 184 YQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIA 223
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 54/222 (24%), Positives = 102/222 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP N+++V QD +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 93
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ +R+ V+ +L ++ ++ +DE
Sbjct: 94 FGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSM 153
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q + +E S N +I PL SRC PL +I +R +
Sbjct: 154 TSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSD---KIQQQRLL 210
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
D +S+ V++ +A+ +L DGD R A+ L+
Sbjct: 211 D-----VSEK---ENVKITSEAVSYLVKVSDGDLRKAITYLQ 244
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 54/222 (24%), Positives = 102/222 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP N+++V QD +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 93
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ +R+ V+ +L ++ ++ +DE
Sbjct: 94 FGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSM 153
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q + +E S N +I PL SRC PL +I +R +
Sbjct: 154 TSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSD---KIQQQRLL 210
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
D +S+ V++ +A+ +L DGD R A+ L+
Sbjct: 211 D-----VSEK---ENVKITSEAVSYLVKVSDGDLRKAITYLQ 244
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 145 (56.1 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 56/216 (25%), Positives = 99/216 (45%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
AP E+ RP + D+VG ++++ ++ +P+I+ GPPG GKTT A+
Sbjct: 10 APWVEKYRPKVLADIVGNENIVERLKVIGH---EGNVPNIVLSGPPGCGKTTSVWALARE 66
Query: 182 VA---VSYKFVCLSAVTS-GVKDVRDAVED-AR-KLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ V + L+A G+ VR ++ A+ K+ + + ++ +DE Q
Sbjct: 67 LLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQ 126
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E + A N S +I P+ SRC +L L P V++L + V +V
Sbjct: 127 ALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSP--VQLLTR--VKEV--- 179
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+K+ +V + +E + GD R ALN L+
Sbjct: 180 -AKA---EKVNYDDGGLEAILFTAQGDMRQALNNLQ 211
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 58/222 (26%), Positives = 93/222 (41%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
A + P E+ RP + D++ +LS ++ + +RLP ++ +GPPGTGKT+
Sbjct: 13 AARARNLPWVEKYRPQTLADLISHQDILST---IQKFISEDRLPHLLLYGPPGTGKTSTI 69
Query: 176 KAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV-DEVHRF 229
A + +F + L S G+ VR + R K L + DE
Sbjct: 70 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 129
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q++ VIE + N +I L SRC PL P E+++ R
Sbjct: 130 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---ELMVPR-- 184
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L V V+++ D ++ L + GD R ALN L+
Sbjct: 185 ------LEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQ 220
>TIGR_CMR|SO_2429 [details] [associations]
symbol:SO_2429 "Holliday junction DNA helicase RuvB"
species:211586 "Shewanella oneidensis MR-1" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0006310 GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 RefSeq:NP_718019.1
ProteinModelPortal:Q8EEF3 SMR:Q8EEF3 GeneID:1170142
KEGG:son:SO_2429 PATRIC:23524473 Uniprot:Q8EEF3
Length = 334
Score = 144 (55.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 57/215 (26%), Positives = 96/215 (44%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR---LPSIIFWGPPGTGKTTLAKAIVN 180
+ MRP +++ GQD + + A NR L ++ +GPPG GKTTLA + N
Sbjct: 19 IDRAMRPKLLDEYTGQDDTRAQLKVFIQAA-KNREEALDHMLIYGPPGLGKTTLAMIVAN 77
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ V+ K TSG V + D L VLF+DE+HR + ++ P
Sbjct: 78 EMGVNIKS------TSG--PVLEKAGDLAALLTNLEAGDVLFIDEIHRLSPVVEEILYPA 129
Query: 241 IEDGSI-VFIGATTENPSFHLITP---LL---SRCRVLTLNPLKPH-DVEILLK-RAVDD 291
+ED + + IG S L P L+ +R LT +PL+ + + L+ V D
Sbjct: 130 MEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALT-SPLRARFGIPLRLEFYNVKD 188
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
++ +++S + ++ + + G R+A
Sbjct: 189 LSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIA 223
>TIGR_CMR|CHY_1522 [details] [associations]
symbol:CHY_1522 "Holliday junction DNA helicase RuvB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006310 "DNA recombination" evidence=ISS] [GO:0009378 "four-way
junction helicase activity" evidence=ISS] HAMAP:MF_00016
InterPro:IPR003593 InterPro:IPR004605 InterPro:IPR008823
InterPro:IPR008824 Pfam:PF05491 Pfam:PF05496 ProDom:PD005323
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006310 GO:GO:0009378 GO:GO:0009432
eggNOG:COG2255 HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM
ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635
RefSeq:YP_360354.1 ProteinModelPortal:Q3ABY0 SMR:Q3ABY0
STRING:Q3ABY0 GeneID:3728351 KEGG:chy:CHY_1522 PATRIC:21276173
BioCyc:CHYD246194:GJCN-1521-MONOMER Uniprot:Q3ABY0
Length = 339
Score = 143 (55.4 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 55/215 (25%), Positives = 100/215 (46%)
Query: 128 MRPVNINDVVGQDHLLSPNSL-LRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP +++ +GQ + S+ + +A N L ++ +GPPG GKTTLA I N + V
Sbjct: 20 LRPRRLSEYIGQQKVKETISIFIEAAKKRNEALDHVLLFGPPGLGKTTLATIIANELGVD 79
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
K +TSG R D + ++ VLF+DE+HR + ++ +ED +
Sbjct: 80 IK------ITSGPALERPG--DLAAILTNLGEKDVLFIDEIHRLPRIVEEVLYSAMEDFA 131
Query: 246 I-VFIGATTENPSFHLITP---LL---SRCRVLTLNPLKPHD--VEILLKRAVDDVNNGL 296
+ + +G S L P L+ +R +LT +PL+ V L +V+++ +
Sbjct: 132 LDIMLGKGPGARSLRLSLPKFTLIGATTRAGLLT-SPLRDRFGMVHRLEFYSVEELMLII 190
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
++S + E+ + + G R+A L+
Sbjct: 191 NRSAALLKTEITPEGSFEIAKRSRGTPRIANRLLK 225
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 143 (55.4 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 58/223 (26%), Positives = 95/223 (42%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
A + P E+ RP + D++ +LS ++ + +RLP ++ +GPPGTGKT+
Sbjct: 13 AARARNLPWVEKYRPQTLADLISHQDILST---IQKFISEDRLPHLLLYGPPGTGKTSTI 69
Query: 176 KAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRV--KSNKRTVLFVDEVHR 228
A + +F + L S G+ VR + R K + V+ +DE
Sbjct: 70 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVI-LDEADA 128
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
+ Q++ VIE + N +I L SRC PL P E+++ R
Sbjct: 129 MTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP---ELMVPR- 184
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
L V V+++ D ++ L + GD R ALN L+
Sbjct: 185 -------LEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQ 220
>TIGR_CMR|NSE_0575 [details] [associations]
symbol:NSE_0575 "holliday junction DNA helicase RuvB"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006310
"DNA recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006310 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009378 GO:GO:0009432
eggNOG:COG2255 HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM
ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635
RefSeq:YP_506456.1 ProteinModelPortal:Q2GDJ0 STRING:Q2GDJ0
GeneID:3931683 KEGG:nse:NSE_0575 PATRIC:22681193
BioCyc:NSEN222891:GHFU-592-MONOMER Uniprot:Q2GDJ0
Length = 331
Score = 142 (55.0 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 55/214 (25%), Positives = 95/214 (44%)
Query: 128 MRPVNINDVVGQDHLLSPNSL-LRSAVCSN-RLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP +I VGQ ++ + + SA N L ++F GPPG GKTTLA I N +
Sbjct: 17 LRPKSIEKFVGQQRVVENLQVFIDSAQKRNDSLDHVLFCGPPGLGKTTLAHIISNELE-- 74
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
S + + + D + +K +LF+DE+HR + ++ P +ED
Sbjct: 75 ------SRIHTTAGPLLSKAGDIAAILTNLHKNDILFIDEIHRLPSAVEEVLYPAMEDYH 128
Query: 246 IVFI---GATTENPSFHL--ITPLLSRCRVLTL-NPLKPH-DVEILLK-RAVDDVNNGLS 297
+ I G ++ +L T + + R+ L NPL+ + + L V ++ L
Sbjct: 129 LDLIVGDGPAAKSIRINLAKFTLVAATTRIGMLSNPLRDRFGITLRLDFYTVSELLQLLQ 188
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
++ V + + A+ L G R+AL L+
Sbjct: 189 QAAERLSVNIENGAMIELAKRSRGTPRIALRLLK 222
>TIGR_CMR|BA_4650 [details] [associations]
symbol:BA_4650 "Holliday junction DNA helicase RuvB"
species:198094 "Bacillus anthracis str. Ames" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0009378
GO:GO:0009432 eggNOG:COG2255 HOGENOM:HOG000218623 KO:K03551
OMA:HIIAKEM ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2
TIGRFAMs:TIGR00635 RefSeq:NP_846867.1 RefSeq:YP_021297.1
RefSeq:YP_030562.1 ProteinModelPortal:Q81LG9 SMR:Q81LG9
DNASU:1084980 EnsemblBacteria:EBBACT00000010014
EnsemblBacteria:EBBACT00000015078 EnsemblBacteria:EBBACT00000021928
GeneID:1084980 GeneID:2819254 GeneID:2852928 KEGG:ban:BA_4650
KEGG:bar:GBAA_4650 KEGG:bat:BAS4315
BioCyc:BANT260799:GJAJ-4370-MONOMER
BioCyc:BANT261594:GJ7F-4520-MONOMER Uniprot:Q81LG9
Length = 333
Score = 142 (55.0 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 43/145 (29%), Positives = 64/145 (44%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIV 179
A L +RP + +GQD + A + L ++ +GPPG GKTTLA I
Sbjct: 15 ADLEYSLRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIA 74
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
N + V+ + TSG R D + VLF+DE+HR ++S ++ P
Sbjct: 75 NEMGVNVR------TTSGPAIERPG--DLAAVLTSLQPGDVLFIDEIHRLHRSIEEVLYP 126
Query: 240 VIEDGSI-VFIGATTENPSFHLITP 263
+ED + + IG S L P
Sbjct: 127 AMEDFCLDIVIGKGPSARSVRLDLP 151
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/181 (29%), Positives = 84/181 (46%)
Query: 158 LPSIIFWGPPGTGKTT----LAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVE--DARK 210
+P+II GPPGTGKTT LA+A++ A+ + L+A G+ VR+ ++ +K
Sbjct: 10 VPNIIIAGPPGTGKTTSILCLARALLGP-ALKDAVLELNASNDRGIDVVRNKIKMFAQQK 68
Query: 211 LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRV 270
+ + + ++ +DE Q + +E S A N S +I P+ SRC V
Sbjct: 69 VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV 128
Query: 271 LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330
L L D +IL + + N + K +V D +E + GD R ALN L
Sbjct: 129 LRYTKLT--DAQILAR-----LLNVIEKE----KVPYTDDGLEAIIFTAQGDMRQALNNL 177
Query: 331 E 331
+
Sbjct: 178 Q 178
>TIGR_CMR|DET_0606 [details] [associations]
symbol:DET_0606 "Holliday junction DNA helicase RuvB"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006310 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009378 GO:GO:0009432
eggNOG:COG2255 HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM
ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635
RefSeq:YP_181348.1 ProteinModelPortal:Q3Z8V1 SMR:Q3Z8V1
STRING:Q3Z8V1 GeneID:3230049 KEGG:det:DET0606 PATRIC:21608281
BioCyc:DETH243164:GJNF-607-MONOMER Uniprot:Q3Z8V1
Length = 349
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 55/215 (25%), Positives = 94/215 (43%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIV 179
A L +RP ++D +GQ L + A L ++ +GPPG GKTTL+ I
Sbjct: 18 AKLDTSLRPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYGPPGLGKTTLSHIIA 77
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ V+ + +TSG R D + +LF+DE+HR +++ ++ P
Sbjct: 78 LEMGVNIR------ITSGPAIERQG--DLAAILTNLKPFDILFIDEIHRLSRNVEEVLYP 129
Query: 240 VIEDGSI-VFIGATTENPSFHLITP---LL-SRCRVLTLN-PLKPHDVEILLKRAVDD-- 291
+ED ++ + +G S L P L+ + R L+ PL+ I D+
Sbjct: 130 AMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLDFYDEDA 189
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
+++ +S+S VE + I + G RVA
Sbjct: 190 IHDIVSRSAHILGVEAEENGIRQIACRSRGTPRVA 224
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 47/162 (29%), Positives = 77/162 (47%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RP N+++V QDH ++ +L+ + S LP ++F+GPPGTGKT+ L K +
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVT---VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRV-KSNKRT----------VLFVDEV 226
+ + + L+A G+ VR+ V++ +L V K +K ++ +DE
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 227 HRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRC 268
Q + +E S V N +I PL SRC
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRC 184
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 55/226 (24%), Positives = 101/226 (44%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL---- 174
V P E+ RP +++V QD +++ +LR ++ LP+++F+GPPGTGKT+
Sbjct: 35 VKPVPWVEKYRPKCVDEVAFQDEVVA---VLRKSLEGADLPNLLFYGPPGTGKTSTILAA 91
Query: 175 AKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDE 225
A+ + + + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 92 ARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDE 151
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+ Q + +E S N +I PL SRC PL +I
Sbjct: 152 ADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQ 208
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+R +D V++ ++ I +L +GD R A+ L+
Sbjct: 209 ERLLDIAEK--------ENVKIGNEEIAYLVKISEGDLRKAITFLQ 246
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 52/215 (24%), Positives = 95/215 (44%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP+ ++D+VG + + L+ +P ++ G PG GKTT + +++
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDR---LKVIAKEGNMPHLVISGMPGIGKTTSILCLAHAL 78
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVED--ARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
+YK L S G+ VR+ ++ +K+ + + ++ +DE Q +
Sbjct: 79 LGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQA 138
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
+E S A N S +I P+ SRC +L + L V L+R ++ +
Sbjct: 139 LRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQV---LQRLLN-----I 190
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
K+ +V D + L +GD R A+N L+
Sbjct: 191 CKA---EKVNYTDDGLAALIMTAEGDMRQAVNNLQ 222
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 54/226 (23%), Positives = 103/226 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP ++D+V Q++ + +L+ V + +P +IF GPPGTGKT+ A+ + +
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVM---MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 183 A----VSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNK-----RTVL------FVDEV 226
+S + + L+A G+ VR+ ++ ++ + NK + VL +DE
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEA 121
Query: 227 HRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLK 286
+ Q + +IE S V N + P+ SRC + P + I +
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSI-P--INIKKE 178
Query: 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332
+ + N +++ DA+E + +GD R A++ L++
Sbjct: 179 KLLYICQN--------ENIDIVDDALEKIIETTEGDLRRAVSILQL 216
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 54/226 (23%), Positives = 103/226 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP ++D+V Q++ + +L+ V + +P +IF GPPGTGKT+ A+ + +
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVM---MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 183 A----VSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNK-----RTVL------FVDEV 226
+S + + L+A G+ VR+ ++ ++ + NK + VL +DE
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEA 121
Query: 227 HRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLK 286
+ Q + +IE S V N + P+ SRC + P + I +
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSI-P--INIKKE 178
Query: 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332
+ + N +++ DA+E + +GD R A++ L++
Sbjct: 179 KLLYICQN--------ENIDIVDDALEKIIETTEGDLRRAVSILQL 216
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 77/330 (23%), Positives = 139/330 (42%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP +ND++ + ++S ++ V LP ++ GPPGTGKT+ A+ +
Sbjct: 14 PWVEKYRPNVLNDIISHEQVIST---IKRFVQKGELPHLLLHGPPGTGKTSTILAVCKEL 70
Query: 183 AVSYK--FVC-LSAVTS-GVKDVRDAVE---DARKLRVKSNKRTV--LFVDEVHRFNKSQ 233
+ FV L+A G+ +RD ++ +++ K T+ + +DE
Sbjct: 71 YGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPA 130
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDV 292
Q++ ++E+ + N + ITP + SRC PLK E + +A+D
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCN-YVNKITPAIQSRCTAFRFAPLKK---EYMKNKALD-- 184
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXXXXXX 352
++KS V + I+ L GD R LN L++ +++
Sbjct: 185 ---IAKS---ENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLD 238
Query: 353 X-XSDGCSPYVALVTLDDAKEAFQ-CKHLAYDRAGEEHYNLISALHKSMRGND-ADAAIY 409
+ T KE+++ +L YD+ G +++ L++S+ D D+A
Sbjct: 239 IPLPSETKKILEYFTKGSIKESYEFVSNLQYDK-GYSTKDIMMCLYESVLTYDFPDSAFC 297
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLA 439
L + GE I R ASE + L+
Sbjct: 298 LLLKNF--GE----IEERCSSGASEQITLS 321
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 77/330 (23%), Positives = 139/330 (42%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP +ND++ + ++S ++ V LP ++ GPPGTGKT+ A+ +
Sbjct: 14 PWVEKYRPNVLNDIISHEQVIST---IKRFVQKGELPHLLLHGPPGTGKTSTILAVCKEL 70
Query: 183 AVSYK--FVC-LSAVTS-GVKDVRDAVE---DARKLRVKSNKRTV--LFVDEVHRFNKSQ 233
+ FV L+A G+ +RD ++ +++ K T+ + +DE
Sbjct: 71 YGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPA 130
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDV 292
Q++ ++E+ + N + ITP + SRC PLK E + +A+D
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCN-YVNKITPAIQSRCTAFRFAPLKK---EYMKNKALD-- 184
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXXXXXX 352
++KS V + I+ L GD R LN L++ +++
Sbjct: 185 ---IAKS---ENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLD 238
Query: 353 X-XSDGCSPYVALVTLDDAKEAFQ-CKHLAYDRAGEEHYNLISALHKSMRGND-ADAAIY 409
+ T KE+++ +L YD+ G +++ L++S+ D D+A
Sbjct: 239 IPLPSETKKILEYFTKGSIKESYEFVSNLQYDK-GYSTKDIMMCLYESVLTYDFPDSAFC 297
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLA 439
L + GE I R ASE + L+
Sbjct: 298 LLLKNF--GE----IEERCSSGASEQITLS 321
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 138 (53.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 58/217 (26%), Positives = 92/217 (42%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP +++DV ++ L + N+LP ++ +GPPGTGKT+ A+ +
Sbjct: 40 PWVEKYRPQSLDDVAAHRDIIDTIDRLTN---ENKLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVEDARKLRV----KSNKRTVLFVDEVHRFNKSQQ 234
Y+ + L S G+ VR ++D + KS+ + VL +DE K Q
Sbjct: 97 YGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVL-LDEADAMTKDAQ 155
Query: 235 DSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
+ VIE + A N +I L SRC PL + LK ++
Sbjct: 156 FALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIE---- 211
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
R+ V+ + L +GD R ALN L+
Sbjct: 212 -------AERLVVSDCGLAALVRLSNGDMRKALNILQ 241
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 137 (53.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 53/222 (23%), Positives = 103/222 (46%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q + +E S N +I PL SRC PL +I +R +
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQQRLL 212
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
D ++K V+++ + I +L +GD R A+ L+
Sbjct: 213 D-----IAKK---ENVKISDEGIAYLVKVSEGDLRKAITFLQ 246
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 137 (53.3 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 53/222 (23%), Positives = 102/222 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 94
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 95 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 154
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q + +E S N +I PL SRC PL +I +R +
Sbjct: 155 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQQRLL 211
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
D + V+V+++ I +L +GD R A+ L+
Sbjct: 212 DIADK--------EHVKVSNEGIAYLVKVSEGDLRKAITFLQ 245
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 137 (53.3 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 53/222 (23%), Positives = 103/222 (46%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q + +E S N +I PL SRC PL +I +R +
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQQRLL 212
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
D ++K V+++ + I +L +GD R A+ L+
Sbjct: 213 D-----IAKK---ENVKISDEGIAYLVKVSEGDLRKAITFLQ 246
>TIGR_CMR|APH_0166 [details] [associations]
symbol:APH_0166 "holliday junction DNA helicase RuvB"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006310 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009378 GO:GO:0009432
RefSeq:YP_504790.1 ProteinModelPortal:Q2GLG1 SMR:Q2GLG1
STRING:Q2GLG1 GeneID:3930839 KEGG:aph:APH_0166 PATRIC:20948902
eggNOG:COG2255 HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM
ProtClustDB:PRK00080 BioCyc:APHA212042:GHPM-201-MONOMER
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 Uniprot:Q2GLG1
Length = 329
Score = 136 (52.9 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 57/227 (25%), Positives = 103/227 (45%)
Query: 117 LHVPHA-PLSER---MRPVNINDVVGQDHLLSPNSLLRSAVCSNR--LPSIIFWGPPGTG 170
LH A P ER +RP I + VGQ ++ + + R L ++ +GPPG G
Sbjct: 5 LHQHKAIPEDERNFALRPSLIEEFVGQSEIIENLKVFIKSAYERRATLDHVLLYGPPGLG 64
Query: 171 KTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
KTTLA I + VS + TSG + D + VLF+DE+HR +
Sbjct: 65 KTTLAHIIAKELKVSLRS------TSG--PLLSKAGDLAAILTNLQPMDVLFIDEIHRLH 116
Query: 231 KSQQDSFLPVIEDGSIVFI-----GATT---ENPSFHLITPLLSRCRVLTLNPLKPH-DV 281
++ ++ +ED + + GA T + P+F L+ +R +++ NPL+ +
Sbjct: 117 RNIEEILYSAMEDCCLDIVVGEGCGARTLRIDLPAFTLVGAT-TRFGLIS-NPLRDRFGI 174
Query: 282 EILLK-RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVAL 327
+ L+ +V+++ + ++ +++ + S G R+AL
Sbjct: 175 PLHLEFYSVEELMLVIKRAAHVICTDIDDSGAYEIASRSRGTPRIAL 221
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 52/222 (23%), Positives = 102/222 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
+ Q + +E S N +I PL SRC PL +I +R +
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQQRLL 212
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
D + V+++++ I +L +GD R A+ L+
Sbjct: 213 DIADK--------EHVKISNEGIAYLVQVSEGDLRKAITFLQ 246
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 135 (52.6 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 54/226 (23%), Positives = 100/226 (44%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL---- 174
V P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+
Sbjct: 35 VKPVPWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAA 91
Query: 175 AKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDE 225
A+ + + + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 92 ARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDE 151
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+ Q + +E S N +I PL SRC PL +I
Sbjct: 152 ADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQ 208
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
KR +D V++ + I +L +GD R A+ L+
Sbjct: 209 KRLLDIAEK--------ENVKIGDEEIAYLVRISEGDLRKAITFLQ 246
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 91 (37.1 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
L + RP + +VVGQ+H+ +P S+ A N + +F GP G GKT+ A+ + S+
Sbjct: 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINH--AYLFSGPRGCGKTSSARILARSL 59
Score = 83 (34.3 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 32/98 (32%), Positives = 46/98 (46%)
Query: 192 SAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--IVFI 249
+A GV D R+ + A V+S R V VDE H + ++ L ++E+ ++FI
Sbjct: 94 AASHGGVDDTRELRDRAFYAPVQSRYR-VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152
Query: 250 GATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
ATTE P L T + SR L P + LL R
Sbjct: 153 FATTE-PEKVLPT-IRSRTHHYPFRLLPPRTMRALLAR 188
Score = 52 (23.4 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 27/97 (27%), Positives = 38/97 (39%)
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRA----GEEHYNLISALHKSMRGNDADAAIYWLA 412
G SP L LD H+ Y RA G LI ++ DA A +
Sbjct: 210 GGSPRDTLSVLDQLLAGAADTHVTYTRALGLLGVTDVALIDDAVDALAACDAAALFGAIE 269
Query: 413 RMLEGGEQPLYIARRLV-RFASEDVGLADPLALNQAV 448
+++GG P A L+ RF V + P A ++ V
Sbjct: 270 SVIDGGHDPRRFATDLLERFRDLIVLQSVPDAASRGV 306
>TIGR_CMR|BA_4703 [details] [associations]
symbol:BA_4703 "ATP-dependent protease LonB" species:198094
"Bacillus anthracis str. Ames" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030436 "asexual sporulation" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 PANTHER:PTHR10046 HSSP:P08177
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
InterPro:IPR014251 TIGRFAMs:TIGR02902 RefSeq:NP_846916.1
RefSeq:YP_021351.1 RefSeq:YP_030615.1 ProteinModelPortal:Q81LC0
IntAct:Q81LC0 DNASU:1083686 EnsemblBacteria:EBBACT00000010075
EnsemblBacteria:EBBACT00000014143 EnsemblBacteria:EBBACT00000022575
GeneID:1083686 GeneID:2816064 GeneID:2851723 KEGG:ban:BA_4703
KEGG:bar:GBAA_4703 KEGG:bat:BAS4368
BioCyc:BANT260799:GJAJ-4423-MONOMER
BioCyc:BANT261594:GJ7F-4571-MONOMER Uniprot:Q81LC0
Length = 557
Score = 112 (44.5 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
PL+E++RP + D+VGQ+ + L++A+C +I +GPPG GKT A+ ++
Sbjct: 59 PLAEKVRPTSFLDIVGQEDGIKS---LKAALCGPNPQHVIIYGPPGVGKTAAARLVL 112
Score = 58 (25.5 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 249 IGATTENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
+GATT +P I P + SRC + L +++ + K A D V +G +E+
Sbjct: 242 VGATTRSPEE--IPPAIRSRCLEVFFRELDTEEIQKVAKNAADKVE----MQIGENGIEM 295
Query: 308 NHDAIEFLCSNCDGDARVALNALEISA 334
I N R A+N ++ISA
Sbjct: 296 ----IGMYARN----GREAINLVQISA 314
Score = 53 (23.7 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 220 VLFVDEVHRFNKSQQDSFLPVIEDGSI 246
+LF+DE+ + Q + L V+ED +
Sbjct: 183 ILFIDEIGELHPIQMNKMLKVLEDRKV 209
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 53/225 (23%), Positives = 93/225 (41%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
S T + P E+ RP ++D++ +LS ++ + +RLP ++F+GPPGTGKT
Sbjct: 5 SKTQPQARNLPWVEKYRPQTLDDLISHQDILST---IQKFISEDRLPHLLFYGPPGTGKT 61
Query: 173 TLAKAIVNSVAVSYKF--VCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFV-DEV 226
+ A + +F + L S G+ VR + R K L + DE
Sbjct: 62 STILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEA 121
Query: 227 HRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLK 286
+ Q++ VIE + N +I L SRC PL + + L+
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLE 181
Query: 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ + +++ D ++ + + GD R +LN L+
Sbjct: 182 HVIQQES-----------IDITPDGMKAIVTLSTGDMRRSLNILQ 215
>TIGR_CMR|SPO_3115 [details] [associations]
symbol:SPO_3115 "Holliday junction DNA helicase RuvB"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255 HOGENOM:HOG000218623
KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080 PANTHER:PTHR13779:SF2
TIGRFAMs:TIGR00635 RefSeq:YP_168318.1 ProteinModelPortal:Q5LNT8
SMR:Q5LNT8 GeneID:3194519 KEGG:sil:SPO3115 PATRIC:23379675
Uniprot:Q5LNT8
Length = 341
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 38/121 (31%), Positives = 60/121 (49%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNR-----LPSIIFWGPPGTGKTTLAKAIVNSV 182
+RP +++ +GQ + LR V S R + +F GPPG GKTTLA+ + +
Sbjct: 21 LRPQALDEFIGQ---AEARANLRIFVQSARQRGEAMDHTLFHGPPGLGKTTLAQIMAREL 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V+++ +TSG V D + R VLF+DE+HR N + ++ P +E
Sbjct: 78 GVNFR------MTSG--PVLAKAGDLAAILTNLEARDVLFIDEIHRLNPAVEEVLYPAME 129
Query: 243 D 243
D
Sbjct: 130 D 130
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 136 (52.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 60/230 (26%), Positives = 101/230 (43%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTL----AKAI 178
L+ + RP ++VVGQ H+L+ L +A+ NRL + +F G G GKTT+ AK +
Sbjct: 6 LARKWRPTRFSEVVGQSHVLTA---LENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGL 62
Query: 179 -----VNSVAVSYKFVCLSAVTSGVKDV-------RDAVEDARKL------RVKSNKRTV 220
+ + C D+ R VED R+L + + V
Sbjct: 63 NCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLKP 278
+DEVH ++ ++ L +E+ + F+ ATT+ P +T +LSRC L P+
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTD-PQKLPVT-ILSRCLQFHLKPI-- 178
Query: 279 HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+V+++ L K + ++ + A+ L DG R AL+
Sbjct: 179 ---------SVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALS 219
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 136 (52.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 60/230 (26%), Positives = 101/230 (43%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTL----AKAI 178
L+ + RP ++VVGQ H+L+ L +A+ NRL + +F G G GKTT+ AK +
Sbjct: 6 LARKWRPTRFSEVVGQSHVLTA---LENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGL 62
Query: 179 -----VNSVAVSYKFVCLSAVTSGVKDV-------RDAVEDARKL------RVKSNKRTV 220
+ + C D+ R VED R+L + + V
Sbjct: 63 NCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKV 122
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLKP 278
+DEVH ++ ++ L +E+ + F+ ATT+ P +T +LSRC L P+
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTD-PQKLPVT-ILSRCLQFHLKPI-- 178
Query: 279 HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+V+++ L K + ++ + A+ L DG R AL+
Sbjct: 179 ---------SVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALS 219
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 53/221 (23%), Positives = 92/221 (41%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP ++D++ + ++S ++ R + +LP ++F+GPPGTGKT+ A +
Sbjct: 12 PWVEKYRPSGLDDLISHEEIIS--TITRF-ISRKQLPHLLFYGPPGTGKTSTILACARQL 68
Query: 183 --AVSYKFVCLSAVTS---GVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDS 236
+K + L S G+ VR + + R + + ++ +DE Q++
Sbjct: 69 YSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNA 128
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
+IE + N +I L SRC PL D + L
Sbjct: 129 LRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQ-----------DQMMPRL 177
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
K + V++ D L + GD R LN L+ S + A
Sbjct: 178 EKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQ-STVMA 217
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 57/224 (25%), Positives = 93/224 (41%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P AP E+ RP N++DVV Q +++ +LR V LP+++ +GPPGTGKT+ A
Sbjct: 28 PPAPWVEKYRPRNVDDVVEQSEVVA---VLRKCVEGGDLPNMLLYGPPGTGKTSTILAAS 84
Query: 180 NSV-AVSYKFVCLSAVTS---GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVH 227
+ +K L S G+ VR +++ +L S + ++ +DE
Sbjct: 85 RQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEAD 144
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
+ Q + +E S N +I P+ SRC L V LK
Sbjct: 145 SMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKY 204
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ + G ++E DA + + GD R A+ L+
Sbjct: 205 ICE---------MEGVKIE--DDAYKSIVKISGGDLRRAITTLQ 237
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 60/226 (26%), Positives = 104/226 (46%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RP ++DV QDH + L R+ SN LP ++F+GPPGTGKT+ LAK++
Sbjct: 35 PWVEKYRPKTLDDVAAQDH--TTKVLQRTLQASN-LPHMLFYGPPGTGKTSTILALAKSL 91
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+ + L+A G+ VR+ V+ RV+ + T L + F K F
Sbjct: 92 FGPALYRSRILELNASDERGIGIVREKVKGFA--RVQLSHPTGL---DAEYFEKYPCPPF 146
Query: 238 -LPVIEDGSIVFIGATTE----NPSFHLITPLLSRCRVLT--LNPLKPHDVEILLKRAVD 290
+ ++++ + A + + IT C +T + PL + K +D
Sbjct: 147 KIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFK-PLD 205
Query: 291 DVNNG--LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+ G L++ ++ + + ++ L S DGD R A+ L+ +A
Sbjct: 206 NSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAA 251
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 95 (38.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSV 182
L + RP +++VGQ+ ++ +L++AV + ++ + +F GP GTGKTT AK + +V
Sbjct: 5 LYRKWRPKTFSEIVGQETIVK---ILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAV 61
Score = 84 (34.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+N+ ++ F +A G+ ++R+ + ++ KL K V +DEVH ++ L
Sbjct: 81 INNQSLLNVFEIDAASNRGIDEIRE-LRESIKLVPAQGKYKVYIIDEVHMLTNEAFNALL 139
Query: 239 PVIEDGS--IVFIGATTENPSFHLI-TPLLSRCR 269
+E+ ++FI ATTE F+ + ++SRC+
Sbjct: 140 KTLEEPPEHVIFILATTE---FNKVPVTIVSRCQ 170
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 52/224 (23%), Positives = 101/224 (45%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTV----------LFVDEVH 227
+ + L+A G++ VR+ V++ +L V ++ + + +DE
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEAD 155
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
+ Q + +E S N +I PL SRC PL +I +R
Sbjct: 156 SMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD---KIQQQR 212
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+D + V+++ + I +L +GD R A+ L+
Sbjct: 213 LLDIADK--------EHVKISDEGIAYLVKVSEGDLRKAITFLQ 248
>TIGR_CMR|GSU_1077 [details] [associations]
symbol:GSU_1077 "Holliday junction DNA helicase RuvB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006310 GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 RefSeq:NP_952130.1
ProteinModelPortal:P61532 SMR:P61532 GeneID:2686958
KEGG:gsu:GSU1077 PATRIC:22024920
BioCyc:GSUL243231:GH27-1079-MONOMER Uniprot:P61532
Length = 338
Score = 128 (50.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 55/211 (26%), Positives = 93/211 (44%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP + D +GQ+ + A L ++ +GPPG GKTTLA I + V+
Sbjct: 20 LRPRALEDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLGKTTLANIIACEMGVN 79
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
K TSG V + D + VLF+DE+HR + ++ P +ED
Sbjct: 80 IKS------TSG--PVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAMEDFQ 131
Query: 246 I-VFIG----ATT---ENPSFHLITPLLSRCRVLTLNPLKPH-DVEILLKRAVD-DVNNG 295
+ + IG A T + P F L+ +R +L+ +PL+ V L+ D +++
Sbjct: 132 LDIIIGQGPSARTIKLDLPRFTLVGAT-TRAGLLS-SPLRDRFGVISRLEFYTDAELSTI 189
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
+++S +++ D L G R+A
Sbjct: 190 VTRSAHILDIQIEPDGARELARRSRGTPRIA 220
>TIGR_CMR|CHY_0329 [details] [associations]
symbol:CHY_0329 "ATP-dependent protease LonB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0030436 "asexual sporulation"
evidence=ISS] InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008268 InterPro:IPR008269
InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362 PROSITE:PS01046
PROSITE:PS50045 SMART:SM00382 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067 PANTHER:PTHR10046
RefSeq:YP_359192.1 ProteinModelPortal:Q3AF92 STRING:Q3AF92
GeneID:3728068 KEGG:chy:CHY_0329 PATRIC:21273827
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
BioCyc:CHYD246194:GJCN-330-MONOMER InterPro:IPR014251
TIGRFAMs:TIGR02902 Uniprot:Q3AF92
Length = 547
Score = 114 (45.2 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E+ RP N ++++GQ+ + L++A+C +I +GPPG GKT A+ ++
Sbjct: 59 PLAEKTRPENFSEIIGQEEGIEA---LKAALCGPNPQHVILYGPPGVGKTAAARLVLKEA 115
Query: 183 AVS 185
S
Sbjct: 116 IKS 118
Score = 60 (26.2 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 22/99 (22%), Positives = 44/99 (44%)
Query: 205 VEDARKLRVKSNKRTVLFVDEVHRFNKSQQ--DSFLPVIEDG---SIVFIGATTENPSFH 259
V+ + L+V +++ +F++ + F+++ + + + G IGATT P
Sbjct: 195 VQMNKLLKVLEDRK--VFLESAYYFSENPEIPQHIHEIFQKGLPADFRLIGATTRKPE-E 251
Query: 260 LITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
L L SRC + PL ++ + + A + L K
Sbjct: 252 LPPALRSRCVEIFFKPLGDEEIREIAQNAAKKIGISLGK 290
Score = 59 (25.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT--TENP 256
+LF+DE+ + Q + L V+ED + A +ENP
Sbjct: 183 ILFIDEIGELHPVQMNKLLKVLEDRKVFLESAYYFSENP 221
>TIGR_CMR|CJE_1554 [details] [associations]
symbol:CJE_1554 "Holliday junction DNA helicase RuvB"
species:195099 "Campylobacter jejuni RM1221" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006310 GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 RefSeq:YP_179537.1
ProteinModelPortal:Q5HT48 SMR:Q5HT48 STRING:Q5HT48 GeneID:3232182
KEGG:cjr:CJE1554 PATRIC:20044900 OMA:DANIKTT
BioCyc:CJEJ195099:GJC0-1584-MONOMER Uniprot:Q5HT48
Length = 335
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 47/161 (29%), Positives = 76/161 (47%)
Query: 128 MRPVNINDVVGQDHLLSP-NSLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP N + +GQ+ + N + +A N L I+F GP G GKTTLA I + +
Sbjct: 20 LRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGAN 79
Query: 186 YKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG 244
K + SG D + ++ +LF+DE+HR + + ++ P +ED
Sbjct: 80 IKTTAAPMIEKSG---------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDY 130
Query: 245 SI-VFIG----ATT---ENPSFHLITPLLSRCRVLTLNPLK 277
+ + IG A T + P F LI +R +L+ NPL+
Sbjct: 131 RLDIIIGSGPAAQTIKIDLPKFTLIGAT-TRAGMLS-NPLR 169
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 120 (47.3 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 41/167 (24%), Positives = 78/167 (46%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + L+A G++ VR+ V++ +L V ++ ++ +DE
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL 276
+ Q + +E S N +I PL SRC PL
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 91 (37.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 37/141 (26%), Positives = 67/141 (47%)
Query: 193 AVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--IVFIG 250
A +GV D+R+ E+ + L + + + +DEVH + + ++ L +E+ + FI
Sbjct: 96 ASNTGVDDIRELRENVKYLPSRLRYK-IFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154
Query: 251 ATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD 310
ATTE P IT +LSRC+ + V L+ VD G+S ++ +
Sbjct: 155 ATTE-PHKLPIT-ILSRCQRFDFRRIPLAKVVARLRYIVD--REGIS---------ISDE 201
Query: 311 AIEFLCSNCDGDARVALNALE 331
++ + DG R +L+ L+
Sbjct: 202 SLAVVARKGDGSMRDSLSVLD 222
Score = 83 (34.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP +D+ GQ+H+ + L++A+ S R+ + +F G G GKT+ A+ + ++
Sbjct: 6 LARKWRPQTFSDLTGQEHV---SRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKAL 62
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 192 SAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--IVFI 249
+A +GV D+RD ++ AR V + + V +DEVH + + ++ L +E+ + FI
Sbjct: 133 AASRTGVADMRDLLDSARYGPVSARYK-VYIIDEVHMLSNASFNALLKTLEEPPPHLKFI 191
Query: 250 GATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH 309
ATTE +T +LSRC+ L L + L R + +V ++S G V+
Sbjct: 192 FATTEIRKVP-VT-VLSRCQRFDLKRLDSGE----LSRHLGNV----AQSEGAN---VSE 238
Query: 310 DAIEFLCSNCDGDARVALNALE 331
+A+ + +G R L+ L+
Sbjct: 239 EALALIARAAEGSVRDGLSLLD 260
Score = 60 (26.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP D++GQ+ ++ L +A + R+ + G G GKTT A+ + +
Sbjct: 32 LARKYRPRRFEDLIGQEAMVRT---LSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 391 LISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLA 439
L+ A+ K++ G DA A+ + + GG P I + ++ A+ D+ +A
Sbjct: 289 LLDAVEKAV-GGDAKGALAEVREQVAGGADPAVILKDILDIAA-DISVA 335
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 59/226 (26%), Positives = 99/226 (43%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E RP ++ V Q+ S +L+ + SN LP ++F+G PGTGKT+ L++ +
Sbjct: 20 PWVELYRPKTLDQVSSQE---STVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSREL 76
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRT--------VLFVDEVHRF 229
+ + + L+A G+ +R+ V+ K V +NK ++ +DE
Sbjct: 77 FGPQLMKSRVLELNASDERGISIIREKVKSFAKTTV-TNKVDGYPCPPFKIIILDEADSM 135
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA- 288
+ Q + +E + + N +I PL SRC PL D E ++KR
Sbjct: 136 TQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPL---DNENMVKRLE 192
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+ +S G V + +E CS GD R A+ L+ +A
Sbjct: 193 FIAADQAVSMEPG-----VVNALVE--CSG--GDMRKAITFLQSAA 229
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 56/239 (23%), Positives = 103/239 (43%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
+TTA ++P E+ RP ++++V + ++ L + + LP ++F+GPPGTGKT
Sbjct: 23 TTTASNLPWV---EKYRPSKLDELVAHEQIVKT---LTKFIENRTLPHLLFYGPPGTGKT 76
Query: 173 TLAKAIVNSVAVSYKFVCL-----SAVTSGVKDVRDAVEDARKLR------VKSNKRTVL 221
T A + K + ++ G+ VR+ + + + + SN TV
Sbjct: 77 TTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVP 136
Query: 222 F----VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
F +DE K Q++ VIE + N ++ + SRC PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPL- 195
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336
D ++++ R L V ++++ D + L GD R +N L+ +A++
Sbjct: 196 --DQKLIVPR--------LEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMS 244
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 44/173 (25%), Positives = 82/173 (47%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL----AKAI 178
P E+ RP +++V Q+ +++ +L+ ++ LP+++F+GPPGTGKT+ A+ +
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVA---VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 90
Query: 179 VNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNK---RT-----VLFVDEVHRF 229
+ + L+A G++ VR+ V+ +L V + +T ++ +DE
Sbjct: 91 YGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSM 150
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
+ Q + +E S N +I PL SRC PL +DV+
Sbjct: 151 TSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLA-NDVQ 202
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 58/223 (26%), Positives = 97/223 (43%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P + RP ++DV Q+ ++S L+ ++ + LP ++F+GPPGTGKT+ AI +
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISA---LKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDI 67
Query: 183 ----AVSYKFVCLSAVTS-GVKDVRDAVEDARKLRV-KSNKRT--------VLFVDEVHR 228
+ + + L+A G++ VR +++ V K+ T ++ +DE
Sbjct: 68 YGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADS 127
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
Q + IE S N +I PL SRC PL D ++R
Sbjct: 128 MTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPL---DTVATIERL 184
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+S+ G E + AI+ + SN GD R A+ L+
Sbjct: 185 -----KFISQQEGIKCEESVYQAIQVV-SN--GDMRKAITYLQ 219
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 127 (49.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 58/221 (26%), Positives = 102/221 (46%)
Query: 129 RPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
RP DVVGQ+H+ L++A+ + + +F GP GTGKT+ AK +V +
Sbjct: 11 RPQRFEDVVGQEHI---TKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHA 67
Query: 188 FV---CLS-AVTSGVKD--VRDAVE-DARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V C A G+ + + D +E DA R + D+V +F S + +
Sbjct: 68 PVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIR--DKV-KFAPSAVTYKVYI 124
Query: 241 IEDGSIVFIGA------TTENPSFHLITPLLS----RCRVLTLNPLKPHDVEILLKRAVD 290
I++ ++ IGA T E P H I L + + + ++ + D + + +A+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAI- 183
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
V ++K V +++V ++E + S DG R AL+ L+
Sbjct: 184 -VGR-MNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLD 222
Score = 39 (18.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 392 ISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLV 429
I L KS+ + A+ L +L+ G+ P + ++
Sbjct: 249 IGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286
>DICTYBASE|DDB_G0287165 [details] [associations]
symbol:DDB_G0287165 "spastin-like protein"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008568 "microtubule-severing ATPase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR007330 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0287165 GO:GO:0016021 GO:GO:0005524 GO:GO:0005737
Pfam:PF04212 eggNOG:COG0464 HSSP:O75351 GO:GO:0008568 GO:GO:0005874
EMBL:AAFI02000098 KO:K13254 HAMAP:MF_03021 RefSeq:XP_637373.1
ProteinModelPortal:Q54KQ7 SMR:Q54KQ7 EnsemblProtists:DDB0231319
GeneID:8625995 KEGG:ddi:DDB_G0287165 InParanoid:Q54KQ7 OMA:TERSSNE
ProtClustDB:CLSZ2729356 Uniprot:Q54KQ7
Length = 655
Score = 121 (47.7 bits), Expect = 0.00058, P = 0.00058
Identities = 43/167 (25%), Positives = 77/167 (46%)
Query: 73 FHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVN 132
+ Q SS + + +PSP + +D + + + + +R PV
Sbjct: 324 YGLQKSLSSTTLSLKKSSNSTNFQQPSPPSMVIPDIKGIDKSMVTLIMNE-IMDRKNPVK 382
Query: 133 INDVVGQDHLLSPNSLLRSAVCSNRLPSI-----------IFWGPPGTGKTTLAKAIVNS 181
+DVVG D + SL+ S + N P + + +GPPG GKT +AKA+
Sbjct: 383 WDDVVGLDKV--KQSLMESVILPNLRPDVFTGLRAPPKGLLLFGPPGNGKTMIAKAVAYE 440
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKL-RVKSN-KRTVLFVDEV 226
V++ + S++TS K V D + R L V ++ + +++F+DE+
Sbjct: 441 SKVTFFSISSSSLTS--KYVGDGEKLVRALFAVATHFQPSIIFIDEI 485
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 120 (47.3 bits), Expect = 0.00059, P = 0.00059
Identities = 66/300 (22%), Positives = 125/300 (41%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIV--- 179
L + R N + +VGQ+ + L+ AV ++ + +F GP GTGKT++AK
Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKT---LKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 180 ---NSVA---VSYKFVCLSAVTSG-VKDV--RDA-----VEDARKLRVKSNKRTVLFVDE 225
N V + ++C AVT G ++DV DA V++ R++R KS +
Sbjct: 62 NCPNQVGGEPCNNCYIC-QAVTDGSLEDVIEMDAASNNGVDEIREIRDKST-----YAPS 115
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPS----FHLITPLLSRCRVLTLNPLKPHDV 281
+ R+ D + ++ G+ + T E P+ F L T L + L+ ++ +
Sbjct: 116 LARYKVYIIDE-VHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEF 174
Query: 282 EILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS-AITAAXX 340
+ + D+ + + + +A+E + +G R AL+ L+ + ++T
Sbjct: 175 KSI---KTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNE 231
Query: 341 XXXXXXXXXXXXXXSDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR 400
YVA ++ D +A C +L +D G+ ++ L +R
Sbjct: 232 LTTAISEEITGTISLSALDDYVAALSQQDVPKALSCLNLLFDN-GKSMTRFVTDLLHYLR 290
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 119 (46.9 bits), Expect = 0.00078, P = 0.00077
Identities = 52/218 (23%), Positives = 98/218 (44%)
Query: 129 RPVNINDVVGQDHLLSP--NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
RP DVVGQ H+ N+LL+ V + +F GP GTGKTT+AK ++ +
Sbjct: 11 RPQKFEDVVGQKHVTKTLQNALLQEKVSH----AYLFSGPRGTGKTTIAKVFAKAINCEH 66
Query: 187 KFVC--LSAVTSGVKDVRDAVEDARKLRVKSNKRT--VLFVDEVHRFNKSQQDSFLPVIE 242
V + S + + ++ D ++ SN + + + ++ S + + +I+
Sbjct: 67 APVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIID 126
Query: 243 DGSIVFIGA------TTENPSFHLITPLLSRCRVLTLNPL---KPHDVEILLKRAVDDVN 293
+ ++ +GA T E P H+I +L+ + P + E K +V+D+
Sbjct: 127 EVHMLSMGAFNALLKTLEEPPGHVIF-ILATTEPHKIPPTIISRCQRFEFR-KISVNDIV 184
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
LS V +V +A++ + +G R AL+ ++
Sbjct: 185 ERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLID 222
>TIGR_CMR|CHY_0040 [details] [associations]
symbol:CHY_0040 "putative ATP-dependent protease La"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006508 "proteolysis" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006508 GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
InterPro:IPR025943 PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067
PANTHER:PTHR10046 KO:K01338 HOGENOM:HOG000054711
ProtClustDB:CLSK873492 RefSeq:YP_358912.1 ProteinModelPortal:Q3AG22
STRING:Q3AG22 MEROPS:S16.005 GeneID:3728432 KEGG:chy:CHY_0040
PATRIC:21273277 OMA:PENAQTL BioCyc:CHYD246194:GJCN-40-MONOMER
InterPro:IPR014252 TIGRFAMs:TIGR02903 Uniprot:Q3AG22
Length = 632
Score = 85 (35.0 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAK 176
+RP + +++VGQ+ + +LL A S+ P I+ +GPPG GKTT A+
Sbjct: 159 LRPRSFSEIVGQERAI--RALL--AKLSSPFPQHILLYGPPGVGKTTAAR 204
Score = 81 (33.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 39/143 (27%), Positives = 63/143 (44%)
Query: 203 DAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP-VIEDGS---IVFIGATTENPSF 258
D + + L+V +KR V F + + ++ + E+G+ + IGATT +P
Sbjct: 289 DPLLQNKLLKVLEDKR-VYFDSAYYDPDDPNVPQYIKKIFEEGAPADFILIGATTRSPEE 347
Query: 259 HLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV----GGTRVEVNHDAIE 313
I P L SRC + PL P +++ ++ +A +N L+ V G VE A+
Sbjct: 348 --INPALRSRCAEIFFEPLGPAEIKEIVLKAAQKLNVKLAPDVPELIAGYTVE-GRKAVN 404
Query: 314 FLCSNCDGDARVALNALEISAIT 336
L DG A E A+T
Sbjct: 405 ILA---DGYAIARFKNPEGDALT 424
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 558 519 0.00089 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 122
No. of states in DFA: 620 (66 KB)
Total size of DFA: 294 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.77u 0.41s 39.18t Elapsed: 00:00:04
Total cpu time: 38.80u 0.41s 39.21t Elapsed: 00:00:04
Start: Fri May 10 11:24:30 2013 End: Fri May 10 11:24:34 2013
WARNINGS ISSUED: 1