BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008664
(558 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449460076|ref|XP_004147772.1| PREDICTED: ATPase WRNIP1-like [Cucumis sativus]
Length = 513
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/563 (69%), Positives = 452/563 (80%), Gaps = 57/563 (10%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
MEQL++MGFPDELAA+ALAATGGKSTLKATEWIL+HKSS+ + P PN +
Sbjct: 1 MEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPS---------PKPNLPISS 51
Query: 63 NP-VQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPH 121
NP +QPKLDRFFHFQ +P +A
Sbjct: 52 NPNLQPKLDRFFHFQPRPPPPSA------------------------------------- 74
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
SERMRP I+DVVGQDHLL+ NS+LRS++ NRLPSI+ WGPPGTGKT++AKAIV S
Sbjct: 75 ---SERMRPRTIDDVVGQDHLLAKNSILRSSLDCNRLPSIVLWGPPGTGKTSIAKAIVGS 131
Query: 182 VAV---SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+ S++FV LSAVTSGVKDVRDAVE+ARK+R+K+NKRTVLF+DEVHRFNKSQQDSFL
Sbjct: 132 TSSFSQSFRFVSLSAVTSGVKDVRDAVEEARKIRIKNNKRTVLFLDEVHRFNKSQQDSFL 191
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
PVIEDGSI+F+GATTENPSFHLITPLLSR RVLTLNPLKPH V ++LKRAVDD + GL++
Sbjct: 192 PVIEDGSIIFLGATTENPSFHLITPLLSRSRVLTLNPLKPHHVTLILKRAVDDSDKGLAR 251
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
++ V++ DAI+F+ +NCDGDAR ALNALEISAITAA R ++ + ED +
Sbjct: 252 TIS-MGVQIGEDAIDFIAANCDGDARTALNALEISAITAAARTNSVQIDDRNVEDPDENT 310
Query: 359 SPY---VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+ + VA+VTLDD KEA QCKH+AYD+AGEEHYNLISALHKSMRG DADA+IYWLARML
Sbjct: 311 TNFESSVAVVTLDDVKEALQCKHIAYDKAGEEHYNLISALHKSMRGCDADASIYWLARML 370
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHF+GMPECNVILAQCVAYLAL
Sbjct: 371 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLAL 430
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQ 535
APKSI++YRA+GAA+KV+RESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD+PSA Q
Sbjct: 431 APKSIAVYRAMGAAEKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSATQ 490
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
SFLPPSL+GYKFL+WP S T K
Sbjct: 491 SFLPPSLKGYKFLNWPDSEDTKK 513
>gi|224113871|ref|XP_002316599.1| predicted protein [Populus trichocarpa]
gi|222859664|gb|EEE97211.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/581 (69%), Positives = 452/581 (77%), Gaps = 55/581 (9%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
MEQLLSMGFP ELAA+ALAATGGKST+KATEWILS S P PN +PN
Sbjct: 1 MEQLLSMGFPSELAAQALAATGGKSTVKATEWILSQTSH------------PHPNNSPNG 48
Query: 63 NPVQ-PKLDRFFHF-----QTKPSSAAANAVQEKEKDR---------EIEPSPLFKRLKT 107
+ Q PKLDRFFHF + +PSS + + Q + P KR K
Sbjct: 49 SSFQQPKLDRFFHFPSSKPKQEPSSPSNSPTQTTTAPPPPPPHHQVLSAQTPPPSKRPK- 107
Query: 108 RHDVDSTTALHVPH-------APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
V + + PH PL+ERMRP I+DV+GQD LLS NSLLRSA+ +R+PS
Sbjct: 108 ---VFAPSPPSNPHNHTISNDEPLAERMRPRTIDDVIGQDLLLSQNSLLRSAIRCSRIPS 164
Query: 161 IIFWGPPGTGKTTLAKAIVNSV----AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSN 216
II WGPPGTGKT++A+AIV S + SY+FV LSAVT GVKD RDA EDARK ++K++
Sbjct: 165 IILWGPPGTGKTSIARAIVTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLKNS 224
Query: 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL 276
KRTVLF+DEVHRFNKSQQDSFLPVIEDG+IVFIGATTENPSFHL+TPLLSRCRVLTL+PL
Sbjct: 225 KRTVLFLDEVHRFNKSQQDSFLPVIEDGTIVFIGATTENPSFHLVTPLLSRCRVLTLSPL 284
Query: 277 KPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336
KPH V+ +LKRAV+D + GLSKS+G V+V+ DA+EFL +NCDGDARVALNALEISA T
Sbjct: 285 KPHHVQTILKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCDGDARVALNALEISAAT 344
Query: 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALH 396
AA RV SDG +A V LDDAKEA Q KHLAYDRAGEEHYNLISALH
Sbjct: 345 AAARV------------GSDG-DLRLASVALDDAKEALQSKHLAYDRAGEEHYNLISALH 391
Query: 397 KSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHF 456
KSMRG+DADA+IYWL RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAV+CYQACHF
Sbjct: 392 KSMRGSDADASIYWLVRMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVACYQACHF 451
Query: 457 LGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMK 516
LGMPECNVILAQCVAYLALAPKSIS+YRA+GAAQKV+RESVGQNEGVPLHLRNAPTKLMK
Sbjct: 452 LGMPECNVILAQCVAYLALAPKSISVYRAMGAAQKVVRESVGQNEGVPLHLRNAPTKLMK 511
Query: 517 EIGYGKGYIYTPDDPSAKQSFLPPSLEGYKFLDWPKSNTTD 557
E+GYGK YIYTPD+P+A QSFLPPSL+GYKFLDWP SN +
Sbjct: 512 ELGYGKDYIYTPDNPTANQSFLPPSLQGYKFLDWPASNANN 552
>gi|357495603|ref|XP_003618090.1| ATPase WRNIP1 [Medicago truncatula]
gi|355519425|gb|AET01049.1| ATPase WRNIP1 [Medicago truncatula]
Length = 551
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/568 (67%), Positives = 454/568 (79%), Gaps = 31/568 (5%)
Query: 1 MEMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNP 60
MEM+QLLSMGFPDELAA+ALAATGGKST+KATEWIL+HK +T + P+ +P
Sbjct: 1 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPPNST--------IHTPSSSP 52
Query: 61 NQNPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVP 120
+ + QPKLDRFF +P A Q +E ++ + SP ++ K T+ P
Sbjct: 53 S-SAFQPKLDRFFQTPQQPIQAEQQQQQTEEPNKRTKLSPT-QQNKPSFFFKPTSMKQQP 110
Query: 121 --HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
H PL ER+RP +++VVGQDHLLS NS+LRS++ RLPSI+ WGPPGTGKTT+AKAI
Sbjct: 111 QTHEPLYERLRPRTLDEVVGQDHLLSTNSILRSSIQRKRLPSILLWGPPGTGKTTIAKAI 170
Query: 179 VNSVAVS-----YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
VNS + + Y+FV LSAVTSGVKDVR+AV++ARK+RVK+N+ TVLFVDEVHRFNKSQ
Sbjct: 171 VNSSSTTKDSPLYRFVSLSAVTSGVKDVREAVDEARKVRVKTNQTTVLFVDEVHRFNKSQ 230
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QDSFLPVIEDGSIVF+GATTENPSFHLITPLLSRCRVLTLNPL+PH + +LLKRAV+D
Sbjct: 231 QDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLILLLKRAVNDTE 290
Query: 294 NGLSKSVG----GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
GL KS+G V V D ++F+ +NCDGDARVALN LEI+ + AA RV
Sbjct: 291 KGLVKSLGFGSCKVDVSVGEDVVDFVANNCDGDARVALNVLEIAGVNAAARV-------- 342
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
E +S+ C V+++DAKEA QCKHLAYD+AGEEHYNLISALHKSMRG+DADAAIY
Sbjct: 343 --EHDSEECQDVAVSVSVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIY 400
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WLARML+GGE+PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHF+GMPECNVILAQC
Sbjct: 401 WLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQC 460
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
VAYLALAPKSI++YRA+GAA+K +RESVGQNEGVPLHLRNAPTKLMKE+GYGKGYIYTPD
Sbjct: 461 VAYLALAPKSIAVYRAMGAAEKAVRESVGQNEGVPLHLRNAPTKLMKEVGYGKGYIYTPD 520
Query: 530 DPSAKQSFLPPSLEGYKFLDWPKSNTTD 557
+PSA QSFLPPSL+G+KFL WP + ++
Sbjct: 521 NPSATQSFLPPSLQGFKFLHWPDRDPSE 548
>gi|225464722|ref|XP_002264062.1| PREDICTED: ATPase WRNIP1-like [Vitis vinifera]
Length = 534
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/556 (71%), Positives = 449/556 (80%), Gaps = 29/556 (5%)
Query: 1 MEMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNP 60
ME EQLLSMGFPD+LA++ALAATGGKS LKATEWIL S + T +P
Sbjct: 1 MEREQLLSMGFPDDLASQALAATGGKSILKATEWILGRNKSDSQTPDENPNS------SP 54
Query: 61 NQNPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVP 120
+ +P QPKLDRFFHFQ+KPS+ +Q++ D PSP KRL+ A + P
Sbjct: 55 SPSPFQPKLDRFFHFQSKPSNPPQ--IQKQHCDTPSLPSPPSKRLRLE-------AENSP 105
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PLSERMRP ++DVVGQDHLLS SLLRSA+ SNRLPSII WGPPGTGKT++AKAIVN
Sbjct: 106 HQPLSERMRPRTVDDVVGQDHLLSHKSLLRSAIDSNRLPSIILWGPPGTGKTSIAKAIVN 165
Query: 181 SVA--VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSN---KRTVLFVDEVHRFNKSQQD 235
S + SY+FV LSAVT+GVKDVRD VE+ARK++V N KRT+LFVDEVHRFNKSQQD
Sbjct: 166 SSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQQD 225
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL+P V LL RAV D G
Sbjct: 226 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLNRAVADTGRG 285
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
L+ SVGG +EV+ DAI+FL S+CDGDARVALNALEISA+TAA R E E+
Sbjct: 286 LAWSVGGASIEVSDDAIDFLSSHCDGDARVALNALEISAVTAAAR-------HGENLVEN 338
Query: 356 DGC-SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
+G S V VTLDDAKEA Q KHLAYD+AGEEHYNLISALHKSMRG+DADA+IYWLARM
Sbjct: 339 NGVGSSQVTTVTLDDAKEALQSKHLAYDKAGEEHYNLISALHKSMRGSDADASIYWLARM 398
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLA 474
LEGGE+PLYIARRL+RFASEDVGLADP+AL QAV+C QACHFLGMPECNV LAQCVAYLA
Sbjct: 399 LEGGEEPLYIARRLIRFASEDVGLADPIALVQAVACCQACHFLGMPECNVNLAQCVAYLA 458
Query: 475 LAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK 534
LAPKS+S+YRA+ AAQ+V+RESVGQNEGVPLHLRNAPTKLMKE+GYGKGYIY PD+PS+
Sbjct: 459 LAPKSVSVYRAILAAQEVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYPPDNPSSS 518
Query: 535 -QSFLPPSLEGYKFLD 549
Q++LPPSL+GYKFL+
Sbjct: 519 TQNYLPPSLQGYKFLN 534
>gi|356553438|ref|XP_003545063.1| PREDICTED: ATPase WRNIP1-like [Glycine max]
Length = 533
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/560 (67%), Positives = 444/560 (79%), Gaps = 37/560 (6%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
M+QLLSMGFPDELAA+ALAATGGKST+KATEWILSHK PN
Sbjct: 1 MQQLLSMGFPDELAAQALAATGGKSTVKATEWILSHK--------------------PNS 40
Query: 63 NPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIE------PSPLFKRLKTRHDVDSTTA 116
+ QPKLDRFFH Q++ + + PS FK +H
Sbjct: 41 STFQPKLDRFFHSQSQEHDEPSKRPKPSPSPSPSPAQPQHWPSFFFKIADKKH-----AN 95
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
H+ H PL ER+RP ++DVVGQ+HLL+PNSLLRSA+ NRLPSI+ WGPPGTGKTT+AK
Sbjct: 96 THI-HEPLYERLRPRTLDDVVGQEHLLAPNSLLRSAIQRNRLPSILLWGPPGTGKTTIAK 154
Query: 177 AIVNSV--AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQ 234
AIVNS SY+FV LSAVTSGVKDVRDAV++ARKLR+KSN+ TVLFVDEVHRFNKSQQ
Sbjct: 155 AIVNSTPSTNSYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQ 214
Query: 235 DSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
DSFLPVIEDGSIVF+GATTENPSFHLITPLLSRCRVLTLNPL+PH + +LL RAV +
Sbjct: 215 DSFLPVIEDGSIVFLGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVTHTDK 274
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354
GL +SVG V+V+ + ++F+ +NCDGDARVALNALEI+A+TAA R+ ++ +E
Sbjct: 275 GLMQSVG-VHVDVSEEVVDFISNNCDGDARVALNALEIAAVTAAARLQQGMELDLHTNEE 333
Query: 355 --SDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
D + +V++ DAKEA QCKH+AYD+AGEEHYN+ISALHKSMRG+DA+AAIYWLA
Sbjct: 334 CKDDVAAAAAVVVSVADAKEALQCKHVAYDKAGEEHYNVISALHKSMRGSDANAAIYWLA 393
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RMLEGGE+PLYIARRL+RFASEDVGLADPLALNQAVSCYQACHF+GMPECNVILAQCVAY
Sbjct: 394 RMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAY 453
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS 532
LALAPKS+++YRA+GAAQK +RES G NEGVPLHLRNAPTKLMK+IGYGKGYIYTPD+P+
Sbjct: 454 LALAPKSVAVYRAIGAAQKAVRESAGHNEGVPLHLRNAPTKLMKDIGYGKGYIYTPDNPT 513
Query: 533 AKQSFLPPSLEGYKFLDWPK 552
A Q++LPPSL G+KFLDWP+
Sbjct: 514 ATQTYLPPSLLGHKFLDWPE 533
>gi|297845668|ref|XP_002890715.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297336557|gb|EFH66974.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 525
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/559 (66%), Positives = 422/559 (75%), Gaps = 46/559 (8%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
MEQL+SMGF +LAAEAL ATGG S KAT+WILSH+SS +T
Sbjct: 1 MEQLVSMGFSSDLAAEALTATGGDSIQKATDWILSHRSSPQSTAT--------------- 45
Query: 63 NPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHA 122
+QPKLDRF K S K + E + R + S+ H H
Sbjct: 46 --LQPKLDRFLCLNPKTLSPVVGDDSSKRPNPETQIPVAADDSNKRPKLSSSR--HRQHQ 101
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLSERMRP ++DVVGQ+HLLSP SLLRSA+ SNRLPSI+FWGPPGTGKT++AK+++NS
Sbjct: 102 PLSERMRPRTLDDVVGQEHLLSPASLLRSAIKSNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 183 A--VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y+FV LSAVTSGVKDVRDAVE A++L ++ KRTVLF+DEVHRFNKSQQDSFLPV
Sbjct: 162 KDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGKKRTVLFMDEVHRFNKSQQDSFLPV 221
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDGSI+FIGATTENPSFHLITPLLSRCRVLTLNPLKP+ VE LL+RAVDD GLS SV
Sbjct: 222 IEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLSNSV 281
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
EV+ IEFL NCDGDARVALNALEISA A R SD
Sbjct: 282 -----EVDDSVIEFLAYNCDGDARVALNALEISATMATARA------------GSD---- 320
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
A+V++DDAKEA QCKHLAYD+AG++HYNLISALHKSMRG DA+AAIYWLARMLEGGE+
Sbjct: 321 --AVVSIDDAKEALQCKHLAYDKAGDQHYNLISALHKSMRGGDANAAIYWLARMLEGGEE 378
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRL+RFASED+GLADP AL QAV+CYQA HFLGMPECNVILAQC AYLALAPKS+
Sbjct: 379 PLYIARRLIRFASEDIGLADPSALTQAVACYQASHFLGMPECNVILAQCTAYLALAPKSV 438
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
++YRA+GAAQKV+++SVGQNEGVPLHLRNAPTKLMKE+GYGK YIY PDDPS A Q++L
Sbjct: 439 AVYRAIGAAQKVVKDSVGQNEGVPLHLRNAPTKLMKELGYGKEYIYPPDDPSSAAAQTYL 498
Query: 539 PPSLEGYKFLDWPKSNTTD 557
PPSL YKFL+WP + D
Sbjct: 499 PPSLLHYKFLEWPHGVSGD 517
>gi|449527091|ref|XP_004170546.1| PREDICTED: ATPase WRNIP1-like, partial [Cucumis sativus]
Length = 446
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/438 (77%), Positives = 388/438 (88%), Gaps = 7/438 (1%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV 184
SERMRP I+DVVGQDHLL+ NS+LRS++ NRLPSI+ WGPPGTGKT++AKAIV S +
Sbjct: 1 SERMRPRTIDDVVGQDHLLAKNSILRSSLDCNRLPSIVLWGPPGTGKTSIAKAIVGSTSS 60
Query: 185 ---SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S++FV LSAVTSGVKDVRDAVE+ARK+R+K+NKRTVLF+DEVHRFNKSQQDSFLPVI
Sbjct: 61 FSQSFRFVSLSAVTSGVKDVRDAVEEARKIRIKNNKRTVLFLDEVHRFNKSQQDSFLPVI 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDGSI+F+GATTENPSFHLITPLLSR RVLTLNPLKPH V ++LKRAVDD + GL++++
Sbjct: 121 EDGSIIFLGATTENPSFHLITPLLSRSRVLTLNPLKPHHVTLILKRAVDDSDKGLARTIS 180
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEV--KEVEQEDE-SDGC 358
V++ DAI+F+ +NCDGDAR ALNALEISAITAA R ++ + VE DE +
Sbjct: 181 -MAVQIGEDAIDFIAANCDGDARTALNALEISAITAAARTNSVQIDDRNVEDPDENTTNV 239
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
VA+VTLDD KEA QCKH+AYD+AGEEHYNLISALHKSMRG DADA+IYWLARMLEGG
Sbjct: 240 ESSVAVVTLDDVKEALQCKHIAYDKAGEEHYNLISALHKSMRGCDADASIYWLARMLEGG 299
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHF+GMPECNVILAQCVAYLALAPK
Sbjct: 300 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPK 359
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFL 538
SI++YRA+GAA+KV+RESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD+PSA QSFL
Sbjct: 360 SIAVYRAMGAAEKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSATQSFL 419
Query: 539 PPSLEGYKFLDWPKSNTT 556
PPSL+GYKFL+WP S T
Sbjct: 420 PPSLKGYKFLNWPDSEDT 437
>gi|15221721|ref|NP_173839.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
gi|2829884|gb|AAC00592.1| Hypothetical protein [Arabidopsis thaliana]
gi|332192391|gb|AEE30512.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
Length = 525
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/559 (65%), Positives = 424/559 (75%), Gaps = 46/559 (8%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
MEQL+SMGF +LAAEAL ATGG S KAT+WILSH+SS +T
Sbjct: 1 MEQLVSMGFSSDLAAEALTATGGDSIQKATDWILSHRSSPQSTAT--------------- 45
Query: 63 NPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHA 122
+QPKLDRF K + A K + + + RH + S++ H H
Sbjct: 46 --LQPKLDRFLRLHPKALAPAMGDDSSKRPNPKTQIHVAADDSNKRHKLSSSS--HRQHQ 101
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLSERMRP ++DVVGQDHLLSP+SLLRSAV SNRLPSI+FWGPPGTGKT++AK+++NS
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 183 A--VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y+FV LSAVTSGVKDVRDAVE A++L ++ KRTVLF+DEVHRFNKSQQD+FLPV
Sbjct: 162 KDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLPV 221
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDGSI+FIGATTENPSFHLITPLLSRCRVLTLNPLKP+ VE LL+RAVDD GL SV
Sbjct: 222 IEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLPNSV 281
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
EV+ IEFL +NCDGDARVALNALEISA A R
Sbjct: 282 -----EVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTD---------------- 320
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
A+V++DDAKEA QCKHLAYD+AGE+HYNLISALHKSMRG DA+AAIYWLARMLEGGE+
Sbjct: 321 --AVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEGGEE 378
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRL+RFASED+GLADP AL QAV+CYQA HFLGMPECNVILAQC AYLALAPKSI
Sbjct: 379 PLYIARRLIRFASEDIGLADPSALTQAVACYQASHFLGMPECNVILAQCTAYLALAPKSI 438
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
++YRA+GAAQKV+++SVGQNEGVPLHLRNAPTKLMKE+GYGK YIY P DPS A Q++L
Sbjct: 439 AVYRAIGAAQKVVKDSVGQNEGVPLHLRNAPTKLMKELGYGKEYIYPPSDPSSAAGQTYL 498
Query: 539 PPSLEGYKFLDWPKSNTTD 557
PPSL +KFL+WP+ + D
Sbjct: 499 PPSLLHHKFLEWPEGASGD 517
>gi|111038318|gb|ABH03541.1| putative Werner helicase-interacting protein [Arabidopsis thaliana]
Length = 524
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/558 (65%), Positives = 423/558 (75%), Gaps = 46/558 (8%)
Query: 4 EQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQN 63
EQL+SMGF +LAAEAL ATGG S KAT+WILSH+SS +T
Sbjct: 1 EQLVSMGFSSDLAAEALTATGGDSIQKATDWILSHRSSPQSTAT---------------- 44
Query: 64 PVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAP 123
+QPKLDRF K + A K + + + RH + S++ H H P
Sbjct: 45 -LQPKLDRFLRLHPKALAPAMGDDSSKRPNPKTQIHVAADDSNKRHKLSSSS--HRQHQP 101
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183
LSERMRP ++DVVGQDHLLSP+SLLRSAV SNRLPSI+FWGPPGTGKT++AK+++NS
Sbjct: 102 LSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSSK 161
Query: 184 --VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
Y+FV LSAVTSGVKDVRDAVE A++L ++ KRTVLF+DEVHRFNKSQQD+FLPVI
Sbjct: 162 DPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLPVI 221
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDGSI+FIGATTENPSFHLITPLLSRCRVLTLNPLKP+ VE LL+RAVDD GL SV
Sbjct: 222 EDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLPNSV- 280
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
EV+ IEFL +NCDGDARVALNALEISA A R
Sbjct: 281 ----EVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTD----------------- 319
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A+V++DDAKEA QCKHLAYD+AGE+HYNLISALHKSMRG DA+AAIYWLARMLEGGE+P
Sbjct: 320 -AVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEGGEEP 378
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+GLADP AL QAV+CYQA HFLGMPECNVILAQC AYLALAPKSI+
Sbjct: 379 LYIARRLIRFASEDIGLADPSALTQAVACYQASHFLGMPECNVILAQCTAYLALAPKSIA 438
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+YRA+GAAQKV+++SVGQNEGVPLHLRNAPTKLMKE+GYGK YIY P DPS A Q++LP
Sbjct: 439 VYRAIGAAQKVVKDSVGQNEGVPLHLRNAPTKLMKELGYGKEYIYPPSDPSSAAGQTYLP 498
Query: 540 PSLEGYKFLDWPKSNTTD 557
PSL +KFL+WP+ + D
Sbjct: 499 PSLLHHKFLEWPEGASGD 516
>gi|26451436|dbj|BAC42817.1| unknown protein [Arabidopsis thaliana]
Length = 525
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/559 (65%), Positives = 422/559 (75%), Gaps = 46/559 (8%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
MEQL+SMGF +LAAEAL A GG S KAT+WILSH+SS +T
Sbjct: 1 MEQLVSMGFSSDLAAEALTANGGDSIQKATDWILSHRSSPQSTAT--------------- 45
Query: 63 NPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHA 122
+QPKLDRF K + A K + + + RH + S++ H H
Sbjct: 46 --LQPKLDRFLRLHPKALAPAMGDDSSKRPNPKTQIHVAADDSNKRHKLSSSS--HRQHQ 101
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLSERMRP ++DV GQDHLLSP+SLLRSAV SNRLPSI+FWGPPGTGKT++AK+++NS
Sbjct: 102 PLSERMRPRTLDDVAGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 183 A--VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y+FV LSAVTSGVKDVRDAVE A++L ++ KRTVLF+DEVHRFNKSQQD+FLPV
Sbjct: 162 KDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLPV 221
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDGSI+FIGATTENPSFHLITPLLSRCRVLTLNPLKP+ VE LL+RAVDD GL SV
Sbjct: 222 IEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLPNSV 281
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
EV+ IEFL +NCDGDARVALNALEISA A R
Sbjct: 282 -----EVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTD---------------- 320
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
A+V++DDAKEA QCKHLAYD+AGE+HYNLISALHKSMRG DA+AAIYWLARMLEGGE+
Sbjct: 321 --AVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAIYWLARMLEGGEE 378
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRL+RFASED+GLADP AL QAV+CYQA HFLGMPECNVILAQC AYLALAPKSI
Sbjct: 379 PLYIARRLIRFASEDIGLADPSALTQAVACYQASHFLGMPECNVILAQCTAYLALAPKSI 438
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
++YRA+GAAQKV+++SVGQNEGVPLHLRNAPTKLMKE+GYGK YIY P DPS A Q++L
Sbjct: 439 AVYRAIGAAQKVVKDSVGQNEGVPLHLRNAPTKLMKELGYGKEYIYPPSDPSSAAGQTYL 498
Query: 539 PPSLEGYKFLDWPKSNTTD 557
PPSL +KFL+WP+ + D
Sbjct: 499 PPSLLHHKFLEWPEGASGD 517
>gi|296087560|emb|CBI34149.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/428 (74%), Positives = 357/428 (83%), Gaps = 37/428 (8%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--VS 185
MRP ++DVVGQDHLLS SLLRSA+ SNRLPSII WGPPGTGKT++AKAIVNS + S
Sbjct: 1 MRPRTVDDVVGQDHLLSHKSLLRSAIDSNRLPSIILWGPPGTGKTSIAKAIVNSSSQPSS 60
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSN---KRTVLFVDEVHRFNKSQQDSFLPVIE 242
Y+FV LSAVT+GVKDVRD VE+ARK++V N KRT+LFVDEVHRFNKSQQDSFLPVIE
Sbjct: 61 YRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQQDSFLPVIE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL+P V LL RAV D GL+ SVGG
Sbjct: 121 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLNRAVADTGRGLAWSVGG 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+EV+ DAI+FL S+CDGDARVALNALEISA+TAA
Sbjct: 181 ASIEVSDDAIDFLSSHCDGDARVALNALEISAVTAA------------------------ 216
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A+EA Q KHLAYD+AGEEHYNLISALHKSMRG+DADA+IYWLARMLEGGE+PL
Sbjct: 217 -------AREALQSKHLAYDKAGEEHYNLISALHKSMRGSDADASIYWLARMLEGGEEPL 269
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+RFASEDVGLADP+AL QAV+C QACHFLGMPECNV LAQCVAYLALAPKS+S+
Sbjct: 270 YIARRLIRFASEDVGLADPIALVQAVACCQACHFLGMPECNVNLAQCVAYLALAPKSVSV 329
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK-QSFLPPS 541
YRA+ AAQ+V+RESVGQNEGVPLHLRNAPTKLMKE+GYGKGYIY PD+PS+ Q++LPPS
Sbjct: 330 YRAILAAQEVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYPPDNPSSSTQNYLPPS 389
Query: 542 LEGYKFLD 549
L+GYKFL+
Sbjct: 390 LQGYKFLN 397
>gi|168004780|ref|XP_001755089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693682|gb|EDQ80033.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 304/551 (55%), Positives = 375/551 (68%), Gaps = 58/551 (10%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
MEQL+ MGFP +LAA+ALAATGGKSTL ATEWIL H P+ + Q
Sbjct: 1 MEQLVDMGFPQDLAAKALAATGGKSTLTATEWILVHSHPPVLE----------PSLSKRQ 50
Query: 63 NPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHA 122
P +P Q + VQ P+P+F T+ V S +L A
Sbjct: 51 KPNEP-----VEQQDDAPVSVFPRVQST-------PAPIFG---TKTSVGSRKSL----A 91
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ VVGQDHLL P +LRS + +N L SIIFWGPPGTGKT+L +AI
Sbjct: 92 PLAERMRPASVDLVVGQDHLLRPGCILRSLIDNNTLSSIIFWGPPGTGKTSLVRAIAR-- 149
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
AVSY+F+ LSAV+ G+K+VR+ +E+A+++R K +RT+LF+DE+HRFNKSQQD+FLP +E
Sbjct: 150 AVSYRFIALSAVSCGLKEVREILEEAKRVR-KFGERTLLFLDEIHRFNKSQQDAFLPYVE 208
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IVFIGATTENPSF + LLSRCRVLTLN L+P + LL RA+ D GL S+ G
Sbjct: 209 AGHIVFIGATTENPSFEINAALLSRCRVLTLNKLQPEHIRSLLDRAIYDKEKGLLLSLVG 268
Query: 303 TR----VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
V V DA++FL DGDARVALN+LEI+ + AA RV ++ +D++
Sbjct: 269 CAPEDVVRVEEDALQFLTGAADGDARVALNSLEIAGL-AAYRVWESTPRKSSADDKA--- 324
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+EA Q H+ YD+ GEEHYN+ISALHKSMRG D DAAIYWLARMLEGG
Sbjct: 325 -----------VQEALQRSHVLYDKTGEEHYNIISALHKSMRGGDPDAAIYWLARMLEGG 373
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARRL+RFASEDVGLADP AL QAV+CYQACHF GMPECNV LAQCVAYLALAPK
Sbjct: 374 EGPLYIARRLIRFASEDVGLADPQALVQAVACYQACHFTGMPECNVNLAQCVAYLALAPK 433
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFL 538
S+ +Y A+ AAQ++++ QNE VP+HLRNAPT LMKE+GYG+ P +P A FL
Sbjct: 434 SVMVYHAIEAAQRLVK-GTKQNEPVPMHLRNAPTHLMKELGYGR----QPAEPPA--DFL 486
Query: 539 PPSLEGYKFLD 549
PPSL G+KFL+
Sbjct: 487 PPSLRGHKFLN 497
>gi|302807036|ref|XP_002985249.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii]
gi|300147077|gb|EFJ13743.1| hypothetical protein SELMODRAFT_121732 [Selaginella moellendorffii]
Length = 503
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/553 (54%), Positives = 374/553 (67%), Gaps = 56/553 (10%)
Query: 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSSTTTTGAACSFELPVPNPNPNQ 62
M+ L MGF ELAA+ALAATGGKST KATEWIL+ + S
Sbjct: 1 MDYLTDMGFSRELAAQALAATGGKSTYKATEWILNQRKSDGIVQK--------------- 45
Query: 63 NPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHA 122
QP L +P + +E++ F L T+ ++ A
Sbjct: 46 ---QPAL-------VEPPAKKLKQDEEQQPSPPPPQQKSFPFLSTKVAKKNSKA----AV 91
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ND++GQDHLL P +L+S + + L S+IFWGPPGTGKTTLA+AI ++V
Sbjct: 92 PLAERMRPTSVNDILGQDHLLGPRGILKSLLEGDSLASVIFWGPPGTGKTTLARAIASTV 151
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
SY+FV LSAVTSGVK+VR+ +E+A+K + K +RT+LF+DEVHRFNK+QQD+FLP +E
Sbjct: 152 --SYRFVALSAVTSGVKEVREVLEEAKKAK-KYGQRTLLFLDEVHRFNKAQQDAFLPYVE 208
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G +VF+GATTENPSF + LLSRC+VLT+N L P +E L+KRAV D G+ S G
Sbjct: 209 AGHVVFVGATTENPSFEINAALLSRCKVLTMNKLLPEHLEKLIKRAVLDKEKGVIVSAGI 268
Query: 303 TRVE---VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ E V DA+ FL + DGDAR ALN LEI+ + A+ R +
Sbjct: 269 SSPEMLRVEDDAVVFLAAAADGDARAALNTLEIAVLAASSRFQM---------------- 312
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+VTL D K+A Q H+ YD+ GEEHYN+ISALHKSMRG DADA+IYWLARMLEGGE
Sbjct: 313 ---MVVTLADVKDALQRSHVFYDKTGEEHYNIISALHKSMRGGDADASIYWLARMLEGGE 369
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRLVRFASEDVGLADP AL QA++CYQACHFLGMPECNV LAQCV YLALAPKS
Sbjct: 370 GPLYVARRLVRFASEDVGLADPQALPQAIACYQACHFLGMPECNVHLAQCVVYLALAPKS 429
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS-AKQSFL 538
+++Y+A+ AAQ+ +RE GQNE VPLHLRNAPTKLMK++GY KGYIY P +Q ++
Sbjct: 430 VAVYQAIQAAQQYVREK-GQNEPVPLHLRNAPTKLMKDLGYAKGYIYPPSHSGPVEQDYM 488
Query: 539 PPSLEGYKFLDWP 551
P SL G KFL WP
Sbjct: 489 PSSLRGLKFLRWP 501
>gi|302773279|ref|XP_002970057.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii]
gi|300162568|gb|EFJ29181.1| hypothetical protein SELMODRAFT_231444 [Selaginella moellendorffii]
Length = 411
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/428 (60%), Positives = 324/428 (75%), Gaps = 23/428 (5%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP ++N ++GQDHLL P +L+S + + L S+IFWGPPGTGKTTLA+AI ++V SY+
Sbjct: 1 MRPTSVNAILGQDHLLGPRGILKSLLEGDSLASVIFWGPPGTGKTTLARAIASTV--SYR 58
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
FV LSAVTSGVK+VR+ +E+A+K + K +RT+LF+DEVHRFNK+QQD+FLP +E G +V
Sbjct: 59 FVALSAVTSGVKEVREVLEEAKKAK-KYGQRTLLFLDEVHRFNKAQQDAFLPYVEAGHVV 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVE- 306
F+GATTENPSF + LLSRC+VLT+N L P +E L+KRAV D G+ S G + E
Sbjct: 118 FVGATTENPSFEINAALLSRCKVLTMNKLLPEHLEKLIKRAVLDKEKGVIVSAGISSPEM 177
Query: 307 --VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364
V DA+ FL + DGDAR ALN LEI+ + A+ K++++ V +
Sbjct: 178 LRVEDDAVVFLAAAADGDARAALNTLEIAVLAAS------SSKKIDKS---------VMV 222
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
VTL D K+A Q H+ YD+ GEEHYN+ISALHKSMRG DADA+IYWLARMLEGGE PLY+
Sbjct: 223 VTLADVKDALQRSHVFYDKTGEEHYNIISALHKSMRGGDADASIYWLARMLEGGEGPLYV 282
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
ARRLVRFASEDVGLADP AL QA++CYQACHFLGMPECNV LAQCV YLALAPKS+++Y+
Sbjct: 283 ARRLVRFASEDVGLADPQALPQAIACYQACHFLGMPECNVHLAQCVVYLALAPKSVAVYQ 342
Query: 485 ALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS-AKQSFLPPSLE 543
A+ AAQ+ +RE GQNE VPLHLRNAPTKLMK++GY KGYIY P +Q ++P SL
Sbjct: 343 AIQAAQQYVREK-GQNEPVPLHLRNAPTKLMKDLGYAKGYIYPPSHSGPVEQDYMPSSLR 401
Query: 544 GYKFLDWP 551
G KFL WP
Sbjct: 402 GLKFLRWP 409
>gi|168066656|ref|XP_001785250.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663155|gb|EDQ49936.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 498
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/431 (56%), Positives = 303/431 (70%), Gaps = 26/431 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ VVGQDHLL P +LR+ + +N L SIIFWGPPGTGKT+L + I
Sbjct: 79 PLAERMRPASVDLVVGQDHLLGPRCMLRNLIDANSLSSIIFWGPPGTGKTSLVQTIAR-- 136
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
AVSY+FV LSAV+SG+K+VR+ +E+A++L+ K +RT+L +DE+HRFNK+Q D FLP +E
Sbjct: 137 AVSYRFVALSAVSSGLKEVRETLEEAKRLQ-KFGERTLLLLDEIHRFNKAQLDVFLPCVE 195
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF + LLSRC+VLTLN L+P + LL RA+ D GL S+ G
Sbjct: 196 AGHIVLIGATTENPSFEINAALLSRCKVLTLNKLQPDHIRSLLDRAISDKEKGLMVSLAG 255
Query: 303 TRVE----VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+ E V DA+EFL DGDARVALN LE++ + A + C
Sbjct: 256 SAAEDVIKVEQDALEFLADAADGDARVALNTLELAGLAAFASW---------ESTPRRPC 306
Query: 359 SPYVALVTLDDAK-EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
S A L DA +A Q + +D++GEEHYN++SAL KSMRG D DAAIYWLARMLEG
Sbjct: 307 SADKASTILADANAKAIQRSYFLFDKSGEEHYNIVSALIKSMRGGDPDAAIYWLARMLEG 366
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLYIARRL+RFASEDVGL+DP AL AV+CYQACHF+GMPECNV LAQCV YL LAP
Sbjct: 367 GEGPLYIARRLIRFASEDVGLSDPQALVLAVACYQACHFIGMPECNVNLAQCVTYLTLAP 426
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF 537
KS+ +Y A+ AAQ++++ +NE VP+HLRNAPT+LMK+ Y D + F
Sbjct: 427 KSVVVYHAVEAAQRLVK-GAKKNEPVPMHLRNAPTQLMKDHSY--------DRQAEPADF 477
Query: 538 LPPSLEGYKFL 548
LPPSL G KFL
Sbjct: 478 LPPSLRGQKFL 488
>gi|118086469|ref|XP_418979.2| PREDICTED: ATPase WRNIP1 isoform 2 [Gallus gallus]
Length = 562
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/455 (50%), Positives = 297/455 (65%), Gaps = 28/455 (6%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
++ A + PL++R+RP + D VGQ+ +L ++LLRS + S+ +PS+I WGPPG GKT
Sbjct: 112 ASVAQRLEGQPLADRLRPDTLRDYVGQERVLGAHTLLRSLLESHEIPSLILWGPPGCGKT 171
Query: 173 TLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TLA I NS +FV LSA ++ DVRD + A+ + ++T+LF+DE+HRFNK
Sbjct: 172 TLAHIIANSSKKKGMRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNK 231
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L L +E +L RAV
Sbjct: 232 SQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSVEAMEAILLRAVKS 291
Query: 292 V--------NNGLSKSVGGTR------VEVNHDAIEFLCSNCDGDARVALNALEIS--AI 335
+ N S + G ++ V + A+ L CDGDAR LN L+++ A
Sbjct: 292 LGVQVLGQGNQHSSSATGSSKESSELPVYIEEKALSTLAYLCDGDARTGLNGLQLAVQAR 351
Query: 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISAL 395
AA + + E GCS L+T + KE Q H+ YDRAGEEHYN ISAL
Sbjct: 352 LAAGKTTLLSFTE--------GCSVNGVLITEEHVKEGLQRSHILYDRAGEEHYNCISAL 403
Query: 396 HKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACH 455
HKSMRG+D +A++YWLARMLEGGE PLY+ARRLVRFASED+GLADPLAL QAV+ YQ CH
Sbjct: 404 HKSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPLALTQAVAAYQGCH 463
Query: 456 FLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLM 515
F+GMPEC VILAQCV Y A APKSI +YRA G ++ +R G VPLHLRNAPT+LM
Sbjct: 464 FIGMPECEVILAQCVVYFARAPKSIEVYRAYGNVKECLRMHTGPLPPVPLHLRNAPTRLM 523
Query: 516 KEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFL 548
K++GYGKGY Y P +P +Q +LP L+G F
Sbjct: 524 KDLGYGKGYKYNPMYKEP-VEQDYLPEELKGTDFF 557
>gi|147902451|ref|NP_001089187.1| Werner helicase interacting protein 1 [Xenopus laevis]
gi|63147358|dbj|BAD98297.1| Werner helicase interacting protein 1 [Xenopus laevis]
Length = 572
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/440 (50%), Positives = 292/440 (66%), Gaps = 30/440 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL+++MRP +N+ +GQ+ +L N++LR+ + +N +PSII WGPPG GKTTLA I N+
Sbjct: 149 PLADKMRPTTLNNYMGQNKVLGENTMLRNLLQANDIPSIILWGPPGCGKTTLAHIIAKNA 208
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVR+ ++ A+ + ++T+LFVDE+HRFNK QQD+FLP +
Sbjct: 209 QKSSSRFVTLSATSASTSDVREFIKQAQNEQRLFKRKTILFVDEIHRFNKMQQDTFLPHV 268
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + T LLSRCRV+ L L +E +L RAVD +
Sbjct: 269 ECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLSVEAMETILMRAVDSLGLKVLKDGE 328
Query: 294 --NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS--AITAAVRVPVKEVKEV 349
G S V T V V A+ L CDGDAR LN L++S A AA + P+K+ +
Sbjct: 329 QLVGSSSDVSETSVYVEEKALTTLAHLCDGDARTGLNGLQLSVQASLAAEKDPIKQGIVI 388
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
++E KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++Y
Sbjct: 389 KEEH----------------IKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDKNASLY 432
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WL RMLEGGE PLY+ARRLVRFASED+GLADP AL QAVS YQACHF+GMPEC+VILAQC
Sbjct: 433 WLGRMLEGGEDPLYVARRLVRFASEDIGLADPQALTQAVSTYQACHFIGMPECDVILAQC 492
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
V Y+A APKS+++Y A + ++ G VPLHLRNAPTKLMK +GYGKGY Y P+
Sbjct: 493 VMYMACAPKSVTVYSAYNKVKNCLKNHKGPLPPVPLHLRNAPTKLMKGLGYGKGYKYNPN 552
Query: 530 -DPSAKQSFLPPSLEGYKFL 548
+Q ++P ++G F+
Sbjct: 553 FSEPVEQDYMPEEMKGVTFV 572
>gi|189230336|ref|NP_001121492.1| Werner helicase interacting protein 1 [Xenopus (Silurana)
tropicalis]
gi|183985959|gb|AAI66299.1| LOC100158593 protein [Xenopus (Silurana) tropicalis]
Length = 577
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/441 (51%), Positives = 292/441 (66%), Gaps = 32/441 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL+++MRP ++ND +GQ +L N+LLR+ + SN +PSII WGPPG GKTTLA I N+
Sbjct: 154 PLADKMRPTDLNDYMGQKKVLGENTLLRNLLQSNDIPSIILWGPPGCGKTTLAHIIAKNT 213
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVR+ ++ A+ + ++T+LFVDE+HRFNK+QQD+FLP +
Sbjct: 214 HKNSCRFVTLSATSASTSDVREVIKQAQNEQRLFKRKTILFVDEIHRFNKTQQDTFLPHV 273
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL----- 296
E G+I IGATTENPSF + T LLSRCRV+ L L +E +L RAV + +
Sbjct: 274 ECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLSVEAMEAILMRAVGSLGIKVLKVGE 333
Query: 297 -----SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS--AITAAVRVPVKEVKEV 349
S V T + V A+ L CDGDAR LN L++S A AA + P++
Sbjct: 334 QPVHSSSDVSETPIYVEEKALTTLAHLCDGDARTGLNGLQLSVQASLAAEKDPIE----- 388
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
+ ++ + KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++Y
Sbjct: 389 -----------HGIIIKEEHIKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLY 437
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WL RMLEGGE PLY+ARRLVRFASEDVGLADP AL QAVS YQACHF+GMPEC VILAQC
Sbjct: 438 WLGRMLEGGENPLYVARRLVRFASEDVGLADPQALTQAVSTYQACHFIGMPECEVILAQC 497
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP- 528
V YLA APKSIS+Y A ++ ++ G VPLHLRNAPTKLMK +GYGKGY Y P
Sbjct: 498 VMYLACAPKSISVYSAYNKVKECLKNHKGPLPSVPLHLRNAPTKLMKGLGYGKGYKYNPL 557
Query: 529 -DDPSAKQSFLPPSLEGYKFL 548
+P +Q ++P ++G F+
Sbjct: 558 FSEP-VEQDYMPEEMKGVTFV 577
>gi|406998233|gb|EKE16175.1| hypothetical protein ACD_11C00028G0002 [uncultured bacterium]
Length = 412
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/433 (50%), Positives = 296/433 (68%), Gaps = 29/433 (6%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ PL++RMRP N+++ VGQ++++ +LR + S+++PS+IFWGPPG+GKTTLA+ I
Sbjct: 5 IIQKPLADRMRPENLDEFVGQENIVGEGKMLRKIIESDQIPSMIFWGPPGSGKTTLAQII 64
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
N A +FV LSAV+SGVK+++ ++ A+ NK+T+ F+DE+HRFNK+QQD L
Sbjct: 65 AN--ATDAEFVQLSAVSSGVKEIKKIIDKAKFEAEFKNKKTIFFLDEIHRFNKAQQDRLL 122
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +EDG+++ IGATTENPSF + LLSR RV L LK +V L++RA+ D GL
Sbjct: 123 PYVEDGTLILIGATTENPSFEVNYALLSRTRVFVLEQLKQENVRKLIERALSDKKKGL-- 180
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G +VE++ + ++FL +GDAR ALN LE++ T + +DE
Sbjct: 181 --GKIKVEISDEDLDFLAGLSNGDARAALNVLELAVTTGK-----------KDDDEK--- 224
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+ ++ KEAFQ L YDRAGE+HYN+ISALHKSMRG DADAA+YWLARMLEGG
Sbjct: 225 ----IFIEKENIKEAFQKTSLLYDRAGEQHYNIISALHKSMRGGDADAALYWLARMLEGG 280
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLY+ARR++RFASED+G A+ AL+QA+S Y ACH++GMPEC V LAQ VAY+A + K
Sbjct: 281 EDPLYVARRIIRFASEDIGTANSFALDQAISAYHACHYIGMPECAVNLAQAVAYMAKSKK 340
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPS-AKQ 535
S ++Y A G A++ NE VP+HLRNAPTK MK++GYGK Y YTPD +P A+Q
Sbjct: 341 SNALYVAYGKAKQDAENF--PNEPVPIHLRNAPTKFMKDLGYGKEYKYTPDFENPEDAQQ 398
Query: 536 SFLPPSLEGYKFL 548
F P L K+L
Sbjct: 399 QFFPDKLRKRKYL 411
>gi|449492498|ref|XP_002197546.2| PREDICTED: ATPase WRNIP1-like [Taeniopygia guttata]
Length = 658
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/443 (50%), Positives = 289/443 (65%), Gaps = 23/443 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP + VGQ+ +L +LLRS + S+ +PS+I WGPPG GKTTLA I NS
Sbjct: 217 PLAERLRPDTLGSYVGQERVLGAQTLLRSLLESHEIPSLILWGPPGCGKTTLAHIIANSS 276
Query: 183 AVS-YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +FV LSA ++ DVRD + A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 277 KKNGMRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRFNKSQQDTFLPHV 336
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G++ IGATTENPSF + LLSRCRV+ L L +E +L RAV +
Sbjct: 337 ECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSAEAMEAILMRAVRFLGLQVLGQGD 396
Query: 294 -NGLSKSVGGTR-----VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347
+G + G++ V + A+ L CDGDAR LN L++ AV+ + +
Sbjct: 397 QHGTPATGSGSKSSELPVYIEEKALNTLAYLCDGDARTGLNGLQL-----AVQARIAVGR 451
Query: 348 EVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAA 407
+ G + LVT + KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A+
Sbjct: 452 TTPLNTTAKGGAADGILVTEEHVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDENAS 511
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YWLARMLEGGE PLY+ARRLVRFASED+GLADPLAL QAV+ YQ CHF+GMPEC VILA
Sbjct: 512 LYWLARMLEGGEDPLYVARRLVRFASEDIGLADPLALTQAVAAYQGCHFIGMPECEVILA 571
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
QCV Y A APKSI +YRA G ++ +R G VPLHLRNAPT+LMK +GYGKGY Y
Sbjct: 572 QCVVYFARAPKSIEVYRAYGNVKECLRMHTGPLPPVPLHLRNAPTRLMKNLGYGKGYKYN 631
Query: 528 P--DDPSAKQSFLPPSLEGYKFL 548
P +P +Q +LP L+G F
Sbjct: 632 PMYKEP-VEQDYLPEELKGTDFF 653
>gi|302389240|ref|YP_003825061.1| recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
gi|302199868|gb|ADL07438.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
Length = 446
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/428 (52%), Positives = 294/428 (68%), Gaps = 29/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP N+++ VGQDHLL +LR + ++ + S+I WGPPG GKTTLA I
Sbjct: 17 APLADRMRPRNLDEFVGQDHLLGRGKILRKLIENDLITSMILWGPPGVGKTTLAMIIAEM 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+FV SAV SG+K+V++ +++A++ R + +RT++F+DE+HRFNKSQQD+FLP +
Sbjct: 77 TRA--RFVTFSAVLSGIKEVKEVMKEAQERR-RYGQRTLVFIDEIHRFNKSQQDAFLPYV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L + LLSR +V +NPL P D+ +LLKRA+ D GL G
Sbjct: 134 EKGDIILIGATTENPSFELNSALLSRSKVFVMNPLSPDDLMVLLKRALRDEERGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+V V + + + +GDARVALN LEI+ +++ VP D+S
Sbjct: 190 RFKVRVEDEQLYKIAVFANGDARVALNTLEIAVLSS---VP----------DDSGQIR-- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + KEAFQ K L YD+ GEEHYNLISA HKS+R +D+DAA+YWLARMLE GE P
Sbjct: 235 ---ITDEVLKEAFQRKTLLYDKGGEEHYNLISAFHKSLRNSDSDAALYWLARMLEAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR++RFASEDVGLADP AL QAV+ Y A HF+GMPEC+V LAQ YLALAPKS S
Sbjct: 292 LYVARRMIRFASEDVGLADPRALEQAVAAYHAAHFIGMPECSVNLAQAAVYLALAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A+K E++ Q GVPLHLRNAPT+LM+E+GYG+GY Y D D A LP
Sbjct: 352 LYTGYARAKKDALETLAQ--GVPLHLRNAPTRLMEELGYGRGYKYAHDFEDKIADMECLP 409
Query: 540 PSLEGYKF 547
+L G ++
Sbjct: 410 DNLRGRQY 417
>gi|47086195|ref|NP_998085.1| ATPase WRNIP1 [Danio rerio]
gi|45709587|gb|AAH67729.1| Zgc:85976 [Danio rerio]
Length = 546
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/444 (50%), Positives = 292/444 (65%), Gaps = 24/444 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E +RP + + GQ+ L+ +LLRS + S +PS+I WGPPG GKTTLA I +S+
Sbjct: 116 PLAELLRPSTLEEYFGQNKLIGEQTLLRSLLKSQEIPSLILWGPPGCGKTTLAHIIASSI 175
Query: 183 AV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +FV LSA ++ V DVR+ ++ A+ ++TVLF+DE+HRFNKSQQD+FLP
Sbjct: 176 KQKGTGRFVTLSATSASVSDVREVIKQAQNELRLCKRKTVLFIDEIHRFNKSQQDTFLPH 235
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL---- 296
+E G+I IGATTENPSF + + LLSRCRVL L L V +L+RAVD ++ +
Sbjct: 236 VECGTITLIGATTENPSFQVNSALLSRCRVLVLERLSVEAVGSILRRAVDFLDLRILDSE 295
Query: 297 ----SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
S+ +V V A++ L CDGDAR ALN L++ A+ A V ++
Sbjct: 296 ERHSSEICSEAQVCVEQKALDTLAHLCDGDARAALNGLQL-AVQACV------LQSSSNH 348
Query: 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
+ S +V KEA Q H+ YD+AGEEHYN ISALHKSMRG+DA+AA+YWLA
Sbjct: 349 NRSS------TVVREQHIKEALQRSHILYDKAGEEHYNCISALHKSMRGSDANAALYWLA 402
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RMLEGGE PLY+ARRLVRFASED+GLADP+AL+QAV+ +QACH +GMPEC VILAQC Y
Sbjct: 403 RMLEGGEDPLYVARRLVRFASEDIGLADPVALSQAVAAFQACHLIGMPECEVILAQCAVY 462
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DP 531
LA APKS+ +Y+A + +R G VPLHLRNAPTKLMK +GY KGY Y P+
Sbjct: 463 LARAPKSVEVYKAYNNVKMCLRNHKGPLPSVPLHLRNAPTKLMKNLGYAKGYKYNPNYSG 522
Query: 532 SAKQSFLPPSLEGYKFLDWPKSNT 555
KQ +LP L G F W S++
Sbjct: 523 PVKQEYLPEELRGVDFFTWTPSDS 546
>gi|348500735|ref|XP_003437928.1| PREDICTED: ATPase WRNIP1-like [Oreochromis niloticus]
Length = 604
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/527 (44%), Positives = 316/527 (59%), Gaps = 41/527 (7%)
Query: 59 NPNQNPVQPKLDRFFHFQTKPSSAAANAVQE------------KEKDREIEPSPLF--KR 104
N + PVQ + + F + P SAA+ V+ E R +P+P +
Sbjct: 89 NRGKPPVQTERNGLFAGKQSPGSAASKGVKRLLNEEAELGAAGTETLRSQQPAPASSGQG 148
Query: 105 LKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFW 164
LKT + T V PL+E +RP + + GQ+ ++ SL R + S +PS+I W
Sbjct: 149 LKTAKRLSPRTLFAV-DKPLAEVLRPETLEEYFGQNKVVGEQSLFRPLLDSQEIPSLILW 207
Query: 165 GPPGTGKTTLAKAIVNSVAV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222
GPPG GKTTLA I ++ + +FV LSA ++ +VR+ ++ A+ ++T+LF
Sbjct: 208 GPPGCGKTTLAHIIASTSKKKGTARFVTLSATSTSTNEVREVIKQAQNELRLCKRKTILF 267
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
+DE+HRFNKSQQD+FLP +E G++ IGATTENPSF + LLSRC+VL L L +
Sbjct: 268 IDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCKVLVLEKLSVEAMG 327
Query: 283 ILLKRAV----------DDVNNGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNA 329
+L RAV D N G R + + A++ + CDGDARV LN+
Sbjct: 328 SILNRAVATLGIRIQGHDSTNPKDEDQTDGHRQKKIYIQQKALDTMAYLCDGDARVGLNS 387
Query: 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHY 389
L++ AV+ + + + +D SP LVT + KE Q H+ YD+AGEEHY
Sbjct: 388 LQL-----AVQAQMSKTNLLAPDD-----SPQEILVTEEHIKEGLQRSHILYDKAGEEHY 437
Query: 390 NLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVS 449
N ISALHKSMRG+ +A++YWL RMLEGGE PLY+ARRLVRFASEDVG+ADP AL QAVS
Sbjct: 438 NCISALHKSMRGSHENASLYWLGRMLEGGEDPLYVARRLVRFASEDVGMADPTALTQAVS 497
Query: 450 CYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRN 509
+QACHF+GMPEC VILAQCV YLA APKS+SIY+A + +R G VPLHLRN
Sbjct: 498 AFQACHFIGMPECEVILAQCVVYLARAPKSVSIYKAYNNVKTCLRSHKGPLPPVPLHLRN 557
Query: 510 APTKLMKEIGYGKGYIYTPD-DPSAKQSFLPPSLEGYKFLDWPKSNT 555
APT+LMK++GY KGY Y PD +Q +LP L+G F W S++
Sbjct: 558 APTRLMKQLGYSKGYKYNPDFSGPVEQEYLPEELQGINFFTWKPSDS 604
>gi|300087469|ref|YP_003757991.1| ATPase central domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527202|gb|ADJ25670.1| AAA ATPase central domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 442
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/430 (51%), Positives = 297/430 (69%), Gaps = 32/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++ VGQ+HL+ + LR A+ S +LPS+I WGPPG+GKTTLA +
Sbjct: 18 APLAARMRPRTLDEYVGQEHLVGQGTALRRALESGKLPSLILWGPPGSGKTTLANLLAR- 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A S F +SAV++GV D+R +E+AR+ R+ + T+LF+DE+HRFNKSQQD+ LP +
Sbjct: 77 -ATSAHFSPVSAVSAGVADLRKVIEEARQRRLGEGRGTILFIDEIHRFNKSQQDTILPFV 135
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG++V IGATTENPSF +I+PLLSR R L L D++ +++RAV D + G +G
Sbjct: 136 EDGTVVLIGATTENPSFEVISPLLSRARTFVLKGLSETDMKSIIERAVSDRDRG----IG 191
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+RV+++ +A++ + S GDAR+ALN LE++A V DES
Sbjct: 192 ESRVDLSPEAMDRIISLASGDARIALNILELAAGVTPV-------------DES--GRRK 236
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V+ T+D EA Q K L YDRAGE+H+++ISALHKSMRG+D DA++YWL RMLE GE P
Sbjct: 237 VSRQTVD---EAAQSKTLLYDRAGEQHFDIISALHKSMRGSDPDASLYWLGRMLEAGEDP 293
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+Y+ARRLVRFA+EDVGLADP AL AV+ QA H++GMPE NVIL Q V YLA APKS S
Sbjct: 294 MYVARRLVRFAAEDVGLADPQALVIAVAAQQATHYIGMPEANVILGQAVVYLATAPKSNS 353
Query: 482 IYRALGAAQKVIRESVGQN--EGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+Y AA K ++ ++ +N E VPLHLRNAPT LMKE+GYGKGY Y D P +Q
Sbjct: 354 VY----AAYKRVQRTIAENPLEPVPLHLRNAPTGLMKELGYGKGYKYAHDYPEHFVRQQN 409
Query: 538 LPPSLEGYKF 547
LP +L+ +F
Sbjct: 410 LPEALKDSRF 419
>gi|156382458|ref|XP_001632570.1| predicted protein [Nematostella vectensis]
gi|156219628|gb|EDO40507.1| predicted protein [Nematostella vectensis]
Length = 432
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/437 (50%), Positives = 290/437 (66%), Gaps = 24/437 (5%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV--AVS 185
MRP ++ D VGQ+ +L + LLR+ + +N +PS++ WGPPG GKTTLA + N+ +
Sbjct: 1 MRPTSLEDYVGQEQVLGNSCLLRTLLEANEVPSMVLWGPPGCGKTTLAHIVANNARKTTT 60
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
+FV LSA TSG+ D+++ V+ A+ + ++T+LFVDE+HRFNK+QQD+FLP +E+G+
Sbjct: 61 TRFVTLSATTSGINDIKEVVKVAKNEQQMFRRKTILFVDEIHRFNKTQQDTFLPHVENGT 120
Query: 246 IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK--SVGGT 303
I IGATTENPSF L T LLSRCRV+ L+ L ++ +L RAV+++ + S G
Sbjct: 121 ITLIGATTENPSFQLNTALLSRCRVIVLDKLSSEHLQRILCRAVENMGCVIENKSSTGKD 180
Query: 304 RVE----------VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
+E + DAI L + CDGDARVALN L+++ + ++ K+
Sbjct: 181 SMEMDSDSPTVAIIERDAITALANLCDGDARVALNGLQLAVQSQTSGSSLRRQKQ----- 235
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
+ P V + KE Q HL YDRAGEEH+N+ISALHKS+RG+D +AA+YWLAR
Sbjct: 236 --NAPDPSRVRVNVAHVKEGLQRTHLLYDRAGEEHFNIISALHKSLRGSDGNAALYWLAR 293
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML GE PLYIARRLVRFASEDVGLADP ALNQ V+ YQACHF+G+PEC VILAQ YL
Sbjct: 294 MLTAGEDPLYIARRLVRFASEDVGLADPNALNQTVAAYQACHFIGLPECEVILAQATIYL 353
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDP 531
A APKSI +Y A A+ ++ G + VPLH+RNAPTKLMK +GYG GY Y P D+P
Sbjct: 354 ARAPKSIEVYSAYNNAKACVKNWDGPHPPVPLHIRNAPTKLMKTLGYGDGYKYNPAYDEP 413
Query: 532 SAKQSFLPPSLEGYKFL 548
Q++LPP L F
Sbjct: 414 -VDQTYLPPELHNVDFF 429
>gi|395512095|ref|XP_003760280.1| PREDICTED: ATPase WRNIP1-like [Sarcophilus harrisii]
Length = 498
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/447 (50%), Positives = 290/447 (64%), Gaps = 28/447 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + + +GQ+ ++ +LLRS + SN +PS+I WGPPG GKTTLA I N S
Sbjct: 54 PLADKMRPATLQEYIGQNKVVGQETLLRSLLESNEIPSLILWGPPGCGKTTLAYIIANNS 113
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 114 KKNSMRFVTLSATSAKTSDVRDVIKQAQNEKNFFKRKTILFIDEIHRFNKSQQDTFLPHV 173
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV------------ 289
E G++ IGATTENPSF + LLSRCRV+ L L ++ +L RAV
Sbjct: 174 ECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSAEAMKTILMRAVSSLGLRVLDQGR 233
Query: 290 --DDVNNGLSKSVGGTRVE----VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV 343
D V++G S S + E + A+ L CDGDAR LN L++ A+ A +
Sbjct: 234 PTDSVSHGNSSSCSSSSSEPPVYIEDKAVNTLAYLCDGDARTGLNGLQL-AVQAKLGSRK 292
Query: 344 KEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND 403
K+ Q +G L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D
Sbjct: 293 PFCKKSVQNYSGEG-----VLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSD 347
Query: 404 ADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECN 463
+A++YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC
Sbjct: 348 QNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECE 407
Query: 464 VILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKG 523
V+LAQCV Y A APKSI +Y A + +R G VP+HLRNAPT+LMK++GYGKG
Sbjct: 408 VLLAQCVVYFARAPKSIEVYNAYNNVKACLRNHQGPLPPVPMHLRNAPTRLMKDLGYGKG 467
Query: 524 YIYTPD--DPSAKQSFLPPSLEGYKFL 548
Y Y P DP +Q +LP L G F
Sbjct: 468 YKYNPSYKDP-VEQEYLPEELRGIDFF 493
>gi|260819040|ref|XP_002604690.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
gi|229290018|gb|EEN60701.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
Length = 449
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/443 (50%), Positives = 295/443 (66%), Gaps = 20/443 (4%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++ VGQ L S+LR V ++ +PS++ WGPPG GKTT+A+ I +
Sbjct: 16 PLAERVRPTCLDLYVGQTKALGAGSMLRLLVEAHDIPSMVLWGPPGCGKTTMAQIIAKNA 75
Query: 183 AV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +FV LSA SGV +VRD ++ A+ + ++T+LF+DE+HRFNK QQD+FLP
Sbjct: 76 KQHQNSRFVALSATMSGVDEVRDVIKVAKNEQTMFRRKTILFIDEIHRFNKKQQDTFLPH 135
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG----L 296
+E G+IV IGATTENPSF L + LLSRCRV+ L L DVE++L+RA + + L
Sbjct: 136 VESGTIVLIGATTENPSFSLNSALLSRCRVIVLEKLGVEDVELILRRAAHAIGDMTLLFL 195
Query: 297 SKSVGGTR-VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
++ V + +AI L CDGDAR ALN L+ +A+ + + + +
Sbjct: 196 CNVFTASKPVTIQKEAITTLAHLCDGDARTALNGLQ-TAVRSQMAI---------HSNHG 245
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
D +VT++ KE Q H+ YDRAGEEHYN+ISA+HKS+RG+DA+AA+YWLARML
Sbjct: 246 DKQDTQPVVVTVEHVKEGLQRSHVLYDRAGEEHYNIISAMHKSIRGSDANAALYWLARML 305
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
GGE PLY+ARRL+R ASEDVGLADP AL QAV+ YQACH +GMPEC VILAQCV YLA
Sbjct: 306 AGGEDPLYVARRLIRCASEDVGLADPSALVQAVATYQACHSIGMPECEVILAQCVVYLAR 365
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSA 533
APKS+ +Y A A++ + G GVPLHLRNAPT LMK++GYGKGY Y P +P
Sbjct: 366 APKSVEVYTAYTNAKQHVERHQGPLPGVPLHLRNAPTCLMKDLGYGKGYKYNPAYSEP-V 424
Query: 534 KQSFLPPSLEGYKFLDWPKSNTT 556
+Q +LP L G F K++T+
Sbjct: 425 EQDYLPRELLGTDFFTHQKTDTS 447
>gi|432119585|gb|ELK38541.1| ATPase WRNIP1 [Myotis davidii]
Length = 445
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/442 (50%), Positives = 284/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 6 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 65
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 66 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 125
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN---NGLSK 298
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + G S+
Sbjct: 126 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVAGASR 185
Query: 299 SVG----------GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
S V + A++ L DGDAR+ LN L+++ + K+
Sbjct: 186 STDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARIGLNGLQLAVLARL------SSKK 239
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP AL+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+DA A++
Sbjct: 240 MFCKKSGQAYSPSRALITENDVKEGLQKSHILYDRAGEEHYNCISALHKSMRGSDASASL 299
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 300 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALPQAVAAYQGCHFIGMPECEVLLAQ 359
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 360 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 419
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 420 MYSEP-VDQEYLPEELRGVDFF 440
>gi|344292328|ref|XP_003417880.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Loxodonta africana]
Length = 660
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 283/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDALQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSQ 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S T V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PADPLSHSSNSTSEPSVLIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 455 MFCKKSGQTYSPARVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPAALTQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKS+ +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSVEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQEYLPEELRGVDFF 655
>gi|354468791|ref|XP_003496834.1| PREDICTED: ATPase WRNIP1 [Cricetulus griseus]
gi|344243135|gb|EGV99238.1| ATPase WRNIP1 [Cricetulus griseus]
Length = 660
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 284/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSVILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + S SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 MFCKKSSQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>gi|297544999|ref|YP_003677301.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842774|gb|ADH61290.1| AAA ATPase central domain protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 443
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 284/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPRTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KFV SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFVTFSAVLSGIKEIKEIMAKA-ELDAMHGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ ILLKRA+ D NGL G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLILLKRALKDEQNGL----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + ++ + +GDARVALN LEI+ + A V ++G
Sbjct: 191 YKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKV---------------TEGRR--- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 233 -IVTDDILADAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++RFASED+GLADP AL AV+ Y ACH++GMPEC+V LAQ YLALAPKS ++
Sbjct: 292 YIARRMIRFASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A++ E++ E VP+HLRNAPTKLMKE+GYGKGY Y D D LP
Sbjct: 352 YMAYNKAKEDAEETIA--ESVPMHLRNAPTKLMKELGYGKGYKYAHDFEDKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|350586354|ref|XP_001924550.3| PREDICTED: ATPase WRNIP1 [Sus scrofa]
Length = 503
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/442 (49%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++R+RP + D VGQ + P +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 64 PLADRLRPDALQDFVGQGRAVGPETLLRSLLEANEVPSLILWGPPGCGKTTLAHIIANNS 123
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 124 KKHSIRFVTLSATSAKTTDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 183
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS-- 299
E G+I IGATTENPSF + LLSRCRV+ L L V +L RA++ + + S
Sbjct: 184 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAINSLGIHVLDSSR 243
Query: 300 -----------VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V + A++ L DGDAR LN L+++ + ++
Sbjct: 244 PADPLSHSSNSSSEPSVFIEDKAVDTLAHLSDGDARAGLNGLQLAVLARL------SARK 297
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + P LVT D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +AA+
Sbjct: 298 VFGKKTGQTYPPGRVLVTEGDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNAAL 357
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWL RMLEGGE PLY+ARRLVRFASEDVGLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 358 YWLGRMLEGGEDPLYVARRLVRFASEDVGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 417
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV YLA APKSI +Y A + +R G VPLHLRNAPT+LMK++GYG+GY Y P
Sbjct: 418 CVVYLARAPKSIEVYSAYSNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGQGYKYNP 477
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 478 AYSEP-VDQEYLPEELRGVDFF 498
>gi|156718142|ref|NP_001096576.1| ATPase WRNIP1 [Bos taurus]
gi|151553722|gb|AAI50137.1| Werner helicase interacting protein 1 [Bos taurus]
Length = 638
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/443 (49%), Positives = 282/443 (63%), Gaps = 25/443 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D VGQ + P +LLRS + ++ +PS+I WGPPG GKTTLA I N S
Sbjct: 199 PLADTMRPDALQDFVGQGRAVGPETLLRSLLEASEVPSLILWGPPGCGKTTLAHIIANNS 258
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 259 KKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPHV 318
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV------------ 289
E G+I IGATTENPSF + LLSRCRV+ L L V +L RAV
Sbjct: 319 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAVNSLGIQVLDSSR 378
Query: 290 --DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347
D +++G S + V + A++ L DGDAR LN L+++ + +
Sbjct: 379 PADPLSHG-GNSSSESSVLIEDKAVDTLAHLSDGDARAGLNGLQLAVLARL------SAR 431
Query: 348 EVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAA 407
+ + P LVT D KE Q H+ YDRAGEEHYN ISALHKSMRG+D+ AA
Sbjct: 432 KTFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDSSAA 491
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YWL RMLEGGE PLY+ARRLVRFASEDVGLADP AL QAV+ YQ CHF+GMPEC V+LA
Sbjct: 492 LYWLGRMLEGGEDPLYVARRLVRFASEDVGLADPSALTQAVATYQGCHFIGMPECEVLLA 551
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
QCV YLA APKS+ +Y A + +R G VPLHLRNAPT+LMK++GYG+GY Y
Sbjct: 552 QCVVYLARAPKSVEVYSAYNNVKACLRGHQGPLPPVPLHLRNAPTRLMKDLGYGQGYKYN 611
Query: 528 P--DDPSAKQSFLPPSLEGYKFL 548
P +P +Q +LP L G F
Sbjct: 612 PAYSEP-VEQEYLPQELRGVDFF 633
>gi|27229310|ref|NP_758835.1| ATPase WRNIP1 [Rattus norvegicus]
gi|73920471|sp|Q8CG07.1|WRIP1_RAT RecName: Full=ATPase WRNIP1; AltName: Full=Werner
helicase-interacting protein 1
gi|25989624|gb|AAN15750.1| Werner syndrome-interacting protein-like protein [Rattus
norvegicus]
gi|68534260|gb|AAH98652.1| Werner helicase interacting protein 1 [Rattus norvegicus]
gi|149045258|gb|EDL98344.1| Werner helicase interacting protein 1, isoform CRA_b [Rattus
norvegicus]
Length = 660
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 284/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + T LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>gi|289578776|ref|YP_003477403.1| ATPase AAA [Thermoanaerobacter italicus Ab9]
gi|289528489|gb|ADD02841.1| AAA ATPase central domain protein [Thermoanaerobacter italicus Ab9]
Length = 443
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 284/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KFV SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFVTFSAVLSGIKEIKEIMAKA-ELDAMHGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ ILLKRA+ D NGL G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTKEDLLILLKRALKDEQNGL----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + ++ + +GDARVALN LEI+ + A V ++G
Sbjct: 191 YKIGITEEQLKRIALFANGDARVALNTLEIAVMGAKV---------------TEGRR--- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 233 -IVTDDILADAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++RFASED+GLADP AL AV+ Y ACH++GMPEC+V LAQ YLALAPKS ++
Sbjct: 292 YIARRMIRFASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K E++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP
Sbjct: 352 YMAYNKAKKDAEETMA--ESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|254540120|ref|NP_084491.3| ATPase WRNIP1 [Mus musculus]
gi|73622086|sp|Q91XU0.2|WRIP1_MOUSE RecName: Full=ATPase WRNIP1; AltName: Full=Werner
helicase-interacting protein 1
gi|26334781|dbj|BAC31091.1| unnamed protein product [Mus musculus]
gi|74195651|dbj|BAE39633.1| unnamed protein product [Mus musculus]
gi|74215304|dbj|BAE41868.1| unnamed protein product [Mus musculus]
gi|74221135|dbj|BAE42069.1| unnamed protein product [Mus musculus]
gi|148700413|gb|EDL32360.1| Werner helicase interacting protein 1, isoform CRA_c [Mus musculus]
Length = 660
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 283/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 VFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>gi|26341102|dbj|BAC34213.1| unnamed protein product [Mus musculus]
Length = 660
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 283/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 VFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>gi|395853809|ref|XP_003799394.1| PREDICTED: ATPase WRNIP1 isoform 1 [Otolemur garnettii]
Length = 662
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 281/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ ++ +L RS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 223 PLADKMRPDTLQDYIGQSRVVGQETLFRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 282
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 283 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 342
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 343 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 402
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T V + A++ L DGDAR LN L+++ + ++
Sbjct: 403 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 456
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 457 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 516
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 517 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVATYQGCHFIGMPECEVLLAQ 576
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 577 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 636
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 637 MYSEP-VDQEYLPEELRGVDFF 657
>gi|37589162|gb|AAH58744.1| Wrnip1 protein, partial [Mus musculus]
Length = 526
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 283/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 87 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 146
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 147 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 206
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 207 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 266
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 267 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 320
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 321 VFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 380
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 381 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 440
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 441 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 500
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 501 MYSEP-VDQDYLPEELRGVDFF 521
>gi|431891048|gb|ELK01926.1| ATPase WRNIP1 [Pteropus alecto]
Length = 661
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 222 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 281
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 282 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 341
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 342 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 401
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T V + A++ L DGDAR LN L+++ + ++
Sbjct: 402 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLCS------RK 455
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D A++
Sbjct: 456 MFCKKSGQTYSPSRVLITENDVKEGLQKSHILYDRAGEEHYNCISALHKSMRGSDQSASL 515
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 516 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 575
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 576 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 635
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 636 MYSEP-VDQEYLPEELRGVDFF 656
>gi|291409441|ref|XP_002721014.1| PREDICTED: Werner helicase interacting protein [Oryctolagus
cuniculus]
Length = 589
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 281/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP ++ D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 150 PLADKMRPESLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 209
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 210 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 269
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS-- 299
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 270 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 329
Query: 300 -----------VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V + A++ L DGDAR LN L+++ + ++
Sbjct: 330 PSDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 383
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 384 MFCKKSGQAYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 443
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 444 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 503
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 504 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 563
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 564 MYSEP-VDQEYLPEELRGADFF 584
>gi|126322071|ref|XP_001368425.1| PREDICTED: ATPase WRNIP1 isoform 1 [Monodelphis domestica]
Length = 695
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/447 (49%), Positives = 287/447 (64%), Gaps = 28/447 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + + +GQ+ ++ +LLRS + SN +PS+I WGPPG GKTTLA I N S
Sbjct: 251 PLADKMRPATLQEYIGQNKVVGQETLLRSLLESNEIPSLILWGPPGCGKTTLAYIIANNS 310
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 311 KKNSMRFVTLSATSAKTSDVRDVIKQAQNEKNFFKRKTILFIDEIHRFNKSQQDTFLPHV 370
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV------------ 289
E G++ IGATTENPSF + LLSRCRV+ L L ++ +L RAV
Sbjct: 371 ECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSAEAMKTILMRAVSSLGLRVLDQGR 430
Query: 290 --DDVNNGLSKSVGGTRVE----VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV 343
D V++G S S + E + A+ L CDGDAR LN L++ A+ A +
Sbjct: 431 PTDSVSHGNSSSCSSSSSEPLVYIEDKAVNTLAYLCDGDARTGLNGLQL-AVQAKLGSRK 489
Query: 344 KEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND 403
K+ Q + L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D
Sbjct: 490 PFCKKTVQNYSGES-----VLITENDIKEGLQRSHILYDRAGEEHYNCISALHKSMRGSD 544
Query: 404 ADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECN 463
+A++YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL AV+ YQ CHF+GMPEC
Sbjct: 545 QNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTHAVAAYQGCHFIGMPECE 604
Query: 464 VILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKG 523
V+LAQCV Y A APKSI +Y A + +R G VP+HLRNAPT+LMK++GYGKG
Sbjct: 605 VLLAQCVVYFARAPKSIEVYNAYNNVKACLRNHQGPLPPVPMHLRNAPTRLMKDLGYGKG 664
Query: 524 YIYTP--DDPSAKQSFLPPSLEGYKFL 548
Y Y P DP +Q +L L G F
Sbjct: 665 YKYNPAYKDP-VEQEYLLEELRGIDFF 690
>gi|14714682|gb|AAH10482.1| Werner helicase interacting protein 1 [Mus musculus]
Length = 660
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 283/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>gi|196012762|ref|XP_002116243.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
gi|190581198|gb|EDV21276.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
Length = 478
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/435 (50%), Positives = 290/435 (66%), Gaps = 15/435 (3%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS- 181
PL++++RP + D +GQD +L + LRS + S + S+IFWGPPG GKTTLA I S
Sbjct: 43 PLADKIRPNVLTDYIGQDDVLGGKTSLRSLIESGDIHSMIFWGPPGCGKTTLANIIAKSG 102
Query: 182 -VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F+ LSA +SG + VR+ ++ A+K R N++T+LF+DE+HRFNK+QQD FLP
Sbjct: 103 KSKANMRFIQLSATSSGTQKVREVIDIAQKDRTMFNRQTILFMDEIHRFNKAQQDVFLPY 162
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN--GLSK 298
+E+G+IV IGATTENPSF L LLSRC V+TL L +V +LK A++++ + L
Sbjct: 163 VENGTIVLIGATTENPSFSLNNALLSRCHVITLQKLSSANVVTILKSALNNIEDYLDLDD 222
Query: 299 SVGGTRVEVNHD--AIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ--EDE 354
G + ++ D A++ L + CDGDAR ALN LE++ + ++ + +++ Q +DE
Sbjct: 223 FTTGNKYKIKADDQALKALGNFCDGDARKALNGLEMAIRS---KIIIYNNRDITQPIDDE 279
Query: 355 SDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
P + VT D E+ Q HL YDR+GEEHYN+ISALHKSMRG D +AA+YWL RM
Sbjct: 280 R---LPTIIAVTEKDVLESLQRSHLQYDRSGEEHYNIISALHKSMRGGDENAAMYWLCRM 336
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLA 474
L+GGEQP YIARRL+RFASEDVGLAD AL AV+ Y AC F+GMPEC V LAQ V YLA
Sbjct: 337 LKGGEQPTYIARRLIRFASEDVGLADNQALFIAVAAYHACQFIGMPECEVNLAQTVVYLA 396
Query: 475 LAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DPSA 533
APKS+ Y A +K I E G VPLHLRNAPT LM+++GYGKGY Y PD D
Sbjct: 397 RAPKSVECYMAYDRVKKNINEWKGPLPSVPLHLRNAPTSLMQKLGYGKGYKYNPDYDKPV 456
Query: 534 KQSFLPPSLEGYKFL 548
+Q +LP L F
Sbjct: 457 QQDYLPSCLLNIDFF 471
>gi|432916883|ref|XP_004079426.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Oryzias latipes]
Length = 586
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/456 (47%), Positives = 286/456 (62%), Gaps = 32/456 (7%)
Query: 114 TTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
+ AL + PL+E +RP + + GQ + +LLRS + S +PS+I WGPPG GKTT
Sbjct: 147 SRALFASNKPLAEALRPNTLEEYFGQSKAVGQQTLLRSLLESQEIPSVILWGPPGCGKTT 206
Query: 174 LAKAIVNSVAV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
LA I ++ + +FV LSA ++ +VR+ ++ A+ ++T+LF+DE+HRFNK
Sbjct: 207 LAHIIASASKKNGTARFVTLSATSASTSEVREVIKQAQNELRLCKRKTILFIDEIHRFNK 266
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV-- 289
SQQD+FLP +E G++ IGATTENPSF + LLSRCRVL L L + +L RA+
Sbjct: 267 SQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVLVLEKLSVEAMSSILNRAIAM 326
Query: 290 -------DDVNN---GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
D NN G +V + A++ + CDGDAR+ LN+L+++
Sbjct: 327 LGIKIGGQDSNNLKDGDQTDGSEAQVYIEQKALDTIAFLCDGDARIGLNSLQLA------ 380
Query: 340 RVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSM 399
V+ ++++ E +VT + KE Q H+ YD+AGEEHYN ISALHKSM
Sbjct: 381 ---VQAQTSLQKQQE--------VVVTEEHIKEGLQRSHILYDKAGEEHYNCISALHKSM 429
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+ +A++YWL RMLEGGE PLY+ARRL+RFASEDVGLADP AL QAVS +QACHFLGM
Sbjct: 430 RGSHENASLYWLGRMLEGGEDPLYVARRLIRFASEDVGLADPAALTQAVSAFQACHFLGM 489
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PEC VILAQCV YLA APKS+ IY+A + +R G VPLHLRNAPTKLMK++G
Sbjct: 490 PECEVILAQCVIYLARAPKSVEIYQAYSNVKACLRNHKGPLPSVPLHLRNAPTKLMKQLG 549
Query: 520 YGKGYIYTPD-DPSAKQSFLPPSLEGYKFLDWPKSN 554
Y KGY Y P +Q +LP L G F W S+
Sbjct: 550 YAKGYKYNPAFSRPVEQEYLPEELRGVNFFTWKGSH 585
>gi|256752628|ref|ZP_05493481.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748512|gb|EEU61563.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
CCSD1]
Length = 443
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 284/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KFV SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFVTFSAVLSGIKEIKEIMAKA-ELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ +LLKRA+ D GL G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDKERGL----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E++ D ++ + +GDARVALN LEI+ + A V +E E
Sbjct: 191 YDIEISGDQLKKIALFANGDARVALNTLEIAVMGAKV---------IEGE---------- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 232 RIVTDDILADAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++RFASED+GLADP AL AV+ Y ACH++G+PEC+V LAQ YLALAPKS ++
Sbjct: 292 YIARRMIRFASEDIGLADPQALEMAVAAYNACHYIGIPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K E++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP
Sbjct: 352 YMAYNKAKKDAEETIA--ESVPIHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|301789397|ref|XP_002930115.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Ailuropoda
melanoleuca]
Length = 618
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 179 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 238
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 239 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 298
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 299 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 358
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T V + A++ L DGDAR LN L+++ + ++
Sbjct: 359 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 412
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D A++
Sbjct: 413 MFCKKSGQTYSPSRVLITENDVKEGLQQSHILYDRAGEEHYNCISALHKSMRGSDQSASL 472
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 473 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 532
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 533 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 592
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 593 MYTEP-VDQEYLPEELRGVDFF 613
>gi|167037129|ref|YP_001664707.1| recombination factor protein RarA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115548|ref|YP_004185707.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166855963|gb|ABY94371.1| AAA ATPase, central domain protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928639|gb|ADV79324.1| AAA ATPase central domain protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 443
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 283/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KF+ SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFITFSAVLSGIKEIKEIMAKA-ELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ ILLKRA+ D NG G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLILLKRALKDEQNGF----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + ++ + +GDARVALN LEI+ + A V +E E
Sbjct: 191 YKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKV---------IEGE---------- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 232 RIVTDDILADAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++RFASED+GLADP AL AV+ Y ACH++G+PEC+V LAQ YLALAPKS ++
Sbjct: 292 YIARRMIRFASEDIGLADPQALEMAVAAYNACHYIGIPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K E++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP
Sbjct: 352 YMAYNKAKKDAEETIA--ESVPIHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|326391411|ref|ZP_08212948.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
JW 200]
gi|325992546|gb|EGD51001.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
JW 200]
Length = 443
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/427 (50%), Positives = 285/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KF+ SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFITFSAVLSGIKEIKEIMAKA-ELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ +LLKRA+ D GL G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDKERGL----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E++ D ++ + +GDARVALN LEI+ + A EV E ++
Sbjct: 191 YDIEISGDQLKKIALFANGDARVALNTLEIAVMAA-------EVIEGKR----------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 233 -IVTDDILADAMQKKTLLYDKEGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR++RFASED+GLADP AL AV+ Y ACH++GMPEC+V LAQ YLALAPKS ++
Sbjct: 292 YVARRMIRFASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K E++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP
Sbjct: 352 YVAYNKAKKDAEETIA--ESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|297568672|ref|YP_003690016.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296924587|gb|ADH85397.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 461
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/430 (50%), Positives = 281/430 (65%), Gaps = 19/430 (4%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+ERMRP ++D VGQ HLL+ + LL LPS++ WGPPG+GKTTLA+ +
Sbjct: 18 PTTPLAERMRPARLDDFVGQRHLLADDKLLAGLSRHGYLPSLLLWGPPGSGKTTLARILA 77
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
FV SAV SGVK++R+ VE +R++R +S + +VLFVDE+HRFNKSQQD+FLP
Sbjct: 78 GGSGAD--FVFFSAVLSGVKEIREIVERSRRIRAESGRGSVLFVDEIHRFNKSQQDAFLP 135
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I IGATTENPSFH+I PLLSRCRV+ LNPL D++I+L+RA+ D GL K
Sbjct: 136 HVEAGLITLIGATTENPSFHVIAPLLSRCRVIVLNPLAAEDLQIILERALSDEERGLGK- 194
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
R++++ +A + L S DGDAR LN+LEI+A A ++ + + G
Sbjct: 195 ---LRLKISREAADHLISIADGDARSLLNSLEIAAALA------QDQARGQTASQEIGGE 245
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ L T++ EA Q L YD GEEHYNLISALHKS+R +D D A+YWL RML GE
Sbjct: 246 VQIGLTTVE---EAIQRHSLRYDADGEEHYNLISALHKSLRDSDPDGALYWLGRMLAAGE 302
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+PLYIARRL+RFASED+G ADP AL AV ++ H LG PE + LAQ V YLA APKS
Sbjct: 303 EPLYIARRLIRFASEDIGNADPQALGLAVQARESYHLLGSPEGELALAQAVVYLATAPKS 362
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSF 537
++Y A I++S + VPLHLRNAPTKLM+++ YGK Y Y DD Q
Sbjct: 363 NAVYAAYNQVLATIKKS--GSLPVPLHLRNAPTKLMRDLNYGKDYQYAHDDRLGLVDQQH 420
Query: 538 LPPSLEGYKF 547
LP L G +F
Sbjct: 421 LPDQLAGTRF 430
>gi|332246191|ref|XP_003272236.1| PREDICTED: ATPase WRNIP1 isoform 1 [Nomascus leucogenys]
Length = 638
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 199 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 258
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 259 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 318
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 319 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 378
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 379 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 432
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 433 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 492
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 493 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 552
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 553 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 612
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 613 MYSEP-VDQEYLPEELRGVDFF 633
>gi|154757528|gb|AAI51634.1| WRNIP1 protein [Bos taurus]
Length = 545
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/442 (49%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D VGQ + P +LLRS + ++ +PS+I WGPPG GKTTLA I N S
Sbjct: 106 PLADTMRPDALQDFVGQGRAVGPETLLRSLLEASEVPSLILWGPPGCGKTTLAHIIANNS 165
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 166 KKHSIRFVTLSATSAKTTDVRDVIKQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPHV 225
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS-- 299
E G+I IGATTENPSF + LLSRCRV+ L L V +L RAV+ + + S
Sbjct: 226 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAVVTILMRAVNSLGIQVLDSSR 285
Query: 300 -----------VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ V + A++ L DGDAR LN L+++ + ++
Sbjct: 286 PADPLSHGSNSSSESSVLIEDKAVDTLAHLSDGDARAGLNGLQLAVLARL------SARK 339
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ P LVT D KE Q H+ YDRAGEEHYN ISALHKSMRG+D+ AA+
Sbjct: 340 TFGKKGGQSYPPSRVLVTESDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDSSAAL 399
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWL RMLEGGE PLY+ARRLVRFASEDVGLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 400 YWLGRMLEGGEDPLYVARRLVRFASEDVGLADPSALTQAVATYQGCHFIGMPECEVLLAQ 459
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV YLA APKS+ +Y A + +R G VPLHLRNAPT+LMK++GYG+GY Y P
Sbjct: 460 CVVYLARAPKSVEVYSAYNNVKACLRGHQGPLPPVPLHLRNAPTRLMKDLGYGQGYKYNP 519
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P +Q +LP L G F
Sbjct: 520 AYSEP-VEQEYLPQELRGVDFF 540
>gi|397467866|ref|XP_003805621.1| PREDICTED: ATPase WRNIP1 [Pan paniscus]
Length = 616
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 177 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 236
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 237 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 296
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 297 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 356
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 357 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 410
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 411 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 470
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 471 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 530
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 531 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 590
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 591 MYSEP-VDQEYLPEELRGVDFF 611
>gi|380814804|gb|AFE79276.1| ATPase WRNIP1 isoform 1 [Macaca mulatta]
gi|383420097|gb|AFH33262.1| ATPase WRNIP1 isoform 1 [Macaca mulatta]
Length = 665
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 226 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++TVLF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTVLFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>gi|14349164|dbj|BAB60708.1| Werner helicase interacting protein [Mus musculus]
Length = 660
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 282/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGEETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + K+
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSKK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 VFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GM EC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMHECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>gi|297676986|ref|XP_002816398.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1 [Pongo abelii]
Length = 658
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 219 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 278
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 279 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 338
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 339 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 398
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 399 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 452
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 453 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 512
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 513 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 572
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 573 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 632
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 633 MYSEP-VDQEYLPEELRGVDFF 653
>gi|167039928|ref|YP_001662913.1| recombination factor protein RarA [Thermoanaerobacter sp. X514]
gi|300915273|ref|ZP_07132587.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
gi|307724748|ref|YP_003904499.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
sp. X513]
gi|166854168|gb|ABY92577.1| AAA ATPase, central domain protein [Thermoanaerobacter sp. X514]
gi|300888549|gb|EFK83697.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
gi|307581809|gb|ADN55208.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X513]
Length = 443
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 283/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KFV SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFVTFSAVLSGIKEIKEIMAKA-ELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ ILLKRA+ D NG G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLILLKRALKDEQNGF----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + ++ + +GDARVALN LEI+ + A V +E E
Sbjct: 191 YKIGITDEQLKKIALFANGDARVALNTLEIAVMGAKV---------IEGE---------- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 232 RIVTDDILADAMQKKTLLYDKQGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR++RFASED+GLADP AL AV+ Y ACH++GMPEC+V LAQ YLALAPKS ++
Sbjct: 292 YVARRMIRFASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K +++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP
Sbjct: 352 YVAYNKAKKDAEKTIA--ESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|8886769|gb|AAF80563.1|AF218313_1 putative helicase RUVBL [Homo sapiens]
Length = 445
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 6 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 65
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 66 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 125
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 126 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 185
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 186 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 239
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 240 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 299
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 300 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 359
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 360 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 419
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 420 MYSEP-VDQEYLPEELRGVDFF 440
>gi|62089026|dbj|BAD92960.1| Werner helicase interacting protein isoform 1 variant [Homo
sapiens]
Length = 646
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 207 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 266
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 267 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 326
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 327 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 386
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 387 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 440
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 441 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 500
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 501 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 560
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 561 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 620
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 621 MYSEP-VDQEYLPEELRGVDFF 641
>gi|109069425|ref|XP_001090684.1| PREDICTED: ATPase WRNIP1 isoform 3 [Macaca mulatta]
Length = 665
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 226 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>gi|348550575|ref|XP_003461107.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Cavia
porcellus]
Length = 637
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 282/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLR + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 198 PLADKMRPDTLQDYIGQSRAVGQETLLRPLLETNEIPSLILWGPPGCGKTTLAHIIANNS 257
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 258 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 317
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-NGLSKSV 300
E G++ IGATTENPSF + LLSRCRV+ L L + +L RA++ + + L S
Sbjct: 318 ECGTLTLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 377
Query: 301 GG------------TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
G V + A++ L DGDAR LN L+++ + ++
Sbjct: 378 PGDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 431
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 432 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 491
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 492 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 551
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 552 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 611
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P +Q +LP L G F
Sbjct: 612 MYSEP-VEQEYLPEELRGVDFF 632
>gi|355748195|gb|EHH52678.1| Werner helicase-interacting protein 1, partial [Macaca
fascicularis]
Length = 456
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG G+TTLA I N S
Sbjct: 17 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGCGRTTLAHIIANNS 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++TVLF+DE+HRFNKSQQD+FLP +
Sbjct: 77 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTVLFIDEIHRFNKSQQDTFLPHV 136
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 137 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 196
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 197 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 250
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 251 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 310
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 311 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 370
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 371 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 430
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 431 MYSEP-VDQEYLPEELRGVDFF 451
>gi|18426902|ref|NP_064520.2| ATPase WRNIP1 isoform 1 [Homo sapiens]
gi|73622085|sp|Q96S55.2|WRIP1_HUMAN RecName: Full=ATPase WRNIP1; AltName: Full=Werner
helicase-interacting protein 1
gi|119575489|gb|EAW55085.1| Werner helicase interacting protein 1, isoform CRA_a [Homo sapiens]
gi|410223076|gb|JAA08757.1| Werner helicase interacting protein 1 [Pan troglodytes]
gi|410261712|gb|JAA18822.1| Werner helicase interacting protein 1 [Pan troglodytes]
gi|410289226|gb|JAA23213.1| Werner helicase interacting protein 1 [Pan troglodytes]
gi|410334991|gb|JAA36442.1| Werner helicase interacting protein 1 [Pan troglodytes]
Length = 665
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>gi|345018073|ref|YP_004820426.1| hypothetical protein Thewi_1747 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033416|gb|AEM79142.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1747
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 443
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 285/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N
Sbjct: 18 PLADRMRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN-- 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KF+ SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 MTNSKFITFSAVLSGIKEIKEIMAKA-ELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ +LLKRA+ D GL G
Sbjct: 135 KGNIILIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDKERGL----GM 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E++ D ++ + +GDARVALN LEI+ + A EV E ++
Sbjct: 191 YDIEISGDQLKKIALFANGDARVALNTLEIAVMAA-------EVIEGKR----------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PL
Sbjct: 233 -IVTDDILADAMQKKTLLYDKEGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR++RFASED+GLADP AL AV+ Y ACH++GMPEC+V LAQ YLALAPKS ++
Sbjct: 292 YVARRMIRFASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K +++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP
Sbjct: 352 YVAYNKAKKDAEDTIA--ESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPD 409
Query: 541 SLEGYKF 547
+L+ K+
Sbjct: 410 NLKDRKY 416
>gi|296197529|ref|XP_002746322.1| PREDICTED: ATPase WRNIP1 isoform 1 [Callithrix jacchus]
Length = 666
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 227 PLADKMRPDTLQDYFGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 286
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 287 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 346
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 347 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 406
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 407 PTDPLSHSSNSSSEPAIFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 460
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 461 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 520
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 521 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 580
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI ++ A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 581 CVVYFARAPKSIEVFSAYNNVKACMRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 640
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 641 MYSEP-VDQEYLPEELRGVDFF 661
>gi|410040163|ref|XP_003950752.1| PREDICTED: ATPase WRNIP1 [Pan troglodytes]
Length = 665
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>gi|326917076|ref|XP_003204830.1| PREDICTED: ATPase WRNIP1-like [Meleagris gallopavo]
Length = 440
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/413 (52%), Positives = 269/413 (65%), Gaps = 28/413 (6%)
Query: 155 SNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
S+ +PSII WGPPG GKTTLA I NS +FV LSA ++ DVRD + A+ +
Sbjct: 32 SHEIPSIILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTNDVRDVISQAQNEKR 91
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTL 273
++T+LF+DE+HRFNKSQQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L
Sbjct: 92 LFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVL 151
Query: 274 NPLKPHDVEILLKRAVDDVN-------NGLSKSVGGTR-------VEVNHDAIEFLCSNC 319
L +E +L RAV + N S S G+ V V A+ L C
Sbjct: 152 EKLSVEAMEAILLRAVKSLGVQVLGQGNQHSSSATGSSDESSELPVYVEEKALSTLAYLC 211
Query: 320 DGDARVALNALEIS--AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377
DGDAR LN L+++ A AA + V + GCS L+T + KE Q
Sbjct: 212 DGDARTGLNGLQLAVQARLAAGKTTVLSF--------TKGCSVDGVLITEEHVKEGLQRS 263
Query: 378 HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVG 437
H+ YDRAGEEHYN ISALHKSMRG+D +A++YWLARMLEGGE PLY+ARRLVRFASED+G
Sbjct: 264 HILYDRAGEEHYNCISALHKSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIG 323
Query: 438 LADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESV 497
LADPLAL QAV+ YQ CHF+GMPEC VILAQCV Y A APKSI +YRA G ++ +R
Sbjct: 324 LADPLALTQAVAAYQGCHFIGMPECEVILAQCVVYFARAPKSIEVYRAYGNVKECLRMHT 383
Query: 498 GQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFL 548
G VPLHLRNAPT+LMK++GYGKGY Y P +P +Q +LP L+G F
Sbjct: 384 GPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYKEP-VEQDYLPEELKGTDFF 435
>gi|403271130|ref|XP_003927491.1| PREDICTED: ATPase WRNIP1 [Saimiri boliviensis boliviensis]
Length = 570
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 131 PLADKMRPDTLQDYFGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 190
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 191 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 250
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 251 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 310
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 311 PTDPLSHSSNSSSEPAIFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 364
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 365 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 424
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 425 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 484
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI ++ A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 485 CVVYFARAPKSIEVFSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 544
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 545 MYSEP-VDQEYLPEELRGVDFF 565
>gi|345796999|ref|XP_535865.3| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1 [Canis lupus
familiaris]
Length = 585
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 279/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+ +MRP + D +GQ + ++LLRS + + +PS+I WGPPG GKTTLA I N S
Sbjct: 146 PLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKTTLAHIIANNS 205
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 206 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 265
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 266 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 325
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T V + A++ L DGDAR LN L+++ + ++
Sbjct: 326 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 379
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D A++
Sbjct: 380 MFCKKSGQNYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQSASL 439
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 440 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 499
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 500 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 559
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 560 MYSEP-VDQEYLPEELRGVDFF 580
>gi|219849982|ref|YP_002464415.1| recombination factor protein RarA [Chloroflexus aggregans DSM 9485]
gi|219544241|gb|ACL25979.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485]
Length = 485
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/430 (50%), Positives = 285/430 (66%), Gaps = 28/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++ VGQ H++ LLR A+ +++L S+I WGPPG+GKTTLA+ I NS
Sbjct: 23 APLAARMRPRTLDEFVGQTHIIGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIANS 82
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAV++GV D+R V++A+ +RTV+F+DE+HRFNKSQQD+ LP +
Sbjct: 83 T--NAHFEPLSAVSAGVNDLRRVVQEAKDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYV 140
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENPSF + LLSR RV TL L ++ IL+ RA+ D GL G
Sbjct: 141 EDGTIILIGATTENPSFEVNAALLSRARVFTLEALTDEEIGILIDRALSDRERGL----G 196
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G ++ + DA ++L + +GDAR ALNALE AA R + E
Sbjct: 197 GMKIMLASDARKYLINMSNGDARTALNALE-----AAARSKPPAIGETR----------- 240
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L+T+DD ++A Q + + YD+ GE HY+ ISALHKS+R +D D A+YWL RML+GGE P
Sbjct: 241 --LITVDDIRDALQSRAVRYDKRGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDP 298
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRLVR A EDVGLADP AL Q ++ QA HFLG PE + L Q V YL LAPKS +
Sbjct: 299 LYIARRLVRIAVEDVGLADPQALPQTIAAQQAVHFLGQPEGELALVQAVVYLCLAPKSNA 358
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLP 539
+YRA A Q+ + E+ +NE VPLHLRNAPT+LMK +GYG+GY Y D P + Q LP
Sbjct: 359 LYRAYNAVQRDVAET--RNEPVPLHLRNAPTELMKRLGYGRGYEYAHDLPEGRSDQEHLP 416
Query: 540 PSLEGYKFLD 549
P+L G + +
Sbjct: 417 PNLVGRIYYE 426
>gi|189425566|ref|YP_001952743.1| recombination factor protein RarA [Geobacter lovleyi SZ]
gi|189421825|gb|ACD96223.1| AAA ATPase central domain protein [Geobacter lovleyi SZ]
Length = 435
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/438 (50%), Positives = 283/438 (64%), Gaps = 35/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ + GQ+HLL P LR + +++LPS+IFWGPPG GKTTLA I +
Sbjct: 15 PLAERMRPRSLGEFCGQEHLLGPGKALRKMIEADQLPSMIFWGPPGCGKTTLAHIIAHET 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S +FV SA+ +GVK++R+ +DA RT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 75 --SSRFVFFSAIMAGVKEIREIFKDAEAY-AAGGTRTILFVDEIHRFNKAQQDAFLPAVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRCRVL L L+ ++ LL++ + D GL GG
Sbjct: 132 KGLVTIIGATTENPSFEVIAPLLSRCRVLRLKQLEADELATLLQKTLQDTEKGL----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + +A+ FL GD R ALN LE++A A DG
Sbjct: 188 LQLAIEDEALTFLSEAAQGDGRKALNTLEVAAGLA-----------------QDG----- 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L++L+ A+EA Q K L YD+ GEEHYN+ISA KSMRG+D DAA+YWLARMLE GE PL
Sbjct: 226 -LISLEIAQEAMQQKALLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+I RR++ ASED+G ADP AL AVS QA +GMPE +IL Q V YLA APKS +
Sbjct: 285 FILRRMIILASEDIGNADPRALQMAVSALQAFQMVGMPEGRIILGQAVTYLATAPKSNAS 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y + AA +R+S G E VPLH+RNAPTKLMKE+GY +GY Y D S +Q +LP
Sbjct: 345 YLGIDAALSEVRKS-GALE-VPLHIRNAPTKLMKELGYHQGYQYAHDFSSGYVQQEYLPE 402
Query: 541 SLEGYKFLDWPKSNTTDK 558
L+G KF D PK + +K
Sbjct: 403 RLQGRKFYD-PKGHGYEK 419
>gi|355561279|gb|EHH17911.1| Werner helicase-interacting protein 1, partial [Macaca mulatta]
Length = 448
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 279/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG KTTLA I N S
Sbjct: 9 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGWRKTTLAHIIANNS 68
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++TVLF+DE+HRFNKSQQD+FLP +
Sbjct: 69 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTVLFIDEIHRFNKSQQDTFLPHV 128
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 129 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 188
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 189 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 242
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 243 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 302
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 303 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 362
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 363 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 422
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 423 MYSEP-VDQEYLPEELRGVDFF 443
>gi|62898918|dbj|BAD97313.1| Werner helicase interacting protein isoform 1 variant [Homo
sapiens]
Length = 665
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEE+YN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEYYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>gi|426351464|ref|XP_004043264.1| PREDICTED: ATPase WRNIP1 [Gorilla gorilla gorilla]
Length = 563
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + ++ +PS+I WGPPG GKTTLA I NS
Sbjct: 124 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETHEIPSLILWGPPGCGKTTLAHIIASNS 183
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 184 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 243
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 244 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 303
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 304 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 357
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 358 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 417
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 418 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 477
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 478 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 537
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 538 MYSEP-VDQEYLPEELRGVDFF 558
>gi|206895474|ref|YP_002247556.1| ATPase AAA [Coprothermobacter proteolyticus DSM 5265]
gi|206738091|gb|ACI17169.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
5265]
Length = 459
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 288/427 (67%), Gaps = 29/427 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQD +LLR + ++L S++ WGPPG GKT++A I N+
Sbjct: 19 PLAERMRPRTLDEIVGQDKAFGKGTLLRKLIEEDKLTSLVLWGPPGVGKTSIAMVIANTT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+K++++ +EDA +++ +RTV+FVDE+H FNK+QQD+FLP +E
Sbjct: 79 KA--RFLRFSAVTSGIKEIKEVLEDA-EVQFNMGRRTVIFVDEIHHFNKTQQDAFLPYVE 135
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++V I ATTENPSF +I+PLLSR +V+ L PL+ D++ +L RA+ D GL G
Sbjct: 136 KGAVVLICATTENPSFEIISPLLSRSKVVVLEPLEAEDIKTILYRALADKERGL----GN 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV + + + + DGDAR+ALN LE++ +D S +
Sbjct: 192 ERVVITDEQLMRIAVYSDGDARIALNTLEMAVFG------------------TDPNSEGI 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+++ + EA Q K L YD+AGEEHYNLISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 234 RVISDEVISEALQKKTLLYDKAGEEHYNLISALHKSMRNSDPDAALYWLARMLEAGEDPL 293
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VRFASEDVG+ADP AL QAV+ + A +++GMPEC LAQ V YL+LAPKS S+
Sbjct: 294 YVARRIVRFASEDVGMADPQALMQAVAAFDAANYIGMPECTANLAQAVVYLSLAPKSNSL 353
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A++ E++ E VPLHLRNAPT+LMKE+GYGK Y Y+ D + A LPP
Sbjct: 354 YVGYEKAKQDALETMA--EPVPLHLRNAPTRLMKEVGYGKDYKYSHDYEEHIADMECLPP 411
Query: 541 SLEGYKF 547
+L G ++
Sbjct: 412 NLLGKRY 418
>gi|14349166|dbj|BAB60709.1| Werner helicase interacting protein [Homo sapiens]
Length = 665
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 278/442 (62%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+ WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLNLWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFMGMPECEVFLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>gi|352518599|ref|YP_004887916.1| ATPase [Tetragenococcus halophilus NBRC 12172]
gi|348602706|dbj|BAK95752.1| ATPase [Tetragenococcus halophilus NBRC 12172]
Length = 440
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 285/427 (66%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP I D VGQ+ LL +LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 16 PLASRVRPKTIGDFVGQEQLLGQGKILREIIEQDQVSSMIFWGPPGVGKTTLAEIIARQT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ +SAV SG+K ++D +E+A R ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 KTN--FITVSAVNSGIKKIKDLMEEAETNR-DYGEKTIIFVDEIHRFNKAQQDAFLPYVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IG TTENPSF + + LLSRC+V L L D+ LLKRA+ + + G
Sbjct: 133 QGSIILIGTTTENPSFEVNSALLSRCKVFVLKELTVSDIVELLKRAIKNPD-----GFGD 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ DAIE + +GDAR ALN LE++ + E DG S
Sbjct: 188 YQITIDDDAIEAIARFANGDARNALNTLEMAVLNG----------------EKDGNS--- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + ++ K L YD++GEEHYN+ISALHKSMR +D +AAIYWLARMLEGGE PL
Sbjct: 229 ISITTEALEQIINKKSLLYDKSGEEHYNIISALHKSMRNSDVNAAIYWLARMLEGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVGLAD ALN AV+ +QAC FLGMPEC+V L + V YL+LAPKS ++
Sbjct: 289 YVARRLVRFASEDVGLADTNALNVAVNVFQACQFLGMPECDVHLTELVIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSFLPP 540
Y+A ++ I++SV NE VPL +RNAPT LMK++GYGK Y Y +D + +PP
Sbjct: 349 YKARLNVEQDIKDSV--NEPVPLQVRNAPTNLMKDLGYGKDYQYAHEQEDKLSTMKTMPP 406
Query: 541 SLEGYKF 547
SLEG+++
Sbjct: 407 SLEGHEY 413
>gi|451948733|ref|YP_007469328.1| AAA ATPase [Desulfocapsa sulfexigens DSM 10523]
gi|451908081|gb|AGF79675.1| AAA ATPase [Desulfocapsa sulfexigens DSM 10523]
Length = 443
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/441 (50%), Positives = 284/441 (64%), Gaps = 36/441 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ERMRP ++ ++VGQ+ +L LL S + S LPS+I WGPPGTGKTTLA+ +
Sbjct: 6 NSPLAERMRPQSLTEIVGQEDILGKGKLLESMLGSGTLPSLILWGPPGTGKTTLARILAR 65
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S S FV SAV SGVK+VR VE A K R N+ T+ F+DE+HRFNK QQD+FLP
Sbjct: 66 ST--SAHFVYFSAVLSGVKEVRKIVEQAEKQREIENRGTIFFIDEIHRFNKGQQDAFLPH 123
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G IGATTENPSF +I PLLSRC+VL L+PL ++ +L+RA+D+ GL
Sbjct: 124 VENGLFTLIGATTENPSFQIIAPLLSRCKVLVLSPLSKANLGTILQRALDNPKQGL---- 179
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G T + +++++E L + DGDAR LN LEI+A R + S+G SP
Sbjct: 180 GRTDLFFDNNSLELLTTLADGDARKGLNTLEIAATIVLHR-------KKNDTAASNGISP 232
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
DD EA Q L YDR G+EH+NLISALHKS+R +D D ++YWL RMLE GE
Sbjct: 233 -------DDILEAAQQTALRYDRDGDEHFNLISALHKSLRDSDPDGSLYWLYRMLESGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYI RRL+RFASED+GL+DP AL +SC A H LG+PE + +AQ VAYLA APKS
Sbjct: 286 PLYICRRLIRFASEDIGLSDPQALIHTISCRDAYHTLGLPEGKLAIAQAVAYLASAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT------------- 527
SIYRA K IR++ + GVPLHLRNAPT+LMKE+ YGK Y Y
Sbjct: 346 SIYRAESDVCKCIRQT--GSLGVPLHLRNAPTRLMKELNYGKEYKYAHDADNALVAQDHL 403
Query: 528 PDDPSAKQSFLPPSLEGYKFL 548
PD+ KQ F P+ GY+ L
Sbjct: 404 PDEIKEKQ-FYFPTTRGYEAL 423
>gi|410923741|ref|XP_003975340.1| PREDICTED: ATPase WRNIP1-like [Takifugu rubripes]
Length = 594
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/448 (47%), Positives = 284/448 (63%), Gaps = 24/448 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++ +RP + + GQ+ ++ +L RS + + +PS I WGPPG GKTTLA I +
Sbjct: 156 PLADILRPNTLEEYFGQNKVIGQQTLFRSLLEAQEIPSFILWGPPGCGKTTLAHIIASKC 215
Query: 183 AV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +FV +SA ++ DVR ++ A+ ++T+LF+DE+HRFNKSQQD+FLP
Sbjct: 216 KEKGTARFVTMSATSASTNDVRGVIKQAQNELRLCKRKTILFIDEIHRFNKSQQDTFLPH 275
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV----------- 289
+E G+++ IGATTENPSF + + LLSRCRVL L L + +L RAV
Sbjct: 276 VECGTVILIGATTENPSFQVNSALLSRCRVLVLEKLSVEAMASILDRAVATLGIRVLEQD 335
Query: 290 DDVNNGLSKSVGGT-RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V + ++VG R+ + A++ + CDGDAR LN+L++ A+ A V ++
Sbjct: 336 STVPSEDGQTVGQEPRIFIERKAVDTVAHLCDGDARTGLNSLQL-AVQARVHASQADIS- 393
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
G SP V LV KE Q H+ YD+AGEEHYN ISALHKSMRG+D +A++
Sbjct: 394 ------GQGTSP-VILVKEQHIKEGLQRSHILYDKAGEEHYNCISALHKSMRGSDENASL 446
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWL RMLEGGE P+Y+ARR+VRFASEDVGLADP AL QAVS +QACHF+GMPEC VILAQ
Sbjct: 447 YWLGRMLEGGEDPIYVARRMVRFASEDVGLADPAALPQAVSAFQACHFIGMPECEVILAQ 506
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
C YLA APKS+ +Y+A + +R G VPLHLRNAPT+LMK++GY KGY Y P
Sbjct: 507 CAIYLARAPKSVDVYKAYANVKACLRNHKGPLPPVPLHLRNAPTRLMKDLGYAKGYKYNP 566
Query: 529 D-DPSAKQSFLPPSLEGYKFLDWPKSNT 555
+Q +LP L+G F W + T
Sbjct: 567 AFSGPVEQEYLPEELQGVDFFTWSPAET 594
>gi|392940236|ref|ZP_10305880.1| AAA ATPase [Thermoanaerobacter siderophilus SR4]
gi|392291986|gb|EIW00430.1| AAA ATPase [Thermoanaerobacter siderophilus SR4]
Length = 421
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/422 (50%), Positives = 280/422 (66%), Gaps = 30/422 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP +++ VGQ+HLL LLR + + + S+I WGPPG GKTTLA I N + K
Sbjct: 1 MRPKTLDEFVGQEHLLGKGKLLRELIEKDNITSMILWGPPGVGKTTLAMIIAN--MTNSK 58
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
F+ SAV SG+K++++ + A +L RTV+F+DE+HRFNK+QQD+FLP +E G+I+
Sbjct: 59 FITFSAVLSGIKEIKEIMAKA-ELDAMYGTRTVVFIDEIHRFNKAQQDAFLPHVEKGNII 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
IGATTENPSF + + LLSR +V + PL D+ +LLKRA+ D GL G +E+
Sbjct: 118 LIGATTENPSFEVNSALLSRSKVFVMKPLTEEDLLVLLKRALRDKERGL----GMYDIEI 173
Query: 308 NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367
+ D ++ + +GDARVALN LEI+ + A EV E ++ +VT
Sbjct: 174 SGDQLKKIALFANGDARVALNTLEIAVMAA-------EVIEGKR------------IVTD 214
Query: 368 DDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427
D +A Q K L YD+ GEEHYNLISA HKS+R +D DAA+YWLARMLE GE PLY+ARR
Sbjct: 215 DILADAMQKKTLLYDKEGEEHYNLISAFHKSLRNSDWDAAVYWLARMLEAGEDPLYVARR 274
Query: 428 LVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487
++RFASED+GLADP AL AV+ Y ACH++GMPEC+V LAQ YLALAPKS ++Y A
Sbjct: 275 MIRFASEDIGLADPQALEMAVAAYNACHYIGMPECSVNLAQVAIYLALAPKSNAVYVAYN 334
Query: 488 AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGY 545
A+K E++ E VP+HLRNAPTKLMKE+GYGKGY Y D + LP +L+
Sbjct: 335 KAKKDAEETIA--ESVPMHLRNAPTKLMKELGYGKGYKYAHDFEEKVTDMQCLPDNLKDR 392
Query: 546 KF 547
K+
Sbjct: 393 KY 394
>gi|269926092|ref|YP_003322715.1| AAA ATPase [Thermobaculum terrenum ATCC BAA-798]
gi|269789752|gb|ACZ41893.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 423
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/427 (51%), Positives = 289/427 (67%), Gaps = 33/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP NI+++VGQ+HLL P LR+A+ + +PSII WGPPGTGKT+LA AI +
Sbjct: 19 PLAARMRPRNIDEIVGQEHLLGPGKPLRAAIERDSIPSIILWGPPGTGKTSLAMAIAETT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S FV LSAV+ GV ++R +E A +L+ KRT++F+DE+HRFNK+QQD+ LP +E
Sbjct: 79 --SSNFVHLSAVSVGVPELRRVIESAIRLKRNLRKRTIVFLDEIHRFNKAQQDAVLPHVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSI IGATTENPSF + + LLSRCRV LNPL ++++LKRA++D GL G
Sbjct: 137 NGSITLIGATTENPSFEVNSALLSRCRVYVLNPLSEEHIKLILKRAIEDKERGL----GS 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++V+ A+EFL +GDAR+AL ALE++A A +DG
Sbjct: 193 YALQVDDVALEFLADLANGDARIALTALEMAARVA-----------------NDGH---- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D +E Q K L YD++G++HY+LISALHKS+R +D D ++YWL RMLE GE PL
Sbjct: 232 --IDVDLIREVVQRKVLLYDKSGDQHYDLISALHKSIRDSDPDGSLYWLGRMLEAGEDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+R A+EDVG+ADP AL AV+ QA HF+GMPE N+ LA+ V YL APKS ++
Sbjct: 290 YIARRLIRIATEDVGMADPNALVVAVAAQQAVHFVGMPEGNLALAEAVVYLCKAPKSNAL 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPP 540
YRA ++ I + +NE VPLHLRNAPT LMK +GYG Y Y D P+AK Q LP
Sbjct: 350 YRAYEKVKEDIETT--RNEPVPLHLRNAPTSLMKALGYGMDYKYAHDFPNAKVDQEHLPE 407
Query: 541 SLEGYKF 547
SL G K+
Sbjct: 408 SLRGRKY 414
>gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4]
gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4]
Length = 435
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/433 (48%), Positives = 279/433 (64%), Gaps = 33/433 (7%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ APL+ERMRP + + VGQ+HLL P LLR + +++L S+IFWGPPG+GKTTLA+ I
Sbjct: 13 LKEAPLAERMRPRTLAEYVGQEHLLGPGKLLRQLIETDQLTSLIFWGPPGSGKTTLARII 72
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
A F+ SA+ SG+K++R+ V++A +R KRT+LFVDE+HRFNKSQQD+FL
Sbjct: 73 AG--ATKSHFIFFSAILSGIKEIREIVKEADDIRKFHGKRTILFVDEIHRFNKSQQDAFL 130
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G IGATTENPSF +I PLLSRC+VL LNPL ++ +L++A+ D GL
Sbjct: 131 PYVERGVFTIIGATTENPSFEVIAPLLSRCKVLVLNPLTEEEITGILRQALADKERGL-- 188
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G + + DA+ F+ GDARVALN LE A R+ S+G
Sbjct: 189 --GALDLAIEDDALTFMAEQAGGDARVALNTLE-----TASRLT------------SNGV 229
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
V+LD A+EA Q K L YD+ GEEHYN+ISA KSMRG+D D A+YWLARM+E G
Sbjct: 230 ------VSLDTAREAVQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAG 283
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P++I RR+V ASED+G ADP AL AV+ Q +GMPE +I+ Q V YLA APK
Sbjct: 284 EDPIFILRRMVILASEDIGNADPRALQVAVTALQGFQLVGMPEGRIIIGQAVTYLATAPK 343
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQS 536
S + Y + AA +R+S VPLH+RNAPT+LMK++GYG GY Y D + Q
Sbjct: 344 SNASYVGIDAALAEVRKSGALP--VPLHIRNAPTRLMKDLGYGTGYRYAHDYAEGYVAQD 401
Query: 537 FLPPSLEGYKFLD 549
+LP ++G K+ D
Sbjct: 402 YLPDQIKGRKYYD 414
>gi|420146306|ref|ZP_14653733.1| Recombination protein MgsA [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398401995|gb|EJN55397.1| Recombination protein MgsA [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 443
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/431 (49%), Positives = 284/431 (65%), Gaps = 35/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP + + GQ HLL+P +LR + ++L S+IFWGPPG GKTTLA+ I N
Sbjct: 14 NSPLANRVRPQTLAEFSGQQHLLAPGKILREIIDHDQLSSMIFWGPPGVGKTTLARIIAN 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
FV SAVTSG+KD+R +E+A R + +RT++FVDE+HRFNK+QQD+FLP
Sbjct: 74 QT--KSHFVTFSAVTSGIKDIRKIMEEAEMNR-EIGERTIVFVDEIHRFNKAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L+ L+ D+ LL +A+ + +
Sbjct: 131 VERGSIILIGATTENPSFEINSALLSRCKVFVLHELQVSDIVALLTKALQN-----PHAF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V +N DA++ L +GDARVALN LE++ + A + +D+
Sbjct: 186 PDLTVNINTDALQLLAEFANGDARVALNTLEMAVLNA------------DHQDKK----- 228
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
VT+D A + K L YD+ GEEHYN+ISALHKSMR +D +AAIYWL RML GG
Sbjct: 229 ----VTIDTAALSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVNAAIYWLTRMLTGG 284
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARRLVRFASED+GLAD AL+ AV +QAC FLGMPECNV L + V YL+LAPK
Sbjct: 285 EDPLYIARRLVRFASEDIGLADTRALSLAVDVFQACQFLGMPECNVHLTEAVIYLSLAPK 344
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF- 537
S ++Y A A + ++++ NE VPL +RNAPT LMKE+GYG Y Y D +
Sbjct: 345 SNAVYAATEAVKTDVKKT--GNEPVPLQIRNAPTGLMKELGYGADYQYAHDSQEKLTTMK 402
Query: 538 -LPPSLEGYKF 547
+PP+LEG+++
Sbjct: 403 TMPPALEGHEY 413
>gi|336392237|ref|ZP_08573636.1| recombination factor protein RarA [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 443
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/431 (49%), Positives = 284/431 (65%), Gaps = 35/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP + + GQ HLL+P +LR + ++L S+IFWGPPG GKTTLA+ I N
Sbjct: 14 NSPLANRVRPQTLAEFSGQQHLLAPGKILREIIDHDQLSSMIFWGPPGVGKTTLARIIAN 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
FV SAVTSG+KD+R +E+A R + +RT++FVDE+HRFNK+QQD+FLP
Sbjct: 74 QT--KSHFVTFSAVTSGIKDIRKIMEEAEMNR-EIGERTIVFVDEIHRFNKAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L+ L+ D+ LL +A+ + +
Sbjct: 131 VERGSIILIGATTENPSFEINSALLSRCKVFVLHELQVSDIVALLTKALQN-----PHAF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V +N DA++ L +GDARVALN LE++ + A + +D+
Sbjct: 186 PDLTVNINTDALQLLAEFANGDARVALNTLEMAVLNA------------DHQDKK----- 228
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
VT+D A + K L YD+ GEEHYN+ISALHKSMR +D +AAIYWL RML GG
Sbjct: 229 ----VTIDTAALSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVNAAIYWLTRMLTGG 284
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARRLVRFASED+GLAD AL+ AV +QAC FLGMPECNV L + V YL+LAPK
Sbjct: 285 EDPLYIARRLVRFASEDIGLADTRALSLAVDVFQACQFLGMPECNVHLTEAVIYLSLAPK 344
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF- 537
S ++Y A A + ++++ NE VPL +RNAPT LMKE+GYG Y Y D +
Sbjct: 345 SNAVYAATEAVKADVKKT--GNEPVPLQIRNAPTGLMKELGYGADYQYAHDSQEKLTTMK 402
Query: 538 -LPPSLEGYKF 547
+PP+LEG+++
Sbjct: 403 TMPPALEGHEY 413
>gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem]
gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem]
Length = 434
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/438 (48%), Positives = 279/438 (63%), Gaps = 33/438 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++ + +GQ HL+ +LR + S+RL S+IFWGPPG+GKTTLA+ I N
Sbjct: 13 APLAERMRPRSMAEYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGSGKTTLARIIAN- 71
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A F+ SA+ SG+K++R+ V++A KRT+LFVDE+HRFNKSQQD+FLP +
Sbjct: 72 -ATRSHFIFFSAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHV 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+ IGATTENPSF +I PLLSRC+VL L PL D+ +L+ A+ D GL G
Sbjct: 131 ERGTFTIIGATTENPSFEVIAPLLSRCKVLVLQPLSDEDLLKILENALADRERGL----G 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +A+ F+ GDARVALN LE ++ A +
Sbjct: 187 ELELSATAEALAFMAEQAAGDARVALNTLETASRLA-----------------------H 223
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL+ A+EA Q K L YD+ GEEHYN+ISA KSMRG+D DAA+YWLARMLE GE P
Sbjct: 224 QGEITLESAREAVQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++I RR+V FASEDVG ADP L AVS QA +GMPE +IL Q V YLA APKS +
Sbjct: 284 IFILRRMVIFASEDVGNADPRGLQLAVSALQAFQLVGMPEGRIILGQAVTYLATAPKSNA 343
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS-AKQSFLPP 540
Y + A +R+S Q VP+ +RNAPTKLMK +GYGKGY+Y D +Q++LP
Sbjct: 344 SYNGINEALAEVRKSGAQP--VPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLPE 401
Query: 541 SLEGYKFLDWPKSNTTDK 558
+L G +F PK + +K
Sbjct: 402 ALAGRRFYT-PKESGYEK 418
>gi|322419817|ref|YP_004199040.1| AAA ATPase [Geobacter sp. M18]
gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18]
Length = 434
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/439 (48%), Positives = 279/439 (63%), Gaps = 34/439 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP I++ +GQ HLL LLRS + ++R+ S+IFWGPPG+GKTTLA+ I
Sbjct: 12 APLAERMRPRTISEYLGQGHLLGEGKLLRSLIETDRVTSLIFWGPPGSGKTTLARIIAG- 70
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A F+ SA+ SG+K++R+ V++A + +RT+LFVDE+HRFNKSQQD+FLP +
Sbjct: 71 -ATKSHFIFFSAIMSGIKEIREVVKEAEETLKYHGRRTILFVDEIHRFNKSQQDAFLPYV 129
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+ IGATTENPSF +I PLLSRC+VL LNPL ++ +L+ A+ D GL +S
Sbjct: 130 ERGTFTMIGATTENPSFEVIAPLLSRCKVLVLNPLSEEEIRQILQNALTDRERGLGES-- 187
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +A+ F+ GDARVALN LE +A A R
Sbjct: 188 --ELTAAPEALAFMAEQAGGDARVALNTLETAARLARDRE-------------------- 225
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL+ A+EA Q K L YD+ GEEHYN+ISA KSMRG+D DAA+YWLARM+E GE P
Sbjct: 226 ---ITLETAREASQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMIEAGEDP 282
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++I RR+V FASEDVG ADP L AVS +A +GMPE +IL Q V YLA APKS +
Sbjct: 283 IFILRRMVIFASEDVGNADPRGLQMAVSALEAFRLVGMPEGRIILGQAVTYLATAPKSNA 342
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
Y + AA +R S G VP+ +RNAPT+LMK +G GKGY+Y D D Q +LP
Sbjct: 343 SYAGINAALAEVRNSGGL--AVPMQIRNAPTRLMKGLGDGKGYLYPHDYQDGIVAQGYLP 400
Query: 540 PSLEGYKFLDWPKSNTTDK 558
L G +F PK + +K
Sbjct: 401 DQLAGRRFYT-PKESGYEK 418
>gi|333396043|ref|ZP_08477860.1| recombination factor protein RarA [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 443
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/431 (49%), Positives = 284/431 (65%), Gaps = 35/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP + + GQ HLL+P +LR + ++L S+IFWGPPG GKTTLA+ I N
Sbjct: 14 NSPLANRVRPQTLAEFSGQQHLLAPGKILREIIDHDQLSSMIFWGPPGVGKTTLARIIAN 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
FV SAVTSG+KD+R +E+A R + +RT++FVDE+HRFNK+QQD+FLP
Sbjct: 74 QT--KSHFVTFSAVTSGIKDIRKIMEEAEMNR-EIGERTIVFVDEIHRFNKAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L+ L+ D+ LL +A+ + +
Sbjct: 131 VERGSIILIGATTENPSFEINSALLSRCKVFVLHELQVSDIVALLTKALQN-----PHAF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V +N DA++ L +GDARVALN LE++ + A + +D+
Sbjct: 186 PDLTVNINADALQLLAEFANGDARVALNTLEMAVLNA------------DHQDKK----- 228
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
VT+D A + K L YD+ GEEHYN+ISALHKSMR +D +AAIYWL RML GG
Sbjct: 229 ----VTIDTAALSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVNAAIYWLTRMLTGG 284
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARRLVRFASED+GLAD AL+ AV +QAC FLGMPECNV L + V YL+LAPK
Sbjct: 285 EDPLYIARRLVRFASEDIGLADTRALSLAVDVFQACQFLGMPECNVHLTEAVIYLSLAPK 344
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF- 537
S ++Y A A + ++++ NE VPL +RNAPT LMKE+GYG Y Y D +
Sbjct: 345 SNAVYAATEAVKADVKKT--GNEPVPLQIRNAPTGLMKELGYGADYQYAHDSQEKLTTMK 402
Query: 538 -LPPSLEGYKF 547
+PP+LEG+++
Sbjct: 403 TMPPALEGHEY 413
>gi|320095686|ref|ZP_08027342.1| replication-associated recombination protein A [Actinomyces sp.
oral taxon 178 str. F0338]
gi|319977407|gb|EFW09094.1| replication-associated recombination protein A [Actinomyces sp.
oral taxon 178 str. F0338]
Length = 456
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/428 (49%), Positives = 283/428 (66%), Gaps = 32/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++++VVGQ H + P LRS + ++R PS+IFWGPPG GKTTLA+ I
Sbjct: 18 PLADRMRPASLDEVVGQSHQIGPGKALRSMIEADRTPSMIFWGPPGVGKTTLARVIARRT 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAVTSG+K++R+ + A + + +RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 78 CAS--FIDFSAVTSGIKEIREVMRQA-DAQASTGRRTIVFVDEIHRFNKAQQDAFLPFVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V LN L D+ LL+RA+ D + G
Sbjct: 135 KGSIILIGATTENPSFEVNSALLSRCKVFVLNALAEDDITALLRRALAD-----PRGFGE 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + D + + +GDARVAL+ LE++ + DE G V
Sbjct: 190 QDVRIEDDLLRAIAVFANGDARVALSTLEMAFLNG---------------DEEGG----V 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ + ++ + L YD+ GEEHYN+ISALHKSMR +D DAA+YWLARMLEGGE PL
Sbjct: 231 TRVSAETVEQCTSRRSLLYDKDGEEHYNIISALHKSMRNSDPDAAVYWLARMLEGGEDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFASEDVGLAD ALN AV+ + ACHF+GMPEC+V LA+ V YL+LAPKS S
Sbjct: 291 YVARRITRFASEDVGLADTNALNVAVNAFHACHFIGMPECSVHLAEAVIYLSLAPKSNSS 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI---YTPDDPSAKQSFLP 539
Y A G A++ + Q + VPL +RNAPT+LMK++GYG+GY Y D +A LP
Sbjct: 351 YTAYGRARRDALRT--QADPVPLAIRNAPTRLMKDLGYGQGYRLAHYEADKVAADMRCLP 408
Query: 540 PSLEGYKF 547
SL G ++
Sbjct: 409 DSLAGAEY 416
>gi|253700393|ref|YP_003021582.1| recombination factor protein RarA [Geobacter sp. M21]
gi|251775243|gb|ACT17824.1| AAA ATPase central domain protein [Geobacter sp. M21]
Length = 434
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/438 (49%), Positives = 279/438 (63%), Gaps = 33/438 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++ +GQ HL+ +LR + S+RL S+IFWGPPG+GKTTLA+ I N
Sbjct: 13 APLAERMRPRSMAQYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGSGKTTLARIIAN- 71
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A S F+ SA+ SG+K++R+ V++A KRT+LFVDE+HRFNKSQQD+FLP +
Sbjct: 72 -ATSSHFIFFSAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHV 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+ IGATTENPSF +I PLLSRC+VL L PL D+ +L+ A+ D GL G
Sbjct: 131 ERGTFTIIGATTENPSFEVIAPLLSRCKVLVLQPLSDEDLLKILEIALADRERGL----G 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +A+ F+ GDARVALN LE ++ A +
Sbjct: 187 DLELGATAEALAFMAEQAAGDARVALNTLETASRLA-----------------------H 223
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL+ A+EA Q K L YD+ GEEHYN+ISA KSMRG+D DAA+YWLARMLE GE P
Sbjct: 224 HGEITLESAREAVQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++I RR+V FASEDVG ADP L AVS QA +GMPE +IL Q V YLA APKS +
Sbjct: 284 IFILRRMVIFASEDVGNADPRGLQLAVSALQAYQLVGMPEGRIILGQAVTYLATAPKSNA 343
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS-AKQSFLPP 540
Y + A +R+S Q VP+ +RNAPTKLMK +GYGKGY+Y D +Q++LP
Sbjct: 344 SYNGINEALAEVRKSGAQP--VPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLPE 401
Query: 541 SLEGYKFLDWPKSNTTDK 558
+L G +F PK + +K
Sbjct: 402 ALAGRRFYT-PKESGYEK 418
>gi|315605005|ref|ZP_07880059.1| replication-associated recombination protein A [Actinomyces sp.
oral taxon 180 str. F0310]
gi|315313284|gb|EFU61347.1| replication-associated recombination protein A [Actinomyces sp.
oral taxon 180 str. F0310]
Length = 457
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/428 (49%), Positives = 282/428 (65%), Gaps = 32/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++++VVGQ H + P LRS + ++R PS+IFWGPPG GKTTLA+ I
Sbjct: 19 PLADRMRPTSLDEVVGQSHQIGPGKALRSMIEADRTPSMIFWGPPGVGKTTLARVIARHT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAVTSG+K++R+ ++ A + RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 79 HAS--FIDFSAVTSGIKEIREVMKQA-DAQASMGSRTIVFVDEIHRFNKAQQDAFLPFVE 135
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + LLSRC+V LN L D+ L++RA+ D + G
Sbjct: 136 KGAIILIGATTENPSFEVNNALLSRCKVFVLNGLTEEDLVGLMRRALTD-----PRGFGN 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + D + + + DGDARVAL+ LE++ + DE G +
Sbjct: 191 QDVRIEDDLLRAIATFADGDARVALSTLEMAVLNG---------------DEDGGATT-- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + ++ K L YD+ GEEHYN+ISALHKSMR +D DAA+YWLARMLEGGE PL
Sbjct: 234 --VTAETVEQCTSRKSLLYDKDGEEHYNIISALHKSMRNSDPDAAVYWLARMLEGGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFASED+GLAD ALN AV+ + ACHF+GMPEC+V LA+ V YL+LAPKS S
Sbjct: 292 YVARRITRFASEDIGLADTNALNVAVNAFHACHFIGMPECSVHLAEAVIYLSLAPKSNSS 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI---YTPDDPSAKQSFLP 539
Y A G A+K + Q + VPL +RNAPT+LMK++GYG+GY Y D +A LP
Sbjct: 352 YIAYGRARKDALRT--QADPVPLAIRNAPTRLMKDLGYGQGYRLAHYEADKVAADMRCLP 409
Query: 540 PSLEGYKF 547
SL G ++
Sbjct: 410 DSLAGAEY 417
>gi|336115078|ref|YP_004569845.1| AAA ATPase [Bacillus coagulans 2-6]
gi|335368508|gb|AEH54459.1| AAA ATPase central domain protein [Bacillus coagulans 2-6]
Length = 442
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/427 (49%), Positives = 285/427 (66%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ HL+ +LR + ++RL S+IFWGPPG GKTTLAK I N
Sbjct: 16 PLATRVRPKNLDEFVGQKHLIGKGKVLREMIENDRLSSMIFWGPPGVGKTTLAKIIANQT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+KD+R+ +++A + R + ++T+LF+DE+HRFNK+QQD+FLP +E
Sbjct: 76 --QSEFINFSAVTSGIKDIRNVMKEAEERR-QLGEKTILFLDEIHRFNKAQQDAFLPYVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSI+ IGATTENPSF + + LLSR +V L+ L ++ LLK+A+ + N G
Sbjct: 133 NGSIILIGATTENPSFEVNSALLSRTKVFVLHKLTSSEIVELLKQAIVNPN-----GYGL 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E++ + + + DGDAR ALN LE++ + +Q D
Sbjct: 188 QKIEIDDQTLLAIAAFSDGDARTALNTLEMAVLNGH-----------KQGD--------T 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ +D + K L YD+ GEEHYN+ISALHKSMR +D +AAIYWL+RMLE GE PL
Sbjct: 229 IIIRKEDLSQMINRKSLLYDKNGEEHYNIISALHKSMRNSDVNAAIYWLSRMLEAGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLVRFASED+GLAD AL AVS +QAC F+GMPECNV L Q V YL+LAPKS S
Sbjct: 289 FIARRLVRFASEDIGLADNRALEIAVSVFQACQFIGMPECNVHLTQAVIYLSLAPKSNSA 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
Y A +A+K S+ NE VPLHLRNAPTKLMK++ YGKGY Y D + +P
Sbjct: 349 YLAYMSAKKDALNSM--NEPVPLHLRNAPTKLMKDLNYGKGYKYAHDTEEKLTTMQTMPD 406
Query: 541 SLEGYKF 547
SL G+++
Sbjct: 407 SLAGHEY 413
>gi|85859697|ref|YP_461899.1| recombination factor protein RarA [Syntrophus aciditrophicus SB]
gi|85722788|gb|ABC77731.1| ATPase, AAA family [Syntrophus aciditrophicus SB]
Length = 478
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/423 (50%), Positives = 280/423 (66%), Gaps = 30/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ GQ+HLL +SLLR A+ +RL S+IFWGPPG+GKTTLA+ IV
Sbjct: 40 PLADRMRPETLDEFFGQEHLLKKHSLLRRAIEEDRLFSVIFWGPPGSGKTTLAR-IVAGE 98
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+Y F SAV SGVK++R VE+A + ++TVLFVDE+HRFNK+QQD+FLP +E
Sbjct: 99 TKAY-FAAFSAVLSGVKELRKVVEEAEARWQNNRQKTVLFVDEIHRFNKAQQDAFLPHVE 157
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF +I PLLSRCRVL L P D+ +L R + D GL G
Sbjct: 158 SGLITLIGATTENPSFEVIAPLLSRCRVLVLKPFSDEDLVRILNRVLRDRRRGL----GN 213
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+E++ DA+ +L DGDAR ALN+LE ++++ AA +G S
Sbjct: 214 LGLELDQDALAYLVHTADGDARTALNSLEAVASLLAA----------------GEGQSSR 257
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++ V ++ EA Q K L YD++G EHYNLISA HKS+RG+D DAA+YWL RML GE P
Sbjct: 258 ISRVQVE---EALQKKGLQYDKSGAEHYNLISAFHKSLRGSDPDAALYWLGRMLTAGEDP 314
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+VRFASEDVG ADP+AL+ A++ QA HF+G+PE + LAQ YLA APKS +
Sbjct: 315 LYIARRMVRFASEDVGNADPMALSIAMTAMQAFHFIGLPEGELALAQAAVYLATAPKSNA 374
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLP 539
+Y G + I + VPLH+RNAPT+LMK++GYG+ Y Y D A Q +LP
Sbjct: 375 LYAGYGRVKAAI--AATGTLPVPLHIRNAPTRLMKDLGYGRDYRYAHDYEGAWVPQEYLP 432
Query: 540 PSL 542
+L
Sbjct: 433 DAL 435
>gi|357055693|ref|ZP_09116756.1| hypothetical protein HMPREF9467_03728 [Clostridium clostridioforme
2_1_49FAA]
gi|355382079|gb|EHG29185.1| hypothetical protein HMPREF9467_03728 [Clostridium clostridioforme
2_1_49FAA]
Length = 438
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/432 (50%), Positives = 282/432 (65%), Gaps = 37/432 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP +++ VGQ+HLL LLR + +++PS+IFWGPPG GKTTLA I
Sbjct: 13 YNPLASRLRPDDLDGFVGQEHLLGKGKLLRQLIEQDKIPSMIFWGPPGVGKTTLAGIIAK 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAV---EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+ +F+ SAVTSG+K++++ + E++R++ +K T+LFVDE+HRFNK+QQD+F
Sbjct: 73 RT--NAQFINFSAVTSGIKEIKEVMAQAENSRRMGIK----TLLFVDEIHRFNKAQQDAF 126
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSI+ IGATTENPSF + + LLSRCRV L L D+ L+K A+
Sbjct: 127 LPYVEKGSIILIGATTENPSFEINSALLSRCRVFVLQALTEDDLARLIKNALKS-----P 181
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
K +G VE+ + IE + DGDAR ALN LE+ A+T V
Sbjct: 182 KGLGYLNVEITNHMIEMIAGFADGDARTALNTLEM-AVTNGV------------------ 222
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
SP VT D K+ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE
Sbjct: 223 ISPDKTTVTEDVLKQCIGKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEA 282
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLY+ARRLVRFASED+G+AD AL AVS YQACHFLGMPECNV L+ V YL++AP
Sbjct: 283 GEDPLYVARRLVRFASEDIGMADSQALTLAVSAYQACHFLGMPECNVHLSHAVIYLSMAP 342
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
KS S Y A +A+ + + E VPL +RNAPT LMK++ YG GY+Y D + A+
Sbjct: 343 KSNSAYMAYESAKADAQNMLA--EPVPLTIRNAPTGLMKDLHYGDGYVYAHDTKEKIARM 400
Query: 536 SFLPPSLEGYKF 547
LP SLEG ++
Sbjct: 401 QCLPDSLEGREY 412
>gi|310640104|ref|YP_003944862.1| ATPase AAA [Paenibacillus polymyxa SC2]
gi|386039285|ref|YP_005958239.1| replication-associated recombination protein A [Paenibacillus
polymyxa M1]
gi|309245054|gb|ADO54621.1| AAA ATPase central domain protein [Paenibacillus polymyxa SC2]
gi|343095323|emb|CCC83532.1| replication-associated recombination protein A [Paenibacillus
polymyxa M1]
Length = 442
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/427 (49%), Positives = 280/427 (65%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+ + VGQ HLL P +LR + ++++ S+IFWGPPG GKTTLAK I N
Sbjct: 16 PLANRVRPQNLEEFVGQKHLLEPGKVLREMIENDQVSSMIFWGPPGVGKTTLAKIIANQT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+KD+R +++A R + ++T+LF+DE+HRFNK+QQD+FLP +E
Sbjct: 76 --QSKFIDFSAVTSGIKDIRSVMKEAEGNR-QLGEKTLLFIDEIHRFNKAQQDAFLPYVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSR +V L+PL D+ LL++A+ + K
Sbjct: 133 KGSIILIGATTENPSFEVNSALLSRSKVFVLHPLNHADILELLQKALAN-----PKGFNN 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + + CDGDARVALN LE++ + +SDG
Sbjct: 188 QSIEIEDGVLSAIAEYCDGDARVALNTLEMAVLHG---------------KKSDGS---- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+V +D + K L YD+ GEEHYN+ISALHK+MR +D +AAIYWL+RMLE GE PL
Sbjct: 229 IVVNKNDLVQMLNRKSLLYDKNGEEHYNIISALHKAMRNSDVNAAIYWLSRMLESGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLVRFASED+GLAD AL +V+ +QAC F+GMPEC+V L Q V YL LAPKS +
Sbjct: 289 FIARRLVRFASEDIGLADNRALEISVAVFQACQFIGMPECDVHLTQAVIYLTLAPKSNAA 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A AA+K SV NE VPLHLRNAPTKLMKE+ YGKGY Y D + +P
Sbjct: 349 YLAYRAAKKDALHSV--NEPVPLHLRNAPTKLMKELNYGKGYKYAHDTQEKLTMMQTMPD 406
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 407 SLIGREY 413
>gi|11493971|gb|AAG35725.1|AF208046_1 RuvB-like RUVBL1 [Mus musculus]
Length = 445
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/442 (48%), Positives = 276/442 (62%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL R +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 6 PLLTRCVQTRCTSYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 65
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 66 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 125
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV--------- 292
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 126 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 185
Query: 293 -NNGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 186 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 239
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 240 VFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 299
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 300 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 359
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 360 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 419
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 420 MYSEP-VDQDYLPEELRGVDFF 440
>gi|365852465|ref|ZP_09392853.1| recombination factor protein RarA [Lactobacillus parafarraginis
F0439]
gi|363714918|gb|EHL98394.1| recombination factor protein RarA [Lactobacillus parafarraginis
F0439]
Length = 446
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/429 (49%), Positives = 282/429 (65%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + GQ LL +LR + S++LPSIIFWGPPG+GKTTLA+ I
Sbjct: 16 PLASRVRPRTLAEFAGQQQLLGKGKVLREIIESDQLPSIIFWGPPGSGKTTLAEIIARKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV SAVTSG++D+R+ ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 KA--KFVTFSAVTSGIRDIRNLMKDAEANRDMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + + LLSRC+V L PL+ D+E L++ A+ + G K
Sbjct: 133 KGSITLIGATTENPSFEINSALLSRCKVFVLKPLQVTDIEQLIRHALVHPD-GFPKQ--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ +AI+ + +GDARVALN LE++ V +DG V
Sbjct: 189 -KIEIGDEAIKEIAEFANGDARVALNTLEMA---------------VNNSPTADG----V 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V D+ + K YD++GEEHYNLISALHKSMR +DADAA+YWL+RM+ GGE PL
Sbjct: 229 TKVATDNLHQLMATKSFLYDKSGEEHYNLISALHKSMRNSDADAAVYWLSRMMNGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+GLAD ALN AV+ +QAC F+GMPEC+V L + V YL+LAPKS +I
Sbjct: 289 YIARRLVRFASEDIGLADTNALNVAVNVFQACQFIGMPECDVHLTEAVIYLSLAPKSNAI 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+A A + ++ SV NE VPL LRNAPT LM ++GYG GY Y + + +P
Sbjct: 349 YKAKMKAAEDVKHSV--NEPVPLQLRNAPTSLMSDLGYGAGYQYAHESKAKLTNMQTMPD 406
Query: 541 SLEGYKFLD 549
SL G+ + +
Sbjct: 407 SLIGHTYYE 415
>gi|163846016|ref|YP_001634060.1| recombination factor protein RarA [Chloroflexus aurantiacus
J-10-fl]
gi|222523744|ref|YP_002568214.1| recombination factor protein RarA [Chloroflexus sp. Y-400-fl]
gi|163667305|gb|ABY33671.1| AAA ATPase central domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222447623|gb|ACM51889.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl]
Length = 497
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/425 (49%), Positives = 280/425 (65%), Gaps = 28/425 (6%)
Query: 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
RMRP + + VGQ HL+ LLR A+ +++L S+I WGPPG+GKTTLA+ I +S
Sbjct: 28 RMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIAHSTKA-- 85
Query: 187 KFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246
F +SAV++GV D+R V++A+ +RTV+F+DE+HRFNKSQQD+ LP +EDG+I
Sbjct: 86 HFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145
Query: 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVE 306
+ IGATTENPSF + + LLSR RV L L ++ +L+ RA+ D GL G ++
Sbjct: 146 ILIGATTENPSFEVNSALLSRARVFKLEALTDEEIGVLIDRALTDRERGL----GDLKIM 201
Query: 307 VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVT 366
+ DA ++L + +GDAR ALNALE AA R + E L+T
Sbjct: 202 LARDARDYLVNMANGDARTALNALE-----AAARSKPPAIGETR-------------LIT 243
Query: 367 LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIAR 426
+DD ++A Q + + YD+ GE HY+ ISALHKS+R +D D A+YWL RML+GGE PLYIAR
Sbjct: 244 VDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLYIAR 303
Query: 427 RLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRAL 486
RLVR A ED+GLADP AL Q ++ QA HFLG PE + LAQ V YL LAPKS ++YRA
Sbjct: 304 RLVRIAVEDIGLADPQALPQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALYRAY 363
Query: 487 GAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPPSLEG 544
GA Q+ + E+ +NE VPLHLRNAPT+LMK +GYGKGY Y D P + Q LPP+L G
Sbjct: 364 GAVQRDVAET--RNEPVPLHLRNAPTQLMKRLGYGKGYEYAHDLPEGRSDQEHLPPNLAG 421
Query: 545 YKFLD 549
+ +
Sbjct: 422 RIYYE 426
>gi|392375593|ref|YP_003207426.1| polynucleotide enzyme with nucleotide triphosphate hydrolase domain
[Candidatus Methylomirabilis oxyfera]
gi|258593286|emb|CBE69625.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Candidatus Methylomirabilis oxyfera]
Length = 423
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/419 (51%), Positives = 281/419 (67%), Gaps = 29/419 (6%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP + + VGQ+HLL LLR A+ + LPS+I WGPPG+GKTTLA + +
Sbjct: 1 MRPRTLQEFVGQEHLLGEGKLLRRAMEAGELPSLILWGPPGSGKTTLAFLLAERCKAT-- 58
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
F SAVTSG+K++++ + A++ R +RT+LF+DE+HRFNK+QQD+FLP +E G+IV
Sbjct: 59 FQPFSAVTSGIKEIKEVIVRAQQER-GYGRRTLLFIDEIHRFNKAQQDAFLPHVEGGTIV 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
IGATTENPSF +I PLLSR +V+TL PL + ++L+RA+DD GL G ++E
Sbjct: 118 LIGATTENPSFEVIAPLLSRAKVVTLRPLAEDALMLILRRALDDQERGL----GRLQIEA 173
Query: 308 NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367
+ +A+ + GDARV+LN LE++A + VKE + DG A V
Sbjct: 174 DDEALRIIAGLGSGDARVSLNTLELAA---------QMVKE-----QPDGSRRLTAQV-- 217
Query: 368 DDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427
A+EA + L YD+ GEEHYNLISALHKS+RG+D DAA+YWLARML GE P+YIARR
Sbjct: 218 --AQEASGRRTLLYDKTGEEHYNLISALHKSLRGSDPDAALYWLARMLASGEDPMYIARR 275
Query: 428 LVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487
+VRFASED+G ADP AL A++ A HFLG PE ++ LAQ V YLA APKS +IYRA G
Sbjct: 276 VVRFASEDIGNADPQALQTALAAKDAYHFLGSPEGDLALAQAVVYLATAPKSNAIYRAFG 335
Query: 488 AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPPSLEG 544
AQ+ + E+ EGVPLHLRNAPT LMKE+ YG GY Y D P A Q +LP L+G
Sbjct: 336 RAQRDVEEA--PLEGVPLHLRNAPTTLMKELEYGDGYQYPHDLPGAFADQDYLPERLKG 392
>gi|347752409|ref|YP_004859974.1| ATPase AAA [Bacillus coagulans 36D1]
gi|347584927|gb|AEP01194.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
Length = 442
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 282/427 (66%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ HL+ +LR + +RL S+IFWGPPG GKTTLAK I N
Sbjct: 16 PLATRVRPKNLDEFVGQKHLIGKGKVLREMIEHDRLSSMIFWGPPGVGKTTLAKIIANQT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+KD+R+ +++A + R + ++T+LF+DE+HRFNK+QQD+FLP +E
Sbjct: 76 --QSEFINFSAVTSGIKDIRNVMKEAEERR-QLGEKTILFLDEIHRFNKAQQDAFLPYVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSI+ IGATTENPSF + + LLSR +V L+ L ++ LLK+A+ VN G
Sbjct: 133 NGSIILIGATTENPSFEVNSALLSRTKVFVLHKLTSSEIVELLKQAI--VN---PHGYGL 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ + + DGDAR ALN LE++ + +QED
Sbjct: 188 QKIEIEDQTLLAIAEFSDGDARTALNTLEMAVLNGH-----------KQED--------T 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ +D + K L YD+ GEEHYN+ISALHKSMR +D +AA+YWL+RMLE GE PL
Sbjct: 229 IIIRKEDLSQMINRKSLLYDKNGEEHYNIISALHKSMRNSDVNAAVYWLSRMLEAGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLVRFASED+GLAD AL AVS +QAC F+GMPECNV L Q V YL+LAPKS S
Sbjct: 289 FIARRLVRFASEDIGLADNRALEIAVSVFQACQFIGMPECNVHLTQAVIYLSLAPKSNSA 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
Y A +A+K S+ NE VPLHLRNAPTKLMK++ YGKGY Y D + +P
Sbjct: 349 YLAYMSAKKDALNSM--NEPVPLHLRNAPTKLMKDLNYGKGYKYAHDTEEKLTTMQTMPD 406
Query: 541 SLEGYKF 547
SL G+ +
Sbjct: 407 SLAGHAY 413
>gi|392412710|ref|YP_006449317.1| AAA ATPase [Desulfomonile tiedjei DSM 6799]
gi|390625846|gb|AFM27053.1| AAA ATPase [Desulfomonile tiedjei DSM 6799]
Length = 449
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/432 (48%), Positives = 278/432 (64%), Gaps = 34/432 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL++RMRP N++D VGQ+ ++ P +LR+A+ +RL S++FWGPPGTGKTTLA I
Sbjct: 12 PDRPLADRMRPRNLDDFVGQEGIVGPGKILRNAIRDDRLFSMLFWGPPGTGKTTLATIIA 71
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
A KFV SAVT+GVK++++ AR RT+LF+DE+HRFNKSQQD LP
Sbjct: 72 E--ATGSKFVPFSAVTAGVKEIKEIAARARDDLKYGGTRTILFLDEIHRFNKSQQDYLLP 129
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G+++ IGATTENPSF + + LLSR RV L L + +++R + D GL
Sbjct: 130 HVERGTLILIGATTENPSFEVNSALLSRLRVFILESLSDEHIRAIIRRGLTDTEQGL--- 186
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G +V++N DA F+ GDAR ALN LE +A+ E + DG
Sbjct: 187 -GNLQVKLNEDAEHFIAVISGGDARAALNLLEPAAL--------------EAQKHHDG-- 229
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++++D +E Q + L YD+ GEEHYNLISALHKS+R +D DA +YW+ RM+E GE
Sbjct: 230 ----VISIDLVRELAQKRSLLYDKTGEEHYNLISALHKSLRDSDPDAGLYWMGRMIEAGE 285
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRLVRFASEDVGLA P AL QAV+ YQAC ++G+PEC + LAQ V +LA +PKS
Sbjct: 286 DPLYVARRLVRFASEDVGLASPRALEQAVAAYQACQYIGLPECALALAQVVVFLATSPKS 345
Query: 480 ISIYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--Q 535
AL AA ++E + VPLHLRNAPT+ MK+IGYGKGY Y D P AK Q
Sbjct: 346 ----NALEAAYIAVKEEIAATGHLPVPLHLRNAPTRFMKKIGYGKGYKYAHDFPDAKVDQ 401
Query: 536 SFLPPSLEGYKF 547
+LP + +F
Sbjct: 402 EYLPEEIRETRF 413
>gi|348686216|gb|EGZ26031.1| hypothetical protein PHYSODRAFT_481030 [Phytophthora sojae]
Length = 511
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/460 (48%), Positives = 289/460 (62%), Gaps = 39/460 (8%)
Query: 98 PSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR 157
PSP ++ + R + + + PL+ERMRP +++D+VGQ+ LL P LL + + ++R
Sbjct: 71 PSPAAQKKRKRSAPEDVSGV-----PLAERMRPKDMDDLVGQEELLGPGKLLATLIQADR 125
Query: 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNK 217
+P++I WGPPG GKTTLA I S KF+ LS TS D++DAV+ AR R +
Sbjct: 126 VPNMILWGPPGCGKTTLAHVI--SKKTGCKFISLSGATSKAGDMKDAVDRARGERKMFRR 183
Query: 218 RTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
RT++FVDE+HRFNKSQQD FLP +EDG+I IGATTENPSF + LLSRCRV TL
Sbjct: 184 RTIVFVDEIHRFNKSQQDFFLPPVEDGTITLIGATTENPSFEVNNALLSRCRVYTLKKHT 243
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGT----RVEVNHDAIEFLCSNCDGDARVALNALEIS 333
P +E +L RA+ D + GGT +E + AIE+L C GDARVALN LE++
Sbjct: 244 PESIEKILHRALRD------HAAGGTGSEVSIEADDAAIEYLAKQCAGDARVALNCLEMA 297
Query: 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH-LAYDRAGEEHYNLI 392
TA P+ K V + V+ + F + L YDR + HY+ I
Sbjct: 298 LQTA----PMDSEKRVLR-------------VSATHVQHCFAHRQTLFYDRNADMHYDCI 340
Query: 393 SALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQ 452
SALHKS+RG+D +A +YWLARMLEGGE PLY+ARRL+R ASEDVGLA P L AVS YQ
Sbjct: 341 SALHKSVRGSDENATLYWLARMLEGGENPLYVARRLIRIASEDVGLAAPELLPMAVSAYQ 400
Query: 453 ACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRE-SVGQNEGVPLHLRNAP 511
A HF+GMPEC+V+LA LA APKSI +Y A A++ I+E G VP+HLRNAP
Sbjct: 401 AAHFVGMPECDVVLAHVATMLARAPKSIEVYAAYKRAKQSIKEWDGGALPDVPMHLRNAP 460
Query: 512 TKLMKEIGYGKGYIYTPDDPSAK---QSFLPPSLEGYKFL 548
TKLMKE+GYGK Y Y P + + Q++LP L G F
Sbjct: 461 TKLMKELGYGKEYKYNPHFTAEELKDQTYLPDELVGTNFF 500
>gi|438002230|ref|YP_007271973.1| ATPase, AAA family [Tepidanaerobacter acetatoxydans Re1]
gi|432179024|emb|CCP25997.1| ATPase, AAA family [Tepidanaerobacter acetatoxydans Re1]
Length = 442
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/428 (50%), Positives = 288/428 (67%), Gaps = 29/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL++RMRP +++ GQ+HLL +LR + S+ + S+I WGPPG GKTTLAK I
Sbjct: 17 GPLADRMRPQTLDEFEGQEHLLGEGKVLRKLIESDSITSMILWGPPGVGKTTLAKIIAEK 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
KF SAV SG+K++R+ ++ A + R+ +RT+LF+DE+HRFNKSQQD+FLP +
Sbjct: 77 THA--KFENFSAVLSGIKEIREVMKQAEERRL-YGQRTLLFIDEIHRFNKSQQDAFLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L + LLSR +V TLNPLKP ++ +LLKRA+ D GL G
Sbjct: 134 EKGDIILIGATTENPSFELNSALLSRSKVFTLNPLKPENIILLLKRAIKDKERGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+++ + +E L +GDARVALN LE+SA+ A +P K DG
Sbjct: 190 KMNVDISDETLEKLAVYSNGDARVALNTLELSALIA---IPAK-----------DGS--- 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T D ++AFQ K YD+ GEEHYNLISA HKS+R +D+DAA+YWLARMLE GE P
Sbjct: 233 -IYITNDILEQAFQKKTFLYDKKGEEHYNLISAFHKSIRNSDSDAAVYWLARMLESGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR++R ASED+GLA+P A+ QAV+ + A HF+GMPEC+ LAQ YLALAPKS +
Sbjct: 292 LYIARRMIRIASEDIGLAEPKAMEQAVAAFHAAHFIGMPECSTSLAQAAVYLALAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A++ +++ Q VPLH+RNAPT LM+++GYGKGY Y D + A LP
Sbjct: 352 VYIGYLKAREDAEKTIAQ--PVPLHIRNAPTNLMRDLGYGKGYKYAHDFENKVASMECLP 409
Query: 540 PSLEGYKF 547
+L G ++
Sbjct: 410 ENLIGTQY 417
>gi|418069167|ref|ZP_12706447.1| recombination factor protein RarA [Pediococcus acidilactici
MA18/5M]
gi|357537900|gb|EHJ21923.1| recombination factor protein RarA [Pediococcus acidilactici
MA18/5M]
Length = 439
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 288/429 (67%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP N+++ VGQ+HLL P +LR + +++L S+IFWGPPG GKTTLA+ I N
Sbjct: 13 NTPLANRVRPSNLDEFVGQEHLLGPGKILREIIENDQLSSMIFWGPPGVGKTTLAQIIAN 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAV S + ++ ++ A +L + ++T++FVDE+HRFNKSQQD+FLP
Sbjct: 73 KT--NSKFLTFSAVDSSISKIKKIMQQA-ELDREIGQKTLVFVDEIHRFNKSQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L PL+ D+ L++ + + S++
Sbjct: 130 VEKGSIILIGATTENPSFEVNSALLSRCKVFVLKPLEQGDLVKLIQNVISN-----SQAF 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++++ + I + + DGDAR ALN LE++ + +++ E+
Sbjct: 185 DNQKIKIEENQINAIANFADGDARKALNILEMAVLNG------------KKQGEA----- 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T DD + K + YD+ GEEHYN+ISALHKSMR +D DAAIYWL+RMLEGGE
Sbjct: 228 --ITITKDDLGQLISRKFVLYDKNGEEHYNIISALHKSMRNSDVDAAIYWLSRMLEGGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASEDVGLADP ALN ++ +QAC FLGMPEC+V L + V YL+LAPKS
Sbjct: 286 PLYIARRLVRFASEDVGLADPNALNITINVFQACQFLGMPECDVHLVEAVTYLSLAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY--IYTPDDPSAKQSFL 538
++Y+A AA K ++++ N+ VPL LRNAPTKLMK++GYG GY + D +
Sbjct: 346 AVYKARLAAAKDVKKTA--NDPVPLQLRNAPTKLMKDLGYGTGYELAHNAKDKLTTMETM 403
Query: 539 PPSLEGYKF 547
PPS+ G ++
Sbjct: 404 PPSVAGNEY 412
>gi|20808203|ref|NP_623374.1| recombination factor protein RarA [Thermoanaerobacter tengcongensis
MB4]
gi|254479310|ref|ZP_05092650.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
gi|20516797|gb|AAM24978.1| uncharacterized ATPase related to the helicase subunit of the
Holliday junction resolvase [Thermoanaerobacter
tengcongensis MB4]
gi|214034758|gb|EEB75492.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
Length = 440
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/427 (49%), Positives = 282/427 (66%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ VGQ+H+L LR + + + S+I WGPPG GKTTLA I N
Sbjct: 17 PLADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIAN-- 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KFV SAV SG+K++++ + A + +RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 75 MTNSKFVNFSAVLSGIKEIKEIMAQAER-DAMYGQRTVVFIDEIHRFNKAQQDAFLPHVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + + LLSR +V + PL D+ I+LKRA+ D GL G
Sbjct: 134 KGNIILIGATTENPSFEVNSALLSRSKVFMMKPLDVKDIMIILKRALKDEERGL----GL 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE++ + +E + +GDARVALN LE++ + A V V K V
Sbjct: 190 YNVEIDEEKLEKIALFSNGDARVALNTLEMAVMAANV-VNGKRV---------------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + + Q K L YD+AGEEHYNLISA HKS+R +D DAA+YW+ARMLE GE PL
Sbjct: 233 --VTDEILSDVMQKKALLYDKAGEEHYNLISAFHKSLRNSDWDAALYWMARMLEAGEDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++RFASEDVGLADP AL+ A++ Y+A H++GMPEC+V LAQ YLALAPKS ++
Sbjct: 291 YIARRMIRFASEDVGLADPQALSVAIAAYEASHYIGMPECSVNLAQAAVYLALAPKSNAL 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A +K E+ E VP+HLRNAPTKLMKE+GYG+GY Y D + LP
Sbjct: 351 YVAYNRVKKDAEETFA--EPVPMHLRNAPTKLMKELGYGEGYKYAHDFEEKVTDMECLPE 408
Query: 541 SLEGYKF 547
+L+G ++
Sbjct: 409 NLKGRRY 415
>gi|332799117|ref|YP_004460616.1| AAA ATPase central domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696852|gb|AEE91309.1| AAA ATPase central domain protein [Tepidanaerobacter acetatoxydans
Re1]
Length = 445
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/428 (50%), Positives = 288/428 (67%), Gaps = 29/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL++RMRP +++ GQ+HLL +LR + S+ + S+I WGPPG GKTTLAK I
Sbjct: 20 GPLADRMRPQTLDEFEGQEHLLGEGKVLRKLIESDSITSMILWGPPGVGKTTLAKIIAEK 79
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
KF SAV SG+K++R+ ++ A + R+ +RT+LF+DE+HRFNKSQQD+FLP +
Sbjct: 80 THA--KFENFSAVLSGIKEIREVMKQAEERRL-YGQRTLLFIDEIHRFNKSQQDAFLPFV 136
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L + LLSR +V TLNPLKP ++ +LLKRA+ D GL G
Sbjct: 137 EKGDIILIGATTENPSFELNSALLSRSKVFTLNPLKPENIILLLKRAIKDKERGL----G 192
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+++ + +E L +GDARVALN LE+SA+ A +P K DG
Sbjct: 193 KMNVDISDETLEKLAVYSNGDARVALNTLELSALIA---IPAK-----------DGS--- 235
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T D ++AFQ K YD+ GEEHYNLISA HKS+R +D+DAA+YWLARMLE GE P
Sbjct: 236 -IYITNDILEQAFQKKTFLYDKKGEEHYNLISAFHKSIRNSDSDAAVYWLARMLESGEDP 294
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR++R ASED+GLA+P A+ QAV+ + A HF+GMPEC+ LAQ YLALAPKS +
Sbjct: 295 LYIARRMIRIASEDIGLAEPKAMEQAVAAFHAAHFIGMPECSTSLAQAAVYLALAPKSNA 354
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A++ +++ Q VPLH+RNAPT LM+++GYGKGY Y D + A LP
Sbjct: 355 VYIGYLKAREDAEKTIAQ--PVPLHIRNAPTNLMRDLGYGKGYKYAHDFENKVASMECLP 412
Query: 540 PSLEGYKF 547
+L G ++
Sbjct: 413 ENLIGTQY 420
>gi|309791858|ref|ZP_07686343.1| AAA ATPase central domain protein [Oscillochloris trichoides DG-6]
gi|308226098|gb|EFO79841.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
Length = 486
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/449 (47%), Positives = 287/449 (63%), Gaps = 29/449 (6%)
Query: 103 KRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSII 162
KR+ T D + AL APL+ RMRP + + GQ H++ LLR A+ ++L SII
Sbjct: 4 KRVPTLFDAQRSAALQ-NQAPLATRMRPRTLEEYAGQQHVVGEGKLLRRAITGDQLFSII 62
Query: 163 FWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222
WGPPG+GKTTLA+ + +S + F +SAV +GV D+R +++A+ +RTVLF
Sbjct: 63 LWGPPGSGKTTLARIVASST--NAHFTQVSAVNAGVADLRAVIQEAQDRLGMYQQRTVLF 120
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
+DE+HRFNK QQD+ LP +EDG+I+ IGATTENPSF + + LLSR RV TL L ++
Sbjct: 121 IDEIHRFNKGQQDAVLPYVEDGTIILIGATTENPSFEVNSALLSRARVFTLQALSDAEIG 180
Query: 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVP 342
L+ RA+ D GL+ + + DA +L + +GDAR ALNALE + + A +
Sbjct: 181 QLVDRALADAERGLAT----YQPMLATDARGYLINMANGDARTALNALEAAVLAKAPSLG 236
Query: 343 VKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGN 402
K L+TLDD ++A Q + YD+ GE HY+ ISALHKS+R +
Sbjct: 237 DKR------------------LITLDDIRDALQSRATRYDKHGELHYDAISALHKSVRDS 278
Query: 403 DADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462
D D A+YWLARML+GGE PLYIARR++R A ED+GLADP AL Q ++ QA HFLG PE
Sbjct: 279 DPDGALYWLARMLDGGEDPLYIARRIMRMAVEDIGLADPHALPQTIAAQQAIHFLGQPEG 338
Query: 463 NVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGK 522
+ LAQ V YL APKS ++YRA A QK + E+ +NE VPLHLRNAPT LM+ +GYGK
Sbjct: 339 ELALAQAVVYLCQAPKSNALYRAYAAVQKDVAET--RNEPVPLHLRNAPTGLMRNLGYGK 396
Query: 523 GYIYTPDDPSAK--QSFLPPSLEGYKFLD 549
GY Y D P+ + Q+ LPP+LEG + +
Sbjct: 397 GYEYAHDLPTGRSEQAHLPPNLEGRIYYE 425
>gi|227509636|ref|ZP_03939685.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190998|gb|EEI71065.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 441
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/429 (49%), Positives = 281/429 (65%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D GQ HLL +LR + S++LPS+IFWGPPG+GKTTLA+ I
Sbjct: 16 PLAYRVRPQTLADFAGQQHLLGKGKVLREIIESDQLPSMIFWGPPGSGKTTLAEIIAKKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV SAVTSG++D+R ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 KA--KFVTFSAVTSGIRDIRKLMKDAEANRDMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + LLSRC+V L PL+ D+ L+K A+ +G +K
Sbjct: 133 KGSITLIGATTENPSFEINAALLSRCKVFVLQPLQVTDIIQLIKHALVH-PDGFAKQ--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE++ +AI + +GDAR+ALN LE++ + E D
Sbjct: 189 -HVEIDGEAIRQIAEFANGDARIALNTLEMAVNNS--------------EKSGDRIR--- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ D+ + K YD++GEEHYNLISALHKSMR +DADAA+YWL+RM+ GGE PL
Sbjct: 231 --VSTDNLHQLMATKSFLYDKSGEEHYNLISALHKSMRNSDADAAVYWLSRMMNGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+GLAD ALN AV+ +QAC F+GMPEC+V L + V YL+LAPKS ++
Sbjct: 289 YIARRLVRFASEDIGLADTNALNVAVNVFQACQFIGMPECDVHLTEAVIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
Y+A A + ++ SV NE VPL LRNAPT LM ++GYGKGY Y + + + +P
Sbjct: 349 YKAKLKAAEDVKHSV--NEPVPLQLRNAPTSLMSDLGYGKGYQYAHESKAKLTTMQTMPD 406
Query: 541 SLEGYKFLD 549
SL G+ + +
Sbjct: 407 SLVGHIYYE 415
>gi|366052876|ref|ZP_09450598.1| recombination factor protein RarA [Lactobacillus suebicus KCTC
3549]
Length = 442
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/429 (48%), Positives = 278/429 (64%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP +I++ VGQ HLL +LR + S++L S+IFWGPPG GKTTLA+ I N
Sbjct: 14 NSPLANRVRPQSIDEFVGQGHLLEHGKILREIIDSDQLSSMIFWGPPGVGKTTLAQIIAN 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
FV SAVTS +KD+R +E+A R + ++T++FVDE+HRFNK+QQD+FLP
Sbjct: 74 QTKAH--FVNFSAVTSSIKDIRKIMEEAEANR-EIGEKTIVFVDEIHRFNKAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L L D+ L+K A+ N
Sbjct: 131 VERGSIILIGATTENPSFEINSALLSRCKVFVLKQLTTDDLIQLIKNAIKHPN-----GF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++V+ DAI + +GDARVALN LE++ +
Sbjct: 186 PNLEIKVDDDAIRLIAQFANGDARVALNTLEMAVLNG-------------------NSHD 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ + D+ + K L YD+ GEEHYNLISALHKSMR +D DAAIYWL+RML+GGE
Sbjct: 227 HQVDINRDNLNQLVNTKSLRYDKKGEEHYNLISALHKSMRNSDVDAAIYWLSRMLDGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P+YIARRLVRFASED+GLAD AL+ + +QAC +GMPEC+V L + V YL+LAPKS
Sbjct: 287 PIYIARRLVRFASEDIGLADTRALSLTIDVFQACQLIGMPECDVHLTEAVIYLSLAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S YRA A+ ++++ NE VPL +RNAPTKLMKE+ YGKGY Y + +D +
Sbjct: 347 SAYRARLDAKSDVKKT--GNEPVPLEIRNAPTKLMKELNYGKGYQYAHSTEDKVTSMKTM 404
Query: 539 PPSLEGYKF 547
PP LEG+++
Sbjct: 405 PPELEGHEY 413
>gi|308270409|emb|CBX27021.1| Replication-associated recombination protein A [uncultured
Desulfobacterium sp.]
Length = 456
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/430 (49%), Positives = 283/430 (65%), Gaps = 30/430 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E+MRP N+N+ GQ+H+++ +L+R A +++ S+I WGPPG GKTTLA+ I
Sbjct: 22 PLAEKMRPRNLNEFAGQEHVVAEGTLIRHAFEKDQVFSMILWGPPGCGKTTLARIIARET 81
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ SY F+ SAV SGVK++R +E+A+ KR++LFVDE+HRFNK+QQD+FL +E
Sbjct: 82 S-SY-FMHFSAVLSGVKEIRAVIEEAKNQLKLFRKRSILFVDEIHRFNKAQQDAFLHHVE 139
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF +I+PLLSRCRV+TL L D+ ++ A+ D GL G
Sbjct: 140 SGLITLIGATTENPSFEVISPLLSRCRVITLKTLSDDDISRIIDSALKDKERGL----GE 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + + L DGDAR+ALN+LEI+A A + ++ +++
Sbjct: 196 LNLSLSEEVLSHLVRISDGDARMALNSLEIAAGIATGKNKTQDNEQI------------- 242
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL+D + A Q K L YD+ GEEHYNLISALHKSMRG+D DAA+YWLARML GE PL
Sbjct: 243 -YITLNDIENALQKKALLYDKKGEEHYNLISALHKSMRGSDPDAAVYWLARMLTAGEDPL 301
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++RFASED+G ADP AL+ VS +A F+G PE + LAQ V YL+ APKS S+
Sbjct: 302 FIARRMIRFASEDIGNADPYALSVTVSAMEAFKFIGQPEGELALAQAVIYLSTAPKSNSV 361
Query: 483 YRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
Y A G QK +R +EG VPLH+RNAPT LMK++GYGK Y Y D + Q +
Sbjct: 362 YTAYGRVQKAVR-----SEGALPVPLHIRNAPTSLMKDLGYGKDYKYAHDYKEDYVFQEY 416
Query: 538 LPPSLEGYKF 547
LP LE F
Sbjct: 417 LPDKLESTLF 426
>gi|304384951|ref|ZP_07367297.1| replication-associated recombination protein A [Pediococcus
acidilactici DSM 20284]
gi|304329145|gb|EFL96365.1| replication-associated recombination protein A [Pediococcus
acidilactici DSM 20284]
Length = 439
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 287/429 (66%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP N+++ VGQ+HLL P +LR + +++L S+IFWGPPG GKTTLA+ I N
Sbjct: 13 NTPLANRVRPSNLDEFVGQEHLLGPGKILREIIENDQLSSMIFWGPPGVGKTTLAQIIAN 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAV S + ++ ++ A +L + ++T++FVDE+HRFNKSQQD+FLP
Sbjct: 73 KT--NSKFLTFSAVDSSISKIKKIMQQA-ELDREIGQKTLVFVDEIHRFNKSQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L PL+ D+ L++ + + S++
Sbjct: 130 VEKGSIILIGATTENPSFEVNSALLSRCKVFVLKPLEQGDLVKLIQNVISN-----SQAF 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++++ + I + + DGDAR ALN LE++ + +++ E+
Sbjct: 185 DNQKIKIEENQINAIANFADGDARKALNILEMAVLNG------------KKQGEA----- 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T DD + K + YD+ GEEHYN+ISALHKSMR +D DAAIYWL+RMLEGGE
Sbjct: 228 --ITITKDDLGQLISRKFVLYDKNGEEHYNIISALHKSMRNSDVDAAIYWLSRMLEGGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASEDVGLADP ALN + +QAC FLGMPEC+V L + V YL+LAPKS
Sbjct: 286 PLYIARRLVRFASEDVGLADPNALNITIIVFQACQFLGMPECDVHLVEAVTYLSLAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY--IYTPDDPSAKQSFL 538
++Y+A AA K ++++ N+ VPL LRNAPTKLMK++GYG GY + D +
Sbjct: 346 AVYKARLAAAKDVKKTA--NDPVPLQLRNAPTKLMKDLGYGTGYELAHNAKDKLTTMETM 403
Query: 539 PPSLEGYKF 547
PPS+ G ++
Sbjct: 404 PPSVAGNEY 412
>gi|404495800|ref|YP_006719906.1| recombination factor protein RarA [Geobacter metallireducens GS-15]
gi|418067813|ref|ZP_12705145.1| AAA ATPase central domain protein [Geobacter metallireducens RCH3]
gi|78193414|gb|ABB31181.1| stalled replication fork rescue ATPase [Geobacter metallireducens
GS-15]
gi|373558140|gb|EHP84498.1| AAA ATPase central domain protein [Geobacter metallireducens RCH3]
Length = 441
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/439 (49%), Positives = 274/439 (62%), Gaps = 34/439 (7%)
Query: 112 DSTTALHVPH-APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTG 170
D+T A APL+ERMRP ++D VGQ+HLL LLR + S+ L S+IFWGPPG+G
Sbjct: 6 DATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIESDTLSSLIFWGPPGSG 65
Query: 171 KTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
KTTLA+ I N A F+ SA+ SGVK++R+ V++A R T+LFVDE+HRFN
Sbjct: 66 KTTLARIIAN--ATKSHFIFFSAILSGVKEIREIVKEAENERKYRGSNTILFVDEIHRFN 123
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
KSQQD+FLP +E G IGATTENPSF +I PLLSRC+VL LN L +V +L+RA+
Sbjct: 124 KSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSRCKVLVLNSLTDEEVTTILRRALV 183
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
D GL G + V+ +A+ F+ GDAR+ALN LE +A A
Sbjct: 184 DPERGL----GNRSLAVSDEALAFMAEQAQGDARIALNTLETAARLA------------- 226
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYW 410
+ E D LD A+EA Q K L YD+ GEEHYN+ISA KSMRG+D D A+YW
Sbjct: 227 KNGEID----------LDSAREAAQKKALLYDKGGEEHYNVISAFIKSMRGSDPDGALYW 276
Query: 411 LARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCV 470
LARM+E GE PL+I RR+V ASED+G ADP AL AV+ QA +GMPE +I+AQ V
Sbjct: 277 LARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQAFQLVGMPEGRIIMAQAV 336
Query: 471 AYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD 530
YLA APKS + Y + AA +R+S VPLH+RNAPT+LMK++GY GY Y D
Sbjct: 337 TYLATAPKSNASYAGIDAALAEVRKSGALP--VPLHIRNAPTRLMKDLGYHAGYKYAHDY 394
Query: 531 PSA--KQSFLPPSLEGYKF 547
Q +LP L G F
Sbjct: 395 EGGHVSQEYLPEQLRGKTF 413
>gi|15893618|ref|NP_346967.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC
824]
gi|337735540|ref|YP_004634987.1| recombination factor protein RarA [Clostridium acetobutylicum DSM
1731]
gi|384457051|ref|YP_005669471.1| recombination factor protein RarA [Clostridium acetobutylicum EA
2018]
gi|15023171|gb|AAK78307.1|AE007547_4 ATPase related to the helicase subunit of Holliday junction
resolvase [Clostridium acetobutylicum ATCC 824]
gi|325507740|gb|ADZ19376.1| recombination factor protein RarA [Clostridium acetobutylicum EA
2018]
gi|336292526|gb|AEI33660.1| recombination factor protein RarA [Clostridium acetobutylicum DSM
1731]
Length = 443
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/432 (47%), Positives = 281/432 (65%), Gaps = 31/432 (7%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
++ + PL+ RMRP N++D +GQ+H+L LR+ + + + S+I WGPPG GKTTLA
Sbjct: 11 NIENIPLAGRMRPRNLSDYIGQEHILEKGKALRNMLEKDSITSMILWGPPGVGKTTLAMI 70
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I ++ + FV SA TSG+K+++D + A K R+ RT+LF+DE+HRFNKSQQD+F
Sbjct: 71 IASTTKCN--FVEFSAATSGIKEIKDIMIKAEKDRL-FGIRTLLFIDEIHRFNKSQQDTF 127
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E G I+ IGATTENPSF + + LLSRCRV L PL +D+ LLK A+ D +
Sbjct: 128 LPHVEKGDIILIGATTENPSFEVNSALLSRCRVFVLKPLSNNDIVKLLKNALTD-----T 182
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
+ ++++ D + + +GDAR ALN LE++ +++ + V + + ED
Sbjct: 183 RGFKNKNIQISEDLLTLIAVYSNGDARTALNVLEMAVLSSKLEHGVVTINKGILED---- 238
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
Q K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLEG
Sbjct: 239 ---------------CMQNKALIYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEG 283
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLYIARRL+RF+SED+G+AD ALN V+ Y +CH++GMPEC+V L + V YL+LAP
Sbjct: 284 GEDPLYIARRLIRFSSEDIGVADTNALNVTVNVYNSCHYIGMPECSVNLTEAVVYLSLAP 343
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQ 535
KS SIY A A+K +E++ GVPLHLRNAPTKLM ++GY KGY Y D+
Sbjct: 344 KSNSIYMAYEKAKKDAKETLAS--GVPLHLRNAPTKLMSDLGYSKGYKYAHDFDNKVVDM 401
Query: 536 SFLPPSLEGYKF 547
LP +L+ K+
Sbjct: 402 QCLPDNLKDEKY 413
>gi|449666207|ref|XP_002160777.2| PREDICTED: ATPase WRNIP1-like [Hydra magnipapillata]
Length = 547
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/428 (49%), Positives = 281/428 (65%), Gaps = 27/428 (6%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-- 185
MRP N ++ GQ+ + N LL+ SN++PS+I WGPPG GKT+ A I S
Sbjct: 1 MRPNNFDNFYGQNSFGAKN-LLKELFVSNKIPSLILWGPPGCGKTSFAHIISRRCKESDS 59
Query: 186 -YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG 244
Y+FV LSA +G+ DV+D ++ A+ + ++++TVLF+DE+HRFNK QQD+FLP +EDG
Sbjct: 60 KYRFVTLSATMAGINDVKDEIKVAKNEKKLTSRKTVLFIDEIHRFNKMQQDTFLPYVEDG 119
Query: 245 SIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTR 304
+IV IGATTENPSF++ L+SRC V+ N L+ + +L+ A++ +N + V R
Sbjct: 120 TIVLIGATTENPSFYINNALISRCHVVVFNSLETEVILKILQNAIELLNET-DQEVAKCR 178
Query: 305 VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364
E A+ + +GDAR ALN L++ + KE V Q + C
Sbjct: 179 FE--EGALNLVAQYANGDARCALNKLDM------ILQAKKESIHVSQANSQISC------ 224
Query: 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYI 424
+ +E Q + YD+AG+EHYNLISALHKS+RG+D DA+IYWLARMLEGGE+PLYI
Sbjct: 225 ---ELIREELQRCCVNYDKAGDEHYNLISALHKSIRGSDVDASIYWLARMLEGGEKPLYI 281
Query: 425 ARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYR 484
ARRL+R ASED+GLAD AL QAVS YQACHF+GMPEC++ILAQ V YLA APKSI++Y
Sbjct: 282 ARRLIRIASEDIGLADSNALPQAVSAYQACHFIGMPECDIILAQVVVYLANAPKSIAVYE 341
Query: 485 ALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP---DDPSAKQSFLPPS 541
A A+ I+ G VPLHLRNAPTKLM+ +GYGK Y YTP +DP Q +LP S
Sbjct: 342 AYKNAKDFIKNCSGSQPEVPLHLRNAPTKLMENLGYGKDYKYTPLFKEDPM--QEYLPKS 399
Query: 542 LEGYKFLD 549
+ G KF +
Sbjct: 400 MLGKKFFN 407
>gi|427412831|ref|ZP_18903023.1| hypothetical protein HMPREF9282_00430 [Veillonella ratti
ACS-216-V-Col6b]
gi|425715647|gb|EKU78633.1| hypothetical protein HMPREF9282_00430 [Veillonella ratti
ACS-216-V-Col6b]
Length = 433
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/427 (48%), Positives = 279/427 (65%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + VGQ LL N +LR + ++++ S+I WGPPG GKTTLA+ I +
Sbjct: 14 PLAARLRPETLEEYVGQTQLLGENRVLRRLIENDQVSSMILWGPPGVGKTTLARIIAHHT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAVTS +KD+R ++ A K R + +T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 74 QAT--FIDFSAVTSSIKDIRSVMQKAEKNR-QYGIKTIVFVDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSI+ IGATTENPSF + LLSRC+V L LK ++ LL+RAV D + GG
Sbjct: 131 NGSIILIGATTENPSFEVNGALLSRCKVFVLKILKTDELMTLLQRAVRD-----ERGFGG 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E++ D + + +GDAR+AL+ LE+ + V DG
Sbjct: 186 RDIEISEDMLWIIAEFANGDARMALSTLEMVILNGQVL--------------DDGAIK-- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + ++ K L YD++GEEHYN+ISALHKSMR +D DAA+YWLARMLE GE+PL
Sbjct: 230 --VTRETIEQCTAKKSLLYDKSGEEHYNIISALHKSMRNSDPDAAVYWLARMLEAGEEPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+RFASED+G+ADP AL +V+ YQACHF+GMPECNV L Q V YL+LAPKS +I
Sbjct: 288 YVARRLIRFASEDIGMADPHALGISVAAYQACHFIGMPECNVHLTQAVVYLSLAPKSNAI 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y+A A+ E + E VP+H RNAPTKLMK++GYGKGY Y D LP
Sbjct: 348 YKAYETAKNDAIELLA--EPVPMHFRNAPTKLMKDVGYGKGYQYAHHTLDKITNMKCLPD 405
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 406 SLVGKEY 412
>gi|386812744|ref|ZP_10099969.1| ATPase [planctomycete KSU-1]
gi|386405014|dbj|GAB62850.1| ATPase [planctomycete KSU-1]
Length = 448
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 285/454 (62%), Gaps = 28/454 (6%)
Query: 106 KTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWG 165
KT D+ S +PLS+RMRP N+ + VGQ+HL+ PN +L+ V + L S+IFWG
Sbjct: 5 KTERDLFSVRTDTTKKSPLSDRMRPRNLKEFVGQEHLVGPNKILQRLVENKELISLIFWG 64
Query: 166 PPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225
PPG GKTTLA + + A+ F+ SAV SGVKD+R+ +E+A+ K+TVL VDE
Sbjct: 65 PPGVGKTTLA--FIVAQAMDAHFISFSAVLSGVKDIREVIEEAKNQAHYYRKKTVLLVDE 122
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+HRFNK+QQD+FL +EDG+I IGATTENPSF + PLLSRC+VL L L + ++
Sbjct: 123 IHRFNKAQQDAFLHHVEDGTITLIGATTENPSFEVNAPLLSRCKVLVLEQLNEDHLRSIM 182
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKE 345
K A+ D GL G R+E+ DA + + GDARVALN LE S + A P +E
Sbjct: 183 KNALCDKERGL----GNLRIEIQPDAFDLIAHLSQGDARVALNTLEASVMLAR---PDQE 235
Query: 346 VKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD 405
K + VT + A+E+ Q K L YD+ GEEHYN+ISA KSMRG+D D
Sbjct: 236 EKRI---------------VTREIAQESMQQKSLLYDKGGEEHYNIISAFIKSMRGSDPD 280
Query: 406 AAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVI 465
AA+YWLARMLE GE PL+I RR++ FASED+G ADP AL AVS A HF+G+PE +
Sbjct: 281 AALYWLARMLESGEDPLFIVRRMIIFASEDIGNADPHALQLAVSTKDAFHFIGLPEGWIP 340
Query: 466 LAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI 525
LAQCV YLA APKS + Y A A K +RE + VP H+RNAPT LM ++GYGKGY
Sbjct: 341 LAQCVTYLACAPKSNASYMAYLEALKDVREKGALS--VPFHIRNAPTPLMNDLGYGKGYK 398
Query: 526 YTPD-DPSAKQSFLPPSLEGYKFLDWPKSNTTDK 558
Y +QS++P L G ++ P N DK
Sbjct: 399 YPHSCGGYVEQSYMPEELRGREYYK-PTDNGYDK 431
>gi|402836723|ref|ZP_10885255.1| replication-associated recombination protein A [Mogibacterium sp.
CM50]
gi|402270347|gb|EJU19611.1| replication-associated recombination protein A [Mogibacterium sp.
CM50]
Length = 441
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/427 (48%), Positives = 277/427 (64%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++ GQ HL+ +L + S+++PS+IFWGPPG GKTTLA+ I
Sbjct: 16 PLAARMRPKNLSEFAGQQHLIGEGKILSRLIESDKVPSMIFWGPPGVGKTTLAQIIAGKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAVTSG+K++R+ ++ A + + ++T++F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 KAN--FITFSAVTSGIKEIRNVMQQADRY-ARFGEKTIVFIDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + LLSRC+V L L+ D+E LLKRA+ D + G
Sbjct: 133 KGSITLIGATTENPSFEVNGALLSRCKVFVLKALETDDIEQLLKRAIAD-----PRGYGS 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV + D + + +GDAR +L LE+ + V + DG
Sbjct: 188 ERVNITDDMLHMIAEFANGDARSSLTTLEMVVLNGDV--------------QPDGTID-- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T++ ++ K L YD+ GEEHYN+ISALHKSMR +DADAA+YWLARMLE GE PL
Sbjct: 232 --ITMETLEQCISRKSLLYDKDGEEHYNIISALHKSMRNSDADAAVYWLARMLEAGEDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFASEDVGLADP AL A++ YQACHF+GMPEC+V L Q V Y+ALAPKS ++
Sbjct: 290 YVARRVTRFASEDVGLADPRALEIAIAAYQACHFIGMPECSVHLTQAVIYMALAPKSNAM 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
A AA+ +E + E VP+++RNAPT LMK +GYGKGY Y D D LP
Sbjct: 350 EVAYFAARDDAQEHMA--EPVPMNIRNAPTSLMKGLGYGKGYKYAHDYEDKITAMQCLPD 407
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 408 SLTGREY 414
>gi|291245127|ref|XP_002742444.1| PREDICTED: Werner helicase interacting protein-like [Saccoglossus
kowalevskii]
Length = 633
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/444 (46%), Positives = 285/444 (64%), Gaps = 31/444 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+E+MRP +++D VGQD ++ N++LRS + +N +PS+I WGPPG GKTTLA+ + ++
Sbjct: 203 APLAEKMRPSSLDDYVGQDKVIGTNTMLRSLIEANDVPSMILWGPPGCGKTTLARIVASN 262
Query: 182 VAVS----YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+ +FV LSA TS V +VR+ ++ A+ + ++T+LF+DE+HRFNK QQD+F
Sbjct: 263 AKKNSNSRLRFVQLSATTSNVSEVREVIKIAQNEQTMFKRKTILFIDEIHRFNKLQQDTF 322
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL- 296
L IE+G+I IGATT+NPSF + + LLSRC+V+ L L +E +L +A+ ++ +
Sbjct: 323 LMHIENGTITLIGATTQNPSFQVNSALLSRCKVVVLEKLSIQSMENILTKAIKSLHGCIL 382
Query: 297 -SKSVGGTRVEVNH-----------DAIEFLCSNCDGDARVALNALEISAITAAVRVPVK 344
K T +E H +A+ LC+ CDGD R ALN LEI+ +
Sbjct: 383 EEKEEPATAIEKYHHAERPELFVERNALSMLCNLCDGDGRAALNCLEIAVHSQVASHRSG 442
Query: 345 EVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDA 404
+ ++ S YV +V LD KE Q H+ YD+ GEEHYN ISA+ KS+RG+DA
Sbjct: 443 GLDKMN--------SDYV-VVKLDHIKEGLQRSHILYDKTGEEHYNCISAMQKSIRGSDA 493
Query: 405 DAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464
+A++YW+ RML GGE PLYIARRLVR ASED+GLADP A+ AVS YQAC LGMPEC+V
Sbjct: 494 NASLYWVTRMLLGGEDPLYIARRLVRTASEDIGLADPHAVGIAVSAYQACQSLGMPECDV 553
Query: 465 ILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
+LAQC YLA APKS +Y AL A+ I+E G VPLHLRNAP M+ +GYGKGY
Sbjct: 554 VLAQCAIYLARAPKSTEVYSALTLAKSSIQEHNGPLPCVPLHLRNAPNITMRNLGYGKGY 613
Query: 525 IYTPDDPSAKQSFLPPSLEGYKFL 548
+P F+P ++G F
Sbjct: 614 -----NPRRAMVFMPQGMQGVNFF 632
>gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA]
gi|409912589|ref|YP_006891054.1| stalled replication fork rescue ATPase [Geobacter sulfurreducens
KN400]
gi|39984055|gb|AAR35443.1| stalled replication fork rescue ATPase [Geobacter sulfurreducens
PCA]
gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens
KN400]
Length = 440
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/429 (48%), Positives = 276/429 (64%), Gaps = 33/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ERMRP +++ VGQ+HLL LLR + S+ L S+IFWGPPG+GKTTLA+ I N
Sbjct: 15 NAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A F+ SA+ SG+K++R+ V++A + + + T+LFVDE+HRFNKSQQD+FLP
Sbjct: 75 --ATKSHFIFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G+ IGATTENPSF ++ PLLSRC+VL LNPL +VE +L+ A+ D GL
Sbjct: 133 VERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSALADPERGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + + + DA+ F+ GD RVALN LE +A + VK
Sbjct: 189 GASGLAADDDALAFMAEQSGGDGRVALNTLETAA---------RLVKN------------ 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ L+ +EA Q K L YD+ GEEHYN+ISA KSMRG+D D A+YWLARM+E GE
Sbjct: 228 --GRIDLESVREAIQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+I RR+V ASED+G ADP AL AV+ Q +GMPE +I+AQ YLA APKS
Sbjct: 286 PLFILRRMVILASEDIGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATYLATAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFL 538
+ Y + AA +R+S VPLH+RNAPT+LMK++GY KGY Y D + Q++L
Sbjct: 346 ASYAGIDAALAEVRKSGALP--VPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQNYL 403
Query: 539 PPSLEGYKF 547
P LEG +F
Sbjct: 404 PERLEGKRF 412
>gi|407001763|gb|EKE18681.1| hypothetical protein ACD_9C00262G0003 [uncultured bacterium]
Length = 402
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/431 (47%), Positives = 284/431 (65%), Gaps = 34/431 (7%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
H+ +APL++RMRP + + GQ L+ S LR A+ +++PS+I WGPPG+GKTTLA
Sbjct: 6 HLQNAPLADRMRPQTLEEFFGQQELVGEKSFLRKAIQEDQVPSMILWGPPGSGKTTLASV 65
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I N + F+ LSAVTSG+K++R + A++ + K+T+LF+DE+HR+NK+QQD+
Sbjct: 66 IAN--VTNADFIKLSAVTSGIKELRKIITKAQENEWQ-KKKTILFIDEIHRWNKAQQDAL 122
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E G + IGATTENPSF + + L+SR RV LN L+ D+ +++ A+ D GL
Sbjct: 123 LPHVEQGLMTLIGATTENPSFEVNSALVSRSRVFVLNKLEADDLVKIIETALKDKERGL- 181
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
G +E+ + I+ + +GDAR+ALN LE +A +
Sbjct: 182 ---GLKEIEIAPEMIKEIALLANGDARMALNTLEAAANQSKT------------------ 220
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
+T + K+ Q HL YD+ GEEHYN+ISALHKSMRG DADA++YWLARMLEG
Sbjct: 221 -------ITRELLKQIIQKSHLYYDKGGEEHYNIISALHKSMRGGDADASVYWLARMLEG 273
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P Y+ARRL+RFASED+GLAD A+ A + ++ACH LGMPEC+V L+Q V Y+A AP
Sbjct: 274 GEDPKYVARRLLRFASEDIGLADSFAVVLANNVFEACHKLGMPECSVHLSQLVIYMAKAP 333
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF 537
KS+S Y A A+K ++E N VP+H+RNAPTKLM+++GYGKGY YTP + S+ Q +
Sbjct: 334 KSVSAYFAYNKAKKDVQEY--GNLPVPMHIRNAPTKLMEKLGYGKGYKYTPIEDSSGQEY 391
Query: 538 LPPSLEGYKFL 548
LP L+ K+L
Sbjct: 392 LPGELKKRKYL 402
>gi|227522807|ref|ZP_03952856.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
gi|227090008|gb|EEI25320.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
Length = 441
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/429 (49%), Positives = 281/429 (65%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D GQ LL +LR + S++LPS+IFWGPPG+GKTTLA+ I
Sbjct: 16 PLAYRVRPQTLADFAGQQQLLGKGKVLREIIESDQLPSMIFWGPPGSGKTTLAEIIAKKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV SAVTSG++D+R ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 KA--KFVTFSAVTSGIRDIRKLMKDAEANRNMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + LLSRC+V L PL+ +D+ L+K A+ + G +K
Sbjct: 133 KGSITLIGATTENPSFEINAALLSRCKVFVLQPLQVNDIIQLIKHALVHPD-GFAKQ--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE++ +AI + +GDAR+ALN LE++ + E D
Sbjct: 189 -HVEIDGEAIRQIAEFANGDARIALNTLEMAVNNS--------------EKSGDRIR--- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ D+ + K YD++GEEHYNLISALHKSMR +DADAA+YWL+RM+ GGE PL
Sbjct: 231 --VSTDNLHQLMATKSFLYDKSGEEHYNLISALHKSMRNSDADAAVYWLSRMMNGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+GLAD ALN AV+ +QAC F+GMPEC+V L + V YL+LAPKS ++
Sbjct: 289 YIARRLVRFASEDIGLADTNALNVAVNVFQACQFIGMPECDVHLTEAVIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
Y+A A + ++ SV NE VPL LRNAPT LM ++GYGKGY Y + + + +P
Sbjct: 349 YKAKLKAAEDVKHSV--NEPVPLQLRNAPTSLMSDLGYGKGYQYAHESKAKLTTMQTMPD 406
Query: 541 SLEGYKFLD 549
SL G+ + +
Sbjct: 407 SLVGHIYYE 415
>gi|331702365|ref|YP_004399324.1| AAA ATPase [Lactobacillus buchneri NRRL B-30929]
gi|329129708|gb|AEB74261.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 441
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/429 (48%), Positives = 276/429 (64%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ VGQ L+ +LR + S++LPSIIFWGPPG GKTTLA+ I
Sbjct: 16 PLASRVRPKTLDQFVGQHQLVGKGKVLREIIESDQLPSIIFWGPPGVGKTTLAEIIAKKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV SAVTSG+K++R+ ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 QA--KFVTFSAVTSGIKEIREIMKDAEANREMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + + LLSRC+V L PL+ D+ L+ + + + +
Sbjct: 133 RGSITLIGATTENPSFEINSALLSRCKVFVLQPLETDDIVQLIHQTLKN-----PAAFPK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E++ A++ + +GDARVALN LE++ V + DG
Sbjct: 188 ETIEIDDQAVKEVAEFANGDARVALNTLEMA---------------VNNSPKQDGK---- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ D+ + K YD+ GEEHYN+ISALHKSMR +D DAA+YWL RML GGE PL
Sbjct: 229 VTVSTDNLHQLMNTKSFLYDKHGEEHYNIISALHKSMRNSDPDAAVYWLTRMLSGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VRFASED+GLAD ALN A++ +QAC FLGMPECNV L +C YL+LAPKS ++
Sbjct: 289 YIARRMVRFASEDIGLADTNALNVAINVFQACQFLGMPECNVHLTECAIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y+A A+ ++ S+ NE VPL LRNAPT LM ++GYGKGY Y + D +P
Sbjct: 349 YKATLGAETDVKHSI--NEPVPLQLRNAPTSLMSKLGYGKGYQYAHEAKDKLTNMQTMPD 406
Query: 541 SLEGYKFLD 549
SL G+ + +
Sbjct: 407 SLVGHTYYE 415
>gi|365906084|ref|ZP_09443843.1| recombination factor protein RarA [Lactobacillus versmoldensis KCTC
3814]
Length = 442
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/429 (47%), Positives = 285/429 (66%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP + ++ GQ+HL+ +LR + ++L S+IFWGPPG GKTTLA+ I +
Sbjct: 14 NSPLANRVRPTDFDEFTGQEHLIGKGKILRDLIDQDKLSSMIFWGPPGVGKTTLAEIIAH 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+F+ SAVTSG+K++R +++A + R + +RTV+F+DE+HRFNK+QQD+FLP
Sbjct: 74 KT--KSQFITFSAVTSGIKEIRQIMQEAEENR-EIGQRTVVFIDEIHRFNKAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L+ L D+ LL A+ + ++
Sbjct: 131 VERGSIILIGATTENPSFEINSALLSRCKVFVLHQLTVSDILELLHNALKN-----PEAF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+VE++ ++ + +GDAR ALN LE++ + ++ EV+E
Sbjct: 186 PDYQVEISESDLKMIAEFANGDARTALNTLEMAVLNGNRKIDKVEVEEG----------- 234
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
LD + K L YD+ GEEHYN+ISALHKSMR +D DAA+YWL RMLEGGE
Sbjct: 235 -----ALD---QQINTKSLRYDKKGEEHYNIISALHKSMRNSDVDAAVYWLDRMLEGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P+YIARRLVRFASEDVGLAD AL+ AV +QAC F+GMPECNV LA+CV YL+L PKS
Sbjct: 287 PIYIARRLVRFASEDVGLADTRALSLAVDVFQACQFIGMPECNVHLAECVIYLSLGPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--L 538
++Y A+ A+ ++++ NE VPL +RNAPTKLMKE+ YGK Y Y + S +
Sbjct: 347 AVYEAISKAKVDVKKT--GNEPVPLQIRNAPTKLMKELDYGKDYQYAHNTAEKLTSMKTM 404
Query: 539 PPSLEGYKF 547
PP LEG+++
Sbjct: 405 PPDLEGHEY 413
>gi|270308478|ref|YP_003330536.1| AAA family ATPase [Dehalococcoides sp. VS]
gi|270154370|gb|ACZ62208.1| ATPase, AAA family [Dehalococcoides sp. VS]
Length = 457
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/433 (48%), Positives = 286/433 (66%), Gaps = 29/433 (6%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
L +PL+ RMRP +++ VGQDHL+ LR A+ +++PS+IFWGPPG+GKTTLA
Sbjct: 16 LKKSQSPLAARMRPEGLSEFVGQDHLIGEGRALRLAIEGDKIPSLIFWGPPGSGKTTLAN 75
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
I + F LSAV++GV D+R VE+AR+ +RT+LF+DE+HRFNKSQQD+
Sbjct: 76 IIARRLDA--HFSALSAVSAGVADLRRVVEEARERLKFERRRTILFIDEIHRFNKSQQDA 133
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
LP +EDG++V IGATTENPSF + + LLSR +V LNPL ++ ++LKR+++D NGL
Sbjct: 134 ILPYVEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNPLSEKEISLILKRSLED-QNGL 192
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
G + D+ + + S GDAR+ALN LE++ + + P K D
Sbjct: 193 ----GNYHARLLEDSEKHISSFAQGDARIALNILELAVM---ITPPDK-----------D 234
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
GC +V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAAIYWL RMLE
Sbjct: 235 GCR----VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAIYWLGRMLE 290
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GE PLYI RR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA +
Sbjct: 291 AGEDPLYIVRRVIRFATEDVGLADPQGLVVAMAAQQAVHFLGMPEGKLALAEAVIYLATS 350
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAK 534
PKS S+Y A + QK I + + VPLHLRNAPT LMK++GYGK Y Y + + K
Sbjct: 351 PKSNSVYTAYSSVQKEIARNPQAD--VPLHLRNAPTGLMKDLGYGKDYKYAHNYQNHFVK 408
Query: 535 QSFLPPSLEGYKF 547
Q LP +++ +F
Sbjct: 409 QQNLPEAIKNSRF 421
>gi|336394939|ref|ZP_08576338.1| recombination factor protein RarA [Lactobacillus farciminis KCTC
3681]
Length = 442
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 280/430 (65%), Gaps = 34/430 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP + + VGQ HL+ +LR + +++PS+IFWGPPG GKTTLA+ I
Sbjct: 16 NTPLANRVRPTTLEEFVGQKHLIGDKKILREIIDQDKIPSLIFWGPPGVGKTTLAEIIAK 75
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ SAVTSG+ D++ +++A +L + ++T++F+DE+HRFNK+QQD+FLP
Sbjct: 76 KTKAN--FITFSAVTSGINDIKKVMKEA-ELNREMGQKTIVFIDEIHRFNKAQQDAFLPF 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI IGATTENPSF + + LLSRC+V L L D+ V+ +NN L+
Sbjct: 133 VEKGSITLIGATTENPSFEINSALLSRCKVFVLKSLTQDDL-------VELLNNTLNNPK 185
Query: 301 GGTR-VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ V++ D ++ + + +GDARVALN LE++ I + + D +
Sbjct: 186 AFKKEVDIQADTLQLIAAYANGDARVALNTLEMAVINSQTK--------------DDKIT 231
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V +DD ++ K L YD+ GEEHYN+ISALHKSMR +D D+AIYW RMLEGGE
Sbjct: 232 -----VNIDDIRQLLNTKSLRYDKNGEEHYNIISALHKSMRNSDTDSAIYWTTRMLEGGE 286
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLYIARRLVRFASED+GLAD ALN A++ +QAC FLGMPECNV L +CV YL++APKS
Sbjct: 287 DPLYIARRLVRFASEDIGLADTNALNVAINTFQACQFLGMPECNVHLIECVIYLSVAPKS 346
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
+ Y+AL AQK +++ N VPL +RNAPTKLMK +GYGK Y + D D
Sbjct: 347 NAAYKALLKAQKDVKKY--GNLPVPLQIRNAPTKLMKNLGYGKDYKFAHDYQDKLTTMQT 404
Query: 538 LPPSLEGYKF 547
+P + G+++
Sbjct: 405 VPDEVLGHQY 414
>gi|359409761|ref|ZP_09202226.1| AAA ATPase central domain protein [Clostridium sp. DL-VIII]
gi|357168645|gb|EHI96819.1| AAA ATPase central domain protein [Clostridium sp. DL-VIII]
Length = 443
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/434 (46%), Positives = 281/434 (64%), Gaps = 39/434 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL++R+RP +++ +GQDH+L +LR + ++ + S+I WGPPG GKTTLA I N
Sbjct: 15 SPLADRVRPRTLDEYIGQDHILGKGKVLRQLIEADNITSMILWGPPGVGKTTLAMIIANR 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++++ + A + R+ RTV+FVDE+HRFNK+QQD+FLP +
Sbjct: 75 TNAD--FITFSAVTSGIKEIKEIMSKAEQGRMLGT-RTVIFVDEIHRFNKAQQDAFLPHV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I+ IGATTENPSF + + LLSR RV LN L+ D+ LLK + D + G
Sbjct: 132 EKGNIILIGATTENPSFEVNSALLSRSRVFVLNSLQKEDIIKLLKNVLKD-----ERGYG 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR----VPVKEVKEVEQEDESDG 357
++++ + + + +GDAR ALN LE++ ++ ++ V KE+ E G
Sbjct: 187 NRDIDISEELLSLIALYSNGDARTALNVLEMAVMSGELKGRSTVISKEIVE--------G 238
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
C Q K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE
Sbjct: 239 C---------------IQKKALLYDKNGEEHYNLISALHKSMRNSDPDAAVYWLARMLEA 283
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE+PLYIARRL+RFASED+GL+DP AL ++ Y A H+LGMPECNV L Q V YL++AP
Sbjct: 284 GEEPLYIARRLIRFASEDIGLSDPKALELTIAVYNAVHYLGMPECNVNLTQAVVYLSVAP 343
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
KS ++++A A+ + ++ EGVPLHLRNAPTKLM E+GYGKGY Y D D
Sbjct: 344 KSNALFKAYEKAKADAQSTIA--EGVPLHLRNAPTKLMAELGYGKGYRYAHDLEDKVVNM 401
Query: 536 SFLPPSLEGYKFLD 549
LP +L+ ++ +
Sbjct: 402 QCLPENLKAKQYYN 415
>gi|365130510|ref|ZP_09341528.1| hypothetical protein HMPREF1032_04008 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363620080|gb|EHL71382.1| hypothetical protein HMPREF1032_04008 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 446
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 279/427 (65%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + + GQ HLL +LR + +R+PS++FWGPPG GKTTLA+ I N
Sbjct: 15 PLASRMRPRTLEEFAGQRHLLGEGKVLRQLIDGDRVPSMVFWGPPGVGKTTLARIIANRT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAVTSG+K++++ ++ A R + ++T+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 75 KAN--FIDFSAVTSGIKEIKEVMQTAEANR-RFGEQTILFVDEIHRFNKAQQDAFLPFVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L+ L ++ LL+RA+ D + GG
Sbjct: 132 KGSIILIGATTENPSFEINSALLSRCKVFVLHGLSAGELTELLRRALTD-----PRGFGG 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RVE+ +E + + +GDAR ALN LE+ + + +P DG +
Sbjct: 187 RRVELAEGMLEMIANFANGDARTALNTLEMVVLNGDI-LP-------------DGST--- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+V ++ ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 230 -VVPMETLEQCISKKSLLYDKHGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVGLAD AL V+ YQACHFLGMPEC V L YL+ APKS ++
Sbjct: 289 YVARRLVRFASEDVGLADSRALEICVAAYQACHFLGMPECTVHLTHAAVYLSAAPKSNAL 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y+A A+K E + +E VPL +RNAPT+LMKE+ YG+GY Y D D LP
Sbjct: 349 YKAYETAKKDALEML--DEPVPLVIRNAPTRLMKELHYGEGYQYAHDAQDKLTDMQCLPD 406
Query: 541 SLEGYKF 547
SL+G +
Sbjct: 407 SLQGRHY 413
>gi|160936225|ref|ZP_02083598.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
BAA-613]
gi|158441035|gb|EDP18759.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
BAA-613]
Length = 438
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/432 (49%), Positives = 281/432 (65%), Gaps = 37/432 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP +++ VGQ+HLL LLR + +++PS+IFWGPPG GKTTLA I
Sbjct: 13 YNPLASRLRPDDLDGFVGQEHLLGKGKLLRQLIEQDKIPSMIFWGPPGVGKTTLAGIIAK 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAV---EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+ +F+ SAVTSG+K++++ + E++R++ +K T+LFVDE+HRFNK+QQD+F
Sbjct: 73 RT--NAQFINFSAVTSGIKEIKEVMVQAENSRRMGIK----TLLFVDEIHRFNKAQQDAF 126
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSI+ IGATTENPSF + + LLSRCRV L L +D+ L+K A+
Sbjct: 127 LPYVEKGSIILIGATTENPSFEINSALLSRCRVFVLQALTENDLARLIKTALKS-----P 181
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
K +G VE+ I+ + +GDAR ALN LE+ A+T V
Sbjct: 182 KGLGYLNVEITDPMIDMIAGFANGDARTALNTLEM-AVTNGV------------------ 222
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
SP VT D K+ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE
Sbjct: 223 ISPDKTTVTEDVLKQCIGKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEA 282
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLY+ARRLVRFASED+G+AD AL AVS YQACHFLGMPECNV L+ V YL++AP
Sbjct: 283 GEDPLYVARRLVRFASEDIGMADSQALTLAVSAYQACHFLGMPECNVHLSHTVIYLSMAP 342
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
KS S Y A +A+ + + E VPL +RNAPT LMK++ YG GY+Y D + A+
Sbjct: 343 KSNSAYMAYESARTDAQNMLA--EPVPLTIRNAPTGLMKDLHYGDGYVYAHDTEEKIARM 400
Query: 536 SFLPPSLEGYKF 547
LP SL G ++
Sbjct: 401 QCLPDSLAGREY 412
>gi|373464707|ref|ZP_09556227.1| recombination factor protein RarA [Lactobacillus kisonensis F0435]
gi|371761993|gb|EHO50562.1| recombination factor protein RarA [Lactobacillus kisonensis F0435]
Length = 447
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 282/430 (65%), Gaps = 33/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ VGQ+ L+ +LR + S++LPSIIFWGPPG GKTTLA+ I
Sbjct: 16 PLAYRVRPTTLDQFVGQEQLVGKGKVLREIIESDQLPSIIFWGPPGVGKTTLAEIIAKKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+K++RD ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 QA--KFITFSAVTSGIKEIRDIMKDAEANREMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + + LLSRC+V L+ LK D+ L+ + + + +
Sbjct: 133 RGSITLIGATTENPSFEINSALLSRCKVFVLHGLKVADIVQLIHQTLKN-----PAAFPK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E++ A++ + +GDARVALN LE++ + D V
Sbjct: 188 QQIEISDAAVKAIAEFANGDARVALNTLEMAV------------------NNGDKNGDQV 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ D+ + K YD+ GEEHYNLISA+HKSMR +D DAA+YW++RML GGE PL
Sbjct: 230 T-VSADNLHQLMNTKSFLYDKHGEEHYNLISAVHKSMRNSDPDAAVYWVSRMLSGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+GLAD ALN A++ +QAC FLGMPECNV L + V YL+LAPKS ++
Sbjct: 289 YIARRLVRFASEDIGLADTNALNVAINVFQACQFLGMPECNVHLTEAVIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y+A+ A+ ++ S+ NE VPL LRNAPT LM ++GYGKGY Y T D + Q+ +P
Sbjct: 349 YKAVTEAESDVKHSI--NEPVPLQLRNAPTGLMADLGYGKGYQYAHETKDKLTTMQT-MP 405
Query: 540 PSLEGYKFLD 549
SL G+ + +
Sbjct: 406 DSLIGHTYYE 415
>gi|312865956|ref|ZP_07726177.1| replication-associated recombination protein A [Streptococcus
downei F0415]
gi|311098360|gb|EFQ56583.1| replication-associated recombination protein A [Streptococcus
downei F0415]
Length = 449
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/403 (50%), Positives = 273/403 (67%), Gaps = 29/403 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++D VGQ+HL+ LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 APLASRMRPQSLDDFVGQEHLVGQGKFLREMIEKDQVSSMIFWGPPGVGKTTLAEIIAKK 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ KF+ SAV +G+K++R + +A + R ++T++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--NAKFITFSAVMNGIKEIRTIMNEAEENR-SFGEKTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSR RV L PL D+ LLKR + +
Sbjct: 132 EKGSIILIGATTENPSFEVNSALLSRARVFVLKPLAKGDILNLLKRVLRS-----EDAFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G VE++ + +E L + DGDAR ALN LE+ + + + E D +
Sbjct: 187 GIMVEISDELLERLAAYADGDARTALNTLEMLVLNS--------------DKEDDKVTIR 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L+T + K L YD+ GE+HYN+ISALHKSMR +DAD+A+YWL RML GGE P
Sbjct: 233 EELLT-----DLLGTKTLQYDKDGEDHYNIISALHKSMRNSDADSAVYWLGRMLAGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YIARRLVRFASED+GLAD ALN A++ +QAC F+G+PEC+V L QCV YL+LAPKS +
Sbjct: 288 VYIARRLVRFASEDIGLADNNALNLAINVFQACRFIGLPECDVHLTQCVIYLSLAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
Y+A A+QK I++++ NE VPLHLRNA KLMKE+GYGKGY
Sbjct: 348 TYKARVASQKDIKKTL--NEPVPLHLRNATIKLMKEVGYGKGY 388
>gi|406027837|ref|YP_006726669.1| recombination factor protein [Lactobacillus buchneri CD034]
gi|405126326|gb|AFS01087.1| recombination factor protein [Lactobacillus buchneri CD034]
Length = 441
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/429 (47%), Positives = 275/429 (64%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ VGQ L+ +LR + S++LPSIIFWGPPG GKTTLA+ I
Sbjct: 16 PLASRVRPKTLDQFVGQHQLVGKGKVLREIIESDQLPSIIFWGPPGVGKTTLAEIIAKKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV SAVTSG+K++R+ ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 QA--KFVTFSAVTSGIKEIREIMKDAEANREMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + + LLSRC+V L PL+ D+ L+ + + + +
Sbjct: 133 RGSITLIGATTENPSFEINSALLSRCKVFVLQPLETDDIVQLIHQTLKN-----PAAFPK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ A++ + +GDARVALN LE++ V + DG
Sbjct: 188 ETISIDDQAVKEVAEFANGDARVALNTLEMA---------------VNNSPKQDGK---- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ D+ + K YD+ GEEHYN+ISALHKSMR +D DAA+YWL RML GGE PL
Sbjct: 229 VTVSTDNLHQLMNTKSFLYDKHGEEHYNIISALHKSMRNSDPDAAVYWLTRMLSGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VRFASED+GLAD ALN A++ +QAC FLGMPECNV L +C YL+LAPKS ++
Sbjct: 289 YIARRMVRFASEDIGLADTNALNVAINVFQACQFLGMPECNVHLTECAIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y+A A+ ++ S+ NE VPL LRNAPT LM ++GYGKGY Y + D +P
Sbjct: 349 YKATLGAETDVKHSI--NEPVPLQLRNAPTSLMSKLGYGKGYQYAHEAKDKLTNMQTMPD 406
Query: 541 SLEGYKFLD 549
SL G+ + +
Sbjct: 407 SLVGHTYYE 415
>gi|222056545|ref|YP_002538907.1| recombination factor protein RarA [Geobacter daltonii FRC-32]
gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter daltonii FRC-32]
Length = 438
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/429 (47%), Positives = 276/429 (64%), Gaps = 33/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+E+MRP I + VGQ+ LL LLR + S++L S+IFWGPPG+GKTTLA+ I
Sbjct: 15 EAPLAEKMRPRTIAEYVGQEQLLGEGKLLRRLIESDQLTSLIFWGPPGSGKTTLARVIAG 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A S F+ SA+ SG+K++R+ V++A ++R +RT+LFVDE+HRFNKSQQD+FLP
Sbjct: 75 --ATSSHFIFFSAILSGIKEIREIVKEAEEVRKFQGRRTILFVDEIHRFNKSQQDAFLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G IGATTENPSF +I PLLSRC+VL LN L +++ +++ A+ D GL
Sbjct: 133 VEKGVFTIIGATTENPSFEVIAPLLSRCKVLVLNTLSEEELQKIIRNALTDRERGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + + DA+ ++ GD RVALN LE +A A +G
Sbjct: 189 GNLDLAITDDALSYMAEQAGGDGRVALNTLETAARLA-----------------ENGT-- 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T+++ +EA Q K L YD+ GEEHYN+ISA KSMRG+D DAA+YWLAR++E GE
Sbjct: 230 ----ITIENVREAVQKKPLLYDKGGEEHYNVISAFIKSMRGSDPDAAVYWLARLIEAGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+I RR+V ASED+G ADP AL VS QA +GMPE +IL+Q V YLA APKS
Sbjct: 286 PLFILRRMVILASEDIGNADPRALQVVVSALQAFQMVGMPEGRIILSQAVTYLATAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFL 538
+ Y A+ A +R+S Q VP+H+RNAPTKLMK++GY GY Y D +Q +L
Sbjct: 346 ASYLAIDEALAEVRKSGAQP--VPMHIRNAPTKLMKDLGYHAGYRYAHDFAGGYVEQDYL 403
Query: 539 PPSLEGYKF 547
P L+G ++
Sbjct: 404 PERLKGREY 412
>gi|390565277|ref|ZP_10245956.1| Replication-associated recombination protein A [Nitrolancetus
hollandicus Lb]
gi|390171466|emb|CCF85290.1| Replication-associated recombination protein A [Nitrolancetus
hollandicus Lb]
Length = 461
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/428 (47%), Positives = 287/428 (67%), Gaps = 28/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP ++++ GQ ++ +LLRSA+ ++++PS+I WGPPGTGKTTLA+ I +
Sbjct: 16 APLADRMRPRTLDEIAGQQQVIGTGTLLRSAIETDQVPSLILWGPPGTGKTTLARVIATT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSAV++GV D+R V++A + RT+LF+DE+HRFN++QQD+ LP +
Sbjct: 76 T--SARFVQLSAVSAGVADLRREVKEASERLGMHGLRTILFIDEIHRFNRAQQDAILPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENPSF + +PLLSR RV+ L L D+ ++ RA+ D GL G
Sbjct: 134 EDGTITLIGATTENPSFEVNSPLLSRSRVIVLQALDDTDIRTIVMRALSDRERGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + DA++ L + +GDAR LN LE++A+ A E+ E +
Sbjct: 190 ERSLRIEEDALDLLVNLANGDARYVLNTLEMAAVGA-------ELTEAGER--------- 233
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++ + + A + YD+ G+ HY+ ISALHKS+RG+D DAA+YWLARMLE G+ P
Sbjct: 234 --IIRVSQVQAASMRRAANYDQTGDAHYDTISALHKSIRGSDPDAALYWLARMLESGDDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+VR ASED+GLADP AL +++ QA HF+GMPE + LA+ V YLA APKS S
Sbjct: 292 LYIARRVVRAASEDIGLADPQALVVSMAAQQAVHFIGMPEGALALAEAVVYLATAPKSAS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLP 539
+Y+A GAA++ +R + +NE VPLHLRNAPT LM+++GYG Y Y DD +Q LP
Sbjct: 352 LYQAYGAAREDVRAT--RNEPVPLHLRNAPTSLMRDLGYGAEYRYAHDYDDAIVEQQHLP 409
Query: 540 PSLEGYKF 547
+L G+++
Sbjct: 410 GNLAGHRY 417
>gi|404493981|ref|YP_006718087.1| recombination factor protein RarA [Pelobacter carbinolicus DSM
2380]
gi|77546005|gb|ABA89567.1| stalled replication fork rescue ATPase [Pelobacter carbinolicus DSM
2380]
Length = 432
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/431 (48%), Positives = 277/431 (64%), Gaps = 33/431 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
AP++ERMRP + ++VGQ HL+ + +LR + S+RL S+IFWGPPGTGKTT+A+ I
Sbjct: 13 QAPMAERMRPRTLEEMVGQQHLIGTDKVLRRLIESDRLSSVIFWGPPGTGKTTMAQVIAG 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S +FV SAV G+K+VR+ V+ AR+ R N++T+LFVDE+HRFNK+QQD+FLP
Sbjct: 73 ST--RSRFVFFSAVLQGIKEVREIVKKAREERAYHNRKTLLFVDEIHRFNKAQQDAFLPY 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF + + LLSR RV L PL D+ LL+RA+ D S+ +
Sbjct: 131 VEKGDITLIGATTENPSFEINSALLSRSRVFVLQPLDAADIAQLLQRALTD-----SRGL 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
E + + + FL GDARVALNALE++A ++ +E +
Sbjct: 186 DNKFPETDSETLAFLAGQAQGDARVALNALEVAA-------------DLSKEQRA----- 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+TL K+A Q + + YD+ EEHYN+ISA KS+RG+D DAA+YWLARM+E GE
Sbjct: 228 ----ITLQAVKDALQQRGIRYDKGAEEHYNVISAFIKSLRGSDPDAALYWLARMIEAGED 283
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+IARR+V FA+EDVG ADP L AV+ QA HF+GMPE + LAQ YLA APKS
Sbjct: 284 PLFIARRMVIFAAEDVGNADPRGLQLAVASQQAVHFIGMPEGRIPLAQAATYLACAPKSN 343
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFL 538
+ Y + A +R+S + VP HL NAPT+LMK++GYG GY Y D P A Q +L
Sbjct: 344 ASYLGIDRALDTVRKS--GSLPVPAHLCNAPTRLMKDMGYGDGYRYPHDYPGAWVAQEYL 401
Query: 539 PPSLEGYKFLD 549
P L G +F +
Sbjct: 402 PEDLRGKRFYE 412
>gi|118580657|ref|YP_901907.1| recombination factor protein RarA [Pelobacter propionicus DSM 2379]
gi|118503367|gb|ABK99849.1| Recombination protein MgsA [Pelobacter propionicus DSM 2379]
Length = 448
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/452 (46%), Positives = 281/452 (62%), Gaps = 35/452 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
D +TA +APL+ERMRP + + GQ+HL+ + +LR + ++ L S+IFWGPPG
Sbjct: 12 RDQGESTAAPSANAPLAERMRPRTLTEFTGQEHLVGEDRILRRMIETDTLSSLIFWGPPG 71
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA I F+ SA+ SG+K++R+ +A + +RT+LFVDE+HR
Sbjct: 72 CGKTTLAHVIARETRA--HFIFFSAILSGIKEIREIFREAEGV-ASRGRRTILFVDEIHR 128
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNKSQQD+FLP +E G + IGATTENPSF +I PLLSRCRVLTL L+P + L+ +A
Sbjct: 129 FNKSQQDAFLPYVEKGVVTMIGATTENPSFEVIAPLLSRCRVLTLKQLEPSTIAGLIGQA 188
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ D GL G ++++ + ++FL GDARVALN LE++A A R
Sbjct: 189 LADRERGL----GELGLDISEEGLDFLSRQAGGDARVALNTLEVAAGLARER-------- 236
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
L++L+ +EA Q K L YD+ GEEHYN+ISA KSMR +D DAA+
Sbjct: 237 ---------------LISLETVQEALQKKALLYDKRGEEHYNVISAFIKSMRASDPDAAL 281
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLE GE P++I RR++ ASED+G ADP AL AVS QA +GMPE +I+AQ
Sbjct: 282 YWLARMLEAGEDPVFILRRMIILASEDIGNADPRALQLAVSALQAFQVIGMPEGRIIMAQ 341
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
V YLA APKS + Y + A +R+S G GVP+H+RNAPT LMK++GYGKGY Y
Sbjct: 342 AVTYLATAPKSNASYLGIDATLAEVRKSGGL--GVPMHIRNAPTTLMKDLGYGKGYQYAH 399
Query: 529 D--DPSAKQSFLPPSLEGYKFLDWPKSNTTDK 558
D + A Q LP L G F + PK +K
Sbjct: 400 DYAEGYAGQPCLPDELAGRTFYE-PKGYGYEK 430
>gi|420162299|ref|ZP_14669058.1| replication-associated recombination protein A [Weissella koreensis
KCTC 3621]
gi|394744332|gb|EJF33286.1| replication-associated recombination protein A [Weissella koreensis
KCTC 3621]
Length = 440
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/438 (46%), Positives = 294/438 (67%), Gaps = 33/438 (7%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
S A + PL+ R+RP N++D VGQ HLL + +LR + ++++ S+IFWGPPG GKT
Sbjct: 5 SLFANQFENMPLANRVRPRNLDDFVGQGHLLGTDKILREIIENDQVSSMIFWGPPGVGKT 64
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
TLA+ I ++ F+ SAV S + +++ ++ A +L + ++T++FVDE+HRFNK+
Sbjct: 65 TLAEII--ALKTQSNFLRFSAVDSSISNIKKIMKQA-ELDREIGQKTMIFVDEIHRFNKA 121
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQD+FLP +E GSI IGATTENPSF + + LLSRC+V L L+ D+ +L+K AV V
Sbjct: 122 QQDAFLPYVERGSITLIGATTENPSFEINSALLSRCKVFILKELQQEDIVVLIKNAV--V 179
Query: 293 N-NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
N NG + V +++ D + + + DGDAR+ALN LE++ +
Sbjct: 180 NPNGYGEQV----IKIGEDEMRTIANFSDGDARMALNTLEMAVLNG-------------- 221
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
D+++ V +++D+ + K + YD+ GEEHYN+ISALHKSMR +D DAAIYWL
Sbjct: 222 -DKNEN----VITISMDNLSQLITKKFVLYDKNGEEHYNIISALHKSMRNSDVDAAIYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
+RMLEGGE P+YIARRL+RFASED+GLAD ALN AV+ +QAC F+GMPEC+V L + V
Sbjct: 277 SRMLEGGEDPIYIARRLLRFASEDIGLADTNALNIAVNVFQACQFIGMPECDVHLVEAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY--IYTPD 529
YL+LAPKS ++Y+A +A K ++++ +NE VPL +RNAPTK MK++GYGKGY +
Sbjct: 337 YLSLAPKSNAVYKARLSATKDVKQT--KNEPVPLQIRNAPTKFMKDLGYGKGYELAHYAK 394
Query: 530 DPSAKQSFLPPSLEGYKF 547
D +P SLEG+++
Sbjct: 395 DKLTTMKTMPDSLEGHEY 412
>gi|406920287|gb|EKD58382.1| hypothetical protein ACD_56C00141G0012 [uncultured bacterium]
Length = 402
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/430 (47%), Positives = 280/430 (65%), Gaps = 34/430 (7%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ +APL++RMRP + + GQ+ L+ S LRSA+ ++ +PS+I WGPPG+GKTTLA I
Sbjct: 7 LQNAPLADRMRPQTLEEFFGQEELVGEGSFLRSAIENDSVPSMILWGPPGSGKTTLASII 66
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+F+ +SAVTSG+K++R + A++ + K+T+LFVDE+HR+NKSQQD+ L
Sbjct: 67 AGET--KSEFIQISAVTSGIKELRKVISQAQENEWQ-KKKTILFVDEIHRWNKSQQDALL 123
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G + IGATTENPSF + + L+SR RVL L L+ ++E ++ A+ D GL
Sbjct: 124 PHVEHGLMTLIGATTENPSFEVNSALVSRTRVLVLKKLETENIEKIIAHALTDKEKGL-- 181
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G ++E+ + I+ + +GDAR+ALN LE++
Sbjct: 182 --GEMQIEIEKEMIKEIALLANGDARMALNTLELA------------------------- 214
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
S +T + ++ Q HL YD+ GEEHYN+ISALHKSMRG D +AA+YWLARMLEGG
Sbjct: 215 SSQNKKITREVIRQVIQKSHLYYDKGGEEHYNIISALHKSMRGGDENAALYWLARMLEGG 274
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
EQP YIARRL+RFASEDVG+AD AL A + + ACH +G PEC+V LAQ V YL+ APK
Sbjct: 275 EQPTYIARRLLRFASEDVGMADNFALVLANNVFDACHKIGYPECSVHLAQLVVYLSKAPK 334
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFL 538
S+ Y A A+K + E N VP+H+RNAPTKLM+++GYGKGY YTP + S Q +L
Sbjct: 335 SVKTYFAYNKAKKDVEEY--GNLPVPMHIRNAPTKLMEKLGYGKGYKYTPVEDSEGQEYL 392
Query: 539 PPSLEGYKFL 548
P L+ K+L
Sbjct: 393 PTELQKRKYL 402
>gi|358064089|ref|ZP_09150678.1| hypothetical protein HMPREF9473_02741 [Clostridium hathewayi
WAL-18680]
gi|356697722|gb|EHI59293.1| hypothetical protein HMPREF9473_02741 [Clostridium hathewayi
WAL-18680]
Length = 444
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/428 (48%), Positives = 274/428 (64%), Gaps = 37/428 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP ++ D VGQ HLL +LR + +R+ S+IFWGPPG GKTTLA I
Sbjct: 15 YNPLASRLRPESLEDFVGQKHLLGEGKILRQLIDQDRISSMIFWGPPGVGKTTLASIIAG 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAV---EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+F+ SAVTSG+K++++ + E++R++ VK TV+FVDE+HRFNK+QQD+F
Sbjct: 75 RTHA--RFINFSAVTSGIKEIKEVMAQAEESRRMGVK----TVVFVDEIHRFNKAQQDAF 128
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSI+ IGATTENPSF + LLSRC+V L L+ D+E L++RA+ +
Sbjct: 129 LPYVEKGSIILIGATTENPSFEINAALLSRCKVFVLQALEKEDLEDLIRRAIKN-----P 183
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
K G +++ D I + +GDAR ALN LE++ +
Sbjct: 184 KGFGFLNIDITDDMIGMIAEFANGDARTALNTLEMAVNNGEI------------------ 225
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
S VTL+ K+ + L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE
Sbjct: 226 -SAEKTTVTLESLKQCIGKRTLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEA 284
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLY+ARRLVRFASED+G+AD AL AVS YQACHFLGMPECNV L+ V YL++AP
Sbjct: 285 GEDPLYVARRLVRFASEDIGMADSQALQLAVSAYQACHFLGMPECNVHLSHAVIYLSMAP 344
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
K+ S Y A +A+ + + E VPL +RNAPT LMKE+ YG+ YIY D + A
Sbjct: 345 KTNSAYMAYESAKADAQNMLA--EPVPLQIRNAPTSLMKELHYGEDYIYAHDTEEKVAHM 402
Query: 536 SFLPPSLE 543
LP SL+
Sbjct: 403 QCLPDSLK 410
>gi|373451408|ref|ZP_09543332.1| hypothetical protein HMPREF0984_00374 [Eubacterium sp. 3_1_31]
gi|371968543|gb|EHO85999.1| hypothetical protein HMPREF0984_00374 [Eubacterium sp. 3_1_31]
Length = 438
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/424 (48%), Positives = 276/424 (65%), Gaps = 31/424 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ D VGQ HL+ +L + + +++ S+IFWGPPG GKTTLA+ I +
Sbjct: 14 PLASRLRPQSLEDYVGQKHLIGKGKVLWNLIEKDQVTSMIFWGPPGVGKTTLARIIAHKT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+++++ +++A R KRT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 74 --QSRFIDFSAVTSGIREIKQVMKEASDARA-FGKRTILFVDEIHRFNKAQQDAFLPYVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L+ D+ LL+ A+ D K G
Sbjct: 131 KGSIILIGATTENPSFEINSALLSRCKVFVLKGLETSDLVELLQHALQD-----EKGFGT 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V++ ++ + +GDARVALN LE+ + A E+ DE
Sbjct: 186 LNVQMEDSMLDMIAQFANGDARVALNTLEMVVLNA------------EKTDEG------- 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LVT + ++ K L YD+ GEEHYNLISALHKSMR +D AAIYWLARMLE GE PL
Sbjct: 227 YLVTKETLEQCIHQKSLLYDKKGEEHYNLISALHKSMRNSDVQAAIYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVG+AD AL V+ YQACHF+GMPEC+V L V YL+LAPKS ++
Sbjct: 287 YVARRLVRFASEDVGMADSRALEICVAAYQACHFIGMPECSVHLTHAVTYLSLAPKSNAL 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A++ + + +E VPL +RNAPTKLMKE+ YG+GY Y D D LPP
Sbjct: 347 YMAYEHAKEDALKMI--SEPVPLQIRNAPTKLMKELHYGEGYQYAHDYEDKLTTMQCLPP 404
Query: 541 SLEG 544
+L+G
Sbjct: 405 TLQG 408
>gi|91200409|emb|CAJ73456.1| similar to ATPase related to the helicase subunit of the Holliday
junction resolvase [Candidatus Kuenenia stuttgartiensis]
Length = 478
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/437 (49%), Positives = 284/437 (64%), Gaps = 28/437 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL++RMRP N+++ VGQ+HL+ +LRS + + L S+IFWGPPG GKTTLA I N
Sbjct: 49 SPLADRMRPRNLSEFVGQEHLVGEGKILRSFIENKELVSLIFWGPPGVGKTTLALIIAN- 107
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A++ F+ SAV SGVK++R +E+A++ + KRTVLFVDE+HRFNK+QQDSFL +
Sbjct: 108 -AMNAHFITFSAVLSGVKEIRAVIEEAKEQLKFNGKRTVLFVDEIHRFNKAQQDSFLHHV 166
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENPSF + +PLLSRC+VL L PL+ + +L A+ D +GL G
Sbjct: 167 EDGTITLIGATTENPSFEVNSPLLSRCKVLVLEPLRKSHITAILLNALSDRESGL----G 222
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G ++E+ D I+F+ G+AR ALN LE + + VR K+++ V
Sbjct: 223 GQKIEIPQDVIDFIAEFSHGEARAALNTLETAIML--VRPNEKDIRPV------------ 268
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
T++ A EA Q K L YD+ GEEHYN+ISA KSMRG+D DAA+YWLARMLE GE P
Sbjct: 269 ----TMEIAMEAMQRKALLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDP 324
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+I RR+V FA+ED+G ADP AL AVS A HF+GMPE + LAQ V YLA APKS +
Sbjct: 325 LFIVRRMVIFAAEDIGNADPAALQLAVSVKDAFHFVGMPEGWIPLAQGVTYLACAPKSNA 384
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DPSAKQSFLPP 540
Y A AA K +RE P+H+RNAPT LMK +GYGK Y Y +QS+LP
Sbjct: 385 SYMAYLAAIKDVRERGALP--APMHVRNAPTTLMKGMGYGKDYKYPHSFGGYVEQSYLPK 442
Query: 541 SLEGYKFLDWPKSNTTD 557
L+ ++ P N D
Sbjct: 443 ELDSKEYYH-PTQNGFD 458
>gi|406905222|gb|EKD46747.1| hypothetical protein ACD_67C00084G0003 [uncultured bacterium]
Length = 408
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/428 (47%), Positives = 282/428 (65%), Gaps = 34/428 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL++RMRP + + GQ L+ NS L+ A+ ++++PS+I WGPPG+GKTTLA+ I N
Sbjct: 15 NAPLADRMRPQTLEEFFGQQELVGENSFLKKAIENDQVPSMILWGPPGSGKTTLAQIIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ LSAVTSG+K++R + A++ + + K+T+LFVDE+HR+NK+QQD+ LP
Sbjct: 75 ETNAD--FIKLSAVTSGIKELRKTITTAQENQWQK-KKTILFVDEIHRWNKAQQDALLPH 131
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF + + L+SR RV L+ L+ D+E +++ A+ D GL
Sbjct: 132 VEQGLMTLIGATTENPSFEVNSALVSRSRVFVLSKLESADLEKIIENALKDDKRGL---- 187
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G +++ + + I+ + +GDAR+ALN LE S
Sbjct: 188 GLQKIQASPEIIKEMALLANGDARMALNTLE-------------------------AASN 222
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T + K+ Q HL YD+ GEEHYN+ISALHKSMRG DADA++YWLARMLEGGEQ
Sbjct: 223 QNKTITRELLKQIIQKSHLYYDKGGEEHYNIISALHKSMRGGDADASVYWLARMLEGGEQ 282
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P Y+ARRL+RFASED+GLAD AL A + + ACH LGMPEC+V L+Q V YLA A KS+
Sbjct: 283 PTYVARRLLRFASEDIGLADNFALVLANNVFDACHKLGMPECSVHLSQLVIYLANANKSV 342
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPP 540
S Y A A+K + E N VP+H+RNAPTKLM+++GYGKGY YTP + S Q +LP
Sbjct: 343 SAYFAYNKAKKDVEEF--GNLPVPMHIRNAPTKLMEKLGYGKGYKYTPVEGSEGQEYLPK 400
Query: 541 SLEGYKFL 548
L+ K++
Sbjct: 401 ELKKRKYI 408
>gi|224542189|ref|ZP_03682728.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
15897]
gi|224524880|gb|EEF93985.1| recombination factor protein RarA [Catenibacterium mitsuokai DSM
15897]
Length = 436
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 279/427 (65%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL R+RP N+++ VGQ HL+ +LR + ++ + S+IFWGPPG GKTTLA+ I +
Sbjct: 12 PLPSRLRPDNLDEFVGQTHLVGKGKILRRLIETDSISSMIFWGPPGVGKTTLARIIASHT 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAVTSG+K++R+ ++ A RV K T+LFVDE+HRFNKSQQD+FLP +E
Sbjct: 72 HSS--FIDFSAVTSGIKEIREVMKQAENNRVFGEK-TILFVDEIHRFNKSQQDAFLPFVE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V LN L+ D+ LLK A+ K G
Sbjct: 129 KGSIILIGATTENPSFEINGALLSRCKVFVLNALEEEDIVSLLKHAISS-----PKGFGN 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++++ D + + S +GDAR AL+ LE+ + DE DG +
Sbjct: 184 MKIDISDDCLHLIASFSNGDARNALSTLEMV---------------INNSDEKDG----I 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT ++ Q K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 225 IHVTKTIIEQCTQKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAIYWLARMLEAGEDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR++RFASED+GLADP AL+ A Y +CH++GMPEC+VIL Q V Y+++APKS S+
Sbjct: 285 YVARRVIRFASEDIGLADPRALSIANDAYTSCHYIGMPECSVILTQAVVYMSMAPKSNSL 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K + + +E VPL +RNAPTKLMKE+ YG+GY Y D + LP
Sbjct: 345 YVAYETAKKDALKEL--SEPVPLVIRNAPTKLMKELHYGEGYQYAHDTKEKITNMQCLPD 402
Query: 541 SLEGYKF 547
SL+ ++
Sbjct: 403 SLKDREY 409
>gi|440913633|gb|ELR63056.1| ATPase WRNIP1, partial [Bos grunniens mutus]
Length = 417
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/419 (50%), Positives = 267/419 (63%), Gaps = 25/419 (5%)
Query: 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-SVAVSYKFVCLSAVTSGVKDVRDAV 205
+LLRS + ++ +PS+I WGPPG GKTTLA I N S +FV LSA ++ DVRD +
Sbjct: 2 TLLRSLLEASEVPSLILWGPPGCGKTTLAHIIANNSKKHGIRFVTLSATSAKTTDVRDVI 61
Query: 206 EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLL 265
+ A+ + ++T+LF+DE+HRFNKSQQD+FLP +E G+I IGATTENPSF + LL
Sbjct: 62 KQAQNEKRFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALL 121
Query: 266 SRCRVLTLNPLKPHDVEILLKRAV--------------DDVNNGLSKSVGGTRVEVNHDA 311
SRCRV+ L L V +L RAV D +++G S + V + A
Sbjct: 122 SRCRVIVLEKLPVEAVVTILMRAVNSLGIQVLDSSRPADPLSHG-GNSSSESSVLIEDKA 180
Query: 312 IEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAK 371
++ L DGDAR LN L+++ + ++ + P LVT D K
Sbjct: 181 VDTLAHLSDGDARAGLNGLQLAVLARL------SARKTFGKKGGQSYPPSRVLVTESDVK 234
Query: 372 EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRF 431
E Q H+ YDRAGEEHYN ISALHKSMRG+D+ AA+YWL RMLEGGE PLY+ARRLVRF
Sbjct: 235 EGLQRSHILYDRAGEEHYNCISALHKSMRGSDSSAALYWLGRMLEGGEDPLYVARRLVRF 294
Query: 432 ASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQK 491
ASEDVGLADP AL QAV+ YQ CHF+GMPEC V+LAQCV YLA APKS+ +Y A +
Sbjct: 295 ASEDVGLADPSALTQAVATYQGCHFIGMPECEVLLAQCVVYLARAPKSVEVYSAYNNVKA 354
Query: 492 VIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFL 548
+R G VPLHLRNAPT+LMK++GYG+GY Y P +P +Q +LP L G F
Sbjct: 355 CLRGHQGPLPPVPLHLRNAPTRLMKDLGYGQGYKYNPAYSEP-VEQEYLPQELRGVDFF 412
>gi|293402112|ref|ZP_06646251.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304504|gb|EFE45754.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 447
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/424 (48%), Positives = 276/424 (65%), Gaps = 31/424 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ D VGQ HL+ +L + + +++ S+IFWGPPG GKTTLA+ I +
Sbjct: 23 PLASRLRPQSLEDYVGQKHLIGKGKVLWNLIEKDQVTSMIFWGPPGVGKTTLARIIAHKT 82
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+++++ +++A R KRT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 83 --QSRFIDFSAVTSGIREIKQVMKEASDARA-FGKRTILFVDEIHRFNKAQQDAFLPYVE 139
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L+ D+ LL+ A+ D K G
Sbjct: 140 KGSIILIGATTENPSFEINSALLSRCKVFVLKGLETSDLVELLQHALAD-----EKGFGT 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V++ ++ + +GDARVALN LE+ + A E+ DE
Sbjct: 195 LNVQMEDSMLDMIAQFANGDARVALNTLEMVVLNA------------EKTDEG------- 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LVT + ++ K L YD+ GEEHYNLISALHKSMR +D AAIYWLARMLE GE PL
Sbjct: 236 YLVTKETLEQCIHQKSLLYDKKGEEHYNLISALHKSMRNSDVQAAIYWLARMLEAGEDPL 295
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVG+AD AL V+ YQACHF+GMPEC+V L V YL+LAPKS ++
Sbjct: 296 YVARRLVRFASEDVGMADSRALEICVAAYQACHFIGMPECSVHLTHAVTYLSLAPKSNAL 355
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A++ + + +E VPL +RNAPTKLMKE+ YG+GY Y D D LPP
Sbjct: 356 YMAYEHAKEDALKMI--SEPVPLQIRNAPTKLMKELHYGEGYQYAHDYEDKLTTMQCLPP 413
Query: 541 SLEG 544
+L+G
Sbjct: 414 TLQG 417
>gi|422010870|ref|ZP_16357784.1| MgsA AAA+ ATPase, C-terminal domain protein [Actinomyces georgiae
F0490]
gi|394767275|gb|EJF47979.1| MgsA AAA+ ATPase, C-terminal domain protein [Actinomyces georgiae
F0490]
Length = 456
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/428 (48%), Positives = 279/428 (65%), Gaps = 32/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++++VVGQ H + P LRS + ++R PS+IFWGPPG GKTTLA+ I +
Sbjct: 18 PLADRMRPASLDEVVGQSHQIGPGKALRSMIEADRTPSMIFWGPPGVGKTTLARVIAHRT 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAVTSG+K++R+ ++ A + +RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 78 CAS--FIDFSAVTSGIKEIREVMKRA-DAQASVGRRTIVFVDEIHRFNKAQQDAFLPFVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSIV IGATTENPSF + LLSRC+V LN L D LL+RA+ D + G
Sbjct: 135 KGSIVLIGATTENPSFEVNNALLSRCKVFVLNALDEDDTTALLRRALTD-----PRGFGD 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + D + + +GDARVAL+ LE++ + DE G +
Sbjct: 190 REVRIADDLLRAIAVFANGDARVALSTLEMAVLNG---------------DEHGGATT-- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + + K L YD+ +EHYN+ISALHKSMR +D DAA+YWLARMLEGGE PL
Sbjct: 233 --VTAETVGQCISRKSLLYDKDDDEHYNIISALHKSMRNSDPDAAVYWLARMLEGGEDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFASED+GLAD AL AV+ + ACHF+GMPEC+V LA+ V YL+LAPKS S
Sbjct: 291 YVARRITRFASEDIGLADTNALGVAVNAFHACHFIGMPECSVHLAEAVIYLSLAPKSNSA 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI---YTPDDPSAKQSFLP 539
Y A +A+K + Q + VPL +RNAPT+LMK++G+G+GY Y D +A LP
Sbjct: 351 YTAYESAKKDALRT--QADPVPLAIRNAPTRLMKDLGFGRGYRLAHYEADKVAADMRCLP 408
Query: 540 PSLEGYKF 547
SL G ++
Sbjct: 409 DSLVGAEY 416
>gi|357057674|ref|ZP_09118532.1| hypothetical protein HMPREF9334_00249 [Selenomonas infelix ATCC
43532]
gi|355374922|gb|EHG22213.1| hypothetical protein HMPREF9334_00249 [Selenomonas infelix ATCC
43532]
Length = 442
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/452 (46%), Positives = 286/452 (63%), Gaps = 46/452 (10%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
H + PL+ER+RP ++ + VGQ+HLL +LR + S+ + S+IFWGPPG GKTTLA+
Sbjct: 10 HAAYQPLAERVRPRSLEEFVGQEHLLGKGKVLRRLIESDHITSMIFWGPPGVGKTTLAQI 69
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I + KF+ SAVTSG+KD+R +++A + R+ +R ++FVDE+HRFNK+QQD+F
Sbjct: 70 I--AAQTQAKFINFSAVTSGIKDIRMVMQEADRRRM-YGERIIVFVDEIHRFNKAQQDAF 126
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSIV IGATTENPSF + + LLSRCRV L L D+ LL+ A+
Sbjct: 127 LPFVEKGSIVLIGATTENPSFEINSALLSRCRVFVLQGLNTEDIGRLLRHAISS-----E 181
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
+ +GG R+ ++ D + + + +GDAR AL+ LE+ + A +E DG
Sbjct: 182 RGLGGQRIHLSEDGLAAIATFANGDARSALSTLEMIVLNA---------------EERDG 226
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
VT ++ + K L YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE
Sbjct: 227 ----EIYVTEENLAQCISRKSLLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEA 282
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L + V YL+LAP
Sbjct: 283 GEDPLYVARRVARFAAEDVGLADPRALELAVAAYQACHYIGFPECNVHLTEAVIYLSLAP 342
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-------- 529
KS ++ A A R + E VPL +RNAPTKLMK++ YGKGY Y D
Sbjct: 343 KSNAMETAYLTAAADARSMLA--EPVPLVIRNAPTKLMKDLDYGKGYQYAHDTEEHITNM 400
Query: 530 ----DPSAKQSFLPPSLEGY--KF---LDWPK 552
D +++ P+ +G +F LDW K
Sbjct: 401 QCMPDSLVGKTYYHPTEQGMESRFRERLDWIK 432
>gi|227512582|ref|ZP_03942631.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
gi|227084197|gb|EEI19509.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
Length = 441
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/429 (48%), Positives = 279/429 (65%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D GQ LL +LR + S++LPS+IFWGPPG+GKTTLA+ I
Sbjct: 16 PLAYRVRPQTLADFAGQQQLLGKGKVLREIIESDQLPSMIFWGPPGSGKTTLAEIIAKKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV SAVTSG++D+R ++DA R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 KA--KFVTFSAVTSGIRDIRKLMKDAEANRNMGGK-TIVFVDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + LLSRC+V L PL+ +D+ L+K A+ + G +K
Sbjct: 133 KGSITLIGATTENPSFEINAALLSRCKVFVLQPLQVNDIIQLIKHALVHPD-GFAKQ--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE++ +AI + +GDAR+ALN LE++ + E D
Sbjct: 189 -HVEIDGEAIRQIAEFANGDARIALNTLEMAVNNS--------------EKSGDRIR--- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ D+ + K YD++GEEHYNLISALHKSMR +DADAA+YWL+RM+ GE PL
Sbjct: 231 --VSTDNLHQLMATKSFLYDKSGEEHYNLISALHKSMRNSDADAAVYWLSRMMNAGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+GLAD ALN AV+ +QAC F+GMPEC+V L + V YL+LAPKS ++
Sbjct: 289 YIARRLVRFASEDIGLADTNALNVAVNVFQACQFIGMPECDVHLTEAVIYLSLAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
Y+A A + ++ SV NE VPL LRNAPT LM ++ YGKGY Y + + + +P
Sbjct: 349 YKAKLKAAEDVKHSV--NEPVPLQLRNAPTSLMSDLSYGKGYQYAHESKAKLTTMQTMPD 406
Query: 541 SLEGYKFLD 549
SL G+ + +
Sbjct: 407 SLVGHIYYE 415
>gi|365902810|ref|ZP_09440633.1| recombination factor protein RarA [Lactobacillus malefermentans
KCTC 3548]
Length = 442
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/429 (47%), Positives = 282/429 (65%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP+ +++ GQ L+ +LR + S++LPSIIFWGPPG GKTTLA+ I
Sbjct: 14 NSPLANRVRPLTLDEFAGQQSLIGAGKVLREIIDSDQLPSIIFWGPPGVGKTTLAEIIAT 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ FV SAVTSG+ D+R ++ A + R ++T++FVDE+HRFNK+QQD+FLP
Sbjct: 74 QTKAN--FVTFSAVTSGINDIRKIMKAAEENR-DLGEQTIVFVDEIHRFNKAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI IGATTENPSF + LLSRC+V L+ L P ++ +LK A+ K
Sbjct: 131 VERGSITLIGATTENPSFEINAALLSRCKVFVLHSLAPQEILAVLKNAIKH-----PKGF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++++ + + + +GDARVALN LE++ + A Q+D+S
Sbjct: 186 PNLEIKISDETLMTIAHFANGDARVALNTLEMAVLNA------------NQQDKS----- 228
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ DD + + L YD+ GEEHYN+ISALHKSMR +D +AAIYWL+RML+GGE
Sbjct: 229 --VTISEDDLGQLINTRSLRYDKHGEEHYNIISALHKSMRNSDVNAAIYWLSRMLDGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASED+G+AD AL ++ +QAC FLGMPEC+V L + V YL+LAPKS
Sbjct: 287 PLYIARRLVRFASEDIGVADTSALELTINVFQACQFLGMPECDVHLTEAVVYLSLAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S+Y A A+ ++++ NE VPL +RNAPTKLMK++ YGK YIY + DD +
Sbjct: 347 SVYLARENAKDDVKKT--GNEPVPLQIRNAPTKLMKDLDYGKDYIYAHSTDDKLTSMKTM 404
Query: 539 PPSLEGYKF 547
PP LEG+++
Sbjct: 405 PPELEGHEY 413
>gi|57233987|ref|YP_182021.1| recombination factor protein RarA [Dehalococcoides ethenogenes 195]
gi|57224435|gb|AAW39492.1| ATPase, AAA family [Dehalococcoides ethenogenes 195]
Length = 457
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/433 (47%), Positives = 283/433 (65%), Gaps = 29/433 (6%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
L +PL+ RMRP +++ VGQDHL+ LR A+ +++PS+IFWGPPG+GKTTLA
Sbjct: 16 LKKSQSPLAARMRPEGLSEFVGQDHLIGEGRALRLAIEGDKIPSLIFWGPPGSGKTTLAN 75
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
I + F LSAV++GV D+R VE+AR+ +RT+LF+DE+HRFNKSQQD+
Sbjct: 76 IIARRLDA--HFSALSAVSAGVADLRRVVEEARERLKFERRRTILFIDEIHRFNKSQQDA 133
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
LP +EDG++V IGATTENPSF + + LLSR +V LNPL ++ ++LKR+++D
Sbjct: 134 ILPYVEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNPLSEKEISLILKRSLED----- 188
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
+G + +A + + S GDAR+ALN LE++ +T + D
Sbjct: 189 PSGLGNYHARLLEEAEKHISSFAQGDARIALNILELAVMTTP--------------PDKD 234
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
G +V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAA+YWL RMLE
Sbjct: 235 GWR----VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAVYWLGRMLE 290
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GE PLYIARR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA +
Sbjct: 291 AGEDPLYIARRVIRFATEDVGLADPQGLVVAMAAQQAVHFLGMPEGKLALAEAVIYLAAS 350
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAK 534
PKS S+Y A + QK I + + VPLHLRNAPT LMK++GYGK Y Y + + K
Sbjct: 351 PKSNSVYTAYSSVQKEIARNPQAD--VPLHLRNAPTGLMKDLGYGKDYKYAHNYQNHFVK 408
Query: 535 QSFLPPSLEGYKF 547
Q LP +++ +F
Sbjct: 409 QQNLPEAIKNSRF 421
>gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159]
gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159]
Length = 450
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/430 (48%), Positives = 290/430 (67%), Gaps = 33/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++VVGQ+H+L P +LLRS + ++L S+I WGPPG GKTTLA+ I
Sbjct: 17 APLAERMRPRTLDEVVGQEHVLGPGALLRSLIERDQLVSLILWGPPGCGKTTLARLIAKH 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ FV LSAV++ V D+R V++A + +RT++F+DE+HRFN++QQD+ LP +
Sbjct: 77 TRSA--FVPLSAVSASVADIRRVVQEASDRFAQHGQRTIVFIDEIHRFNRAQQDALLPAV 134
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+IV IGATTENPSF + PLLSRCRV+ L PL ++ L++RA+ D GL +
Sbjct: 135 EDGTIVLIGATTENPSFEINAPLLSRCRVVVLEPLSDQAIQTLVERALVDRERGLGEL-- 192
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G R+E +A+ L +GDAR+ALN LE++A A QE
Sbjct: 193 GLRIEP--EALRLLVGLANGDARMALNTLEVAAAGA-------------QE--------- 228
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T++ +A + YDRAG+ HY+ ISALHK++RG+D DAA+YWLARMLE G+ P
Sbjct: 229 -GTITVELVHQAAMRRGSVYDRAGDAHYDTISALHKAIRGSDPDAALYWLARMLEHGDDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRLVR ASED+GLADP AL AV+ QA HFLGMPE + LA+ YLALAPKS +
Sbjct: 288 LYVARRLVRAASEDIGLADPHALVVAVAAQQAVHFLGMPEGALALAEATVYLALAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+YRA AA++ + ++ +NE VPLHLRNAPT L++++G+G GY Y D+P +Q + P
Sbjct: 348 VYRAYEAARRDVVQT--RNEPVPLHLRNAPTTLLRQLGWGVGYRYPHDEPDGIGRQDYFP 405
Query: 540 PSLEGYKFLD 549
P L G ++ +
Sbjct: 406 PLLRGRRYYE 415
>gi|227824827|ref|ZP_03989659.1| recombination factor protein rarA [Acidaminococcus sp. D21]
gi|226905326|gb|EEH91244.1| recombination factor protein rarA [Acidaminococcus sp. D21]
Length = 440
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/429 (48%), Positives = 279/429 (65%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP +++ GQ HLL +LR+ + +++ S+IFWGPPG GKTTLAK I +
Sbjct: 12 HEPLAERLRPKTLDEFQGQQHLLGKGKVLRNLIERDQISSMIFWGPPGVGKTTLAKIIAH 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F+ SAVTSG+K++R ++ A + + + +RT++F+DE+HRFN++QQD+FLP
Sbjct: 72 TTKAS--FITFSAVTSGIKEIRAVMQRADE-QTRFGQRTIVFIDEIHRFNRAQQDAFLPF 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + LLSRC+V L L D+ LLKRA+ D S+ +
Sbjct: 129 VEKGSIILIGATTENPSFEVNGALLSRCKVFVLKELTTEDIMALLKRALTD-----SRGL 183
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + ++ D + + GDAR AL+ LE+ + R DG
Sbjct: 184 GDQHIHMDDDKLRIVAEFASGDARSALSTLEMVVLNGDAR--------------EDGI-- 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
YV TL KE + YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 228 YVTEETL---KECTSQESFLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 284
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VRFASEDVG+AD AL AV+ Y+ACHF+GMPEC+V LA V Y+A++PKS
Sbjct: 285 PLYIARRVVRFASEDVGIADSRALEVAVAAYEACHFIGMPECSVNLAHAVIYMAMSPKSN 344
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
++ A A++ + E VPL +RNAPT LMKE GYGKGYIY D + A L
Sbjct: 345 AMELAYIEAREDALHHL--QEPVPLVIRNAPTALMKEAGYGKGYIYAHDTKEKIAAMDCL 402
Query: 539 PPSLEGYKF 547
P SL+G ++
Sbjct: 403 PDSLKGRRY 411
>gi|282856171|ref|ZP_06265454.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
gi|282585930|gb|EFB91215.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
Length = 439
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/430 (48%), Positives = 280/430 (65%), Gaps = 33/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ HLL P+ +LR + ++ + S+IFWGPPG GKTTLA+ I N
Sbjct: 14 PLAARLRPRSLDEFVGQTHLLGPDKILRRLIVNDTISSMIFWGPPGVGKTTLARIIANQT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+K++R ++ A R K T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 74 KA--EFINFSAVTSGIKEIRTVMQQAESNRAFGGK-TIVFVDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V L L ++ LL+RA+ D + G
Sbjct: 131 KGSIILIGATTENPSFEVNGALLSRCKVFVLQALTTDELVSLLQRALAD-----PRGFGR 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + + +E + + +GDAR AL+ LE+ + + +DG +
Sbjct: 186 QNVRIAPELLEMIANFANGDARSALSTLEMVVLNG---------------NRADGETE-- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 229 --VTPEVLEQCLSKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VRFASEDVGLADP AL AV+ YQACHFLGMPEC+V L Q YL+LAPKS ++
Sbjct: 287 YVARRIVRFASEDVGLADPRALELAVAAYQACHFLGMPECSVHLTQAAVYLSLAPKSNAL 346
Query: 483 YRALGAAQKVIRESVGQ-NEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YRA +A+ +++ Q E VPL +RNAPTKLMKE+ YGKGY Y D + LP
Sbjct: 347 YRAYESAR---HDAISQLAEPVPLVIRNAPTKLMKELDYGKGYQYAHDAAEKLTGMQCLP 403
Query: 540 PSLEGYKFLD 549
SL G + +
Sbjct: 404 DSLLGKTYYE 413
>gi|352684160|ref|YP_004896145.1| recombination factor protein rarA [Acidaminococcus intestini
RyC-MR95]
gi|350278815|gb|AEQ22005.1| recombination factor protein rarA [Acidaminococcus intestini
RyC-MR95]
Length = 442
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/429 (48%), Positives = 279/429 (65%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP +++ GQ HLL +LR+ + +++ S+IFWGPPG GKTTLAK I +
Sbjct: 14 HEPLAERLRPKTLDEFQGQQHLLGKGKVLRNLIERDQISSMIFWGPPGVGKTTLAKIIAH 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F+ SAVTSG+K++R ++ A + + + +RT++F+DE+HRFN++QQD+FLP
Sbjct: 74 TTKAS--FITFSAVTSGIKEIRAVMQRADE-QTRFGQRTIVFIDEIHRFNRAQQDAFLPF 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + LLSRC+V L L D+ LLKRA+ D S+ +
Sbjct: 131 VEKGSIILIGATTENPSFEVNGALLSRCKVFVLKELTTEDIMALLKRALTD-----SRGL 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + ++ D + + GDAR AL+ LE+ + R DG
Sbjct: 186 GDQHIHMDDDKLRIVAEFASGDARSALSTLEMVVLNGDAR--------------EDGI-- 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
YV TL KE + YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 230 YVTEETL---KECTSQESFLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VRFASEDVG+AD AL AV+ Y+ACHF+GMPEC+V LA V Y+A++PKS
Sbjct: 287 PLYIARRVVRFASEDVGIADSRALEVAVAAYEACHFIGMPECSVNLAHAVIYMAMSPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
++ A A++ + E VPL +RNAPT LMKE GYGKGYIY D + A L
Sbjct: 347 AMELAYIEAREDALHHL--QEPVPLVIRNAPTALMKEAGYGKGYIYAHDTKEKIAAMDCL 404
Query: 539 PPSLEGYKF 547
P SL+G ++
Sbjct: 405 PDSLKGRRY 413
>gi|330838519|ref|YP_004413099.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
35185]
gi|329746283|gb|AEB99639.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
35185]
Length = 442
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/456 (47%), Positives = 281/456 (61%), Gaps = 53/456 (11%)
Query: 95 EIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVC 154
E+E LF+R +VD PL+ RMRP ++ D VGQ HL+ +LR +
Sbjct: 2 EMEQESLFRR-----EVD---------LPLAARMRPKSLADYVGQQHLVGKGKMLRKLIA 47
Query: 155 SNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK 214
+++ S+IFWGPPG GKTTLA+ I +F+ SAVTSG+K++R +++A K
Sbjct: 48 EDKIFSMIFWGPPGVGKTTLARIIARETKA--RFIDFSAVTSGIKEIRTVMQEAEK-NTA 104
Query: 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLN 274
+RT+LFVDE+HRFNK+QQD+FLP +E GSI+ IGATTENPSF + + LLSRCRV L
Sbjct: 105 YGERTILFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSALLSRCRVFVLK 164
Query: 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
L+ D+ LL+RA+ + G +VE+ D +E L +GDAR AL+ LEI
Sbjct: 165 ALQKEDILGLLRRAL-----AAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVV 219
Query: 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISA 394
+ V E D VT + ++ + K L YD+ GEEHYNLISA
Sbjct: 220 LNGEV--------------EKDAIK-----VTRETVEQCLEKKSLLYDKKGEEHYNLISA 260
Query: 395 LHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQAC 454
LHKSMR +DADA++YWLARMLE GE PLYIARR+VRFASEDVGLADP AL AV+ YQAC
Sbjct: 261 LHKSMRNSDADASVYWLARMLEAGEDPLYIARRIVRFASEDVGLADPRALELAVAAYQAC 320
Query: 455 HFLGMPECNVILAQCVAYLALAPKS----ISIYRALGAAQKVIRESVGQNEGVPLHLRNA 510
HF+GMPEC+V L + Y+ALAPKS ++ +A A K + E VPL +RNA
Sbjct: 321 HFIGMPECSVHLTEAAVYMALAPKSNAMEVAYLKAKADATKRLAEP------VPLVIRNA 374
Query: 511 PTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEG 544
T+LMK+ GYGKGY Y + D LP L G
Sbjct: 375 VTRLMKDEGYGKGYQYAHNTKDKLTNMQCLPDDLLG 410
>gi|260888003|ref|ZP_05899266.1| replication-associated recombination protein A [Selenomonas
sputigena ATCC 35185]
gi|260862254|gb|EEX76754.1| replication-associated recombination protein A [Selenomonas
sputigena ATCC 35185]
Length = 450
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/456 (47%), Positives = 281/456 (61%), Gaps = 53/456 (11%)
Query: 95 EIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVC 154
E+E LF+R +VD PL+ RMRP ++ D VGQ HL+ +LR +
Sbjct: 10 EMEQESLFRR-----EVD---------LPLAARMRPKSLADYVGQQHLVGKGKMLRKLIA 55
Query: 155 SNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK 214
+++ S+IFWGPPG GKTTLA+ I +F+ SAVTSG+K++R +++A K
Sbjct: 56 EDKIFSMIFWGPPGVGKTTLARIIARETKA--RFIDFSAVTSGIKEIRTVMQEAEK-NTA 112
Query: 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLN 274
+RT+LFVDE+HRFNK+QQD+FLP +E GSI+ IGATTENPSF + + LLSRCRV L
Sbjct: 113 YGERTILFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSALLSRCRVFVLK 172
Query: 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
L+ D+ LL+RA+ + G +VE+ D +E L +GDAR AL+ LEI
Sbjct: 173 ALQKEDILGLLRRAL-----AAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVV 227
Query: 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISA 394
+ V E D VT + ++ + K L YD+ GEEHYNLISA
Sbjct: 228 LNGEV--------------EKDAIK-----VTRETVEQCLEKKSLLYDKKGEEHYNLISA 268
Query: 395 LHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQAC 454
LHKSMR +DADA++YWLARMLE GE PLYIARR+VRFASEDVGLADP AL AV+ YQAC
Sbjct: 269 LHKSMRNSDADASVYWLARMLEAGEDPLYIARRIVRFASEDVGLADPRALELAVAAYQAC 328
Query: 455 HFLGMPECNVILAQCVAYLALAPKS----ISIYRALGAAQKVIRESVGQNEGVPLHLRNA 510
HF+GMPEC+V L + Y+ALAPKS ++ +A A K + E VPL +RNA
Sbjct: 329 HFIGMPECSVHLTEAAVYMALAPKSNAMEVAYLKAKADATKRLAEP------VPLVIRNA 382
Query: 511 PTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEG 544
T+LMK+ GYGKGY Y + D LP L G
Sbjct: 383 VTRLMKDEGYGKGYQYAHNTKDKLTNMQCLPDDLLG 418
>gi|291087419|ref|ZP_06571936.1| replication-associated recombination protein A [Clostridium sp.
M62/1]
gi|291075102|gb|EFE12466.1| ATPase, AAA family [Clostridium sp. M62/1]
Length = 484
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/425 (48%), Positives = 277/425 (65%), Gaps = 31/425 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ RMRP ++ + VGQ HLL LLR+ + +++ S+IFWGPPG GKTTLA I N
Sbjct: 35 YSPLASRMRPESLEEFVGQSHLLGEGMLLRNLIERDKVSSMIFWGPPGVGKTTLAGIIAN 94
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ SAVTSG+K++R+ + A + R + K TV+FVDE+HRFNK+QQD+FLP
Sbjct: 95 RTNAG--FINFSAVTSGIKEIREVMAKAEEARHRGMK-TVVFVDEIHRFNKAQQDAFLPY 151
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRCRV L L ++ LLK A+ S+
Sbjct: 152 VERGSIILIGATTENPSFEINSALLSRCRVFVLKELSREELTALLKHALTS-----SRGY 206
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G +VE+ + ++ + GDAR ALN LE++ + D +
Sbjct: 207 GYLKVEIEEELLDMIARFAGGDARTALNVLEMAVTNGEI-----------HGDRT----- 250
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V+ + K+ K L YD+ GEEHYNLISALHKSMR +D DAA+YWL RMLE GE
Sbjct: 251 ---VVSREVIKQCIGKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLERMLEAGED 307
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRL+RFASED+G+AD AL+ AV+ YQACHFLGMPEC+V L V YL++APKS
Sbjct: 308 PLYVARRLIRFASEDIGMADSRALSLAVAAYQACHFLGMPECDVNLVHTVIYLSMAPKSN 367
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S YRA AA+K +RE ++E VPL +RNAPTKLM E+ YG+GY Y + + + L
Sbjct: 368 SSYRACEAAKKDVREL--EDEPVPLVIRNAPTKLMAELHYGEGYQYAHSTAEKMTRMQCL 425
Query: 539 PPSLE 543
P SL+
Sbjct: 426 PDSLK 430
>gi|338813487|ref|ZP_08625599.1| recombination factor protein RarA [Acetonema longum DSM 6540]
gi|337274529|gb|EGO63054.1| recombination factor protein RarA [Acetonema longum DSM 6540]
Length = 439
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/428 (48%), Positives = 282/428 (65%), Gaps = 31/428 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++R+RP N+++ +GQ+H+L+ +LR + S+ + S+I WGPPG GKTTLA I N
Sbjct: 15 APLADRIRPRNLDEYIGQEHILAKGKVLRQIIESDNITSMILWGPPGVGKTTLAMIIANM 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+FV SAVTSG+K++++ + A + R + +RTV+FVDE+HRFNK+QQD+FLP +
Sbjct: 75 THA--RFVTFSAVTSGIKEIKEIMVKAEQTR-RMGERTVIFVDEIHRFNKAQQDAFLPHV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I+ IGATTENPSF + + LLSR RV L+ L+ D+ LLK A+ + + G
Sbjct: 132 EKGNIILIGATTENPSFEVNSALLSRSRVFVLHSLQTEDIIKLLKYALRE-----PRGYG 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G + + + +E + +GDAR ALN LE+ A+ R + V ++ +GC
Sbjct: 187 GQNIAIAEELLELIAVYANGDARTALNVLEM-AVAGGDR---QGDATVISKETVEGC--- 239
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
Q K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE+P
Sbjct: 240 ------------IQKKALLYDKNGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEEP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARRLVRFASED+GLADP AL V+ Y A HFLGMPECNV L Q V YL++A KS +
Sbjct: 288 LFIARRLVRFASEDIGLADPRALEMTVAVYNAVHFLGMPECNVHLTQAVVYLSVAAKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LP 539
+Y A +A++ ++ EGVPLHLRNAPT+LM + YGKGY Y D + + LP
Sbjct: 348 LYVAYESAKRDANSTMA--EGVPLHLRNAPTRLMANLDYGKGYQYAHDAAAKVTNMQCLP 405
Query: 540 PSLEGYKF 547
+L+G ++
Sbjct: 406 DNLKGRQY 413
>gi|312870086|ref|ZP_07730222.1| replication-associated recombination protein A [Lactobacillus oris
PB013-T2-3]
gi|417885709|ref|ZP_12529860.1| recombination factor protein RarA [Lactobacillus oris F0423]
gi|311094389|gb|EFQ52697.1| replication-associated recombination protein A [Lactobacillus oris
PB013-T2-3]
gi|341594628|gb|EGS37312.1| recombination factor protein RarA [Lactobacillus oris F0423]
Length = 441
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/429 (48%), Positives = 281/429 (65%), Gaps = 35/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + VGQ HL+ P+ +LR + +++L S+IFWGPPG GKTTLA+ I
Sbjct: 16 PLANRVRPSTLAEFVGQQHLIGPHRVLRELIENDQLSSLIFWGPPGVGKTTLAEIIAQQT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
FV SAVTS +KD+R +++A + R + +RT+ F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 KA--HFVTFSAVTSSIKDIRKLMQEAEQNR-EYGERTICFIDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L D+E ++KRA L+
Sbjct: 133 RGSIILIGATTENPSFEINSALLSRCKVFVLKSLTTADLEEVIKRA-------LAHPAAF 185
Query: 303 TRVEVNH--DAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++EV+ DAI + +GDARVALN LE++ + +E K+V
Sbjct: 186 PQLEVDCQPDAIHLIAQFANGDARVALNTLEMAVLNGK-----REGKKVT---------- 230
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T D + K L YD+ EEHYN+ISALHKSMR +D DAA+YW +RML+GGE
Sbjct: 231 ----ITEQDLSQLINTKSLRYDKHDEEHYNIISALHKSMRNSDVDAAVYWCSRMLDGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASED+GLAD ALN A++ +QAC FLGMPEC+V L +CV YLA APKS
Sbjct: 287 PLYIARRLVRFASEDIGLADTNALNVAINTFQACQFLGMPECDVHLTECVIYLACAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
++Y A A++VI+++ N VPL +RNAPTKLM ++GYGKGY Y D D + +
Sbjct: 347 AVYAARQRAKRVIKKT--GNLPVPLQIRNAPTKLMADLGYGKGYQYAHDSKDKLTTMTTI 404
Query: 539 PPSLEGYKF 547
PP ++ F
Sbjct: 405 PPEIKDEHF 413
>gi|312897412|ref|ZP_07756836.1| recombination factor protein RarA [Megasphaera micronuciformis
F0359]
gi|310621473|gb|EFQ05009.1| recombination factor protein RarA [Megasphaera micronuciformis
F0359]
Length = 443
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/427 (48%), Positives = 278/427 (65%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP I+D++GQ HLL +LR + ++ +PS+IFWGPPG GKTTLA+ I
Sbjct: 15 PLAARIRPKTIDDIIGQGHLLGEGRILRRFIENDTVPSMIFWGPPGVGKTTLARVIAGHT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ FV SAVT G+K++R ++ A + + ++T+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 75 KAA--FVDFSAVTGGIKEIRQIMQKADE-NTRYGEKTILFVDEIHRFNKAQQDAFLPFVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSIV IGATTENPSF + LLSRC+V L+ L D++ LLKRA+ + + G
Sbjct: 132 KGSIVLIGATTENPSFEINGALLSRCKVFVLHALTADDIKELLKRALAE-----PEGFGT 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ D + + +GD R AL+ LE++ + + E D
Sbjct: 187 REIRIDDDLLGAIALFANGDGRSALSTLEMAVLNGEI--------------EGDAL---- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT D ++ K L YD+ GEEHYNLISALHKSMR +DADA++YWLARMLE GE PL
Sbjct: 229 -VVTKDSLEQCISKKSLLYDKKGEEHYNLISALHKSMRNSDADASVYWLARMLEAGEDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VRFA+EDVGLADP A+ AV+ YQACHF+GMPEC+V L + V YL+LAPKS ++
Sbjct: 288 YVARRVVRFAAEDVGLADPRAMEIAVAAYQACHFIGMPECSVHLTEAVVYLSLAPKSNAM 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
A +A+K E + E VPL +RNAPTKLMK++ YGKGY Y + P + LP
Sbjct: 348 ETAYLSARKDALEQIA--EPVPLQIRNAPTKLMKDLEYGKGYDYAHNHPEGLTAMECLPD 405
Query: 541 SLEGYKF 547
SL G +
Sbjct: 406 SLRGRTY 412
>gi|161507635|ref|YP_001577589.1| recombination factor protein RarA [Lactobacillus helveticus DPC
4571]
gi|403514890|ref|YP_006655710.1| recombination factor protein RarA [Lactobacillus helveticus R0052]
gi|160348624|gb|ABX27298.1| putative chromosome segregation helicase [Lactobacillus helveticus
DPC 4571]
gi|403080328|gb|AFR21906.1| recombination factor protein RarA [Lactobacillus helveticus R0052]
Length = 441
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/431 (48%), Positives = 282/431 (65%), Gaps = 35/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL++R+RP N++D VGQ++L+ +LR + +R+PS+I WGPPGTGKTTLA+ I
Sbjct: 15 NTPLADRVRPQNLDDFVGQENLIGHGKILRDLIEKDRVPSLILWGPPGTGKTTLAEIIAK 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ SAVTS +KD+R +E+A + R + +R ++F+DE+HRFNK+QQD+FLP
Sbjct: 75 RTKAH--FITFSAVTSSIKDIRKIMEEAEQNR-QFGERNIVFIDEIHRFNKAQQDAFLPF 131
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI IGATTENP F + + LLSR +V L+ LK D+ +LLKRA+ + N
Sbjct: 132 VEQGSITLIGATTENPYFEVNSALLSRAKVFVLHSLKVDDIVLLLKRALKNPN-----GF 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V+V+ +A++ + +GDAR +LN LEI+ + K K+V
Sbjct: 187 PDLNVKVSDEALKQIAIFGNGDARSSLNTLEIAVLNGK-----KSGKDV----------- 230
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+DDA K+ K L YD+ GEEHYNLISALHKSMR +D DAA+YW+ RM+EGG
Sbjct: 231 -----VIDDAVLKQLINVKSLRYDKHGEEHYNLISALHKSMRNSDVDAAVYWVNRMIEGG 285
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARRL+RFASEDVGLAD +LN A++ +QAC ++G+PEC V L +CV YLA PK
Sbjct: 286 EDPLYIARRLIRFASEDVGLADTNSLNVAINTFQACKYIGLPECGVHLTECVIYLACTPK 345
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQS 536
S S+Y A A+K+I+++ N VPL +RNAPTKLMK++ YGK Y Y D P
Sbjct: 346 SNSVYVAQEKAKKLIKKT--GNLPVPLQIRNAPTKLMKDLHYGKDYQYAQDSPDKLTNMK 403
Query: 537 FLPPSLEGYKF 547
+PP LEG F
Sbjct: 404 TMPPELEGKTF 414
>gi|400291120|ref|ZP_10793147.1| recombination factor protein RarA [Streptococcus ratti FA-1 = DSM
20564]
gi|399921911|gb|EJN94728.1| recombination factor protein RarA [Streptococcus ratti FA-1 = DSM
20564]
Length = 444
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/403 (49%), Positives = 274/403 (67%), Gaps = 29/403 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP N++D VGQ HL+ LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 APLASRVRPTNLDDFVGQKHLVGEGKFLREMIDKDQVSSMIFWGPPGVGKTTLAEIIAKK 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
KF+ SAV +G+K++R + +A + R + +RT++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--KSKFITFSAVLNGIKEIRKIMNEAEENR-QLGERTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSR RV L L D+ LLKR + S++
Sbjct: 132 EKGSIILIGATTENPSFEVNSALLSRTRVFVLKQLSEGDITDLLKRVLKS-----SRAFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ V+ D ++ + +GDAR ALN LE+ I + ++K+ + D
Sbjct: 187 DLELTVSDDLLKQIAIYSNGDARTALNTLEMLVINS-------DIKDKQVTISGD----- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L L D K A+ YD+AGEEHYN+ISALHKSMR +D D+AIYWL RM++GGE P
Sbjct: 235 -LLEELLDKKTAY------YDKAGEEHYNIISALHKSMRNSDVDSAIYWLGRMIDGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+GLAD ALN AV+ +QAC ++G+PEC+V L QCV YL+LAPKS +
Sbjct: 288 LYIARRLIRFASEDIGLADNSALNLAVNVFQACRYIGLPECDVHLTQCVIYLSLAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
+Y+A A QK I++++ +E VPLHLRNA TKLMK++GYGKGY
Sbjct: 348 VYKARTAVQKDIKQTI--DEPVPLHLRNATTKLMKKVGYGKGY 388
>gi|365838881|ref|ZP_09380138.1| recombination factor protein RarA [Anaeroglobus geminatus F0357]
gi|364566391|gb|EHM44083.1| recombination factor protein RarA [Anaeroglobus geminatus F0357]
Length = 443
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/427 (48%), Positives = 274/427 (64%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP I+D++GQ H+L N +LR + + +PS+IFWGPPG GKTTLA+ I N
Sbjct: 15 PLAARLRPRTIDDIIGQRHILGENRVLRRLIEHDTVPSMIFWGPPGVGKTTLARVIANHT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAVT G+K++R ++ A + + +RT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 75 KAS--FLDFSAVTGGIKEIRQVMQKADE-NTRYGERTILFVDEIHRFNKAQQDAFLPFVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V L L D+ LLKRA+ D G
Sbjct: 132 KGSIILIGATTENPSFEINGALLSRCKVFVLQALSTDDILTLLKRAIAD-----PSGFGA 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR AL+ LE++ + + E D V
Sbjct: 187 QEIHIADKFLAAIAEFANGDARSALSTLEMAVLNGDL--------------EGD-----V 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V + ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 228 ITVNKESLEQCISKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VRF++EDVGLADP A+ +++ YQACHF+GMPEC+V L + V YL+LAPKS ++
Sbjct: 288 YIARRIVRFSAEDVGLADPRAMEISIAAYQACHFIGMPECSVHLTEAVIYLSLAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--LPP 540
A AA+K E E VPL +RNAPT+LMKE+ YGK Y Y ++P+ + LPP
Sbjct: 348 EVAYLAARKDALEQFA--EPVPLQIRNAPTRLMKELNYGKDYEYAHNNPAGLTAMECLPP 405
Query: 541 SLEGYKF 547
SL G +
Sbjct: 406 SLRGRMY 412
>gi|407010249|gb|EKE25195.1| hypothetical protein ACD_5C00254G0002 [uncultured bacterium]
Length = 402
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 280/430 (65%), Gaps = 34/430 (7%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ +APL++RMRP + + GQD L+ S LRSA+ + +PS+I WGPPG+GKTTLA I
Sbjct: 7 LQNAPLADRMRPQTLEEFFGQDELVGEGSFLRSAIEKDNVPSMILWGPPGSGKTTLASII 66
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+F+ +SAVTSG+K++R + +A++ + K+T+LFVDE+HR+NKSQQD+ L
Sbjct: 67 AGET--KSEFIQISAVTSGIKELRKVIAEAQENEWQK-KKTILFVDEIHRWNKSQQDALL 123
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G + IGATTENPSF + + L+SR RVL L L+ ++E ++ A+++ GL
Sbjct: 124 PHVEHGLVTLIGATTENPSFEVNSALVSRTRVLVLKKLEVENIEKIITHALNNKEKGL-- 181
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G ++E++ I + +GDAR+ALN LE++
Sbjct: 182 --GKMQIEIDEQMIREISLLSNGDARMALNTLELA------------------------- 214
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
S +T + ++ Q HL YD+ GEEHYN+ISALHKSMRG D +A++YWLARMLEGG
Sbjct: 215 SSQSKKITREVIRQVIQKSHLYYDKGGEEHYNIISALHKSMRGGDENASLYWLARMLEGG 274
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
EQP YIARRL+RFASEDVG+AD AL A + + AC+ LG PEC+V LAQ V YL+ APK
Sbjct: 275 EQPTYIARRLLRFASEDVGMADNFALVLANNVFDACYKLGYPECSVHLAQLVVYLSKAPK 334
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFL 538
S+ Y A A+K + E N VP+H+RNAPTKLM+++GYGKGY YTP + S Q +L
Sbjct: 335 SVKTYFAYNKAKKDVEEY--GNLPVPMHIRNAPTKLMEKLGYGKGYKYTPVEDSDGQEYL 392
Query: 539 PPSLEGYKFL 548
P ++ K+L
Sbjct: 393 PQKIKNRKYL 402
>gi|320354919|ref|YP_004196258.1| recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
gi|320123421|gb|ADW18967.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
Length = 499
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/442 (47%), Positives = 279/442 (63%), Gaps = 21/442 (4%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
+V S +PH+PL+ERMRP + D VGQ HL+ L + S R+PS++ WGPPG+
Sbjct: 42 EVYSAMLAQLPHSPLAERMRPTRLEDFVGQRHLVGEGKFLNQLIDSGRIPSLVLWGPPGS 101
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTTLA + + AVS FV SAV SGVK++R V+ A+ + + + T+LFVDE+HRF
Sbjct: 102 GKTTLATILAH--AVSAHFVFFSAVLSGVKEIRQIVDQAKSVHEQDGRPTILFVDEIHRF 159
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
NKSQQD+FLP +E G + IGATTENPSF + PLLSRC+VL L PL +D++ +++RA+
Sbjct: 160 NKSQQDAFLPHVESGLLTLIGATTENPSFQITAPLLSRCQVLLLAPLDRNDLKQVMRRAL 219
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
D + G G R+ ++ A++ L DGD R ALN LE +A + ++++K
Sbjct: 220 IDTSVGF----GDDRLTIDDQALDLLADTADGDCRRALNHLETAAA-----LTLEQLKRQ 270
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
E++ +T+ +E Q K L YD GEEHYNLISALHKS+R +D D A+Y
Sbjct: 271 PAAGEAERT------ITVAQVRETLQQKTLRYDARGEEHYNLISALHKSLRDSDPDGAVY 324
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WL RML GGE PLYIARR++RFASED+G ADP AL A++ +A H LG PE + L Q
Sbjct: 325 WLGRMLLGGEDPLYIARRMIRFASEDIGNADPQALQVALNGREAYHMLGSPEGELALYQV 384
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
AYLA APKS ++Y + I E G + VPLH+RNAPT LMK+ GYG GY Y D
Sbjct: 385 AAYLATAPKSNAVYVCTHRVRADI-ERTG-SLPVPLHIRNAPTALMKDFGYGHGYQYAHD 442
Query: 530 DPSA--KQSFLPPSLEGYKFLD 549
D Q LPP L G + +
Sbjct: 443 DRDGLVLQEHLPPELAGRVYYE 464
>gi|154509637|ref|ZP_02045279.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
17982]
gi|153799271|gb|EDN81691.1| ATPase, AAA family [Actinomyces odontolyticus ATCC 17982]
Length = 563
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/428 (48%), Positives = 277/428 (64%), Gaps = 32/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++++VVGQ H + P LRS + ++R PS+IFWGPPG GKTTLA+ I
Sbjct: 19 PLADRMRPTSLDEVVGQSHQIGPGKALRSMIEADRTPSMIFWGPPGVGKTTLARVIARHT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAVTSG+K++R+ ++ A + +RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 79 HAS--FIDFSAVTSGIKEIREVMKQA-DAQASMGRRTIVFVDEIHRFNKAQQDAFLPFVE 135
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V L+ L D+ L++RA+ D + GG
Sbjct: 136 KGSIILIGATTENPSFEINNALLSRCKVFVLHGLTEEDLVDLMRRALKD-----PRGFGG 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + + + + DGDARVAL+ LE+ + DG V
Sbjct: 191 REVRIEEKLLRAIATFADGDARVALSTLEMVVLNGV----------------EDGG---V 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V + ++ K L YD+ GEEHYN+ISALHKSMR +D DAA+YWLARMLEGGE PL
Sbjct: 232 TTVGPETVRQLTSTKSLRYDKDGEEHYNIISALHKSMRNSDPDAAVYWLARMLEGGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFASEDVGLAD ALN A++ +QA F+GMPEC+V LAQ V YL+LAPKS S
Sbjct: 292 YVARRITRFASEDVGLADTNALNVAINAFQAAQFIGMPECSVHLAQAVIYLSLAPKSNSS 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+K ++ E VP+ +RNAPT+LMK++GYG+GY D+ +A LP
Sbjct: 352 YVAYEHAKKDALHTLA--EPVPMAIRNAPTRLMKDLGYGRGYRLAHDEADKVAADMRCLP 409
Query: 540 PSLEGYKF 547
SL ++
Sbjct: 410 NSLASAEY 417
>gi|289432988|ref|YP_003462861.1| ATPase AAA [Dehalococcoides sp. GT]
gi|452205475|ref|YP_007485604.1| AAA family ATPase [Dehalococcoides mccartyi BTF08]
gi|288946708|gb|ADC74405.1| AAA ATPase central domain protein [Dehalococcoides sp. GT]
gi|452112531|gb|AGG08262.1| AAA family ATPase [Dehalococcoides mccartyi BTF08]
Length = 452
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/429 (49%), Positives = 285/429 (66%), Gaps = 29/429 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+PL+ RMRP + + VGQ HL+ LR ++ S+++PS+IFWGPPG+GKTTLA I +
Sbjct: 15 QSPLAARMRPETLAEFVGQSHLIGEGRALRLSLESDKIPSLIFWGPPGSGKTTLANIIAH 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S+ F LSAV++GV D+R VE+AR+ ++RT+LF+DE+HRFNKSQQD+ LP
Sbjct: 75 SLDA--HFSALSAVSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++V IGATTENPSF + + LLSR +V LN L ++ ++LKR+++ NGL
Sbjct: 133 VEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNSLSEKEISVILKRSLEG-ENGL---- 187
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + +A + + S GDAR+ALN LE++ +T +P K DG
Sbjct: 188 GNYHARLLEEAEKHISSFAQGDARIALNILELAVMTT---LPDK-----------DGWR- 232
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAAIYWL RMLE GE
Sbjct: 233 ---VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAIYWLGRMLEAGED 289
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA APKS
Sbjct: 290 PLYIARRVIRFATEDVGLADPQGLVIAMAAQQAVHFLGMPEGKLALAEAVIYLAGAPKSN 349
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S+Y A QK I + + VPLHLRNAPT LMK++GYGK Y Y D + KQ L
Sbjct: 350 SVYVAYTNVQKEIARNPQAD--VPLHLRNAPTGLMKDLGYGKDYKYAHDYQNHFVKQQNL 407
Query: 539 PPSLEGYKF 547
P ++ ++F
Sbjct: 408 PEVIKDHRF 416
>gi|313895502|ref|ZP_07829058.1| replication-associated recombination protein A [Selenomonas sp.
oral taxon 137 str. F0430]
gi|402303190|ref|ZP_10822287.1| putative replication-associated recombination protein A
[Selenomonas sp. FOBRC9]
gi|312975628|gb|EFR41087.1| replication-associated recombination protein A [Selenomonas sp.
oral taxon 137 str. F0430]
gi|400379125|gb|EJP31973.1| putative replication-associated recombination protein A
[Selenomonas sp. FOBRC9]
Length = 444
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/409 (49%), Positives = 269/409 (65%), Gaps = 29/409 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + D VGQ+HLL +LR + S+++ S+IFWGPPG GKTTLA+ I
Sbjct: 13 HRPLAERVRPHTLEDFVGQEHLLGKGKILRRLIESDQITSMIFWGPPGVGKTTLAQII-- 70
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F+ SAV+ G+KD+R +++A + R +R ++FVDE+HRFNK+QQD+FLP
Sbjct: 71 AARTKAEFITFSAVSGGIKDIRTVMQEAERKR-SYGQRVIIFVDEIHRFNKAQQDAFLPF 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + LLSRCRV L LK D+ LL RA L +
Sbjct: 130 VEKGSIVLIGATTENPSFEINGALLSRCRVFVLQGLKTEDIRKLLLRAA-----ALPSGL 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG +++++ DA+ + +GDAR AL+ E+ + A +E DG
Sbjct: 185 GGQKIDISEDAVLAVARFANGDARSALSTFEMLILNA---------------EEKDG--- 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ VT ++ + K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 227 -IVTVTEENLAQCISRKSLLYDKTGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQAC ++G+PECNV L + V YL+LAPKS
Sbjct: 286 PLYVARRVTRFAAEDVGLADPRALEIAVAAYQACRYIGVPECNVHLTEAVIYLSLAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
++ A +A R + E VPL +RNAPTKLMKE+ YGKGY Y D
Sbjct: 346 AMEVAYLSAAADARTMLA--EPVPLVIRNAPTKLMKELDYGKGYQYAHD 392
>gi|259502469|ref|ZP_05745371.1| replication-associated recombination protein A [Lactobacillus antri
DSM 16041]
gi|259169612|gb|EEW54107.1| replication-associated recombination protein A [Lactobacillus antri
DSM 16041]
Length = 442
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 276/427 (64%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ + VGQ HL+ P+ +LR + +++L S+IFWGPPG GKTTLA+ I
Sbjct: 16 PLANRVRPASLGEFVGQQHLIGPHRVLRELIENDQLSSLIFWGPPGVGKTTLAEIIAQQT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
FV SAVTS +KD+R +++A + R + +RT+ F+DE+HRFNK+QQD+FLP +E
Sbjct: 76 KA--HFVTFSAVTSSIKDIRKIMQEAEQNR-EYGERTICFIDEIHRFNKAQQDAFLPFVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L D+E ++KRA++ +
Sbjct: 133 RGSIILIGATTENPSFEINSALLSRCKVFVLKALTTADLEEVIKRALNH-----PAAFPE 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V+ DAI + +GDARVALN LE++ + + DG
Sbjct: 188 LEVDCQPDAIHLIAQFANGDARVALNTLEMAVLNG----------------QRDGKK--- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + K L YD+ EEHYN+ISALHKSMR +D DAA+YW +RML+GGE PL
Sbjct: 229 VTITEQDLSQLINTKSLRYDKHDEEHYNIISALHKSMRNSDVDAAVYWCSRMLDGGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+GLAD ALN A++ +QAC FLGMPEC+V L +CV YLA APKS ++
Sbjct: 289 YIARRLVRFASEDIGLADTNALNVAINTFQACQFLGMPECDVHLTECVIYLACAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A A++VI+++ N VPL +RNAPTKLM +GYGKGY Y D + +PP
Sbjct: 349 YTARQRAKRVIKKT--GNLPVPLQIRNAPTKLMAGLGYGKGYQYAHDSKEKLTTMTTVPP 406
Query: 541 SLEGYKF 547
++ F
Sbjct: 407 EIKDEHF 413
>gi|295092387|emb|CBK78494.1| Recombination protein MgsA [Clostridium cf. saccharolyticum K10]
Length = 462
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/425 (48%), Positives = 276/425 (64%), Gaps = 31/425 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ RMRP ++ + GQ HLL LLR+ + +++ S+IFWGPPG GKTTLA I N
Sbjct: 13 YSPLASRMRPESLEEFFGQSHLLGEGMLLRNLIERDQVSSMIFWGPPGVGKTTLASIIAN 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ SAVTSG+K++R+ + A + R + K TV+FVDE+HRFNK+QQD+FLP
Sbjct: 73 RTNAG--FINFSAVTSGIKEIREVMAKAEEARHRGMK-TVVFVDEIHRFNKAQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRCRV L L ++ LLK A+ S+
Sbjct: 130 VERGSIILIGATTENPSFEINSALLSRCRVFVLKELSREELTALLKHALTS-----SRGY 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G +VE+ + ++ + GDAR ALN LE++ + D +
Sbjct: 185 GYLKVEIEEELLDMIARFAGGDARTALNVLEMAVTNGEI-----------HGDRT----- 228
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V+ + K+ K L YD+ GEEHYNLISALHKSMR +D DAA+YWL RMLE GE
Sbjct: 229 ---VVSREVIKQCIGKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLERMLEAGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRL+RFASED+G+AD AL+ AV+ YQACHFLGMPEC+V L V YL++APKS
Sbjct: 286 PLYVARRLIRFASEDIGMADSRALSLAVAAYQACHFLGMPECDVNLVHTVIYLSMAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S YRA AA+K +RE ++E VPL +RNAPTKLM E+ YG+GY Y + + + L
Sbjct: 346 SSYRACEAAKKDVREL--EDEPVPLVIRNAPTKLMAELHYGEGYQYAHSTAEKMTRMQCL 403
Query: 539 PPSLE 543
P SL+
Sbjct: 404 PDSLK 408
>gi|427405734|ref|ZP_18895939.1| hypothetical protein HMPREF9161_00299 [Selenomonas sp. F0473]
gi|425708575|gb|EKU71614.1| hypothetical protein HMPREF9161_00299 [Selenomonas sp. F0473]
Length = 448
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/429 (49%), Positives = 281/429 (65%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP ++D VGQ HLL +LR + S+++ S+IFWGPPG GKTTLA+ I
Sbjct: 13 HQPLAERVRPHTLDDFVGQKHLLGKRKILRRLIESDQITSMIFWGPPGVGKTTLAQII-- 70
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAVTSG+KD+R +++A + R + R ++FVDE+HRFNK+QQD+FLP
Sbjct: 71 AAHTKAKFITFSAVTSGIKDIRTVMQEAERRRAYGD-RIIVFVDEIHRFNKAQQDAFLPF 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + + LLSRCRV L L D++ LL+RA+ LS+ +
Sbjct: 130 VEKGSIVLIGATTENPSFEINSALLSRCRVFVLQGLALDDIKELLRRAMT-----LSRGL 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG ++ ++ + + + + +GDAR AL+ LE+ + A DE DG
Sbjct: 185 GGLKIRLSDEGLAAVAAFANGDARSALSTLEMLILNA---------------DEKDGEIS 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT ++ + K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 230 ----VTEENLAQCISRKSLLYDKTGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+ RFA+EDVGLADP AL AV+ YQACH++G+PECNV L + V YL+LAPKS
Sbjct: 286 PLYIARRVTRFAAEDVGLADPRALEIAVAAYQACHYIGVPECNVHLTEAVIYLSLAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
++ A AA R + + VPL +RNAPT+LMK++ YGKGY Y D L
Sbjct: 346 AMEAAYLAAAADARTMLA--DPVPLVIRNAPTRLMKDLDYGKGYQYAHDSEEHITNMQCL 403
Query: 539 PPSLEGYKF 547
P +L G +
Sbjct: 404 PDTLLGRAY 412
>gi|320528982|ref|ZP_08030074.1| recombination factor protein RarA [Selenomonas artemidis F0399]
gi|320138612|gb|EFW30502.1| recombination factor protein RarA [Selenomonas artemidis F0399]
Length = 447
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/409 (49%), Positives = 269/409 (65%), Gaps = 29/409 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + D VGQ+HLL +LR + S+++ S+IFWGPPG GKTTLA+ I
Sbjct: 16 HRPLAERVRPHTLEDFVGQEHLLGKGKILRRLIESDQITSMIFWGPPGVGKTTLAQII-- 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F+ SAV+ G+KD+R +++A + R +R ++FVDE+HRFNK+QQD+FLP
Sbjct: 74 AARTKAEFITFSAVSGGIKDIRTVMQEAERKR-SYGQRVIIFVDEIHRFNKAQQDAFLPF 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + LLSRCRV L LK D+ LL RA L +
Sbjct: 133 VEKGSIVLIGATTENPSFEINGALLSRCRVFVLQGLKTEDIRKLLLRAA-----ALPSGL 187
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG +++++ DA+ + +GDAR AL+ E+ + A +E DG
Sbjct: 188 GGQKIDISEDAVLAVARFANGDARSALSTFEMLILNA---------------EEKDG--- 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ VT ++ + K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 230 -IVTVTEENLAQCISRKSLLYDKTGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 288
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQAC ++G+PECNV L + V YL+LAPKS
Sbjct: 289 PLYVARRVTRFAAEDVGLADPRALEIAVAAYQACRYIGVPECNVHLTEAVIYLSLAPKSN 348
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
++ A +A R + E VPL +RNAPTKLMKE+ YGKGY Y D
Sbjct: 349 AMEVAYLSAAADARTMLA--EPVPLVIRNAPTKLMKELDYGKGYQYAHD 395
>gi|404329323|ref|ZP_10969771.1| recombination factor protein RarA [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 449
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/427 (48%), Positives = 274/427 (64%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP N+++ VGQ LL +LR+ + + S+IFWGPPG GKTTLA+ I
Sbjct: 18 PLAERVRPRNLDEFVGQRQLLGEGKVLRTLIDQDEAASLIFWGPPGVGKTTLARIIARKT 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAVTSG+KD+R + DA + R K RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 78 KAA--FINFSAVTSGIKDIRKVMADAEENR-KFGTRTIVFVDEIHRFNKAQQDAFLPYVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI IGATTENPSF + + LLSRC+V L L D+ LL++A+ D + G
Sbjct: 135 KGSITLIGATTENPSFEINSALLSRCKVFVLKQLTSEDIVRLLRQALQD-----PRGFGT 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ +++ + +GD RVALN LE++ + D S
Sbjct: 190 RKISIDRQSLDMIAGFSNGDGRVALNTLEMAVLNGT--------------KAGDRIS--- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V D ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARM+EGGE PL
Sbjct: 233 --VDPDTLEQITSQKSLLYDKHGEEHYNLISALHKSMRNSDVDAALYWLARMVEGGEDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASEDVG+AD A+ VS YQACHF+G+PEC V LA V YL+LAPKS ++
Sbjct: 291 YIARRLVRFASEDVGMADSRAVEITVSVYQACHFIGLPECGVHLAHAVTYLSLAPKSNAV 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A AA+ + S+ +E VP +RNAPT+LMKE+ YG+GY Y D D +P
Sbjct: 351 YTAYEAARDDAKNSI--DEPVPAVIRNAPTRLMKELHYGEGYQYAHDTKDKLTTMQTMPS 408
Query: 541 SLEGYKF 547
+L G+++
Sbjct: 409 NLIGHQY 415
>gi|152977760|ref|YP_001343389.1| recombination factor protein RarA [Actinobacillus succinogenes
130Z]
gi|150839483|gb|ABR73454.1| AAA ATPase central domain protein [Actinobacillus succinogenes
130Z]
Length = 439
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/427 (49%), Positives = 274/427 (64%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + GQ HLL +LR + ++++ S+IFWGPPG GKTTLA+ I NS
Sbjct: 15 PLAARLRPERLEEFAGQPHLLGEGKVLRRLIENDQISSMIFWGPPGVGKTTLAQIIANST 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ SAVTSG+KD+R ++ A + R + +T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 75 QAG--FIEFSAVTSGIKDIRAIMQQAEQNR-RYGAKTIVFVDEIHRFNKAQQDAFLPFVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSIV IGATTENPSF + LLSRC+V L PL+ D+ LL+RA+ K G
Sbjct: 132 KGSIVLIGATTENPSFEINGALLSRCKVFVLQPLETADIVKLLQRALTA-----PKGFGH 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV + D +E L + +GDAR AL+ LE+ + E + + +
Sbjct: 187 LRVNMQSDMLEVLANFANGDARSALSTLEMVVLNG--------------EHQGNAVT--- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + + K L YD+ GEEHYNLISALHKSMR +DADAA+YWLARMLE GE PL
Sbjct: 230 --VTEETLSQCLSRKTLLYDKKGEEHYNLISALHKSMRNSDADAAVYWLARMLEAGEDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFASEDVGLADP AL ++ YQACHF+GMPEC+V L Q V YL+LAPKS +I
Sbjct: 288 YVARRITRFASEDVGLADPRALEICIAAYQACHFIGMPECSVHLTQAVVYLSLAPKSNAI 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPP 540
A A+K + + VPLH+RNAPTKLMKE+ YGKGY + +D LP
Sbjct: 348 DMAYHQARKDALTQLA--DPVPLHIRNAPTKLMKELDYGKGYEFAHHYEDKLTTMQCLPD 405
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 406 SLLGREY 412
>gi|238926943|ref|ZP_04658703.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
gi|238885177|gb|EEQ48815.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
Length = 447
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/429 (48%), Positives = 278/429 (64%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++D VGQ+HLL +LR + S+R+ S+IFWGPPG GKTTLA+ I
Sbjct: 15 YQPLAERVRPRTLDDFVGQEHLLGQGKILRRLIESDRITSMIFWGPPGVGKTTLAQII-- 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F+ SAVTSG+K++R +++A + R+ +R V+FVDE+HRFNK+QQD+FLP
Sbjct: 73 AARTKAEFITFSAVTSGIKEIRTVMQEADRRRM-YGERIVVFVDEIHRFNKAQQDAFLPF 131
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + LLSRCRV L L D+E LL+ A+ + +
Sbjct: 132 VEKGSIVLIGATTENPSFEINNALLSRCRVFVLQGLTEADIERLLRHAI-----ATDREL 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ +++D I + + +GDAR AL+ LE+ + A DE DG
Sbjct: 187 SQMHIHLSNDGITAVAAFANGDARSALSTLEMLLLNA---------------DERDG--- 228
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT ++ + K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 229 -ELYVTEENLAQCITRKTLLYDKNGEEHYNLISALHKSMRNSDPDAAVYWLARMLESGED 287
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VRFA+EDVGLADP AL AV+ YQACH++G PECNV LA+ V YL+LAPKS
Sbjct: 288 PLYVARRVVRFAAEDVGLADPRALELAVAVYQACHYIGYPECNVHLAEAVIYLSLAPKSN 347
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
++ A A R + E VPL +RNAPT+LMK++ YGKGY Y D + L
Sbjct: 348 AMETAYLTAAADARTMLA--EPVPLVIRNAPTRLMKDLDYGKGYQYAHDAEEHITNMQCL 405
Query: 539 PPSLEGYKF 547
P SL G +
Sbjct: 406 PDSLVGRTY 414
>gi|325262409|ref|ZP_08129146.1| ATPase, AAA family [Clostridium sp. D5]
gi|324032241|gb|EGB93519.1| ATPase, AAA family [Clostridium sp. D5]
Length = 439
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/408 (50%), Positives = 261/408 (63%), Gaps = 29/408 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP + D VGQ+HLL +LR + +++ S+IFWGPPG GKTTLA I
Sbjct: 17 APLASRLRPDTLKDFVGQEHLLGKGKVLRQLIERDQISSMIFWGPPGVGKTTLASIIAGQ 76
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++++ + A + R + RTVLFVDE+HRFNK+QQD+FLP +
Sbjct: 77 TKAD--FINFSAVTSGIKEIKEVMNQAEQSR-RMGIRTVLFVDEIHRFNKAQQDAFLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + LLSRCRV L L+ D+ LL A+ + G
Sbjct: 134 EKGSIILIGATTENPSFEVNAALLSRCRVFVLKALEEKDLVKLLSHALAN-----PSGFG 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G V + IE + + +GDAR ALN LE++ + + S
Sbjct: 189 GQNVHITPTQIEAIAAFANGDARTALNTLEMAVLNGEI-------------------SAA 229
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT + ++ K L YD+ GEEHYNLISALHKSMR +D DAAIYW+ RMLEGGE P
Sbjct: 230 GITVTNEGLEQCISKKSLLYDKNGEEHYNLISALHKSMRNSDPDAAIYWMMRMLEGGENP 289
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRLVRFASED+G+AD AL V+ YQACHFLGMPEC+V L V YL+LAPKS +
Sbjct: 290 LYIARRLVRFASEDIGMADSHALQVTVAAYQACHFLGMPECDVHLTHAVTYLSLAPKSNA 349
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
+Y A A +K +R + E VPL +RNAPT+LMKE+ YGKGY Y D
Sbjct: 350 LYTACEACKKDVRNM--RAEPVPLQIRNAPTRLMKELEYGKGYEYAHD 395
>gi|452203976|ref|YP_007484109.1| AAA family ATPase [Dehalococcoides mccartyi DCMB5]
gi|452111035|gb|AGG06767.1| AAA family ATPase [Dehalococcoides mccartyi DCMB5]
Length = 452
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/429 (49%), Positives = 284/429 (66%), Gaps = 29/429 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+PL+ RMRP + + VGQ HL+ LR ++ S+++PS+IFWGPPG+GKTTLA I +
Sbjct: 15 QSPLAARMRPETLAEFVGQSHLIGEGRALRLSLESDKIPSLIFWGPPGSGKTTLANIIAH 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S+ F LSAV++GV D+R VE+AR+ ++RT+LF+DE+HRFNKSQQD+ LP
Sbjct: 75 SLDA--HFSALSAVSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++V IGATTENPSF + + LLSR +V LN L ++ ++LKR+++ NGL
Sbjct: 133 VEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNSLSEKEISVILKRSLEG-ENGL---- 187
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + A + + S GDAR+ALN LE++ +T +P K DG
Sbjct: 188 GNYHARLLEKAEKHISSFAQGDARIALNILELAVMTT---LPDK-----------DGWR- 232
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAAIYWL RMLE GE
Sbjct: 233 ---VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAIYWLGRMLEAGED 289
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA APKS
Sbjct: 290 PLYIARRVIRFATEDVGLADPQGLVIAMAAQQAVHFLGMPEGKLALAEAVIYLAGAPKSN 349
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S+Y A QK I + + VPLHLRNAPT LMK++GYGK Y Y D + KQ L
Sbjct: 350 SVYVAYTNVQKEIARNPQAD--VPLHLRNAPTGLMKDLGYGKDYKYAHDYQNHFVKQQNL 407
Query: 539 PPSLEGYKF 547
P ++ ++F
Sbjct: 408 PEVIKDHRF 416
>gi|307212720|gb|EFN88396.1| ATPase WRNIP1 [Harpegnathos saltator]
Length = 562
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/458 (46%), Positives = 285/458 (62%), Gaps = 47/458 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV- 179
H PL+E+MRP ++ + +GQ+H+L P+++L + +P++I WGPPG GKT+LA I
Sbjct: 115 HIPLAEQMRPTSLLNFIGQEHILGPHTMLSELLQKGEIPNMILWGPPGCGKTSLANVIAH 174
Query: 180 ---NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
N + ++V LSA +GV++V++ + A VK +RT++F+DE+HRFNK QQD
Sbjct: 175 RCKNDASHKLRYVKLSAAMAGVQEVKEVISVAAN-HVKYAQRTIVFMDEIHRFNKMQQDV 233
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN-- 294
FLP +E GSI IGATTENPSF L + LLSRCRV L+ L ++ +L+RAV +N
Sbjct: 234 FLPHVESGSITLIGATTENPSFSLNSALLSRCRVTVLHKLSISNLVSILRRAVTSLNGVT 293
Query: 295 ---------GLSKSVGGTRVE---------------VNHDAIEFLCSNCDGDARVALNAL 330
G + T +E V+ +E+L CDGDAR+AL L
Sbjct: 294 YLPEKDETMGNNARKESTSMEEGRILGEPSSDMKFIVDGPTLEWLAGTCDGDARIALGGL 353
Query: 331 EISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYN 390
E+ AVR V QED SP A++TL D KE+ + H+ YD+ G++HY+
Sbjct: 354 EM-----AVRSKVPN-----QED-----SPEPAIITLGDVKESLKKTHMLYDKKGDQHYD 398
Query: 391 LISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSC 450
+ISALHKS+R +D +A++YWL RM+ GGE P+YIARRLVR ASEDVGLADP AL AV
Sbjct: 399 MISALHKSVRASDENASLYWLTRMISGGEDPVYIARRLVRMASEDVGLADPKALGIAVHT 458
Query: 451 YQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNA 510
C +GMPEC+V+LAQC YLA APKS + AL AAQ+ + E G GVPLHLRNA
Sbjct: 459 MHGCKMIGMPECDVLLAQCTTYLARAPKSRLMEDALRAAQRAVAEHKGPQPGVPLHLRNA 518
Query: 511 PTKLMKEIGYGKGYIYTPDDPSAKQSFLPPSLEGYKFL 548
PTKLMK++GYGKGY + S ++LP LE F
Sbjct: 519 PTKLMKDLGYGKGYNMRYKEDSG-LNYLPEGLEDLDFF 555
>gi|357236709|ref|ZP_09124052.1| recombination factor protein RarA [Streptococcus criceti HS-6]
gi|356884691|gb|EHI74891.1| recombination factor protein RarA [Streptococcus criceti HS-6]
Length = 445
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/403 (49%), Positives = 274/403 (67%), Gaps = 29/403 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP ++D +GQ HL+ LR + S+++ S+IFWGPPG GKTTLA+ I S
Sbjct: 15 APLASRVRPKTLDDFIGQTHLVGEGKFLRQMIDSDQIASMIFWGPPGVGKTTLAEIIAKS 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+F+ SAV +G+K++R + +A++LR + +RT++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--KSRFITFSAVMNGIKEIRQIMAEAQELR-QLGERTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + LLSRCRV LN L D+ LL++ + +
Sbjct: 132 ERGSIILIGATTENPSFEVNAALLSRCRVFVLNQLGQEDLLGLLEKVLAS-----PLAFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V V+ +A+ + +GDAR ALN LE+ + + + E +V DE
Sbjct: 187 NISVSVSQEALRRMAIYANGDARSALNTLEMVVLNSDL-----EGNKVTVSDE------- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L TL K A+ YD+ GEEHYN+ISALHKSMR +DAD+AIYWL RM+EGGE P
Sbjct: 235 -ILDTLLGNKTAY------YDKDGEEHYNIISALHKSMRNSDADSAIYWLGRMIEGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YIARRL+RFASED+GLAD ALN A++ +QAC ++G+PEC+V L QCV YL+LAPKS +
Sbjct: 288 IYIARRLIRFASEDIGLADNGALNLAINTFQACRYIGLPECDVHLTQCVIYLSLAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
+Y+A A QK I++++ Q VPLHLRN TKLMKE+GYGKGY
Sbjct: 348 VYKARQAVQKDIKQTIDQ--PVPLHLRNGTTKLMKELGYGKGY 388
>gi|402832911|ref|ZP_10881537.1| replication-associated recombination protein A [Selenomonas sp.
CM52]
gi|402281851|gb|EJU30470.1| replication-associated recombination protein A [Selenomonas sp.
CM52]
Length = 440
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/428 (49%), Positives = 270/428 (63%), Gaps = 39/428 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + D VGQ HL+ +LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 14 PLAARMRPKRLADYVGQQHLVGKGKMLRKLIAEDKIFSMIFWGPPGVGKTTLARIIARET 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+K++R +++A K +RT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 74 KA--RFIDFSAVTSGIKEIRTVMQEAEK-NTAYGERTILFVDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRCRV L L+ D+ LL+RA+ + G
Sbjct: 131 RGSIILIGATTENPSFEINSALLSRCRVFVLKALQKEDILGLLRRAL-----AAPEGFGE 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+VE+ D +E L +GDAR AL+ LEI + V E D
Sbjct: 186 QKVEIADDLLEALAVFANGDARTALSTLEIVVLNGEV--------------EKDAIR--- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + ++ + K L YD+ GEEHYNLISALHKSMR +DADA++YWLARMLE GE PL
Sbjct: 229 --VTRETVEQCLEKKSLLYDKKGEEHYNLISALHKSMRNSDADASVYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS--- 479
YIARR+VRFASEDVGLADP AL AV+ YQACHF+GMPEC+V L + Y+ALAPKS
Sbjct: 287 YIARRIVRFASEDVGLADPRALELAVAAYQACHFIGMPECSVHLTEAAVYMALAPKSNAM 346
Query: 480 -ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQS 536
++ +A A K + E VPL +RNA T+LMK+ GYGKGY Y + D
Sbjct: 347 EVAYLKAKADATKRLAEP------VPLVIRNAVTRLMKDEGYGKGYQYAHNTKDKLTNMQ 400
Query: 537 FLPPSLEG 544
LP L G
Sbjct: 401 CLPDDLLG 408
>gi|357638038|ref|ZP_09135911.1| recombination factor protein RarA [Streptococcus urinalis 2285-97]
gi|418417836|ref|ZP_12991029.1| hypothetical protein HMPREF9318_01777 [Streptococcus urinalis
FB127-CNA-2]
gi|357586492|gb|EHJ55900.1| recombination factor protein RarA [Streptococcus urinalis 2285-97]
gi|410870320|gb|EKS18278.1| hypothetical protein HMPREF9318_01777 [Streptococcus urinalis
FB127-CNA-2]
Length = 448
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/455 (44%), Positives = 286/455 (62%), Gaps = 50/455 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+N+ GQ HL+ +LR + ++ S+IFWGPPG GKTTLA I N
Sbjct: 14 PLAARVRPRNLNEYFGQSHLIGQGKVLRKMIKQGQMSSMIFWGPPGVGKTTLANIIANQT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+K++R +++A + R + +RT++F+DE+HRFNK+QQD+FLP +E
Sbjct: 74 QA--KFLTFSAVTSGIKEIRKIMQEAEENR-QYGERTLVFIDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ +GATTENPSF + LLSRC+V LN L ++ LL + D ++
Sbjct: 131 KGSIILVGATTENPSFEVNGALLSRCKVFVLNQLTEDEMVDLLSHVLRD-----DRAFPN 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + ++ + DGDAR ALN LE++ + + + DG
Sbjct: 186 QSISISRENLKKIALYADGDARTALNTLEMAVLYSEIH---------------DGK---- 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+++ D ++ + K L YD+ GEEHYN+ISALHKSMR +D DAAIYW+ RML+GGE PL
Sbjct: 227 VIISEDIMEDLLEKKMLLYDKTGEEHYNIISALHKSMRNSDPDAAIYWMIRMLDGGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+RFASED+GLAD AL+ YQAC FLG+PEC++ L Q V YL+LAPKS ++
Sbjct: 287 YIARRLIRFASEDIGLADSRALSLTTEVYQACQFLGLPECDIHLTQAVIYLSLAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY------------IYTPDD 530
Y+A AA K ++ + QNE VPLHLRNA T LMKE+GYGKGY + T D
Sbjct: 347 YKARLAAAKDVKST--QNEPVPLHLRNAITNLMKEVGYGKGYQLAHFYQDKLTDMQTMPD 404
Query: 531 PSAKQSFLPPSLEGY--------KFL-DWPKSNTT 556
++ P+ EG+ K+L +W ++TT
Sbjct: 405 NLVGHTYYKPTEEGHESRFKERLKYLKEWKANHTT 439
>gi|73748992|ref|YP_308231.1| recombination factor protein RarA [Dehalococcoides sp. CBDB1]
gi|73660708|emb|CAI83315.1| ATPase, AAA family [Dehalococcoides sp. CBDB1]
Length = 457
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/429 (49%), Positives = 285/429 (66%), Gaps = 29/429 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+PL+ RMRP + + VGQ HL+ LR ++ S+++PS+IFWGPPG+GKTTLA I +
Sbjct: 20 QSPLAARMRPETLAEFVGQSHLIGEGRALRLSLESDKIPSLIFWGPPGSGKTTLANIIAH 79
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S+ F LSAV++GV D+R VE+AR+ ++RT+LF+DE+HRFNKSQQD+ LP
Sbjct: 80 SLDA--HFSALSAVSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPY 137
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++V IGATTENPSF + + LLSR +V LN L ++ ++LKR+++ NGL
Sbjct: 138 VEDGTVVLIGATTENPSFEVNSALLSRAQVYVLNSLSEKEISVILKRSLEG-ENGL---- 192
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + +A + + S GDAR+ALN LE++ +T +P K DG
Sbjct: 193 GNYHARLLEEAEKHISSFAQGDARIALNILELAVMTT---LPDK-----------DGWR- 237
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAAIYWL RMLE GE
Sbjct: 238 ---VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAIYWLGRMLEVGED 294
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA APKS
Sbjct: 295 PLYIARRVIRFATEDVGLADPQGLVIAMAAQQAVHFLGMPEGKLALAEAVIYLAGAPKSN 354
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S+Y A QK I + + VPLHLRNAPT LMK++GYGK Y Y D + KQ L
Sbjct: 355 SVYVAYTNVQKEIARNPQAD--VPLHLRNAPTGLMKDLGYGKDYKYAHDYQNHFVKQQNL 412
Query: 539 PPSLEGYKF 547
P ++ ++F
Sbjct: 413 PEVIKDHRF 421
>gi|340708626|ref|XP_003392923.1| PREDICTED: ATPase WRNIP1-like [Bombus terrestris]
Length = 536
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/458 (45%), Positives = 282/458 (61%), Gaps = 26/458 (5%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
D + T H PL+ERMRP ++ VGQ H+L P+++L + + +P+II WGPPG
Sbjct: 94 DKEVTKLFRNDHIPLAERMRPTTLSGYVGQLHVLGPSTVLYQLLNKSEIPNIILWGPPGC 153
Query: 170 GKTTLAKAIV----NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225
GKT+LA I N ++V LSA +GV +V++ + A +K N+RTV+F+DE
Sbjct: 154 GKTSLANVIAYICKNKSNGKMRYVKLSAAMAGVNEVKEVITIASN-ELKFNRRTVIFMDE 212
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+HRFNK+QQD FLP +E G I IGATTENPSF L + LLSRCRV+ L L ++ +L
Sbjct: 213 IHRFNKTQQDVFLPHVESGIITLIGATTENPSFSLNSALLSRCRVIVLEKLNTSNLMSIL 272
Query: 286 KRAVDDV-------NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAA 338
RAV + N L + + ++ IE+L CDGDAR+AL+ LE+ A
Sbjct: 273 NRAVSSLEGTVYSSNKKLESANQIPKFIIDEPTIEWLAETCDGDARIALSGLEL-----A 327
Query: 339 VRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKS 398
V+ ++ +E Q +TL + KE + H+ YD+ G++HY++ISALHKS
Sbjct: 328 VQYKIQSNEEFLQNGP--------VTITLANIKEGLKKTHMLYDKRGDQHYDMISALHKS 379
Query: 399 MRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLG 458
+R +D +A++YWL RM+ GGE P+YIARRLVR A ED+GL DP AL AV C +G
Sbjct: 380 VRASDENASLYWLTRMILGGEDPVYIARRLVRMACEDIGLEDPKALGIAVHTMHGCKMIG 439
Query: 459 MPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEI 518
MPEC+V+LAQC YLA APKS + AL AAQ+VI E G GVPL+LRNAPTKLMK +
Sbjct: 440 MPECDVLLAQCTTYLARAPKSRLMEDALRAAQRVIAEHKGPQPGVPLYLRNAPTKLMKNL 499
Query: 519 GYGKGYIYTPDDPSAKQSFLPPSLEGYKFLDWPKSNTT 556
GY KGY D S ++LP LE F D+ K+ T
Sbjct: 500 GYSKGYNMKHKDESG-MNYLPEGLENVNFFDYHKNYMT 536
>gi|147669758|ref|YP_001214576.1| recombination factor protein RarA [Dehalococcoides sp. BAV1]
gi|146270706|gb|ABQ17698.1| AAA ATPase, central domain protein [Dehalococcoides sp. BAV1]
Length = 457
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/429 (49%), Positives = 284/429 (66%), Gaps = 29/429 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+PL+ RMRP + + VGQ HL+ LR ++ S+++PS+IFWGPPG+GKTTLA I +
Sbjct: 20 QSPLAARMRPETLAEFVGQSHLIGEGRALRLSLESDKIPSLIFWGPPGSGKTTLANIIAH 79
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S+ F LSAV++GV D+R VE+AR+ ++RT+LF+DE+HRFNKSQQD+ LP
Sbjct: 80 SLDA--HFSALSAVSAGVADLRRVVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPY 137
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++V IGATTENPSF + + LLSR +V LN L ++ ++LKR+++ NGL
Sbjct: 138 VEDGTVVLIGATTENPSFEVNSALLSRVQVYVLNSLSEKELSVILKRSLEG-ENGL---- 192
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + +A + + S GDAR+ALN LE++ +T +P K DG
Sbjct: 193 GNYHARLLEEAEKHISSFAQGDARIALNILELAVMTT---LPDK-----------DGWR- 237
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V L ++A Q K L YD++GE+HY+LISALHK+MRG+D DAAIYWL RMLE GE
Sbjct: 238 ---VVGLPQVEDAAQKKSLRYDKSGEQHYDLISALHKTMRGSDPDAAIYWLGRMLEAGED 294
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR++RFA+EDVGLADP L A++ QA HFLGMPE + LA+ V YLA APKS
Sbjct: 295 PLYIARRVIRFATEDVGLADPQGLVIAMAAQQAVHFLGMPEGKLALAEAVIYLAGAPKSN 354
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S+Y A QK I + + VPLHLRNAPT LMK++GYGK Y Y D + KQ L
Sbjct: 355 SVYVAYTNVQKEIARNPQAD--VPLHLRNAPTGLMKDLGYGKDYKYAHDYQNHFVKQQNL 412
Query: 539 PPSLEGYKF 547
P ++ +F
Sbjct: 413 PEVIKDQRF 421
>gi|339634665|ref|YP_004726306.1| recombination factor protein RarA [Weissella koreensis KACC 15510]
gi|338854461|gb|AEJ23627.1| recombination factor protein RarA [Weissella koreensis KACC 15510]
Length = 440
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/438 (46%), Positives = 293/438 (66%), Gaps = 33/438 (7%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
S A + PL+ R+RP N++D VGQ HLL P+ +LR + ++++ S+IFWGPPG GKT
Sbjct: 5 SLFANQFENMPLANRVRPRNLDDFVGQGHLLGPDKILREIIENDQVSSMIFWGPPGVGKT 64
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
TLA+ I ++ F+ SAV S + +++ ++ A +L + ++T++FVDE+HRFNK+
Sbjct: 65 TLAEII--ALKTQSNFLRFSAVDSSISNIKKIMKQA-ELDREIGQKTMIFVDEIHRFNKA 121
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQD+FLP +E GSI IGATTENPSF + + LLSRC+V L L+ D+ +L+K AV V
Sbjct: 122 QQDAFLPYVERGSITLIGATTENPSFEINSALLSRCKVFILKELQQEDIVVLIKNAV--V 179
Query: 293 N-NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
N NG + V +++ D + + + DGDAR+ALN LE++ +
Sbjct: 180 NPNGYGEQV----IKIGEDEMRTIANFSDGDARMALNTLEMAVLNG-------------- 221
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
D+++ V +++D+ + K + YD+ GEEHYN+ISALHKSMR +D DAAIYWL
Sbjct: 222 -DKNEN----VITISMDNLSQLITKKFVLYDKNGEEHYNIISALHKSMRNSDVDAAIYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
+RMLEGGE P+YIARRL+ FASED+GLAD ALN AV+ +QAC F+GMPEC+V L + V
Sbjct: 277 SRMLEGGEDPIYIARRLLIFASEDIGLADTNALNIAVNVFQACQFIGMPECDVHLVEAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY--IYTPD 529
YL+LAPKS ++Y+A +A K ++++ +NE VP+ +RNAPTK MK++GY KGY +
Sbjct: 337 YLSLAPKSNAVYKARLSAAKDVKQT--KNEPVPVQIRNAPTKFMKDLGYCKGYELAHYAK 394
Query: 530 DPSAKQSFLPPSLEGYKF 547
D +P SLEG+++
Sbjct: 395 DKLTTMKTMPDSLEGHEY 412
>gi|355672875|ref|ZP_09058596.1| hypothetical protein HMPREF9469_01633 [Clostridium citroniae
WAL-17108]
gi|354814902|gb|EHE99500.1| hypothetical protein HMPREF9469_01633 [Clostridium citroniae
WAL-17108]
Length = 439
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/430 (47%), Positives = 277/430 (64%), Gaps = 37/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP +++ VGQ+HLL LLR + +++PS+IFWGPPG GKTTLA I +
Sbjct: 16 PLASRLRPEDLDGFVGQEHLLGKGKLLRQLIEQDKIPSMIFWGPPGVGKTTLAGIIAHKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAV---EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+F+ SAVTSG+K+++D + E++R++ +K TV+FVDE+HRFNK+QQD+FLP
Sbjct: 76 HA--QFINFSAVTSGIKEIKDVMAQAENSRRMGIK----TVVFVDEIHRFNKAQQDAFLP 129
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E GSI+ IGATTENPSF + LLSRCRV L L D+ LLK A+ K
Sbjct: 130 YVEKGSIILIGATTENPSFEINGALLSRCRVFVLQALTQEDLTNLLKIAIRS-----EKG 184
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+G V+++ ++ + GDAR ALN LE++ + +D +
Sbjct: 185 LGYLNVDIDDHMLDMIAMFAAGDARTALNTLEMAVTNGEIG--------------ADKTT 230
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
VT++ K+ K YD+ GEEHYN+ISALHKSMR D DAA+YWLARMLE GE
Sbjct: 231 -----VTMEVLKQCIGKKSFLYDKKGEEHYNIISALHKSMRNTDPDAAVYWLARMLEAGE 285
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRL+RFASED+G+AD AL AV+ Y+ACHFLGMPECNV L+ V YL++APKS
Sbjct: 286 DPLYVARRLIRFASEDIGMADSHALPLAVAAYEACHFLGMPECNVHLSHAVIYLSMAPKS 345
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y A AA++ + ++ E VPL++RNAPTKLM+E+ YG GY+Y D A+
Sbjct: 346 NSAYVAYNAAKEDAQATMA--ETVPLNIRNAPTKLMEELHYGSGYVYAHDTEQKVARMQC 403
Query: 538 LPPSLEGYKF 547
LP L G +
Sbjct: 404 LPDGLLGRTY 413
>gi|301112162|ref|XP_002905160.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
gi|262095490|gb|EEY53542.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
Length = 499
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/436 (48%), Positives = 278/436 (63%), Gaps = 32/436 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ND+VGQ+ LL P SLL + + ++R+P++I WGPPG GKTTLA I S
Sbjct: 85 PLAERMRPTDLNDLVGQEELLGPGSLLSTLIEADRVPNMILWGPPGCGKTTLAHVI--SK 142
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ LS TS D++DAV+ AR R +RT++FVDE+HRFNK QQD FLP +E
Sbjct: 143 KTGCKFISLSGATSKAGDMKDAVDRARGERKMFRRRTIVFVDEIHRFNKIQQDFFLPPVE 202
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I IGATTENPSF + LLSRCRV +L P +E +L+RA+ + +S
Sbjct: 203 DGTITLIGATTENPSFEVNNALLSRCRVYSLKKHTPESIERILRRALT-AGDQMS----- 256
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
E +AI++L + C GDAR ALN LE++ TA P+ K V +
Sbjct: 257 --FEAEDEAIKYLTTQCAGDARAALNCLEMAIQTA----PIDPDKRVLR----------- 299
Query: 363 ALVTLDDAKEAFQCKH-LAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V+ + F + L YDR + HY++ISALHKS+RG+D +A +YWLARMLEGGE P
Sbjct: 300 --VSAIHVQHCFAHRQTLFYDRNADMHYDVISALHKSIRGSDENATLYWLARMLEGGENP 357
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+R ASEDVGLA P L AVS YQA HF GMPEC+V+LA LA APKSI
Sbjct: 358 LYVARRLIRVASEDVGLAAPELLPLAVSAYQAAHFTGMPECDVVLAHVATMLARAPKSIE 417
Query: 482 IYRALGAAQKVIRE-SVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK---QSF 537
+Y A A++ I + G VP+H+RNAPTKLMKE+GY KGY Y P + + Q++
Sbjct: 418 VYAAYKRAKQSIHDWGKGALPDVPMHIRNAPTKLMKEMGYAKGYKYNPHYTAEELKDQTY 477
Query: 538 LPPSLEGYKFLDWPKS 553
LP + F + K+
Sbjct: 478 LPDEMVDTNFFEDAKT 493
>gi|227530160|ref|ZP_03960209.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
gi|227349913|gb|EEJ40204.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
Length = 441
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/429 (46%), Positives = 276/429 (64%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP N+ + +GQ L+ +LR + +++ S+I WGPPG GKTTLA+ I
Sbjct: 13 NTPLANRIRPRNLEEFMGQQQLIGNGKVLRDLIEHDQVSSLILWGPPGVGKTTLAEIIAQ 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ SAVTS ++D+R +E+A K R + +RT+ F+DE+HRFNK+QQD+FLP
Sbjct: 73 QT--KSHFITFSAVTSSIRDIRKIMEEAEKNR-EFGERTICFIDEIHRFNKAQQDAFLPF 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L L +D+ +LKRA++ +
Sbjct: 130 VERGSIILIGATTENPSFEINSALLSRCKVFVLKSLTVNDIIAILKRAINHPD-----GF 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++ N D + + +GDARVALN LE++ + A
Sbjct: 185 PGIKISYNDDVLTMIAEFANGDARVALNTLEMAVLNA-------------------NHHN 225
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ +T+D K+ K L YD+ GEEHYN+ISALHKSMR +D DAAIYW +RM++GGE
Sbjct: 226 HQVNLTIDSLKQLINTKSLRYDQHGEEHYNVISALHKSMRNSDVDAAIYWCSRMIDGGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASED+GLAD ALN A++ +QAC FLG+PEC+V L +CV YL+LAPKS
Sbjct: 286 PLYIARRLVRFASEDIGLADTNALNVAINTFQACKFLGVPECDVHLTECVIYLSLAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
++Y+A A+KVI+++ N VPL +RNAPTKLMK++ YG Y Y D D +
Sbjct: 346 AVYKARMTAKKVIKKT--GNLPVPLQIRNAPTKLMKDLHYGAHYQYAHDTKDKLTSMKTM 403
Query: 539 PPSLEGYKF 547
PP L +F
Sbjct: 404 PPELAEQQF 412
>gi|237733075|ref|ZP_04563556.1| ATPase [Mollicutes bacterium D7]
gi|229383877|gb|EEO33968.1| ATPase [Coprobacillus sp. D7]
Length = 440
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/440 (45%), Positives = 282/440 (64%), Gaps = 38/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + VGQ HL+ P +L + S+ +PS++FWGPPG GKTTLA+ I N
Sbjct: 15 PLANRLRPTTLTEYVGQRHLIGPGKILYQLINSDVVPSMVFWGPPGVGKTTLARIIANQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+KD+R ++ A++++ ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 75 KA--KFINFSAVTSGIKDIRAVMKQAQEVQ-DLGEKTIVFVDEIHRFNKAQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L D+ LL A+ K
Sbjct: 132 QGSIILIGATTENPSFEINSALLSRCKVFVLKALTTDDLFGLLHYALIS-----PKGFKD 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV---RVPVKEVKEVEQEDESDGCS 359
V ++ D + + +GDARVALN LE++ + A+ R+ V + + +EQ
Sbjct: 187 QNVMIDDDLLYMIAGFSNGDARVALNTLEMAVLNGAITHDRIVVDK-ETIEQ-------- 237
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
K L YD+ GEEHYN+ISALHKSMR +D DA+IYW++RM+E GE
Sbjct: 238 -------------CINQKSLLYDKKGEEHYNIISALHKSMRNSDIDASIYWMSRMIEAGE 284
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRL+RFASED+G+AD AL AV+ YQACH+ GMPECNV LA CV Y+ALAPKS
Sbjct: 285 DPLYVARRLIRFASEDIGMADSRALEIAVATYQACHYNGMPECNVNLAHCVTYMALAPKS 344
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSF 537
++Y+A A+ ++ + VPL +RNAPTKLMKE+ YGKGY Y DD
Sbjct: 345 NALYKAYERAKHDALNTIA--DPVPLQIRNAPTKLMKELNYGKGYQYAHDYDDKITNMQC 402
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP +++ +++ +P + T+
Sbjct: 403 LPDNIKDHRYY-FPTNQGTE 421
>gi|116748300|ref|YP_844987.1| recombination factor protein RarA [Syntrophobacter fumaroxidans
MPOB]
gi|116697364|gb|ABK16552.1| Recombination protein MgsA [Syntrophobacter fumaroxidans MPOB]
Length = 451
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/431 (47%), Positives = 278/431 (64%), Gaps = 32/431 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ERMRP ++++ VGQDHLL +L + S R S + WGPPG+GKTTLA I
Sbjct: 18 NAPLAERMRPGSLDEFVGQDHLLGRGKILDRVIRSRRFQSFVLWGPPGSGKTTLAAII-- 75
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ + LSAV +G +++R+AV +A+++ K RT LF+DE+HR NK+QQD+ LP
Sbjct: 76 AAQTQTHMIHLSAVMAGTREIREAVTEAKQVWAKQKLRTWLFMDEIHRLNKAQQDTLLPH 135
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IE+G+++ +GATTENPSF +I PLLSR RVL LN L ++ ++ RA++D + GL
Sbjct: 136 IENGTLLLLGATTENPSFEIIRPLLSRARVLVLNHLSDAELGNIVHRALEDRDRGL---- 191
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + DA FL S GDAR+ALNALE++ +T D +
Sbjct: 192 GNFPSRLTEDAEAFLLSAAGGDARIALNALEVAVLTTP-------------PDPQN---- 234
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ LV L+ +EA Q K + YD+ GEEH+NLISALHKS+RG+D DAA+YWLARML+ GE+
Sbjct: 235 -IRLVDLNAVQEALQRKAVHYDKGGEEHFNLISALHKSVRGSDPDAALYWLARMLDAGEE 293
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR +R ASED+GLADP AL +AVS +Q LG PE + LAQ + YL LAPKS
Sbjct: 294 PLYLARRAIRMASEDIGLADPFALVEAVSAFQTYQVLGSPEGELALAQAIVYLCLAPKSN 353
Query: 481 SIYRALGAAQKVIRESVGQNEGVPL--HLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQS 536
IY A G A RE G+ P+ H+RNAPT+L+K +GYG+ Y Y DDP ++
Sbjct: 354 KIYEAFGNA----RELAGKTGSAPVPPHIRNAPTQLLKTLGYGRNYRYPHDDPEGWVAET 409
Query: 537 FLPPSLEGYKF 547
+ P +L G F
Sbjct: 410 YFPQNLAGTVF 420
>gi|254556460|ref|YP_003062877.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
gi|254045387|gb|ACT62180.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
Length = 449
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/439 (46%), Positives = 276/439 (62%), Gaps = 32/439 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RPV + D GQ+HLL P LLR + ++LPS+IFWGPPG GKTTLA+ I
Sbjct: 15 SPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAEDQLPSLIFWGPPGVGKTTLAEIIAQQ 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++R +++A R ++T++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--QSHFITFSAVTSGIKEIRQIMDEAEANR-DFGEKTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI IGATTENPSF + LLSRC+VL L L P+ +E +L+ A+ + K
Sbjct: 132 ERGSITLIGATTENPSFEINAALLSRCKVLVLKALTPNALEAVLQGALQN-----PKGFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + D + + +GDAR+ALN LE++ + + DG
Sbjct: 187 DLEITMQPDTLRLIAEFANGDARMALNTLEMAVLNG----------------DRDGKH-- 228
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + K L YD+ GEEHYN+ISALHKSMR +D DAAIYWL RML GGE P
Sbjct: 229 -VTITTAGLSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVDAAIYWLMRMLAGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+GLAD AL V+ +QAC +GMPEC+V L + V YLALAPKS +
Sbjct: 288 LYIARRLIRFASEDIGLADRQALPLTVAVFQACQLIGMPECDVNLTEAVTYLALAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+Y A AAQ I+ + N VPL +RNAPTKLMK++GYG Y Y D + + +P
Sbjct: 348 LYAAKSAAQADIKAT--GNLPVPLQIRNAPTKLMKDLGYGSDYKYAHDTAAKLTTMTTMP 405
Query: 540 PSLEGYKFLDWPKSNTTDK 558
P L+ +++ + P S +K
Sbjct: 406 PELKQHRYYE-PTSQGQEK 423
>gi|429736180|ref|ZP_19270097.1| recombination factor protein RarA [Selenomonas sp. oral taxon 138
str. F0429]
gi|429156086|gb|EKX98727.1| recombination factor protein RarA [Selenomonas sp. oral taxon 138
str. F0429]
Length = 446
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/466 (46%), Positives = 287/466 (61%), Gaps = 54/466 (11%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
H + PL+ERMRP + D VGQ+HLL +LR + S+ + S+IFWGPPG GKTTLA+
Sbjct: 10 HAAYQPLAERMRPQTLEDFVGQEHLLGKGKMLRRLIESDHIASMIFWGPPGVGKTTLARI 69
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I + KF+ SAVTSG+KD+R +++A + R+ +R ++FVDE+HRFNK+QQD+F
Sbjct: 70 I--AARTQAKFINFSAVTSGIKDIRTVMQEADRRRI-YGERIIVFVDEIHRFNKAQQDAF 126
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSIV IGATTENPSF + + LLSRCRV L L D+ LL+ A+
Sbjct: 127 LPFVEKGSIVLIGATTENPSFEINSALLSRCRVFVLQGLTTDDIARLLRHAL-----SAE 181
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
+ + V ++ + + + + +GDAR AL+ LE+ + A DE DG
Sbjct: 182 RGLRDLHVHLSEEGLAAVAAFANGDARSALSTLEMLVMNA---------------DERDG 226
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
VT ++ + K L YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE
Sbjct: 227 ----EIYVTEENLAQCISRKSLLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEA 282
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L + V YL+LAP
Sbjct: 283 GEDPLYVARRVTRFAAEDVGLADPRALEIAVAAYQACHYIGFPECNVHLTEAVIYLSLAP 342
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-------- 529
KS ++ A AA R + E VPL +RNAPTKLMKE+ YGKGY Y D
Sbjct: 343 KSNAMETAYLAAAADARTMLA--EPVPLVIRNAPTKLMKELDYGKGYQYAHDTEEHITNM 400
Query: 530 ----DPSAKQSFLPPSLEGY--KF---LDW--------PKSNTTDK 558
D +++ P+ +G +F LDW P N +DK
Sbjct: 401 QCLPDALVGKAYYHPTEQGMEGRFRERLDWIKNWKKNHPPRNKSDK 446
>gi|239625342|ref|ZP_04668373.1| AAA ATPase central domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239519572|gb|EEQ59438.1| AAA ATPase central domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 442
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 278/427 (65%), Gaps = 37/427 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP +++ VGQ+HLL +LR + +++PS+IFWGPPG GKTTLA I +
Sbjct: 13 YNPLASRLRPDDLDGFVGQEHLLGKGKILRQLIEQDKIPSMIFWGPPGVGKTTLAGIIAH 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAV---EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+F+ SAVTSG+K++++ + E++R++ +K TV+FVDE+HRFNK+QQD+F
Sbjct: 73 KTHA--EFINFSAVTSGIKEIKEVMAQAENSRRMGIK----TVVFVDEIHRFNKAQQDAF 126
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSI+ IGATTENPSF + LLSRCRV L L ++ LLK+A+
Sbjct: 127 LPYVEKGSIILIGATTENPSFEINGALLSRCRVFVLQALTQENLSCLLKKALKS-----P 181
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
K +G V+++ ++ + GDAR ALN LE++ +
Sbjct: 182 KGLGYLDVDIDDHMLDMIAQFAAGDARTALNTLEMAVTNGEI------------------ 223
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
S VT++ K+ K YD+ GEEHYN+ISALHKSMR +D DAA+YWLARMLE
Sbjct: 224 -SADKTAVTMEVLKQCIGKKSFLYDKKGEEHYNIISALHKSMRNSDPDAAVYWLARMLEA 282
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PLY+ARRL+RFASEDVG+AD AL AV+ YQACHFLGMPECNV L+ V YL++AP
Sbjct: 283 GEDPLYVARRLIRFASEDVGMADSQALPLAVAAYQACHFLGMPECNVHLSHTVIYLSMAP 342
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
KS S Y A A++ + ++ E VPL++RNAPTKLM+E+ YG+GY+Y D + A+
Sbjct: 343 KSNSAYAAYETAKEDAQATMA--ETVPLNIRNAPTKLMEELHYGEGYVYAHDTGEKMARM 400
Query: 536 SFLPPSL 542
LP +L
Sbjct: 401 QCLPDAL 407
>gi|334127746|ref|ZP_08501649.1| replication-associated recombination protein A [Centipeda
periodontii DSM 2778]
gi|333388882|gb|EGK60052.1| replication-associated recombination protein A [Centipeda
periodontii DSM 2778]
Length = 472
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/449 (47%), Positives = 286/449 (63%), Gaps = 46/449 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++ + VGQ+HLL +LR + S+ + S+IFWGPPG GKTTLA+ I
Sbjct: 42 YQPLAERVRPRSLAEFVGQEHLLGKGKVLRRLIESDHITSMIFWGPPGVGKTTLAQII-- 99
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAVTSG+KD+R +++A + R+ +R ++FVDE+HRFNK+QQD+FLP
Sbjct: 100 AAQTQAKFINFSAVTSGIKDIRTVMQEADRRRM-YGERIIVFVDEIHRFNKAQQDAFLPF 158
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + + LLSRCRV L L D++ LL+ A+ + +
Sbjct: 159 VEKGSIVLIGATTENPSFEINSALLSRCRVFVLQGLNTEDIKRLLQHAISS-----ERGL 213
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G R+ ++ D + + + +GDAR AL+ LE+ + A DE DG
Sbjct: 214 GSQRIHLSEDGLMAVAAFANGDARSALSTLEMLVLNA---------------DERDG--- 255
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT ++ + K L YD++GEEH+NLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 256 -EIYVTEENLAQCISRKSLLYDKSGEEHFNLISALHKSMRNSDPDAAVYWLARMLEAGED 314
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L + V YL+LAPKS
Sbjct: 315 PLYVARRVTRFAAEDVGLADPRALQIAVAAYQACHYIGFPECNVHLTEAVIYLSLAPKSN 374
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD----------- 529
++ A AA R + E VPL +RNAPTKLMK++ YGKGY Y D
Sbjct: 375 TMETAYLAAAADARTMLA--EPVPLVIRNAPTKLMKDMDYGKGYQYAHDTEEHITNMQCL 432
Query: 530 -DPSAKQSFLPPSLEGY--KF---LDWPK 552
D +S+ P+ +G +F LDW K
Sbjct: 433 PDALVGRSYYHPTEQGMEGRFRERLDWIK 461
>gi|300767183|ref|ZP_07077095.1| replication-associated recombination protein A [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180402|ref|YP_003924530.1| replication-associated recombination protein A [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|418275063|ref|ZP_12890475.1| recombination factor protein RarA, ATPase, AAA family
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448821069|ref|YP_007414231.1| Recombination factor protein RarA, ATPase, AAA family
[Lactobacillus plantarum ZJ316]
gi|300495002|gb|EFK30158.1| replication-associated recombination protein A [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045893|gb|ADN98436.1| replication-associated recombination protein A [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|376009534|gb|EHS82862.1| recombination factor protein RarA, ATPase, AAA family
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448274566|gb|AGE39085.1| Recombination factor protein RarA, ATPase, AAA family
[Lactobacillus plantarum ZJ316]
Length = 449
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/439 (46%), Positives = 275/439 (62%), Gaps = 32/439 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RPV + D GQ+HLL P LLR + ++LPS+IFWGPPG GKTTLA+ I
Sbjct: 15 SPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAEDQLPSLIFWGPPGVGKTTLAEIIAQQ 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++R +++A R ++T++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--QSHFITFSAVTSGIKEIRQIMDEAEANR-DFGEKTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI IGATTENPSF + LLSRC+VL L L P +E +L+ A+ + K
Sbjct: 132 ERGSITLIGATTENPSFEINAALLSRCKVLVLKALTPDALEAVLQGALQN-----PKGFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + D + + +GDAR+ALN LE++ + + DG
Sbjct: 187 DLEITMQPDTLRLIAEFANGDARMALNTLEMAVLNG----------------DRDGKH-- 228
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + K L YD+ GEEHYN+ISALHKSMR +D DAAIYWL RML GGE P
Sbjct: 229 -VTITTAGLSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVDAAIYWLMRMLAGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+GLAD AL V+ +QAC +GMPEC+V L + V YLALAPKS +
Sbjct: 288 LYIARRLIRFASEDIGLADRQALPLTVAVFQACQLIGMPECDVNLTEAVTYLALAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+Y A AAQ I+ + N VPL +RNAPTKLMK++GYG Y Y D + + +P
Sbjct: 348 LYAAKSAAQADIKAT--GNLPVPLQIRNAPTKLMKDLGYGSDYKYAHDTAAKLTTMTTMP 405
Query: 540 PSLEGYKFLDWPKSNTTDK 558
P L+ +++ + P S +K
Sbjct: 406 PELKQHRYYE-PTSQGQEK 423
>gi|422343825|ref|ZP_16424752.1| hypothetical protein HMPREF9432_00812 [Selenomonas noxia F0398]
gi|355378241|gb|EHG25432.1| hypothetical protein HMPREF9432_00812 [Selenomonas noxia F0398]
Length = 472
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 285/449 (63%), Gaps = 46/449 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++ + VGQ+HLL +LR + S+ + S+IFWGPPG GKTTLA+ I
Sbjct: 44 YQPLAERVRPQSLEEFVGQEHLLGSGKVLRRLIESDHITSMIFWGPPGVGKTTLAQII-- 101
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAVTSG+KD+R +++A + R+ + R ++FVDE+HRFNK+QQD+FLP
Sbjct: 102 AAQTKAKFITFSAVTSGIKDIRTVMQEADRRRIYGD-RIIVFVDEIHRFNKAQQDAFLPF 160
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + + LLSRCRV L L D++ LL+ A+ + +
Sbjct: 161 VEKGSIVLIGATTENPSFEINSALLSRCRVFVLQGLTIDDIKRLLQHALSS-----DREL 215
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
R+ ++ + I + + +GDAR AL+ LE+ + A DE DG
Sbjct: 216 RVLRIHLSDEGIAAIAAFANGDARSALSTLEMLILNA---------------DERDG--- 257
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT ++ + K L YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 258 -EIYVTEENLAQCITRKSLLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 316
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L + V YL+LAPKS
Sbjct: 317 PLYVARRVTRFAAEDVGLADPRALEIAVAAYQACHYIGFPECNVHLTEAVIYLSLAPKSN 376
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD----------- 529
++ A +A R + E VPL +RNAPTKLMKE+ YG+GY Y D
Sbjct: 377 AMETAYLSAAADARNMLA--EPVPLVIRNAPTKLMKELDYGRGYQYAHDAAERITNMQCL 434
Query: 530 -DPSAKQSFLPPSLEGY--KF---LDWPK 552
D +S+ P+ +G +F LDW K
Sbjct: 435 PDSLVGRSYYHPTEQGMEARFRERLDWIK 463
>gi|374849953|dbj|BAL52954.1| recombination factor protein RarA [uncultured candidate division
OP1 bacterium]
gi|374856368|dbj|BAL59222.1| recombination factor protein RarA [uncultured candidate division
OP1 bacterium]
Length = 444
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/432 (48%), Positives = 275/432 (63%), Gaps = 35/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ + VGQ+ L+ P LR + N + S++ WGPPGTGKTTL I S
Sbjct: 13 PLAERMRPQSLEEFVGQEDLVGPGRPLRKMIEQNEIRSLVLWGPPGTGKTTLGWIIARSC 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SA S +K+++ A+E +++ R ++FVDE+HRFNK+QQ FLP +E
Sbjct: 73 GA--EFLAFSATRSSIKEIQSAMERSKRKFQSYGVRDLIFVDELHRFNKAQQAVFLPYVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSI+ +GATTENPSF +I PLLSR +V L PL P D++ +L+RA+ D GL G
Sbjct: 131 EGSILLVGATTENPSFEIIAPLLSRSQVFVLQPLSPEDIKKILRRALADRERGL----GA 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ DA EF+ CDGDAR ALN LE++A T + +K V+E+ Q
Sbjct: 187 RNLKLTPDAEEFIAQYCDGDARRALNLLELAAETTQELIDLKTVQEIAQR---------- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
K YD++GEEHYNLISALHKS+R +D DAA+YWLARML GGE PL
Sbjct: 237 --------------KLPIYDKSGEEHYNLISALHKSVRNSDPDAALYWLARMLAGGEDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+R A ED+GLADP AL+ AV+ A FLG PE + LA+ V YLA APKS S+
Sbjct: 283 YIARRLIRMAVEDIGLADPNALSVAVAAKDAYDFLGSPEGELALAETVIYLATAPKSNSV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+A G AQ + + +NE VPLHLRN T+LM+EIGYGK Y Y P A LP
Sbjct: 343 YKAFGEAQHDVETT--RNEPVPLHLRNPVTQLMREIGYGKDYQYAHQLPEGVAPMECLPQ 400
Query: 541 SLEGYKFLDWPK 552
SL+G ++ +PK
Sbjct: 401 SLQGRRYY-YPK 411
>gi|257065126|ref|YP_003144798.1| recombination factor protein RarA [Slackia heliotrinireducens DSM
20476]
gi|256792779|gb|ACV23449.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
Length = 439
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP+++++ GQ HL+ +LR + ++++ S+IFWGPPG GKTTLA+ I +
Sbjct: 13 PLAARLRPLSLDEYAGQKHLVGEGKVLRKLIEADQVSSMIFWGPPGVGKTTLAQIIAHQT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KFV SAVTSG+K++R ++ A R K T+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 73 --NAKFVNFSAVTSGIKEIRQVMKQAENNRSLGEK-TILFVDEIHRFNKAQQDAFLPFVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + LLSRC+V L L+ D+ LL RA+ D + G
Sbjct: 130 KGTIILIGATTENPSFEVNGALLSRCKVFVLKALETADLAELLDRAIHD-----PRGFGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V+V+ + +E + + +GDAR AL+ LE+ + V +DE V
Sbjct: 185 QQVDVSDELLEAIATFANGDARTALSTLEMVVLNGDV------------DDEG------V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + ++ + K L YD+ GEEHYN+ISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 227 IHVTEETVEQCTERKSLLYDKHGEEHYNIISALHKSMRNSDPDAAVYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ RFA+ED+G+AD AL A++ YQACHF+GMPEC V L + V Y+++APKS S+
Sbjct: 287 YVARRITRFAAEDIGMADTHALEIAIAAYQACHFIGMPECTVHLTEAVVYMSMAPKSNSL 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A G A K ++ + E VPL +RNAPT+LMKE+G+GKGY Y D D LP
Sbjct: 347 YVAYGRAAKDAQKDLA--EPVPLVIRNAPTRLMKELGFGKGYEYAHDAKDKLTTMQCLPD 404
Query: 541 SLEGYKF 547
L G ++
Sbjct: 405 RLVGREY 411
>gi|167756420|ref|ZP_02428547.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
gi|167703828|gb|EDS18407.1| ATPase, AAA family [Clostridium ramosum DSM 1402]
Length = 444
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/440 (45%), Positives = 281/440 (63%), Gaps = 38/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + VGQ HL+ P +L + S+ +PS++FWGPPG GKTTLA+ I N
Sbjct: 19 PLANRLRPTTLTEYVGQRHLIGPGKILYQLINSDVVPSMVFWGPPGVGKTTLARIIANQT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+KD+R ++ A++++ ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 79 KA--KFINFSAVTSGIKDIRAVMKQAQEVQ-DLGEKTIVFVDEIHRFNKAQQDAFLPYVE 135
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L D+ LL A+ K
Sbjct: 136 QGSIILIGATTENPSFEINSALLSRCKVFVLKALTTDDLFGLLHYALIS-----PKGFKD 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV---RVPVKEVKEVEQEDESDGCS 359
V ++ D + + +GDARVALN LE++ + A+ R+ V + + +EQ
Sbjct: 191 QNVMIDDDLLYMIAGFSNGDARVALNTLEMAVLNGAITHDRIVVDK-ETIEQ-------- 241
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
K L YD+ GEEHYN+ISALHKSMR +D DA+IYW++RM+E GE
Sbjct: 242 -------------CINQKSLLYDKKGEEHYNIISALHKSMRNSDIDASIYWMSRMIEAGE 288
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRL+RFASED+G+AD AL AV+ YQACH+ GMPECNV LA CV Y+ALAPKS
Sbjct: 289 DPLYVARRLIRFASEDIGMADSRALEIAVATYQACHYNGMPECNVNLAHCVTYMALAPKS 348
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSF 537
++Y A A+ ++ + VPL +RNAPTKLMKE+ YGKGY Y DD
Sbjct: 349 NALYNAYERAKHDALNTIA--DPVPLQIRNAPTKLMKELNYGKGYQYAHDYDDKITNMQC 406
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP +++ +++ +P + T+
Sbjct: 407 LPDNIKDHRYY-FPTNQGTE 425
>gi|292670832|ref|ZP_06604258.1| replication-associated recombination protein A [Selenomonas noxia
ATCC 43541]
gi|292647453|gb|EFF65425.1| replication-associated recombination protein A [Selenomonas noxia
ATCC 43541]
Length = 472
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/449 (46%), Positives = 285/449 (63%), Gaps = 46/449 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++ + VGQ+HLL +LR + S+ + S+IFWGPPG GKTTLA+ I
Sbjct: 44 YQPLAERVRPQSLEEFVGQEHLLGSGKVLRRLIESDHITSMIFWGPPGVGKTTLAQII-- 101
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAVTSG+KD+R +++A + R+ + R ++FVDE+HRFNK+QQD+FLP
Sbjct: 102 AAQTKAKFITFSAVTSGIKDIRTVMQEADRRRIYGD-RIIVFVDEIHRFNKAQQDAFLPF 160
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + + LLSRCRV L L D++ LL+ A+ + +
Sbjct: 161 VEKGSIVLIGATTENPSFEINSALLSRCRVFVLQGLTIDDIKRLLQHALSS-----DREL 215
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
R+ ++ + I + + +GDAR AL+ LE+ + A DE DG
Sbjct: 216 RVLRIHLSDEGIAAIAAFANGDARSALSTLEMLILNA---------------DERDG--- 257
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT ++ + K L YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 258 -EIYVTEENLAQCITRKSLLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 316
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L + V YL+LAPKS
Sbjct: 317 PLYVARRVTRFAAEDVGLADPRALEIAVAAYQACHYIGFPECNVHLTEAVIYLSLAPKSN 376
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD----------- 529
++ A +A R + E VPL +RNAPTKLMKE+ YG+GY Y D
Sbjct: 377 AMETAYLSAAADARNMLA--EPVPLVIRNAPTKLMKELDYGRGYQYAHDAAERITNMQCL 434
Query: 530 -DPSAKQSFLPPSLEGY--KF---LDWPK 552
D +S+ P+ +G +F LDW K
Sbjct: 435 PDSLVGRSYYHPTEQGMEARFRERLDWIK 463
>gi|225419780|ref|ZP_03762083.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
DSM 15981]
gi|225041584|gb|EEG51830.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
DSM 15981]
Length = 449
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/438 (48%), Positives = 278/438 (63%), Gaps = 32/438 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP +++ VGQ+ LL +LR + + +PS+IFWGPPG GKTTLA I
Sbjct: 23 APLASRLRPETLDEFVGQNQLLGEGKILRQIIDQDNIPSMIFWGPPGVGKTTLASIIAKR 82
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+F+ SAVTSG+K++++ + A + R + KRTV+FVDE+HRFNK+QQD+FLP +
Sbjct: 83 THA--EFINFSAVTSGIKEIKEVMARAEQGR-RMGKRTVVFVDEIHRFNKAQQDAFLPYV 139
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + LLSRCRV L L D+ LLK A+ + G
Sbjct: 140 EKGSIILIGATTENPSFEINAALLSRCRVFVLQGLGEEDLTRLLKNALQS-----PRGFG 194
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+++ + + GDAR ALN LE++ E+ E +
Sbjct: 195 YLNVDISDAMLGAIARFSGGDARTALNILEMAVSNG----------EISAEKTT------ 238
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT + ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWL+RMLE GE P
Sbjct: 239 ---VTPEILEQCMSRKSLLYDKNGEEHYNLISALHKSMRNSDPDAAVYWLSRMLEAGEDP 295
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASEDVGLAD AL+ AVS YQACHFLGMPECN+ LAQ V YL+LAP+S S
Sbjct: 296 LYIARRLIRFASEDVGLADNSALSLAVSAYQACHFLGMPECNLNLAQTVIYLSLAPRSNS 355
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A A+ + +E VPL +RNAPT LMK++ YG+GY+Y D + A LP
Sbjct: 356 VYMAYEHAKADALNML--SEPVPLVIRNAPTGLMKQLRYGEGYVYAHDTEEKIAHMECLP 413
Query: 540 PSLEGYKFLDWPKSNTTD 557
SL+G ++ P N T+
Sbjct: 414 ESLKGKRYY-LPTENGTE 430
>gi|408789973|ref|ZP_11201607.1| ATPase, AAA family [Lactobacillus florum 2F]
gi|408520712|gb|EKK20746.1| ATPase, AAA family [Lactobacillus florum 2F]
Length = 439
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/427 (46%), Positives = 273/427 (63%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP +N VGQ HLL P +LR + S+++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 PLANRVRPQTLNQFVGQQHLLEPGKILREIIESDQVSSMIFWGPPGVGKTTLAEIIARQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAV S + ++ ++ A + R + +RT++F+DE+HRFNK+QQD+FLP +E
Sbjct: 75 QAN--FLSFSAVDSSISKIKKIMQQAERDR-EVGQRTMVFIDEIHRFNKAQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI +GATTENPSF + + LLSRC+V L PL P D+ LL+ A+ + G
Sbjct: 132 RGSITLVGATTENPSFEVNSALLSRCQVFVLKPLTPADIVTLLQHALHN-----PAGFGE 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ + DGDAR ALN LE++ + E G V
Sbjct: 187 QVITITDQELQAIADFADGDARTALNTLEMAILNG----------------EKVGNHVTV 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL+ + K + YD+ GEEHYNLISALHKSMR +D DAAIYWL+RML GGE PL
Sbjct: 231 TNQTLE---QLLSNKQVLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLSRMLAGGEDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASEDVGLAD ALN ++ +QAC F+GMPEC+V L + V YLALAPKS ++
Sbjct: 288 YIARRLVRFASEDVGLADTNALNVTINVFQACQFIGMPECDVHLVEAVTYLALAPKSNAL 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY--IYTPDDPSAKQSFLPP 540
Y+A AA K ++++ N+ VP+ +RNAPTKLMK++GYG Y + D + +PP
Sbjct: 348 YQARLAAAKDVKQTA--NDPVPMQIRNAPTKLMKDLGYGSNYQLAHNTKDKLTTMTTMPP 405
Query: 541 SLEGYKF 547
S+ G+++
Sbjct: 406 SVAGHEY 412
>gi|322435979|ref|YP_004218191.1| ATPase AAA [Granulicella tundricola MP5ACTX9]
gi|321163706|gb|ADW69411.1| AAA ATPase central domain protein [Granulicella tundricola
MP5ACTX9]
Length = 445
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/428 (50%), Positives = 271/428 (63%), Gaps = 31/428 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++++ GQ HLL LR A+ + S+IFWGPPG GKTTLAK I
Sbjct: 19 APLAERMRPRDLDEYAGQQHLLGVGKPLRLAIERDDPASMIFWGPPGVGKTTLAKIIAQK 78
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S F+ SAV SG+K++++ + +A K + RT+LFVDE+HRFNK+QQD+FLP +
Sbjct: 79 TQAS--FIEFSAVLSGIKEIKNVMVEAEKAS-QFGSRTILFVDEIHRFNKAQQDAFLPYV 135
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV TL PL +V LL+RA+ D GL G
Sbjct: 136 ERGTIRLIGATTENPSFEINAALLSRCRVYTLQPLSEDEVIALLRRALADSEYGL----G 191
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ VE + DA+ + + GDAR ALNALE++A A R E+ P
Sbjct: 192 ESGVEADEDALASIAAYASGDARTALNALEVAAQLATGR------------GETTITKPL 239
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A EA Q + L YD+ GE+HY++ISALHKS+R +D DAA+YWL RMLE GE P
Sbjct: 240 AA--------EAMQRRMLLYDKKGEQHYDIISALHKSVRNSDPDAALYWLGRMLEAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+Y ARR+VR A ED+GLA P ALN +S A HFLG PE + LAQ V YLALAPKS +
Sbjct: 292 MYCARRIVRMAVEDIGLAAPEALNLCLSARDAMHFLGQPEGGLALAQAVVYLALAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+Y A G Q I+ +V E VP+HLRNAPTKLMKE+ YG+ Y Y D A LP
Sbjct: 352 VYVAYGQVQADIQRTVA--EPVPIHLRNAPTKLMKELDYGRDYQYAHDVEGRVADMECLP 409
Query: 540 PSLEGYKF 547
PSL G ++
Sbjct: 410 PSLAGKRY 417
>gi|365831789|ref|ZP_09373336.1| hypothetical protein HMPREF1021_02100 [Coprobacillus sp. 3_3_56FAA]
gi|365261374|gb|EHM91294.1| hypothetical protein HMPREF1021_02100 [Coprobacillus sp. 3_3_56FAA]
Length = 441
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/445 (45%), Positives = 284/445 (63%), Gaps = 38/445 (8%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
++ + PL+ R+RP + + VGQ HL+ P +L + S+ +PS++FWGPPG GKTTLA+
Sbjct: 11 NMSNEPLANRLRPTTLTEYVGQRHLIGPGKILYQLINSDVVPSMVFWGPPGVGKTTLARI 70
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I N KF+ SAVTSG+KD+R ++ A++++ ++T++FVDE+HRFNK+QQD+F
Sbjct: 71 IANQTKA--KFINFSAVTSGIKDIRAVMKQAQEVQ-DLGEKTIVFVDEIHRFNKAQQDAF 127
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E GSI+ IGATTENPSF + + LLSRC+V L L D+ LL A+
Sbjct: 128 LPYVEQGSIILIGATTENPSFEINSALLSRCKVFVLKALTTDDLFGLLHYALIS-----P 182
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV---RVPVKEVKEVEQEDE 354
K V ++ D + + +GDARVALN LE++ + A+ R+ V + + +EQ
Sbjct: 183 KGFKDQNVMIDDDLLYMIAGFSNGDARVALNTLEMAVLNGAITHDRIVVDK-ETIEQ--- 238
Query: 355 SDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
K L YD+ GEEHYN+ISALHKSMR +D DA+IYW++RM
Sbjct: 239 ------------------CINQKSLLYDKKGEEHYNIISALHKSMRNSDIDASIYWMSRM 280
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLA 474
+E GE PLY+ARRL+RFASED+G+AD AL AV+ YQACH+ GMPECNV LA CV Y+A
Sbjct: 281 IEAGEDPLYVARRLIRFASEDIGMADSRALEIAVATYQACHYNGMPECNVNLAHCVTYMA 340
Query: 475 LAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPS 532
LAPKS ++Y+A A+ ++ + VPL +RNAPTKLMKE+ YGKGY Y DD
Sbjct: 341 LAPKSNALYKAYERAKHDALNTIA--DPVPLQIRNAPTKLMKELNYGKGYQYAHDYDDKI 398
Query: 533 AKQSFLPPSLEGYKFLDWPKSNTTD 557
LP +++ ++ +P + T+
Sbjct: 399 TNMQCLPDNIKDRRYY-FPTNQGTE 422
>gi|313898685|ref|ZP_07832220.1| replication-associated recombination protein A [Clostridium sp.
HGF2]
gi|312956569|gb|EFR38202.1| replication-associated recombination protein A [Clostridium sp.
HGF2]
Length = 441
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/430 (47%), Positives = 271/430 (63%), Gaps = 37/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ D VGQ HLL +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 15 PLAARLRPASLQDYVGQKHLLGKGKILYNLIEKDMVSSMIFWGPPGVGKTTLARIIARQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ SAVTSG+++++ +++A R+ ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 75 QA--HFINFSAVTSGIREIKAVMKEAEDARL-YGRKTIVFVDEIHRFNKAQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V L L+ D+ LLK A+ D + G
Sbjct: 132 KGSIILIGATTENPSFEVNAALLSRCKVFVLKALEVSDLVELLKHALQD-----ERGFGS 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + + + L +GDAR ALN LE+ + +G S
Sbjct: 187 QHVLITEEQLHMLAVFANGDARTALNTLEMVVL--------------------NGESSEA 226
Query: 363 ALVTLDDAKEAFQC---KHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+V + E QC K L YDR GEEHYNLISALHKSMR +D DAAIYWLARMLE GE
Sbjct: 227 GIVITKEVLE--QCTSQKSLLYDRQGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGE 284
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRLVRFASED+G+AD AL V+ YQACHFLGMPECNV L V YL+L+PKS
Sbjct: 285 DPLYVARRLVRFASEDIGMADSRALEICVAVYQACHFLGMPECNVHLTHAVTYLSLSPKS 344
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
++Y A GAA++ + +E VPL +RNAPT LMK++ YG+GY Y D +
Sbjct: 345 NALYMAYGAAKEDAVHML--SEPVPLQIRNAPTSLMKDLHYGEGYQYAHDTQEKLTNMEC 402
Query: 538 LPPSLEGYKF 547
+P SL+G ++
Sbjct: 403 MPESLKGREY 412
>gi|357237009|ref|ZP_09124352.1| recombination factor protein RarA [Streptococcus criceti HS-6]
gi|356884991|gb|EHI75191.1| recombination factor protein RarA [Streptococcus criceti HS-6]
Length = 447
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/403 (48%), Positives = 270/403 (66%), Gaps = 29/403 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++ +GQ HL+ LR + + + S+IFWGPPG GKTTLA+ I +
Sbjct: 15 APLASRMRPTDLDHFIGQKHLVGEGKFLRDMIERDTISSMIFWGPPGVGKTTLAEIIAKT 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
KFV SAV +G+K++R + A + R K +RT++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--HSKFVTFSAVMNGIKEIRTIMNQAEENR-KLGERTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSR RV L L D+ LL++ + ++
Sbjct: 132 EKGSIILIGATTENPSFEVNSALLSRTRVFVLKQLTKEDLVDLLQQTL-----ASPQAFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+ + D +E + +GDAR ALN LE+ I + E +D++
Sbjct: 187 DLTVQASRDILEQIAIYANGDARSALNTLEMLIINS------------EAQDQT------ 228
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T D ++ K L YD+ GEEHYN+ISALHKSMR +D D+AIYWL RM++GGE P
Sbjct: 229 -VILTQDFLEDLLGKKTLYYDKDGEEHYNIISALHKSMRNSDVDSAIYWLGRMIDGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YIARRL+RFASED+GLAD ALN A++ +QAC ++G+PEC+V L QCV YL+LAPKS +
Sbjct: 288 IYIARRLIRFASEDIGLADNNALNLAINVFQACRYIGLPECDVHLTQCVIYLSLAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
Y+A A Q+ I++++ NE VPLHLRNA TKLMKE+GYGKGY
Sbjct: 348 TYKARTAVQRDIKQTI--NEPVPLHLRNATTKLMKEVGYGKGY 388
>gi|304436891|ref|ZP_07396855.1| replication-associated recombination protein A [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304370090|gb|EFM23751.1| replication-associated recombination protein A [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 447
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/450 (47%), Positives = 285/450 (63%), Gaps = 46/450 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++D VGQ+HLL +LR + S+R+ S+IFWGPPG GKTTLA+ I
Sbjct: 15 YQPLAERVRPRTLDDFVGQEHLLGQGKILRRLIESDRITSMIFWGPPGVGKTTLAQII-- 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F+ SAVTSG+K++R +++A + R+ +R V+FVDE+HRFNK+QQD+FLP
Sbjct: 73 AARTKAEFITFSAVTSGIKEIRTVMQEADRRRM-YGERIVVFVDEIHRFNKAQQDAFLPF 131
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + LLSRCRV L L D+E LL+ A+ + +
Sbjct: 132 VEKGSIVLIGATTENPSFEINNALLSRCRVFVLQGLTEADIEHLLRHAI-----ATDREL 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ ++ D I + + +GDAR AL+ LE+ + A DE DG
Sbjct: 187 SQMHIHLSDDGITAVAAFANGDARSALSTLEMLVLNA---------------DERDG--- 228
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T ++ + K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 229 -ELYITEENLAQCITRKSLLYDKNGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 287
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L Q V YL+LAPKS
Sbjct: 288 PLYVARRVTRFAAEDVGLADPRALELAVAAYQACHYIGYPECNVHLTQAVVYLSLAPKSN 347
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD----------- 529
++ A AA R + E VPL +RNAPT+LMK++ YGKGY Y D
Sbjct: 348 AMETAYLAAAADARTMLA--EPVPLVIRNAPTRLMKDLDYGKGYQYAHDAEEHITNMQCL 405
Query: 530 -DPSAKQSFLPPSLEGY--KF---LDWPKS 553
D A +++ P+ +G +F L+W K+
Sbjct: 406 PDALAGRAYYQPTDQGMESRFRERLEWIKA 435
>gi|380032388|ref|YP_004889379.1| recombination factor protein RarA; ATPase, AAA family
[Lactobacillus plantarum WCFS1]
gi|342241631|emb|CCC78865.1| recombination factor protein RarA; ATPase, AAA family
[Lactobacillus plantarum WCFS1]
Length = 458
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/439 (46%), Positives = 275/439 (62%), Gaps = 32/439 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RPV + D GQ+HLL P LLR + ++LPS+IFWGPPG GKTTLA+ I
Sbjct: 15 SPLAYRVRPVTLADFKGQEHLLGPGKLLRQLIAEDQLPSLIFWGPPGVGKTTLAEIIAQQ 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++R +++A R ++T++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--QSHFITFSAVTSGIKEIRQIMDEAEANR-DFGEKTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI IGATTENPSF + LLSRC+VL L L P +E +L+ A+ + K
Sbjct: 132 ERGSITLIGATTENPSFEINAALLSRCKVLVLKALTPDALEAVLQGALQN-----PKGFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + D + + +GDAR+ALN LE++ + + DG
Sbjct: 187 DLEITMQPDTLRLIAEFANGDARMALNTLEMAVLNG----------------DRDGKH-- 228
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + K L YD+ GEEHYN+ISALHKSMR +D DAAIYWL RML GGE P
Sbjct: 229 -VTITTAGLSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVDAAIYWLMRMLAGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+GLAD AL V+ +QAC +GMPEC+V L + V YLALAPKS +
Sbjct: 288 LYIARRLIRFASEDIGLADRQALPLTVAVFQACQLIGMPECDVNLTEAVTYLALAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+Y A AAQ I+ + N VPL +RNAPTKLMK++GYG Y Y D + + +P
Sbjct: 348 LYAAKSAAQADIKAT--GNLPVPLQIRNAPTKLMKDLGYGSDYQYAHDTAAKLTTMTTMP 405
Query: 540 PSLEGYKFLDWPKSNTTDK 558
P L+ +++ + P S +K
Sbjct: 406 PELKQHRYYE-PTSQGQEK 423
>gi|295110953|emb|CBL27703.1| Recombination protein MgsA [Synergistetes bacterium SGP1]
Length = 446
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/427 (48%), Positives = 272/427 (63%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL P +LR + + + S+IFWGPPG GKTTLA I
Sbjct: 14 PLAARMRPRTLDEFVGQTHLLGPGCVLRRLIEEDHVSSMIFWGPPGVGKTTLAGVIAQRT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAVTSG+K++R ++ A + R + RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 74 RAA--FINFSAVTSGIKEIRAVMQRAEEGR-RLGGRTIVFVDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSIV IGATTENPSF + LLSRCRV L L ++ LL RA+ D + +G
Sbjct: 131 RGSIVLIGATTENPSFEVNGALLSRCRVFVLKALTAEELAGLLSRALSD-----PRGLGR 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R EV D + + + +GDAR AL+ LE++ + E +G
Sbjct: 186 YRAEVAPDMLNAIATFANGDARAALSTLEMAVLNG--------------EPCGNGIR--- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + + + L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 229 --VTEEMLAQCTSRRSLLYDKGGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR++RFA EDVGLADP AL AV+ YQACHF+GMPEC+V L + V YL+LAP+S ++
Sbjct: 287 YVARRVLRFAGEDVGLADPKALEIAVAAYQACHFIGMPECSVHLTEAVVYLSLAPRSNAM 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A AA+ E + E VPL +RNAPT+LMKE+ YG+GY Y D P LP
Sbjct: 347 YTAYAAARSDAMEQLA--EPVPLVIRNAPTRLMKELDYGRGYQYAHDAPDRLTDMQCLPD 404
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 405 SLRGREY 411
>gi|350412894|ref|XP_003489805.1| PREDICTED: ATPase WRNIP1-like [Bombus impatiens]
Length = 536
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/447 (46%), Positives = 279/447 (62%), Gaps = 26/447 (5%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV- 179
H PL+ERMRP ++ VGQ H+L P+++L + + +P+II WGPPG GKT+LA I
Sbjct: 105 HIPLAERMRPTTLSGYVGQLHVLGPSTVLYQLLNKSEIPNIILWGPPGCGKTSLANVIAY 164
Query: 180 ---NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
N ++V LSA +GV +V++ + A +K N+RTV+F+DE+HRFNK QQD
Sbjct: 165 ICKNKSNGKMRYVKLSAAMAGVNEVKEVITIASN-ELKFNRRTVVFMDEIHRFNKIQQDV 223
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV---- 292
FLP +E G I IGATTENPSF L + LLSRCRV+ L L ++ +L RAV +
Sbjct: 224 FLPHVESGIITLIGATTENPSFSLNSALLSRCRVIVLEKLNTSNLMSILNRAVYSLEGTV 283
Query: 293 ---NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
N L + + ++ +IE+L CDGDAR+AL+ LE+ AV+ ++ +E
Sbjct: 284 YNSNKKLESANQIPKFIIDEPSIEWLAETCDGDARIALSGLEL-----AVQCKIQSNEEF 338
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
Q +TL + KE + H+ YD+ G++HY++ISALHKS+R +D +A++Y
Sbjct: 339 LQNGP--------VTITLANIKEGLKKTHMLYDKRGDQHYDMISALHKSVRASDENASLY 390
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WL RM+ GGE P+YIARRLVR A ED+GL DP AL A+ C +GMPEC+V+LAQC
Sbjct: 391 WLTRMILGGEDPVYIARRLVRMACEDIGLEDPKALGIAIHTMHGCKMIGMPECDVLLAQC 450
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
YLA APKS + AL AAQ+VI E G GVPL+LRNAPTKLMK +GY KGY
Sbjct: 451 TTYLARAPKSRLMEDALRAAQRVIAEHKGPQPGVPLYLRNAPTKLMKNLGYSKGYNMKHK 510
Query: 530 DPSAKQSFLPPSLEGYKFLDWPKSNTT 556
D S ++LP LE F D+ K+ T
Sbjct: 511 DESG-MNYLPEGLENVNFFDYHKNYMT 536
>gi|374321738|ref|YP_005074867.1| recombination factor protein RarA [Paenibacillus terrae HPL-003]
gi|357200747|gb|AET58644.1| recombination factor protein RarA [Paenibacillus terrae HPL-003]
Length = 441
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/427 (48%), Positives = 275/427 (64%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL R+RP ++ D +GQ HLL P +L+ + ++++ S+IFWGPPG GKTTLAK I N
Sbjct: 14 PLPNRVRPQSLEDFIGQKHLLGPGKVLQDMIKNDQVSSMIFWGPPGVGKTTLAKIIANQT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+KD+R+ +++A R + ++T+LF+DE+HRFNK+QQD+FLP +E
Sbjct: 74 KS--KFIDFSAVTSGIKDIRNVMKEAEGNR-QLGEKTLLFIDEIHRFNKAQQDAFLPYVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSR +V L+ L D+ LL++A+ D K G
Sbjct: 131 KGSIILIGATTENPSFEVNSALLSRSKVFVLHQLSSEDIVELLEKAILD-----PKGYGD 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + +GDARVALN LE++ + E++ E+ S
Sbjct: 186 QKIGFEDGVLSAIAEYSNGDARVALNTLEMAVLNG------------EKQGEAIEISKEG 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L + K L YD+ GEEHYN+ISALHKSMR +D +A+IYWL+RMLE GE PL
Sbjct: 234 LL-------QIIHRKSLLYDKDGEEHYNIISALHKSMRNSDVNASIYWLSRMLESGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLVRFASEDVGLAD AL VS +QAC F+GMPEC+V L Q V YL LAPKS S
Sbjct: 287 FIARRLVRFASEDVGLADNRALEITVSVFQACQFIGMPECDVHLTQAVIYLTLAPKSNSA 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K S+ +E VPL LRNAPTKLMKE+ YGKGY Y D + + +P
Sbjct: 347 YLAYRYAKKDALHSM--SEPVPLQLRNAPTKLMKELNYGKGYQYAHDTEEKLTRMQTMPD 404
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 405 SLIGREY 411
>gi|167761579|ref|ZP_02433706.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
gi|167660722|gb|EDS04852.1| recombination factor protein RarA [Clostridium scindens ATCC 35704]
Length = 437
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/428 (47%), Positives = 269/428 (62%), Gaps = 31/428 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP ++ D VGQ+HLL +LR + +++ S+IFWGPPG GKTTLA I
Sbjct: 14 APLASRLRPSSLEDFVGQEHLLGKGRMLRQLIERDQISSMIFWGPPGVGKTTLASIIAGR 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++++ + A + R RTVLFVDE+HRFNK+QQD+FLP +
Sbjct: 74 TKAD--FINFSAVTSGIKEIKEVMRQAEESRCMG-IRTVLFVDEIHRFNKAQQDAFLPFV 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSIV IGATTENPSF + LLSRCRV L L+ D+ LL A++ +
Sbjct: 131 EKGSIVLIGATTENPSFEVNAALLSRCRVFVLKALEETDLVKLLTNALNS-----PAGLK 185
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V + ++ + + +GDAR ALN LE++ I + +DG +
Sbjct: 186 DQNVRITQQQLKAIAAFANGDARTALNILEMAVINGEI--------------TADGMT-- 229
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT + ++ K L YD+ GEEHYNLISALHKSMR +D DAAIYW+ RMLEGGE P
Sbjct: 230 ---VTNEGLEQCISKKSLLYDKNGEEHYNLISALHKSMRNSDPDAAIYWMCRMLEGGENP 286
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+G+AD AL AV+ YQACHFLGMPEC+V L V YL++APKS +
Sbjct: 287 LYIARRLIRFASEDIGMADSHALQVAVAAYQACHFLGMPECDVHLTHAVTYLSVAPKSNA 346
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A A +K ++ Q VPL +RNAPT LMKE+ YGKGY Y D + +P
Sbjct: 347 LYMACEACKKDVKNLRAQP--VPLQIRNAPTSLMKELDYGKGYEYAHDTEEKLTHMQCMP 404
Query: 540 PSLEGYKF 547
+E K+
Sbjct: 405 EGMEDRKY 412
>gi|383861815|ref|XP_003706380.1| PREDICTED: ATPase WRNIP1-like [Megachile rotundata]
Length = 529
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/453 (45%), Positives = 282/453 (62%), Gaps = 26/453 (5%)
Query: 107 TRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGP 166
+ + S +L H PL+ERMRP ++ VGQ H++ P+++L + + +P+II WGP
Sbjct: 92 SNQEKQSKKSLSNDHVPLAERMRPTTLSGYVGQSHIIGPSTVLYQLLNKSEIPNIILWGP 151
Query: 167 PGTGKTTLAKAIV----NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222
PG GKT+LA I N ++V LSA +GV DV++ + A +K N+RTV+F
Sbjct: 152 PGCGKTSLANVIAHICKNKSNGKMRYVKLSAAMAGVSDVKEVITIASN-ELKFNRRTVVF 210
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
+DE+HRFNK+QQD FLP +E G+I+ IGATTENPSF L + LLSRCRV+ L L ++
Sbjct: 211 MDEIHRFNKTQQDVFLPHVESGTIILIGATTENPSFSLNSALLSRCRVVVLEKLTTRNLM 270
Query: 283 ILLKRAVDD----VNNGLSKSVGGTRVE---VNHDAIEFLCSNCDGDARVALNALEISAI 335
+LK+A+ V N K+ RV ++ IE+L CDGDAR+AL LE++
Sbjct: 271 SILKKAIYSLEGCVYNSSKKAEDTERVPKFIIDEPTIEWLAETCDGDARIALGGLELAV- 329
Query: 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISAL 395
+VP +E+E P +TL D +E+ + H+ YD+ G++HY++ISAL
Sbjct: 330 --QCKVP--------KEEEFLKHGPVT--ITLIDIEESLKKTHMLYDKKGDQHYDMISAL 377
Query: 396 HKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACH 455
HKS+R +D +A++YWL RM+ GGE P+YIARRLVR A EDVGLADP AL A+ C
Sbjct: 378 HKSVRASDENASLYWLTRMIMGGEDPVYIARRLVRMACEDVGLADPKALGIAIHTMHGCK 437
Query: 456 FLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLM 515
+GMPEC+V+LAQC YLA APKS + AL AAQ+ + E G VPLHLRNAPTKLM
Sbjct: 438 MIGMPECDVLLAQCTTYLAKAPKSRLMEDALRAAQRTVAEHKGPQPSVPLHLRNAPTKLM 497
Query: 516 KEIGYGKGYIYTPDDPSAKQSFLPPSLEGYKFL 548
K IG KGY D S ++LP LE F
Sbjct: 498 KNIGCAKGYNMRHKDESG-LNYLPEGLENINFF 529
>gi|346313333|ref|ZP_08854863.1| hypothetical protein HMPREF9022_00520 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345898246|gb|EGX68127.1| hypothetical protein HMPREF9022_00520 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 441
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/438 (47%), Positives = 271/438 (61%), Gaps = 45/438 (10%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
V PL+ R+RP ++ D VGQ HLL +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 11 VQKDPLAARLRPASLQDYVGQKHLLGKGKILYNLIEKDMVSSMIFWGPPGVGKTTLARII 70
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
F+ SAVTSG+++++ +++A R+ ++T++FVDE+HRFNK+QQD+FL
Sbjct: 71 ARQTQA--HFINFSAVTSGIREIKAVMKEAEDARL-YGRKTIVFVDEIHRFNKAQQDAFL 127
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E GSI+ IGATTENPSF + LLSRC+V L L+ D+ LLK A+ D +
Sbjct: 128 PYVEKGSIILIGATTENPSFEVNAALLSRCKVFVLKALEVSDLVELLKHALQD-----ER 182
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA----AVRVPVKEVKEVEQEDE 354
G V + + + L +GDAR ALN LE+ + A V KEV E
Sbjct: 183 GFGSQHVLITEEQLRMLAMFANGDARTALNTLEMVVLNGESSEAGTVITKEVLE------ 236
Query: 355 SDGCSPYVALVTLDDAKEAFQC---KHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
QC K L YDR GEEHYNLISALHKSMR +D DAAIYWL
Sbjct: 237 --------------------QCTSQKSLLYDRQGEEHYNLISALHKSMRNSDVDAAIYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARMLE GE PLY+ARRLVRFASED+G+AD AL V+ YQACHFLGMPECNV L V
Sbjct: 277 ARMLEAGEDPLYVARRLVRFASEDIGMADSRALEICVAAYQACHFLGMPECNVHLTHAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-- 529
YL+L+PKS ++Y A GAA++ + +E VPL +RNAPT LMK++ YG+GY Y D
Sbjct: 337 YLSLSPKSNALYMAYGAAKEDAVHML--SEPVPLQIRNAPTSLMKDLHYGEGYQYAHDTQ 394
Query: 530 DPSAKQSFLPPSLEGYKF 547
+ +P SL+G ++
Sbjct: 395 EKLTNMECMPESLKGREY 412
>gi|269216870|ref|ZP_06160724.1| replication-associated recombination protein A [Slackia exigua ATCC
700122]
gi|269129677|gb|EEZ60761.1| replication-associated recombination protein A [Slackia exigua ATCC
700122]
Length = 448
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/428 (47%), Positives = 277/428 (64%), Gaps = 32/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++VVGQ HL+ P +LR + S+++ S+IFWGPPG GKTTLA+ I +
Sbjct: 21 PLAARLRPRSLDEVVGQQHLIGPGKVLRRIIESDQVSSMIFWGPPGVGKTTLARVIADQT 80
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+K++R +++A R +RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 81 EA--RFINFSAVTSGIKEIRTIMQEADAQR-GLGRRTIVFVDEIHRFNKAQQDAFLPFVE 137
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF + LLSRC+V L L +DV LLKRA+ D + G
Sbjct: 138 KGAITLIGATTENPSFEVNGALLSRCKVFVLKALTENDVVELLKRALSD-----ERGFGD 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + D + + +GDAR AL+ LE++ + DE DG +
Sbjct: 193 ADVRIEDDLLHAIALFSNGDARSALSTLEMATLNG---------------DEQDG----I 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + + L YD+ G+EHYN+ISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 234 IAVTSDTVAQCTSNRRLLYDKDGDEHYNIISALHKSMRNSDPDAAVYWLARMLESGEDPL 293
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+ RFA+ED+GLAD ALN AV+ + ACHF+GMPEC+V L++ V YL+LAPKS S
Sbjct: 294 YIARRITRFAAEDIGLADTNALNVAVNAFHACHFIGMPECSVHLSEAVIYLSLAPKSNSS 353
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+K ++ E VPL +RNAPT+LMK++GYGKGY + +A LP
Sbjct: 354 YIAYEHAKKDALTTIA--EPVPLVIRNAPTRLMKDLGYGKGYKLAHHEEHKVAAGMRCLP 411
Query: 540 PSLEGYKF 547
SL G +
Sbjct: 412 DSLAGRTY 419
>gi|422329804|ref|ZP_16410829.1| hypothetical protein HMPREF0981_04149 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371655668|gb|EHO21008.1| hypothetical protein HMPREF0981_04149 [Erysipelotrichaceae
bacterium 6_1_45]
Length = 441
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/430 (47%), Positives = 271/430 (63%), Gaps = 37/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ D VGQ HLL +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 15 PLAARLRPASLQDYVGQKHLLGKGKILYNLIEKDMVSSMIFWGPPGVGKTTLARIIARQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ SAVTSG+++++ +++A R+ ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 75 QA--HFINFSAVTSGIREIKTVMKEAEGARL-YGRKTIVFVDEIHRFNKAQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V L L+ D+ LLK A+ D + G
Sbjct: 132 KGSIILIGATTENPSFEVNAALLSRCKVFVLKALEVSDLVELLKHALQD-----ERGFGS 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + + + L +GDAR ALN LE+ + +G S
Sbjct: 187 QHVLITEEQLHMLAVFANGDARTALNTLEMVVL--------------------NGESSEA 226
Query: 363 ALVTLDDAKEAFQC---KHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+V + E QC K L Y+R GEEHYNLISALHKSMR +D DAAIYWLARMLE GE
Sbjct: 227 GIVITKEVLE--QCTSQKSLLYERQGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGE 284
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRLVRFASED+G+AD AL V+ YQACHFLGMPECNV L V YL+L+PKS
Sbjct: 285 DPLYVARRLVRFASEDIGMADSRALEICVAVYQACHFLGMPECNVHLTHAVTYLSLSPKS 344
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
++Y A GAA++ + +E VPL +RNAPT LMK++ YG+GY Y D +
Sbjct: 345 NALYMAYGAAKEDAVHML--SEPVPLQIRNAPTSLMKDLQYGEGYQYAHDTQEKLTNMEC 402
Query: 538 LPPSLEGYKF 547
+P SL+G ++
Sbjct: 403 MPESLKGREY 412
>gi|218781932|ref|YP_002433250.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01]
gi|218763316|gb|ACL05782.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans
AK-01]
Length = 441
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 280/427 (65%), Gaps = 28/427 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E+MRP +++ +GQ+ ++ ++R AV S+ L S+IFWGPPG GKTTLA+ + N+
Sbjct: 11 PLAEKMRPRTLDEFIGQEAVVGEGGIVRRAVESDHLFSMIFWGPPGCGKTTLARIMANA- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ SY F+ +SAV SGVK +R+ VE+A+ R ++++LFVDE+HRFNK+QQD FLP +E
Sbjct: 70 SQSY-FMQISAVGSGVKQIREVVEEAKDRRNFHAQKSILFVDEIHRFNKAQQDGFLPHVE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF +I+PLLSRCRV+ L PL D++ +++ AV D GL G
Sbjct: 129 SGIITLIGATTENPSFEVISPLLSRCRVVVLKPLSSDDMKTVIQNAVQDEEKGL----GM 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + +A+E L DGDAR ALN LE++ A P +E + V
Sbjct: 185 YDVSLEEEALENLAQGADGDARKALNTLELAVFLAR---PDEEGRRV------------- 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + +A+Q K L YD+ G++H+++ISALHKS+RG+D DAA+YWL RML GE PL
Sbjct: 229 --VTAEHVAQAWQKKQLNYDKGGDQHFDIISALHKSLRGSDPDAAVYWLMRMLSAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VRFASEDVG ADP AL ++ Q+ FLG PE + L Q YLA APKS +
Sbjct: 287 YVARRMVRFASEDVGNADPHALVICMAAVQSYQFLGSPEGELALVQACLYLATAPKSNAA 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPP 540
Y AL AA+K I ++ + VP+H+RNAPT LMKE+GYG Y Y D A + ++P
Sbjct: 347 YMALKAAKKKISQTGAKP--VPMHIRNAPTGLMKELGYGAEYKYPHDYEGAYVPEEYMPE 404
Query: 541 SLEGYKF 547
LEG F
Sbjct: 405 GLEGTSF 411
>gi|94265038|ref|ZP_01288806.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
gi|93454471|gb|EAT04759.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
Length = 441
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/429 (49%), Positives = 267/429 (62%), Gaps = 27/429 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ERMRP ++ VGQ HLL + LL + S LPS++ WGPPG+GKTTLA+ +
Sbjct: 7 HTPLAERMRPASLAQFVGQRHLLGDDKLLSGLLRSGHLPSLLLWGPPGSGKTTLARLLAR 66
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ SAV SGVK++R VE +R KS + +VLFVDE+HRFNK QQD+FLP
Sbjct: 67 QSGAD--FIFFSAVLSGVKEIRAIVERSRLNLEKSGRGSVLFVDEIHRFNKGQQDAFLPH 124
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF +I PLLSRCRVL LN L+ ++ +L A+ D GL +S
Sbjct: 125 VESGLLTLIGATTENPSFQVIAPLLSRCRVLVLNALEEDELGEILAAALSDRQQGLGES- 183
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ ++ +A L + DGDAR L +LEI+A A D +
Sbjct: 184 ---ELSISDEAAAHLIAVADGDARNLLGSLEIAAALVA-----------------DKKAA 223
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ L D +EA Q K L YD AGEEHYNLISALHKS+R +D D A+YWL RML GEQ
Sbjct: 224 DTGRIELADIEEAIQRKSLRYDGAGEEHYNLISALHKSLRDSDPDGALYWLGRMLAAGEQ 283
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRL+RFASED+G ADP AL A++ + H LG PE + LAQ YLA APKS
Sbjct: 284 PLYIARRLIRFASEDIGNADPQALGLALNARETYHQLGTPEGELALAQATIYLATAPKSN 343
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFL 538
++Y A ++VIR S G E VPLHLRNAPT LM+ +GYG+ Y Y DD Q L
Sbjct: 344 AVYAAYNQVREVIRRS-GSLE-VPLHLRNAPTGLMRNLGYGREYQYAHDDRLGLVDQQHL 401
Query: 539 PPSLEGYKF 547
P ++ +F
Sbjct: 402 PDKIKDQRF 410
>gi|307183660|gb|EFN70363.1| ATPase WRNIP1 [Camponotus floridanus]
Length = 554
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/458 (44%), Positives = 285/458 (62%), Gaps = 40/458 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV--- 179
PL+E+MRP+++ + VGQ H+L P ++L + +P++I WGPPG GKT+LA I
Sbjct: 111 PLAEQMRPISLLNFVGQKHILGPRTMLSELLQKKEIPNMILWGPPGCGKTSLANVIAHMC 170
Query: 180 -NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
N + ++V LSA +GV++V++ + A K ++T++F+DE+HRFNK+QQD FL
Sbjct: 171 KNDTSRKLRYVKLSAAMAGVQEVKEVISVAAN-HAKFAQQTIVFMDEIHRFNKTQQDVFL 229
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL-- 296
P +E G+I IGATTENPSF L + LLSRCRV+ L+ L ++ +LKRAV + +
Sbjct: 230 PHVESGTITLIGATTENPSFSLNSALLSRCRVIVLHKLSVANLVSILKRAVISLEGIIHM 289
Query: 297 ----------SKSVGG---------TRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
S S G T+ ++ IE+L CDGDAR+AL LE++ +
Sbjct: 290 SDKSTLQSEESTSKGNKIDMQPSYNTKFIIDEPTIEWLAETCDGDARIALGGLEMAVRSK 349
Query: 338 AVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHK 397
A +E D A++TL+D +E+ + H+ YD+ G++HY+ ISALHK
Sbjct: 350 A-------------PNEEDLLDVGPAIITLNDVEESLKKTHMLYDKKGDQHYDTISALHK 396
Query: 398 SMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFL 457
S+R +D +A++YWL RM+ GGE P+YIARRLVR ASED+GLADP AL A+ C +
Sbjct: 397 SVRASDENASLYWLTRMISGGEDPVYIARRLVRMASEDIGLADPKALGIAMHTMHGCKMI 456
Query: 458 GMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKE 517
GMPEC+V+LAQC YLA APKS + AL AAQKV+ E G GVPLHLRNAPT+LMK+
Sbjct: 457 GMPECDVLLAQCTIYLARAPKSRLMEDALRAAQKVVAEHKGPQPGVPLHLRNAPTRLMKD 516
Query: 518 IGYGKGYIYTPDDPSAKQSFLPPSLEGYKFLDWPKSNT 555
+GY KGY D S S+LP LE FL + +T
Sbjct: 517 LGYSKGYNMRNKDESG-LSYLPEGLEDLNFLSDDEDDT 553
>gi|229550919|ref|ZP_04439644.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
gi|258538369|ref|YP_003172868.1| recombination factor protein RarA [Lactobacillus rhamnosus Lc 705]
gi|385834119|ref|YP_005871893.1| putative ATPase related to the helicase subunit of the holliday
junction resolvase [Lactobacillus rhamnosus ATCC 8530]
gi|418071593|ref|ZP_12708867.1| recombination factor protein RarA [Lactobacillus rhamnosus R0011]
gi|421769734|ref|ZP_16206439.1| ATPase AAA family [Lactobacillus rhamnosus LRHMDP2]
gi|421771680|ref|ZP_16208339.1| ATPase, AAA family [Lactobacillus rhamnosus LRHMDP3]
gi|423078224|ref|ZP_17066910.1| putative replication-associated recombination protein A
[Lactobacillus rhamnosus ATCC 21052]
gi|229315744|gb|EEN81717.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
gi|257150045|emb|CAR89017.1| AAA ATPase [Lactobacillus rhamnosus Lc 705]
gi|355393610|gb|AER63040.1| putative ATPase related to the helicase subunit of the holliday
junction resolvase [Lactobacillus rhamnosus ATCC 8530]
gi|357539087|gb|EHJ23107.1| recombination factor protein RarA [Lactobacillus rhamnosus R0011]
gi|357551928|gb|EHJ33708.1| putative replication-associated recombination protein A
[Lactobacillus rhamnosus ATCC 21052]
gi|411183501|gb|EKS50638.1| ATPase AAA family [Lactobacillus rhamnosus LRHMDP2]
gi|411185269|gb|EKS52398.1| ATPase, AAA family [Lactobacillus rhamnosus LRHMDP3]
Length = 448
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/428 (48%), Positives = 276/428 (64%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL N +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQTLDEFVGQTHLLGKNKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 QA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V+++ + + +GDAR+ALN LE++ A E + D S
Sbjct: 185 QQVKISKKLLAQIADFANGDARIALNTLEMAVTNA--------------ETKHDVVS--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 228 --VTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASEDVG+AD AL AV+ YQAC F+GMPEC V L V YL+LAPKS ++
Sbjct: 286 YIARRLVRFASEDVGMADSRALEIAVTVYQACQFIGMPECTVHLTHAVTYLSLAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y A GAA+K E++ E VPL +RN T LM+++GYGK Y Y T D + Q+ +P
Sbjct: 346 YTAYGAAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT-MP 402
Query: 540 PSLEGYKF 547
+L G +
Sbjct: 403 DNLIGKTY 410
>gi|52425453|ref|YP_088590.1| recombination factor protein RarA [Mannheimia succiniciproducens
MBEL55E]
gi|52307505|gb|AAU38005.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 449
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/429 (46%), Positives = 283/429 (65%), Gaps = 35/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ HLL P +L+ + + L S+IFWGP G GKTTLA+ I +
Sbjct: 25 PLASRLRPTSLDEFVGQKHLLEPGKVLQQMIVQDELSSMIFWGPSGVGKTTLAQIIAHQT 84
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ KF+ SAV SG+KD++ +E+A R + ++T++F+DE+HRFNK+QQD+FLP +E
Sbjct: 85 --NAKFITFSAVVSGIKDIKKIMEEAETDR-EMGEKTIVFIDEIHRFNKAQQDAFLPYVE 141
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L +D+ +LLK+A L+
Sbjct: 142 KGSIILIGATTENPSFEINSALLSRCKVFVLEALSNNDIVLLLKQA-------LNHPQAF 194
Query: 303 TRVEVNHDA--IEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+EVN D ++ + +GDAR+ALN LE++ VK VE++ S S
Sbjct: 195 IPLEVNADEKLLQAIAEFANGDARIALNTLELA------------VKNVEKQGNSVHLSE 242
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ L++ + + YD+ GEEHYN+ISALHK+MR +D DAAIYWL+RMLEGGE
Sbjct: 243 NLLADILNN-------RQIVYDKTGEEHYNIISALHKAMRNSDPDAAIYWLSRMLEGGED 295
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P+YIARRL+RFA ED+GLAD AL + +QAC F+GMPEC+V L + V YL+LAPKS
Sbjct: 296 PVYIARRLIRFAGEDIGLADTNALTLTTNVFQACRFIGMPECDVHLTEAVVYLSLAPKSN 355
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY--IYTPDDPSAKQSFL 538
+IY+A ++ ++ + +N+ VPLHLRNAPTKLMK +GYGKGY + +D +
Sbjct: 356 AIYQARCKVREDVKNT--RNDPVPLHLRNAPTKLMKNLGYGKGYKLAHHYEDKLTTMQTM 413
Query: 539 PPSLEGYKF 547
P +L G ++
Sbjct: 414 PDNLLGKQY 422
>gi|199599229|ref|ZP_03212631.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
gi|258507184|ref|YP_003169935.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
gi|385826909|ref|YP_005864681.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
gi|199589910|gb|EDY98014.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
gi|257147111|emb|CAR86084.1| AAA ATPase [Lactobacillus rhamnosus GG]
gi|259648554|dbj|BAI40716.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
Length = 448
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/428 (48%), Positives = 276/428 (64%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL N +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQTLDEFVGQTHLLGKNKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 QA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V+++ + + +GDAR+ALN LE++ A E + D S
Sbjct: 185 QQVKISKKLLAQIADFANGDARIALNTLEMAVTNA--------------ETKHDVVS--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 228 --VTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASEDVG+AD AL AV+ YQAC F+GMPEC V L V YL+LAPKS ++
Sbjct: 286 YIARRLVRFASEDVGMADSRALEIAVTVYQACQFIGMPECTVHLTHAVTYLSLAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y A GAA+K E++ E VPL +RN T LM+++GYGK Y Y T D + Q+ +P
Sbjct: 346 YTAYGAAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT-MP 402
Query: 540 PSLEGYKF 547
+L G +
Sbjct: 403 DNLIGKTY 410
>gi|374625460|ref|ZP_09697876.1| hypothetical protein HMPREF0978_01196 [Coprobacillus sp.
8_2_54BFAA]
gi|373915120|gb|EHQ46891.1| hypothetical protein HMPREF0978_01196 [Coprobacillus sp.
8_2_54BFAA]
Length = 440
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/440 (45%), Positives = 281/440 (63%), Gaps = 38/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + VGQ HL+ P +L + S+ +PS++FWGPPG GKTTLA+ I N
Sbjct: 15 PLANRLRPTTLTEYVGQRHLIGPGKILYQLINSDVVPSMVFWGPPGVGKTTLARIIANQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAVTSG+KD+R ++ A++++ ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 75 KA--KFINFSAVTSGIKDIRAVMKQAQEVQ-DLGEKTIVFVDEIHRFNKAQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L L D+ LL A+ K
Sbjct: 132 QGSIILIGATTENPSFEINSALLSRCKVFVLKALTTDDLFGLLHYALIS-----PKGFKD 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV---RVPVKEVKEVEQEDESDGCS 359
V ++ D + + +GDARVALN LE++ + A+ R+ V + + +EQ
Sbjct: 187 QNVMIDDDLLYMIAGFSNGDARVALNTLEMAVLNGAITHDRIVVDK-ETIEQ-------- 237
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
K L YD+ GEEHYN+ISALHKSMR +D DA+IYW++RM+E GE
Sbjct: 238 -------------CINQKSLLYDKKGEEHYNIISALHKSMRNSDIDASIYWMSRMIEAGE 284
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRL+RFASED+G+AD AL AV+ YQACH+ GMPE NV LA CV Y+ALAPKS
Sbjct: 285 DPLYVARRLIRFASEDIGMADSRALEIAVATYQACHYNGMPEFNVNLAHCVTYMALAPKS 344
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSF 537
++Y+A A+ ++ + VPL +RNAPTKLMKE+ YGKGY Y DD
Sbjct: 345 NALYKAYERAKHDALNTIA--DPVPLQIRNAPTKLMKELNYGKGYQYAHDYDDKITNMQC 402
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP +++ +++ +P + T+
Sbjct: 403 LPDNIKDHRYY-FPTNQGTE 421
>gi|401563801|ref|ZP_10804738.1| MgsA AAA+ ATPase, C-terminal domain protein [Selenomonas sp.
FOBRC6]
gi|400189489|gb|EJO23581.1| MgsA AAA+ ATPase, C-terminal domain protein [Selenomonas sp.
FOBRC6]
Length = 446
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/463 (46%), Positives = 286/463 (61%), Gaps = 54/463 (11%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP + D VGQ+HLL +LR + S+ + S+IFWGPPG GKTTLA+ I
Sbjct: 13 YQPLAERMRPQTLEDFVGQEHLLGKGKMLRRLIESDHIASMIFWGPPGVGKTTLARII-- 70
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF+ SAVTSG+K++R +++A + R+ +R ++FVDE+HRFNK+QQD+FLP
Sbjct: 71 AARTQAKFINFSAVTSGIKEIRTVMQEADRRRI-YGERIIVFVDEIHRFNKAQQDAFLPF 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSIV IGATTENPSF + + LLSRCRV L L D+ LL+ A+ + +
Sbjct: 130 VEKGSIVLIGATTENPSFEVNSALLSRCRVFVLQGLTTDDIARLLRHALS-----AERGL 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V ++ + + + + +GDAR AL+ LE+ + A DE DG
Sbjct: 185 RDLHVHLSEEGLAAVAAFANGDARSALSTLEMLVMNA---------------DERDG--- 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT ++ + K L YD++GEEHYNLISALHKSMR +D DAA+YWLARMLE GE
Sbjct: 227 -EIYVTEENLGQCISRKSLLYDKSGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGED 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ RFA+EDVGLADP AL AV+ YQACH++G PECNV L + V YL+LAPKS
Sbjct: 286 PLYVARRVTRFAAEDVGLADPRALEIAVAAYQACHYIGFPECNVHLTEAVIYLSLAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD----------- 529
++ A AA R + E VPL +RNAPTKLMKE+ YGKGY Y D
Sbjct: 346 AMETAYLAAAADARTMLA--EPVPLVIRNAPTKLMKELDYGKGYQYAHDTEEHITNMQCL 403
Query: 530 -DPSAKQSFLPPSLEGY--KF---LDW--------PKSNTTDK 558
D +S+ P+ +G +F LDW P N +DK
Sbjct: 404 PDALVGKSYYHPTEQGMEGRFRERLDWIKNWKKNHPPRNKSDK 446
>gi|225568918|ref|ZP_03777943.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
15053]
gi|225162417|gb|EEG75036.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
15053]
Length = 445
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/423 (47%), Positives = 269/423 (63%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP +++D GQ+HLL P LLR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 16 PLASRLRPESLDDFAGQEHLLGPGRLLRQLIDKDQISSMIFWGPPGVGKTTLARIIARRT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ SAVTSG+K++++ + A K R + RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 76 KAD--FIDFSAVTSGIKEIKEVMSKAEKDR-HAGIRTLVFVDEIHRFNKAQQDAFLPYVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRC+V L L D+ LL A+ G
Sbjct: 133 KGSIILIGATTENPSFEINAALLSRCKVFVLQALTEKDLLRLLGHALSS-----PAGFGH 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V++ ++++ + +GDAR ALN LE++ + + +P
Sbjct: 188 LNVDITPESLQMIAGFANGDARTALNTLEMAVLNGEL-------------------TPEK 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWL+RMLE GE PL
Sbjct: 229 TIVTKASIEQCISRKSLLYDKNGEEHYNLISALHKSMRNSDPDAAVYWLSRMLEAGEDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVG+AD AL AV+ YQACHFLGMPECNV L V YL++APKS ++
Sbjct: 289 YVARRLVRFASEDVGMADSQALPLAVAGYQACHFLGMPECNVHLTHVVTYLSMAPKSNAL 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSFLPP 540
Y A + ++ + E VPLHLRNAPTKLMK++ YGKGY Y DD +P
Sbjct: 349 YIACETCRADAQKCLA--EPVPLHLRNAPTKLMKDLHYGKGYEYAHDSDDKLTTMQCMPD 406
Query: 541 SLE 543
SL+
Sbjct: 407 SLK 409
>gi|336422044|ref|ZP_08602198.1| hypothetical protein HMPREF0993_01575 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009334|gb|EGN39328.1| hypothetical protein HMPREF0993_01575 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 437
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/428 (47%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP ++ D VGQ+HLL +LR + +++ S+IFWGPPG GKTTLA I
Sbjct: 14 APLASRLRPSSLEDFVGQEHLLGKGRMLRQLIERDQISSMIFWGPPGVGKTTLASIIAGR 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K++++ + A + R RTVLFVDE+HRFNK+QQD+FLP +
Sbjct: 74 TKAD--FINFSAVTSGIKEIKEVMRQAEESRCMG-IRTVLFVDEIHRFNKAQQDAFLPFV 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSIV IGATTENPSF + LLSRCRV L L+ D+ LL A++ +
Sbjct: 131 EKGSIVLIGATTENPSFEVNAALLSRCRVFVLKALEEMDLVKLLTNALNS-----PAGLK 185
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V + ++ + + +GDAR ALN LE++ I + +DG +
Sbjct: 186 DQNVRITQQQLKAIAAFANGDARTALNILEMAVINGEI--------------TADGMT-- 229
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT + ++ K L YD+ GEEHYNLISALHKSMR +D DAAIYW+ RMLEGGE P
Sbjct: 230 ---VTNEGLEQCISKKSLLYDKNGEEHYNLISALHKSMRNSDPDAAIYWMCRMLEGGENP 286
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+G+AD AL V+ YQACHFLGMPEC+V L V YL++APKS +
Sbjct: 287 LYIARRLIRFASEDIGMADSHALQVVVAAYQACHFLGMPECDVHLTHAVTYLSVAPKSNA 346
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A A +K ++ Q VPL +RNAPT LMKE+ YGKGY Y D + +P
Sbjct: 347 LYMACEACKKDVKNLRAQP--VPLQIRNAPTSLMKELDYGKGYEYAHDTEEKLTHMQCMP 404
Query: 540 PSLEGYKF 547
+E K+
Sbjct: 405 EGMEDRKY 412
>gi|116334669|ref|YP_796196.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
gi|116100016|gb|ABJ65165.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
Length = 439
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/432 (46%), Positives = 278/432 (64%), Gaps = 34/432 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP ++ VGQ HLL P +LR + ++++ S+IFWGPPG GKTTLA+ I
Sbjct: 13 NTPLASRVRPQTLDQFVGQAHLLGPGKILRELIENDQVSSMIFWGPPGVGKTTLAEIIAR 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ SAV S + ++ + A R + ++T++FVDE+HRFNK+QQD+FLP
Sbjct: 73 QTQAT--FLSFSAVDSSISKIKKIMHQAEADR-EIGEQTIVFVDEIHRFNKAQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSRC+V L L D++ LL+ N L+
Sbjct: 130 VERGSIILIGATTENPSFEVNSALLSRCKVFVLKALATADIDQLLR-------NALTNPA 182
Query: 301 GGT-RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G + RV + + + +GDAR+ALN LE++ + + + D +
Sbjct: 183 GFSGRVTIGDAELRAIAEFANGDARMALNTLEMAVLNG--------------DKQGDQVT 228
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
VT D K+ K + YD+ GEEHYN+ISALHKSMR +D DAAIYWL RML GGE
Sbjct: 229 -----VTQADLKQLITQKFVLYDKTGEEHYNIISALHKSMRNSDPDAAIYWLTRMLSGGE 283
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRLVRFASED+GLAD ALN A++ +QAC FLGMPECNV L + V YL+LAPKS
Sbjct: 284 DPLYVARRLVRFASEDIGLADTNALNVAINVFQACQFLGMPECNVHLVEAVTYLSLAPKS 343
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF-- 537
+IY+A AAQK ++++ ++E VPL LRNAPTKLMK++GYG Y Y + + +
Sbjct: 344 NAIYKASQAAQKDVQQT--RDEPVPLQLRNAPTKLMKDLGYGADYQYAHESAAKLTTMQT 401
Query: 538 LPPSLEGYKFLD 549
LP +L G+ + +
Sbjct: 402 LPEALRGHVYYE 413
>gi|116491207|ref|YP_810751.1| recombination factor protein RarA [Oenococcus oeni PSU-1]
gi|116091932|gb|ABJ57086.1| Recombination protein MgsA [Oenococcus oeni PSU-1]
Length = 445
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/427 (46%), Positives = 271/427 (63%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + VGQ++LL P +LR + +++ S+IFWGPPG GKTTLA+ I +
Sbjct: 17 PLASRVRPQTLEQFVGQENLLGPGKVLRELIEKDQISSMIFWGPPGVGKTTLAEIIAHRS 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SA TSG+K++R ++DA R + RT++F+DE+HRFNK+QQDSFLP +E
Sbjct: 77 KA--KFITFSAATSGIKEIRKIMKDAENNR-QFGVRTIVFIDEIHRFNKAQQDSFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSR +V L LK D+ LL+ A+ + + G +K
Sbjct: 134 KGSIILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVKLLENALKNPH-GFAKQ--- 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ ++ + + +GDAR ALN LE++ + E+K
Sbjct: 190 -KISISSRTLQLIANFANGDARTALNTLEMAVLNGHHTKNGTEIK--------------- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+D K+ K L YD+ GEEHYN+ISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 234 ----TEDLKQLITKKSLLYDKHGEEHYNIISALHKSMRNSDVDAAIYWLARMLESGEDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+RFASED+GLAD AL V+ YQA +GMPEC V L Q V YLALAPKS S+
Sbjct: 290 YVARRLIRFASEDIGLADSRALEITVAAYQASQLIGMPECTVNLTQAVTYLALAPKSNSL 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A G A+ ++S E VPL +RNAPTKLMKE+ YG+ Y Y + D +P
Sbjct: 350 YTAYGEAKSDAQKSFA--EPVPLQIRNAPTKLMKELHYGENYQYAHSSQDKLTSMQTMPE 407
Query: 541 SLEGYKF 547
+L G+ +
Sbjct: 408 NLLGHHY 414
>gi|374311622|ref|YP_005058052.1| MgsA AAA+ ATPase domain-containing protein [Granulicella mallensis
MP5ACTX8]
gi|358753632|gb|AEU37022.1| MgsA AAA+ ATPase domain-containing protein [Granulicella mallensis
MP5ACTX8]
Length = 447
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/431 (49%), Positives = 268/431 (62%), Gaps = 31/431 (7%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
V APL+ERMRP ++++ GQ HLL P LR + + S++FWGPPG GKTTLAK I
Sbjct: 17 VKTAPLAERMRPRSLDEFFGQQHLLGPGMPLRLQIERDDSASLLFWGPPGVGKTTLAKII 76
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
S F+ SAV SG+K+++ + +A K + RT+LFVDE+HRFNK+QQD+FL
Sbjct: 77 ARETQAS--FIEFSAVLSGIKEIKQVMVEAEKA-AEFGSRTILFVDEIHRFNKAQQDAFL 133
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G+I IGATTENPSF + LLSRCRV TL L +V LL+RA+ D GL
Sbjct: 134 PYVERGTIRLIGATTENPSFEINAALLSRCRVYTLRALGQDEVVALLQRALQDAERGL-- 191
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G ++EV A+E + S GDAR ALNALE+ A K E E
Sbjct: 192 --GALQLEVEEGALEAIASYSSGDARNALNALEVGA------------KLTEGRGEK--- 234
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
L+T A EA Q + L YD+ GE+HY++ISALHKS+R +DADAA+YWL RML G
Sbjct: 235 -----LLTKALAAEALQQRVLLYDKKGEQHYDIISALHKSVRNSDADAALYWLGRMLFAG 289
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P+Y+ARR+VR A ED+GLA P ALN +S A HFLG PE + LAQ V YLALAPK
Sbjct: 290 EDPMYVARRVVRMAVEDIGLAAPEALNLCLSARDAMHFLGSPEGELALAQAVVYLALAPK 349
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQS 536
S ++Y A GA + I E VPLHLRNAPTKLMKE+ YGK Y Y D A
Sbjct: 350 SNAVYTAFGAVRSDIESRPA--EPVPLHLRNAPTKLMKELDYGKDYQYAHDVEGRVADME 407
Query: 537 FLPPSLEGYKF 547
LPPSL ++
Sbjct: 408 CLPPSLANRRY 418
>gi|223984816|ref|ZP_03634926.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
12042]
gi|223963225|gb|EEF67627.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
12042]
Length = 443
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 272/429 (63%), Gaps = 31/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
++PL+ R+RP + +V GQ HLL +LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 NSPLASRLRPKTLEEVAGQKHLLGEGKILRQLIEQDQVSSMIFWGPPGVGKTTLARIIAE 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
FV SAVTSG+K++++ + A +L + ++T+LFVDE+HRFNK+QQD+FLP
Sbjct: 75 RT--QSHFVDFSAVTSGIKEIKEVMNKA-ELNRQMGEKTILFVDEIHRFNKAQQDAFLPF 131
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + LLSRC+V L L D+ LL RA+ D +
Sbjct: 132 VEKGSIILIGATTENPSFEINAALLSRCKVFVLQALATEDLTELLARALQD-----PRGF 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G VE+N D + + + +GDAR ALN LE+ + + ED
Sbjct: 187 GNYHVELNDDLLWMIANFANGDARTALNTLEMVVLNG----------DKNGED------- 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+VT + ++ K L YD+ GEEHYNLISALHKSMR +D A++YWLARMLE GE
Sbjct: 230 --IVVTKEHLEQCINRKSLLYDKKGEEHYNLISALHKSMRNSDVQASVYWLARMLEAGED 287
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VRFASED+G+AD A+ AV+ YQACHF GMPEC+V L Q V Y+AL+PKS
Sbjct: 288 PLYIARRVVRFASEDIGMADSRAMEVAVAAYQACHFNGMPECSVNLTQAVVYMALSPKSN 347
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--L 538
++Y A AA+K E + E VPL +RNAPT LMKE+ YG+GY Y D + L
Sbjct: 348 ALYMAYEAAKKDALEHLA--EPVPLAIRNAPTSLMKELHYGEGYQYAHDTEEKLTTLQCL 405
Query: 539 PPSLEGYKF 547
P +L K+
Sbjct: 406 PDALLDRKY 414
>gi|323484771|ref|ZP_08090128.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
WAL-14163]
gi|323401877|gb|EGA94218.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
WAL-14163]
Length = 444
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 275/430 (63%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP ++ VGQ HL+ +LR+ + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 SPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEKDQVTSMIFWGPPGVGKTTLARIIAGK 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S F+ SAVTSG+K+++ +E A K R RT+LFVDE+HRFNK+QQD+FLP +
Sbjct: 75 TRSS--FIDFSAVTSGIKEIKTVMEQAEKNR-SMGIRTILFVDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSRC+V L L ++ LL V K G
Sbjct: 132 EKGSIILIGATTENPSFEINSALLSRCKVFVLKALTAEELAELLAAVVKS-----PKGFG 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+++ + + F+ + +GDAR ALN LE++ + + D S S
Sbjct: 187 NQHVQISKEQLFFIANFANGDARTALNTLEMAVLNGEL-------------DRSGTLS-- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE P
Sbjct: 232 ---VTNQVLEQCTNKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDP 288
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+RFASED+G+ADP AL Q V+ YQACHF+GMPEC + L Q V Y+A+APKS S
Sbjct: 289 LYVARRLIRFASEDIGIADPQALTQVVAAYQACHFIGMPECTLNLTQAVVYMAMAPKSNS 348
Query: 482 IYRALGAAQKVIRESVG--QNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
IYRA A +E G E VPL +RNAPT+LM ++ YG+GY+Y + D A
Sbjct: 349 IYRAYEEA----KEDAGTMMAEPVPLQIRNAPTRLMADLHYGEGYVYAHETKDKIAAMDC 404
Query: 538 LPPSLEGYKF 547
LP SL+G ++
Sbjct: 405 LPASLKGREY 414
>gi|366086679|ref|ZP_09453164.1| recombination factor protein RarA [Lactobacillus zeae KCTC 3804]
Length = 448
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 273/427 (63%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL N +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQTLDEFVGQTHLLGKNKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 KA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V+++ + + +GDAR+ALN LE++ A E + D S
Sbjct: 185 QKVKISKKLLGQIADFANGDARIALNTLEMAVTNA--------------ETKGDIIS--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 228 --VTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+G+AD AL AV+ YQAC F+GMPEC V L V YL+LAPKS ++
Sbjct: 286 YIARRLVRFASEDIGMADSRALEIAVTVYQACQFIGMPECTVHLTHAVTYLSLAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A GAA+K E++ E VPL +RN T LM+++GYGK Y Y + D +P
Sbjct: 346 YTAYGAAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNAKDKLTTMQTMPD 403
Query: 541 SLEGYKF 547
+L G +
Sbjct: 404 NLVGRTY 410
>gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
Length = 451
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/430 (47%), Positives = 275/430 (63%), Gaps = 24/430 (5%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL++RMRP + +VVGQDH+ +P +L SA+ ++R+ S I WGPPG GKTTLA I
Sbjct: 16 PFRPLADRMRPQRLGEVVGQDHVAAPGKILHSAITNDRVFSTILWGPPGCGKTTLAGIIA 75
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
S F+ LSAV SGVKD+R +E A++ R +RT++FVDE+HRFNK+QQD+FL
Sbjct: 76 KET--SSHFMQLSAVLSGVKDIRAVIETAKEQRRIRGRRTLVFVDEIHRFNKAQQDAFLH 133
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G+IV +GATTENPSF +I L+SRCRV+TLN L D+ +L+RA D GL
Sbjct: 134 HVETGAIVLVGATTENPSFEVIPALVSRCRVITLNRLGERDIVTILERAATDPVRGL--- 190
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G + + +A+ ++ + DGD R AL LE + A+ R + G +
Sbjct: 191 -GSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASAR------------KGAGGKT 237
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
P + +T +D A + K L YD++GEEH+NLISA HKS+RG+D D AIYWL RM+ GE
Sbjct: 238 P--SAITPEDVAAAVEKKALRYDKSGEEHFNLISAFHKSLRGSDPDGAIYWLERMMAAGE 295
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ RR+VRFA+EDVG+ADP AL A++ +A FLG PE + L Q YLA APKS
Sbjct: 296 DPLYLIRRMVRFATEDVGVADPGALGVALNALEAYRFLGSPEGDDALFQAAVYLATAPKS 355
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSF 537
S+Y A +K + E+ + VPLH+RNAPT+LMK++GYG+GY Y D Q +
Sbjct: 356 NSVYMAHKRVKKKVEET--GSLPVPLHVRNAPTRLMKDMGYGQGYQYAHDHVGGYFPQEY 413
Query: 538 LPPSLEGYKF 547
LP L +F
Sbjct: 414 LPEGLRQERF 423
>gi|395244196|ref|ZP_10421168.1| Replication-associated recombination protein A [Lactobacillus
hominis CRBIP 24.179]
gi|394483525|emb|CCI82176.1| Replication-associated recombination protein A [Lactobacillus
hominis CRBIP 24.179]
Length = 437
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/428 (48%), Positives = 272/428 (63%), Gaps = 35/428 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++++VGQ HLL +LR + +++PS+I WGPPG GKTTLA+ I
Sbjct: 14 PLASRMRPQTLDEIVGQSHLLGKGKILRQMIDQDQVPSMILWGPPGVGKTTLARVIARHT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTS +KD++ + DA K ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 74 KA--EFISFSAVTSSIKDIKKVMGDAEK-NADLGQKTIVFVDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSIV IGATTENPSF + + LLSRCRV L L ++ +L+RA+ + G +++
Sbjct: 131 NGSIVLIGATTENPSFEVNSALLSRCRVFVLKQLDEAEISKMLERALKE---GFDQTLN- 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED-ESDGCSPY 361
++ H F DGDAR ALN LE+ VE D ESDG
Sbjct: 187 IDCKILHQIAIF----ADGDARSALNTLEMI---------------VENSDIESDGRIKT 227
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ D + K L YD+ GE+HYN+ISALHKSMR +D D+AIYWL RMLEGGE P
Sbjct: 228 DS----DLLTQILGGKTLKYDKNGEDHYNVISALHKSMRNSDVDSAIYWLTRMLEGGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR VRFASED+GLAD ALN A++ YQAC FLGMPECNV L + V YL+LAPKS +
Sbjct: 284 LYIARRCVRFASEDIGLADMNALNLAINVYQACQFLGMPECNVHLTELVIYLSLAPKSNA 343
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
IY A K ++E++ N+ VPL +RN TKLMKE GYGK Y Y D D +P
Sbjct: 344 IYMATQNVAKDVKETL--NQPVPLQIRNGVTKLMKEAGYGKNYQYAHDTKDKITSMQTMP 401
Query: 540 PSLEGYKF 547
+L G+ +
Sbjct: 402 DNLVGHHY 409
>gi|255283517|ref|ZP_05348072.1| replication-associated recombination protein A [Bryantella
formatexigens DSM 14469]
gi|255265974|gb|EET59179.1| recombination factor protein RarA [Marvinbryantia formatexigens DSM
14469]
Length = 468
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/407 (48%), Positives = 269/407 (66%), Gaps = 29/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D VGQ+HLL P +LR + +++ S+IFWGPPG GKTTLA I +
Sbjct: 37 PLASRLRPERLEDFVGQEHLLGPGKMLRRLIEEDQISSMIFWGPPGVGKTTLAGII--AA 94
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+K++++ ++ A R + +RTVLFVDE+HRFNK+QQD+FLP +E
Sbjct: 95 HTKAEFINFSAVTSGIKEIKEVMQQAENSR-RMGRRTVLFVDEIHRFNKAQQDAFLPFVE 153
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSRCRV L L+ D+ +L+ A+ + L
Sbjct: 154 KGSIILIGATTENPSFEVNAALLSRCRVFVLKALEEKDLVRVLENALTSPSGFLH----- 208
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V+++ ++ + + +GDAR ALN LE++ + ++G +
Sbjct: 209 SHVKMSGRQLQAIAAFANGDARTALNTLEMAVTNGEI--------------SAEGIT--- 251
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT + ++ K L YD++GEEHYNLISALHKSMR +D DAAIYW+ RMLEGGE PL
Sbjct: 252 --VTDEGLEQCISRKSLLYDKSGEEHYNLISALHKSMRNSDPDAAIYWMCRMLEGGEDPL 309
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+RFASED+G+AD AL AV+ YQACHFLGMPEC+V L V YL++APKS ++
Sbjct: 310 YIARRLIRFASEDIGMADSQALQVAVAAYQACHFLGMPECDVHLTHAVTYLSMAPKSNAL 369
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A ++ ++E + E VPL LRNAPT LMKE+ YG GY Y D
Sbjct: 370 YTACEECKRDVKER--RAEPVPLWLRNAPTGLMKELHYGDGYQYAHD 414
>gi|355627788|ref|ZP_09049419.1| hypothetical protein HMPREF1020_03498 [Clostridium sp. 7_3_54FAA]
gi|354820113|gb|EHF04539.1| hypothetical protein HMPREF1020_03498 [Clostridium sp. 7_3_54FAA]
Length = 443
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 275/430 (63%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP ++ VGQ HL+ +LR+ + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 14 SPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEKDQVTSMIFWGPPGVGKTTLARIIAGK 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S F+ SAVTSG+K+++ +E A K R RT+LFVDE+HRFNK+QQD+FLP +
Sbjct: 74 TRSS--FIDFSAVTSGIKEIKTVMEQAEKNR-SMGIRTILFVDEIHRFNKAQQDAFLPYV 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSRC+V L L ++ LL V K G
Sbjct: 131 EKGSIILIGATTENPSFEINSALLSRCKVFVLKALTAEELAELLAAVVKS-----PKGFG 185
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+++ + + F+ + +GDAR ALN LE++ + + D S S
Sbjct: 186 NQHVQISKEQLFFIANFANGDARTALNTLEMAVLNGEL-------------DRSGTLS-- 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE P
Sbjct: 231 ---VTNQVLEQCTNKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+RFASED+G+ADP AL Q V+ YQACHF+GMPEC + L Q V Y+A+APKS S
Sbjct: 288 LYVARRLIRFASEDIGIADPQALTQVVAAYQACHFIGMPECTLNLTQAVVYMAMAPKSNS 347
Query: 482 IYRALGAAQKVIRESVG--QNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
IYRA A +E G E VPL +RNAPT+LM ++ YG+GY+Y + D A
Sbjct: 348 IYRAYEEA----KEDAGTMMAEPVPLQIRNAPTRLMADLHYGEGYVYAHETKDKIAAMDC 403
Query: 538 LPPSLEGYKF 547
LP SL+G ++
Sbjct: 404 LPASLKGREY 413
>gi|323691840|ref|ZP_08106096.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|323504122|gb|EGB19928.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
WAL-14673]
Length = 444
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 275/430 (63%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP ++ VGQ HL+ +LR+ + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 SPLASRIRPDTLDGFVGQKHLIGEGKVLRNLIEKDQVTSMIFWGPPGVGKTTLARIIAGK 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S F+ SAVTSG+K+++ +E A K R RT+LFVDE+HRFNK+QQD+FLP +
Sbjct: 75 TRSS--FIDFSAVTSGIKEIKTVMEQAEKNR-SMGIRTILFVDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSRC+V L L ++ LL V K G
Sbjct: 132 EKGSIILIGATTENPSFEINSALLSRCKVFVLKALTAEELAELLAAVVKS-----PKGFG 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+++ + + F+ + +GDAR ALN LE++ + + D S S
Sbjct: 187 NQHVQISKEQLFFIANFANGDARTALNTLEMAVLNGEL-------------DRSGTLS-- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT ++ K L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE P
Sbjct: 232 ---VTNQVLEQCTNKKSLLYDKKGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDP 288
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+RFASED+G+ADP AL Q V+ YQACHF+GMPEC + L Q V Y+A+APKS S
Sbjct: 289 LYVARRLIRFASEDIGIADPQALTQVVAAYQACHFIGMPECTLNLTQAVVYMAMAPKSNS 348
Query: 482 IYRALGAAQKVIRESVG--QNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
IYRA A +E G E VPL +RNAPT+LM ++ YG+GY+Y + D A
Sbjct: 349 IYRAYEEA----KEDAGTMMAEPVPLQIRNAPTRLMADLHYGEGYVYAHETKDKIAAMDC 404
Query: 538 LPPSLEGYKF 547
LP SL+G ++
Sbjct: 405 LPASLKGREY 414
>gi|290890726|ref|ZP_06553796.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
gi|419758751|ref|ZP_14285065.1| recombination factor protein RarA [Oenococcus oeni AWRIB304]
gi|419857882|ref|ZP_14380583.1| recombination factor protein RarA [Oenococcus oeni AWRIB202]
gi|419858440|ref|ZP_14381113.1| recombination factor protein RarA [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421184089|ref|ZP_15641516.1| recombination factor protein RarA [Oenococcus oeni AWRIB318]
gi|421187127|ref|ZP_15644503.1| recombination factor protein RarA [Oenococcus oeni AWRIB418]
gi|421187427|ref|ZP_15644787.1| recombination factor protein RarA [Oenococcus oeni AWRIB419]
gi|421193808|ref|ZP_15651054.1| recombination factor protein RarA [Oenococcus oeni AWRIB553]
gi|421195569|ref|ZP_15652774.1| recombination factor protein RarA [Oenococcus oeni AWRIB568]
gi|421197681|ref|ZP_15654853.1| recombination factor protein RarA [Oenococcus oeni AWRIB576]
gi|290479701|gb|EFD88355.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
gi|399904581|gb|EJN92035.1| recombination factor protein RarA [Oenococcus oeni AWRIB304]
gi|399963954|gb|EJN98609.1| recombination factor protein RarA [Oenococcus oeni AWRIB418]
gi|399968323|gb|EJO02775.1| recombination factor protein RarA [Oenococcus oeni AWRIB318]
gi|399969226|gb|EJO03649.1| recombination factor protein RarA [Oenococcus oeni AWRIB419]
gi|399971967|gb|EJO06206.1| recombination factor protein RarA [Oenococcus oeni AWRIB553]
gi|399974733|gb|EJO08816.1| recombination factor protein RarA [Oenococcus oeni AWRIB576]
gi|399975399|gb|EJO09451.1| recombination factor protein RarA [Oenococcus oeni AWRIB568]
gi|410497034|gb|EKP88512.1| recombination factor protein RarA [Oenococcus oeni AWRIB202]
gi|410498876|gb|EKP90321.1| recombination factor protein RarA [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 445
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/427 (46%), Positives = 270/427 (63%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + VGQ++LL P +LR + +++ S+IFWGPPG GKTTLA+ I +
Sbjct: 17 PLASRVRPQTLEQFVGQENLLGPGKVLRELIEKDQISSMIFWGPPGVGKTTLAEIIAHRS 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SA TSG+K++R ++DA R + RT++F+DE+HRFNK+QQDSFLP +E
Sbjct: 77 KA--KFITFSAATSGIKEIRKIMKDAENNR-QFGVRTIVFIDEIHRFNKAQQDSFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSR +V L LK D+ LL+ A+ + + G +K
Sbjct: 134 KGSIILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVKLLENALKNPH-GFAKQ--- 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ ++ + +GDAR ALN LE++ + E+K
Sbjct: 190 -KISISSRTLQLIADFANGDARTALNTLEMAVLNGHHTKNGTEIK--------------- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+D K+ K L YD+ GEEHYN+ISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 234 ----TEDLKQLITKKSLLYDKHGEEHYNIISALHKSMRNSDVDAAIYWLARMLESGEDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+RFASED+GLAD AL V+ YQA +GMPEC V L Q V YLALAPKS S+
Sbjct: 290 YVARRLIRFASEDIGLADSRALEITVAAYQASQLIGMPECTVNLTQAVTYLALAPKSNSL 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A G A+ ++S E VPL +RNAPTKLMKE+ YG+ Y Y + D +P
Sbjct: 350 YTAYGEAKSDAQKSFA--EPVPLQIRNAPTKLMKELHYGENYQYAHSSQDKLTSMQTMPE 407
Query: 541 SLEGYKF 547
+L G+ +
Sbjct: 408 NLLGHHY 414
>gi|406955253|gb|EKD83801.1| hypothetical protein ACD_39C00443G0003 [uncultured bacterium]
Length = 464
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/441 (47%), Positives = 282/441 (63%), Gaps = 29/441 (6%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P+ PL++RMRP + D++GQ+H+L P LR + + SIIFWGPPG GKTTLA+ +
Sbjct: 32 PYQPLADRMRPEKLEDILGQEHILGPGKPLRMLMQAGLSGSIIFWGPPGCGKTTLARVMA 91
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+F+ LSAVTSGVKD++ A E A +LR N++T+LFVDE+HRFNK+QQD+ LP
Sbjct: 92 KHSDA--EFIQLSAVTSGVKDLKTAFEQAYELRRCLNRKTMLFVDEIHRFNKAQQDALLP 149
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
IE G++VF+GATTENPSF +I+ LLSRC+VL L P+ + +L RAVD + +S++
Sbjct: 150 HIESGAVVFVGATTENPSFEVISALLSRCQVLVLKPVAVEALLNILLRAVD-TDRRISRA 208
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
++ ++ AIE + GDAR+ALN LE A + P E + G
Sbjct: 209 ---PKIAIDDSAIERIAQMAAGDARIALNVLETCCDVARQQAP---------ESPAFGAE 256
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
LV E FQ K L YD+ GEEHYNLISALHKSMRG+D DA++YWL RM+EGGE
Sbjct: 257 ----LVA-----ETFQSKMLRYDKGGEEHYNLISALHKSMRGSDPDASLYWLYRMIEGGE 307
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+I RR++RFASED+G+ADP AL A+S QA ++G PE ++ LAQ YLA APKS
Sbjct: 308 DCRFILRRMIRFASEDIGMADPFALTLAMSAAQAYDYIGPPEAHICLAQLAVYLAAAPKS 367
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSF 537
++Y+A A++ IR GQ VP HLRNAPT L++E+GYG Y Y D +++
Sbjct: 368 NALYKAEKLAKQAIRN--GQEPSVPYHLRNAPTGLLRELGYGHEYKYPHDFKGGFVDENY 425
Query: 538 LPPSLEGYKFLDWPKSNTTDK 558
P LE +F P N +K
Sbjct: 426 FPEGLENSRFYK-PTENGKEK 445
>gi|319937217|ref|ZP_08011624.1| ATPase [Coprobacillus sp. 29_1]
gi|319807583|gb|EFW04176.1| ATPase [Coprobacillus sp. 29_1]
Length = 442
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 277/427 (64%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++D VGQ HL+ +L + +++ S+IFWGPPG GKTTLA+ I N
Sbjct: 14 PLASRLRPQTLSDYVGQKHLIGQGKILWQLIEHDQISSMIFWGPPGVGKTTLARIIAN-- 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+KD++ ++ A++ ++ RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 72 CTQSEFIDFSAVTSGIKDIKAVMKQAQEKQMMG-IRTIVFVDEIHRFNKAQQDAFLPYVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRC+V L+ L+ D+ LLK A+ + G
Sbjct: 131 QGSIILIGATTENPSFEINSALLSRCKVFVLHGLEIEDILDLLKHALSS-----EQGFGN 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + + + S +GDAR+ALN LE++ + +QE++
Sbjct: 186 ENIEIEDNGLYMIASFSNGDARMALNTLEMAVLNGE-----------QQENK-------- 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+++ +E K YD+ GEEHYN+ISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 227 IVISQKIIEECTNRKSFLYDKKGEEHYNIISALHKSMRNSDVDAAIYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+G+ D AL A++ YQACHFLG+PECNV L V YL+L+ KS ++
Sbjct: 287 YIARRLVRFASEDIGMTDSRALEIAIAGYQACHFLGVPECNVHLTHVVTYLSLSVKSNAL 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A +A+K +++G E VPL +RNAPTKLMKE+ YG+GY Y D D + LP
Sbjct: 347 YMAYESAKKDALDTLG--EPVPLQIRNAPTKLMKELHYGEGYQYAHDYEDQITSMTCLPD 404
Query: 541 SLEGYKF 547
+ + +
Sbjct: 405 KIGDHHY 411
>gi|429204827|ref|ZP_19196109.1| recombination factor protein RarA [Lactobacillus saerimneri 30a]
gi|428146863|gb|EKW99097.1| recombination factor protein RarA [Lactobacillus saerimneri 30a]
Length = 463
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/429 (46%), Positives = 276/429 (64%), Gaps = 34/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + +V+GQ HLL P +LR + ++++ S+I WGPPG GKTTLA+ I +
Sbjct: 34 PLASRVRPRTLAEVIGQKHLLGPGRILRELITNDQVSSLILWGPPGVGKTTLARII--AA 91
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAV S +K +R+ ++ A + ++T++F+DE+HRFNK+QQD+FLP +E
Sbjct: 92 QTKAEFISFSAVDSSIKTIREVMKRA-EANSDYGQQTIVFIDEIHRFNKAQQDAFLPYVE 150
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI I ATTENPSF L + LLSRC+V L PL D+ LL+R V D ++ G
Sbjct: 151 RGSITLIAATTENPSFELNSALLSRCKVFVLKPLTTDDIITLLQRVVQD-----ERAFPG 205
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE+ H+A L + +GDAR ALN LE++ + SD +
Sbjct: 206 VTVELGHEAQVMLATFANGDARTALNILEMAVLN------------------SDHRTANK 247
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT ++ K + YD+ GEEHYN+ISALHK++R +D DAAIYWL+RML GGE PL
Sbjct: 248 VIVTPTQLQQLTGQKMVLYDKNGEEHYNIISALHKALRNSDVDAAIYWLSRMLAGGEDPL 307
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASEDVGLAD AL AV +QAC F+GMPEC+V L + V YLALAPKS ++
Sbjct: 308 YIARRLVRFASEDVGLADTNALRVAVDVFQACQFIGMPECDVHLTEAVIYLALAPKSNAV 367
Query: 483 YRALGAAQKVIRESVGQ--NEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF--L 538
Y AA++ +R V NE VPL +RNAPTKLM+E+ YG+GY Y + + +
Sbjct: 368 Y----AARQRVRHDVQATINEPVPLQIRNAPTKLMQELEYGQGYQYAHATAAKLTTMKTM 423
Query: 539 PPSLEGYKF 547
P +L+G+++
Sbjct: 424 PDNLQGHRY 432
>gi|118586319|ref|ZP_01543772.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
gi|118433245|gb|EAV39958.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
Length = 467
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/427 (46%), Positives = 270/427 (63%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + VGQ++LL P +LR + +++ S+IFWGPPG GKTTLA+ I +
Sbjct: 39 PLASRVRPQTLEQFVGQENLLGPGKVLRELIEKDQISSMIFWGPPGVGKTTLAEIIAHRS 98
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SA TSG+K++R ++DA R + RT++F+DE+HRFNK+QQDSFLP +E
Sbjct: 99 KA--KFITFSAATSGIKEIRKIMKDAENNR-QFGVRTIVFIDEIHRFNKAQQDSFLPYVE 155
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSR +V L LK D+ LL+ A+ + + G +K
Sbjct: 156 KGSIILIGATTENPSFEINSALLSRSKVFVLRQLKSSDIVKLLENALKNPH-GFAKQ--- 211
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ ++ + +GDAR ALN LE++ + E+K
Sbjct: 212 -KISISSRTLQLIADFANGDARTALNTLEMAVLNGHHTKNGTEIKT-------------- 256
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+D K+ K L YD+ GEEHYN+ISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 257 -----EDLKQLITKKSLLYDKHGEEHYNIISALHKSMRNSDVDAAIYWLARMLESGEDPL 311
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+RFASED+GLAD AL V+ YQA +GMPEC V L Q V YLALAPKS S+
Sbjct: 312 YVARRLIRFASEDIGLADSRALEITVAAYQASQLIGMPECTVNLTQAVTYLALAPKSNSL 371
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A G A+ ++S E VPL +RNAPTKLMKE+ YG+ Y Y + D +P
Sbjct: 372 YTAYGEAKSDAQKSFA--EPVPLQIRNAPTKLMKELHYGENYQYAHSSQDKLTSMQTMPE 429
Query: 541 SLEGYKF 547
+L G+ +
Sbjct: 430 NLLGHHY 436
>gi|95930182|ref|ZP_01312921.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
gi|95133876|gb|EAT15536.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
Length = 439
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/429 (48%), Positives = 270/429 (62%), Gaps = 34/429 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
PL+ERMRP ++++VVGQ HLL+ LR + +++L S+IFWGPPGTGKTTLA+ I
Sbjct: 12 QTPLAERMRPQHLDEVVGQQHLLADGCPLRQIIEADQLSSLIFWGPPGTGKTTLAQVIAQ 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S +FV SA+ +GVKD+R V A++ R RT+LFVDE+HRFNKSQQD+FLP
Sbjct: 72 ST--RSRFVFFSAIMNGVKDIRHIVSRAKEDRSMYGTRTILFVDEIHRFNKSQQDAFLPA 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G ++ IGATTENPSF + LLSR RV L PL+ D+ +LL+RA+ D + +
Sbjct: 130 LEKGDLILIGATTENPSFEVNAALLSRARVFVLKPLQHDDIVLLLQRALSD-----PRGL 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ +V+ +A++ L GDARVAL L++ TA + P+ E
Sbjct: 185 ADQKPDVSQEALDHLAQLAQGDARVALGNLQLVVETAKGK-PIDEAA------------- 230
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ Q K L YD+ EEHYN+ISA KS+RG++ D A+YWLARM+E GE
Sbjct: 231 ---------ISQTLQQKALRYDKGAEEHYNVISAFIKSVRGSNPDGALYWLARMIEAGED 281
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+IARRLV A+ED+G ADP L A+S QA HF+GMPE +ILAQ YLA APKS
Sbjct: 282 PLFIARRLVILAAEDIGNADPRGLQLAISAQQAVHFVGMPEGRIILAQATTYLASAPKSN 341
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFL 538
+ Y + A +R S G E VPLHLRNAPTKLMKE+ YGK Y Y D+P+ Q +L
Sbjct: 342 ASYLGIDTALAEVRRS-GPLE-VPLHLRNAPTKLMKELDYGKDYQYAHDNPTGFVAQDYL 399
Query: 539 PPSLEGYKF 547
P L G +F
Sbjct: 400 PDQLHGSEF 408
>gi|357604316|gb|EHJ64131.1| werner helicase interacting protein [Danaus plexippus]
Length = 538
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/454 (44%), Positives = 279/454 (61%), Gaps = 44/454 (9%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
++ ST V PL+E MRP + D+VGQ S+L S + +++P++I WGPPG
Sbjct: 107 NIKSTAKTSVKSIPLAESMRPNCLEDIVGQIESFGAGSMLYSMLIKSKIPNMILWGPPGC 166
Query: 170 GKTTLAKAIVNSVAV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVH 227
GKT+LA + N + +FV LSA SG+ DV++ V+ A+ + ++TVLF+DE+H
Sbjct: 167 GKTSLANVVANICKEQPNLRFVKLSATMSGINDVKEVVKVAKN-EAQFKRQTVLFMDEIH 225
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
RFNK QQD+FLP +E+G+I IGATTENPSF L LLSRCRV+ L+ L DV +L+R
Sbjct: 226 RFNKLQQDTFLPHVENGTITLIGATTENPSFSLNNALLSRCRVVVLSKLSVDDVTQILQR 285
Query: 288 AV-------------DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
A+ +VN G+ K R ++ ++I +L DGDARVAL+ALE+
Sbjct: 286 AILRNDLATIIDNSNKEVNGGVQK-----RCRISLESIRWLAEVSDGDARVALSALEL-- 338
Query: 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISA 394
T A P +++L+D K + H+ YDR GEEHYN+ISA
Sbjct: 339 -TLAAGTPD-------------------TIISLEDLKNGIKRTHMLYDRTGEEHYNIISA 378
Query: 395 LHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQAC 454
+HKS+R D +AA+YW R L GGE PLY+ARRLVR A ED+GLADP AL +AV+C Q C
Sbjct: 379 MHKSIRAGDDNAALYWSTRALHGGEDPLYVARRLVRAACEDIGLADPNALVEAVACLQGC 438
Query: 455 HFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKL 514
+GMPEC+V++AQC LA A KS +Y+A+ QK ++E+ G VPLHLRNAPTKL
Sbjct: 439 QLIGMPECDVLVAQCAVRLARADKSREVYKAMTRVQKALKEARGPLPSVPLHLRNAPTKL 498
Query: 515 MKEIGYGKGYIYTPDDPSAKQSFLPPSLEGYKFL 548
MK++GY KGY D S +++P +E F
Sbjct: 499 MKDLGYAKGYNLHHKDVSG-LTYMPEGMENENFF 531
>gi|225872629|ref|YP_002754086.1| recombination factor protein RarA [Acidobacterium capsulatum ATCC
51196]
gi|225792545|gb|ACO32635.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
Length = 448
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/427 (49%), Positives = 269/427 (62%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ GQ HLL LR + + S+IFWGPPG GKTTLAK + +
Sbjct: 20 PLAERMRPRTLDEFRGQQHLLGLGKPLRVQIERDDAASMIFWGPPGVGKTTLAKIVAETT 79
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F+ SAV SG+K+++ + DA K + RT+LFVDE+HRFN++QQD+FLP +E
Sbjct: 80 HAS--FIEFSAVLSGIKEIKQVMADAEKASTYGS-RTILFVDEIHRFNRAQQDAFLPYVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF + LLSRCRV TL L D+ LL+RA D GL G
Sbjct: 137 RGTIRLIGATTENPSFEVNAALLSRCRVYTLQALTEDDLVSLLERAAADRERGL----GN 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + DA+ + GDAR ALNALE++A A R +E+
Sbjct: 193 MGVTFDADALALIADYSSGDARNALNALEVAAKLAQSR----------EENPR------- 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V+ + A+EA Q + L YD+ GEEHYNLISALHKS+R +D DAA+YWL RML+ GE +
Sbjct: 236 --VSRELAQEALQQRVLLYDKQGEEHYNLISALHKSVRNSDPDAALYWLGRMLQAGEDRM 293
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A EDVGLA P ALN +S A FLGMPE ++ LAQ V YLALAPKS ++
Sbjct: 294 YVARRVVRMAVEDVGLASPEALNLTLSARDAFEFLGMPEGDLALAQAVVYLALAPKSNAV 353
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A GA I + + E VPLHLRNAPT+LMKE+ YGKGY Y D+ A LPP
Sbjct: 354 YTAYGAVLGDIEAT--RAEPVPLHLRNAPTRLMKEMDYGKGYQYAHDEEGKVADMECLPP 411
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 412 SLAGRRY 418
>gi|374853163|dbj|BAL56078.1| recombination factor protein RarA [uncultured Acidobacteria
bacterium]
Length = 442
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/439 (47%), Positives = 275/439 (62%), Gaps = 30/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP + ++VGQ L+ P LR + +RL S+I WGPPG+GKTTLA+ I +
Sbjct: 21 APLADRMRPRTLEEIVGQADLIGPGKPLRRLIERDRLVSMILWGPPGSGKTTLARVIAHH 80
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V SAV ++++R A+ A K+R +RT+LFVDEVH N++QQD+FLP +
Sbjct: 81 TKA--HVVRFSAVLGTIREIRQAMLMAEKMRRAQGRRTILFVDEVHHLNRAQQDAFLPFV 138
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G +VFIGATTENPSF +I PLLSRC+V L PL +V +L+RA+ D GL G
Sbjct: 139 ERGDVVFIGATTENPSFQVIAPLLSRCQVFVLQPLSEAEVLTILRRALADEERGL----G 194
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
RVE+ + + + GDARVALN LE++ +A E +DG
Sbjct: 195 RLRVEIEERLLGAIAAYACGDARVALNVLEMAVHSA--------------EPRADGT--- 237
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT + +E + L YD++GEEHYNLISA KS+R +DADAA+YWLARMLE GE P
Sbjct: 238 -LRVTEEIVREIIRRPLLFYDQSGEEHYNLISAFIKSVRHSDADAALYWLARMLEAGEDP 296
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARRLV ASED+GLADP AL AV+ A HF+G+PE ++L Q YLA APKS +
Sbjct: 297 LFIARRLVILASEDIGLADPHALVHAVAAMHAVHFVGLPEAKLVLTQAALYLARAPKSNA 356
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT----PDDPSAKQSF 537
+ RA AA++ +RE E VPLHLRN T LM+++GYG+GY+Y P P +
Sbjct: 357 VLRAYQAAERDVREH--PREPVPLHLRNPVTDLMRDLGYGRGYVYIHDHEPGAPETEMPC 414
Query: 538 LPPSLEGYKFLDWPKSNTT 556
LP SL G K+ + S T
Sbjct: 415 LPESLRGRKYYEEEVSAPT 433
>gi|377556013|ref|ZP_09785736.1| Recombination ATPase [Lactobacillus gastricus PS3]
gi|376168751|gb|EHS87479.1| Recombination ATPase [Lactobacillus gastricus PS3]
Length = 445
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/404 (49%), Positives = 267/404 (66%), Gaps = 29/404 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ R+RP +++ VGQ+HL+ P LR + ++L S+IFWGPPG GKTTLA+ I
Sbjct: 14 NAPLASRVRPRDLDHFVGQEHLVGPGKFLREMIEKDQLSSMIFWGPPGVGKTTLAEIIAR 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
FV SAV +G+K++R ++ A R + RT++F+DE+HRFNK+QQD+FLP
Sbjct: 74 QT--KSHFVTFSAVMNGIKEIRKIMQAAENDR-QVGIRTIVFIDEIHRFNKAQQDAFLPY 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSR RV L PL D+ LL + + + ++
Sbjct: 131 VEKGSIILIGATTENPSFEINSALLSRTRVFMLKPLSDQDLMKLLHQVLSE-----PQAF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G +V + + + + +GDAR ALN LE+ I + + V+Q
Sbjct: 186 GEIKVSITDELLHEIAIYSNGDARSALNTLEMLVINSDMH---DHQVTVDQN-------- 234
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L L D K + YD+ GEEHYN+ISALHKSMR +D D+AIYWL+RML+GGE
Sbjct: 235 --LLAELTDHKTQY------YDKDGEEHYNIISALHKSMRNSDVDSAIYWLSRMLDGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASED+GLAD ALN A++ +QAC FLG+PEC+V L QCV YLAL+PKS
Sbjct: 287 PLYIARRLVRFASEDIGLADNNALNLAINTFQACQFLGLPECDVHLTQCVIYLALSPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
+ Y+A A +K I+E++ NE VP+ LRN TKLM+E+GYGKGY
Sbjct: 347 ATYQARVAVKKDIKETI--NEPVPMQLRNGTTKLMREMGYGKGY 388
>gi|227892533|ref|ZP_04010338.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
gi|227865654|gb|EEJ73075.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
Length = 441
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/431 (46%), Positives = 274/431 (63%), Gaps = 35/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL++R+RP ++++ VGQ L+ +LR + +++PS+I WGPPGTGKTTLA+ I
Sbjct: 15 NTPLADRVRPQSLDEFVGQKDLIGKGKILRELIEKDKVPSLILWGPPGTGKTTLAEIIAK 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F+ SAVTS +KD+R +E+A R + ++T++F+DE+HRFNK+QQD+FLP
Sbjct: 75 HTKAH--FITFSAVTSSIKDIRKIMEEAESNR-QFGEKTIVFIDEIHRFNKAQQDAFLPF 131
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI IGATTENPSF + + LLSR +V L+ L D+ +LLKRA+ + N
Sbjct: 132 VEQGSITLIGATTENPSFEVNSALLSRAKVFVLHSLSTEDIVLLLKRAIKNPN-----GF 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++++ + + + +GDAR +LN LEI+ + K+ Q
Sbjct: 187 PGLNIKISDENLHLIAEFGNGDARSSLNTLEIAVLNG---------KKSGQN-------- 229
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
V +D+ KE K L YD+ GEEHYNLISALHKSMR +D +AA+YW+ RML+GG
Sbjct: 230 ----VVVDEQILKELMNTKSLRYDKKGEEHYNLISALHKSMRNSDVNAAVYWVNRMLDGG 285
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARRLVRFASEDVGLAD +LN A++ +QAC ++GMPEC V L +CV YLA PK
Sbjct: 286 EDPLYIARRLVRFASEDVGLADTNSLNVAINTFQACKYIGMPECGVHLTECVIYLACTPK 345
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQS 536
S S+Y A A+K I+ + N VPL +RN TKLMK++ YGK Y Y D P
Sbjct: 346 SNSVYIAQQEAEKAIKRT--GNLPVPLQIRNPTTKLMKDLNYGKDYQYAQDAPDKLTNMK 403
Query: 537 FLPPSLEGYKF 547
PP LEG +F
Sbjct: 404 TFPPELEGSEF 414
>gi|269836458|ref|YP_003318686.1| AAA ATPase [Sphaerobacter thermophilus DSM 20745]
gi|269785721|gb|ACZ37864.1| AAA ATPase central domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 460
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/431 (48%), Positives = 284/431 (65%), Gaps = 33/431 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL++RMRP +++ VGQ+ ++ P +LLR A+ +RL S+I WGPPG+GKTTLA+ I
Sbjct: 15 RAPLADRMRPRTLDEFVGQEQVVGPGTLLRRAIEQDRLSSLILWGPPGSGKTTLARII-- 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +FV +SAV++GV D+R V++A +RT+LF+DE+HRFN++QQD+ LP
Sbjct: 73 ATVTKAEFVQVSAVSAGVADLRREVKEASDRLGMHGRRTILFIDEIHRFNRAQQDAILPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENPSF + +PLLSR RV+ L L V ++ RA++D GL
Sbjct: 133 VEDGTIILIGATTENPSFEVNSPLLSRSRVIVLKALDDDAVRTIVLRALEDPERGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG + ++ A++ L + +GDAR ALN LE++++ A V +E
Sbjct: 189 GGQGLRIDDSALDLLVNLANGDARFALNTLEMASVGAENGVIGRE--------------- 233
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
EA + YDRAG+ HY+ ISALHKS+RG+D DAA+YWLARMLE G+
Sbjct: 234 --------QVAEAAYQRAGVYDRAGDAHYDTISALHKSIRGSDPDAALYWLARMLERGDD 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRLVR ASED+GLADP AL AV+ QA HFLGMPE + LA+ YLA APKS
Sbjct: 286 PLYVARRLVRAASEDIGLADPQALTVAVAAQQAVHFLGMPEGALALAEAAVYLATAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFL 538
++YRA GAA + +R + +NE VP+HLRNAPT+LMKE+GYG Y Y D A +Q L
Sbjct: 346 ALYRAYGAAAEDVRRT--RNEPVPIHLRNAPTRLMKELGYGAEYRYAHDYDEAIVEQQHL 403
Query: 539 PPSLEGYKFLD 549
P +L G ++ +
Sbjct: 404 PDNLVGRRYYE 414
>gi|402828361|ref|ZP_10877252.1| MgsA AAA+ ATPase, C-terminal domain protein [Slackia sp. CM382]
gi|402286962|gb|EJU35424.1| MgsA AAA+ ATPase, C-terminal domain protein [Slackia sp. CM382]
Length = 448
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/428 (47%), Positives = 277/428 (64%), Gaps = 32/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++VVGQ HL+ P +LR + S+++ S+IFWGPPG GKTT+A+ + +
Sbjct: 21 PLAARLRPRSLDEVVGQQHLIGPGKVLRRIIESDQVSSMIFWGPPGVGKTTIARVVADQT 80
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAVTSG+K++R +++A R +RT++FVDE+HRFNK+QQD+FLP +E
Sbjct: 81 EA--RFIDFSAVTSGIKEIRTIMQEADAHR-GLGRRTIVFVDEIHRFNKAQQDAFLPFVE 137
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF + LLSRC+V L L +DV LL+RA+ D + G
Sbjct: 138 KGAITLIGATTENPSFEVNGALLSRCKVFVLKALTENDVVKLLERALSD-----ERGFGD 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + D + + +GDAR AL+ LE++ + DE DG +
Sbjct: 193 ADVRIEDDLLHAIALFSNGDARSALSTLEMATLNG---------------DEQDG----I 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + + L YD+ G+EHYN+ISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 234 IAVTSDTVAQCTSNRRLLYDKDGDEHYNIISALHKSMRNSDPDAAVYWLARMLESGEDPL 293
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+ RFA+ED+GLAD ALN AV+ + ACHF+GMPEC+V L++ V YL+LAPKS S
Sbjct: 294 YIARRITRFAAEDIGLADTNALNVAVNAFHACHFIGMPECSVHLSEAVIYLSLAPKSNSS 353
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+K ++ E VPL +RNAPT+LMK++GYGKGY + +A LP
Sbjct: 354 YIAYEHAKKDALTTMA--EPVPLVIRNAPTRLMKDLGYGKGYKLAHHEEHKVAAGMRCLP 411
Query: 540 PSLEGYKF 547
SL G +
Sbjct: 412 DSLAGRTY 419
>gi|117924970|ref|YP_865587.1| recombination factor protein RarA [Magnetococcus marinus MC-1]
gi|117608726|gb|ABK44181.1| Recombination protein MgsA [Magnetococcus marinus MC-1]
Length = 447
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/428 (49%), Positives = 273/428 (63%), Gaps = 28/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++ ++VGQ+ L +L A+CS +PS+I WGPPG GKTT+A+ I
Sbjct: 12 APLAERMRPRDLAELVGQEELADEGRILHEALCSGHIPSMILWGPPGCGKTTIARMIATQ 71
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V + +F LSAV +GVK+VR V+ AR+ RV T+LFVDE+HRFNK+QQD+FLP +
Sbjct: 72 VTL--RFESLSAVLAGVKEVRLVVDRAREARVLGQG-TILFVDEIHRFNKAQQDAFLPYV 128
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L LLSRCRV+ L PL + LL+RA+ D GL +
Sbjct: 129 ESGDIILIGATTENPSFELNGALLSRCRVVELKPLHEAALVTLLQRALVDQERGLER--- 185
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ V +A++ + GD R ALN LE + + A + V ++
Sbjct: 186 -YKLAVEPEALQHMAQLAAGDGRYALNLLE-TFVELAAKSGVARGSQL------------ 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
TL+ K + Q + YD+AG+ HYNLISALHKS+RG+D DAA+YWLARMLEGGE+
Sbjct: 232 ----TLERLKNSLQRRAALYDKAGDGHYNLISALHKSLRGSDVDAALYWLARMLEGGEEG 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRLVRFA+EDVG ADP AL+ A+ A HFLG PE + LAQCV YLA APKS S
Sbjct: 288 LYIARRLVRFATEDVGNADPRALSLAMDARDAYHFLGAPEGELALAQCVVYLATAPKSNS 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A AA+K ES P H+ NAPT M+ +GYG GY Y D + Q +LP
Sbjct: 348 VYTAFKAARKRAIESGAM--APPKHILNAPTATMQALGYGVGYQYAHDYEEGFVAQQYLP 405
Query: 540 PSLEGYKF 547
+L+G +F
Sbjct: 406 DALQGERF 413
>gi|423403565|ref|ZP_17380738.1| hypothetical protein ICW_03963 [Bacillus cereus BAG2X1-2]
gi|401647709|gb|EJS65312.1| hypothetical protein ICW_03963 [Bacillus cereus BAG2X1-2]
Length = 446
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/403 (47%), Positives = 263/403 (65%), Gaps = 29/403 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++ VGQ HL+ LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 15 APLASRMRPTDLDHFVGQKHLVGDGKFLREMIEKDQVTSMIFWGPPGVGKTTLAEIIAKK 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
KF+ SAV +G+K++R + +A + R + +RT++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--KSKFITFSAVMNGIKEIRKIMNEAEENR-QFGERTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + + LLSR RV L L D+ LL+ + ++
Sbjct: 132 EKGSIILIGATTENPSFEVNSALLSRTRVFVLKQLTIDDIVELLQGVLK-----FPQAFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V + + + + +GDAR A+N LE+ I + +
Sbjct: 187 DLEVTIKDEMLRQIAIFSNGDARTAINTLEMLVINSDI-------------------DAN 227
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A +T D +E K YD+ GEEHYN+ISALHKSMR +D D+AIYWL RM++GGE P
Sbjct: 228 KANITDDLLEELLDKKMAYYDKTGEEHYNIISALHKSMRNSDVDSAIYWLGRMIDGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YIARRL+RFASED+GLAD ALN +++ +QAC ++G+PEC++ L QCV YL LAPKS +
Sbjct: 288 IYIARRLIRFASEDIGLADNNALNLSINVFQACRYIGLPECDIHLTQCVVYLTLAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
IY+A A QK I++++ NE VPLHLRNA TKLMKE+GYGKGY
Sbjct: 348 IYKARTAVQKDIKQTI--NEPVPLHLRNATTKLMKEVGYGKGY 388
>gi|158522144|ref|YP_001530014.1| recombination factor protein RarA [Desulfococcus oleovorans Hxd3]
gi|158510970|gb|ABW67937.1| AAA ATPase central domain protein [Desulfococcus oleovorans Hxd3]
Length = 459
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/427 (48%), Positives = 269/427 (62%), Gaps = 30/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + D+ GQ H+ P+SLLRSA+ L S+I WGPPG GKTTLA+ +
Sbjct: 18 PLADRMRPEKLEDLAGQPHVTGPDSLLRSALEKGTLFSMILWGPPGCGKTTLARILAGMT 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+Y V +SAV SGVK++R+ VE AR+ R + K T+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 78 GAAY--VQISAVLSGVKEIREVVEAARRRRGEFQKDTILFVDEVHRFNKSQQDAFLPHVE 135
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I L+SRCR++ LNP+ V +L RA+ D GL K
Sbjct: 136 SGLVTLIGATTENPSFEVIPALMSRCRLIVLNPVPEEAVRQVLLRALADTEKGLGK---- 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ +A+ L + DGD R ALN LE +A+ V
Sbjct: 192 MGLEIEPEALAHLAALADGDVRTALNNLEAAALLRPAGTGVT------------------ 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL ++A K L YD++GEEHYNLISALHKS+RG+D DAA+YWL RML GGE P
Sbjct: 234 --ITLAGVEQALDKKALLYDKSGEEHYNLISALHKSLRGSDPDAAVYWLERMLSGGEDPF 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YI RR+VRFASED+G ADP AL ++ +A FLG PE ++ + Q YLA APKS S+
Sbjct: 292 YILRRMVRFASEDIGNADPSALGVTLNAMEAYRFLGSPEGDLAIVQAAVYLATAPKSNSL 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y G ++V++++ VP H+RNAPT LMK++GYGKGY Y D A Q +LP
Sbjct: 352 YTMHGEIKRVVKQT--GYLPVPKHIRNAPTNLMKDLGYGKGYKYAHDFKEAFVPQDYLPE 409
Query: 541 SLEGYKF 547
L G F
Sbjct: 410 KLAGSLF 416
>gi|295098785|emb|CBK87874.1| Recombination protein MgsA [Eubacterium cylindroides T2-87]
Length = 445
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/408 (49%), Positives = 268/408 (65%), Gaps = 31/408 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + + VGQ L+ LL + ++++ S+IFWGPPG GKTTLA+ I +
Sbjct: 15 PLADRMRPETLEEYVGQHQLVEKGKLLWQMIENDQVTSMIFWGPPGVGKTTLARIIAHQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
SY FV SAVTSG+K++++ ++ A + +V K T+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 75 E-SY-FVDFSAVTSGIKEIKEVMKQADQRKVLGQK-TILFVDEIHRFNKAQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + + LLSRCRV LN L+ D+E L+ RA+ SK +G
Sbjct: 132 KGSIILIGATTENPSFEINSALLSRCRVFVLNALEQKDLEDLIFRAISS-----SKGLGN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R++++ + IE + + GDAR LN LE+ + SD +V
Sbjct: 187 LRIDISQEDIEAIAAFSGGDARFCLNTLEMVVYNSP----------------SDVNGIHV 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ L K+ Q + L YD+ GEEHYN+ISALHKSMR +D A+IYWLARMLE GE PL
Sbjct: 231 SKEIL---KQCLQKRSLLYDKKGEEHYNIISALHKSMRNSDVQASIYWLARMLEAGEDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VRF+SED+G+AD AL V+ YQACH+LGMPECNV L V Y ALAPKS S+
Sbjct: 288 YVARRIVRFSSEDIGMADSRALEICVAAYQACHYLGMPECNVHLTHAVTYCALAPKSNSL 347
Query: 483 YRA-LGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
A L A + I+ E VPL +RNAPTKLMKE+ YGK Y Y+ D
Sbjct: 348 EVAYLSAKEDAIK---TLQEPVPLQIRNAPTKLMKELNYGKDYEYSHD 392
>gi|320106653|ref|YP_004182243.1| AAA ATPase [Terriglobus saanensis SP1PR4]
gi|319925174|gb|ADV82249.1| AAA ATPase central domain protein [Terriglobus saanensis SP1PR4]
Length = 445
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/428 (48%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL ERMRP +++ GQ HL+ + LR + + S+IFWGPPGTGKTTLAK +
Sbjct: 21 APLPERMRPRTLDEFAGQTHLVGKDGPLRLQLERDDPASMIFWGPPGTGKTTLAKIVARM 80
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S F+ SAV SG+K+++ + DA K RT+LF+DE+HRFNK+QQD+FLP +
Sbjct: 81 TQAS--FIEFSAVMSGIKEIKQVMVDAEKA-AAMGSRTILFIDEIHRFNKAQQDAFLPYV 137
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + LLSRCRV TL L +V +L++RA+ D GL G
Sbjct: 138 ERGTLRLIGATTENPSFEINAALLSRCRVYTLRGLSESEVIVLMQRALADEERGL----G 193
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++E + S GDAR ALNALE++ A+ R DG
Sbjct: 194 AMHLGTAEGSLEMIASYASGDARYALNALEMATRIASAR--------------GDGA--- 236
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + EA Q + L YD+ GE+HY+LISALHKS+R +DADAA+YWL RMLE GE
Sbjct: 237 ---LTKETVGEALQQRVLLYDKRGEQHYDLISALHKSVRNSDADAALYWLTRMLEAGEDA 293
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+Y+ARR+VR A ED+GLA P ALN +S A HFLG PE + LAQ V YLALAPKS +
Sbjct: 294 MYVARRVVRMAVEDIGLAAPEALNLCLSARDAMHFLGSPEGELALAQAVVYLALAPKSNA 353
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
+Y A A + + + E VPLHLRNAPTKLMKE+ YGKGY Y D A LP
Sbjct: 354 VYMAYAAVKADVASTAA--EPVPLHLRNAPTKLMKELDYGKGYEYAHDVEGKVAAMECLP 411
Query: 540 PSLEGYKF 547
PSL G ++
Sbjct: 412 PSLAGRRY 419
>gi|366090315|ref|ZP_09456681.1| recombination factor protein RarA [Lactobacillus acidipiscis KCTC
13900]
Length = 442
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/431 (45%), Positives = 284/431 (65%), Gaps = 31/431 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ R+RP + + GQ HLL+P +LR + +++L S+IFWGPPG GKTTLA+ I
Sbjct: 14 NAPLAYRVRPQKLAEFFGQTHLLAPGKVLRELIDNDQLTSMIFWGPPGVGKTTLARII-- 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ SAVT+ +KD++ ++DA + R + +RT++FVDE+HRFNK+QQD+FLP
Sbjct: 72 AAQTKAHFLTFSAVTTSIKDIKSIMKDAEEAR-EMGERTIVFVDEIHRFNKAQQDAFLPY 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF L + LLSRC+V L LKP ++ LLK A++ S+
Sbjct: 131 VEKGSIILIGATTENPSFELNSALLSRCKVFVLQELKPDELVDLLKHALNS-----SQGF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ ++ + ++ + + +GD R ALN LE++ + +E K+V + ++
Sbjct: 186 PELAIHISQETLQEIAAFANGDGRNALNTLEMAILNGK-----REGKDVTVDQQT----- 235
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ K L YD+ GEEHYN+ISALHKSMR +D +AA+YWL+R+++GGE
Sbjct: 236 ---------LHQLLGKKSLRYDKKGEEHYNIISALHKSMRNSDVNAAVYWLSRVIDGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRLVRFASED+GLAD ALN AV+ +QAC F+G+PEC+V L + V YLALAPKS
Sbjct: 287 PLYIARRLVRFASEDIGLADTNALNVAVNVFQACQFIGLPECDVHLTEAVIYLALAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSFL 538
+ Y+A ++K +R S G N VPL +RNAPTKLM ++GYG+ Y Y D
Sbjct: 347 AAYKARLTSKKDVR-SYG-NLLVPLQIRNAPTKLMDDLGYGENYQYAHKSKDKLTSMETA 404
Query: 539 PPSLEGYKFLD 549
PP ++G+++ +
Sbjct: 405 PPEIKGHEYYE 415
>gi|148657906|ref|YP_001278111.1| recombination factor protein RarA [Roseiflexus sp. RS-1]
gi|148570016|gb|ABQ92161.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
Length = 505
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/446 (47%), Positives = 287/446 (64%), Gaps = 29/446 (6%)
Query: 106 KTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWG 165
KT D AL+ APL+ RMRP +++ VGQDH++ +LR A+ ++ L SII WG
Sbjct: 6 KTLFDTQREEALNR-QAPLAARMRPRTLDEFVGQDHIIGEGKVLRRAISNDALFSIILWG 64
Query: 166 PPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225
PPG+GKTTLA+ I ++ + F LSAV++GV D+R V++A+ +RT++F+DE
Sbjct: 65 PPGSGKTTLARIIADTT--NAHFEQLSAVSAGVADLRRVVKEAQDRLGMFQQRTIVFIDE 122
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+HRFNK+QQD+ LP +EDG+I+ IGATTENPSF + L SR RV L L + +++
Sbjct: 123 IHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVNPALRSRARVFVLEALTDDQIGVIV 182
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKE 345
RA+ D GL G V + DA +L + +GDAR ALNALE +A+ V K
Sbjct: 183 DRALSDTERGL----GELNVLLAADARGYLINMSNGDARTALNALEAAALAKPPGVGGKR 238
Query: 346 VKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD 405
L+T++D ++A Q + + YD+ GE HY+ ISALHKS+R +D D
Sbjct: 239 ------------------LITVEDIRDALQSRAVRYDKNGELHYDAISALHKSVRDSDPD 280
Query: 406 AAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVI 465
AA+YWL RML+GGE PLYIARR+VR A ED+GLADP AL ++ QA HFLG PE ++
Sbjct: 281 AALYWLGRMLDGGEDPLYIARRVVRMAIEDIGLADPQALPLTIAAQQAVHFLGQPEGDLA 340
Query: 466 LAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI 525
LAQ V YLA APKS ++Y A AA K + E+ +NE VPLHLRNAPT LMK +GYG+GY
Sbjct: 341 LAQAVVYLAQAPKSNAVYTAYAAALKDVAET--RNEPVPLHLRNAPTPLMKGLGYGRGYQ 398
Query: 526 YTPDDPSAK--QSFLPPSLEGYKFLD 549
Y DD A+ Q PP+L+G ++ +
Sbjct: 399 YAHDDDDARVDQEHFPPNLQGRRYYE 424
>gi|325282636|ref|YP_004255177.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP]
gi|324314445|gb|ADY25560.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP]
Length = 429
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/427 (50%), Positives = 269/427 (62%), Gaps = 41/427 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ER+RP + +VVGQ HLL P L + S RLPS+I WGPPG GKTTLA+ +
Sbjct: 6 PPAPLAERLRPRTVAEVVGQTHLLGPGKPLTRLLNSGRLPSLILWGPPGVGKTTLARLVA 65
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
V F+ LSAV++GVKDVR+AV +A R + K TVLF+DE+HRFNK+QQD+ LP
Sbjct: 66 GEV--GSHFIGLSAVSAGVKDVREAVLEAEARRGRGQK-TVLFLDEIHRFNKAQQDALLP 122
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF + L SR R L L L D+ LL+RA+ D +
Sbjct: 123 HVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALSKDDIRALLERALTD-----PRG 177
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ G R+E +A+E L DGD R AL LE +A+ A +
Sbjct: 178 LEGVRME--PEALELLARLADGDGRRALGTLEAAAVLA---------------------N 214
Query: 360 PYVALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
P VT + EAF KHL A D+ GE+ YNLISALHKS+RG+ DA++YWLARMLEGG
Sbjct: 215 P----VTEEAVTEAF-GKHLPAMDKGGEDFYNLISALHKSVRGSHVDASLYWLARMLEGG 269
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
PLY+ARR+VR A+EDVGLADP AL AV+ FLG PE ++ LAQ V YLALAPK
Sbjct: 270 ADPLYVARRIVRIAAEDVGLADPQALRLAVAARDTAEFLGRPEGDLALAQAVVYLALAPK 329
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QS 536
S S+Y A + ++E G+ VPLHLRNAPT+LMK GYGKGY Y DDP+ Q+
Sbjct: 330 SNSVYTAWKRVVRAVQE--GETLPVPLHLRNAPTELMKGQGYGKGYAYYFDDPAGSFAQA 387
Query: 537 FLPPSLE 543
+LP E
Sbjct: 388 YLPQGAE 394
>gi|227533349|ref|ZP_03963398.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227189020|gb|EEI69087.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 448
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/428 (47%), Positives = 272/428 (63%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL + +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 KA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V++ + + +GDAR+ALN LE++ A E+ G V
Sbjct: 185 QKVKIGKKLLAQIADFANGDARIALNTLEMAVTNA----------------ETKGG---V 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 226 VTVTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVG+AD AL ++ YQAC F+GMPEC V L V YLALAPKS ++
Sbjct: 286 YVARRLVRFASEDVGMADSRALEITIAVYQACQFIGMPECTVHLTHAVTYLALAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y A A+K E++ E VPL +RN T LM+++GYGK Y Y T D + Q+ +P
Sbjct: 346 YTAYEGAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT-MP 402
Query: 540 PSLEGYKF 547
+L G +
Sbjct: 403 DNLIGKTY 410
>gi|336429175|ref|ZP_08609143.1| hypothetical protein HMPREF0994_05149 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336003091|gb|EGN33182.1| hypothetical protein HMPREF0994_05149 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 442
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/431 (45%), Positives = 273/431 (63%), Gaps = 30/431 (6%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
V + PL+ R+RP + + VGQ +L+ +LR + + + S+IFWGPPG GKTTLA+ I
Sbjct: 12 VMYDPLASRLRPSGLEEFVGQKNLVGEGKVLRRLIDQDMVSSMIFWGPPGVGKTTLARII 71
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
S +F+ SAVTSG++++++ + A R K+T++FVDE+HRFNK+QQD+FL
Sbjct: 72 ARSTKA--EFIDFSAVTSGIREIKEVMNQAESAR-HMGKKTIVFVDEIHRFNKAQQDAFL 128
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E GSI+ IGATTENPSF + LLSRC+V L L +V LL A+ NG
Sbjct: 129 PFVEKGSIILIGATTENPSFEINAALLSRCKVFVLQALSVEEVVQLLHHALK-AGNGF-- 185
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G ++E+ D IE + +GD R ALN LE+ + ++ DG
Sbjct: 186 --GNQKIEIEEDMIEMIARFANGDGRTALNTLEMVILNGEIK--------------PDGT 229
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+ ++T + ++ K L YD+ GEEHYNLISALHKSMR D DAA+YWL+RMLE G
Sbjct: 230 T----VITREILEQCTSKKSLLYDKKGEEHYNLISALHKSMRNTDPDAAVYWLSRMLEAG 285
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLY+ARRL+RFASEDVGLAD AL AV+ YQACHF GMPECNV LA V YL++APK
Sbjct: 286 EDPLYVARRLIRFASEDVGLADSNALLVAVAAYQACHFNGMPECNVNLAHAVVYLSMAPK 345
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQS 536
S ++Y+A ++ + + E VPL +RNAPT+LM+E+ YG+GY+Y ++
Sbjct: 346 SNALYKAYEDCKEDAVKMLA--EPVPLQIRNAPTRLMEELHYGEGYVYAHNTEEKVTAMR 403
Query: 537 FLPPSLEGYKF 547
LP SL+ ++
Sbjct: 404 CLPDSLQDKRY 414
>gi|191636983|ref|YP_001986149.1| recombination factor protein RarA [Lactobacillus casei BL23]
gi|385818682|ref|YP_005855069.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W]
gi|385821858|ref|YP_005858200.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II]
gi|409995826|ref|YP_006750227.1| replication-associated recombination protein A [Lactobacillus casei
W56]
gi|418009683|ref|ZP_12649472.1| AAA family ATPase [Lactobacillus casei Lc-10]
gi|190711285|emb|CAQ65291.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
BL23]
gi|327381009|gb|AEA52485.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W]
gi|327384185|gb|AEA55659.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II]
gi|406356838|emb|CCK21108.1| Replication-associated recombination protein A [Lactobacillus casei
W56]
gi|410555133|gb|EKQ29094.1| AAA family ATPase [Lactobacillus casei Lc-10]
Length = 448
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 272/428 (63%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL + +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 KA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V++ + + +GDAR+ALN LE++ A E+ G V
Sbjct: 185 QKVKIGKKLLAQIADFANGDARIALNTLEMAVTNA----------------ETKGG---V 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 226 VTVTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASED+G+AD AL ++ YQAC F+GMPEC V L V YLALAPKS ++
Sbjct: 286 YVARRLVRFASEDIGMADSRALEITIAVYQACQFIGMPECTVHLTHAVTYLALAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y A A+K E++ E VPL +RN T LM+++GYGK Y Y T D + Q+ +P
Sbjct: 346 YTAYEGAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT-MP 402
Query: 540 PSLEGYKF 547
+L G +
Sbjct: 403 DNLIGKTY 410
>gi|392948640|ref|ZP_10314245.1| recombination factor protein RarA, ATPase, AAA family
[Lactobacillus pentosus KCA1]
gi|392436145|gb|EIW14064.1| recombination factor protein RarA, ATPase, AAA family
[Lactobacillus pentosus KCA1]
Length = 445
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/439 (46%), Positives = 273/439 (62%), Gaps = 32/439 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RPVN++ GQDHLL P LLR + ++LPS+IFWGPPG GKTTLA+ I
Sbjct: 15 SPLAYRVRPVNLDGFKGQDHLLGPGKLLRQLIAEDQLPSLIFWGPPGVGKTTLAEIIAQQ 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ SAVTSG+K +R+ +++A R ++T++F+DE+HRFNK+QQD+FLP +
Sbjct: 75 T--QSHFITFSAVTSGIKAIREIMDEAEANR-DFGEKTIVFIDEIHRFNKAQQDAFLPYV 131
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI IGATTENPSF + LLSRC+VL L L + +L+ +D+ N
Sbjct: 132 ERGSITLIGATTENPSFEINAALLSRCKVLVLKALTTDALVAVLQGTLDNPN-----GFP 186
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + D ++ + +GDAR+ALN LE++ + + DG +
Sbjct: 187 DLTIHLQPDTLQLIAEFANGDARMALNTLEMAVLNG----------------DRDG---H 227
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + K L YD+ GEEHYN+ISALHKSMR +D DAAIYWL RML GGE P
Sbjct: 228 DVTITTAGLSQLINTKSLRYDKHGEEHYNIISALHKSMRNSDVDAAIYWLMRMLAGGEDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+RFASED+GLAD AL V+ +QAC +GMPEC+V L + V YLALAPKS +
Sbjct: 288 LYIARRLIRFASEDIGLADRQALPLTVAAFQACQMIGMPECDVNLTEAVTYLALAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSFLP 539
+Y A AAQ I+ + N VPL +RNAPTKLMK++GYG Y Y D + +P
Sbjct: 348 LYAAKSAAQADIKAT--GNLPVPLQIRNAPTKLMKDLGYGSDYQYAHDTTDKLTTMTTMP 405
Query: 540 PSLEGYKFLDWPKSNTTDK 558
P L + + + P S +K
Sbjct: 406 PELSAHHYYE-PTSQGQEK 423
>gi|126322073|ref|XP_001368463.1| PREDICTED: ATPase WRNIP1 isoform 2 [Monodelphis domestica]
Length = 677
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/447 (46%), Positives = 271/447 (60%), Gaps = 48/447 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + + +GQ+ ++ +LLRS + SN +PS+I WGPPG GKTTLA I N S
Sbjct: 253 PLADKMRPATLQEYIGQNKVVGQETLLRSLLESNEIPSLILWGPPGCGKTTLAYIIANNS 312
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 313 KKNSMRFVTLSATSAKTSDVRDVIKQAQNEKNFFKRKTILFIDEIHRFNKSQQ------- 365
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV------------ 289
NPSF + LLSRCRV+ L L ++ +L RAV
Sbjct: 366 -------------NPSFQVNAALLSRCRVIVLEKLSAEAMKTILMRAVSSLGLRVLDQGR 412
Query: 290 --DDVNNGLSKSVGGTRVE----VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV 343
D V++G S S + E + A+ L CDGDAR LN L++ A+ A +
Sbjct: 413 PTDSVSHGNSSSCSSSSSEPLVYIEDKAVNTLAYLCDGDARTGLNGLQL-AVQAKLGSRK 471
Query: 344 KEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND 403
K+ Q + L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D
Sbjct: 472 PFCKKTVQNYSGES-----VLITENDIKEGLQRSHILYDRAGEEHYNCISALHKSMRGSD 526
Query: 404 ADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECN 463
+A++YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL AV+ YQ CHF+GMPEC
Sbjct: 527 QNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTHAVAAYQGCHFIGMPECE 586
Query: 464 VILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKG 523
V+LAQCV Y A APKSI +Y A + +R G VP+HLRNAPT+LMK++GYGKG
Sbjct: 587 VLLAQCVVYFARAPKSIEVYNAYNNVKACLRNHQGPLPPVPMHLRNAPTRLMKDLGYGKG 646
Query: 524 YIYTP--DDPSAKQSFLPPSLEGYKFL 548
Y Y P DP +Q +L L G F
Sbjct: 647 YKYNPAYKDP-VEQEYLLEELRGIDFF 672
>gi|116493737|ref|YP_805471.1| recombination factor protein RarA [Lactobacillus casei ATCC 334]
gi|239630989|ref|ZP_04674020.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065310|ref|YP_003787333.1| helicase subunit of the Holliday junction resolvase-like ATPase
[Lactobacillus casei str. Zhang]
gi|417979545|ref|ZP_12620236.1| AAA family ATPase [Lactobacillus casei 12A]
gi|417982341|ref|ZP_12622999.1| AAA family ATPase [Lactobacillus casei 21/1]
gi|417985470|ref|ZP_12626054.1| AAA family ATPase [Lactobacillus casei 32G]
gi|417988452|ref|ZP_12628987.1| AAA family ATPase [Lactobacillus casei A2-362]
gi|417991818|ref|ZP_12632191.1| AAA family ATPase [Lactobacillus casei CRF28]
gi|417994846|ref|ZP_12635156.1| AAA family ATPase [Lactobacillus casei M36]
gi|417998074|ref|ZP_12638304.1| AAA family ATPase [Lactobacillus casei T71499]
gi|418000853|ref|ZP_12641025.1| AAA family ATPase [Lactobacillus casei UCD174]
gi|418012647|ref|ZP_12652342.1| AAA family ATPase [Lactobacillus casei Lpc-37]
gi|116103887|gb|ABJ69029.1| Recombination protein MgsA [Lactobacillus casei ATCC 334]
gi|239527272|gb|EEQ66273.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300437717|gb|ADK17483.1| Helicase subunit of the Holliday junction resolvase related ATPase
[Lactobacillus casei str. Zhang]
gi|410527254|gb|EKQ02126.1| AAA family ATPase [Lactobacillus casei 12A]
gi|410528498|gb|EKQ03350.1| AAA family ATPase [Lactobacillus casei 32G]
gi|410530270|gb|EKQ05051.1| AAA family ATPase [Lactobacillus casei 21/1]
gi|410535128|gb|EKQ09757.1| AAA family ATPase [Lactobacillus casei CRF28]
gi|410539576|gb|EKQ14103.1| AAA family ATPase [Lactobacillus casei M36]
gi|410541382|gb|EKQ15862.1| AAA family ATPase [Lactobacillus casei A2-362]
gi|410541862|gb|EKQ16328.1| AAA family ATPase [Lactobacillus casei T71499]
gi|410549071|gb|EKQ23247.1| AAA family ATPase [Lactobacillus casei UCD174]
gi|410556627|gb|EKQ30507.1| AAA family ATPase [Lactobacillus casei Lpc-37]
Length = 448
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 272/428 (63%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL + +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 KA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V++ + + +GDAR+ALN LE++ A E+ G V
Sbjct: 185 QKVKIGKKLLAQIADFANGDARIALNTLEMAVTNA----------------ETKGG---V 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 226 ITVTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASED+G+AD AL ++ YQAC F+GMPEC V L V YLALAPKS ++
Sbjct: 286 YVARRLVRFASEDIGMADSRALEITIAVYQACQFIGMPECTVHLTHAVTYLALAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y A A+K E++ E VPL +RN T LM+++GYGK Y Y T D + Q+ +P
Sbjct: 346 YTAYEGAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT-MP 402
Query: 540 PSLEGYKF 547
+L G +
Sbjct: 403 DNLIGKTY 410
>gi|354808067|ref|ZP_09041510.1| ATPase associated with various cellular activities family protein
[Lactobacillus curvatus CRL 705]
gi|354513442|gb|EHE85446.1| ATPase associated with various cellular activities family protein
[Lactobacillus curvatus CRL 705]
Length = 446
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/404 (48%), Positives = 268/404 (66%), Gaps = 29/404 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ R+RP +++ VGQ HL+ P LR + +++ S+IFWGPPG GKTTLA+ I
Sbjct: 14 NAPLANRVRPSDLDSFVGQKHLVGPGKFLREMIDKDQVTSMIFWGPPGVGKTTLAEIIAR 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A KF+ SA +G+K++R + +A + R + +RT++F+DE+HRFNK+QQD+FLP
Sbjct: 74 KTAS--KFITFSAAMNGIKEIRKIMNEAEENR-QLGERTIVFIDEIHRFNKAQQDAFLPY 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E GSI+ IGATTENPSF + + LLSR RV L L D+ LL+R + ++
Sbjct: 131 VEKGSIILIGATTENPSFEINSALLSRSRVFVLKQLTEADIIELLQRVLK-----APQAF 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V ++ + ++ + +GDAR ALN LE+ I + V+ + + DG
Sbjct: 186 PDLTVHISDELLKQVAIFSNGDARTALNILEMLVINSDVQ---------DHQVTVDG--- 233
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
D E K YD+ GEEHYN+ISALHKSMR +D D+AIYWL RM++GGE
Sbjct: 234 -------DLLGELLNKKTAYYDKDGEEHYNIISALHKSMRNSDVDSAIYWLGRMIDGGED 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P+YIARRLVRFASED+GLAD ALN A++ +QAC +G+PEC+V L QCV YL+LAPKS
Sbjct: 287 PIYIARRLVRFASEDIGLADNNALNLAMNVFQACQAIGLPECDVHLTQCVIYLSLAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
+ Y+A A QK I++++ +E VPLHLRNA TKLMKE+GYGKGY
Sbjct: 347 ATYKARTAVQKDIKKTI--DEPVPLHLRNAATKLMKEVGYGKGY 388
>gi|218282978|ref|ZP_03489080.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
gi|218216172|gb|EEC89710.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
Length = 453
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/418 (48%), Positives = 269/418 (64%), Gaps = 29/418 (6%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS ++ PL++RMRP +++ VGQ L++ +LL + +++ S+IFWGPPG GK
Sbjct: 4 DSLFSIQEDTRPLADRMRPETLDEYVGQKQLVAKGNLLWQMIEHDQVTSMIFWGPPGVGK 63
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TTLA+ I + SY FV SAVTSG+K++++ ++ A R K T+LFVDE+HRFNK
Sbjct: 64 TTLARIIAHQTK-SY-FVDFSAVTSGIKEIKEVMKQADTRRALGQK-TILFVDEIHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQD+FLP +E GSI+ IGATTENPSF + + LLSRCRV LN L D++ L+ RA+
Sbjct: 121 AQQDAFLPYVEKGSIILIGATTENPSFEINSALLSRCRVFVLNSLNTDDLKDLIIRAISS 180
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
SK +G ++ + + IE + + GDAR LN LE+ +
Sbjct: 181 -----SKGLGNLKIHITDEDIEAIAAFSGGDARFCLNTLEMVVYNSP------------- 222
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
E DG V+ D K+ Q + L YD+ GEEHYN+ISALHKS+R +D AA+YWL
Sbjct: 223 -SELDGIH-----VSQDILKQCLQKRSLLYDKKGEEHYNIISALHKSVRNSDVQAAVYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARMLE GE PLYIARR VR ASED+G+AD AL V+ YQACH+LG+PECNV L
Sbjct: 277 ARMLEAGEDPLYIARRFVRMASEDIGMADSRALEICVAAYQACHYLGVPECNVHLTHAAV 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
YLALAPKS ++ A A+ +++ Q VPLH+RNAPTKLMK++GY KGY Y+ D
Sbjct: 337 YLALAPKSNALEVAYNNAKSDALKTLDQ--PVPLHIRNAPTKLMKDLGYNKGYEYSHD 392
>gi|406992109|gb|EKE11516.1| hypothetical protein ACD_15C00066G0011 [uncultured bacterium]
Length = 392
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/426 (47%), Positives = 276/426 (64%), Gaps = 37/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++ +RP NI D GQ+ L+ S L A+ ++++PS+I WGPPG+GKTTLA I +S
Sbjct: 4 PLADLIRPKNIADFFGQEKLIGEKSYLFRAIKNDQIPSMILWGPPGSGKTTLAHIIASST 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F +SAV+SG K + + + A++ + K K T+LFVDE+HR+NKSQQD+ LP +E
Sbjct: 64 QSA--FYKISAVSSGKKVLLEIIGKAKENKSKQIK-TILFVDEIHRWNKSQQDALLPYVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++ IGATTENPSF + + L+SR RV L L P D+E ++KRA++ + +
Sbjct: 121 DGTVILIGATTENPSFEVNSALVSRTRVFVLQRLTPIDLERIVKRALEKIGHQ------- 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + D I+ L + +GDAR+ALN LE AI +++ +P +
Sbjct: 174 KKISIKSDTIKLLANLSNGDARMALNTLEACAI------------------QTNSVTPKL 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+E Q HL YD++GEEHYN+ISALHKSMRG + DA++YWLARM+EGGE PL
Sbjct: 216 I-------REVLQKSHLLYDKSGEEHYNIISALHKSMRGGNPDASVYWLARMIEGGEDPL 268
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLVRFASED+GLA+ AL A + + ACH LG PECNV L CV YLA + K IS
Sbjct: 269 FIARRLVRFASEDIGLANNSALLLANAVFDACHKLGYPECNVHLCHCVIYLAKSKKDISA 328
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPPSL 542
Y A A+ + E G N VPLHLRNAPTKLM+++ YGK Y YTP + S Q + P L
Sbjct: 329 YSAYNKAKNDV-EKFG-NLSVPLHLRNAPTKLMQDLEYGKNYKYTPLENSDDQKYFPLEL 386
Query: 543 EGYKFL 548
E K+L
Sbjct: 387 EERKYL 392
>gi|266624899|ref|ZP_06117834.1| replication-associated recombination protein A [Clostridium
hathewayi DSM 13479]
gi|288863218|gb|EFC95516.1| replication-associated recombination protein A [Clostridium
hathewayi DSM 13479]
Length = 440
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/426 (48%), Positives = 265/426 (62%), Gaps = 35/426 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL+ R+RP + + VGQ HLL +LR + + + S+IFWGPPG GKTTLA+ I N
Sbjct: 14 GPLASRLRPTGLEEFVGQKHLLGEGKVLRRIIDQDMVCSMIFWGPPGVGKTTLARIIANR 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S FV SAVTSG+K++++ + A + R RT++FVDE+HRFNK+QQD+FLP +
Sbjct: 74 TKAS--FVDFSAVTSGIKEIKEVMAQAERDR-HMGLRTLVFVDEIHRFNKAQQDAFLPYV 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E GSI+ IGATTENPSF + LLSRC+V L L+ D+ ILL A+ +G
Sbjct: 131 EKGSIILIGATTENPSFEINAALLSRCKVFVLQALQTDDLVILLHHALTS-----PLGLG 185
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R+ + D + + +GDAR ALN LE++ + E+ E+ +
Sbjct: 186 DQRIGITEDMLRMIAQFANGDARTALNTLEMAVLNG----------EISAEETT------ 229
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VT + ++ K L YD+ GEEHYNLISA HKSMR +D DAA+YWLARMLE GE P
Sbjct: 230 ---VTPEVLEQCTSRKSLLYDKNGEEHYNLISAFHKSMRNSDPDAALYWLARMLEAGEDP 286
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+RFASED+G+AD AL AVS YQACHF GMPECNV LA V YL++APKS S
Sbjct: 287 LYVARRLIRFASEDIGMADSQALTLAVSAYQACHFNGMPECNVNLAHTVIYLSMAPKSNS 346
Query: 482 IYRALGAAQKVIRESVGQN--EGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSF 537
Y A + RE E VPL +RNAPT LMKE+ YGKGY Y +D A
Sbjct: 347 AY----AGYEHCREDALHTLAEPVPLVIRNAPTGLMKELHYGKGYQYAHQTEDRIAAMQC 402
Query: 538 LPPSLE 543
+P SL+
Sbjct: 403 MPDSLK 408
>gi|284048963|ref|YP_003399302.1| AAA ATPase [Acidaminococcus fermentans DSM 20731]
gi|283953184|gb|ADB47987.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
20731]
Length = 439
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/423 (47%), Positives = 270/423 (63%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP +++ VGQ+ LL P +L + + +R+ S+IFWGPPG GKTTLA+ I ++
Sbjct: 14 PLAARLRPRTLDEFVGQEQLLGPGKILWNLIEEDRISSMIFWGPPGVGKTTLAQIIAHTT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ SAVTSG+K++R ++ A + R + RT++FVDE+HRFN++QQD+FLP +E
Sbjct: 74 RAN--FINFSAVTSGIKEIRTVMQRADENR-RFGARTIVFVDEIHRFNRAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF + LLSRC+V L L ++ +LKRA+ D + G
Sbjct: 131 KGAIILIGATTENPSFEVNGALLSRCKVFVLKALDEKAIKGILKRALTD-----PRGFGK 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + + + FL +GDAR AL LE+ + E + DG
Sbjct: 186 ETVHLAEEDLTFLARLSNGDARSALATLEMVVLNG--------------ERKPDGIHVSR 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ K+A L YD+ GEEHYNLISALHKSMR +D DAA+YWLARMLE GE PL
Sbjct: 232 ELIEQCTGKKA-----LLYDKTGEEHYNLISALHKSMRNSDPDAAVYWLARMLEAGEDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VRFASEDVGLAD L AV+ YQACHFLGMPEC+V L V YL++APKS ++
Sbjct: 287 YIARRVVRFASEDVGLADSRGLEIAVAAYQACHFLGMPECSVNLTHAVIYLSMAPKSNAM 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
A A+ R+ + NE VPL +RNAPT+LM E+GYGKGY Y D + A LP
Sbjct: 347 ELAYNEARDDARQHL--NEPVPLQIRNAPTRLMGELGYGKGYQYAHDTKEKMAAMQCLPD 404
Query: 541 SLE 543
L+
Sbjct: 405 GLK 407
>gi|418005377|ref|ZP_12645370.1| AAA family ATPase [Lactobacillus casei UW1]
gi|418006907|ref|ZP_12646811.1| AAA family ATPase [Lactobacillus casei UW4]
gi|410546774|gb|EKQ21018.1| AAA family ATPase [Lactobacillus casei UW1]
gi|410550383|gb|EKQ24502.1| AAA family ATPase [Lactobacillus casei UW4]
Length = 448
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 272/428 (63%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ HLL + +L + + + + S+IFWGPPG GKTTLA+ I
Sbjct: 13 PLASRMRPQMLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRT 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV SAVTSG+K+++ +++A + R + ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 73 KA--QFVTFSAVTSGIKEIKQVMKEAEQNR-ELGQKTIVFVDEIHRFNKAQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+ IGATTENPSF + LLSR RV L+ L ++ LL+RA+ D + G
Sbjct: 130 RGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKD-----PRGYGL 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V++ + + +GDAR+ALN LE++ A E+ G V
Sbjct: 185 QKVKIGKKLLAQIADFANGDARIALNTLEMAVTNA----------------ETKGG---V 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D + K L YD+ GEEHYNLISALHKSMR +D DAAIYWLARMLE GE PL
Sbjct: 226 ITVTQADVAQLLTKKALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASED+G+AD AL ++ YQAC F+GMPEC V L V YLALAPKS ++
Sbjct: 286 YVARRLVRFASEDIGMADSRALEITIAVYQACQFIGMPECTVHLTHAVTYLALAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY---TPDDPSAKQSFLP 539
Y A A+K E++ E VPL +RN T LM+++GYGK Y Y T D + Q+ +P
Sbjct: 346 YTAYEGAKKDATETLA--EPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT-MP 402
Query: 540 PSLEGYKF 547
+L G +
Sbjct: 403 DNLIGKTY 410
>gi|328771508|gb|EGF81548.1| hypothetical protein BATDEDRAFT_29838 [Batrachochytrium
dendrobatidis JAM81]
Length = 480
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/513 (41%), Positives = 294/513 (57%), Gaps = 57/513 (11%)
Query: 43 TTTGAACSFELPVPNPNPNQNPVQPKLDRFFHFQTKPS--SAAANAVQEKEKDREIEPSP 100
T A+C P QPKL F QTK + + E D EP
Sbjct: 18 THLDASCEKHTASPPLQQQTATCQPKL---FQMQTKLQFLKSPNHKRSRDELDGYKEP-- 72
Query: 101 LFKRLKTRHDVDST--TALHVPHA--PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN 156
++D+ +T + PH PL++ RP ++N+ G + ++ SLLR + S
Sbjct: 73 ------IQNDIGNTLMSVYKPPHVYRPLADLARPTSLNEFFGHEAVVGQTSLLRQLIESK 126
Query: 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSN 216
++P +I WGPPG+GKTTLA+ I + V +K +SA V DVR + E+AR R +
Sbjct: 127 KVPCMILWGPPGSGKTTLARIIAKELGVHFKE--MSATIHNVSDVRKSCEEARTQRKLTG 184
Query: 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL 276
K+++LF+DE+HRF K+QQD FLP +E G FI ATTENPSF + LLSRC+V ++
Sbjct: 185 KKSILFLDEIHRFTKAQQDFFLPPVEQGEFTFIAATTENPSFRVNAALLSRCKVFVMDKY 244
Query: 277 KPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336
+ + L + + + + + I ++ + CDGDARV++NALE+ A+
Sbjct: 245 E---------------SASLCQILRHSPFVIPDNVIAYISTMCDGDARVSINALEM-ALD 288
Query: 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALH 396
AAV + ++ TL + A HL YD GEEHYN+ISALH
Sbjct: 289 AAVHSKLDQL-------------------TLPAVQLALSKSHLLYDHDGEEHYNIISALH 329
Query: 397 KSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHF 456
KSMRG+DADAA+YW+ RM+ GE PLY+ARRLVRFASED+GLAD AL A+S YQAC
Sbjct: 330 KSMRGSDADAALYWMGRMIFAGEDPLYVARRLVRFASEDIGLADSSALTLAMSTYQACQV 389
Query: 457 LGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMK 516
+GMPEC+ ILA CV YLA APKS+ YRA+ + I S VPLHLRNAPT+L++
Sbjct: 390 IGMPECDAILAHCVTYLARAPKSVETYRAVKKVKDTIMNS--HAYPVPLHLRNAPTQLLQ 447
Query: 517 EIGYGKGYIYTPD-DPSAKQSFLPPSLEGYKFL 548
++GYG GYIY PD + Q + P ++G KFL
Sbjct: 448 QVGYGAGYIYNPDHNGPVDQEYFPLQMKGTKFL 480
>gi|355729288|gb|AES09821.1| Werner helicase interacting protein isoform 1 [Mustela putorius
furo]
Length = 426
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/442 (46%), Positives = 267/442 (60%), Gaps = 41/442 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 6 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 65
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 66 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 125
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV--------- 292
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 126 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 185
Query: 293 -NNGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S T V + A++ L DGDAR LN L+++ + ++
Sbjct: 186 PTDPLSHSSNSTSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 239
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D A++
Sbjct: 240 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQSASL 299
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL V+LAQ
Sbjct: 300 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSAL------------------TVLLAQ 341
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 342 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 401
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 402 MYSEP-VDQEYLPEELRGVDFF 422
>gi|226355347|ref|YP_002785087.1| recombination factor protein RarA [Deinococcus deserti VCD115]
gi|226317337|gb|ACO45333.1| putative DNA-dependent ATPase [Deinococcus deserti VCD115]
Length = 451
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/427 (49%), Positives = 272/427 (63%), Gaps = 41/427 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ER+RP + +VVGQ HLL P L + S RL S+I WGPPG GKTTLA+ +
Sbjct: 23 PPAPLAERLRPRTVAEVVGQTHLLGPGRPLTRVLQSGRLGSLILWGPPGVGKTTLARLVA 82
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
V F+ LSAV++GVKDVR+AV +A +LR + RT+LF+DE+HRFNK+QQD+ LP
Sbjct: 83 GEVGA--HFIALSAVSAGVKDVREAVTEAERLRARGT-RTILFLDEIHRFNKAQQDALLP 139
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF + L SR R L L L D++ LL+RA+ D GL
Sbjct: 140 HVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALTQEDIKGLLERALSD-ERGLPG- 197
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
V V +A++ L DGDAR AL+ LE++A A D +
Sbjct: 198 -----VSVEPEALDLLARLADGDARRALSTLEVAATLA------------------DPVT 234
Query: 360 PYVALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
P + EAF +HL A D+ GE+ YNLISALHKS+RG+ DA++YWLARM+EGG
Sbjct: 235 P-------EAVTEAF-GRHLPAMDKNGEDFYNLISALHKSVRGSHVDASLYWLARMIEGG 286
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
Y+ARR+VR ASED+GLADP AL A++ + FLG PE ++ LAQ V YLALAPK
Sbjct: 287 ADTGYVARRVVRMASEDIGLADPQALRLAIAARDSVEFLGSPEGDLALAQAVVYLALAPK 346
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQS 536
S S+Y A G A + +RE G++ VP+HLRNAPT LM+ GYGKGY Y DDP S +Q
Sbjct: 347 SNSVYNAWGDALRAVRE--GESLPVPVHLRNAPTALMRAQGYGKGYAYYFDDPEGSFEQL 404
Query: 537 FLPPSLE 543
+LP ++
Sbjct: 405 YLPEGVQ 411
>gi|327281797|ref|XP_003225633.1| PREDICTED: ATPase WRNIP1-like [Anolis carolinensis]
Length = 461
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/395 (50%), Positives = 249/395 (63%), Gaps = 26/395 (6%)
Query: 171 KTTLAKAIVNSVAVS-YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
+TTLA I NS + +FV LSA ++ DVRD + A+ + ++T+LF+DE+HRF
Sbjct: 74 QTTLAHIIANSSKKNGTRFVTLSATSAKTNDVRDVIAQAQNEKRLCKRKTILFIDEIHRF 133
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
NKSQQD+FLP +E G++ IGATTENPSF + + LLSRCRV+ L L +E +L RAV
Sbjct: 134 NKSQQDTFLPHVECGTVTLIGATTENPSFQVNSALLSRCRVIVLEKLSVEAMEAILMRAV 193
Query: 290 DDVN--------------NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335
+ NG + T V + AI L CDGDAR LN L+++
Sbjct: 194 KSLGIQILSQEEPHTGSVNGSNSKSSETCVCIERKAINTLAYLCDGDARTGLNGLQMA-- 251
Query: 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISAL 395
V + K Q D S ++T D KE Q H+ YDRAGEEHYN ISAL
Sbjct: 252 -----VQARLTKLTNQSTTGDS-SIQGMIITEDHVKEGLQRSHILYDRAGEEHYNCISAL 305
Query: 396 HKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACH 455
HKSMRG+D +A++YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CH
Sbjct: 306 HKSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCH 365
Query: 456 FLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLM 515
F+GMPEC V+LAQCV Y A APKSI +Y A + +R G VPLHLRNAPT+LM
Sbjct: 366 FIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNYQGPLPPVPLHLRNAPTRLM 425
Query: 516 KEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFL 548
K++GY KGY Y P +P KQ +LP L+G F
Sbjct: 426 KDLGYAKGYKYNPAYKEP-VKQEYLPKELKGTNFF 459
>gi|357406785|ref|YP_004918709.1| ATPase AAA [Methylomicrobium alcaliphilum 20Z]
gi|351719450|emb|CCE25126.1| ATPase, AAA family protein [Methylomicrobium alcaliphilum 20Z]
Length = 444
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/430 (48%), Positives = 271/430 (63%), Gaps = 31/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP+ ++D +GQ H++ P L AV S RL S+IFWGPPGTGKTTLA+ I SV
Sbjct: 8 PLAERMRPMRLDDYIGQQHIIKPGKPLYEAVASGRLHSMIFWGPPGTGKTTLARII--SV 65
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ +SAV +GVKD+RDAV +A+K+R N+RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 66 HSDAHFISISAVLAGVKDIRDAVAEAKKIRESENRRTILFVDEVHRFNKSQQDAFLPHVE 125
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ FIGATTENPSF L LLSR RV LN L+ D+ +L++A+ D GL G
Sbjct: 126 DGTVYFIGATTENPSFALNNALLSRARVYVLNALQAVDLAAVLEKALTDRERGL----GE 181
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE+ D DGDAR LN LEI+A A+ K + V E S G
Sbjct: 182 QTVEMADDIKRQFVDAADGDARRLLNLLEIAAELASAHGSGKIDEIVTGEVLSGGVR--- 238
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+D+ GEE YN ISALHKS+RG+ DA++YWL RM++GG
Sbjct: 239 -----------------RFDKQGEEFYNQISALHKSVRGSSPDASLYWLCRMIDGGCDLA 281
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL A+S ++A LG PE + LA V YLA APKS ++
Sbjct: 282 YLARRIVRIASEDIGNADPRALPVAISAWEAQERLGSPEGELALAHAVVYLACAPKSNAV 341
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R S + GVP+HLRNAPT LMK + YGK Y Y D+P +A +++ P
Sbjct: 342 YMAYNAAMRDARNS--GSLGVPVHLRNAPTALMKSLDYGKEYRYAHDEPDAYAAGENYFP 399
Query: 540 PSLEGYKFLD 549
+ G ++ +
Sbjct: 400 DEMIGTRYYE 409
>gi|408420957|ref|YP_006762371.1| repliaction-associated recombination protein A RarA [Desulfobacula
toluolica Tol2]
gi|405108170|emb|CCK81667.1| RarA: repliaction-associated recombination protein A [Desulfobacula
toluolica Tol2]
Length = 437
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/427 (45%), Positives = 274/427 (64%), Gaps = 32/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++++ GQ HL + SLL+ A+ +R+ SI+ WGPPG GKTTLA I N
Sbjct: 17 PLADRMRPKSLDELEGQKHLTAKGSLLQKAIEDDRVFSILLWGPPGCGKTTLAGIIANET 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV +SAV SGVK++R +E A+K + KRT+LFVDE+HRFNK+QQD+FL +E
Sbjct: 77 --KSEFVEISAVLSGVKEIRQIIEQAKKRQALYQKRTILFVDEIHRFNKAQQDAFLHHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I +GATT+NPSF +I L+SRCRV TL L+ ++ +L RA+ D NG+ G
Sbjct: 135 KGLITLVGATTQNPSFEVIPALVSRCRVFTLKSLEKENILTILIRALTDKKNGM----GI 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ H+A+E + DGDAR+AL LE + + Q+D
Sbjct: 191 EKEQLTHEALEHIARVADGDARIALANLETAVL------------HFSQKDR-------- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+++ D + A + K L YD+AGEEH+NLISA KSMRG+D DAAIYWL RML G+ P
Sbjct: 231 --ISIQDVETAIEKKSLLYDKAGEEHFNLISAFIKSMRGSDPDAAIYWLERMLMAGDDPY 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RR++RFA+ED+G+ADP AL A++ ++ LG PE + +L Q YLA APKS ++
Sbjct: 289 YMLRRMIRFATEDIGMADPGALTMALNAGESFRILGRPEGDDVLFQAAIYLATAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPP 540
Y A +K ++E+ E VPLH+RNAPTKLMK + YGKGY Y D QS+LP
Sbjct: 349 YMARKQVKKTVQET--GYEPVPLHIRNAPTKLMKNLNYGKGYKYAHDYKGGYIPQSYLPE 406
Query: 541 SLEGYKF 547
+L ++F
Sbjct: 407 TLCDHRF 413
>gi|328792628|ref|XP_392908.4| PREDICTED: ATPase WRNIP1-like isoform 1 [Apis mellifera]
Length = 528
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/441 (45%), Positives = 275/441 (62%), Gaps = 26/441 (5%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP + VGQ H+L P+++L + +P+II WGPPG GKT+LA I +
Sbjct: 102 YIPLAERMRPTTLLGYVGQLHILGPSTILYQLLNKFEIPNIILWGPPGCGKTSLANVIAH 161
Query: 181 SVAVS----YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
++V LSA +GV +V++ + A +K N+RTV+F+DE+HRFNK+QQD
Sbjct: 162 ICKTKSNGKIRYVKLSAAMAGVNEVKEIITIATN-ELKFNRRTVVFMDEIHRFNKNQQDV 220
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV---- 292
FLP +E G I +GATTENPSF L + LLSRCRV+ L L ++ +L +AV +
Sbjct: 221 FLPHVESGIITLVGATTENPSFSLNSALLSRCRVIVLEKLNISNLICILSKAVISLEGIV 280
Query: 293 --NNGLSKSVGGT-RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
+N +S+++ + ++ IE+L DGDAR+AL LE++ ++P E
Sbjct: 281 HNSNKISENITQVPKFIIDEPTIEWLAGTSDGDARIALGGLELAV---QCKLPNNE---- 333
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
D +TLDD KE+ + H+ YD+ G++HY++ISALHKS+R +D +A++Y
Sbjct: 334 ------DFLKNGPVTITLDDIKESLKKTHMLYDKKGDQHYDMISALHKSVRASDENASLY 387
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WL RM+ GGE P YIARRLVR A ED+GL DP AL A++ C +GM ECNV+LAQC
Sbjct: 388 WLTRMILGGEDPNYIARRLVRMACEDIGLEDPKALEIAINTMHGCKMIGMSECNVLLAQC 447
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
YLA APKS + AL AAQ+VI E G GVPLHLRNAPTKLMK +GY KGY
Sbjct: 448 TIYLARAPKSRLMEDALRAAQRVIAEHKGPQPGVPLHLRNAPTKLMKNLGYSKGYNMKHK 507
Query: 530 DPSAKQSFLPPSLEGYKFLDW 550
+ S ++LP LE F D+
Sbjct: 508 NESG-LNYLPEGLENINFFDY 527
>gi|310823298|ref|YP_003955656.1| ATPase [Stigmatella aurantiaca DW4/3-1]
gi|309396370|gb|ADO73829.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1]
Length = 443
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/449 (46%), Positives = 276/449 (61%), Gaps = 55/449 (12%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ERMRP + D GQ+HL LR + +++PS+I WGPPGTGKTTLA+ I
Sbjct: 15 QAPLAERMRPSTLADFAGQEHLTGEGRFLRRVIEQDQVPSLILWGPPGTGKTTLARVIAQ 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F LSAV SGVKD+R+ V A++ +RT+LF+DE+HRFNKSQQD+ LP
Sbjct: 75 ATGAS--FESLSAVLSGVKDIRETVARAQERWRLHRQRTLLFIDEIHRFNKSQQDALLPH 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G++ IGATTENPSF + LLSR RV+TL L+ ++ +L+RAV K +
Sbjct: 133 VEKGTVTLIGATTENPSFEVNAALLSRARVVTLRGLEEEELVGVLRRAVV-----APKGL 187
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG +V+V+ +A++F+ GDAR AL ALE++A S G S
Sbjct: 188 GG-KVQVDDEALQFIAQAAGGDARKALTALEVAA--------------------SYGGSQ 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V A+EA Q K L YD+ GEEHYN++SA KSMRG+D DAA+YW+ARMLE GE
Sbjct: 227 ----VNRQAAEEALQQKALLYDKGGEEHYNVVSAFIKSMRGSDVDAALYWMARMLEAGED 282
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P+++ RR+V FASED+G ADP AL AV A +G+PE + L Q V YLALAPKS
Sbjct: 283 PVFLFRRMVIFASEDIGNADPRALGVAVDALHAFQLMGLPEGALPLTQAVTYLALAPKSN 342
Query: 481 SIYRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYI--------YTPD 529
++ A GAA+ + + EG VP+HLRNAPTKLMK +GYG GY Y P+
Sbjct: 343 AVITAYGAARAAVTQ-----EGALPVPMHLRNAPTKLMKSLGYGGGYKYPHNFEGNYVPE 397
Query: 530 DPSAKQSFLPPSLEGYKFLDWPKSNTTDK 558
D +LP +L+ +F P +N ++
Sbjct: 398 D------YLPEALKARRFYK-PSTNGLER 419
>gi|390957497|ref|YP_006421254.1| AAA ATPase [Terriglobus roseus DSM 18391]
gi|390412415|gb|AFL87919.1| AAA ATPase [Terriglobus roseus DSM 18391]
Length = 449
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 266/427 (62%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL ERMRP N+++ GQ HL+ P LR A+ S+IFWGPPGTGKTTLAK I N+
Sbjct: 23 PLPERMRPRNLDEFAGQTHLIGPGKPLRLAIERGEPGSMIFWGPPGTGKTTLAKIIANTT 82
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + F+ SAVTSG+K+++ + DA + RT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 83 SAT--FIEFSAVTSGIKEIKQVMVDAERA-AAHGSRTILFVDEIHRFNKAQQDAFLPYVE 139
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF L LLSRCRV L + ++ LL+R++ D G +G
Sbjct: 140 RGALRLIGATTENPSFELNAALLSRCRVYVLQSIGDEEIVALLQRSLTDEERG----IGS 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + A+E + S +GDAR ALNALE +A R G S
Sbjct: 196 LHLTTSEGALESIASFSNGDARYALNALETAAHLLTGR----------------GDST-- 237
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + +A Q + L YD+ GE+HY+LISALHKS+R +DADAAIYWL RML GE P+
Sbjct: 238 --LTREAVADALQQRTLLYDKKGEQHYDLISALHKSVRNSDADAAIYWLRRMLAAGEDPM 295
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLA P ALN +S QA HFLG PE + LAQ V YLALAPKS ++
Sbjct: 296 YVARRVVRMAVEDIGLAAPEALNLTLSAQQAMHFLGSPEGELALAQAVVYLALAPKSNAV 355
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A + + Q VPLHLRNAPT+L+K++GYGK Y Y D P A LP
Sbjct: 356 YVAFNDVAADVNATGSQP--VPLHLRNAPTRLLKDLGYGKEYQYAHDLPGKVAAMQCLPD 413
Query: 541 SLEGYKF 547
L+ ++
Sbjct: 414 ELKDRRY 420
>gi|313680216|ref|YP_004057955.1| recombination protein mgsa [Oceanithermus profundus DSM 14977]
gi|313152931|gb|ADR36782.1| Recombination protein MgsA [Oceanithermus profundus DSM 14977]
Length = 435
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 215/436 (49%), Positives = 276/436 (63%), Gaps = 38/436 (8%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
+L P APL+ER+RP +++VVGQ+HL P LR + + RL S+IFWGPPGTGKTTLA
Sbjct: 2 SLFTPRAPLAERLRPRTLDEVVGQEHLTGPGKPLRVMLENGRLASMIFWGPPGTGKTTLA 61
Query: 176 KAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ + N V +FV +SAV++GVK+VR+AV+ A++ V + + TVLF+DEVHRFNK+QQD
Sbjct: 62 RILANGV--DARFVAMSAVSAGVKEVREAVKQAQEA-VSAGRPTVLFLDEVHRFNKAQQD 118
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ LP +E G + IGATTENPSF + L SR RV L L D+ +L+RA
Sbjct: 119 ALLPHVESGLLTLIGATTENPSFEVNPALRSRARVYVLKALGEDDLMRVLERA------- 171
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
L S G E +A+ + + GDAR ALNALE++A RV
Sbjct: 172 LISSEGLPEAEAEEEALRLIAAAAMGDARRALNALELAAELGGGRV-------------- 217
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
TLD A+EA +D+ GE Y+LISALHKS+RG+ DAA+Y+LARML
Sbjct: 218 ----------TLDAAREALGAGQPVFDKGGEAFYDLISALHKSVRGSHVDAALYYLARML 267
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
GG PLY+ RRLVR ASEDVGLADP AL QA++ +A LG PE + LAQ YLAL
Sbjct: 268 AGGVDPLYVGRRLVRMASEDVGLADPGALRQALAAVEAYQLLGSPEGELALAQATVYLAL 327
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SA 533
APKS S+YRA AA++ + + VPLHLRNAPTKLMKE+GY +GY Y DDP S
Sbjct: 328 APKSNSVYRAFAAARRAV--ETHPDAEVPLHLRNAPTKLMKELGYSRGYAYYHDDPEGSF 385
Query: 534 KQSFLPPSLEGYKFLD 549
Q++LP LE +F D
Sbjct: 386 AQAYLPEPLEPMRFFD 401
>gi|320583346|gb|EFW97561.1| DNA replication ATPase [Ogataea parapolymorpha DL-1]
Length = 769
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/429 (44%), Positives = 269/429 (62%), Gaps = 18/429 (4%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++ D +GQ+HL+ +LR + ++R+PS+I WG PGTGKTTLA+ I S
Sbjct: 343 PLAERLRPSSLEDYIGQEHLVGEGGILRGFIQNDRIPSLILWGYPGTGKTTLARII--SH 400
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSA ++G+ D + E+AR + + T++F+DE+HRFNK+QQD FLP +E
Sbjct: 401 ATKSRFIELSATSNGISDCKRVFEEARNEYKLTKRHTIVFIDEIHRFNKAQQDIFLPHVE 460
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I +GATTENPSF L + LLSRCRV LN L ++ ++ +A+ +N
Sbjct: 461 KGTITLVGATTENPSFQLNSALLSRCRVFVLNRLTSDELHKIVSKALLVINKTRKLVHNV 520
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ N +AI ++C+ DGD+R ALN LE++ +++ K V +
Sbjct: 521 PVLRFNKEAIGYICNIADGDSRSALNLLELADSHFMTNYSLEQGKHVIE----------- 569
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V + +E + H+ YDR G+ HY+ ISA HKS+RG++ADAA+Y+L RML+GGE PL
Sbjct: 570 --VNAEQLREVLKRTHMVYDRVGDAHYDTISAFHKSIRGSNADAAMYYLGRMLKGGENPL 627
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++R ASEDVG+ D L A++ YQA F+G+PE ++ L C LA APKS+ I
Sbjct: 628 YIARRMIRIASEDVGVLDDSCLPFAIATYQAVQFVGLPEADLALVHCAVKLARAPKSVEI 687
Query: 483 YRALGAAQ-KVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR K+ E + +PLHLRNAPTKLMKE+GY KGY Y PD D KQ + P
Sbjct: 688 YRGWNELNAKLDSEPEFASASIPLHLRNAPTKLMKEVGYSKGYKYNPDYKDGRVKQEYFP 747
Query: 540 PSLEGYKFL 548
+ +FL
Sbjct: 748 EQIGEMQFL 756
>gi|298246048|ref|ZP_06969854.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
44963]
gi|297553529|gb|EFH87394.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
44963]
Length = 481
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/450 (46%), Positives = 284/450 (63%), Gaps = 38/450 (8%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
S V PL+ RMRP +++++GQ+HLL P LLR + S R+ S++FWGPPG+GKT
Sbjct: 32 SEEGTQVIGEPLASRMRPRTLDELLGQEHLLGPGKLLRRTIESGRVTSMLFWGPPGSGKT 91
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
TL++AI +FV LSA ++GV D+R V++A KLR S +RT+LF+DE+HRFNK+
Sbjct: 92 TLSEAIARHADA--RFVTLSATSAGVADLRRVVDEAAKLRQFSQRRTILFIDEIHRFNKA 149
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQD+ LP +E G++ IGATTENPSF + + LLSRCRV L L + +L+RA++D
Sbjct: 150 QQDAVLPHVERGTVTLIGATTENPSFEVNSALLSRCRVFVLKALDEAQIVRILQRALEDS 209
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
GL G ++ + +A++ + GDAR ALN LE++A + V
Sbjct: 210 ERGL----GQYQITSDEEALQAIAIFASGDARTALNVLELAA---------QGVMSGGGT 256
Query: 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
DE +TL +E Q + L YD++G++HY++ISALHKS+RG+D D ++YWL
Sbjct: 257 DERH--------ITLALVEEVMQHRALLYDKSGDQHYDMISALHKSVRGSDPDGSLYWLV 308
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RMLE GE PLYIARR+VR A+ED+GLADP AL+ V+ QA HF+GMPE VILA+ VAY
Sbjct: 309 RMLEAGEDPLYIARRVVRMAAEDIGLADPQALSVCVAAQQATHFVGMPEAGVILAEAVAY 368
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT----- 527
LA APKS ++Y A + I G N+ VPL +RNAPT+LMK + YGK Y Y
Sbjct: 369 LAAAPKSNAVYNAYNQIRAEIMN--GPNDPVPLWIRNAPTQLMKNLDYGKDYKYAHDFYK 426
Query: 528 ---PDDP-----SAKQSFLPPSLEGYKFLD 549
DDP + Q +LP L G +F +
Sbjct: 427 DMQSDDPERPPVTRLQEYLPERLAGQRFYE 456
>gi|449278184|gb|EMC86129.1| ATPase WRNIP1, partial [Columba livia]
Length = 393
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/402 (49%), Positives = 255/402 (63%), Gaps = 28/402 (6%)
Query: 171 KTTLAKAIVNSVAVS-YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
+TTLA I NS + +FV LSA ++ DVRD + A+ + ++T+LF+DE+HRF
Sbjct: 1 QTTLAHIIANSSKKNGTRFVTLSATSAKTNDVRDVISQAQNEKRLFKRKTILFIDEIHRF 60
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
NKSQQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L L +E +L RAV
Sbjct: 61 NKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSVEAMEAILMRAV 120
Query: 290 DDVNNGLSKSVGGTR----------------VEVNHDAIEFLCSNCDGDARVALNALEIS 333
+ G+ G + V + A+ L CDGDAR LN L+++
Sbjct: 121 RSL--GVQVLGQGDQHSSSATGSSSGSSEFPVYIEEKALNALAYLCDGDARTGLNGLQLA 178
Query: 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLIS 393
R+ V + + + G S L+T + KE Q H+ YDRAGEEHYN IS
Sbjct: 179 V---QARLAVGKTTPLHG---TTGGSADGILITEEHVKEGLQRSHILYDRAGEEHYNCIS 232
Query: 394 ALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQA 453
ALHKSMRG+D +A++YWLARMLEGGE PLY+ARRLVRFASED+GLADPLAL QAV+ YQ
Sbjct: 233 ALHKSMRGSDENASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPLALTQAVAAYQG 292
Query: 454 CHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTK 513
CHF+GMPEC VILAQCV Y A APKSI +YRA ++ +R G VPLHLRNAPT+
Sbjct: 293 CHFIGMPECEVILAQCVVYFARAPKSIEVYRAYNNVKECLRMHTGPLPPVPLHLRNAPTR 352
Query: 514 LMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFLDWPKS 553
LMK +GYGKGY Y P +P +Q +LP L+G F K+
Sbjct: 353 LMKNLGYGKGYKYNPMYKEP-VEQDYLPQELKGTDFFKEQKT 393
>gi|94985501|ref|YP_604865.1| recombination factor protein RarA [Deinococcus geothermalis DSM
11300]
gi|94555782|gb|ABF45696.1| AAA ATPase, central region [Deinococcus geothermalis DSM 11300]
Length = 451
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/423 (50%), Positives = 267/423 (63%), Gaps = 41/423 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL ER+RP + +VVGQ HLL P L + RL S+IFWGPPG GKTTLA+ I
Sbjct: 26 PPAPLPERLRPRTLAEVVGQGHLLGPGRPLTRLLQGGRLGSLIFWGPPGVGKTTLARLIA 85
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ V F+ LSAV++GVKDVR+AV +A +LR + T+LF+DE+HRFNK+QQD+ LP
Sbjct: 86 SEVGA--HFIPLSAVSAGVKDVREAVMEAERLRARGQP-TILFLDEIHRFNKAQQDALLP 142
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF + L SR R L L PL DV LL+RA+ D
Sbjct: 143 HVESGLLTLIGATTENPSFEVNPALRSRARTLVLEPLSQEDVRGLLERALADPR------ 196
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G V +A++ L DGDAR AL LE++A A +
Sbjct: 197 -GLPGVAAQPEALDLLARLADGDARRALGTLEVAATLA---------------------N 234
Query: 360 PYVALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
P VT + +EAF +HL A D+ GE+ YNLISALHKS+RG+ +A++YWLAR+LEGG
Sbjct: 235 P----VTSEAVREAF-GRHLPAMDKNGEDFYNLISALHKSVRGSHVNASLYWLARLLEGG 289
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
PLY+ARR++R ASED+GLADP AL V+ A FLG PE + LAQ V YLALAPK
Sbjct: 290 ADPLYVARRIMRMASEDIGLADPQALRLCVAARDAMEFLGSPEGELALAQAVVYLALAPK 349
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQS 536
S S+Y A A+ +RE G+ VPLHLRNAPT LM+E GYG+GY Y DDP S +Q
Sbjct: 350 SNSVYVAWKKARDAVRE--GEMLPVPLHLRNAPTALMREQGYGQGYAYYFDDPQGSFEQD 407
Query: 537 FLP 539
+LP
Sbjct: 408 YLP 410
>gi|429220520|ref|YP_007182164.1| AAA ATPase [Deinococcus peraridilitoris DSM 19664]
gi|429131383|gb|AFZ68398.1| AAA ATPase [Deinococcus peraridilitoris DSM 19664]
Length = 427
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/429 (50%), Positives = 270/429 (62%), Gaps = 42/429 (9%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP +++VVGQ LL P LR + S RL S+I WGPPG GKTTLA+ +
Sbjct: 8 APLAERLRPRTLDEVVGQRQLLGPGKPLRRLLESGRLNSLILWGPPGVGKTTLARLVAQY 67
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V F+ LSAVT+GVKDVR AV++A + RV +RT+LF+DE+HRFNK+QQD+ LP +
Sbjct: 68 VKA--HFISLSAVTAGVKDVRAAVDEAER-RVARGERTILFLDEIHRFNKAQQDALLPHV 124
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF + L SR R L L PL DV LL RA+ D GL
Sbjct: 125 ERGLLTLIGATTENPSFEVNPALRSRARTLVLEPLSFEDVRDLLSRALRD-ERGLPG--- 180
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+ + +A++ L DGDAR AL LE++A S G
Sbjct: 181 ---VDASDEALDLLARLSDGDARRALGTLEVAA--------------------SLGNPVT 217
Query: 362 VALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
LVT +A+ KHL A D+ GE+ YNLISALHKS+RG+ DAA+YWLARM+ GG
Sbjct: 218 PELVT-----DAY-GKHLPAMDKGGEDFYNLISALHKSVRGSHPDAALYWLARMIAGGAD 271
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR A+ED+GLADP AL AV+ Q FLG PE ++ LAQ V YLALAPKS
Sbjct: 272 PLYVARRIVRMAAEDIGLADPQALRLAVAAQQTAEFLGSPEGDLALAQLVVYLALAPKSN 331
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQSFL 538
S+Y A A + E Q VP+HLRNAPT+LM+ GYGKGY Y DDP S Q++L
Sbjct: 332 SVYVAWKHALDLAAE---QQHPVPVHLRNAPTQLMRAQGYGKGYAYYFDDPEGSFAQTYL 388
Query: 539 PPSLEGYKF 547
P +L G +
Sbjct: 389 PDALNGLQI 397
>gi|78042989|ref|YP_361014.1| recombination factor protein RarA [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995104|gb|ABB14003.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901]
Length = 444
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 283/430 (65%), Gaps = 28/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP ++++ +GQ+H+L LLR A+ S+RL S+IF+GPPGTGKTTLA+ I ++
Sbjct: 15 APLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTTLARIIAST 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F ++AVTSGV ++R+ ++ A++ +RTVLF+DE+HRFNK+QQD+ LP +
Sbjct: 75 TKSG--FESINAVTSGVGEIREVIKKAKEREKYYGERTVLFIDEIHRFNKAQQDALLPEV 132
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+IV IGATTENP F + PLLSR R+ PL+P + +++RA+ D GL G
Sbjct: 133 EAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEPEHIREIVRRALVDKERGL----G 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+VE++ +A++ L + GDAR ALN +E++ +T P E DG
Sbjct: 189 EYKVEISEEALDHLVTMAAGDARAALNGIELAVLT----TPPDE----------DG---- 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V +T++ +++ Q K + YD+ G+ HY+ ISA KS+RG+D DAA+Y+LARMLE GE P
Sbjct: 231 VRKITVEIIEQSMQKKAIVYDKEGDNHYDTISAFIKSLRGSDPDAAVYYLARMLEAGEDP 290
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRL+ A+EDVGLADP+ALN AV+ + A F+GMPE + LA+ Y+A APKS +
Sbjct: 291 RFIARRLIVHAAEDVGLADPMALNVAVAAFHALEFVGMPEARLPLAEAAIYIACAPKSNA 350
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+ +A+ A V+R+ G+N +P HLR+A KE+G GKGY Y D P + +LP
Sbjct: 351 VIKAIDRALAVVRK--GENGPIPQHLRDAHYAGAKELGRGKGYKYPHDYPGHFVLEEYLP 408
Query: 540 PSLEGYKFLD 549
+L+G +F +
Sbjct: 409 ENLKGQRFYE 418
>gi|386857311|ref|YP_006261488.1| AAA ATPase [Deinococcus gobiensis I-0]
gi|380000840|gb|AFD26030.1| AAA ATPase, central region [Deinococcus gobiensis I-0]
Length = 441
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/439 (48%), Positives = 270/439 (61%), Gaps = 50/439 (11%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ER+RP N+ +VVGQ LL P L + S RL S+I WGPPG GKTTLA+ I
Sbjct: 10 PPAPLAERLRPRNVAEVVGQSKLLGPGRPLTRVLASGRLGSLILWGPPGVGKTTLARLIA 69
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
V FV LSAV++GVKDVR+AV +A ++R + K TVLF+DE+HRFNK+QQD+ LP
Sbjct: 70 GEVGA--HFVALSAVSAGVKDVREAVAEAERVRGRGQK-TVLFLDEIHRFNKAQQDALLP 126
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF + L SR R L L L P ++ LL+RA+ D +
Sbjct: 127 HVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALTPEEIRGLLERALTD-----PRG 181
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ G E A++ L DGDAR AL+ LE++A + PV E
Sbjct: 182 LPGVGAEAG--ALDLLARLADGDARRALSTLEVAATLSD---PVTE-------------- 222
Query: 360 PYVALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
D EAF +HL D+ GE+ YNLISALHKS+RG+ D A+YWLARM+EGG
Sbjct: 223 --------DAVTEAF-GRHLPQMDKNGEDFYNLISALHKSVRGSHVDGALYWLARMVEGG 273
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
PLY+ARR+VR A+ED+GLADP AL A++ FLG PE ++ LAQ V YLALAPK
Sbjct: 274 ADPLYVARRVVRMAAEDIGLADPQALRLAIAARDTVEFLGSPEGDLALAQAVVYLALAPK 333
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQS 536
S S+Y A A +RE G+ +PLHLRNAPT LM+ GYG+GY Y DDP S Q
Sbjct: 334 SNSVYVAWKRALDAVRE--GETLPIPLHLRNAPTALMRVQGYGQGYAYYFDDPEGSFAQD 391
Query: 537 FLP---------PSLEGYK 546
+LP P+ EG++
Sbjct: 392 YLPGGARLDLYAPTGEGWE 410
>gi|227515139|ref|ZP_03945188.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
gi|227086471|gb|EEI21783.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
Length = 448
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 263/427 (61%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + GQD L+ +L + +RLPS+I WGPPG GKTTLA+ I
Sbjct: 17 PLANRVRPRELAEFFGQDQLVGTGKVLSELIEQDRLPSLILWGPPGVGKTTLAEIIAQKT 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAV S +KD++ +E A + +RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 77 KA--KFITFSAVNSSIKDIKQVME-AATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF L LLSRC+V L L + +L RA+ N
Sbjct: 134 RGEIILIGATTENPSFELNAALLSRCKVFVLRALDKGALVKILHRALHHPN-----GFAD 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +E + + +GDAR+ALN LE++ + + +G +
Sbjct: 189 LEITVEDGVLEAIANFANGDARMALNTLEMAVLNG----------------QRNG---HQ 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + L YDRAG+EHY+LISALHKSMR +D DAA+YW +RML GGE+PL
Sbjct: 230 VKLTNADLTQLTSTRSLRYDRAGDEHYDLISALHKSMRNSDVDAAVYWCSRMLAGGEEPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFA+EDVGLAD AL A + +QAC FLGMPEC+V L +CV YLA APKS ++
Sbjct: 290 YIARRLVRFAAEDVGLADANALQVATNTFQACQFLGMPECDVHLTECVIYLAAAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K+I+++ N VPL +RNAPTKLMKE+ YGKGY Y D D +P
Sbjct: 350 YAARNRAKKIIKQT--GNLPVPLQIRNAPTKLMKELDYGKGYQYAHDSSDRLTTMQTMPD 407
Query: 541 SLEGYKF 547
+ G K
Sbjct: 408 EISGAKL 414
>gi|345863859|ref|ZP_08816066.1| replication-associated recombination protein A [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345876877|ref|ZP_08828638.1| outer-membrane lipoprotein carrier protein [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344226077|gb|EGV52419.1| outer-membrane lipoprotein carrier protein [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|345124969|gb|EGW54842.1| replication-associated recombination protein A [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 442
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/429 (48%), Positives = 276/429 (64%), Gaps = 36/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++ + GQ H++ L+ A+ S+ L S+IFWGPPGTGKTTLA+ I
Sbjct: 17 PLADRMRPRSLAEFSGQQHIVGTGKPLQRAIESDHLHSMIFWGPPGTGKTTLARLIARHS 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V +F+ LSAV SGVK++R AVE AR R + ++ T+LF+DEVHRFNKSQQD+FLP +E
Sbjct: 77 GV--QFLSLSAVLSGVKEIRAAVEQARLARQQESRPTLLFIDEVHRFNKSQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++VFIGATTENPSF L LLSR R L L ++E ++++A+ D GL GG
Sbjct: 135 DGTLVFIGATTENPSFELNNALLSRARTYVLRALAGEELEQIIEQALQDSERGL----GG 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISA-ITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + + +A L DGDAR ALN LEI+A + + V+ + E
Sbjct: 191 SGLGITPEARRLLAEAADGDARRALNLLEIAADLAEQGEIGVELIGE------------- 237
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VA TL +D+ GE Y+ ISALHKS+RG+ DAA+YWLARM++GG P
Sbjct: 238 VASGTLRR-----------FDKGGEAFYDQISALHKSVRGSAPDAALYWLARMIDGGCDP 286
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+VR ASED+G ADP AL A++ +QA LG PE +++AQ V YLA APKS +
Sbjct: 287 LYIARRVVRMASEDIGNADPRALEIALNAWQAQERLGSPEGELVIAQAVVYLACAPKSNA 346
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A A V ++S G E VPLHLRNAPTKLMKE+ YGK Y Y D+P +A +++
Sbjct: 347 VYMAWKQALSVAKKS-GSLE-VPLHLRNAPTKLMKELDYGKAYRYAHDEPHAYAAAENYF 404
Query: 539 PPSLEGYKF 547
P LEG F
Sbjct: 405 PERLEGSCF 413
>gi|188586400|ref|YP_001917945.1| recombination factor protein RarA [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351087|gb|ACB85357.1| Recombination protein MgsA [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 447
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 28/424 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL++RMRP +++D VGQ+ +L LLR A+ ++RL SI+ +GPPG+GKTT+AK I +
Sbjct: 18 TPLADRMRPRSLDDFVGQEQILGKGKLLRRAIEADRLTSIVLYGPPGSGKTTIAKIIAEN 77
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F L+AVTSGVKD+R+ VE +++ R +K T++F+DE+HRFNKSQQD+ LP +
Sbjct: 78 TEKY--FYQLNAVTSGVKDLREVVEKSKENRSYYSKGTIMFIDEIHRFNKSQQDALLPYV 135
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENP F + PLLSR R+ L L ++E LL+R++ D GL G
Sbjct: 136 EDGTITLIGATTENPYFTVNNPLLSRSRIFKLEQLGIQEIETLLRRSLQDEEKGL----G 191
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
VE+N DA++ L +GD R+ALNALE++ +T VP +G
Sbjct: 192 NYNVEINQDALQHLTDCSNGDIRIALNALELAVLTT---VP-----------NENGTR-- 235
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T + A+E+ Q K + YDR G+ HY++ISA KS+RG+D DA +YWLARML GE P
Sbjct: 236 --IITKEVAEESIQKKAVYYDRDGDYHYDVISAFIKSLRGSDPDAGLYWLARMLSAGEDP 293
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR++ FASED+G ADP+AL A+S YQ+ LG+PE + LAQ V YLA APKS S
Sbjct: 294 LFIARRMLIFASEDIGNADPMALQLALSVYQSVERLGLPEGRLTLAQGVTYLASAPKSNS 353
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+ + A + + G ++ VP HL+++ + KE+G+GKGY Y P QS+LP
Sbjct: 354 SYKGILKAISEVEQ--GGHDQVPQHLKDSHYQGAKELGHGKGYQYPHKYPENFVHQSYLP 411
Query: 540 PSLE 543
+
Sbjct: 412 EEFQ 415
>gi|385812316|ref|YP_005848707.1| recombination ATPase [Lactobacillus fermentum CECT 5716]
gi|299783213|gb|ADJ41211.1| Recombination ATPase [Lactobacillus fermentum CECT 5716]
Length = 448
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 263/427 (61%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + GQD L+ +L + +RLPS+I WGPPG GKTTLA+ I
Sbjct: 17 PLANRVRPRELAEFFGQDQLVGTGKVLSELIEQDRLPSLILWGPPGVGKTTLAEIIAQKT 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAV S +KD++ +E A + +RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 77 KA--KFITFSAVNSSIKDIKQVME-AATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF L LLSRC+V L L + +L RA+ N
Sbjct: 134 RGEIILIGATTENPSFELNAALLSRCKVFVLRALDKGALVKILHRALHHPN-----GFAD 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +E + + +GDAR+ALN LE++ + + +G +
Sbjct: 189 LEITVEDGVLEAIANFANGDARMALNTLEMAVLNG----------------QRNG---HQ 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + L YDRAG+EHY+LISALHKSMR +D DAA+YW +RML GGE+PL
Sbjct: 230 VKLTNADLTQLTSTRSLRYDRAGDEHYDLISALHKSMRNSDVDAAVYWCSRMLAGGEEPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFA+EDVGLAD AL A + +QAC FLGMPEC+V L +CV YLA APKS ++
Sbjct: 290 YIARRLVRFAAEDVGLADTNALQVATNTFQACQFLGMPECDVHLTECVIYLAAAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K+I+++ N VPL +RNAPTKLMKE+ YGKGY Y D D +P
Sbjct: 350 YAARNRAKKIIKQT--GNLPVPLQIRNAPTKLMKELDYGKGYQYAHDSSDRLTTMQTMPD 407
Query: 541 SLEGYKF 547
+ G K
Sbjct: 408 EISGAKL 414
>gi|344292330|ref|XP_003417881.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Loxodonta africana]
Length = 635
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/442 (45%), Positives = 263/442 (59%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDALQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 333
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
+ LLSRCRV+ L L + +L RA++ +
Sbjct: 334 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSQ 375
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S T V + A++ L DGDAR LN L+++ + ++
Sbjct: 376 PADPLSHSSNSTSEPSVLIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 429
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 430 MFCKKSGQTYSPARVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 489
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 490 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPAALTQAVAAYQGCHFIGMPECEVLLAQ 549
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKS+ +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 550 CVVYFARAPKSVEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 609
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 610 MYSEP-VDQEYLPEELRGVDFF 630
>gi|15806898|ref|NP_295621.1| recombination factor protein RarA [Deinococcus radiodurans R1]
gi|6459682|gb|AAF11452.1|AE002029_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 434
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/439 (48%), Positives = 272/439 (61%), Gaps = 50/439 (11%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ER+RP + +V GQ HLL L + S RL S+I WGPPG GKTTLA+ +
Sbjct: 6 PPAPLAERLRPRTVAEVAGQSHLLGAGKPLTRVLQSGRLGSLILWGPPGVGKTTLARLLA 65
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
V F+ LSAV++GVKDVRDAV +A + + + +RTVLF+DE+HRFNK+QQD+ LP
Sbjct: 66 GEVGA--HFIALSAVSAGVKDVRDAVAEAEREQAR-GRRTVLFLDEIHRFNKAQQDALLP 122
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF + L SR R L L L P DV LL+RA+ D GL
Sbjct: 123 HVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALSPEDVLALLRRALSD-ERGLPG- 180
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
VE A+E L +GDAR AL+ LE++A A +
Sbjct: 181 -----VEAEDSALELLARLAEGDARRALSTLEVAATLA---------------------N 214
Query: 360 PYVALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
P VT + EAF +HL A D+ GE+ YNLISALHKS+R + DAA+YWLARML+GG
Sbjct: 215 P----VTEEAVTEAF-GRHLPAMDKNGEDFYNLISALHKSVRASHPDAALYWLARMLQGG 269
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARR+VR ASED+GLADP AL ++ + FLG PE ++ LAQ V YLALAPK
Sbjct: 270 ADPHYVARRIVRMASEDIGLADPQALRLTIAARDSMEFLGSPEGDLALAQAVVYLALAPK 329
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQS 536
S S+Y A + ++E G++ VPLHLRNAPT LMK GYG+GY Y DDP S +Q+
Sbjct: 330 SNSVYVAWKKTVRAVQE--GESLPVPLHLRNAPTALMKGQGYGRGYAYYFDDPAGSFEQN 387
Query: 537 FLP---------PSLEGYK 546
+LP P+ EG++
Sbjct: 388 YLPDGVQLDLYQPTGEGWE 406
>gi|444525284|gb|ELV13979.1| ATPase WRNIP1 [Tupaia chinensis]
Length = 420
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/442 (45%), Positives = 261/442 (59%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 6 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 65
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ +
Sbjct: 66 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQVN----- 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
LLSRCRV+ L L + +L RA++ + + S
Sbjct: 121 --------------------AALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 160
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T V + A++ L DGDAR LN L+++ + ++
Sbjct: 161 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 214
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP LVT +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 215 MFCKKSGQSYSPSRVLVTENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 274
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 275 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 334
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 335 CVVYFARAPKSIEVYSAYSNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 394
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 395 MYSEP-VDQEYLPEELRGVDFF 415
>gi|386814663|ref|ZP_10101881.1| AAA ATPase central domain protein [Thiothrix nivea DSM 5205]
gi|386419239|gb|EIJ33074.1| AAA ATPase central domain protein [Thiothrix nivea DSM 5205]
Length = 449
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 278/431 (64%), Gaps = 30/431 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++ GQ HLL+P LR A+ +R S++FWGPPGTGKTTLA+ I +
Sbjct: 22 APLAERMRPATLDEYAGQLHLLAPGKPLRRAIEESRPHSMLFWGPPGTGKTTLARLITHY 81
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +F+ LSAV +GVK++R AVE AR+ R + ++TVLFVDEVHRFNK+QQD+FLP I
Sbjct: 82 W--NAEFLTLSAVLAGVKEIRAAVEVARQNRERFGRKTVLFVDEVHRFNKAQQDAFLPHI 139
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++FIGATTENPSF L LLSR R L L D+ +LKRA+ D GL G
Sbjct: 140 EDGTLLFIGATTENPSFELNNALLSRVRTYVLRSLTQADIIAVLKRALQDSAKGL----G 195
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R++ + ++ L + DGDAR ALN LEI+A A +E+ C+
Sbjct: 196 EMRLQASDAVLDALATAADGDARRALNWLEIAADLA---------------EETTECAEI 240
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ E+ + +D+ G+ Y ISALHKS+RG D DAA+YWL RML+GG P
Sbjct: 241 TEATVQEVVAESLR----RFDKGGDLFYEQISALHKSVRGTDPDAALYWLCRMLDGGCDP 296
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+VR ASED+G ADP L A++ + A LG PE +++AQ VAYLA APKS +
Sbjct: 297 LYIARRVVRMASEDIGNADPRGLQLALNAWDAYERLGSPEGELMIAQAVAYLACAPKSNA 356
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A A+ ++S + VP+HLRNAPTKLM+ + YGKGY Y D+ +A +++
Sbjct: 357 VYTAFKMAKVDAKQSGTLD--VPIHLRNAPTKLMQALDYGKGYRYAHDEKDAYAAGENYF 414
Query: 539 PPSLEGYKFLD 549
P +++G ++ +
Sbjct: 415 PEAMKGRRYYE 425
>gi|94969641|ref|YP_591689.1| recombination factor protein RarA [Candidatus Koribacter versatilis
Ellin345]
gi|94551691|gb|ABF41615.1| Recombination protein MgsA [Candidatus Koribacter versatilis
Ellin345]
Length = 447
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/407 (47%), Positives = 259/407 (63%), Gaps = 29/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ GQ+H+L+P LR + + + S+IFWGPPG GKTTLAK I +
Sbjct: 17 PLADRMRPRTLDEFAGQEHILAPGKPLRVQIDRDDIGSLIFWGPPGVGKTTLAKII--AA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ SAV SG+K+++ + DA ++R + RT+LFVDE+HRFN++QQD+FLP +E
Sbjct: 75 MTHADFIEFSAVLSGIKEIKQVMADAERVR-QYGTRTILFVDEIHRFNRAQQDAFLPHVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF + + LLSR RV TL PL + LL+RA+ D GL++
Sbjct: 134 RGNIKLIGATTENPSFEVNSALLSRSRVYTLTPLTEEQIVGLLRRALTDTERGLAE---- 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V A+ + + GDAR N LE++A A +
Sbjct: 190 LHVTAEDIALARIAAYASGDARSGYNVLEVAAQAAG--------------------ATSE 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T +A Q + L YD++GEEHYNLISALHKS+R +D DAA+YWLARM+E GE L
Sbjct: 230 RIITEQIVADALQRRVLRYDKSGEEHYNLISALHKSVRNSDPDAALYWLARMIESGEDAL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR A ED+GLADP AL ++ A FLGMPE N+ LAQ V YL++APKS ++
Sbjct: 290 YIARRVVRMAVEDIGLADPNALALTLAAKDAIDFLGMPEANLALAQAVVYLSIAPKSNAL 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A G Q + ++ + VPLHLRNAPTKLMKEIGYG GY Y D
Sbjct: 350 YTAYGDVQADVEKTAA--DPVPLHLRNAPTKLMKEIGYGSGYQYAHD 394
>gi|406606795|emb|CCH41831.1| hypothetical protein BN7_1370 [Wickerhamomyces ciferrii]
Length = 546
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/458 (41%), Positives = 278/458 (60%), Gaps = 20/458 (4%)
Query: 97 EPSPLFKRLKTRHDVDSTTALHVPHA--PLSERMRPVNINDVVGQDHLLSPNSLLRSAVC 154
+P+ K T D DS L A PLSER+RP +++ VGQ HL+ P +LR +
Sbjct: 92 KPNTSLKTPITTPDKDSEIKLLRQQAQLPLSERLRPRTLDEYVGQSHLIGPQGILRGFID 151
Query: 155 SNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK 214
++ +PS+I WGPPG GKTT+A+ I + KFV L+A +SG+ D+R E+ K
Sbjct: 152 NDTIPSLILWGPPGVGKTTIARII--AARTKQKFVELNATSSGISDLRKIFENCSKEWFL 209
Query: 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLN 274
+ ++T++F DE+HR+NK+QQD FLP +E G V IGATTENPSF L LLSRC+V TLN
Sbjct: 210 TKRKTIVFCDEIHRYNKTQQDFFLPFVEKGECVLIGATTENPSFQLNNALLSRCKVFTLN 269
Query: 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
L+ +++ +L + + +N + + + +AI ++ +GD+R+++N +E+
Sbjct: 270 KLQINEIHRILNKGILHINKVRKLVFNKSLLTFDKEAINYIADLSNGDSRISINLMEL-- 327
Query: 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISA 394
+ + D +P V ++D + Q HL YDR G++HY+ ISA
Sbjct: 328 -----------IDSHYSNVKPDAKTPGNIAVKVEDIRPVLQKTHLLYDRVGDQHYDTISA 376
Query: 395 LHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQAC 454
HKS+RG+D DAA+++L +ML GGE PLYIARR++R ASEDVG+ D L A++ YQA
Sbjct: 377 FHKSIRGSDPDAAMWYLGKMLSGGENPLYIARRMIRIASEDVGVLDESCLPFAIAAYQAV 436
Query: 455 HFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVI-RESVGQNEGVPLHLRNAPTK 513
F+G+PE ++ L QC LA APKS+ IYRA + + E +PLHLRNAPTK
Sbjct: 437 TFVGLPEADLALVQCAVKLAKAPKSVEIYRAWNYIKSIYANEPTKAGLPIPLHLRNAPTK 496
Query: 514 LMKEIGYGKGYIYTPDDPSAK--QSFLPPSLEGYKFLD 549
LMKE+ YGK Y Y P+ + K Q +LP ++ KFLD
Sbjct: 497 LMKEMDYGKEYKYNPNYKNGKVRQDYLPEQIKDMKFLD 534
>gi|260662096|ref|ZP_05862992.1| helicase [Lactobacillus fermentum 28-3-CHN]
gi|260553479|gb|EEX26371.1| helicase [Lactobacillus fermentum 28-3-CHN]
Length = 448
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/427 (46%), Positives = 263/427 (61%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + GQD L+ +L + +RLPS+I WGPPG GKTTLA+ I
Sbjct: 17 PLANRVRPRELAEFFGQDQLVGTGKVLSELIEQDRLPSLILWGPPGVGKTTLAEIIAQKT 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAV S +KD++ +E A + +RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 77 KA--KFITFSAVNSSIKDIKQVME-AATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF L LLSRC+V L L + +L RA+ N
Sbjct: 134 RGEIILIGATTENPSFELNAALLSRCKVFVLRALDKGALVKILHRALHHPN-----GFAD 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +E + + +GDAR+ALN LE++ + + +G +
Sbjct: 189 LEITVEDGVLEAIANFANGDARMALNTLEMAVLNG----------------QRNG---HQ 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + L YDRAG+EHY+LISALHKS+R +D DAA+YW +RML GGE+PL
Sbjct: 230 VKLTNADLTQLTSTRSLRYDRAGDEHYDLISALHKSIRNSDVDAAVYWCSRMLAGGEEPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFA+EDVGLAD AL A + +QAC FLGMPEC+V L +CV YLA APKS ++
Sbjct: 290 YIARRLVRFAAEDVGLADTNALQVATNTFQACQFLGMPECDVHLTECVIYLAAAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K+I+++ N VPL +RNAPTKLMKE+ YGKGY Y D D +P
Sbjct: 350 YAARNRAKKIIKQT--GNLPVPLQIRNAPTKLMKELDYGKGYQYAHDSSDRLTTMQTMPD 407
Query: 541 SLEGYKF 547
+ G K
Sbjct: 408 EISGAKL 414
>gi|184155391|ref|YP_001843731.1| recombination factor protein RarA [Lactobacillus fermentum IFO
3956]
gi|183226735|dbj|BAG27251.1| helicase [Lactobacillus fermentum IFO 3956]
Length = 448
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/427 (46%), Positives = 263/427 (61%), Gaps = 31/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + + GQD L+ +L + +RLPS+I WGPPG GKTTLA+ I
Sbjct: 17 PLANRVRPRELAEFFGQDQLVGTGKVLSELIEQDRLPSLILWGPPGVGKTTLAEIIAQKT 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ SAV S +KD++ +E A + +RTV+F+DE+HRFNK+QQD+FLP +E
Sbjct: 77 KA--KFITFSAVNSSIKDIKQVME-AATANHQFGERTVVFIDEIHRFNKAQQDAFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF L LLSRC+V L L + +L RA+ N
Sbjct: 134 RGEIILIGATTENPSFELNAALLSRCKVFVLRALDKGALVKILHRALHHPN-----GFAD 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +E + + +GDAR+ALN LE++ + + +G +
Sbjct: 189 LEITVEDGVLEAIANFANGDARMALNTLEMAVLNG----------------QRNG---HQ 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + L YDRAG+EHY+LISALHKS+R +D DAA+YW +RML GGE+PL
Sbjct: 230 VKLTNADLTQLTSTRSLRYDRAGDEHYDLISALHKSIRNSDVDAAVYWCSRMLAGGEEPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFA+EDVGLAD AL A + +QAC FLGMPEC+V L +CV YLA APKS ++
Sbjct: 290 YIARRLVRFAAEDVGLADTNALQVATNTFQACQFLGMPECDVHLTECVIYLAAAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A A+K+I+++ N VPL +RNAPTKLMKE+ YGKGY Y D D +P
Sbjct: 350 YAARNRAKKIIKQT--GNLPVPLQIRNAPTKLMKELDYGKGYQYAHDSSDRLTTMQTMPD 407
Query: 541 SLEGYKF 547
+ G K
Sbjct: 408 EISGAKL 414
>gi|302343350|ref|YP_003807879.1| ATPase AAA [Desulfarculus baarsii DSM 2075]
gi|301639963|gb|ADK85285.1| AAA ATPase central domain protein [Desulfarculus baarsii DSM 2075]
Length = 452
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 215/428 (50%), Positives = 277/428 (64%), Gaps = 29/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP I+++VGQ+HLL P LR + R S+I WGPPGTGKTTLA+ +
Sbjct: 16 APLAERMRPRAIDEIVGQNHLLGPGKALRRLLEEGRPISLILWGPPGTGKTTLARLLAQ- 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F SAV SGV DVR AVE+AR ++K +RT LFVDE+HRFNKSQQD+FLP +
Sbjct: 75 -LWDTDFTEFSAVLSGVADVRRAVEEARA-KLKGGRRTTLFVDEIHRFNKSQQDAFLPHV 132
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I +GATTENPSF + LLSR RVL L+PL+ + ++L+RA+ D GL G
Sbjct: 133 ESGVITLVGATTENPSFEVAPALLSRLRVLVLHPLEEDHLALILERALADAERGL----G 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G VE+ +A + + GDAR L LE++ A + + +K ++Q
Sbjct: 189 GRDVELTPEAKQHMIQAAYGDARRLLGTLEVA--VEAAPLGLGGLKRIDQ---------- 236
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
AL A++A + L YD+AGEEHYNLISALHKS+RG+D DAA+YWL RMLE GE P
Sbjct: 237 -AL-----AEDAVGRRMLRYDKAGEEHYNLISALHKSLRGSDVDAALYWLTRMLEAGEDP 290
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+I RRL RFA EDVGLAD ALNQ V+ + A +G+PE +++LAQ V YLALAPKS +
Sbjct: 291 HFILRRLTRFACEDVGLADSYALNQLVAAWSAFDKIGLPEADLMLAQAVVYLALAPKSNA 350
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLP 539
+Y A+ A + +R G E VPL +RNAPTKLMK + YGKGY Y D A Q ++P
Sbjct: 351 VYAAMKAVRDDVRR-FGPLE-VPLQIRNAPTKLMKNLDYGKGYEYPHDFAEAMVGQEYMP 408
Query: 540 PSLEGYKF 547
P L G ++
Sbjct: 409 PELVGKRY 416
>gi|297565423|ref|YP_003684395.1| AAA ATPase [Meiothermus silvanus DSM 9946]
gi|296849872|gb|ADH62887.1| AAA ATPase central domain protein [Meiothermus silvanus DSM 9946]
Length = 425
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/430 (47%), Positives = 259/430 (60%), Gaps = 43/430 (10%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL ER+RP + +VVGQDHL P LR + RL S+I WGPPG+GKTTLA+ +
Sbjct: 8 APLPERLRPKTLEEVVGQDHLTGPGKPLRRMLEVGRLQSLILWGPPGSGKTTLARLLAEG 67
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V + + LSAV +GV+++++AV AR++ VLF+DE+HRFNKSQQD+ LP +
Sbjct: 68 V--GQEMLALSAVNAGVREIKEAVARAREV-----GGLVLFLDEIHRFNKSQQDALLPHV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF + L SR RV L PL+P ++ LL+RA+ L
Sbjct: 121 ESGLLTLIGATTENPSFEVNPALRSRARVYVLRPLEPEEIRQLLERALQHPEGLLG---- 176
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
VE A+E L GD R AL+ALE++A A
Sbjct: 177 ---VEAEPKALELLAQASMGDVRRALSALELAATLAGK---------------------- 211
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL+ KE L D+ GE Y+LISALHKS+RGN DAA+Y+LARMLEGG P
Sbjct: 212 ---ITLESVKEGLGAGTLGLDKGGEHFYDLISALHKSVRGNHVDAALYYLARMLEGGVDP 268
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRLVR A ED+GLADPLAL AV+ Q FLG PE + LA+ YLALAPKS +
Sbjct: 269 LYLARRLVRMAVEDIGLADPLALRLAVAAQQTYDFLGSPEGELALAELTIYLALAPKSNA 328
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQSFLP 539
+Y A AQ++ R+ + VPLHLRNAPT LMK +GYGK Y Y DDP S Q++LP
Sbjct: 329 VYVAWKKAQELARQH--PDAPVPLHLRNAPTGLMKSLGYGKAYAYYHDDPEGSFAQAYLP 386
Query: 540 PSLEGYKFLD 549
LEG +
Sbjct: 387 EGLEGLTLYE 396
>gi|254449265|ref|ZP_05062712.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
gi|198261120|gb|EDY85418.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
Length = 443
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/425 (48%), Positives = 273/425 (64%), Gaps = 37/425 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + D GQ HL++P LR A+ S++L S+IFWGPPGTGKTTLA+ I
Sbjct: 19 PLADRLRPRRLEDYCGQQHLIAPGKPLRKAIESDQLHSMIFWGPPGTGKTTLARLIAEYC 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ LSAV SGVKD+R AV++A+ R + + TVLFVDEVHRFNKSQQD+FLP IE
Sbjct: 79 DA--EFMTLSAVLSGVKDIRAAVDEAKLRRRQDGRATVLFVDEVHRFNKSQQDAFLPHIE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I F+GATTENPSF L LLSR R L D+E ++ RA+ D +GL + G
Sbjct: 137 DGTIFFVGATTENPSFELNNALLSRVRTYVLKSFDDDDIEQIVDRALQDERDGLGQL--G 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISA--ITAAVRVPVKEVKEVEQEDESDGCSP 360
R+E +A E L + DGDAR LN LE+SA + V++++E
Sbjct: 195 VRLE--PEARELLLRSADGDARKVLNLLEVSADFTERGGVIGVRQMRE------------ 240
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V+ V+L +D+ G+ Y+ ISALHKS+RG+ D A+YW RM++GG
Sbjct: 241 -VSAVSLR-----------RFDKGGDLFYDQISALHKSVRGSSPDGALYWFCRMIDGGCD 288
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRL+R ASED+G ADP AL+ A+ +A LG PE + LA V+YLA APKS
Sbjct: 289 PLYIARRLIRMASEDIGNADPRALSIAMDACEAFERLGSPEGELSLAHAVSYLACAPKSN 348
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A + ++S G E VP+HLRNAPTKLMKE+GYGK Y Y+ D+P SA Q++
Sbjct: 349 AVYTAFKGAMALAKDS-GTAE-VPVHLRNAPTKLMKELGYGKAYRYSHDEPGAYSAGQTY 406
Query: 538 LPPSL 542
LP L
Sbjct: 407 LPEEL 411
>gi|335357684|ref|ZP_08549554.1| recombination factor protein RarA [Lactobacillus animalis KCTC
3501]
Length = 438
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/428 (46%), Positives = 265/428 (61%), Gaps = 35/428 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ V GQ HLL P +LR + +R+ S+I WGPPG GKTTLA+ I
Sbjct: 14 PLASRLRPEKLDQVFGQTHLLGPGKILRELITQDRVTSMILWGPPGVGKTTLAQVIAKQT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ SAVTSG+K+++ +++A ++T++FVDE+HRFNK+QQD+FLP +E
Sbjct: 74 KAG--FISFSAVTSGIKEIKKIMQEAEA-NTAYGQKTIVFVDEIHRFNKAQQDAFLPFVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSIV IGATTENPSF + + LLSR +V L L + LL RA + G K +
Sbjct: 131 NGSIVLIGATTENPSFEINSALLSRLKVFILKQLTKEQLVELLDRACRE---GFEKELTA 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + AI DGDAR ALN LE+ V DG
Sbjct: 188 SKTLLEQIAI-----FSDGDARNALNTLEMLVDNGNV--------------SQDGTLE-- 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ D + K L YD+ GE+HY+LISALHKSMR +D DAAIYWL RML G E PL
Sbjct: 227 --LSDDLLSQVLGEKTLKYDKNGEDHYDLISALHKSMRNSDVDAAIYWLNRMLAGSEDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+RFASED+GLAD ALN V+ +QA F+GMPECNV L Q V YL+LAPKS ++
Sbjct: 285 YIARRLLRFASEDIGLADNNALNLVVNVFQAYQFIGMPECNVHLTQAVIYLSLAPKSNAV 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY---IYTPDDPSAKQSFLP 539
Y+A K +++++ NE VPL +RN TKLMKE+GYGKGY + D + Q+ +P
Sbjct: 345 YKATTRVAKDVKQTL--NEPVPLQIRNGTTKLMKELGYGKGYELAHFAKDKLTTMQT-MP 401
Query: 540 PSLEGYKF 547
+L G+ +
Sbjct: 402 DNLVGHTY 409
>gi|395853811|ref|XP_003799395.1| PREDICTED: ATPase WRNIP1 isoform 2 [Otolemur garnettii]
Length = 637
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/442 (45%), Positives = 261/442 (59%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ ++ +L RS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 223 PLADKMRPDTLQDYIGQSRVVGQETLFRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 282
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 283 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 335
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+ LLSRCRV+ L L + +L RA++ + + S
Sbjct: 336 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 377
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T V + A++ L DGDAR LN L+++ + ++
Sbjct: 378 PTDPLSHSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 431
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 432 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 491
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 492 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVATYQGCHFIGMPECEVLLAQ 551
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 552 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 611
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 612 MYSEP-VDQEYLPEELRGVDFF 632
>gi|432916881|ref|XP_004079425.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Oryzias latipes]
Length = 561
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/456 (43%), Positives = 266/456 (58%), Gaps = 57/456 (12%)
Query: 114 TTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
+ AL + PL+E +RP + + GQ + +LLRS + S +PS+I WGPPG GKTT
Sbjct: 147 SRALFASNKPLAEALRPNTLEEYFGQSKAVGQQTLLRSLLESQEIPSVILWGPPGCGKTT 206
Query: 174 LAKAIVNSVAV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
LA I ++ + +FV LSA ++ +VR+ ++ A+ ++T+LF+DE+HRFNK
Sbjct: 207 LAHIIASASKKNGTARFVTLSATSASTSEVREVIKQAQNELRLCKRKTILFIDEIHRFNK 266
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV-- 289
SQQ + LLSRCRVL L L + +L RA+
Sbjct: 267 SQQ-------------------------VNAALLSRCRVLVLEKLSVEAMSSILNRAIAM 301
Query: 290 -------DDVNN---GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
D NN G +V + A++ + CDGDAR+ LN+L+++
Sbjct: 302 LGIKIGGQDSNNLKDGDQTDGSEAQVYIEQKALDTIAFLCDGDARIGLNSLQLA------ 355
Query: 340 RVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSM 399
V+ ++++ E +VT + KE Q H+ YD+AGEEHYN ISALHKSM
Sbjct: 356 ---VQAQTSLQKQQE--------VVVTEEHIKEGLQRSHILYDKAGEEHYNCISALHKSM 404
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+ +A++YWL RMLEGGE PLY+ARRL+RFASEDVGLADP AL QAVS +QACHFLGM
Sbjct: 405 RGSHENASLYWLGRMLEGGEDPLYVARRLIRFASEDVGLADPAALTQAVSAFQACHFLGM 464
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PEC VILAQCV YLA APKS+ IY+A + +R G VPLHLRNAPTKLMK++G
Sbjct: 465 PECEVILAQCVIYLARAPKSVEIYQAYSNVKACLRNHKGPLPSVPLHLRNAPTKLMKQLG 524
Query: 520 YGKGYIYTPD-DPSAKQSFLPPSLEGYKFLDWPKSN 554
Y KGY Y P +Q +LP L G F W S+
Sbjct: 525 YAKGYKYNPAFSRPVEQEYLPEELRGVNFFTWKGSH 560
>gi|388257890|ref|ZP_10135069.1| recombination factor protein RarA [Cellvibrio sp. BR]
gi|387939057|gb|EIK45609.1| recombination factor protein RarA [Cellvibrio sp. BR]
Length = 450
Score = 370 bits (950), Expect = e-99, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 268/430 (62%), Gaps = 30/430 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP N++D +GQ+HLLS LR A+ +L S+I WGPPG GKT+LAK
Sbjct: 11 YQPLAARMRPRNLDDYIGQEHLLSVGKPLREAITRGQLHSMILWGPPGVGKTSLAKLFAE 70
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+F LSAV SGVK++R AV A++ R+ S ++T+LFVDEVHRFNKSQQD+FLP
Sbjct: 71 QADA--RFESLSAVLSGVKEIRAAVATAQQERISSRRKTILFVDEVHRFNKSQQDAFLPY 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+ +FIGATTENPSF L LLSRCRV L L+P ++ +L++A+DD GL
Sbjct: 129 VEDGTFIFIGATTENPSFELNNALLSRCRVYVLRGLQPEQLKDVLQQALDDNERGL---- 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG + +++D + L DGDAR ALN LEISA A + K + Q+
Sbjct: 185 GGQDIRIDNDTLMTLAQAADGDARKALNLLEISADLAE---DAGDHKIINQQ-------- 233
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+A V D + +D+ G+ Y ISALHKS+RG+ D A+YWLARML+GG
Sbjct: 234 VIAEVLASDVRR--------FDKGGDIFYEQISALHKSVRGSSPDGALYWLARMLDGGCD 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL +S + LG PE + +AQ V YLA APKS
Sbjct: 286 PLYIARRVVRMASEDIGNADPRALPLCLSAWDVQERLGSPEGQLAIAQAVVYLACAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A +R + VP+HLRNAPTKLMK + YG Y Y D+P +A +++
Sbjct: 346 AVYNAFNQVMADVRSQPAFD--VPMHLRNAPTKLMKSMDYGAEYRYAHDEPGAYAAGENY 403
Query: 538 LPPSLEGYKF 547
LP + ++
Sbjct: 404 LPEEIAQARY 413
>gi|78485111|ref|YP_391036.1| recombination factor protein RarA [Thiomicrospira crunogena XCL-2]
gi|78363397|gb|ABB41362.1| Recombination protein MgsA [Thiomicrospira crunogena XCL-2]
Length = 453
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 205/425 (48%), Positives = 274/425 (64%), Gaps = 18/425 (4%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PLS+R+RP ++D VGQ HLL L S R+ S+IFWGPPGTGKTTLA+ I
Sbjct: 6 YQPLSDRLRPQTLDDFVGQTHLLGKGRALSKMFESGRMHSMIFWGPPGTGKTTLARLIAK 65
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F+ LSAV GVK+VR AVE A+ R + + ++LFVDEVHRFNK+QQD+FLP
Sbjct: 66 QSDL--QFLNLSAVLDGVKEVRAAVEQAKLHRQQFQQGSLLFVDEVHRFNKAQQDAFLPF 123
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+ +FIGATTENPSF L LLSR RV L L D++ +L RA + +N LS+ +
Sbjct: 124 VEDGTFIFIGATTENPSFELNNALLSRARVYVLRSLDEDDLQQVLNRATELLNQELSQPL 183
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
R+E DA L DGDAR LN LE A+ A +P E + E+D P
Sbjct: 184 ---RIE--PDAQAALIQFSDGDARRLLNLLE-QAVDFAEVIPSDEA-----DAETDENPP 232
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ ++T+++ +E Q +D+ GE Y+ ISALHKS+RG+DA+AA+YWL RML+GG
Sbjct: 233 GLVVLTVENCREVIQGGVRRFDKGGEAFYDQISALHKSIRGSDANAALYWLTRMLDGGVD 292
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
Y+ARRL+R ASED+G AD AL+ V+ +A LG PE ++ LAQ YLA+APKS
Sbjct: 293 ARYLARRLIRMASEDIGNADIRALDVTVNAAEAYERLGSPEGDLALAQAAVYLAVAPKSN 352
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA K I+E G E VPLHLRNAPTKLM+ + YG+GY Y D+P +A +S+
Sbjct: 353 AVYMGYKAALKDIKEH-GSYE-VPLHLRNAPTKLMQNLSYGEGYRYAHDEPEAYAAGESY 410
Query: 538 LPPSL 542
P +
Sbjct: 411 FPEEM 415
>gi|373458009|ref|ZP_09549776.1| AAA ATPase central domain protein [Caldithrix abyssi DSM 13497]
gi|371719673|gb|EHO41444.1| AAA ATPase central domain protein [Caldithrix abyssi DSM 13497]
Length = 445
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 276/429 (64%), Gaps = 32/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++++VVG + ++ P S LR + S LPS+IFWGPPG GKTTLA+ + +
Sbjct: 20 PLAERVRPQSLDEVVGHEKIIGPQSTLRKQIASGYLPSMIFWGPPGVGKTTLARLLAREL 79
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
Y+FV +SAVTSGVK+V+ +E+AR R N+ TVLF+DE+HRFNK+QQD+ L +E
Sbjct: 80 --KYRFVSISAVTSGVKEVKQIIEEARSQRRYYNQATVLFIDEIHRFNKAQQDALLHAVE 137
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++ +GATTENPSF +I PLLSRC+V+ LN L D++ +++RA++ K V
Sbjct: 138 DGTLILMGATTENPSFEVIAPLLSRCQVIQLNELSASDLKTIVQRAME-------KDVLL 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +++ + L + GDAR LN LE++ A E DG
Sbjct: 191 QQYDIDLQGFDALLAFGAGDARRTLNLLEMTFHLA----------------EKDGKK--- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + K+A L YD+ G+ HY+ ISA KS+RG+D DAA+Y+LA MLE GE P+
Sbjct: 232 VIITEELVKQAVDQSPLYYDKHGDYHYDTISAFIKSVRGSDPDAAVYYLAVMLEAGEDPV 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRL+ ASED+G A+P AL A + ++A +GMPE +ILAQ YLA PKS +
Sbjct: 292 FIARRLIVLASEDIGNAEPYALMLANTAFEAVKKIGMPEARIILAQVTTYLASVPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ AQ+V+R+ ++ VPLHLRNAPT LMK++ YG GY Y D P +Q++LP
Sbjct: 352 YLAINRAQEVVRKKGPKS--VPLHLRNAPTGLMKDLKYGVGYKYPHDFPGHFVRQNYLPQ 409
Query: 541 SLEGYKFLD 549
LE F +
Sbjct: 410 GLEDELFYE 418
>gi|91094825|ref|XP_971125.1| PREDICTED: similar to werner helicase interacting protein
[Tribolium castaneum]
Length = 494
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 197/430 (45%), Positives = 269/430 (62%), Gaps = 33/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA---KAIV 179
PL+++++P ++D +GQ H+L N++LR+ + +P+++ WGPPG GKT+L+ + I
Sbjct: 93 PLAKQLQPKCLDDFMGQSHVLGENTVLRTLLEKGDIPNMVLWGPPGCGKTSLSGVIQGIC 152
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
S KFV L A T+GVKDV++ V A KL+ K RTVLF+DE+HRFNK QQD FL
Sbjct: 153 KSNPTKLKFVSLCAATAGVKDVQNIVS-AAKLQQKFGCRTVLFMDEIHRFNKKQQDIFLL 211
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-NGLSK 298
+E G I+ +GATTENPSF + + LLSRCRV+ L L P + +L+R + N + K
Sbjct: 212 HVEKGDIILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGARNFNVEVVDK 271
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
V DA+++L DGDAR+AL L++ V Q +E
Sbjct: 272 GARSKGFAVQADALKWLADISDGDARIALGNLQL----------------VLQYNEDKN- 314
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+VT++D KE + HL YDR GEEHYN+ISA+HKS+RG+D +AA+YW RM+ G
Sbjct: 315 ----KVVTIEDIKEKIKKSHLLYDRKGEEHYNVISAMHKSIRGSDPNAALYWTTRMIVSG 370
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARR+VR ASED+G ADP AL AVS Q C LGMPEC+V+LAQC YLA APK
Sbjct: 371 EDPLYIARRMVRAASEDIGNADPRALQLAVSTMQGCQLLGMPECDVLLAQCAIYLARAPK 430
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFL 538
S AL A+++I+ G VP+HLRNAPT+LMK++GYGK ++ ++
Sbjct: 431 SREADSALARAKQLIKSCEGLQPSVPMHLRNAPTRLMKDLGYGKL-------EGDERYYM 483
Query: 539 PPSLEGYKFL 548
PP L+ F
Sbjct: 484 PPELKNVDFF 493
>gi|332246197|ref|XP_003272239.1| PREDICTED: ATPase WRNIP1 isoform 4 [Nomascus leucogenys]
Length = 613
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 199/442 (45%), Positives = 260/442 (58%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 199 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 258
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 259 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 311
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+ LLSRCRV+ L L + +L RA++ + + S
Sbjct: 312 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 353
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 354 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 407
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 408 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 467
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 468 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 527
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 528 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 587
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 588 MYSEP-VDQEYLPEELRGVDFF 608
>gi|157103374|ref|XP_001647950.1| werner helicase interacting protein [Aedes aegypti]
gi|108884173|gb|EAT48398.1| AAEL000550-PA [Aedes aegypti]
Length = 560
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 209/478 (43%), Positives = 287/478 (60%), Gaps = 46/478 (9%)
Query: 88 QEKEKDRE-IEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPN 146
+EKEK+R+ ++P K + V ++P L+E+MRP ++D +GQ+ ++ N
Sbjct: 110 EEKEKERDKVKPD------KNKAKVGDEEGSNIP---LAEKMRPDELSDYIGQEQIIGKN 160
Query: 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAVTSGVKDVRDA 204
++LR+ N +PS+I WGPPG GKTTLA I S KFV LSA SGV DV++A
Sbjct: 161 TVLRTLFEKNTIPSMILWGPPGCGKTTLAHIIAAHCKKHGSMKFVKLSATMSGVNDVKEA 220
Query: 205 VEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPL 264
V+ A+ + ++T++F+DE+HRFNK QQD FLP +E G+I IGATTENPSF L + L
Sbjct: 221 VKLAKN-DLAFKRKTIMFMDEIHRFNKLQQDIFLPHVESGTITLIGATTENPSFSLNSAL 279
Query: 265 LSRCRVLTLNPLKPHDVEILLKRAVDDV------NNGLSKSVGGT----RVEVNHDAIEF 314
LSRCRV+ L L V +LKRA+ NN + G R+ ++ + I +
Sbjct: 280 LSRCRVIVLEKLGVEAVMKILKRALPQYKTVMFENNNRVPDIRGLPFVPRMMISAETIRW 339
Query: 315 LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAF 374
L CDGDAR+ALN+L+++ T A R + E+ES + ++LD+ KE
Sbjct: 340 LAEICDGDARIALNSLQLALNTVAAR---------QDEEES-----ALKRISLDEIKEGI 385
Query: 375 QCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASE 434
+ HL YDR G++HY LISALHKS+R +D +AA+YW +RML GE P Y+ RR++R ASE
Sbjct: 386 KKSHLMYDRKGDQHYELISALHKSIRASDDNAALYWCSRMLVSGEDPRYLVRRMIRMASE 445
Query: 435 DVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIR 494
D+GLAD AL A S A +GMPE + I+A C YLA APKS +Y A +
Sbjct: 446 DIGLADTNALTVATSTLAAVQAVGMPEADCIIAHCAVYLARAPKSREVYNAFNRC----K 501
Query: 495 ESVGQNEG----VPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPPSLEGYKFL 548
S+GQN+G VPLHLRNA TKLMK + YG GY D S Q ++P LE +
Sbjct: 502 ASIGQNKGPMPSVPLHLRNATTKLMKSLKYGAGYNLQHKDESGLQ-YMPEGLENENYF 558
>gi|410958604|ref|XP_003985906.1| PREDICTED: ATPase WRNIP1 [Felis catus]
Length = 442
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 202/436 (46%), Positives = 260/436 (59%), Gaps = 34/436 (7%)
Query: 140 DHLLSPNSLLRSAVCSNRLPS---------IIFWGPPGTGK--TTLAKAIVN-SVAVSYK 187
D LS ++ VC +P+ + P G + TTLA I N S S +
Sbjct: 9 DPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLNPAGHAEPTTTLAHIIANNSKKHSIR 68
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +E G+I
Sbjct: 69 FVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTIT 128
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGT---- 303
IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S T
Sbjct: 129 LIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLS 188
Query: 304 ---------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354
V + A++ L DGDAR LN L+++ + +++ +
Sbjct: 189 HSSNSSSEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRKMFCKKS 242
Query: 355 SDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D A++YWLARM
Sbjct: 243 GQTYSPSRVLITENDVKEGLQQSHILYDRAGEEHYNCISALHKSMRGSDQSASLYWLARM 302
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLA 474
LEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQCV Y A
Sbjct: 303 LEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFA 362
Query: 475 LAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPS 532
APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P +P
Sbjct: 363 RAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEP- 421
Query: 533 AKQSFLPPSLEGYKFL 548
Q +LP L G F
Sbjct: 422 VDQEYLPEELRGVDFF 437
>gi|358449011|ref|ZP_09159503.1| recombination factor protein RarA [Marinobacter manganoxydans
MnI7-9]
gi|357226806|gb|EHJ05279.1| recombination factor protein RarA [Marinobacter manganoxydans
MnI7-9]
Length = 445
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 203/441 (46%), Positives = 273/441 (61%), Gaps = 31/441 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS A PL+ RMRP ++ND VGQ HL+ P LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFAESAGFRPLAARMRPASLNDYVGQAHLVGPGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N +S++ V SAV SGVK++R VE AR + + T+LFVDEVHRFNK
Sbjct: 63 TTFAQLLANVSDLSFETV--SAVLSGVKEIRAVVERARNRKQSQGRDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D+ LL+RA+
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEEEDILQLLRRALT- 179
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
V+ G G R+ V+ D + + + GDAR ALN LE++A ++ +
Sbjct: 180 VDEGF-----GGRLRVDEDVLTLMAAASGGDARRALNILEVAA-------------DLAE 221
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
DE+ VT D ++ Q +D+ G+ Y+ ISALHKS+RG+D D ++YWL
Sbjct: 222 PDEAG-----TDRVTADQLEQVMQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG PLY+ARRLVR ASED+G ADP AL ++ + A LG PE + LAQ V
Sbjct: 277 CRMLDGGCDPLYVARRLVRIASEDIGNADPRALQLSMEAWDAQERLGSPEGELALAQAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLALAPKS ++Y A IR+ + VP+HLRNAPTKLMK +G+G Y Y D+P
Sbjct: 337 YLALAPKSNAVYNAFNRCMADIRQD--PDYEVPVHLRNAPTKLMKSMGHGDTYRYAHDEP 394
Query: 532 ---SAKQSFLPPSLEGYKFLD 549
+A +S+LP ++ ++ +
Sbjct: 395 EAFAAGESYLPEAIHERRYYE 415
>gi|83645244|ref|YP_433679.1| recombination factor protein RarA [Hahella chejuensis KCTC 2396]
gi|83633287|gb|ABC29254.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [Hahella chejuensis KCTC 2396]
Length = 448
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 198/430 (46%), Positives = 268/430 (62%), Gaps = 31/430 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ RMRP I++ +GQ HLL + LR A+ ++L S+IFWGPPG GKT+LA+ +
Sbjct: 17 YAPLAARMRPRVIDEYIGQTHLLDADKPLRKALERDQLHSVIFWGPPGVGKTSLARLVAG 76
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+F+ LSAV SGVK++R+ + AR +S ++T++FVDEVHRFNKSQQD+FLP
Sbjct: 77 YTGA--EFITLSAVQSGVKEIREVSQRARA-NSQSGRKTIVFVDEVHRFNKSQQDAFLPY 133
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+ VFIGATTENPSF L LLSR RV L PL D+ LL+RA+ D NGL
Sbjct: 134 VEEGAFVFIGATTENPSFELNNALLSRARVYPLKPLTIDDLTALLQRALSDAENGL---- 189
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G T + D + + +GDAR ALN LE + ++ E G
Sbjct: 190 GQTSWSYDADLLRMIAEAANGDARQALNILET-------------MSDLADPGEQGGILS 236
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L ++ Q +D+ G+ Y+ ISALHKS+RG++ D A+YW ARML GG
Sbjct: 237 RELLASV------MQVSLKRFDKGGDAFYDQISALHKSVRGSNPDGALYWFARMLNGGCD 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP L+ A+S + LG PE + +AQ + YLA APKS
Sbjct: 291 PLYVARRVVRMASEDIGNADPRGLDLALSAWDVQERLGSPEGELAIAQAIVYLACAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA K+ ES + VP+HLRNAPTKLMKE+GYGK Y Y D+P +A +++
Sbjct: 351 AVYSAFNAAMKLAAES--PDYPVPVHLRNAPTKLMKEMGYGKEYRYAHDEPGAYAAGETY 408
Query: 538 LPPSLEGYKF 547
LP L+G +
Sbjct: 409 LPEELDGLRL 418
>gi|159899639|ref|YP_001545886.1| recombination factor protein RarA [Herpetosiphon aurantiacus DSM
785]
gi|159892678|gb|ABX05758.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus DSM
785]
Length = 459
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 209/440 (47%), Positives = 284/440 (64%), Gaps = 28/440 (6%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
D+ S A APL+ RMRP + + GQ ++ LLR + ++L S+I WGPPGT
Sbjct: 2 DLFSYQASQSNDAPLAARMRPRTLAEYEGQTKIVGEGRLLRRLIERDQLISLILWGPPGT 61
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTTLA+ I A S F LSAV++GV ++R V++A + R KRTVLF+DE+HR+
Sbjct: 62 GKTTLARIIAG--ASSAHFEPLSAVSAGVAELRKVVKEANERRGMYGKRTVLFIDEIHRW 119
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
NK+QQD+ LP +EDG++ IGATTENPSF + LLSRCRV+ L L+ ++ +++RA+
Sbjct: 120 NKAQQDAVLPAVEDGTVTLIGATTENPSFEINRALLSRCRVIVLEALEDAAIDKIIERAL 179
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
+D GL K +V+++ +A + L GDAR AL ALE +A+T +VP
Sbjct: 180 NDNERGLGKQ----QVQLSPEARDMLIHLASGDARAALTALEAAALT---QVP------- 225
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
E +G L+ L+ EA+Q +++AYD+ GE HY+ ISALHKS+R +D D +Y
Sbjct: 226 ----EPNGQR----LIDLEAIVEAYQRRNVAYDKTGELHYDAISALHKSVRDSDPDGGLY 277
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WLARMLEGGE PLY+ARR++R A ED+GLADPLAL V+ QA HF+G E + LAQ
Sbjct: 278 WLARMLEGGEDPLYVARRVIRMAVEDIGLADPLALGICVAAQQAVHFMGAGEGALALAQA 337
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
V YLA APKS ++YRA GA + + +NE VPLHLRNA T LMK +GYG GY Y D
Sbjct: 338 VVYLAQAPKSNAVYRAYGAVLHDVEAT--RNEPVPLHLRNAVTGLMKGLGYGSGYQYAHD 395
Query: 530 --DPSAKQSFLPPSLEGYKF 547
D +Q LPP+L G+++
Sbjct: 396 FKDAQVEQEHLPPNLAGHRY 415
>gi|192360498|ref|YP_001983014.1| ATPase, AAA family domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190686663|gb|ACE84341.1| ATPase, AAA family domain protein [Cellvibrio japonicus Ueda107]
Length = 447
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 197/430 (45%), Positives = 267/430 (62%), Gaps = 30/430 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP N++D +GQ+HLL+ LR A+ +L S+I WGPPG GKT+LAK
Sbjct: 12 YQPLAARMRPRNLDDYIGQEHLLAAGKPLREAITRGQLHSMILWGPPGVGKTSLAKLFAE 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +F LSAV SGVK++R AV A + R+ + ++T+LFVDEVHRFNKSQQD+FLP
Sbjct: 72 QA--NARFETLSAVMSGVKEIRAAVAAAEQERISTRRKTILFVDEVHRFNKSQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+ +FIGATTENPSF L LLSRCRV L L+P + ++++A+ D GL KS
Sbjct: 130 VEDGTFIFIGATTENPSFELNNALLSRCRVYVLRGLQPEQLIQVMRQALTDAERGLGKS- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+EV+ + + L DGDAR +LN LEI+A ++ QE E
Sbjct: 189 ---GLEVDDEVLNSLAQAADGDARKSLNLLEIAA-------------DLAQEQEG----- 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V ++ D +E +D+ G+ Y ISALHKS+RG+ D A+YWL RML+GG
Sbjct: 228 -VRVINEDVLREVLAADVRRFDKGGDIFYEQISALHKSVRGSSPDGALYWLVRMLDGGCD 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL +S + LG PE + +AQ V YLA APKS
Sbjct: 287 PLYIARRVVRMASEDIGNADPRALPLCLSAWDVQERLGSPEGELAIAQAVVYLACAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A +R + VPLHLRNAPTKLMK + YG Y Y D+P +A +++
Sbjct: 347 AVYNAFNQAMADVRTQPAYD--VPLHLRNAPTKLMKNMDYGAEYRYAHDEPGAYAAGENY 404
Query: 538 LPPSLEGYKF 547
LP ++ ++
Sbjct: 405 LPEAIADKRY 414
>gi|109069427|ref|XP_001090335.1| PREDICTED: ATPase WRNIP1 isoform 1 [Macaca mulatta]
Length = 640
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 199/442 (45%), Positives = 260/442 (58%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 226 PLADTMRPDTLQDYFGQSRAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 338
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+ LLSRCRV+ L L + +L RA++ + + S
Sbjct: 339 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 380
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 381 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 434
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 435 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 494
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 495 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 554
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 555 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 614
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 615 MYSEP-VDQEYLPEELRGVDFF 635
>gi|296197531|ref|XP_002746323.1| PREDICTED: ATPase WRNIP1 isoform 2 [Callithrix jacchus]
Length = 641
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 198/442 (44%), Positives = 260/442 (58%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 227 PLADKMRPDTLQDYFGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 286
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 287 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 339
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+ LLSRCRV+ L L + +L RA++ + + S
Sbjct: 340 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 381
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 382 PTDPLSHSSNSSSEPAIFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 435
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 436 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 495
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 496 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 555
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI ++ A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 556 CVVYFARAPKSIEVFSAYNNVKACMRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 615
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 616 MYSEP-VDQEYLPEELRGVDFF 636
>gi|390945698|ref|YP_006409458.1| AAA ATPase [Alistipes finegoldii DSM 17242]
gi|390422267|gb|AFL76773.1| AAA ATPase [Alistipes finegoldii DSM 17242]
Length = 424
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 201/438 (45%), Positives = 262/438 (59%), Gaps = 34/438 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP I+D +GQ+HL+ N + R + +PS I WGPPG GKTTLAK + +
Sbjct: 3 APLAERLRPKTIDDYIGQEHLVGKNGVFRKFFETGNVPSFILWGPPGVGKTTLAKIV--A 60
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAVTSGVKDVR+ +E A+K R K +LF+DE+HRFNKSQQDS L +
Sbjct: 61 TQLERPFFTLSAVTSGVKDVREVIESAKKQRFFDAKPPLLFIDEIHRFNKSQQDSLLGAV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF +I+PLLSRC+V L P++ D++ LL RA+ +
Sbjct: 121 EQGTVTLIGATTENPSFEVISPLLSRCQVYILRPMEDKDLQTLLDRALTT-----DAELK 175
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
VEV F S GDAR LN L+I A G +
Sbjct: 176 AREVEVRQTGALFKFSG--GDARKLLNILDILA----------------------GATDG 211
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + Q YD+ GE+HY++ISA KS+RG+D +AAIY+LARML GGE+P
Sbjct: 212 KLTITDQYVTDCLQQNIALYDKNGEQHYDVISAFIKSVRGSDPNAAIYYLARMLAGGEEP 271
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++ARRLV ASED+GLA+P AL A +C+ H +GMPE + LA+ YLA +PKS S
Sbjct: 272 RFLARRLVILASEDIGLANPNALLLANACFDTVHKIGMPEARITLAETTIYLATSPKSNS 331
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ A ++ N VPLHLRNAPTKLM + GYGKGY Y D A+Q FLP
Sbjct: 332 AYMAINKAMSLVEHDT-TNRPVPLHLRNAPTKLMDKAGYGKGYKYAHDFAGNFAEQEFLP 390
Query: 540 PSLEGYKFLDWPKSNTTD 557
+L G KF + N T+
Sbjct: 391 DTLAGTKFYEPNTGNATE 408
>gi|114605196|ref|XP_001159500.1| PREDICTED: ATPase WRNIP1 isoform 1 [Pan troglodytes]
Length = 640
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 199/442 (45%), Positives = 260/442 (58%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 338
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+ LLSRCRV+ L L + +L RA++ + + S
Sbjct: 339 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 380
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 381 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 434
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 435 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 494
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 495 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 554
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 555 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 614
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 615 MYSEP-VDQEYLPEELRGVDFF 635
>gi|344943643|ref|ZP_08782930.1| AAA ATPase central domain protein [Methylobacter tundripaludum
SV96]
gi|344260930|gb|EGW21202.1| AAA ATPase central domain protein [Methylobacter tundripaludum
SV96]
Length = 435
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 202/428 (47%), Positives = 269/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + D VGQ H+L P L A+ S RL S+IFWGPPGTGKTTLA+ I
Sbjct: 9 PLADRMRPTELADYVGQQHILKPGKPLYEAIASGRLHSMIFWGPPGTGKTTLARLIAQHS 68
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ +SAV SGVK++R AV +A+K++++ ++RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 69 DA--EFMPISAVLSGVKEIRAAVAEAKKIQLEQHRRTILFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ F+GATTENPSF L LLSR RV LN L D+ ++ +A+ D GL GG
Sbjct: 127 DGTVYFVGATTENPSFALNNALLSRARVYVLNALTADDLLAVIDKALTDKVRGL----GG 182
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ D + DGDAR LN LEI+ AA + G +
Sbjct: 183 LAIEMADDIKQQFAQAADGDARRLLNLLEIAVELAAAK---------------GGQAVNE 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A+ AKE +D GEE YN ISALHKS+RG+ DA++YWL RM++GG
Sbjct: 228 AI-----AKEVLSGGVRRFDNQGEEFYNQISALHKSVRGSSPDASLYWLCRMMDGGCDLS 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL ++ ++A LG PE + LAQ V YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALQICINAWEAQERLGSPEGELALAQAVVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+S + GVP+HLRNAPTKLMK + YGK Y Y ++P +A +++ P
Sbjct: 343 YMAYNAAMADARQS--GSLGVPVHLRNAPTKLMKSLDYGKEYRYAHNEPEAYAAGENYFP 400
Query: 540 PSLEGYKF 547
L G ++
Sbjct: 401 DELAGRQY 408
>gi|18426904|ref|NP_569079.1| ATPase WRNIP1 isoform 2 [Homo sapiens]
gi|17511930|gb|AAH18923.1| Werner helicase interacting protein 1 [Homo sapiens]
gi|119575491|gb|EAW55087.1| Werner helicase interacting protein 1, isoform CRA_c [Homo sapiens]
gi|123982094|gb|ABM82876.1| Werner helicase interacting protein 1 [synthetic construct]
gi|123996921|gb|ABM86062.1| Werner helicase interacting protein 1 [synthetic construct]
gi|189067919|dbj|BAG37857.1| unnamed protein product [Homo sapiens]
gi|410261710|gb|JAA18821.1| Werner helicase interacting protein 1 [Pan troglodytes]
gi|410289224|gb|JAA23212.1| Werner helicase interacting protein 1 [Pan troglodytes]
Length = 640
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 199/442 (45%), Positives = 260/442 (58%), Gaps = 48/442 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQ
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ------- 338
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+ LLSRCRV+ L L + +L RA++ + + S
Sbjct: 339 ------------------VNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 380
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 381 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 434
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 435 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 494
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 495 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 554
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 555 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 614
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 615 MYSEP-VDQEYLPEELRGVDFF 635
>gi|406994130|gb|EKE13173.1| hypothetical protein ACD_13C00072G0002 [uncultured bacterium]
Length = 409
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 201/446 (45%), Positives = 271/446 (60%), Gaps = 60/446 (13%)
Query: 123 PLSERMRPVNINDVVGQDHLLSP----NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
PL++++RP N+N++ G + LL + LL++ + + PS+IFWGPPG GKTTLA+ I
Sbjct: 3 PLADKIRPKNLNEMSGHEKLLGEGGIISELLKNTLQTGFFPSLIFWGPPGVGKTTLARII 62
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARK-----------LRVKSNKRTVLFVDEVH 227
+ + KF SAV + VK + +ED K K + V+F+DE+H
Sbjct: 63 ASET--NRKFYEFSAVNTSVKTIEKQLEDNGKNAPSNLWSQNTYSKKKDGVPVVFIDEIH 120
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
RFNK+QQD+ LP++E G I+F+GATTENPSF +I PLLSRCRV+ ++ L D+E ++ R
Sbjct: 121 RFNKAQQDALLPLVEQGKIIFMGATTENPSFEVIAPLLSRCRVVIMDQLSEKDLEEIIDR 180
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347
A+DD+ L K DA +FL +GDAR +N LEI+ ++ K
Sbjct: 181 ALDDLGKKLEK-----------DARKFLVQCSNGDARTCINVLEIA-------FHLQTGK 222
Query: 348 EVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAA 407
E+ T DD K+A Q L +D GEE YN ISALHKSMRG+D DAA
Sbjct: 223 EI----------------TFDDVKKALQKNQLTFDLQGEEFYNTISALHKSMRGSDPDAA 266
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YWLARMLE G+ P YIARRL RFASED+G+ DP AL AV+ +QAC +GMPEC + LA
Sbjct: 267 LYWLARMLEAGQDPTYIARRLTRFASEDIGIKDPQALVIAVAAFQACERIGMPECALALA 326
Query: 468 QCVAYLALAPKSISIYRALG-AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY 526
+ V Y A +PKS +Y A G AA V++ N VP+H+RNAPTKLMK++GYGK Y Y
Sbjct: 327 EAVVYFAKSPKSNELYIAYGKAADDVMKYG---NLPVPMHIRNAPTKLMKDVGYGKNYNY 383
Query: 527 TPDDPSAKQ----SFLPPSLEGYKFL 548
P K+ + P L+G K+L
Sbjct: 384 Y-HSPEGKKLPDIEYFPDKLKGTKYL 408
>gi|337286846|ref|YP_004626319.1| AAA ATPase central domain-containing protein [Thermodesulfatator
indicus DSM 15286]
gi|335359674|gb|AEH45355.1| AAA ATPase central domain protein [Thermodesulfatator indicus DSM
15286]
Length = 431
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 266/437 (60%), Gaps = 39/437 (8%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
+L P PL+ER+RP I+D VGQ H+L PN L + ++PS+I WGPPG GKTTLA
Sbjct: 3 SLFEPQRPLAERLRPQKISDFVGQKHILGPNKFLTLCLAKKKVPSLILWGPPGCGKTTLA 62
Query: 176 KAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ I +FV +SAV +G+K++R A++ A K ++T+LF+DE+HRFNK+QQD
Sbjct: 63 RLIAKETKT--EFVPISAVDAGIKELRKAIDLADK-GCSLGRQTLLFIDEIHRFNKAQQD 119
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
LP +E+G I+ IGATTENPSF +I PLLSR RV L L ++ ++LKRA+ D
Sbjct: 120 FLLPYVEEGKIILIGATTENPSFRVIAPLLSRVRVFVLKALSKKELLLILKRALKD---- 175
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
+ +G + V + +E+L GDAR+ALN LE +
Sbjct: 176 -PRGLGNKNILVEEEVLEYLAEFAQGDARLALNFLEDLVMNL------------------ 216
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
D P +TLD KE K L YD++GEEHYNL+SA HKS+RG+D DAAIYW+ RM+
Sbjct: 217 DEGQPK---LTLDIVKELELKKPLLYDQSGEEHYNLLSAFHKSLRGSDPDAAIYWMVRMI 273
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
E GE PL I RRLV A+EDVGLADP AL A++ FLG+PE + LAQ V Y+AL
Sbjct: 274 EAGEDPLVIVRRLVAAAAEDVGLADPKALQMALAAKDVVEFLGLPEGELALAQAVIYVAL 333
Query: 476 APKSISIYRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYIYTPD--D 530
APKS S Y+AL A RE V Q G VPLHLRN TK M+ IGYGK Y Y + +
Sbjct: 334 APKSNSAYQALNRA----REDV-QKYGALPVPLHLRNPETKFMRNIGYGKDYKYPHNFQE 388
Query: 531 PSAKQSFLPPSLEGYKF 547
Q +LP L+ ++
Sbjct: 389 GFVPQDYLPEELKDRRY 405
>gi|254468300|ref|ZP_05081706.1| AAA ATPase, central region [beta proteobacterium KB13]
gi|207087110|gb|EDZ64393.1| AAA ATPase, central region [beta proteobacterium KB13]
Length = 429
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 272/428 (63%), Gaps = 38/428 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E +RP I+DV+GQDHLL + +R+AV SN+LPSII WGPPG GKT++A AI NSV
Sbjct: 7 PLAEILRPKIIDDVIGQDHLLGDDCPIRNAVTSNKLPSIILWGPPGVGKTSIAYAIANSV 66
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+Y+F+ LSAV SGVKD+R+AV+ A + ++ K+T+LF+DEVHRFNKSQQD+FLP +E
Sbjct: 67 --NYEFISLSAVLSGVKDIREAVDKANFNKDQNQKKTMLFIDEVHRFNKSQQDAFLPHVE 124
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G FIGATTENPSF + + LLSRC+V LN L ++ +L +A+ N
Sbjct: 125 NGLFTFIGATTENPSFEVNSALLSRCQVYILNSLSNEALKTILNKALSIQEN-------- 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++++ + EF+ +GD R LN +E+ + + P++
Sbjct: 177 --IKLDEPSTEFIIEYANGDGRRLLNLVEVVYFYSKDK-PIE------------------ 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V +D K+ + +D+ GE+ Y+ ISALHKS+RG+D DA+IYWL RML+GG PL
Sbjct: 216 --VDIDLIKKIASSSYRRFDKGGEQFYDQISALHKSVRGSDPDASIYWLQRMLDGGADPL 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR++R A ED+GLADP A A+ YQ LG PE + L V YLA APKS +
Sbjct: 274 YLARRIIRIAIEDIGLADPKAQTIALEAYQIFERLGTPEGELALTNAVLYLAAAPKSNAA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y+A ++ + + N VP+HLRNAPTKLMK+IGYGK Y Y ++P +A + + P
Sbjct: 334 YQAYNMSKAFVSDH--NNYDVPIHLRNAPTKLMKDIGYGKEYRYAHNEPHAYAAGEKYFP 391
Query: 540 PSLEGYKF 547
L+ +F
Sbjct: 392 DELDPIQF 399
>gi|334366391|ref|ZP_08515323.1| recombination factor protein RarA [Alistipes sp. HGB5]
gi|313157357|gb|EFR56780.1| recombination factor protein RarA [Alistipes sp. HGB5]
Length = 424
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 201/438 (45%), Positives = 261/438 (59%), Gaps = 34/438 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP I+D +GQ+HL+ N + R + +PS I WGPPG GKTTLAK + +
Sbjct: 3 APLAERLRPKTIDDYIGQEHLVGKNGVFRKFFETGNVPSFILWGPPGVGKTTLAKIV--A 60
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAVTSGVKDVR+ +E A+K R K LF+DE+HRFNKSQQDS L +
Sbjct: 61 TQLERPFFTLSAVTSGVKDVREVIESAKKQRFFDAKPPFLFIDEIHRFNKSQQDSLLGAV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF +I+PLLSRC+V L P++ D++ LL RA+ +
Sbjct: 121 EQGTVTLIGATTENPSFEVISPLLSRCQVYILRPMEDKDLQTLLDRALTT-----DAELK 175
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
VEV F S GDAR LN L+I A G +
Sbjct: 176 AREVEVRQTGALFKFSG--GDARKLLNILDILA----------------------GATDG 211
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T + Q YD+ GE+HY++ISA KS+RG+D +AAIY+LARML GGE+P
Sbjct: 212 KLTITDQYVTDCLQQNIALYDKNGEQHYDVISAFIKSVRGSDPNAAIYYLARMLAGGEEP 271
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++ARRLV ASED+GLA+P AL A +C+ H +GMPE + LA+ YLA +PKS S
Sbjct: 272 RFLARRLVILASEDIGLANPNALLLANACFDTVHKIGMPEARITLAETTIYLATSPKSNS 331
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ A ++ N VPLHLRNAPTKLM + GYGKGY Y D A+Q FLP
Sbjct: 332 AYMAINKAMSLVEHDT-TNRPVPLHLRNAPTKLMDKAGYGKGYKYAHDFAGNFAEQEFLP 390
Query: 540 PSLEGYKFLDWPKSNTTD 557
+L G KF + N T+
Sbjct: 391 DTLAGTKFYEPNTGNATE 408
>gi|114320863|ref|YP_742546.1| recombination factor protein RarA [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227257|gb|ABI57056.1| Recombination protein MgsA [Alkalilimnicola ehrlichii MLHE-1]
Length = 461
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 196/437 (44%), Positives = 270/437 (61%), Gaps = 40/437 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++ +GQDH+L LR + + R S+I WGPPGTGKTTLA+ +
Sbjct: 35 PLADRMRPRTLDEFIGQDHILGEGRSLREGIRAGRPHSMILWGPPGTGKTTLARLVAE-- 92
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV +GVKD+R A+E+A ++R + RT+LFVDEVHRFNK+QQD+FLP +E
Sbjct: 93 AAEARFLTLSAVMAGVKDIRAAMEEATRVRA-AGGRTLLFVDEVHRFNKAQQDAFLPWVE 151
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L +E ++++A+ + G G
Sbjct: 152 DGTVIFIGATTENPSFELNNALLSRARVYVLRALDEVAIEGIVRQALAEPERGY-----G 206
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV + DA+ + DGDAR AL LEI+A A ESD
Sbjct: 207 GRVRLTDDALRLVVRAADGDARRALTTLEIAADLA----------------ESD------ 244
Query: 363 ALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
T+D+A +EA +D+ G+ Y ISALHKS+RG+D DA +YW RML+GG
Sbjct: 245 ---TVDEAAIREAVAGGTRRFDKGGDAFYEQISALHKSVRGSDPDATLYWFCRMLDGGCD 301
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYI RR++R ASED+G ADP AL A+ +A LG PE + LAQ V Y+A PKS
Sbjct: 302 PLYIGRRVIRMASEDIGNADPRALQMALDGVEAYERLGSPEGELALAQAVVYMASVPKSN 361
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + RE Q +P+HLRNAPT+LMKE+GYG+ Y Y D+P +A +++
Sbjct: 362 AVYAAFNAAMRDAREQGSQE--IPVHLRNAPTRLMKELGYGRAYRYAHDEPDAYAAGENY 419
Query: 538 LPPSLEGYKFLDWPKSN 554
P ++ ++ P+
Sbjct: 420 FPEAMGVRRYYRPPERG 436
>gi|345308137|ref|XP_001510043.2| PREDICTED: ATPase WRNIP1-like [Ornithorhynchus anatinus]
Length = 497
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 199/390 (51%), Positives = 250/390 (64%), Gaps = 25/390 (6%)
Query: 172 TTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
TTLA I N+ S +FV LSA ++ DVRD ++ A+ + ++T+LF+DE+HRFN
Sbjct: 115 TTLAHIIANNCKRNSTRFVTLSATSAKTNDVRDIIKQAQNEKRLFKRKTILFIDEIHRFN 174
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA-- 288
K+QQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L L +E++L RA
Sbjct: 175 KAQQDTFLPHVERGTVTLIGATTENPSFQVNAALLSRCRVIVLEKLSVEAMEVILLRALS 234
Query: 289 -----VDDVNNGLSKSVGGTRVE----VNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
V D + ++ GG E + A+ L CDGDAR LN L++ AI A
Sbjct: 235 SLDICVVDQGDPSDRADGGGGSEPTVFIEKRAVSTLAYLCDGDARAGLNGLQL-AIQA-- 291
Query: 340 RVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSM 399
R+ K + SP + +T D KE Q H+ YDRAGEEHYN ISALHKSM
Sbjct: 292 RLTPGATKPSD--------SPRI-FITESDVKEGLQRSHILYDRAGEEHYNCISALHKSM 342
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D +A++YWLARMLEGGE PLY+ARRLVRFASEDVGLADPLAL QAV+ YQ CHF+GM
Sbjct: 343 RGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDVGLADPLALPQAVAAYQGCHFIGM 402
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PEC V+LAQCV YLA APKSI +Y A + +R G VPLHLRNAPT+LMK++G
Sbjct: 403 PECEVLLAQCVVYLARAPKSIEVYGAYSNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLG 462
Query: 520 YGKGYIYTP-DDPSAKQSFLPPSLEGYKFL 548
YG+ Y Y P Q +LP L G F
Sbjct: 463 YGRDYKYNPMYKGPVDQDYLPEELRGMDFF 492
>gi|320333638|ref|YP_004170349.1| AAA ATPase [Deinococcus maricopensis DSM 21211]
gi|319754927|gb|ADV66684.1| AAA ATPase central domain protein [Deinococcus maricopensis DSM
21211]
Length = 438
Score = 367 bits (942), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 212/442 (47%), Positives = 276/442 (62%), Gaps = 50/442 (11%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
L P APL+ER+RP I +VVGQ HLL P L + S RL S+I WGPPG GKTTLA+
Sbjct: 3 LFEPPAPLAERLRPRTIEEVVGQRHLLGPGRPLTRTLASGRLGSLILWGPPGVGKTTLAR 62
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
+ AV F+ LSAV++GVKD+R+AV +A + R + + T+LF+DE+HRFNK+QQD+
Sbjct: 63 LLAR--AVDAHFIALSAVSAGVKDIREAVGEAERERGRGRR-TLLFLDEIHRFNKAQQDA 119
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
LP +E G + IGATTENPSF + L SR R L L L P D+ LL+RA+ D GL
Sbjct: 120 LLPHVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALTPEDIRGLLERALAD-ERGL 178
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
V +A++ L DGDAR AL+ LE+++ A D
Sbjct: 179 PG------VTAQPEALDLLARLADGDARRALSTLEVASTLA------------------D 214
Query: 357 GCSPYVALVTLDDAKEAFQCKHL-AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+P + EAF +HL A D+ GE+ YNLISALHKS+RG+ DA++YWLARM+
Sbjct: 215 PVTP-------EAITEAF-GRHLPAMDKNGEDFYNLISALHKSVRGSHVDASLYWLARMV 266
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGG Y+ARR+VR ASED+GLADP AL A++ A FLG PE ++ LAQ V YLAL
Sbjct: 267 EGGADTGYVARRVVRMASEDIGLADPQALRLAIAARDAVEFLGSPEGDLALAQAVVYLAL 326
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SA 533
APKS S+Y A G + +RE G+ VP+HLRNAPT LM++ GYGKGY Y DDP S
Sbjct: 327 APKSNSVYTAWGNVLRAVRE--GETLPVPVHLRNAPTALMRQQGYGKGYAYYFDDPEGSF 384
Query: 534 KQSFLP---------PSLEGYK 546
+Q++LP P+ EG++
Sbjct: 385 EQAYLPDGVHLHLYAPTGEGWE 406
>gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27]
gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27]
Length = 459
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 197/422 (46%), Positives = 261/422 (61%), Gaps = 33/422 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + + +GQ+HLL+ LR A+ ++ S++FWGPPG GKTTLA+ + S
Sbjct: 20 PLAARMRPRTLEEYLGQEHLLAVGMPLREALSRGKVDSMVFWGPPGVGKTTLARLLAQST 79
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ FV SAV+ GV VR+ V +A + R + T+LFVDE+HRFN++QQD+FLP +E
Sbjct: 80 EAA--FVSFSAVSDGVARVREIVAEAERRR-DGGRGTILFVDEIHRFNRAQQDAFLPHVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++V IGATTENPSF L LLSR RV+ L + +E L++RAV+D + GL G
Sbjct: 137 TGTVVLIGATTENPSFALTGALLSRVRVMVLEAIPVSTLEGLVQRAVEDRDRGL----GA 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ DA L + DGDAR L LE +A DG +
Sbjct: 193 RGLSIDDDARHLLAESSDGDARRLLGVLEAAASLV-----------------DDGGAIVR 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A V + A Q + YD++GEEHYNLISALHK++RG+D A+YWLARM++GGE P
Sbjct: 236 ATV-----EAAMQYRPPRYDKSGEEHYNLISALHKALRGSDPHGALYWLARMIQGGEDPR 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR A+ED+GLADP AL+ A++ Q LG PE + LAQ YLA APKS +
Sbjct: 291 YIARRMVRMATEDIGLADPQALSVAMTAAQTYERLGSPEGELALAQAAVYLATAPKSARV 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y A AA + ++ VP+HLRNAPTKLMKE+GYG GY Y P A QS+LP
Sbjct: 351 YEAWKAALEAAHDTPAAP--VPMHLRNAPTKLMKELGYGTGYQYAHSVPEAYLPQSYLPT 408
Query: 541 SL 542
L
Sbjct: 409 QL 410
>gi|344338099|ref|ZP_08769032.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
gi|343802153|gb|EGV20094.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
Length = 430
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/429 (47%), Positives = 275/429 (64%), Gaps = 34/429 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP + GQ HLL+P LR A+ S +L S+IFWGPPG+GKTTLA+ I S
Sbjct: 4 APLAERMRPATLEGFFGQQHLLAPGKPLREAIESGQLHSMIFWGPPGSGKTTLARLI--S 61
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ LSAV +GVKD+RDAV AR +R + T+LF+DEVHRFNK+QQD+FLP +
Sbjct: 62 RVSGAHFLSLSAVLAGVKDIRDAVATARTVRDLEQRPTLLFIDEVHRFNKAQQDAFLPHV 121
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG++ FIGATTENPSF L LLSR RV L+ L+ D+E +L RA+ D GL G
Sbjct: 122 EDGTLTFIGATTENPSFALNNALLSRARVYLLHALETEDIERVLARALSDPAQGL----G 177
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ DA L + DGDAR ALN LE++A R+ V E E+ E
Sbjct: 178 DLGLRLSGDAATLLARSADGDARRALNLLELAA-----RMTVGE--EIAPET-------- 222
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VA V + +D+ G+ Y+ ISALHKS+RG+D +AA+YWLARM++GG P
Sbjct: 223 VAEVIAGSVRR--------FDKGGDIFYDQISALHKSVRGSDPNAALYWLARMIDGGCDP 274
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR+VR ASED+G ADP AL+ A++ ++A LG PE + LAQ V YLA A KS +
Sbjct: 275 LYVARRIVRMASEDIGNADPRALDLALNAWEAQERLGSPEGELALAQAVVYLACAAKSNA 334
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A A R S + VP+HLRNAPTKL++ +G+G+ Y Y D+P +A +++L
Sbjct: 335 VYLAWNEALADARSSGSLD--VPIHLRNAPTKLLEALGHGRAYRYAHDEPEGYAAAETYL 392
Query: 539 PPSLEGYKF 547
P +L ++
Sbjct: 393 PDALARRRY 401
>gi|389580423|ref|ZP_10170450.1| AAA ATPase [Desulfobacter postgatei 2ac9]
gi|389402058|gb|EIM64280.1| AAA ATPase [Desulfobacter postgatei 2ac9]
Length = 442
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 203/430 (47%), Positives = 272/430 (63%), Gaps = 36/430 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP + DVVGQ+H+ S SLL AV +R+ S+I WGPPG GKT+LA I +
Sbjct: 16 APLAERMRPRRLEDVVGQEHITSNGSLLERAVFEDRVFSMILWGPPGCGKTSLANVI--A 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
++V +SAV SGV++VR +E A++ R N+RT+LFVDE+HRFNKSQQD+FL +
Sbjct: 74 AQTKNQWVKISAVLSGVREVRQIIEAAQERRRLHNRRTLLFVDEIHRFNKSQQDAFLFHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E+G I IGATTENPSF + L+SRCRV +LN L + +L RA+ D GL G
Sbjct: 134 ENGLITLIGATTENPSFEVNPALVSRCRVFSLNSLSQDAIVRILNRALIDKVKGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + +A+E + + DGDAR AL LE A+ + DG +
Sbjct: 190 LSSDIFSKEAVEHIAAASDGDARAALTNLEACAL-----------------NRRDGKT-- 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +DD + K L +D+AGEEH+NLISA KS+RG+D DAA+YWL RML G+ P
Sbjct: 231 ---LDVDDVRGVVAQKLLRHDKAGEEHFNLISAFIKSVRGSDPDAAMYWLERMLAAGDDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YI RR++R A+ED+GLADP AL A++ + LG PE + L Q YLA APKS +
Sbjct: 288 IYILRRMIRLATEDIGLADPGALTMAMNADASFRRLGRPEGDGSLYQAAVYLATAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
+Y AAQK ++E+V + VP+H+RNAPT LMK++GYG GY Y D A QS+
Sbjct: 348 VY----AAQKQVQEAVKKYGSLPVPMHIRNAPTGLMKQMGYGNGYKYAHDYTHGYASQSY 403
Query: 538 LPPSLEGYKF 547
LP SLEG +F
Sbjct: 404 LPESLEGRRF 413
>gi|320594099|gb|EFX06502.1| aaa family ATPase [Grosmannia clavigera kw1407]
Length = 645
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 200/449 (44%), Positives = 271/449 (60%), Gaps = 37/449 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++DV GQ+ L+ PN +LR+ + ++R+PS+I WG GTGKTT+A+ I
Sbjct: 200 APLAERMRPQDLDDVFGQE-LVGPNGVLRALIEADRVPSMILWGGSGTGKTTIARCIAQQ 258
Query: 182 VAVSYKFVCLSAVTSG-VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V +FV ++A SG + + + +DA + ++T+LF DE+HRF K+QQD FL
Sbjct: 259 VG--SRFVEMNATNSGGISECKKLFQDASNELALTGRKTILFCDEIHRFTKAQQDVFLKP 316
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV----------- 289
+E G+I IGATTENPSF ++T LLSRCR TL PL DV +L+RAV
Sbjct: 317 VEAGTITLIGATTENPSFRIVTALLSRCRTFTLAPLATEDVRCILERAVLQETGIPASDN 376
Query: 290 -------DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVP 342
D++ K ++ + + +L + DGDAR ALN LE++ AA
Sbjct: 377 NQGSPNETDISEETKKLTFALSPLIDRELLGYLAAFADGDARAALNLLELAMSIAA---- 432
Query: 343 VKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGN 402
+ E D + + L T +D K A K L YDRAG++HY+ ISA HKS+RG+
Sbjct: 433 --------RPREVDKNTGKITLCTKEDLKSAL-TKTLVYDRAGDQHYDTISAFHKSVRGS 483
Query: 403 DADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462
D DA +Y+LARML+ GE PL+IARR+V ASEDVGLAD L+ A S Y A +GMPE
Sbjct: 484 DPDATLYYLARMLQSGEDPLFIARRMVVIASEDVGLADSTLLSLATSAYTATQQIGMPEA 543
Query: 463 NVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGK 522
+ LA C LALAPKS YR L A +RE + +P+HLRNAPT+LMK++GYGK
Sbjct: 544 RIPLAHCAVALALAPKSTRAYRGLNNAYAALREPGVASLPIPVHLRNAPTRLMKDMGYGK 603
Query: 523 GYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
Y Y P+ D KQ +LP L FL+
Sbjct: 604 EYKYNPNYLDGRVKQDYLPDQLLDRTFLE 632
>gi|339010661|ref|ZP_08643231.1| hypothetical protein BRLA_c44980 [Brevibacillus laterosporus LMG
15441]
gi|421875411|ref|ZP_16307003.1| ATPase associated with various cellular activities family protein
[Brevibacillus laterosporus GI-9]
gi|338772816|gb|EGP32349.1| hypothetical protein BRLA_c44980 [Brevibacillus laterosporus LMG
15441]
gi|372455619|emb|CCF16552.1| ATPase associated with various cellular activities family protein
[Brevibacillus laterosporus GI-9]
Length = 438
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 273/423 (64%), Gaps = 28/423 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++VVGQ H+L+ SLLR A+ ++++ S+IF+GPPGTGKTTLAK I +
Sbjct: 19 PLAARMRPKNLDEVVGQQHILAKGSLLRRAIEADQISSLIFYGPPGTGKTTLAKVIARTT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F L+AVT+GV D+R VE+A+ V +N+RT LF+DE+HRFNKSQQD+ LP +E
Sbjct: 79 --KSHFSELNAVTAGVADIRRIVEEAKDRLVMNNQRTTLFIDEIHRFNKSQQDALLPYVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+++ IGATTENP F + LLSR ++ +L L D+ ++ RA+ D GL G
Sbjct: 137 EGTVILIGATTENPFFEVNAALLSRSQIFSLQSLTDEDLGQVIDRALTDELEGL----GE 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV++ +A E L +GDAR LNALE++A T P+ E E+
Sbjct: 193 LRVKMTPEAKEHLMHYAEGDARRLLNALELAATT----TPLNEAGEI------------- 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++TLD A E+ Q + + YD++G+ HY+ +SA KS+RG+D D A+YWLARM++ GE P
Sbjct: 236 -VITLDVAVESIQRRAVRYDKSGDNHYDTVSAFIKSIRGSDPDGALYWLARMIDAGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRL+ ASED+G ADP AL+ AVSC+QA +GMPE + L Q YLA APKS +
Sbjct: 295 FIARRLIISASEDIGNADPQALSVAVSCFQALELIGMPEGRIALGQATTYLATAPKSNAA 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y +G Q ++ ++ VP+HLR+ K +G+G+GY+Y + P KQ +LP
Sbjct: 355 Y--MGINQALMHVQKEGHKPVPVHLRDRHYKGAARLGHGEGYLYPHNYPEGYVKQRYLPE 412
Query: 541 SLE 543
+E
Sbjct: 413 GVE 415
>gi|28804790|dbj|BAC57944.1| Werner helicase interacting protein [Gallus gallus]
Length = 354
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 188/351 (53%), Positives = 233/351 (66%), Gaps = 27/351 (7%)
Query: 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNP 275
++T+LF+DE+HRFNKSQQD+FLP +E G++ IGATTENPSF + LLSRCRV+ L
Sbjct: 8 KRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAALLSRCRVIVLEK 67
Query: 276 LKPHDVEILLKRAVDDVN-------NGLSKSVGGTRVE-------VNHDAIEFLCSNCDG 321
L +E +L RAV + N S SV G+ E + A+ L CDG
Sbjct: 68 LSVEAMEAILLRAVKSLGVQVLGQGNQHSSSVTGSSKESSELPVYIEEKALSTLAYLCDG 127
Query: 322 DARVALNALEIS--AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHL 379
DAR LN L+++ A AA + + E GCS L+T + KE Q H+
Sbjct: 128 DARTGLNGLQLAVQARLAAGKTTLLSFTE--------GCSVSGVLITEEHVKEGLQRSHI 179
Query: 380 AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLA 439
YDRAGEEHYN ISALHKSMRG+D +A++YWLARMLEGGE+ LY+ARRLVRFASED+GLA
Sbjct: 180 LYDRAGEEHYNCISALHKSMRGSDENASLYWLARMLEGGERSLYVARRLVRFASEDIGLA 239
Query: 440 DPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQ 499
DPLAL QAV+ YQ CHF+GMPEC VILAQCV Y A APKSI +YRA G ++ +R G
Sbjct: 240 DPLALTQAVAAYQGCHFIGMPECEVILAQCVVYFARAPKSIEVYRAYGNVKECLRMHTGP 299
Query: 500 NEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFL 548
VPLHLRNAPT+LMK++GYGKGY Y P +P +Q +LP L+G F
Sbjct: 300 LPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYKEP-VEQDYLPEELKGTDFF 349
>gi|329965400|ref|ZP_08302324.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
gi|328522192|gb|EGF49306.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
Length = 423
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 201/443 (45%), Positives = 269/443 (60%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 DTP--FYTLSAVTSGVKDVRDVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D++ LL+RA+
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLQELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T + + IE + GDAR LN LE+ ES+
Sbjct: 169 TDIVLKERKIELEETTAMLRYSGGDARKLLNILELVV-------------------ESEI 209
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
P V +T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 210 SDPVV--ITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISASEDIGLANPNALLLANACFDTIMKVGWPEGRIPLAEATIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y D P KQ
Sbjct: 328 KSNSAYMAINHALELVRET--GNLPVPLHLRNAPTKLMKQLGYGEKYKYAHDYPGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP L+ ++ + P++N ++
Sbjct: 386 QFLPDELKNHRLWE-PQANAAEQ 407
>gi|406970915|gb|EKD95140.1| hypothetical protein ACD_25C00054G0003 [uncultured bacterium]
Length = 409
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 202/446 (45%), Positives = 274/446 (61%), Gaps = 60/446 (13%)
Query: 123 PLSERMRPVNINDVVGQDHLLSP----NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
PL++++RP N+N++ G + LL + LL++ + + PS+IFWGPPG GKTTLA+ I
Sbjct: 3 PLADKIRPKNLNEMSGHEKLLGDGGIISELLKNTLATGFFPSLIFWGPPGVGKTTLARII 62
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR--------VKSNKRT---VLFVDEVH 227
+ + +F SAV + VK + +ED K S KR V+F+DE+H
Sbjct: 63 ASET--NRRFYEFSAVNTSVKTIEKELEDNGKTASPNLWTQDTSSKKRVGAPVVFIDEIH 120
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
RFNK+QQD+ LP++E G I+F+GATTENPSF +I PLLSRCRV+ + L D++ ++ R
Sbjct: 121 RFNKAQQDALLPLVEQGKIIFMGATTENPSFEVIAPLLSRCRVVIMGQLSEVDLDKIVDR 180
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347
A++D+ G R+E DA +FL +GDAR +N LEI+ +++ K
Sbjct: 181 ALEDI---------GKRLE--KDARKFLVQCSNGDARTCINILEIA-------FHLQKGK 222
Query: 348 EVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAA 407
E+ T DD K A Q L +D GEE YN ISALHKS+RG+D DAA
Sbjct: 223 EI----------------TFDDIKTALQKSQLTFDLQGEEFYNTISALHKSIRGSDPDAA 266
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YWLARMLE G+ P+YIARRL+R ASED+GL DP AL AV+ +QAC +GMPECN+ LA
Sbjct: 267 LYWLARMLEAGQDPIYIARRLIRLASEDIGLKDPQALVIAVAAFQACERIGMPECNLALA 326
Query: 468 QCVAYLALAPKSISIYRALG-AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY 526
+ V Y A +PKS +Y A G AA ++ N VPLH+RNAPTKLMK+IGYGK Y Y
Sbjct: 327 EVVVYFAKSPKSNELYIAYGKAADDAVKYG---NLPVPLHIRNAPTKLMKDIGYGKNYNY 383
Query: 527 TPDDPSAKQ----SFLPPSLEGYKFL 548
P K+ + P L+G K+L
Sbjct: 384 Y-HSPEGKKLPDIEYFPDKLKGTKYL 408
>gi|194336934|ref|YP_002018728.1| recombination factor protein RarA [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309411|gb|ACF44111.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 447
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 199/424 (46%), Positives = 274/424 (64%), Gaps = 35/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D+ GQ+HL+ N LR + ++PS+IFWGPPG+GKTTLA+ + +
Sbjct: 26 PLAERVRPHTLDDMAGQEHLVGANGPLRKFLSGGQMPSMIFWGPPGSGKTTLAE--ICAT 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+++Y F LSA+ SGVK+VR A+E A K R +S +RT+LF+DE+HRFNK+QQD+ L IE
Sbjct: 84 SLNYSFEQLSAIDSGVKEVRKALEQAEKSR-RSGRRTILFIDEIHRFNKAQQDTLLHAIE 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF + LLSR +V L PL ++E++++RA+ + + +
Sbjct: 143 QGLIVLIGATTENPSFEVNGALLSRMQVYILKPLGSEEIELVIRRALKE-----DRLLRD 197
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ ++FL GDAR ALNA+E AA+ + +G S V
Sbjct: 198 LSIEITD--LDFLLQFSGGDARKALNAVE-----AAISL------------FPEGASEMV 238
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + + A Q K YD+ GE HY++ISA KSMRG+D DAA++WLARM+EGGE P
Sbjct: 239 --LTRELLERALQYKAPIYDKGGENHYDIISAFIKSMRGSDPDAALFWLARMIEGGEDPK 296
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V FASED+G ADP A+ A++ +QA +GMPE + LAQ V YLA APKS +
Sbjct: 297 FIARRMVIFASEDIGNADPYAITLAIAVFQAVAMIGMPEARINLAQGVTYLASAPKSNAS 356
Query: 483 YRALGAAQKVIRES-VGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQSFLP 539
Y+ + A +RE+ V Q+ VPLHLRNAPTKLMK GYG GY Y P Q + P
Sbjct: 357 YQGINEA---MREAKVMQDLAVPLHLRNAPTKLMKNEGYGAGYKYPHSYPFHFVSQHYFP 413
Query: 540 PSLE 543
+E
Sbjct: 414 EGME 417
>gi|385331558|ref|YP_005885509.1| recombination factor protein RarA [Marinobacter adhaerens HP15]
gi|311694708|gb|ADP97581.1| recombination factor protein RarA [Marinobacter adhaerens HP15]
Length = 445
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 201/441 (45%), Positives = 272/441 (61%), Gaps = 31/441 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS A PL+ RMRP ++ND VGQ HL+ P LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFAESAGFRPLAARMRPASLNDYVGQAHLVGPGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N +S++ V SAV SGVK++R VE AR + + T+LFVDEVHRFNK
Sbjct: 63 TTFAQLLANVGDLSFETV--SAVLSGVKEIRAVVERARNRKQSQGRDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D+ LL+RA+
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEEEDILQLLRRALT- 179
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
V+ G G R+ V+ D + + + GDAR ALN LE++A ++ +
Sbjct: 180 VDEGF-----GGRLRVDEDVLTLMAAASGGDARRALNILEVAA-------------DLAE 221
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
DE+ VT D ++ Q +D+ G+ Y+ ISALHKS+RG+D D ++YWL
Sbjct: 222 PDEAG-----TDRVTADQLEQVMQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG PLY+ARRLVR ASED+G AD AL ++ + A LG PE + LAQ V
Sbjct: 277 CRMLDGGCDPLYVARRLVRIASEDIGNADTRALQLSMEAWDAQERLGSPEGELALAQAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLA+APKS ++Y A IR+ + VP+HLRNAPTKLMK +G+G Y Y D+P
Sbjct: 337 YLAMAPKSNAVYNAFNKCMADIRQD--PDYEVPVHLRNAPTKLMKSMGHGDTYRYAHDEP 394
Query: 532 ---SAKQSFLPPSLEGYKFLD 549
+A +S+LP ++ ++ +
Sbjct: 395 EAFAAGESYLPEAIHQRRYYE 415
>gi|311748366|ref|ZP_07722151.1| ATPase, AAA family [Algoriphagus sp. PR1]
gi|126576875|gb|EAZ81123.1| ATPase, AAA family [Algoriphagus sp. PR1]
Length = 420
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 198/429 (46%), Positives = 261/429 (60%), Gaps = 39/429 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRPV + D++GQ+HL SPNS L A+ S +PS+I WGPPG GKTT+A I N +
Sbjct: 5 PLAERMRPVRLEDLIGQEHLSSPNSFLFKAIKSGNVPSLILWGPPGVGKTTIANIIANEI 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA++SGVKD+R+ +E A K VLF+DE+HRFNKSQQD+ L +E
Sbjct: 65 KAP--FYTLSAISSGVKDIREVIEKA-----KFQMGVVLFIDEIHRFNKSQQDALLGAVE 117
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF + LLSRC+V TLN L ++E ++ +A L K V
Sbjct: 118 KGIIRLIGATTENPSFEVNAALLSRCQVFTLNSLGKPELEAMVHQA-------LEKDVDL 170
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V + L GD R LN LEI DG +
Sbjct: 171 KKLNVELKETDALLRISGGDGRKLLNLLEIVI---------------------DGINEDP 209
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + + Q K YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 210 CIITDEKVMQIAQQKVALYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGEDVK 269
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+G A+P AL A +C+ A +G PE +IL+QCV YLA +PKS +
Sbjct: 270 FIARRLVILASEDIGNANPNALLLATNCFDAVKLIGYPESRIILSQCVTYLASSPKSNAS 329
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ AQ ++RE + VPLHLRNAPTKLMK++ YGK Y Y+ D P Q FLP
Sbjct: 330 YMAINQAQALVREK--GDLSVPLHLRNAPTKLMKDLNYGKAYKYSHDFPGNFVAQEFLPD 387
Query: 541 SLEGYKFLD 549
++G K D
Sbjct: 388 EIKGMKLYD 396
>gi|312384050|gb|EFR28872.1| hypothetical protein AND_02653 [Anopheles darlingi]
Length = 580
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 198/469 (42%), Positives = 280/469 (59%), Gaps = 45/469 (9%)
Query: 98 PSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR 157
PSP + KT DS + PL+ER+RP NI D VGQ+ ++ N++LR S
Sbjct: 139 PSPHTEVAKTSWPADS-------NKPLAERVRPDNIEDYVGQEQVMGRNAILRKLFDSGS 191
Query: 158 LPSIIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK 214
+PS+I WGPPG GKTTLA I N + S +FV LSA ++GV DV++AV+ A+ +
Sbjct: 192 IPSMILWGPPGCGKTTLAHIIANRCKQNSNSMRFVSLSATSAGVNDVKEAVKVAKN-ESR 250
Query: 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLN 274
+RT+LF+DE+HRFNK QQD FLP +E G+I IGATTENPSF L + LLSRCRV+ L
Sbjct: 251 FKRRTILFLDEIHRFNKLQQDIFLPHVESGTITLIGATTENPSFSLNSALLSRCRVIVL- 309
Query: 275 PLKPHDVEILLK-----------RAVDDVNNGLSKSVGGTRVE----VNHDAIEFLCSNC 319
+ H VE ++ + + D +N + G + +E ++ + + +L C
Sbjct: 310 --EKHSVESMMSILVRALPQYRAKLITDCDNNNIPNYGKSPLEPSLLISEETVRWLAETC 367
Query: 320 DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHL 379
DGDAR+ LN+L+++ +V VP + D P + ++L+D +E + HL
Sbjct: 368 DGDARIGLNSLQLAL---SVNVPTSQ----------DAAPPKI--ISLEDVREGLKKSHL 412
Query: 380 AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLA 439
YDR G++HY+LISALHKS+R +D +AA+YW+ RM+ GE P Y+ RR++R ASED+G+A
Sbjct: 413 LYDRKGDQHYDLISALHKSIRASDDNAALYWVTRMIMSGEDPRYVCRRMIRMASEDIGMA 472
Query: 440 DPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQ 499
D AL A + A +G PE + I+A C YLA APKS +Y A + I G
Sbjct: 473 DTNALQVATATLTAVQTVGWPEADCIIAHCAVYLARAPKSREVYEAFKECRASIENWKGP 532
Query: 500 NEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPPSLEGYKFL 548
VPLHLRNAPTKLMK++ YG GY D S +++P LE ++
Sbjct: 533 MPPVPLHLRNAPTKLMKQLNYGNGYNLMHKDESG-LTYMPEGLEDLRYF 580
>gi|406929701|gb|EKD65222.1| hypothetical protein ACD_50C00153G0019 [uncultured bacterium]
Length = 400
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 193/427 (45%), Positives = 273/427 (63%), Gaps = 35/427 (8%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183
L+ R+RP N+++ VGQ+HL+ +L+ + ++ S+IFWGPPG+GKTTLA+ I S +
Sbjct: 3 LAFRLRPQNLDEFVGQEHLVGKGKILQRMMEQKQVSSMIFWGPPGSGKTTLAQII--SKS 60
Query: 184 VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED 243
F LSAV +G D+R + AR+ + K+NK+T+LF+DE+HR+NKSQQD+ LP +E
Sbjct: 61 TESDFYSLSAVQTGKDDLRKIINSARENQ-KNNKKTILFIDEIHRWNKSQQDALLPQVES 119
Query: 244 GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGT 303
G I IGATTENPSF +I+PLLSRCRV L L ++E ++ +++ D G VG
Sbjct: 120 GLITLIGATTENPSFEVISPLLSRCRVFVLKSLSYENLEKIIDKSLSDKQKG----VGKY 175
Query: 304 RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363
R +++ D+ E L GDAR+ LNALEI+ V KE +
Sbjct: 176 RKKIDKDSKELLVRLSGGDARIMLNALEIA---------VTNFKEKQ------------- 213
Query: 364 LVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + +E FQ + YD+ +EHYN+ISA KSMRG+D DAA+Y++ARMLE GE P
Sbjct: 214 -ITQEIIREVFQTRSAGLYDKKADEHYNIISAFIKSMRGSDPDAALYYMARMLENGEDPK 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++ FASED+GLAD AL QA + ++A H +GMPE +ILA YL+ A KS ++
Sbjct: 273 FIARRMIIFASEDIGLADRGALIQANAGFEAVHKIGMPEAQLILAHICLYLSTAKKSRAV 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
AL A++ + E NE +PLH+RNAPTKLMK++GY K Y ++ P++ FLP
Sbjct: 333 VNALSEAKQAVYEF--PNEPIPLHIRNAPTKLMKDLGYAKNYTWSNSYVGPTSNLPFLPI 390
Query: 541 SLEGYKF 547
L+G KF
Sbjct: 391 KLKGKKF 397
>gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438115|ref|ZP_08617756.1| hypothetical protein HMPREF0990_00150 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848765|gb|EDK25683.1| ATPase, AAA family [Ruminococcus torques ATCC 27756]
gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336015159|gb|EGN44983.1| hypothetical protein HMPREF0990_00150 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 438
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 271/430 (63%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP +++VVGQ H++ + LL A+ +++L S+IF+GPPGTGKTTLAK I N+
Sbjct: 16 SPLASRMRPKTLDEVVGQQHIIGKDKLLYRAIKADKLSSVIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +K ++A +G KD+ + V++A+ ++ KRT+LF+DE+HRFNK QQD LP +
Sbjct: 76 TSAEFK--QINATVAGKKDMEEVVKEAKDMQGMYGKRTILFIDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + LLSR V L PL+ D++ILL+RAV+D GL G
Sbjct: 134 EDGTVILIGATTENPYFEVNGALLSRSAVFELKPLEKEDIKILLRRAVEDEEKGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ +A+EFL GDAR ALNA+E+ +T E DG
Sbjct: 190 SFGAKIEEEALEFLADMSGGDARSALNAIELGVLTT--------------ERSEDG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TL+ A E Q + + YD+ G+ HY++ISA KSMRG+D DAA+++LA+ML GE
Sbjct: 232 IIHITLETASECIQKRVVNYDKKGDNHYDIISAFIKSMRGSDPDAAVFYLAKMLYAGEDV 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ A+EDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICAAEDVGNADPMALTVAVSAAQAVERIGMPESQIILSQAVTYVACAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA + +R VP HLR+A K K++G+G Y Y D P KQ +LP
Sbjct: 352 AVNAIFAANEAVR---NYQTSVPAHLRDAHYKGAKKLGHGTDYKYAHDYPDHYVKQQYLP 408
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 409 DEIKNARFYE 418
>gi|328351596|emb|CCA37995.1| Uncharacterized AAA domain-containing protein C26H5.02c
[Komagataella pastoris CBS 7435]
Length = 863
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 266/430 (61%), Gaps = 20/430 (4%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP + + VGQ HL+ P +LR + +R+PS+I WGPPG GKT+LA+ I S
Sbjct: 433 PLAERLRPKTLEEYVGQSHLVGPTGVLRGFIEHDRVPSMILWGPPGVGKTSLARIIAAST 492
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ V LSA +SG+ + R E+AR + +RTVLF DE+HRFNKSQQD+FLP +E
Sbjct: 493 --HNRCVELSATSSGISECRKVFEEARNEMRLTKRRTVLFCDEIHRFNKSQQDAFLPYVE 550
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF L + LLSRCRV LN L D+ ++ R++ VN
Sbjct: 551 RGDIILIGATTENPSFQLNSALLSRCRVFVLNKLDNEDLAKVVNRSLLLVNRVRKLVYNM 610
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++++++ GD+R ALN +E+ ++ D++ S V
Sbjct: 611 PVLRLTTESLQYIIGVAGGDSRTALNLVEMVD------------SHYQKNDDTTAASVEV 658
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL +E + H YDR G++HY+ ISA HKS+RG++ DA +Y+LARML GGE PL
Sbjct: 659 DPSTL---REVLRSTHAVYDRVGDQHYDAISAFHKSVRGSNVDATLYYLARMLHGGEDPL 715
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YI+RR++R ASED+G+ D L AV+ + A H +G+PE +V+LA C LA A KS+SI
Sbjct: 716 YISRRMIRMASEDIGVVDDSCLPFAVATFDAVHKVGLPEADVMLAHCAYKLATAAKSVSI 775
Query: 483 YRALGAAQ-KVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLP 539
YRA + KV +++ +P+HLRNAPTKLM+E+GY KGY Y PD K Q +LP
Sbjct: 776 YRAWNKVKAKVAQDANFAGAPIPMHLRNAPTKLMEELGYSKGYKYNPDFKEGKVVQEYLP 835
Query: 540 PSLEGYKFLD 549
++ F +
Sbjct: 836 SEIKDETFYE 845
>gi|442322866|ref|YP_007362887.1| recombination factor protein RarA [Myxococcus stipitatus DSM 14675]
gi|441490508|gb|AGC47203.1| recombination factor protein RarA [Myxococcus stipitatus DSM 14675]
Length = 443
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 205/438 (46%), Positives = 271/438 (61%), Gaps = 52/438 (11%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++ +GQ+HL + LR A+ ++++PS+I WGPPGTGKTTLA + S
Sbjct: 16 APLAERMRPRTLDEFMGQEHLTAEGRFLRRALENDQVPSLILWGPPGTGKTTLAGLVARS 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F +SAV +GVKD+R+ V A++ +RT LF+DE+HRFNK+QQD+ LP +
Sbjct: 76 TGAA--FDSVSAVLAGVKDIRETVARAQERWNLHRQRTFLFIDEIHRFNKAQQDALLPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + LLSRCRV+TL L+ ++ LL+RAV D GL
Sbjct: 134 EKGTVTLIGATTENPSFEVNAALLSRCRVVTLRGLEEEELVSLLRRAVAD-ERGLH---- 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+VEV A++FL ++ GDAR AL LE++A +V K
Sbjct: 189 -GKVEVEDAALDFLAASAGGDARKALTGLEVAAAHGGAKVDRKA---------------- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A+EA Q K L YD+ GEEHYN+ISA KSMRG+D D A+YW+ARMLE GE P
Sbjct: 232 --------AEEALQQKTLLYDKGGEEHYNVISAFIKSMRGSDVDGALYWMARMLEAGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+++ RR+V FASED+G ADP AL+ AV +A +G+PE + L Q V YLALAPKS +
Sbjct: 284 IFLFRRMVIFASEDIGNADPRALSVAVDALRAFQLVGLPEGTLPLTQAVTYLALAPKSNA 343
Query: 482 IYRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYI--------YTPDD 530
+ A AA+ + EG VPLHLRNAPTKLMK +GYG GY Y P+D
Sbjct: 344 VLTAYTAARAAV-----TKEGALPVPLHLRNAPTKLMKSLGYGGGYKYPHNFEGHYVPED 398
Query: 531 --PSA--KQSFLPPSLEG 544
P A +SF PS G
Sbjct: 399 YLPEALRARSFYSPSQNG 416
>gi|291515550|emb|CBK64760.1| Recombination protein MgsA [Alistipes shahii WAL 8301]
Length = 425
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 203/443 (45%), Positives = 266/443 (60%), Gaps = 38/443 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+P+ PL+ER+RP I++ +GQ+HL+ N + R + +PS I WGPPG GKTTLAK +
Sbjct: 1 MPNIPLAERLRPRTIDEYIGQEHLVGKNGVFRKFFETGNVPSFILWGPPGVGKTTLAKIV 60
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+ + F LSAVTSGVKDVR+ +E ARK R K +LF+DE+HRFNKSQQDS L
Sbjct: 61 --ATQLERPFFTLSAVTSGVKDVREVIESARKQRFFDQKAPLLFIDEIHRFNKSQQDSLL 118
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E G IGATTENPSF +I+PLLSRC+V L L+ D++ LL RA+
Sbjct: 119 GAVEQGVFTLIGATTENPSFEVISPLLSRCQVYILKSLEDKDLQTLLDRALTT-----DT 173
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI--SAITAAVRVPVKEVKEVEQEDESD 356
+ +EV F S GDAR LN LEI A V + + V + Q++
Sbjct: 174 ELKERDIEVTETGALFRFSG--GDARKLLNILEIVVGATDGKVTITDRYVTDCLQQN--- 228
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
+AL YD+ GE+HY++ISA KS+RG+D +AAIY+LARML
Sbjct: 229 -----IAL----------------YDKNGEQHYDVISAFIKSVRGSDPNAAIYYLARMLA 267
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GGE+P ++ARRLV ASED+GLA+P AL A +C+ H +GMPE + LA+ YLA +
Sbjct: 268 GGEEPRFLARRLVILASEDIGLANPNALLLANACFDTVHKIGMPEARITLAETTIYLATS 327
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AK 534
PKS S Y A+ A ++ E N VPLHLRNAPT+LM + GYGKGY Y D A+
Sbjct: 328 PKSNSAYMAINKAMSLV-ERDTTNRPVPLHLRNAPTRLMDKAGYGKGYKYAHDYAGHFAE 386
Query: 535 QSFLPPSLEGYKFLDWPKSNTTD 557
Q FLP SL G KF + N +
Sbjct: 387 QEFLPESLSGTKFYEPDTQNAAE 409
>gi|220935170|ref|YP_002514069.1| recombination factor protein RarA [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996480|gb|ACL73082.1| recombination factor protein RarA [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 447
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 202/423 (47%), Positives = 262/423 (61%), Gaps = 30/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP N+++ GQ HLL+P LR A+ +RL S++FWGPPGTGKTTLA+ I +
Sbjct: 17 PLADRMRPRNLDEYAGQSHLLAPGKPLRRAIEEDRLHSMLFWGPPGTGKTTLARMIAHYC 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ LSAV SGVKD+R AVE AR+ R K TVLFVDEVHRFNKSQQD+FLP +E
Sbjct: 77 GA--QFLTLSAVLSGVKDIRAAVEQAREYRRMHGKPTVLFVDEVHRFNKSQQDAFLPHVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I F+GATTENPSF L LLSR R L L D+ ++ RA+ D GL GG
Sbjct: 135 DGTIAFVGATTENPSFELNNALLSRVRTYVLKALTDGDIRAIIDRALADEERGL----GG 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + L DGDAR ALN LEI+A A E+ E
Sbjct: 191 RHLHMADELRDRLARAADGDARRALNLLEIAADLAQEGPQGAEITE-------------- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TLD+ + +D+ GE Y+ ISALHKS+RG++ DAA+YWL RM++GG +
Sbjct: 237 --ATLDEVTSQGLRR---FDKGGELFYDQISALHKSVRGSNPDAALYWLCRMIDGGCDLV 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y++RR+VR ASED+G ADP L A+ + LG PE + LAQ V YLA APKS ++
Sbjct: 292 YLSRRIVRMASEDIGNADPRGLTLALEAWDVYERLGSPEGELALAQAVVYLACAPKSNAV 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A +RE+ G E VP+HLRNAPTKLMK + YGKGY Y D+ +A + + P
Sbjct: 352 YMAYNQAMAEVRET-GTLE-VPMHLRNAPTKLMKSLDYGKGYRYAHDEQDGYAAGERYFP 409
Query: 540 PSL 542
+
Sbjct: 410 DEM 412
>gi|397671137|ref|YP_006512672.1| recombination factor protein RarA [Propionibacterium propionicum
F0230a]
gi|395142306|gb|AFN46413.1| recombination factor protein RarA [Propionibacterium propionicum
F0230a]
Length = 470
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 200/434 (46%), Positives = 266/434 (61%), Gaps = 31/434 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D + A+H P PL +R+RP ++DVVGQD LL+P++ L V S RL SII WGPPG GK
Sbjct: 30 DGSGAVHDPGRPLPDRLRPRALDDVVGQDQLLAPDAPLGRMVASGRLSSIILWGPPGCGK 89
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + + ++ V SA SGV D+R A R + + T+LFVDE+HRFN+
Sbjct: 90 TTIARLLADRTGLLFEQV--SATFSGVADLRKVFATATHRR-EIGQGTLLFVDEIHRFNR 146
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +EDG++V +GATTENPSF L LLSRC+V+ L L + LL RA
Sbjct: 147 AQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVMVLRRLDEAALGELLARA--- 203
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+S+ G + + +A L + DGD R L +E I AA
Sbjct: 204 ------ESLTGRSLSLTEEARTVLLAMADGDGRYLLGMVE--QILAA------------- 242
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
+D + ++ + + YD++ EEHYNLISALHKSMRG+D DAA+YWL
Sbjct: 243 QDAGGCLPGGPGPLGVEGLRAVVASRVPLYDKSREEHYNLISALHKSMRGSDPDAALYWL 302
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARML GGE PLY+ARRLVRFASEDVG+ADP AL ++ + A LG PE + +AQ V
Sbjct: 303 ARMLGGGEDPLYVARRLVRFASEDVGMADPAALQMTLAAWDAYERLGSPEGELAIAQAVV 362
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-- 529
YLA APKSI++YR G A ++ RE+ P H+ NAPT+LMKE+GYG+GY Y PD
Sbjct: 363 YLATAPKSIAVYRGYGRAARLARETGSLMP--PAHILNAPTRLMKELGYGEGYEYDPDTA 420
Query: 530 DPSAKQSFLPPSLE 543
D + +LP +E
Sbjct: 421 DGFSGADYLPDGVE 434
>gi|443728263|gb|ELU14678.1| hypothetical protein CAPTEDRAFT_227011 [Capitella teleta]
Length = 494
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 203/470 (43%), Positives = 280/470 (59%), Gaps = 44/470 (9%)
Query: 96 IEPSPLFKRLKTRHD---------------VDSTTALHVPHAPLSERMRPVNINDVVGQD 140
+EPSP KR K +D S+T P P++E++RP ++ GQ+
Sbjct: 40 VEPSPSKKR-KISNDENQNFENILNEKPVKAQSSTFKVKPGIPIAEQLRPTCFSEYSGQE 98
Query: 141 HLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS--YKFVCLSAVTSGV 198
+L N LR + ++PS+I WGPPG GKTTLA+ I S +F LSA T+GV
Sbjct: 99 KVLGENQALRKLLEKQQIPSMILWGPPGCGKTTLARIIAGKCQKSQMMRFSQLSATTAGV 158
Query: 199 KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSF 258
DV++ V+ A+K +RT+LF+DE+HRFNK QQD+ LP IEDG+ V IGATTENPSF
Sbjct: 159 ADVKEVVKIAKKELRMLKRRTILFIDEIHRFNKLQQDALLPHIEDGTFVLIGATTENPSF 218
Query: 259 HLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL---SKSVGGTRVEVNHDAIEFL 315
+ +LSRC+++ L L ++ +++R + ++ + S + R+ + +A+ L
Sbjct: 219 RVNNAVLSRCKLIVLEALSAQNILEIIRRCLVKLDIRVVDSSDTDHQGRLSIEGEAVSLL 278
Query: 316 CSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375
+GDAR +LN L+ A+ V +E K L+T+DD + + Q
Sbjct: 279 SKCSEGDARRSLNTLQ-----TAIEVSNQESKR---------------LITVDDIRASLQ 318
Query: 376 CKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASED 435
HL YDRAG+EHY+ SAL KS+RG+ AIYWLARM EGGE PL+IARRL+ ASED
Sbjct: 319 RSHLRYDRAGDEHYDCASALQKSIRGSSDSGAIYWLARMFEGGEDPLFIARRLLVCASED 378
Query: 436 VGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRE 495
+GLADP AL AV+ +QAC FLG PEC L+ C YLA APKS A A++ I +
Sbjct: 379 IGLADPNALGIAVATFQACQFLGFPECKFNLSHCATYLARAPKSAECTVAYQRAKQSILK 438
Query: 496 SVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSFLPPSLE 543
G GVPLHLRNAPT++MK++GYGKGY Y +P +Q +LP +E
Sbjct: 439 HEGPLPGVPLHLRNAPTQMMKDLGYGKGYKYNYAYSEP-VEQEYLPEGME 487
>gi|332292456|ref|YP_004431065.1| AAA ATPase central domain-containing protein [Krokinobacter sp.
4H-3-7-5]
gi|332170542|gb|AEE19797.1| AAA ATPase central domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 425
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 200/441 (45%), Positives = 275/441 (62%), Gaps = 36/441 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP + D + Q HL+ PN L+ A+ + +PS+I WGPPG GKTTLA I
Sbjct: 2 NTPLAERLRPKKLEDYLSQQHLVGPNGSLQQALKAGIIPSLILWGPPGIGKTTLATII-- 59
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
S + F LSA+ SGVKD+RD ++ A++ + + K +LF+DE+HRF+KSQQDS L
Sbjct: 60 SEESNRPFYTLSAINSGVKDIRDVIDKAKQSGGLFTQKNPILFIDEIHRFSKSQQDSLLG 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF +I LLSRC+V L P D+E+LL RA+ + + K
Sbjct: 120 AVERGWVTLIGATTENPSFEVIPALLSRCQVYILKPFDKKDLELLLNRAITEDSILKKKD 179
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ E A+ FL GDAR LN E+ T P KEV
Sbjct: 180 ITLKETE----ALLFLSG---GDARKLLNIFELIVTTE----PQKEV------------- 215
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+VT D + Q + YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 216 ----IVTNDMVRSKVQQNIVRYDKTGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARRL+ ASED+G A+P AL A +C+QA +G PE +IL+QCV YLA +PKS
Sbjct: 272 DVKFIARRLIIAASEDIGNANPTALVIANNCFQAVTTIGYPEARIILSQCVTYLATSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSF 537
+ Y A+G AQ++++++ + VPL LRNAPTKLMKEIGYG Y Y+ D P + KQ F
Sbjct: 332 NASYLAIGKAQQLVKQT--GDLSVPLPLRNAPTKLMKEIGYGDDYKYSHDFPGSFVKQEF 389
Query: 538 LPPSLEGYKFLDWPKSNTTDK 558
+PP + G +F + P +N +K
Sbjct: 390 MPPEISGTRFYE-PTNNAREK 409
>gi|353236527|emb|CCA68520.1| related to MGS1-Maintenance of Genome Stability 1 [Piriformospora
indica DSM 11827]
Length = 599
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 205/460 (44%), Positives = 279/460 (60%), Gaps = 52/460 (11%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP + D VGQ+HL +SLL V S + S+I WGPPG GKTTLA+ + S
Sbjct: 133 APLAERLRPRRLEDFVGQEHLTGDSSLLLQLVESQAIGSMILWGPPGCGKTTLARLLSKS 192
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V ++K LSA +SG DV+ ++A++ + KRT+LF+DE+ RFNK+QQD FLP +
Sbjct: 193 VNATFKE--LSATSSGTSDVKAIFDEAKRSLKLTGKRTILFMDEIQRFNKAQQDIFLPYV 250
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E+G I IGATTENPSF L + LLSRCRV L L+ D+E++L++A++ V+ +S G
Sbjct: 251 ENGWITLIGATTENPSFKLNSALLSRCRVFVLERLRDEDIEVILRKAIERVSPKVSSQEG 310
Query: 302 GT-------------RVEVNHD---------AIEFLCSNCDGDARVALNALEISAITAAV 339
+VEV + ++ + + GDAR AL+ LE+ +T+
Sbjct: 311 DVTSLPSSSQTLVEGQVEVKPEPRLREIAPEVMKTIVNLSMGDARTALSLLEL-VLTSPA 369
Query: 340 RVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSM 399
+V K V + + S YDR+GE+ Y++ISALHKS+
Sbjct: 370 KVSDKAVISLLRRSVSS-----------------------RYDRSGEDRYDMISALHKSI 406
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D AA+YWLARML GGE PLYIARRL+ ASEDVGLAD AL AV+ Y A +GM
Sbjct: 407 RGSDGSAALYWLARMLTGGEDPLYIARRLIVVASEDVGLADNHALPLAVATYSAAQTIGM 466
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PEC + LA CVAYLA APKS Y A A++ + + VPLHLRNAPT +MK++
Sbjct: 467 PECRINLAHCVAYLAEAPKSTRSYEAYNLAEEAAK--ADETAPVPLHLRNAPTGMMKDLN 524
Query: 520 YGKGYIYTPD-DPSAKQSFLPPSLEGYKFLDWPKSNTTDK 558
YG+GY+Y P Q++LP +LEG +FL + + TDK
Sbjct: 525 YGQGYLYNPAYRHPVYQTYLPATLEGSRFLR-EEGDVTDK 563
>gi|407695824|ref|YP_006820612.1| AAA ATPase [Alcanivorax dieselolei B5]
gi|407253162|gb|AFT70269.1| ATPase, AAA family, putative [Alcanivorax dieselolei B5]
Length = 448
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 204/430 (47%), Positives = 272/430 (63%), Gaps = 37/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP++++D VGQ HL++P LR V +L S+I WGPPGTGKTTLA ++ +
Sbjct: 20 PLAARLRPLSLDDYVGQSHLIAPGKPLRQVVERGQLHSMILWGPPGTGKTTLA--LILAG 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
AV +F+ LSAV SGVKD+R AVE A K R+ +RTVLFVDEVHRFNK+QQD+FLP +E
Sbjct: 78 AVDAEFITLSAVLSGVKDIRAAVEQA-KARLGQGRRTVLFVDEVHRFNKAQQDAFLPHVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L+ D+ LL RA+ + L+ V
Sbjct: 137 DGTVIFIGATTENPSFELNNALLSRARVYRLRSLERQDLSGLLDRALRQPD--LAAMV-- 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ DA + L DGDAR LN LE++ D +DG P V
Sbjct: 193 ----LEADARDLLLDYADGDARRLLNMLEVAM------------------DLADGDQPRV 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E + +D+ G+ Y+ ISALHKS+RG+D DAA+YW ARML+GG PL
Sbjct: 231 NRPLM---QEVLRDAVRRFDKGGDLFYDQISALHKSVRGSDPDAALYWFARMLDGGCDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL A++ ++ LG PE + +AQ + +LA+APKS ++
Sbjct: 288 YVARRVVRMASEDIGNADPRALTLALNAWEVQERLGSPEGELTIAQAIVFLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y A A++ + E NE VPLHLRNAPTKLMK GYG Y Y D P A +++ P
Sbjct: 348 YDAYNTARRFVAEH-PSNE-VPLHLRNAPTKLMKAEGYGAEYHYAHDYPDAFVDGENYFP 405
Query: 540 PSLEGYKFLD 549
P+L +F +
Sbjct: 406 PTLRDTRFYE 415
>gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
gi|347828470|emb|CCD44167.1| similar to ATPase [Botryotinia fuckeliana]
Length = 558
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 266/430 (61%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++++V GQ+ L+ P +LRS + +R+PS+I WG GTGKTT+A+ + +
Sbjct: 147 APLAERMRPRSLDEVCGQE-LVGPQGVLRSLIEQDRVPSMILWGGAGTGKTTIARCV--A 203
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV +++ +SGV +V+ +AR + ++T++F DE+HRF+KSQQD FL +
Sbjct: 204 TMVGSRFVEINSTSSGVGEVKKIFTEARGELGLTGRKTIIFCDEIHRFSKSQQDVFLGPV 263
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF + LLSRCR TL+ L D+ ++L+RA+ + +
Sbjct: 264 ESGQITLIGATTENPSFKVQNALLSRCRTFTLSKLTDDDILVILERALKTEGQNYTPT-- 321
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+ + +++L + DGDAR ALN LE+ A+ + R
Sbjct: 322 ---DLVDTELLKYLSTFSDGDARTALNLLEL-AMGLSTR--------------------- 356
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T +D K + K L YDRAG++HY+ ISA HKS+RG DADAA+Y+LARML+ GE P
Sbjct: 357 -PNITKEDIKASL-TKTLVYDRAGDQHYDTISAFHKSVRGGDADAALYYLARMLQSGEDP 414
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+V ASEDVGLAD L A S Y AC +GMPEC + +A L LAPKS
Sbjct: 415 LYIARRMVVMASEDVGLADNTMLTLATSTYTACEKIGMPECRITMAHTTVALCLAPKSTR 474
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLP 539
YR L A +RE N +P+HLRNAPTKLMKE+GYG Y Y P+ + Q +LP
Sbjct: 475 AYRGLNNAFSALREPGVANLSIPIHLRNAPTKLMKELGYGDQYKYNPNYKEGRVVQEYLP 534
Query: 540 PSLEGYKFLD 549
L G KFL+
Sbjct: 535 DELRGRKFLE 544
>gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
Length = 500
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 207/430 (48%), Positives = 269/430 (62%), Gaps = 28/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP + + VGQ HL+ P LLR A+ ++RL SII WGPPG+GKTTLA+ I +
Sbjct: 31 APLAERMRPRTLEEFVGQQHLVGPGRLLRRAIEADRLGSIILWGPPGSGKTTLARIIART 90
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F L+AVT+GV D+R VE+A++ R + TVLFVDEVHR+N++QQD+ LP +
Sbjct: 91 TRA--HFEPLNAVTAGVADLRRVVEEAKERRALEGRSTVLFVDEVHRWNRAQQDALLPHL 148
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENP F + PL+SR R+ L PL DV LL RA+ D GL G
Sbjct: 149 ESGLVALIGATTENPYFACVPPLVSRARIFRLEPLSDEDVRRLLLRALADPERGL----G 204
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
RVEV +A++ L GDAR ALNALE++ +T P E DG
Sbjct: 205 NYRVEVEPEALDHLVRVAGGDARSALNALELAVLT----TPPGE----------DG---- 246
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V +TL A+E+ Q + LAYD G+EHY+ +SAL KS+RG+D DAA+YWLARML GE P
Sbjct: 247 VRRITLAVAEESIQKRALAYDPTGDEHYDHLSALIKSIRGSDPDAAVYWLARMLYAGEDP 306
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
IARRL+ A+EDVGLADP AL A + A +GMPE + LA+ V YLA APKS +
Sbjct: 307 RAIARRLLVHAAEDVGLADPRALQVAAAAATAAEQVGMPEARIPLAEAVLYLATAPKSNA 366
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+ +A+ AA K + E GVP HLR+A + +G+GKGY Y D P +Q +LP
Sbjct: 367 VIKAIDAAWKAVEERA--IAGVPRHLRDAHYPGARALGHGKGYRYPHDYPGHFVRQQYLP 424
Query: 540 PSLEGYKFLD 549
L G +F +
Sbjct: 425 DELLGARFYE 434
>gi|410584321|ref|ZP_11321424.1| AAA ATPase [Thermaerobacter subterraneus DSM 13965]
gi|410504256|gb|EKP93767.1| AAA ATPase [Thermaerobacter subterraneus DSM 13965]
Length = 513
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 267/429 (62%), Gaps = 28/429 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ERMRP + + VGQ HL+ P LLR A+ ++RL SII WGPPG+GKTTLA+ I
Sbjct: 30 QAPLAERMRPRTLEEFVGQQHLVGPGRLLRRAIEADRLGSIILWGPPGSGKTTLARIIAR 89
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F L+AVT+GV D+R VE+AR+ + TVLFVDEVHR+N++QQD+ LP
Sbjct: 90 TTRA--HFEPLNAVTAGVGDLRRVVEEARERWALEGRSTVLFVDEVHRWNRAQQDALLPH 147
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENP F + PL+SR R+ L PL D+ LL RA+ D GL +
Sbjct: 148 LESGLVALIGATTENPYFACVPPLVSRARIFRLEPLSDDDMRQLLLRALADPERGLGR-- 205
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
R EV+ A+E L GDAR ALNALE++ +T +DG
Sbjct: 206 --YRAEVDPAALEHLVRVAGGDARTALNALELAVLTTP--------------PGADG--- 246
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V +TL A+E+ Q + LAYD AG+EHY+ +SAL KS+RG+D DAA+YWLARML GE
Sbjct: 247 -VRRITLAAAEESIQRRALAYDPAGDEHYDHMSALIKSIRGSDPDAAVYWLARMLYAGED 305
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P IARRL+ A+EDVGLADP AL A + A +GMPE + LA+ V YLA APKS
Sbjct: 306 PRTIARRLLVHAAEDVGLADPRALQVAAAAAAAAEQVGMPEARIPLAEAVLYLATAPKSN 365
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S+ RA+ AA + + E GVP HLR+A + + +G+G+GY Y D P +Q +L
Sbjct: 366 SVIRAIDAAWRAVEEQA--IAGVPRHLRDAHYRGARALGHGQGYRYPHDFPGHFVRQQYL 423
Query: 539 PPSLEGYKF 547
P L G +F
Sbjct: 424 PDELLGARF 432
>gi|302038840|ref|YP_003799162.1| replication-associated recombination protein A [Candidatus
Nitrospira defluvii]
gi|300606904|emb|CBK43237.1| Replication-associated recombination protein A [Candidatus
Nitrospira defluvii]
Length = 429
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 211/448 (47%), Positives = 269/448 (60%), Gaps = 41/448 (9%)
Query: 112 DSTTALHVP--------HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIF 163
DST L P PL+ERMRP + +D+VGQD ++ P LR+A+ ++L S+IF
Sbjct: 5 DSTGDLFAPAQTATRPGKVPLAERMRPRSFDDLVGQDEVVGPGRPLRNAIERDQLSSVIF 64
Query: 164 WGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFV 223
WGPPG GKTTLA + +FV SAVT G+ ++R+ ++ A R + T LFV
Sbjct: 65 WGPPGCGKTTLAGLVAQHT--ESQFVPFSAVTGGIPELREIIKAAEHRRAM-GRATTLFV 121
Query: 224 DEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEI 283
DE+HRFNK+QQD+FLP +E G++V IGATTENPSF LI PLLSR V+ L PL +
Sbjct: 122 DEIHRFNKAQQDAFLPHVERGTVVLIGATTENPSFELIAPLLSRSIVVLLKPLSEESLGS 181
Query: 284 LLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV 343
+L RAVDD GL G R+ + A E L + +GDAR L LE A A V
Sbjct: 182 ILDRAVDDRARGL----GSLRITLLPAARERLIAFGNGDARSLLTTLEFVAGQAPV---- 233
Query: 344 KEVKEVEQEDESDGCSPYVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRG 401
DG T+D+ + A K L YD++GEEHYNL+SA KS+R
Sbjct: 234 ----------GPDGSR------TIDEQVLEAALLKKALRYDKSGEEHYNLVSAYIKSLRD 277
Query: 402 NDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPE 461
+D D A+YWLARMLEGGE P +IARR+V FASED+G ADP+AL A + QA F+G+PE
Sbjct: 278 SDPDGALYWLARMLEGGENPRFIARRMVIFASEDIGNADPMALVMANAVAQAVEFVGLPE 337
Query: 462 CNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYG 521
+ LA YLA PK + Y L A + R+ N GVPLHLRNA T LMK+IGYG
Sbjct: 338 AQINLAHVTTYLASRPKDNASYVGLQEAVRDARQH--GNLGVPLHLRNAVTSLMKDIGYG 395
Query: 522 KGYIYTPDDPSAK--QSFLPPSLEGYKF 547
KGY Y DD +AK Q+ LP L G ++
Sbjct: 396 KGYRYVHDDSAAKTDQNHLPEPLRGTRY 423
>gi|345870503|ref|ZP_08822455.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
gi|343921706|gb|EGV32419.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
Length = 436
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 199/412 (48%), Positives = 262/412 (63%), Gaps = 31/412 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP +++ VGQ+ LL+P LR A+ S RL S+IFWGPPGTGKTT+A+ + +
Sbjct: 8 APLADRMRPADLDGFVGQEQLLAPGKPLRKAIESGRLHSMIFWGPPGTGKTTVARLVARN 67
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ LSAV SGVK++R+AV +A+ +R + TVLF+DEVHRFNK QQD+FLP +
Sbjct: 68 SGA--HFITLSAVLSGVKEIREAVAEAQNVRRLEQRGTVLFIDEVHRFNKGQQDAFLPHV 125
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E+G++ FIGATTENPSF L LLSR RV L L D+ +L A+ D GL G
Sbjct: 126 ENGTLTFIGATTENPSFSLNNALLSRARVYVLKSLTADDIRQVLVGALSDAERGL----G 181
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G +E+ ++ L DGDAR ALN L+++A A E +E E
Sbjct: 182 GQGLELPDESARLLAQAADGDARRALNLLDLAAQLA-------EAGRIEPE--------V 226
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VA V + +D+ G+ Y+ ISALHKS+RG+ DAA+YWLARM++GG P
Sbjct: 227 VAEVATASVRR--------FDKGGDIFYDQISALHKSVRGSSPDAALYWLARMIDGGCDP 278
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+VR ASED+G ADP AL+ A+ ++A LG PE ++LAQ V YLA A KS +
Sbjct: 279 LYIARRIVRMASEDIGNADPRALHLALDAWEAQERLGSPEGELMLAQAVVYLASAAKSNA 338
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
+Y A AA S N VP+HLRNAPTKLMKE+G+G+ Y Y D+P A
Sbjct: 339 VYVAWKAALTDANASGSLN--VPVHLRNAPTKLMKELGHGRAYRYAHDEPDA 388
>gi|302391510|ref|YP_003827330.1| recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
gi|302203587|gb|ADL12265.1| Recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
Length = 439
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 272/429 (63%), Gaps = 30/429 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP ++D GQ+ ++ P+ LLR A+ ++R+ S+I +GPPGTGKTTLA I N+
Sbjct: 16 APLADRMRPTTLDDFFGQEEIVGPDRLLRRAIKADRIQSLILYGPPGTGKTTLAMIIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F L+AVTSG+KD+R+ ++ A++ R +T+LF+DE+HRFNKSQQD+ LP +
Sbjct: 76 T--SSEFERLNAVTSGIKDIREIIKQAKERRRMYQTKTILFIDEIHRFNKSQQDALLPAV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENP F + +PL+SR RV L PL +++ +L +A+DD GL G
Sbjct: 134 EKGIIILIGATTENPYFEVNSPLVSRSRVFELKPLTKDNLKQILLKALDDTEQGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+V+V +A+E + +GDAR+ALNALE++ +T +G
Sbjct: 190 DYKVDVTQEALEHIAEMANGDARIALNALELAVLTTP----------------ENGTG-- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TL A+E+ Q + L YD+ G+ HY+ +SA KSMRG+D DA +YWLARM+E GE P
Sbjct: 232 IKEITLKVAEESIQQRSLDYDKTGDNHYDTVSAFIKSMRGSDPDATLYWLARMIEAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ A+EDVG ADP AL A S +A ++G+PE + LAQ Y+A APKS S
Sbjct: 292 KFIARRILVHAAEDVGNADPQALTVATSTARAVEYIGLPEARIPLAQAAVYIATAPKSNS 351
Query: 482 IYRALGAAQKVIR-ESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ + A K +R E+V G+P HL++ + +++ G GY Y + P KQ +L
Sbjct: 352 AIKGIDQALKAVRSETVS---GIPNHLKDTHYQEAEKLDRGIGYKYPYNYPQNYVKQQYL 408
Query: 539 PPSLEGYKF 547
P L +F
Sbjct: 409 PDELAKKRF 417
>gi|33597977|ref|NP_885620.1| recombination factor protein RarA [Bordetella parapertussis 12822]
gi|33602883|ref|NP_890443.1| recombination factor protein RarA [Bordetella bronchiseptica RB50]
gi|410421361|ref|YP_006901810.1| hypothetical protein BN115_3585 [Bordetella bronchiseptica MO149]
gi|427815898|ref|ZP_18982962.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|427818447|ref|ZP_18985510.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427825686|ref|ZP_18992748.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|33574406|emb|CAE38744.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33577325|emb|CAE35882.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|408448656|emb|CCJ60341.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|410566898|emb|CCN24468.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|410569447|emb|CCN17553.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410590951|emb|CCN06045.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 459
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 204/446 (45%), Positives = 270/446 (60%), Gaps = 33/446 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
+F L +D+ ++ H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S
Sbjct: 8 VFFLLSMSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS 67
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+IFWGPPG GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+
Sbjct: 68 MIFWGPPGVGKTTLARLMADGF--DAQFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTI 124
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LFVDEVHRFNKSQQD+FLP +E G FIGATTENPSF + + LLSR RV L L +
Sbjct: 125 LFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEE 184
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+ L+ RAV +N GL G ++ +A E L + DGDAR ++A+E+
Sbjct: 185 LMQLVDRAVAALNEGLED---GQQIRFEAEAREQLAAWADGDARRLISAVEV-------- 233
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSM 399
V E + D D +L ++L +D+ G+ Y+ ISALHKS+
Sbjct: 234 --VAESAQAAGRDSVDAAWLETSL-----------SQNLRRFDKGGDAFYDQISALHKSV 280
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D DAA+YWLARML+GG P Y+ARRLVR A ED+GLADP A AV+ LG
Sbjct: 281 RGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGS 340
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PE + LAQ V Y+A A KS ++Y A AA+K E + VPLHLRNAPTKLMK++G
Sbjct: 341 PEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEH--GSAPVPLHLRNAPTKLMKQLG 398
Query: 520 YGKGYIYTPDDP---SAKQSFLPPSL 542
+GK Y Y D P +A + + P L
Sbjct: 399 HGKAYRYAHDQPHAYAADEQYFPDGL 424
>gi|412341784|ref|YP_006970539.1| hypothetical protein BN112_4507 [Bordetella bronchiseptica 253]
gi|408771618|emb|CCJ56421.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 459
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 204/446 (45%), Positives = 270/446 (60%), Gaps = 33/446 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
+F L +D+ ++ H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S
Sbjct: 8 VFFLLSMSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS 67
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+IFWGPPG GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+
Sbjct: 68 MIFWGPPGVGKTTLARLMADGFDA--QFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTI 124
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LFVDEVHRFNKSQQD+FLP +E G FIGATTENPSF + + LLSR RV L L +
Sbjct: 125 LFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEE 184
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+ L+ RAV +N GL G ++ +A E L + DGDAR ++A+E+
Sbjct: 185 LMQLVDRAVAALNEGLED---GQQIRFEAEAREQLAAWADGDARRLISAVEV-------- 233
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSM 399
V E + D D +L ++L +D+ G+ Y+ ISALHKS+
Sbjct: 234 --VAESAQAAGRDSVDAAWLETSL-----------SQNLRRFDKGGDAFYDQISALHKSV 280
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D DAA+YWLARML+GG P Y+ARRLVR A ED+GLADP A AV+ LG
Sbjct: 281 RGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGS 340
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PE + LAQ V Y+A A KS ++Y A AA+K E + VPLHLRNAPTKLMK++G
Sbjct: 341 PEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEH--GSAPVPLHLRNAPTKLMKQLG 398
Query: 520 YGKGYIYTPDDP---SAKQSFLPPSL 542
+GK Y Y D P +A + + P L
Sbjct: 399 HGKAYRYAHDQPHAYAADEQYFPDGL 424
>gi|365826926|ref|ZP_09368807.1| hypothetical protein HMPREF0975_00590 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265564|gb|EHM95320.1| hypothetical protein HMPREF0975_00590 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 458
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 201/436 (46%), Positives = 266/436 (61%), Gaps = 32/436 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D + + P PL++R+RP ++DVVGQD LL+ ++ L V S RL SII WGPPG GK
Sbjct: 20 DGSGLIDDPSRPLADRLRPRALDDVVGQDQLLAADAPLGRMVASGRLSSIILWGPPGCGK 79
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + + ++ SA SGV D+R A + R + T+LFVDE+HRFN+
Sbjct: 80 TTIARLLADRTGLVFEQA--SATFSGVADLRKVFAAAARRR-DIGQGTLLFVDEIHRFNR 136
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +EDG+IV +GATTENPSF L LLSRC+V+ L L + LL RA
Sbjct: 137 AQQDSFLPYVEDGTIVLVGATTENPSFELGGALLSRCQVMVLRRLDDAALTELLARA--- 193
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE--ISAITAAVRVPVKEVKEV 349
+S+ G V + DA L S DGD R L +E ++A A P
Sbjct: 194 ------ESLTGRDVALTEDARTALVSMADGDGRYLLGMVEQVLAAQDAGGWTP------- 240
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
D G P + ++ + + YD++ EEHYNLISALHKSMRG+D DAA+Y
Sbjct: 241 ---DGPGGPEP----LDVEGLRAVVASRAPLYDKSREEHYNLISALHKSMRGSDPDAALY 293
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WL+RML GGE PLY+ARRLVRFASEDVG+ADP AL ++ + A LG PE + +AQ
Sbjct: 294 WLSRMLGGGEDPLYVARRLVRFASEDVGMADPAALQMTLAAWDAYERLGSPEGELAIAQA 353
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
V YLA APKSI++YR G A ++ RE+ P H+ NAPT+LMKE+GYG+GY Y PD
Sbjct: 354 VVYLATAPKSIAVYRGYGRAARLARETGSLMP--PAHILNAPTRLMKELGYGEGYEYDPD 411
Query: 530 --DPSAKQSFLPPSLE 543
D + +LP +E
Sbjct: 412 TADGFSGADYLPDGVE 427
>gi|397690778|ref|YP_006528032.1| AAA ATPase central domain protein [Melioribacter roseus P3M]
gi|395812270|gb|AFN75019.1| AAA ATPase central domain protein [Melioribacter roseus P3M]
Length = 431
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 197/443 (44%), Positives = 284/443 (64%), Gaps = 37/443 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKA 177
+P PL ER+RP ++++ +GQ+HL+ N +R + N++P S+I WGPPGTGKTTLA
Sbjct: 7 IPRIPLPERIRPQSLDEFIGQEHLVGKNKPIR-VMIENKIPGSLILWGPPGTGKTTLA-- 63
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
++ + A + +F L+AV+SGVKD+R +E A++ N+ T+LF+DE+HR+NKSQQD+
Sbjct: 64 VILAEATNSEFFQLNAVSSGVKDLRQVIEKAKE-NFLYNRNTLLFIDEIHRYNKSQQDAL 122
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
L +E G I IGATTENPSF +I PL SR R+ LN L D+ +L RAV+
Sbjct: 123 LSSVEKGEITLIGATTENPSFEIIPPLRSRLRIFVLNELSKEDLIKILNRAVEK-----D 177
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
+ + ++++ + ++L GDAR+ LN LE AAV + E++ E+
Sbjct: 178 EFLSSLKIKIENP--DYLIIASGGDARMMLNILE-----AAV------LHEIDNEE---- 220
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T + Q K++ YD++GEEHYNLISA KS+RG+D DAA+YWLARMLEG
Sbjct: 221 -----IVITKSLIENVLQKKNIIYDKSGEEHYNLISAFIKSIRGSDPDAAVYWLARMLEG 275
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PL+IARR+V A+ED+G A P AL A + ++ACH +GMPE +IL+QC YLA AP
Sbjct: 276 GEDPLFIARRMVILAAEDIGNAMPNALILAEAAFEACHKIGMPEARIILSQCATYLASAP 335
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS + Y A+ AQ+ ++ VP HLRNAPTKLMK +GYGK Y Y D P+ ++
Sbjct: 336 KSNAAYLAIQEAQRDVKNLPLY--PVPFHLRNAPTKLMKNLGYGKEYKYPHDYPAHFIEE 393
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
++LP ++G ++ P N +K
Sbjct: 394 NYLPEEMKGKQYYR-PTENGLEK 415
>gi|225568599|ref|ZP_03777624.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
15053]
gi|225162527|gb|EEG75146.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
15053]
Length = 438
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 269/430 (62%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP +++VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I N+
Sbjct: 16 APLASRLRPATLDEVVGQQHIIGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F ++A +G KD+ + V+ A++L+ KRT+LFVDE+HRFNK QQD LP +
Sbjct: 76 T--SAEFTQINATVAGKKDMEEVVKHAKELQGMYQKRTILFVDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR + L+PL D+ L++RA+ DV G+ G
Sbjct: 134 EDGTLILIGATTENPYFEVNGALISRSSIFELHPLDKEDIRTLIRRALTDVEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + DA+EFL GDAR ALNA+E+ +T E DG
Sbjct: 190 SYQAVIEEDALEFLADIAGGDARNALNAVELGVLTT--------------ERSEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A E Q + + YD++G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 235 ---ITLDVASECIQKRVVRYDKSGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+ALN AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICASEDVGNADPMALNVAVSAAQAAERIGMPEAQIILSQAVLYVATAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ A + +R+ VP HL+++ K+IG+G GY Y D P +Q +LP
Sbjct: 352 AVNAIADAMENVRQ---HKTTVPPHLQDSHYGGAKKIGHGIGYKYAHDYPHHYVEQQYLP 408
Query: 540 PSLEGYKFLD 549
+ G +F +
Sbjct: 409 SEIAGTRFYE 418
>gi|399050746|ref|ZP_10740790.1| AAA ATPase [Brevibacillus sp. CF112]
gi|433545177|ref|ZP_20501537.1| hypothetical protein D478_15804 [Brevibacillus agri BAB-2500]
gi|398051462|gb|EJL43784.1| AAA ATPase [Brevibacillus sp. CF112]
gi|432183566|gb|ELK41107.1| hypothetical protein D478_15804 [Brevibacillus agri BAB-2500]
Length = 452
Score = 360 bits (925), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 273/427 (63%), Gaps = 29/427 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I +V+GQ H+L+P LLR A+ ++++ S+IF+GPPGTGKTTLAK I +
Sbjct: 19 PLAARMRPKTIQEVIGQSHILAPGKLLRRAIEADQVSSLIFYGPPGTGKTTLAKVIARTT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F L+AVT+GV D+R V+ A++ V N+RT LFVDE+HRFNKSQQD+ LP +E
Sbjct: 79 RT--HFSELNAVTAGVADIRKVVDAAKERLVMDNQRTTLFVDEIHRFNKSQQDALLPYVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+I+ IGATTENP F + LLSR +V L L +++ +++RA++D NGL++
Sbjct: 137 EGTIILIGATTENPYFEVNPALLSRSQVFALQSLSHEELQQVMERALNDEENGLAE---- 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V V +A E L +GDAR LNALE+ A+T P DG
Sbjct: 193 LSVTVTKEAAEHLIQYAEGDARRLLNALEL-AVTTTPPGP-------------DGG---- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VTLD A E+ Q + + YD++G+ HY+ ISA KS+RG+D DAA+YWLARM++ GE P
Sbjct: 235 VTVTLDVAVESIQRRAVRYDKSGDNHYDTISAFIKSIRGSDPDAALYWLARMIDAGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+I+RRLV ASED+G ADP A++ AV+C+QA +GMPE + LAQ YLA APKS +
Sbjct: 295 FISRRLVISASEDIGNADPQAISVAVACFQAVELVGMPEGRIPLAQATTYLATAPKSNAA 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPP 540
Y + +A IR ++ VP+HLR++ K ++G+G+GY+Y D P Q +LP
Sbjct: 355 YNGINSALARIR--TDGHKQVPIHLRDSAYKGAAKLGHGQGYLYPHDYPYGYVPQQYLPD 412
Query: 541 SLEGYKF 547
+ Y F
Sbjct: 413 GVN-YSF 418
>gi|51244885|ref|YP_064769.1| recombination factor protein RarA [Desulfotalea psychrophila LSv54]
gi|50875922|emb|CAG35762.1| probable uncharacterized ATPase related to the helicase subunit of
the Holliday junction resolvase [Desulfotalea
psychrophila LSv54]
Length = 440
Score = 360 bits (925), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 263/429 (61%), Gaps = 39/429 (9%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER RP + ++ GQ+ LL S+LRS + + S I WGPPGTGKTT+A+ I
Sbjct: 17 APLAERARPQKLEEIHGQNKLLEKGSILRSMIEQDDYSSFILWGPPGTGKTTIARFI--E 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAV + + +V+ +E AR ++T++FVDE+HRFNKSQQD+FLP +
Sbjct: 75 THTKHIFASLSAVLTKIAEVKALMEQARFRLQAEGQKTLVFVDEIHRFNKSQQDAFLPYV 134
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+IV +GATTENPSF +I+ LLSRC V TL PL D++ ++ RA+ ++
Sbjct: 135 ESGAIVLLGATTENPSFEVISALLSRCHVFTLQPLSIEDIKSIMTRALKEIPR------- 187
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ A+ L GD R ALN LE A + A G S
Sbjct: 188 --EIHISDQALTMLAEKSGGDGRKALNHLETVARSGAT-----------------GDS-- 226
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ ++ A +A + L YD+ GEEH+NLISAL KS+RG+D AAIYWLARMLE GE P
Sbjct: 227 ---IDIEKAIQAISQRSLFYDKRGEEHFNLISALQKSIRGSDPQAAIYWLARMLESGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YI RRLVR A+EDVGLADP AL QAV+C A HFLGMPE N ++ Q V YLA APKS
Sbjct: 284 MYITRRLVRIATEDVGLADPQALVQAVACKDAVHFLGMPEANTVMTQLVIYLATAPKSNR 343
Query: 482 IYRA-LGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
+ A L A + ++ GQ++ VPL + NAPT+LM E+GY K Y Y+ D + + Q +
Sbjct: 344 VEIAYLQAREDALK--TGQHK-VPLDICNAPTRLMAELGYKKNYRYSHDYENSYSYQRYF 400
Query: 539 PPSLEGYKF 547
P +E ++
Sbjct: 401 PEEMEEQEY 409
>gi|452125743|ref|ZP_21938326.1| recombination factor protein RarA [Bordetella holmesii F627]
gi|451920838|gb|EMD70983.1| recombination factor protein RarA [Bordetella holmesii F627]
Length = 459
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 204/446 (45%), Positives = 270/446 (60%), Gaps = 33/446 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
+F L +D+ ++ H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S
Sbjct: 8 VFFLLSMSNDLFASDPPHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS 67
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+IFWGPPG GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+
Sbjct: 68 MIFWGPPGVGKTTLARLMAD--GFDAQFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTI 124
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LFVDEVHRFNKSQQD+FLP +E G FIGATTENPSF + + LLSR RV L L +
Sbjct: 125 LFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEE 184
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+ L+ RAV +N GL G ++ +A E L + DGDAR ++A+E+
Sbjct: 185 LMQLVDRAVAALNEGLED---GQQIRFETEAREQLAAWADGDARRLISAVEV-------- 233
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSM 399
V E + D D +L ++L +D+ G+ Y+ ISALHKS+
Sbjct: 234 --VAESAQAAGRDSVDAAWLETSL-----------SQNLRRFDKGGDAFYDQISALHKSV 280
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D DAA+YWLARML+GG P Y+ARRLVR A ED+GLADP A AV+ LG
Sbjct: 281 RGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGS 340
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PE + LAQ V Y+A A KS ++Y A AA+K E + VPLHLRNAPTKLMK++G
Sbjct: 341 PEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEH--GSAPVPLHLRNAPTKLMKQLG 398
Query: 520 YGKGYIYTPDDP---SAKQSFLPPSL 542
+GK Y Y D P +A + + P L
Sbjct: 399 HGKAYRYAHDQPHAYAADEQYFPDGL 424
>gi|395214514|ref|ZP_10400615.1| ATPase AAA [Pontibacter sp. BAB1700]
gi|394456240|gb|EJF10567.1| ATPase AAA [Pontibacter sp. BAB1700]
Length = 422
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 269/441 (60%), Gaps = 40/441 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P+ PL+ER+RP N++ GQ HL+ P+ +LR + +PS+I WGPPG GKTTLA I
Sbjct: 4 PNIPLAERLRPHNLDQYYGQKHLVGPDGILRRYIEGGVIPSMILWGPPGVGKTTLANIIA 63
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
N + V FV LSA+ SGVKD+R+ ++ A+K + TVLF+DE+HRFNKSQQD+ L
Sbjct: 64 NQMKVP--FVALSAINSGVKDIREVIDQAKK-----RQGTVLFIDEIHRFNKSQQDALLG 116
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G++ +GATTENPSF +I+ LLSRC+V L L ++ ++ V+ L +
Sbjct: 117 AVEKGTVTLVGATTENPSFEVISALLSRCQVYILKHLTKDEL-------IELVDKALEQD 169
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+V + E L + GDAR LN LEI A +G
Sbjct: 170 EWMRHRKVRIEEYEALLTISGGDARKLLNLLEIVA---------------------EGIK 208
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+VT D K+ Q + YD++GE HY+L+SA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 209 ADEVVVTNDLVKQVAQQNIVMYDKSGEMHYDLVSAFIKSIRGSDPNAAVYWLARMIEGGE 268
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRL+ ASED+GLA+ AL A +C+QA +G PE +IL+QC YLA +PKS
Sbjct: 269 DPKFIARRLLIAASEDIGLANANALLMATNCFQAVQMIGYPEAEIILSQCTIYLATSPKS 328
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y+A+ A+++++++ N VPLH+RNAPTKLMKEIGYG Y Y D +Q F
Sbjct: 329 NASYKAIKQARQLVQQT--GNLPVPLHIRNAPTKLMKEIGYGNNYKYAHDYEGNFVQQEF 386
Query: 538 LPPSLEGYKFLDWPKSNTTDK 558
+P L P +NT ++
Sbjct: 387 MPQELSNTALYQ-PGNNTRER 406
>gi|110598474|ref|ZP_01386745.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
gi|110339924|gb|EAT58428.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
Length = 447
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 199/426 (46%), Positives = 277/426 (65%), Gaps = 39/426 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++D+ GQ+HL+ P+ LR + S +LPS+IFWGPPG+GKTTLA+ + +
Sbjct: 26 PLAERVRPRSLDDMAGQEHLVGPSGPLRRFISSGQLPSMIFWGPPGSGKTTLAE--ICAA 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+++Y+F LSA+ SGVKDVR A+++A+K R S RT+LF+DE+HRFNK QQD+ L IE
Sbjct: 84 SLNYRFEQLSAIDSGVKDVRKALDNAQKSRA-SGLRTILFIDEIHRFNKGQQDTLLHAIE 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF + LLSR +V L PL+ ++ +++RA+ + + G
Sbjct: 143 QGLIVLIGATTENPSFEVNAALLSRMQVYILKPLQSEEILAVIRRALKE-----DRLFGE 197
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ +FL GDAR ALNA+E TA +P +D+++
Sbjct: 198 LQIEIADP--DFLLQFAGGDARKALNAVE----TALSLLP---------QDQTE------ 236
Query: 363 ALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ LD + A Q + YD+ GE HY++ISA KSMRG+D DAA++WLARM+EGGE
Sbjct: 237 --IVLDRELLERALQHRAPVYDKGGENHYDVISAFIKSMRGSDPDAALFWLARMIEGGED 294
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARR+V FASED+G ADP A+ A+S + A +GMPE + LAQ V YLA A KS
Sbjct: 295 PKFIARRMVIFASEDIGNADPYAITLAISIFHAVELIGMPEARINLAQGVTYLASAAKSN 354
Query: 481 SIYRALGAAQKVIRESV-GQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y+A+ A +RES Q+ VPLHLRNAPTKLMK+ GYG GY Y P +Q +
Sbjct: 355 ASYQAINEA---LRESGPMQDLAVPLHLRNAPTKLMKQEGYGAGYQYPHSYPGHFVRQDY 411
Query: 538 LPPSLE 543
P ++
Sbjct: 412 FPDGMD 417
>gi|335419731|ref|ZP_08550779.1| recombination factor protein RarA [Salinisphaera shabanensis E1L3A]
gi|334896058|gb|EGM34214.1| recombination factor protein RarA [Salinisphaera shabanensis E1L3A]
Length = 465
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 266/430 (61%), Gaps = 29/430 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + D VGQ H+L P+ L A+ + R+ S+I WGPPGTGKTTLA+ + V
Sbjct: 19 PLADRMRPARLADYVGQTHILGPDKPLARALAAGRIHSMILWGPPGTGKTTLARLLAAEV 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ +FV +SAV +GVKD+R AV +AR R + T+LFVDEVHRFNK+QQD LP +E
Sbjct: 79 DI--RFVQISAVMAGVKDIRAAVAEARTAREAEGRGTLLFVDEVHRFNKAQQDGLLPYVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF + LLSR R L L+P V L+ RA+DD +GL G
Sbjct: 137 DGTVVLVGATTENPSFEVNNALLSRTRTYVLRALEPVVVRELIDRALDDSEHGL----GA 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++++ + + L + DGDAR ALN LE++A AA R D+ G
Sbjct: 193 RELDMSAELRDQLAARADGDARRALNLLELAADIAAGR------------DDGRGE---- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D E + +D+ G+ Y+ +SALHKS+RG+D DA +YWL+RMLE G P
Sbjct: 237 --ITQADLDEVLREGLRRFDKGGDYFYDQMSALHKSVRGSDPDATLYWLSRMLEAGCDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ R ASED+G ADP AL + + LG PE + +AQ YLA APKS ++
Sbjct: 295 YVARRVTRMASEDIGNADPRALRLTLDAWDTYERLGSPEGELAIAQAAVYLACAPKSNAV 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + RE G E VP+H+RNAPTKLMK++GY GY Y ++ +A S+LP
Sbjct: 355 YMAFNAAWRDARER-GTLE-VPMHIRNAPTKLMKDLGYADGYRYAHNETEGYAAGDSYLP 412
Query: 540 PSLEGYKFLD 549
L G ++ +
Sbjct: 413 EELAGTRYYE 422
>gi|407473775|ref|YP_006788175.1| AAA ATPase [Clostridium acidurici 9a]
gi|407050283|gb|AFS78328.1| AAA ATPase, central domain protein [Clostridium acidurici 9a]
Length = 438
Score = 360 bits (925), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 188/439 (42%), Positives = 273/439 (62%), Gaps = 29/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP + + GQDH++ LL A+ ++++ SII +GPPGTGKTTLAK I N+
Sbjct: 16 APLADRMRPTTLEEYTGQDHIVGKGKLLYRAIKADKISSIILYGPPGTGKTTLAKIIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ KF L+AVTSG+KD+R+ +E +++ N+RT+LF+DE+HRFNKSQQD+ LP +
Sbjct: 76 TQM--KFEQLNAVTSGIKDIREVIEKSKEKLGMYNERTILFIDEIHRFNKSQQDALLPYV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E+G+++ IGATTENP F + L+SR + L PL D++ ++ A+DD + GL G
Sbjct: 134 ENGTLILIGATTENPYFEVNKALISRSMIFKLEPLSNEDIKKVILTALDDKDKGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ DA++ L +GDAR+ALN LE+ +T +D
Sbjct: 190 SFNINIDPDALKHLTDISNGDARIALNGLELGVLT------------------TDPNEKG 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TLD +E Q + + Y++ G+EHY+ +SA KSMRG+D DA +YWLA+ML GE P
Sbjct: 232 IINITLDIIQECVQQRAIKYEKNGDEHYDTVSAFIKSMRGSDPDATLYWLAKMLYAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL+ A S + A +F+GMPE +ILAQ Y+A APKS S
Sbjct: 292 KFIARRIIISASEDVGNADPQALSIATSAFDAVNFIGMPEGRIILAQAAVYIACAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLP 539
Y + A I+ Q VP HLR+A G GKGY+Y +D KQ +LP
Sbjct: 352 SYVGIDKALNDIKNI--QTGKVPAHLRDAHYSGSSNFGNGKGYLYPHNYEDGFIKQQYLP 409
Query: 540 PSLEGYKFLDWPKSNTTDK 558
++ G K+ + P +N +K
Sbjct: 410 DNMVGAKYYE-PTNNGYEK 427
>gi|270006572|gb|EFA03020.1| hypothetical protein TcasGA2_TC010443 [Tribolium castaneum]
Length = 478
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/401 (47%), Positives = 257/401 (64%), Gaps = 26/401 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA---KAIV 179
PL+++++P ++D +GQ H+L N++LR+ + +P+++ WGPPG GKT+L+ + I
Sbjct: 93 PLAKQLQPKCLDDFMGQSHVLGENTVLRTLLEKGDIPNMVLWGPPGCGKTSLSGVIQGIC 152
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
S KFV L A T+GVKDV++ V A KL+ K RTVLF+DE+HRFNK QQD FL
Sbjct: 153 KSNPTKLKFVSLCAATAGVKDVQNIVS-AAKLQQKFGCRTVLFMDEIHRFNKKQQDIFLL 211
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-NGLSK 298
+E G I+ +GATTENPSF + + LLSRCRV+ L L P + +L+R + N + K
Sbjct: 212 HVEKGDIILVGATTENPSFTVNSALLSRCRVIVLQKLDPDCLYQILERGARNFNVEVVDK 271
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
V DA+++L DGDAR+AL L++ V Q +E
Sbjct: 272 GARSKGFAVQADALKWLADISDGDARIALGNLQL----------------VLQYNEDKN- 314
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+VT++D KE + HL YDR GEEHYN+ISA+HKS+RG+D +AA+YW RM+ G
Sbjct: 315 ----KVVTIEDIKEKIKKSHLLYDRKGEEHYNVISAMHKSIRGSDPNAALYWTTRMIVSG 370
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PLYIARR+VR ASED+G ADP AL AVS Q C LGMPEC+V+LAQC YLA APK
Sbjct: 371 EDPLYIARRMVRAASEDIGNADPRALQLAVSTMQGCQLLGMPECDVLLAQCAIYLARAPK 430
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
S AL A+++I+ G VP+HLRNAPT+LMK++G
Sbjct: 431 SREADSALARAKQLIKSCEGLQPSVPMHLRNAPTRLMKDLG 471
>gi|291295124|ref|YP_003506522.1| AAA ATPase [Meiothermus ruber DSM 1279]
gi|290470083|gb|ADD27502.1| AAA ATPase central domain protein [Meiothermus ruber DSM 1279]
Length = 432
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/428 (46%), Positives = 258/428 (60%), Gaps = 43/428 (10%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP ++DVVGQ+HL P LR + + RL S I WGPPG+GKTTLA+ +
Sbjct: 15 APLAERLRPTTLDDVVGQEHLTGPGKPLRRMLETQRLSSFILWGPPGSGKTTLARLMAQG 74
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V + V LSAV +G+KD+++ V A++ VLF+DE+HRFNK+QQD+ LP +
Sbjct: 75 VGRA--MVALSAVNAGLKDIKEVVAQAQE-----QGGLVLFLDEIHRFNKAQQDALLPHV 127
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF + L SR RV L PL ++ LL+RA+
Sbjct: 128 ESGLLTLIGATTENPSFEVNPALRSRARVYVLEPLGQEAIQRLLERALHHPQ-------- 179
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G + +A+ + GDAR AL+ALE++A +V V
Sbjct: 180 GLPAQAEPEALHLIAQAAMGDARRALSALELAASLGEGQVSVAA---------------- 223
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A+EA L +D+ GE Y+LISALHKS+RGN DAA+Y+LARMLEGG P
Sbjct: 224 --------AREALGRGTLGFDKGGEHFYDLISALHKSVRGNHVDAALYYLARMLEGGADP 275
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL R A EDVGLADP AL A++ +A FLG PE + LA+ V YLALAPKS S
Sbjct: 276 LYLARRLARMAVEDVGLADPNALRLAMAAKEAYDFLGSPEGELALAELVVYLALAPKSNS 335
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQSFLP 539
+Y A AQ+ RE +PLHLRNAPT LM+++GYG+GY Y DDP S Q +LP
Sbjct: 336 VYVAWHKAQEAAREH--PTAPIPLHLRNAPTTLMQQMGYGRGYAYYHDDPEGSFAQRYLP 393
Query: 540 PSLEGYKF 547
+LEG +
Sbjct: 394 EALEGLEL 401
>gi|33593454|ref|NP_881098.1| recombination factor protein RarA [Bordetella pertussis Tohama I]
gi|384204749|ref|YP_005590488.1| recombination factor protein RarA [Bordetella pertussis CS]
gi|408416380|ref|YP_006627087.1| hypothetical protein BN118_2557 [Bordetella pertussis 18323]
gi|33572810|emb|CAE42743.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332382863|gb|AEE67710.1| recombination factor protein RarA [Bordetella pertussis CS]
gi|401778550|emb|CCJ63982.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 446
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 202/438 (46%), Positives = 267/438 (60%), Gaps = 33/438 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ ++ H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGFDA--QFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNKSQQD+FLP +E G FIGATTENPSF + + LLSR RV L L ++ L+ RA
Sbjct: 120 FNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V +N GL G ++ +A E L + DGDAR ++A+E+ V E +
Sbjct: 180 VAALNEGLED---GQQIRFEAEAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D +L ++L +D+ G+ Y+ ISALHKS+RG+D DAA
Sbjct: 227 AAGRDSVDAAWLETSL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSDPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YWLARML+GG P Y+ARRLVR A ED+GLADP A AV+ LG PE + LA
Sbjct: 276 LYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A AA+K E + VPLHLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNAARKFAAEH--GSAPVPLHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSL 542
D P +A + + P L
Sbjct: 394 HDQPHAYAADEQYFPDGL 411
>gi|404406179|ref|ZP_10997763.1| recombination factor protein RarA [Alistipes sp. JC136]
Length = 424
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 202/440 (45%), Positives = 265/440 (60%), Gaps = 38/440 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP I++ +GQ+HL+ N + R + +PS I WGPPG GKTTLAK + +
Sbjct: 3 APLAERLRPRTIDEYIGQEHLVGKNGVFRKFFETGNVPSFILWGPPGVGKTTLAKIV--A 60
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAVTSGVKDVR+ +E ARK R + LF+DE+HRFNKSQQDS L +
Sbjct: 61 TQLERPFFTLSAVTSGVKDVREVIESARKQRFFDQRPPFLFIDEIHRFNKSQQDSLLGAV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF +I+PLLSRC+V L L+ D+++LL RA+ +
Sbjct: 121 EQGVVTLIGATTENPSFEVISPLLSRCQVYILKSLEDKDLQVLLDRALTT-----DTELK 175
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEI--SAITAAVRVPVKEVKEVEQEDESDGCS 359
+EV F S GDAR LN L+I A V + + V + Q++
Sbjct: 176 ERDIEVTETGALFKFSG--GDARKLLNILDIVVGATDGKVTISDQYVTDCLQQN------ 227
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+AL YD+ GE+HY++ISA KS+RG+D +AAIY+LARML GGE
Sbjct: 228 --IAL----------------YDKNGEQHYDVISAFIKSVRGSDPNAAIYYLARMLAGGE 269
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+P ++ARRLV ASED+GLA+P AL A +C+ H +GMPE + LA+ YLA +PKS
Sbjct: 270 EPRFLARRLVILASEDIGLANPNALLLANACFDTVHKIGMPEARITLAETTIYLATSPKS 329
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y A+ A ++ E N VPLHLRNAPTKLM + GYGKGY Y D A+ F
Sbjct: 330 NSAYMAINKAMALV-EHDTTNRPVPLHLRNAPTKLMDKAGYGKGYKYAHDYAGHFAEIEF 388
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP SL G KF + N T+
Sbjct: 389 LPESLSGTKFYEPDTQNATE 408
>gi|322707738|gb|EFY99316.1| DNA replication ATPase [Metarhizium anisopliae ARSEF 23]
Length = 551
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 266/430 (61%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQD L+ PN +LR + +NR+PS+I WG GTGKTT+A+ I +
Sbjct: 137 APLAERMRPTTLDDVCGQD-LVGPNGVLRGLIETNRVPSMILWGASGTGKTTIARCIAH- 194
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A ++GV + + ++A + +RT++F DE+HRFNK+QQD FL +
Sbjct: 195 -MVGSRFIELNATSTGVSECKKLFQEAANELTLTGRRTIIFCDEIHRFNKAQQDVFLKPV 253
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + LLSRCR TL L D+ +LKRA + + V
Sbjct: 254 EAGTVTLIGATTENPSFKVANALLSRCRTFTLRSLTEQDITGILKRARE-----AEEVVY 308
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + + +L DGDAR ALN LE+ A+ + +E
Sbjct: 309 PPTPLIDDEMMGYLARFSDGDARTALNLLEV-----ALSLTTREG--------------- 348
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T +D K + K L YDR G++HY+ ISA HKS+RGNDADAA+Y+LARML+ GE P
Sbjct: 349 ---ITKEDIKSSL-TKTLVYDRGGDQHYDSISAFHKSVRGNDADAALYYLARMLQSGEDP 404
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C L LAPKS
Sbjct: 405 LFIARRMVVIASEDVGLADNTLLPLATAAYTATQQIGMPEARIPLAHCAIALCLAPKSTR 464
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YRAL +A +RE + VPLHLRNAPT+LM+++GYG Y Y P+ D +Q++LP
Sbjct: 465 AYRALNSAYAALREPGVASLPVPLHLRNAPTRLMRDMGYGAEYKYPPNYRDGRVRQTYLP 524
Query: 540 PSLEGYKFLD 549
L G +FL+
Sbjct: 525 GELVGRRFLE 534
>gi|319792075|ref|YP_004153715.1| aaa ATPase central domain-containing protein [Variovorax paradoxus
EPS]
gi|315594538|gb|ADU35604.1| AAA ATPase central domain protein [Variovorax paradoxus EPS]
Length = 430
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/433 (45%), Positives = 266/433 (61%), Gaps = 38/433 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ HLL P LR A S + S I WGPPGTGKTT+A+ + +
Sbjct: 6 HQPLAERLRPKTLGEVIGQQHLLGPGMSLRIAFESGQPHSCILWGPPGTGKTTIARLMAD 65
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+R+AVE A R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 66 --AFDAQFLSISAVLGGVKDIREAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDAFLP 123
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF + + LLSR V L PL D+E ++ +A +S
Sbjct: 124 HVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLTEGDLEQIVAKA---------QS 174
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ ++ AI+ L + DGDAR LN LE A+ A E ++
Sbjct: 175 IQAVPA-IDETAIDRLVAYADGDARRLLNTLETLAVAA------------RAEKLANISD 221
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YW RML+GG
Sbjct: 222 EWLLRVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWFVRMLDGGA 273
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APKS
Sbjct: 274 DPRYMARRLVRMASEDIGLADPRALRLALDAAEVYERLGTPEGELALAECVVYLAIAPKS 333
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y+A A + +I++ VP+HLRNAPTKLMKE+ YGKGY Y D+ +A ++
Sbjct: 334 NAVYKAYNAVRALIKKD--STRPVPMHLRNAPTKLMKELDYGKGYRYAHDEEGGFAAGEN 391
Query: 537 FLPPSLEGYKFLD 549
+LP LEG F +
Sbjct: 392 YLPEGLEGQVFYE 404
>gi|218961662|ref|YP_001741437.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
gi|167730319|emb|CAO81231.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans str.
Evry]
Length = 437
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/404 (46%), Positives = 258/404 (63%), Gaps = 37/404 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E++RP + +++GQ L++ NS LR + S S I WGPPG+GKTT+A+ I +
Sbjct: 21 PLAEKLRPQTLEELLGQTKLIAENSPLRQMIESGEYHSFILWGPPGSGKTTIARIIEKNS 80
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
Y F+ SAV + + DV+ +++A L NKR++LF+DE+HRFNKSQQD+FLP +E
Sbjct: 81 G--YNFIRFSAVLASISDVKAVMKEADYLHRTQNKRSILFIDEIHRFNKSQQDAFLPYVE 138
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+ IGATTENPSF +I LLSRC V L L +D++I+LKR ++
Sbjct: 139 SGAIILIGATTENPSFEVIPALLSRCTVFVLEALSENDLKIILKRGFAEL---------- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E + + I ++ N GDAR LN LE+ +P + K + +E + ++
Sbjct: 189 -KLEEDEEIINWMAQNAGGDARRVLNDLELV-------LPYLQKKPHPKTEE---LAKFL 237
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A K + YD+ EEHYNLISALHKS+RG+D A +YWLARMLE GE P
Sbjct: 238 A------------KKTMFYDKNREEHYNLISALHKSLRGSDPQAGLYWLARMLEAGEDPR 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YI RRL+RFASEDVGLADP AL QA++ +A F+GMPE + LAQ V YLA APKS ++
Sbjct: 286 YIVRRLIRFASEDVGLADPNALVQAIAVKEAVLFIGMPEASTALAQLVVYLATAPKSNAL 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY 526
Y A A + R++ + GVPLH+RNAPT+LMK++ YGK Y Y
Sbjct: 346 YTAYEEAAEDARKT--SHYGVPLHIRNAPTQLMKDLNYGKDYHY 387
>gi|385809318|ref|YP_005845714.1| ATPase protein [Ignavibacterium album JCM 16511]
gi|383801366|gb|AFH48446.1| Putative ATPase protein [Ignavibacterium album JCM 16511]
Length = 430
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/432 (46%), Positives = 265/432 (61%), Gaps = 36/432 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+P PL+ER+RP ++D VGQ HLL +R + ++ L S I WGPPG+GKTT+A+ I
Sbjct: 6 IPSVPLAERIRPKTMSDFVGQSHLLGEGKPIRLMIENDTLSSFILWGPPGSGKTTIARII 65
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
N +F L+AV+SGVKDVR +E A + + K KRT+LF+DE+HRFNK+QQD+ L
Sbjct: 66 ANQT--QSEFFSLNAVSSGVKDVRHVIELAEQNK-KIGKRTILFIDEIHRFNKAQQDALL 122
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
IE G ++ IGATTENPSF +I L SR RV LN L D LLK ++ L K
Sbjct: 123 HSIESGLLILIGATTENPSFEVIPALRSRARVFVLNELSKDD---LLKI----IDYALEK 175
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+ + + EFL GDAR+ LN LE S+I + + KE+
Sbjct: 176 DELLSSLNIKSIDREFLIYLSGGDARILLNILEASSIQEMNKGEIILTKEI--------- 226
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+ Q K++ YD+AGEEHYN+ISA KS+RG+D DAA+YWLARM+EGG
Sbjct: 227 -----------FENVVQRKNIIYDKAGEEHYNVISAFIKSIRGSDPDAALYWLARMIEGG 275
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E PL+IARRLV ASED+G A P AL A + + A +GMPE +ILAQCV YLA APK
Sbjct: 276 EDPLFIARRLVILASEDIGNASPNALVLAEAAFSAVDKIGMPEARIILAQCVTYLASAPK 335
Query: 479 SISIYRALGAAQKVIRES-VGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
S + Y + A + +R++ V Q VPLHLRNAPTKLMKE GYG Y Y D D ++
Sbjct: 336 SNASYLGIEKALEEVRKNPVAQ---VPLHLRNAPTKLMKEFGYGSEYKYAHDYQDHFVEE 392
Query: 536 SFLPPSLEGYKF 547
++LP L G +F
Sbjct: 393 NYLPDELVGKQF 404
>gi|329910976|ref|ZP_08275423.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
gi|327546035|gb|EGF31112.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
Length = 431
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/432 (47%), Positives = 261/432 (60%), Gaps = 42/432 (9%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP ++ V+GQ HLL P LR A S S+I WGPPG GKTTLA+ + +S
Sbjct: 4 APLAERLRPTTLDQVIGQQHLLGPGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMADS 63
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A F+ LSAV SGVKD+R+AVE A+ R +RT+LFVDEVHRFNKSQQD+FLP +
Sbjct: 64 FAAD--FIALSAVLSGVKDIREAVERAQLSRGAMGRRTILFVDEVHRFNKSQQDAFLPHV 121
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G FIGATTENPSF + LLSR V L L D+ LL RA D+ +GL
Sbjct: 122 ESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEDDLGQLLDRACRDLLDGL----- 176
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ DA L ++ DGD R LN LEI A AA +
Sbjct: 177 ----QFADDAKTTLVASADGDGRKLLNNLEIVARAAAAKS-------------------- 212
Query: 362 VALVTLDDAKEAFQCKHLA---YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
V L DA +C A +D+ G+ Y+ ISALHKS+RG++ DAA+YWL RML+GG
Sbjct: 213 ---VVLVDAALLSECLGDALRRFDKGGDTFYDQISALHKSVRGSNPDAALYWLVRMLDGG 269
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARRL+R ASED+GLADP AL + + LG PE + LA+ V YLA A K
Sbjct: 270 ADPRYLARRLIRMASEDIGLADPRALRLTLDATETYERLGSPEGELALAEAVIYLACAAK 329
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S ++Y A AA+ I + ++ VP HLRNAPTKLMKE+GYGK Y Y D+P +A +
Sbjct: 330 SNAVYNAYNAARAFIAKD--KSRPVPEHLRNAPTKLMKELGYGKLYRYAHDEPDAFAAGE 387
Query: 536 SFLPPSLEGYKF 547
++LP +EG ++
Sbjct: 388 TYLPEGMEGTQW 399
>gi|407716370|ref|YP_006837650.1| ATPase [Cycloclasticus sp. P1]
gi|407256706|gb|AFT67147.1| ATPase, AAA family domain protein [Cycloclasticus sp. P1]
Length = 432
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 195/433 (45%), Positives = 263/433 (60%), Gaps = 32/433 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL++R+RP ++ + GQ HLLS L A+ S +L S++ WGPPG GKTTLA+ I
Sbjct: 3 PSEPLADRLRPTSLQEFSGQQHLLSEGKPLYEAIQSGQLHSLVLWGPPGVGKTTLARIIA 62
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F+ LSAV +GVKD+R VE A+K R+ + T+LFVDEVHRFNKSQQD+FLP
Sbjct: 63 QQAEAD--FISLSAVLAGVKDIRAVVEQAKKNRIDKQQNTLLFVDEVHRFNKSQQDAFLP 120
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF L LLSR RV TL L+ D+ +L A+ D N GL
Sbjct: 121 HVEAGVFTFIGATTENPSFSLNNALLSRARVYTLKSLEEDDLRAILNHALTDKNKGLD-- 178
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
++ ++++AI+ L + D DAR LN +E+SA A+ + E DG
Sbjct: 179 ---SQFTIDNEAIQLLLNASDKDARRLLNFIELSAQLASANEHKTITTNIINEVVQDGVR 235
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+D GE+ YN ISALHKS+RG+D DA++YWL RML+GG
Sbjct: 236 --------------------RFDNHGEDFYNQISALHKSVRGSDPDASLYWLKRMLDGGC 275
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARR+VR ASED+G ADP AL A++ ++ LG PE + LAQ V YLA A KS
Sbjct: 276 DPLYVARRIVRIASEDIGNADPRALQIALNAWETQEKLGSPEGELALAQAVIYLACAAKS 335
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A A VI+++ + VP HLRNAPT LMK+ GY +GY Y ++P +A ++
Sbjct: 336 NAVYSAFNAVDSVIKKTGSLD--VPYHLRNAPTALMKQEGYHEGYRYAHNEPNAFAAGEN 393
Query: 537 FLPPSLEGYKFLD 549
+LP +L G + +
Sbjct: 394 YLPEALIGSTYYE 406
>gi|326772947|ref|ZP_08232231.1| ATPase, AAA family [Actinomyces viscosus C505]
gi|326637579|gb|EGE38481.1| ATPase, AAA family [Actinomyces viscosus C505]
Length = 477
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 197/434 (45%), Positives = 267/434 (61%), Gaps = 36/434 (8%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D + + P PL++R+RP ++DVVGQD LL+ ++ L V S RL SII WGPPG GK
Sbjct: 20 DGSGFVDDPSRPLADRLRPRALDDVVGQDQLLADDAPLGRMVASGRLSSIILWGPPGCGK 79
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + + ++ V SA SGV D+R A + R + + T+LFVDE+HRFN+
Sbjct: 80 TTIARLLADRTGLVFEQV--SATFSGVADLRKVFTAAARRR-EIGQGTLLFVDEIHRFNR 136
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +EDG++V +GATTENPSF L LLSRC+V+ L L + LL RA
Sbjct: 137 AQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVMVLRRLDEAALTELLARA--- 193
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+S+ G + + DA L S DGD R L +E +V
Sbjct: 194 ------ESLTGRSLALTEDARTALLSMADGDGRYLLGMVE----------------QVLA 231
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
++ G P + ++ + + YD++ EEHYNLISALHKSMRG+D DAA+YWL
Sbjct: 232 AQDAGGPEP----LDVEGLRGVIASRAPLYDKSHEEHYNLISALHKSMRGSDPDAALYWL 287
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARML GGE PLY+ARRLVRFASEDVG+ADP AL ++ + A LG PE + +AQ V
Sbjct: 288 ARMLGGGEDPLYVARRLVRFASEDVGMADPAALQVTLAAWDAYERLGSPEGELAIAQAVV 347
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-- 529
YLA APKSI++YR G A ++ R++ + P H+ NAPT+LMKE+GYG+GY Y PD
Sbjct: 348 YLATAPKSIAVYRGYGRAVRLARQT--GSLVPPAHILNAPTRLMKELGYGEGYEYDPDTA 405
Query: 530 DPSAKQSFLPPSLE 543
D + +LP +E
Sbjct: 406 DGFSGADYLPDGVE 419
>gi|283138944|gb|ADB12547.1| ATPase [uncultured bacterium 9F08]
Length = 449
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/429 (47%), Positives = 262/429 (61%), Gaps = 33/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + GQ HLL LR A+ S L S+IFWGPPGTGKTTLA+ I
Sbjct: 18 PLADRMRPRTPAEFFGQQHLLGEGKPLRQAIDSGNLHSMIFWGPPGTGKTTLARMIAGHG 77
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ +SAV SGVK++R AVE AR+ R + + TVLFVDEVHRFNKSQQD+FLP IE
Sbjct: 78 EA--QFITISAVLSGVKEIRAAVEQARQAR-QRGQATVLFVDEVHRFNKSQQDAFLPHIE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+ FIGATTENPSF L LLSR RV L L ++E +L++A+ D GL G
Sbjct: 135 DGTFTFIGATTENPSFELNNALLSRARVYVLKSLDSAEIETILQQALTDPERGL-----G 189
Query: 303 TRVEVNHDAIEF-LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R V D + + DGDAR ALN LEI+A A P + V+ + +E
Sbjct: 190 RRPLVLADTLRRRIAEAADGDARRALNLLEIAADLAE---PGEGVEIIAEE--------- 237
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
TL+ E +D+ GE Y+ ISALHKS+RG+D DA +YW ARM++GG P
Sbjct: 238 ----TLN---EVLSGGVRRFDKGGEAFYDQISALHKSVRGSDPDATLYWFARMIDGGVDP 290
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR+VR ASED+G ADP L A++ + LG PE + +AQ + YLA APKS +
Sbjct: 291 LYVARRVVRMASEDIGNADPRGLQLALNAWDVQERLGSPEGELAIAQALVYLACAPKSNA 350
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A +R G + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A +S+
Sbjct: 351 VYMGFNNAMAEVR--AGSSYEVPVHLRNAPTKLMKELGYGRAYRYAHDEPEAYAAGESYF 408
Query: 539 PPSLEGYKF 547
P + F
Sbjct: 409 PEEMTQRHF 417
>gi|156741065|ref|YP_001431194.1| recombination factor protein RarA [Roseiflexus castenholzii DSM
13941]
gi|156232393|gb|ABU57176.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
13941]
Length = 544
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 274/429 (63%), Gaps = 27/429 (6%)
Query: 106 KTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWG 165
KT D AL APL+ RMRP +++ VGQDH++ LLR A+ ++ L SII WG
Sbjct: 6 KTLFDTQREEALSR-QAPLAARMRPRALDEFVGQDHIVGEGKLLRRAITNDALFSIILWG 64
Query: 166 PPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225
PPG+GKTTLA+ I ++ F LSAV++GV D+R V++A+ +RT++F+DE
Sbjct: 65 PPGSGKTTLARIIADTTHA--HFEQLSAVSAGVADLRRVVKEAQDRLGMFQQRTIVFIDE 122
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+HRFNK+QQD+ LP +EDG+I+ IGATTENPSF + L SR RV L L + +++
Sbjct: 123 IHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVNPALRSRARVFVLESLTDEQIGVIV 182
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKE 345
RA+ D GL G V + DA +L + +GDAR ALNALE +A+ + + K
Sbjct: 183 DRALTDAERGL----GALNVLLAADARGYLINMSNGDARTALNALEAAALAKSPGIGGKR 238
Query: 346 VKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD 405
L+T+DD ++A Q + + YD+ GE HY+ ISALHKS+R +D D
Sbjct: 239 ------------------LLTVDDIRDALQSRAVQYDKNGELHYDAISALHKSVRDSDPD 280
Query: 406 AAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVI 465
AA+YWL RML+GGE PLYIARR+VR A ED+G+ADP AL ++ QA HFLG PE ++
Sbjct: 281 AALYWLGRMLDGGEDPLYIARRVVRMAIEDIGMADPHALPLTIAAQQAVHFLGQPEGDLA 340
Query: 466 LAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI 525
LAQ V YLA APKS ++Y A AA + E+ +NE VPLHLRNAPT LMK +GY +GY
Sbjct: 341 LAQAVVYLAQAPKSNAVYVAYAAALNDVAET--RNEPVPLHLRNAPTALMKRLGYARGYK 398
Query: 526 YTPDDPSAK 534
Y DD A+
Sbjct: 399 YAHDDDDAQ 407
>gi|452129105|ref|ZP_21941681.1| recombination factor protein RarA [Bordetella holmesii H558]
gi|451924975|gb|EMD75115.1| recombination factor protein RarA [Bordetella holmesii H558]
Length = 459
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 270/446 (60%), Gaps = 33/446 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
+F L +D+ ++ H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S
Sbjct: 8 VFFLLSMSNDLFASDPPHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHS 67
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+IFWGPPG GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+
Sbjct: 68 MIFWGPPGVGKTTLARLMAD--GFDAQFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTI 124
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LFVDEVHRFNKSQQD+FLP +E G FIGATTENPSF + + LLSR RV L L +
Sbjct: 125 LFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEE 184
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+ L+ RAV +N GL G ++ +A E L + DGDAR ++A+E+
Sbjct: 185 LMQLVDRAVAALNEGLED---GQQIRFETEAREQLAAWADGDARRLISAVEV-------- 233
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSM 399
V E + D D +L ++L +D+ G+ Y+ ISALHKS+
Sbjct: 234 --VAESAQAAGRDSVDAAWLETSL-----------SQNLRRFDKGGDAFYDQISALHKSV 280
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D +AA+YWLARML+GG P Y+ARRLVR A ED+GLADP A AV+ LG
Sbjct: 281 RGSDPNAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGS 340
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PE + LAQ V Y+A A KS ++Y A AA+K E + VPLHLRNAPTKLMK++G
Sbjct: 341 PEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEH--GSAPVPLHLRNAPTKLMKQLG 398
Query: 520 YGKGYIYTPDDP---SAKQSFLPPSL 542
+GK Y Y D P +A + + P L
Sbjct: 399 HGKAYRYAHDQPHAYAADEQYFPDGL 424
>gi|435854507|ref|YP_007315826.1| AAA ATPase [Halobacteroides halobius DSM 5150]
gi|433670918|gb|AGB41733.1| AAA ATPase [Halobacteroides halobius DSM 5150]
Length = 436
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/435 (44%), Positives = 270/435 (62%), Gaps = 31/435 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++ VGQ+ ++ LLR A+ ++RL S+IF+GPPGTGKTTLAK I N+
Sbjct: 16 PLAARMRPQNLDEFVGQEEIVGQGRLLRRAIKADRLQSVIFYGPPGTGKTTLAKVIANTT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F L+AVTSGVKD+R + A++ R N TVLF+DE+HRFNKSQQD+ LP +E
Sbjct: 76 EA--EFESLNAVTSGVKDLRQIISRAKERRGMYNTETVLFIDEIHRFNKSQQDALLPAVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENP F + +PL+SR R+ L L D+ +LKRA+ D GL G
Sbjct: 134 KGTVTLIGATTENPYFEVNSPLVSRSRIFQLQLLDKQDIIEILKRALKDEARGL----GR 189
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITA-AVRVPVKEVKEVEQEDESDGCSPY 361
VE+ A++ L +GDAR ALNALE++ +T + VKE+
Sbjct: 190 YEVEIETKALKHLAQVANGDARQALNALELAVLTTPESKRGVKEI--------------- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
TL+ A+E+ Q K + YD+ G+ HYN+ISA KS+RG+D DAA+YWLA+M++ GE P
Sbjct: 235 ----TLEVAEESIQQKAIKYDQNGDNHYNVISAFVKSLRGSDPDAALYWLAKMIKAGEDP 290
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+YIARR++ A+EDVG A+P AL AVS +A ++G+PE + LAQ Y+A KS +
Sbjct: 291 MYIARRMIVHAAEDVGNANPHALMVAVSATRAVEYVGLPEARIPLAQAALYIATVSKSNA 350
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+ + + +A K + E GVP HL++ KE+G+G Y Y D P+ Q +LP
Sbjct: 351 VIKGIDSALKAVEEE--NTSGVPTHLKDNHYPGAKELGHGASYRYPHDYPNNYVPQQYLP 408
Query: 540 PSLEGYKFLDWPKSN 554
L KF P +N
Sbjct: 409 DELSEAKFYQ-PTTN 422
>gi|384085335|ref|ZP_09996510.1| ATPase, AAA family protein [Acidithiobacillus thiooxidans ATCC
19377]
Length = 441
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 198/430 (46%), Positives = 261/430 (60%), Gaps = 31/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++ D VGQ HLL N LR+ + S L S+I WGPPGTGKTTLA+ + S
Sbjct: 9 PLAARLRPRSLEDYVGQKHLLGDNGPLRAMLRSRHLHSMILWGPPGTGKTTLAQLLARSA 68
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F LSAV SGVK++R A+ A + R + TVLF+DE+HRFNK+QQD+ LP +E
Sbjct: 69 GC--QFQILSAVNSGVKEIRAAISSAEQTRAQGQD-TVLFIDEIHRFNKAQQDALLPYVE 125
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G I+ IGATTENPSF L+ LLSR RV L L D+ +L+RA+ D GL G
Sbjct: 126 EGVIILIGATTENPSFALVNALLSRARVYVLKALDVTDLAHILERALSDEIQGL----GA 181
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + L DGDAR LN L+++ V+ E+ +++ + V
Sbjct: 182 IPIDFPPELRQGLLLAADGDARRLLNLLDLA------------VQLAERHEDAVKITAQV 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ + F D+ GE Y+ ISA HKS+RG+D DAA+YWLARML+GG PL
Sbjct: 230 LIAATGQSWRRF-------DKGGEAFYDEISAFHKSLRGSDPDAALYWLARMLDGGADPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVR ASEDVGLADP AL A++ A FLG PE + LAQ YLA +PKS +
Sbjct: 283 YLARRLVRMASEDVGLADPRALEMALAARDAYQFLGSPEGELALAQVTVYLASSPKSNRV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y A AQ +++ G ++ VPLHLRNAPTKL+K + YGK Y Y D P A Q + P
Sbjct: 343 YTAWNKAQALVK--AGSSQEVPLHLRNAPTKLLKTLDYGKEYQYDHDYPDAIAPNQEYFP 400
Query: 540 PSLEGYKFLD 549
L G +F D
Sbjct: 401 ARLIGTRFYD 410
>gi|410471922|ref|YP_006895203.1| hypothetical protein BN117_1205 [Bordetella parapertussis Bpp5]
gi|408442032|emb|CCJ48538.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 459
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 269/446 (60%), Gaps = 33/446 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
+F L +D+ ++ H P+ PL+ER+RP ++DVVGQ HLL + LR A S R S
Sbjct: 8 VFFLLSMSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGSDKPLRVAFDSGRPHS 67
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+IFWGPPG GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+
Sbjct: 68 MIFWGPPGVGKTTLARLMAD--GFDAQFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTI 124
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LFVDEVHRFNKSQQD+FLP +E G FIGATTENPSF + + LLSR RV L L +
Sbjct: 125 LFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEE 184
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+ L+ RAV +N GL G ++ +A E L + DGDAR ++A+E+
Sbjct: 185 LMQLVDRAVAALNEGLED---GQQIRFEAEAREQLAAWADGDARRLISAVEV-------- 233
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSM 399
V E + D D +L ++L +D+ G+ Y+ ISALHKS+
Sbjct: 234 --VAESAQAAGRDSVDAAWLETSL-----------SQNLRRFDKGGDAFYDQISALHKSV 280
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
RG+D DAA+YWLARML+GG P Y+ARRLVR A ED+GLADP A AV+ LG
Sbjct: 281 RGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGS 340
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PE + LAQ V Y+A A KS ++Y A AA+K E + VPLHLRNAPTKLMK++G
Sbjct: 341 PEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEH--GSAPVPLHLRNAPTKLMKQLG 398
Query: 520 YGKGYIYTPDDP---SAKQSFLPPSL 542
+GK Y Y D P +A + + P L
Sbjct: 399 HGKAYRYVHDQPHAYAADEQYFPDGL 424
>gi|441521402|ref|ZP_21003062.1| putative ATPase [Gordonia sihwensis NBRC 108236]
gi|441458918|dbj|GAC61023.1| putative ATPase [Gordonia sihwensis NBRC 108236]
Length = 433
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 259/423 (61%), Gaps = 41/423 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +I VVGQDHLL P+ + V RL S+I WGPPG GKTT+A+ +
Sbjct: 15 PLADRMRPRSITQVVGQDHLLGPDGAIGQMVAEKRLASMILWGPPGCGKTTIARLLAEQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSA +GV D+R A K R + + T+LFVDEVHRFN++QQDSFLP +E
Sbjct: 75 DLV--FEPLSATFAGVADLRKVFRAAEKRR-ELGRGTLLFVDEVHRFNRAQQDSFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSRCRV L L+ + L++RA +++ G
Sbjct: 132 DGTVVLVGATTENPSFELNPALLSRCRVFVLKRLEEAALVELVERA---------ETLTG 182
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ +A + L + DGD R LN +E + PV G V
Sbjct: 183 RELPLDGEARQALIAMADGDGRYLLNLVEQ---LGHISTPV-------------GVDELV 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LV Q + YD++ E HYNLISALHKSMRG+DADAA+YWLARML+GGE PL
Sbjct: 227 PLV---------QQRAPLYDKSQEGHYNLISALHKSMRGSDADAALYWLARMLDGGEDPL 277
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VRFA+EDVG+ADP AL QA++ + LG PE + +AQ V YLA APKS+++
Sbjct: 278 YIARRIVRFAAEDVGMADPRALAQALAAWDTYERLGSPEGELAIAQAVVYLATAPKSVAV 337
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
YR GAA+ + R + P H+ NAPT LM+E+GYG GY Y PD D + + P
Sbjct: 338 YRGFGAARALARRTGSLMP--PKHILNAPTGLMRELGYGAGYRYDPDTEDGFSGADYFPE 395
Query: 541 SLE 543
LE
Sbjct: 396 GLE 398
>gi|346307894|ref|ZP_08850023.1| hypothetical protein HMPREF9457_01732 [Dorea formicigenerans
4_6_53AFAA]
gi|345904626|gb|EGX74372.1| hypothetical protein HMPREF9457_01732 [Dorea formicigenerans
4_6_53AFAA]
Length = 439
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 273/439 (62%), Gaps = 30/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP + +VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I ++
Sbjct: 16 APLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIAHT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F ++A +G KD+ + V+ A++ K+T+LFVDE+HRFNK QQD LP +
Sbjct: 76 T--SAEFTQINATVAGKKDMEEVVQKAKETLGMYQKKTILFVDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR + L+PL+ D++ LLKRAV D G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNGALISRSSIFELHPLEKEDIKTLLKRAVYDQEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
E++ +A+EFL GDAR ALNA+E+ +T E +DG
Sbjct: 190 SYHAEIDEEALEFLADIAGGDARNALNAIELGILTT--------------ERSADGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 235 ---ITLDVASECIQKRVVRYDKTGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDV 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS +
Sbjct: 292 KFIARRIMICASEDVGNADPMALQVAVSAAQAVERIGMPESQIILSQAVTYVATAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+A+ AA + +R VP HL++A K +++G+G GY Y D P+ +Q ++P
Sbjct: 352 AVKAISAAMENVR---NYKTTVPAHLQDAHYKGSQKLGHGVGYKYAHDYPNHYVEQQYMP 408
Query: 540 PSLEGYKFLDWPKSNTTDK 558
+ KF + P N +K
Sbjct: 409 SEIPKAKFYE-PSDNGHEK 426
>gi|311104419|ref|YP_003977272.1| magnesium chelatase subunit ChlI family protein 1 [Achromobacter
xylosoxidans A8]
gi|310759108|gb|ADP14557.1| magnesium chelatase, subunit ChlI family protein 1 [Achromobacter
xylosoxidans A8]
Length = 446
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 197/438 (44%), Positives = 271/438 (61%), Gaps = 33/438 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGF--DAQFIAISAVLGGVKDIRDAVTVA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTAEELQQLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V +N+GL + G R+ V+ DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 VQALNDGLEE---GERIHVDADAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D ++L ++L +D+ G+ Y+ ISALHKS+RG++ DAA
Sbjct: 227 AAGRDTVDAAWLEISL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSNPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW RM++GG P Y++RRLVR A ED+GLADP A + AV+ LG PE + LA
Sbjct: 276 LYWFCRMIDGGADPKYLSRRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A A+K E + VP+HLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNQARKFAAEH--GSAPVPIHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSL 542
D+P +A + + P L
Sbjct: 394 HDEPHGYAAAEQYFPDGL 411
>gi|329944922|ref|ZP_08292949.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
str. F0386]
gi|328529733|gb|EGF56629.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
str. F0386]
Length = 476
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 201/434 (46%), Positives = 265/434 (61%), Gaps = 36/434 (8%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D + + P PL++R+RP ++DVVGQD LL+P + L V S RL SI+ WGPPG GK
Sbjct: 46 DGSGPVDDPSRPLADRLRPRALDDVVGQDQLLAPGAPLGRMVASGRLSSIVLWGPPGCGK 105
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + + ++ V SA SGV D+R A + R + + T+LFVDE+HRFN+
Sbjct: 106 TTVARLLADRTGLVFEQV--SATFSGVADLRKVFAAAARRR-EIGQGTLLFVDEIHRFNR 162
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +EDG++V +GATTENPSF L LLSRC+V+ L L + LL RA
Sbjct: 163 AQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVMVLRRLDEVALTELLARA--- 219
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+S+ G + + +A L S DGD R L +E + AA E ++E
Sbjct: 220 ------ESLTGRSLALTEEARTALLSMADGDGRYLLGMVE--QVLAAQGAGGPESLDIE- 270
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
G VA + YD++ EEHYNLISALHKSMRG+D DAA+YWL
Sbjct: 271 -----GLHAVVA------------SRAPLYDKSREEHYNLISALHKSMRGSDPDAALYWL 313
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARML GGE PLY+ARRLVRFASEDVG+ADP AL + + A LG PE + +AQ V
Sbjct: 314 ARMLGGGEDPLYVARRLVRFASEDVGMADPAALQTTLVAWDAYERLGSPEGELAIAQAVV 373
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-- 529
YLA APKSI++YR G A ++ RE+ P H+ NAPT+LMKE+GYG+GY Y PD
Sbjct: 374 YLATAPKSIAVYRGYGRAARLARETGSLMP--PAHILNAPTRLMKELGYGEGYEYDPDTA 431
Query: 530 DPSAKQSFLPPSLE 543
D + +LP +E
Sbjct: 432 DGFSGADYLPDGVE 445
>gi|367036110|ref|XP_003667337.1| hypothetical protein MYCTH_2313064 [Myceliophthora thermophila ATCC
42464]
gi|347014610|gb|AEO62092.1| hypothetical protein MYCTH_2313064 [Myceliophthora thermophila ATCC
42464]
Length = 585
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 268/432 (62%), Gaps = 29/432 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++D+ GQD L+ PN +LR+ + S+R+PS+I WG GTGKTT+A+ I
Sbjct: 160 APLAERMRPDTLDDIFGQD-LVGPNGVLRALIESDRVPSMILWGGSGTGKTTIARCIARR 218
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A ++GV + + +A + ++T++F DE+HRFNK QQD FL +
Sbjct: 219 VG--SRFIELNATSTGVAECKKLFAEAANELALTGRKTIIFCDEIHRFNKGQQDVFLKPV 276
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCR TL PL D++ +L RA++ G
Sbjct: 277 EAGTITLIGATTENPSFRVQAALLSRCRTFTLQPLTEDDLQRILVRALEQ-----EAEQG 331
Query: 302 GTRVE--VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G + ++ + + +L + DGDAR ALN LE+ A++ R P + D
Sbjct: 332 GIEISPLIDEELLRYLSAFADGDARTALNLLEM-ALSLTNRPP-----------DPDNPE 379
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
P +T + K A K L YDRAG++HY+ ISA HKS+RG+D DAA+Y+LARML+ GE
Sbjct: 380 P----LTKESIKAAL-TKTLVYDRAGDQHYDTISAFHKSVRGSDPDAALYYLARMLQSGE 434
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL++ARR+V ASEDVGLAD L A + Y A +GMPE + LA C LALAPKS
Sbjct: 435 DPLFVARRMVVIASEDVGLADNSMLPLATATYTATQQIGMPEARIPLAHCAVALALAPKS 494
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
YR L A ++E VP+HLRNAPT+LM+E+GYGK Y Y P+ D KQ +
Sbjct: 495 TRAYRGLNNALSALQEPGVAALPVPVHLRNAPTRLMREMGYGKEYKYPPNYRDGRVKQDY 554
Query: 538 LPPSLEGYKFLD 549
LP L G +FL+
Sbjct: 555 LPDRLLGRRFLE 566
>gi|383454207|ref|YP_005368196.1| recombination factor protein RarA [Corallococcus coralloides DSM
2259]
gi|380734080|gb|AFE10082.1| recombination factor protein RarA [Corallococcus coralloides DSM
2259]
Length = 445
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 205/440 (46%), Positives = 273/440 (62%), Gaps = 52/440 (11%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++++ +GQ+HL LR + S+++PS+I WGPPGTGKTTLA+ I S
Sbjct: 16 APLAERMRPTSLSEYLGQEHLTGEGRFLRRVLESDQVPSLILWGPPGTGKTTLAQLIARS 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F +SAV +GVKD+R+ V A+ + +RT+LF+DE+HRFNKSQQD+ LP +
Sbjct: 76 TGAA--FETMSAVLAGVKDIRETVARAQDRWKLNRQRTLLFIDEIHRFNKSQQDALLPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + LLSRCRV+TL L+ ++ +++ AV D + +G
Sbjct: 134 EKGTVTLIGATTENPSFEVNAALLSRCRVITLRGLEQEELIAVMRHAVAD-----PRGLG 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
G +V V+ A+EF+ GDAR AL ALE +A V K
Sbjct: 189 G-KVAVDDAALEFIADAAGGDARKALTALEAAAAYGRTAVDRKV---------------- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A+EA Q K L YD+ GEEHYN++SA KSMRG+D DAA+YW+ RMLE GE P
Sbjct: 232 --------AEEALQQKMLLYDKGGEEHYNVVSAFIKSMRGSDVDAALYWMTRMLEAGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++I RR+V FASEDVG ADP AL AV +A +G+PE + L Q V YLALAPKS +
Sbjct: 284 VFIFRRMVIFASEDVGNADPRALGVAVDALRAFQLMGLPEGTLPLTQAVTYLALAPKSNA 343
Query: 482 IYRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYI--------YTPDD 530
+ AA +RE+V EG VP+HLRNAPTKLMK +GYG GY Y P+D
Sbjct: 344 VI----AAYAAVREAV-TKEGALPVPMHLRNAPTKLMKSLGYGGGYKYPHNFEGNYVPED 398
Query: 531 --PSAKQS--FLPPSLEGYK 546
P A +S F P+ G++
Sbjct: 399 YLPEALRSRCFYTPTRNGFE 418
>gi|313107649|ref|ZP_07793832.1| putative ATPase associated with chromosome architecture
[Pseudomonas aeruginosa 39016]
gi|386066554|ref|YP_005981858.1| recombination factor protein [Pseudomonas aeruginosa NCGM2.S1]
gi|310880334|gb|EFQ38928.1| putative ATPase associated with chromosome architecture
[Pseudomonas aeruginosa 39016]
gi|348035113|dbj|BAK90473.1| recombination factor protein [Pseudomonas aeruginosa NCGM2.S1]
Length = 441
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 272/428 (63%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + ++ + L + DGD R LN LE +A A ED S+ SP +
Sbjct: 185 RKLRLPEESFQVLLAAADGDGRRLLNLLENAADLA--------------EDGSE-ISPEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQNLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE+VG ADP AL +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEVGNADPRALGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + ES G E VPLHLRNAPTKLMK +GYG+ Y Y D+P +A + + P
Sbjct: 343 YSAFNAAMRDVAES-GSRE-VPLHLRNAPTKLMKSLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE ++
Sbjct: 401 EDLEPRRY 408
>gi|15597809|ref|NP_251303.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO1]
gi|107102135|ref|ZP_01366053.1| hypothetical protein PaerPA_01003185 [Pseudomonas aeruginosa PACS2]
gi|218891226|ref|YP_002440092.1| recombination factor protein RarA [Pseudomonas aeruginosa LESB58]
gi|254235599|ref|ZP_04928922.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254241046|ref|ZP_04934368.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296388928|ref|ZP_06878403.1| recombination factor protein RarA [Pseudomonas aeruginosa PAb1]
gi|355642124|ref|ZP_09052579.1| replication-associated recombination protein A [Pseudomonas sp.
2_1_26]
gi|386058425|ref|YP_005974947.1| recombination factor protein RarA [Pseudomonas aeruginosa M18]
gi|392983717|ref|YP_006482304.1| recombination factor protein RarA [Pseudomonas aeruginosa DK2]
gi|416853818|ref|ZP_11910436.1| recombination factor protein RarA [Pseudomonas aeruginosa 138244]
gi|416872563|ref|ZP_11916767.1| recombination factor protein RarA [Pseudomonas aeruginosa 152504]
gi|416872704|ref|ZP_11916884.1| recombination factor protein RarA [Pseudomonas aeruginosa 152504]
gi|416872983|ref|ZP_11917126.1| recombination factor protein RarA [Pseudomonas aeruginosa 152504]
gi|418585156|ref|ZP_13149211.1| recombination factor protein RarA [Pseudomonas aeruginosa MPAO1/P1]
gi|418590619|ref|ZP_13154527.1| recombination factor protein RarA [Pseudomonas aeruginosa MPAO1/P2]
gi|419753198|ref|ZP_14279602.1| recombination factor protein RarA [Pseudomonas aeruginosa
PADK2_CF510]
gi|420139611|ref|ZP_14647436.1| recombination factor protein RarA [Pseudomonas aeruginosa CIG1]
gi|421153972|ref|ZP_15613502.1| recombination factor protein RarA [Pseudomonas aeruginosa ATCC
14886]
gi|421160205|ref|ZP_15619291.1| recombination factor protein RarA [Pseudomonas aeruginosa ATCC
25324]
gi|421167324|ref|ZP_15625522.1| recombination factor protein RarA [Pseudomonas aeruginosa ATCC
700888]
gi|421180235|ref|ZP_15637802.1| recombination factor protein RarA [Pseudomonas aeruginosa E2]
gi|421517125|ref|ZP_15963799.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO579]
gi|424941878|ref|ZP_18357641.1| putative ATPase associated with chromosome architecture
[Pseudomonas aeruginosa NCMG1179]
gi|451984226|ref|ZP_21932483.1| Holliday junction DNA helicase [Pseudomonas aeruginosa 18A]
gi|9948679|gb|AAG06001.1|AE004690_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|126167530|gb|EAZ53041.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126194424|gb|EAZ58487.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218771451|emb|CAW27218.1| putative ATPase associated with chromosome architecture
[Pseudomonas aeruginosa LESB58]
gi|334844801|gb|EGM23371.1| recombination factor protein RarA [Pseudomonas aeruginosa 138244]
gi|334845468|gb|EGM24030.1| recombination factor protein RarA [Pseudomonas aeruginosa 152504]
gi|334845691|gb|EGM24251.1| recombination factor protein RarA [Pseudomonas aeruginosa 152504]
gi|334845801|gb|EGM24360.1| recombination factor protein RarA [Pseudomonas aeruginosa 152504]
gi|346058324|dbj|GAA18207.1| putative ATPase associated with chromosome architecture
[Pseudomonas aeruginosa NCMG1179]
gi|347304731|gb|AEO74845.1| recombination factor protein RarA [Pseudomonas aeruginosa M18]
gi|354830426|gb|EHF14470.1| replication-associated recombination protein A [Pseudomonas sp.
2_1_26]
gi|375044885|gb|EHS37477.1| recombination factor protein RarA [Pseudomonas aeruginosa MPAO1/P1]
gi|375050576|gb|EHS43056.1| recombination factor protein RarA [Pseudomonas aeruginosa MPAO1/P2]
gi|384400320|gb|EIE46679.1| recombination factor protein RarA [Pseudomonas aeruginosa
PADK2_CF510]
gi|392319222|gb|AFM64602.1| recombination factor protein RarA [Pseudomonas aeruginosa DK2]
gi|403247604|gb|EJY61235.1| recombination factor protein RarA [Pseudomonas aeruginosa CIG1]
gi|404346607|gb|EJZ72956.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO579]
gi|404522832|gb|EKA33296.1| recombination factor protein RarA [Pseudomonas aeruginosa ATCC
14886]
gi|404535103|gb|EKA44813.1| recombination factor protein RarA [Pseudomonas aeruginosa ATCC
700888]
gi|404545225|gb|EKA54328.1| recombination factor protein RarA [Pseudomonas aeruginosa ATCC
25324]
gi|404545915|gb|EKA54984.1| recombination factor protein RarA [Pseudomonas aeruginosa E2]
gi|451758155|emb|CCQ85006.1| Holliday junction DNA helicase [Pseudomonas aeruginosa 18A]
gi|453045643|gb|EME93362.1| recombination factor protein RarA [Pseudomonas aeruginosa
PA21_ST175]
Length = 441
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 272/428 (63%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + ++ + L + DGD R LN LE +A A ED S+ SP +
Sbjct: 185 RKLRLPEESFQVLLAAADGDGRRLLNLLENAADLA--------------EDGSE-ISPEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQNLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE+VG ADP AL +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEVGNADPRALGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + ES G E VPLHLRNAPTKLMK +GYG+ Y Y D+P +A + + P
Sbjct: 343 YSAFNAAMRDVAES-GSRE-VPLHLRNAPTKLMKSLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE ++
Sbjct: 401 EDLEPRRY 408
>gi|116050600|ref|YP_790581.1| recombination factor protein RarA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421174204|ref|ZP_15631936.1| recombination factor protein RarA [Pseudomonas aeruginosa CI27]
gi|115585821|gb|ABJ11836.1| putative ATPase associated with chromosome architecture
[Pseudomonas aeruginosa UCBPP-PA14]
gi|404534679|gb|EKA44406.1| recombination factor protein RarA [Pseudomonas aeruginosa CI27]
Length = 441
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 272/428 (63%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + ++ + L + DGD R LN LE +A A ED S+ SP +
Sbjct: 185 RKLSLPEESFQVLLAAADGDGRRLLNLLENAADLA--------------EDGSE-ISPEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQNLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE+VG ADP AL +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEVGNADPRALGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + ES G E VPLHLRNAPTKLMK +GYG+ Y Y D+P +A + + P
Sbjct: 343 YSAFNAAMRDVAES-GSRE-VPLHLRNAPTKLMKSLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE ++
Sbjct: 401 EDLEPRRY 408
>gi|358061925|ref|ZP_09148575.1| hypothetical protein HMPREF9473_00637 [Clostridium hathewayi
WAL-18680]
gi|356699765|gb|EHI61275.1| hypothetical protein HMPREF9473_00637 [Clostridium hathewayi
WAL-18680]
Length = 438
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 270/428 (63%), Gaps = 28/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP +++VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I N+
Sbjct: 16 SPLASRLRPTTLDEVVGQKHIVGKDKLLYRAIQADQLGSIIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+++ ++A +G KD+ + V++A+ K+T+LFVDE+HRFNKSQQD LP +
Sbjct: 76 TKANFR--QINATVAGKKDMEEVVKEAKDALGMYGKKTILFVDEIHRFNKSQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR R+ L L+ D++ LL RAV D G+ G
Sbjct: 134 EDGTLILIGATTENPYFEVNGALISRSRIFELKALEKEDIKELLHRAVYDREKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
E+ DA+EFL +GDAR ALNA+E+ +T E DG
Sbjct: 190 SYNAEIEDDALEFLADVSNGDARAALNAIELGILTT--------------ERGEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ L+ A+E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LARML GE
Sbjct: 235 ---INLEVAQECIQKRVVRYDKDGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ A+EDVG+ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICAAEDVGIADPMALTVAVSASQAVERIGMPEAQIILSQAVLYVATAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA ++ G+ VP+HL++ K +++G+G GY+Y D P+ KQ +LP
Sbjct: 352 AVMAVSAAMDAVKS--GRTMPVPVHLQDRHYKGAEKLGHGAGYLYAHDYPNHYVKQQYLP 409
Query: 540 PSLEGYKF 547
+EG F
Sbjct: 410 DGMEGVTF 417
>gi|416892285|ref|ZP_11923671.1| recombination factor protein RarA [Aggregatibacter aphrophilus ATCC
33389]
gi|347814931|gb|EGY31576.1| recombination factor protein RarA [Aggregatibacter aphrophilus ATCC
33389]
Length = 440
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 270/428 (63%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIEKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSTQEIERVLQQAIDDQENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+++ + + L +GDAR+ALN LE+ AA E K + D +
Sbjct: 188 VRLDLQENLLSLLAEYVNGDARLALNCLEMMVDMAA------ESKNGKILDRT------- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 235 -LLT-----EVLGERQARFDKQGDRFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT LMK++G+G Y Y D+P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTNLMKDLGFGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|422337825|ref|ZP_16418794.1| replication-associated recombination protein A [Aggregatibacter
aphrophilus F0387]
gi|353344831|gb|EHB89131.1| replication-associated recombination protein A [Aggregatibacter
aphrophilus F0387]
Length = 446
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 269/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIEKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSTQEIERVLQQAIDDQENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+++ + + L +GDAR+ALN LE+ AA E K + D +
Sbjct: 188 VRLDLQENLLSLLAEYVNGDARLALNCLEMMVDMAA------ESKNGKILDRT------- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 235 -LLT-----EVLGERQARFDKQGDRFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT LMK+ G+G Y Y D+P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTNLMKDFGFGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|322700463|gb|EFY92218.1| DNA replication ATPase [Metarhizium acridum CQMa 102]
Length = 1289
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 267/430 (62%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQD L+ PN +LR + +NR+PS+I WG GTGKTT+A+ I +
Sbjct: 875 APLAERMRPTTLDDVCGQD-LVGPNGVLRGLIETNRVPSMILWGASGTGKTTIARCIAH- 932
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV L+A ++GV + + ++A + +RT++F DE+HRFNK+QQD FL +
Sbjct: 933 -MVGSRFVELNATSTGVSECKKLFQEAASELSLTGRRTIIFCDEIHRFNKAQQDVFLKPV 991
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + + LLSRCR TL L D+ +LKRA ++V
Sbjct: 992 EAGTVTLIGATTENPSFKVASALLSRCRTFTLRSLTVEDIMGILKRA-----RAAEEAVY 1046
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + + +L DGDAR ALN LE+ A++ R +G
Sbjct: 1047 PPTPLIDEEMMGYLARFSDGDARTALNLLEV-ALSLTTR---------------EG---- 1086
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T +D K + K L YDR G++HY+ ISA HKS+RGNDADAA+Y+LARML+ GE P
Sbjct: 1087 ---ITKEDIKSSL-TKTLVYDRGGDQHYDSISAFHKSVRGNDADAALYYLARMLQSGEDP 1142
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A + + A +GMPE + LA C L+LAPKS
Sbjct: 1143 LFIARRMVVIASEDVGLADNTLLPLATATFTATQQIGMPEARIPLAHCAIALSLAPKSTR 1202
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YRAL A +RE + VPLHLRNAPT+LM+++GYG Y Y P+ D +Q++ P
Sbjct: 1203 AYRALNNAYAALREPGVASLPVPLHLRNAPTRLMRDMGYGAEYKYPPNYRDGKVRQTYFP 1262
Query: 540 PSLEGYKFLD 549
L G +FL+
Sbjct: 1263 DELIGRRFLE 1272
>gi|346224699|ref|ZP_08845841.1| recombination factor protein RarA [Anaerophaga thermohalophila DSM
12881]
Length = 425
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 194/439 (44%), Positives = 271/439 (61%), Gaps = 34/439 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP ++ +GQ HL+ S+L V S R+ SII WGPPG GKTTLA+ I +
Sbjct: 4 YPPLAERMRPRTLDQYIGQKHLVGEGSILYQMVTSGRVSSIILWGPPGVGKTTLARIIAH 63
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSAV+SGVKDVR+A+E A+K R ++ +LF+DE+HRF+KSQQDS L
Sbjct: 64 QL--ERPFFVLSAVSSGVKDVREAIEKAKKSRFFNSASPILFIDEIHRFSKSQQDSLLGA 121
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G++ IGATTENPSF +I+PLLSRC+V L PL+ D+ +L R + +
Sbjct: 122 VEEGTVTLIGATTENPSFEVISPLLSRCQVYVLKPLEKEDLMVLFDRICTE-----DPVL 176
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++E+ D F S GDAR LN +E+ + + DE
Sbjct: 177 KNRKIELKEDDALFRFSG--GDARKFLNIIELISNSFT--------------DEE----- 215
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T ++ Q YD+ GE HY++ISA KS+RG+D DAA+YWLARM+EGGE
Sbjct: 216 -TIVITNENVTRNLQQNPAQYDKNGEIHYDIISAFIKSIRGSDPDAAVYWLARMVEGGED 274
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRL+ ASED+GLA+P AL A + ++A + +G PE +IL++ YLA +PKS
Sbjct: 275 PKFIARRLIISASEDIGLANPNALLLATNAFEAINMIGWPEARIILSEVTIYLATSPKSN 334
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+ AQ+V+R++ N VPLHLRNAPTKLMK++ YGK Y Y D D Q +L
Sbjct: 335 SAYMAINNAQEVVRKT--GNLPVPLHLRNAPTKLMKQLDYGKEYKYAHDFKDNFVIQDYL 392
Query: 539 PPSLEGYKFLDWPKSNTTD 557
P ++ K +P+ N +
Sbjct: 393 PDQIKDTKLF-FPQDNQQE 410
>gi|152987484|ref|YP_001347959.1| recombination factor protein RarA [Pseudomonas aeruginosa PA7]
gi|150962642|gb|ABR84667.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 441
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 271/428 (63%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDETALRKLVGRALNE-----EKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ + L + DGD R LN LE +A A ED S+ SP +
Sbjct: 185 RNLSLPEESFQVLLAAADGDGRRLLNLLENAADLA--------------EDGSE-ISPEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQNLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE+VG ADP AL +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEVGNADPRALGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + ES G E VPLHLRNAPTKLMK +GYG+ Y Y D+P +A + + P
Sbjct: 343 YSAFNAAMRDVAES-GSRE-VPLHLRNAPTKLMKSLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE ++
Sbjct: 401 EDLEPRRY 408
>gi|226311479|ref|YP_002771373.1| hypothetical protein BBR47_18920 [Brevibacillus brevis NBRC 100599]
gi|226094427|dbj|BAH42869.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 452
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 276/438 (63%), Gaps = 30/438 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I DV+GQ H+L+P LLR A+ ++++ S+IF+GPPGTGKTTLAK I +
Sbjct: 19 PLAARMRPQTIQDVIGQSHILAPGKLLRRAIEADQVSSVIFYGPPGTGKTTLAKVIARTT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F L+AVT+GV D+R V+ A++ V ++RT LFVDE+HRFNKSQQD+ LP +E
Sbjct: 79 RT--HFSELNAVTAGVADIRKVVDAAKERLVMDSQRTTLFVDEIHRFNKSQQDALLPYVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+I+ IGATTENP F + LLSR +V +L L +++ ++ RA+ D NGL++
Sbjct: 137 EGTIILIGATTENPFFEVNPALLSRSQVFSLQSLSHEELKQVMDRALTDEENGLAELF-- 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V V +A E L +GDAR LNALE++ T + +DG
Sbjct: 195 --VTVEPEAAEHLVQYAEGDARRLLNALELAVTTT--------------QPGADGR---- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VTLD A E+ Q + + YD++G+ HY+ ISA KS+RG+D DAA+YWLARM++ GE P
Sbjct: 235 ITVTLDVAVESIQRRAVRYDKSGDNHYDTISAFIKSIRGSDPDAALYWLARMIDAGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+I+RRLV ASED+G ADP A+ A+SC+QA +GMPE + LAQ YLA APKS +
Sbjct: 295 FISRRLVISASEDIGNADPQAITVAMSCFQAVELVGMPEGRIPLAQATTYLATAPKSNAA 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPP 540
Y + +A IR ++ VP+HLR++ K ++G+G+GY+Y + P Q +LP
Sbjct: 355 YNGINSALDRIR--TDGHKQVPIHLRDSAYKGAAKLGHGQGYLYPHNYPYGYVPQQYLPD 412
Query: 541 SLEGYKFLDWPKSNTTDK 558
+ Y F PK + ++
Sbjct: 413 GVN-YSFYQ-PKDHGYER 428
>gi|251792120|ref|YP_003006840.1| recombination factor protein RarA [Aggregatibacter aphrophilus
NJ8700]
gi|247533507|gb|ACS96753.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
aphrophilus NJ8700]
Length = 446
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R A+E A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIRKAIEKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSTQEIERVLQQAIDDQENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+++ + + L +GDAR+ALN LE+ AA + +G
Sbjct: 188 VRLDLQENLLSLLAEYVNGDARLALNCLEMMVDMAA--------------ESKNGKILDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLLT-----EVLGERQARFDKQGDRFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT LMK++G+G Y Y D+P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTNLMKDLGFGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|170726827|ref|YP_001760853.1| recombination factor protein RarA [Shewanella woodyi ATCC 51908]
gi|169812174|gb|ACA86758.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908]
Length = 443
Score = 357 bits (916), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 194/439 (44%), Positives = 276/439 (62%), Gaps = 34/439 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++ +GQ HLL LR A+ + R S++FWGPPGTGKTTLA+ + N
Sbjct: 14 PLAARMRPEELSQYIGQSHLLGEGKPLRKALEAGRAHSMMFWGPPGTGKTTLAELVANYA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ +++ +A+ DV GL K
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKKLTNDEIVLIVNQALLDVERGLGKR--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + L + CDGDAR ALN +E+ + A DG S
Sbjct: 189 -KLTIPDAVANKLANVCDGDARKALNLIELMSDMVA-----------------DGESFTE 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ E + +D+ G+++Y+LISA+HKS+RG+ DAA+YW RMLEGG PL
Sbjct: 231 EMIV-----EVAGQQLAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+ ASED+G ADP+A+ A++ ++ H +G E +AQ + YLA APKS ++
Sbjct: 286 YIARRLLAIASEDIGNADPVAMTVAINAWECFHRVGPSEGERAIAQAIIYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+++ RE+ GQ+ VP HLRNAPT+LMK+IG+G+GY Y D+P++ S + P
Sbjct: 346 YTAFKAARQLARET-GQD-AVPEHLRNAPTQLMKDIGFGEGYRYAHDEPNSYASGECYFP 403
Query: 540 PSLEGYKFLDWPKSNTTDK 558
L G +F +P + +K
Sbjct: 404 ERLAGSRFY-YPTEHGFEK 421
>gi|400292906|ref|ZP_10794807.1| MgsA AAA+ ATPase, C-terminal domain protein [Actinomyces naeslundii
str. Howell 279]
gi|399901978|gb|EJN84832.1| MgsA AAA+ ATPase, C-terminal domain protein [Actinomyces naeslundii
str. Howell 279]
Length = 438
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/434 (45%), Positives = 267/434 (61%), Gaps = 36/434 (8%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D + + P PL++R+RP ++DVVGQD LL+ ++ L V S RL SII WGPPG GK
Sbjct: 8 DGSGLVDDPARPLADRLRPRALDDVVGQDQLLATDAPLGRMVGSGRLSSIILWGPPGCGK 67
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + + ++ V SA SGV D+R A + R + + T+LFVDE+HRFN+
Sbjct: 68 TTVARLLADRTGLVFEQV--SATFSGVADLRKVFAAAARRR-EIGQGTLLFVDEIHRFNR 124
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +EDG++V +GATTENPSF L LLSRC+V+ L L + LL RA
Sbjct: 125 AQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVMVLRRLDEAALTELLARA--- 181
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+S+ G + + +A L S DGD R L +E + AA +E + E+
Sbjct: 182 ------ESLTGRALALTEEARTALLSMADGDGRYLLGMVE--QVLAA-----QEAGDPER 228
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
D ++ + + YD++ EEHYNLISALHKSMRG+D DAA+YWL
Sbjct: 229 LD-------------VEGLRAVVSSRAPLYDKSREEHYNLISALHKSMRGSDPDAALYWL 275
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARML GGE PLY+ RRLVRFASEDVG+ADP AL ++ + A LG PE + +AQ V
Sbjct: 276 ARMLGGGEDPLYVVRRLVRFASEDVGMADPAALQMTLAAWDAYERLGSPEGELAIAQAVV 335
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-- 529
YLA APKSI++YR G A ++ RE+ P H+ NAPT+LMKE+GYG+GY Y PD
Sbjct: 336 YLATAPKSIAVYRGYGRAARLARETGSLMP--PAHILNAPTRLMKELGYGEGYEYDPDTT 393
Query: 530 DPSAKQSFLPPSLE 543
D + +LP +E
Sbjct: 394 DGFSGADYLPDGVE 407
>gi|398813774|ref|ZP_10572466.1| AAA ATPase [Brevibacillus sp. BC25]
gi|398038074|gb|EJL31247.1| AAA ATPase [Brevibacillus sp. BC25]
Length = 452
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 277/438 (63%), Gaps = 30/438 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +I DV+GQ H+L+P LLR A+ ++++ S+IF+GPPGTGKTTLAK I +
Sbjct: 19 PLAARMRPQSIQDVIGQSHILAPGMLLRRAIEADQVSSVIFYGPPGTGKTTLAKVIARTT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F L+AVT+GV D+R V+ A++ V ++RT LFVDE+HRFNKSQQD+ LP +E
Sbjct: 79 RT--HFSELNAVTAGVADIRKVVDAAKERLVMDSQRTTLFVDEIHRFNKSQQDALLPYVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+I+ IGATTENP F + LLSR +V +L L +++ ++ RA+ D NGL++
Sbjct: 137 EGTIILIGATTENPFFEVNPALLSRSQVFSLQSLSHEELKQVMDRALTDEENGLAELF-- 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V V +A E L +GDAR LNALE++ T + +DG
Sbjct: 195 --VSVEPEAAEHLIQYAEGDARRLLNALELAVTTT--------------QPGADGR---- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VTLD A E+ Q + + YD++G+ HY+ ISA KS+RG+D DAA+YWLARM++ GE P
Sbjct: 235 ITVTLDVAVESIQRRAVRYDKSGDNHYDTISAFIKSIRGSDPDAALYWLARMIDAGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+I+RRLV ASED+G ADP A+ A+SC+QA +GMPE + LAQ YLA APKS +
Sbjct: 295 FISRRLVISASEDIGNADPQAITVAMSCFQAVELVGMPEGRIPLAQATTYLATAPKSNAA 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPP 540
Y + +A IR ++ VP+HLR++ K ++G+G+GY+Y + P Q +LP
Sbjct: 355 YNGINSALDRIR--TDGHKQVPIHLRDSAYKGAAKLGHGQGYLYPHNYPYGYVPQQYLPD 412
Query: 541 SLEGYKFLDWPKSNTTDK 558
+ Y F PK + ++
Sbjct: 413 GVN-YSFYQ-PKDHGYER 428
>gi|421482566|ref|ZP_15930146.1| recombination factor protein RarA [Achromobacter piechaudii HLE]
gi|400198877|gb|EJO31833.1| recombination factor protein RarA [Achromobacter piechaudii HLE]
Length = 446
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 272/439 (61%), Gaps = 33/439 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP ++DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+R+AV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMAD--GFDAQFIAISAVLGGVKDIREAVTVA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L P +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSPEELQQLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
VD +N+GL + G + V DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 VDTLNDGLEE---GEVIRVEADAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D ++L ++L +D+ G+ Y+ ISALHKS+RG++ DAA
Sbjct: 227 SAGRDSVDAAWLEISL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSNPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW RM++GG P Y++RRLVR A ED+GLADP A + AV+ LG PE + LA
Sbjct: 276 LYWFCRMIDGGADPKYLSRRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A A++ E + VP+HLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNQARQFAAEH--GSAPVPIHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSLE 543
D+P +A + + P L+
Sbjct: 394 HDEPHGYAAGEQYFPDGLK 412
>gi|315633927|ref|ZP_07889216.1| replication-associated recombination protein A [Aggregatibacter
segnis ATCC 33393]
gi|315477177|gb|EFU67920.1| replication-associated recombination protein A [Aggregatibacter
segnis ATCC 33393]
Length = 446
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 195/428 (45%), Positives = 270/428 (63%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QAEVERI--SAVTSGIKEIREAIEKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSTQEIERVLQQAIDDPENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+++ + + L +GDAR+ALN LE+ AA E K + D +
Sbjct: 188 VRLDLQANLLSLLAEYVNGDARLALNCLEMMVDMAA------ESKNGKILDRT------- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 235 -LLT-----EVLGERQARFDKQGDRFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YIARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT LMK++G+G Y Y D+P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTNLMKDLGFGSEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PELKDAQF 414
>gi|156538268|ref|XP_001602992.1| PREDICTED: ATPase WRNIP1-like [Nasonia vitripennis]
Length = 522
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 184/404 (45%), Positives = 258/404 (63%), Gaps = 26/404 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E+MRP +I VGQ H+L P ++L + +P+II WGPPG GKT+LA I N+
Sbjct: 110 PLAEKMRPNSIMSYVGQKHVLGPETMLYQLLSKTEIPNIILWGPPGCGKTSLANVIANTC 169
Query: 183 ----AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
Y++V LSA SG+ DV+DA+ A +K +RTV+F+DE+HRFNK+QQD+FL
Sbjct: 170 QHCPGGKYRYVKLSAAMSGISDVKDAITIASN-ELKFGRRTVMFMDEIHRFNKTQQDTFL 228
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDV-EILLKR------AVDD 291
P IE G+I+ IGATTENPSF L LLSRCRV+ L L ++ EIL++ AV D
Sbjct: 229 PHIESGTIILIGATTENPSFSLNAALLSRCRVIVLEKLTIENLTEILIRAIKAAGGAVHD 288
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+ S+ + ++ + +++L DGDAR+AL LE++ + +VP E
Sbjct: 289 FEKPPNASIN-NKFFIDRETVKWLAETSDGDARIALGGLELAIHS---KVPSSEGSSSSG 344
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
+ ++LDD K++ + H+ YD+ G++HY++ISALHKS+R +D +AA+YW+
Sbjct: 345 ----------LNFISLDDVKDSLKKTHMLYDKKGDQHYDMISALHKSVRASDDNAALYWI 394
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RM+ GGE P+YI RRLVR A+ED+GL DP AL AV Q+C LGMPEC+V+LAQC
Sbjct: 395 TRMMAGGEDPVYIGRRLVRMATEDIGLEDPKALGVAVHTMQSCKMLGMPECDVLLAQCAI 454
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLM 515
YLA APKS + +L AAQ+V+ VPLHLRN PT ++
Sbjct: 455 YLARAPKSRLMEDSLRAAQRVVANYKDAQLPVPLHLRNIPTSIL 498
>gi|347534274|ref|YP_004840944.1| Replication-associated recombination protein A [Lactobacillus
sanfranciscensis TMW 1.1304]
gi|345504330|gb|AEN99012.1| Replication-associated recombination protein A [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 443
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 275/429 (64%), Gaps = 31/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RPVN+++ +GQ ++ ++LR+ + ++++ S+I WGPPGTGKTTLA+ I +
Sbjct: 17 PLASRVRPVNLDEFIGQQQIIGKGTILRNLIENDQIASLILWGPPGTGKTTLAQIIAHET 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F+ +SAV + + VR +++A + + K +T++FVDE+HRFNK+QQDSFLP +E
Sbjct: 77 DAN--FISVSAVGTSITKVRKIMQEAAENK-KMGLKTIVFVDEIHRFNKAQQDSFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+GSI+ IGATTENPSF + + LLSR +V L L ++ LLK+A+ + G
Sbjct: 134 NGSIILIGATTENPSFEINSALLSRSKVFVLKSLTATEIVQLLKQAIHS-----PRGYGD 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V+++ D + + +GDAR ALN LE+ AV ++ K+V+
Sbjct: 189 LEVKISEDNLMAIAEFANGDARSALNTLEM-----AVENGKQDGKKVD------------ 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL+D ++ K L YD+ GEEHYN+ISA+HKS+R +D D+A+YW++RML+GGE P+
Sbjct: 232 --ITLEDLQQLITRKSLLYDKKGEEHYNIISAVHKSLRNSDVDSAVYWVSRMLDGGEDPM 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+I RRLVRFASEDVGLADP ALN ++ +A +GMP+C+ + + YLALAPKS +I
Sbjct: 290 FIMRRLVRFASEDVGLADPQALNVCINATEAIKLIGMPDCDDTIIEATVYLALAPKSNAI 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT--PDDPSAKQSFLPP 540
+A+ A +++ N VPL +RNAPTKLMK + YGKGY D PP
Sbjct: 350 DKAVQKAAADVKKY--GNLPVPLQIRNAPTKLMKNLNYGKGYKMAQREKDKLTTMKTNPP 407
Query: 541 SLEGYKFLD 549
+ G+++ +
Sbjct: 408 EITGHEYYE 416
>gi|408374988|ref|ZP_11172667.1| recombination factor protein RarA [Alcanivorax hongdengensis
A-11-3]
gi|407765156|gb|EKF73614.1| recombination factor protein RarA [Alcanivorax hongdengensis
A-11-3]
Length = 441
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 202/424 (47%), Positives = 267/424 (62%), Gaps = 39/424 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP +++D VGQ HL+ LR A +L S+I WGPPGTGKTTLA ++ +
Sbjct: 15 PLAARLRPTSLDDYVGQQHLVGEGKPLRQAAARGQLHSMILWGPPGTGKTTLA--LILAQ 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
AV +F+ LSAV SGVKD+R AVE A K R+ +RTVLFVDEVHRFNK+QQD+FLP +E
Sbjct: 73 AVDAQFITLSAVLSGVKDIRAAVEQA-KARLGQGRRTVLFVDEVHRFNKAQQDAFLPHVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-NGLSKSVG 301
+G+I FIGATTENPSF L LLSR RV L L D+ LL RA+ + + +GL+
Sbjct: 132 EGTITFIGATTENPSFELNNALLSRARVYRLRSLTSEDLASLLDRALKEPSLDGLT---- 187
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ DA + L + DGDAR LN LE++A A PV + + + +
Sbjct: 188 -----LDDDARQLLLNYADGDARRLLNMLEVAADLADDAQPVIDAELMAE---------- 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L DA F D+ G+ Y+ ISALHKS+RG+D DAA+YW ARML+GG
Sbjct: 233 ----VLRDAVRRF-------DKGGDLFYDQISALHKSVRGSDPDAALYWFARMLDGGCDA 281
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+VR ASED+G ADP AL + + LG PE + +AQ +AYLA+APKS +
Sbjct: 282 LYIARRVVRMASEDIGNADPRALTLCLQAWDVQERLGSPEGELAIAQAIAYLAVAPKSNA 341
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFL 538
+Y+A A+ ++RE + VPLHLRNAPT+LMK+ G+G Y Y D P A +++
Sbjct: 342 VYKAYNQARALVREK--PTDEVPLHLRNAPTQLMKDEGFGAEYHYAHDFPEAFVPGENYF 399
Query: 539 PPSL 542
P SL
Sbjct: 400 PVSL 403
>gi|390952477|ref|YP_006416236.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390429046|gb|AFL76111.1| AAA ATPase [Thiocystis violascens DSM 198]
Length = 435
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 200/431 (46%), Positives = 267/431 (61%), Gaps = 34/431 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRPV + + VGQ HLL+P LR A+ S RL S+I WGPPGTGKTTLA+ I
Sbjct: 8 APLADRMRPVTLEEFVGQTHLLAPGKPLRRAIESGRLHSMILWGPPGTGKTTLARLIARQ 67
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ LSAV +GVK++R+AV +A+ +R + T+LF+DEVHRFNK QQD+FLP +
Sbjct: 68 SGA--HFLNLSAVLAGVKEIREAVAEAQTVRRLEQRGTLLFIDEVHRFNKGQQDAFLPHV 125
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E+G++ FIGATTENPSF L LLSR RV L L D+ +L RA+ D +G G
Sbjct: 126 ENGTLTFIGATTENPSFSLNNALLSRARVYVLKSLTVGDIRHVLTRALADPTHGF----G 181
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + +A L DGDAR ALN LE+ AV++ E E +
Sbjct: 182 EQHLVLPDEAARLLAQTADGDARRALNLLEL-----AVQLTTDETIE----------TAT 226
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VA V D + +DR G+ Y+ ISALHK++RG+ DAA+YWLARM++GG P
Sbjct: 227 VAEVVADPIRR--------FDRGGDIFYDQISALHKAVRGSAPDAALYWLARMIDGGCDP 278
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARR+ R ASED+G ADP AL+ A++ + A LG PE + LAQ V YLA A KS +
Sbjct: 279 LYIARRVARMASEDIGNADPRALDLAMNAWNALERLGSPEGELALAQAVVYLACAAKSNA 338
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A AA R S + VP+HLRNAPTKL+KE+G+G+ Y Y D+P +A + +
Sbjct: 339 VYTAWKAALADARGSGSLD--VPIHLRNAPTKLLKELGHGRAYRYAHDEPEAYAAGEVYF 396
Query: 539 PPSLEGYKFLD 549
P L ++ +
Sbjct: 397 PEELGERRYYE 407
>gi|444910078|ref|ZP_21230266.1| ATPase, AAA family [Cystobacter fuscus DSM 2262]
gi|444719676|gb|ELW60468.1| ATPase, AAA family [Cystobacter fuscus DSM 2262]
Length = 443
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/434 (47%), Positives = 267/434 (61%), Gaps = 48/434 (11%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP + + VGQ+HL LR A+ +++PSII WGPPGTGKTTLA I +S
Sbjct: 16 APLAERMRPTRLEEFVGQEHLTGEGRFLRRAIQQDQVPSIILWGPPGTGKTTLAHLIAHS 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAV SGVK++R+ V A++ +RT+LFVDE+HRFNK QQD+ LP +
Sbjct: 76 TGAA--FESLSAVLSGVKEIRETVARAQERWKMRRQRTLLFVDEIHRFNKGQQDALLPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF L LLSR RV+TL L+ ++ LL+RAV+ GL+
Sbjct: 134 EKGTVTLIGATTENPSFELNAALLSRARVVTLRGLEEEELVALLRRAVES-PRGLAG--- 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+V V+ + + FL GDAR AL ALE +A RV D++
Sbjct: 190 --KVRVDDETLTFLVQASGGDARKALTALEAAAAHGGTRV-----------DKA------ 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
A+EA Q K L YD+AGEEHYN++SA KSMRG+D DAA+YW+ RMLE GE P
Sbjct: 231 -------IAEEALQHKALLYDKAGEEHYNVVSAFIKSMRGSDVDAALYWMTRMLEAGEDP 283
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++I RR+V FASEDVG ADP AL AV +A +G+PE + L Q V YLALAPKS +
Sbjct: 284 VFIFRRMVIFASEDVGNADPRALGVAVDALRAFELMGLPEGTLPLTQAVTYLALAPKSNA 343
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI--------YTPDDPSA 533
+ A A + + E G VP HLRNAPTKLMK +GYG GY Y P+D
Sbjct: 344 VISAYAAVRAAVTE--GGALPVPAHLRNAPTKLMKSLGYGAGYKYPHNFEGNYVPED--- 398
Query: 534 KQSFLPPSLEGYKF 547
+LP +LEG +F
Sbjct: 399 ---YLPSALEGRRF 409
>gi|116624471|ref|YP_826627.1| recombination factor protein RarA [Candidatus Solibacter usitatus
Ellin6076]
gi|116227633|gb|ABJ86342.1| Recombination protein MgsA [Candidatus Solibacter usitatus
Ellin6076]
Length = 434
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 264/427 (61%), Gaps = 41/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++++ +GQDH+L P LR + + L SII WGPPG GKTTLA I
Sbjct: 17 PLADRMRPTSLDEYIGQDHILGPGKPLRRQIERDELTSIILWGPPGVGKTTLAHLIAK-- 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ SAV SG+K+++ + DA KLR + +RT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 75 VTKCEFIPFSAVLSGMKEIKAVMVDAEKLR-RLGRRTILFVDEIHRFNKAQQDAFLPYVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF +I LLSR RV L ++ +LKRA+ ++
Sbjct: 134 RGDIILIGATTENPSFEVIAALLSRSRVYALRAFTVPEIVTMLKRALPVLH--------- 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + D +E + +GD R A N LE +A ++
Sbjct: 185 --LQASDDLLEQIGIYSNGDGRQAYNTLEAAAAASSG----------------------- 219
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + ++A Q K L YD+ GEEH+NLISALHKS+R +D DAA+YWL RMLE GE +
Sbjct: 220 GELTEEAVQDAMQRKVLLYDKGGEEHFNLISALHKSVRSSDVDAALYWLTRMLEAGEDRM 279
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVR A ED+ LADP AL Q ++ QA HFLG+PE ++ L Q YL++APKS +
Sbjct: 280 YIARRLVRMAIEDISLADPRALEQCIAAMQAVHFLGIPEGDLALGQAAIYLSIAPKSDAA 339
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
YRA+GA ++ + +++ E VP+ LRNAPTK MK+ GYG+GY + D LP
Sbjct: 340 YRAMGAVKEDVEKTIA--EPVPMRLRNAPTKAMKQWGYGEGYQHAHQFADAVPGMECLPD 397
Query: 541 SLEGYKF 547
SL G ++
Sbjct: 398 SLAGTQY 404
>gi|440750120|ref|ZP_20929364.1| ATPase, AAA family [Mariniradius saccharolyticus AK6]
gi|436481161|gb|ELP37342.1| ATPase, AAA family [Mariniradius saccharolyticus AK6]
Length = 437
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 203/458 (44%), Positives = 271/458 (59%), Gaps = 44/458 (9%)
Query: 102 FKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSI 161
F LK+ H + ST + PL+ERMRP + D++GQ+HL SPNS L A+ + +PS+
Sbjct: 5 FVPLKSPHQLIST----MQQTPLAERMRPHRLEDLIGQEHLSSPNSFLFRAIRAGNIPSL 60
Query: 162 IFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVL 221
I WGPPG GKTT+A I N + F LSA++SGVK++R+ ++ A K VL
Sbjct: 61 ILWGPPGVGKTTIANIIANEIKAP--FYTLSAISSGVKEIREVIDKA-----KFQTGVVL 113
Query: 222 FVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDV 281
F+DE+HRFNKSQQD+ L +E G I IGATTENPSF + LLSRC+V TLNPL ++
Sbjct: 114 FIDEIHRFNKSQQDALLGAVEKGIIRLIGATTENPSFEVNAALLSRCQVFTLNPLGKSEL 173
Query: 282 EILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRV 341
E +L +A++ K V R ++ E L GD R LN EI
Sbjct: 174 EAMLHQAME-------KDVFLKRKKIELRETEALLRISGGDGRKLLNLFEIVV------- 219
Query: 342 PVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRG 401
+S G P + + E Q K YD++GE+HY++ISA KS+RG
Sbjct: 220 ------------DSIGEEPII--IADKKVTEIAQQKIALYDKSGEQHYDIISAFIKSIRG 265
Query: 402 NDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPE 461
+D +AA+YWLARM+EGGE +IARRLV ASED+G A+P AL A +C++A +G PE
Sbjct: 266 SDPNAAVYWLARMIEGGEDVKFIARRLVILASEDIGNANPNALLLATNCFEAVKMIGYPE 325
Query: 462 CNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYG 521
+ILAQCV YLA + KS + Y A+ AQ + E + VPLHLRNAPTKLMK++ YG
Sbjct: 326 SRIILAQCVTYLASSAKSNASYLAINQAQAAVAEK--GDLPVPLHLRNAPTKLMKDLSYG 383
Query: 522 KGYIYTPD--DPSAKQSFLPPSLEGYKFLDWPKSNTTD 557
K Y Y D + Q FLP +L+ KF D P +N +
Sbjct: 384 KNYQYAHDYENNFVAQEFLPDALKNTKFYD-PGNNARE 420
>gi|407803342|ref|ZP_11150178.1| recombination factor protein RarA [Alcanivorax sp. W11-5]
gi|407022711|gb|EKE34462.1| recombination factor protein RarA [Alcanivorax sp. W11-5]
Length = 441
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/425 (46%), Positives = 263/425 (61%), Gaps = 37/425 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ R+RP ++ + VGQ HL+ P LR A+ +L S+I WGPPGTGKTTLA + +
Sbjct: 14 HQPLAARLRPASLEEYVGQQHLVGPGKPLRRALDQGQLHSMILWGPPGTGKTTLALILAH 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V + FV +SAV +GVKD+R VE AR R+ +RTVLFVDEVHRFNKSQQD+FLP
Sbjct: 74 HVQAA--FVTMSAVLAGVKDIRAEVERARD-RLAMGRRTVLFVDEVHRFNKSQQDAFLPH 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+++FIGATTENPSF L LLSR RV L L+ D+ LL RA+ ++ +
Sbjct: 131 VEDGTLIFIGATTENPSFELNNALLSRARVYRLQSLQRDDLAQLLDRAL------ATEPL 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G R+ A L DGDAR LN LEI+A ++ + ++ + P
Sbjct: 185 DGLRM--GEGARTLLLDQVDGDARRLLNLLEIAA-------------DLARGEDGEITEP 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ KE F+ +D+ G+ Y+ ISALHKS+RG+D DAA+YW ARML+GG
Sbjct: 230 LL--------KELFRDSLRRFDKGGDIFYDQISALHKSVRGSDPDAALYWFARMLDGGAD 281
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL A+ ++ LG PE + +AQ + YLA+A KS
Sbjct: 282 PLYIARRVVRMASEDIGNADPRALRLALDAWEVQERLGSPEGELAIAQALVYLAVAAKSN 341
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSF 537
++Y A A++ + E + VPLHLRNAPTKLMK GYG Y Y D P A +S+
Sbjct: 342 AVYNAYNQARRFVAEH--PTDEVPLHLRNAPTKLMKAEGYGDDYRYAHDFPDAYVPGESY 399
Query: 538 LPPSL 542
P S+
Sbjct: 400 FPTSI 404
>gi|119356781|ref|YP_911425.1| recombination factor protein RarA [Chlorobium phaeobacteroides DSM
266]
gi|119354130|gb|ABL65001.1| Recombination protein MgsA [Chlorobium phaeobacteroides DSM 266]
Length = 446
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/424 (46%), Positives = 270/424 (63%), Gaps = 34/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D++GQDHL+ ++ LR + S + PS+IFWGPPG+GKTTLA +S+
Sbjct: 26 PLAERMRPRTLDDIMGQDHLVGRDAPLRRFLASGQFPSMIFWGPPGSGKTTLAGICASSL 85
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSA+ SGVK+VR A+E+A K R + RT+LF+DE+HRFNK+QQD+ L IE
Sbjct: 86 --QFGFEKLSAIDSGVKEVRKALENAEKAR-RRGVRTMLFIDEIHRFNKAQQDTLLHAIE 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G +V +GATTENPSF + LLSR +V LNPL ++E + +N+ L+
Sbjct: 143 EGLVVLVGATTENPSFEVNAALLSRAQVYILNPLGDREIEAV-------INHALTSDTVL 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + V + +FL GDAR ALNALE AA+ + V E C
Sbjct: 196 SALSVVLEDPDFLVRFSAGDARKALNALE-----AAIAL----VSE---------CGQKS 237
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T ++A Q + YD+ GE HY+ +SA KSMRG+D DAA++WLARM+EGGE P
Sbjct: 238 VVLTRKIFEQALQYRAPVYDKGGEVHYDTVSAFIKSMRGSDPDAALFWLARMIEGGEDPK 297
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V FASEDVG ADP AL AVS + A +GMPE + LAQ V YLA APKS +
Sbjct: 298 FIARRMVIFASEDVGNADPYALTLAVSVFHAVELIGMPEARINLAQGVTYLAGAPKSNAS 357
Query: 483 YRALGAAQKVIRESVG-QNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+A+ AA + ES ++ VP+ LRNAPTK MK +GYG GY Y D P ++S+ P
Sbjct: 358 YQAMNAA---LSESPSLRSFPVPMQLRNAPTKFMKNLGYGGGYRYPHDYPGHFVEESYFP 414
Query: 540 PSLE 543
+E
Sbjct: 415 EGVE 418
>gi|452879898|ref|ZP_21956952.1| recombination factor protein RarA [Pseudomonas aeruginosa VRFPA01]
gi|452183591|gb|EME10609.1| recombination factor protein RarA [Pseudomonas aeruginosa VRFPA01]
Length = 441
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 269/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDETALRKLVGRALSE-----EKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ + L + DGD R LN LE +A A ED S SP +
Sbjct: 185 RNLSLPEESFQVLLAAADGDGRRLLNLLENAADLA--------------EDGSQ-ISPEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQNLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE+VG ADP AL +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEVGNADPRALGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + ES G E VPLHLRNAPTKLMK +GYG+ Y Y D+P +A + + P
Sbjct: 343 YSAFNAAMRDVAES-GSRE-VPLHLRNAPTKLMKSLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE ++
Sbjct: 401 EDLEPRRY 408
>gi|381151794|ref|ZP_09863663.1| AAA ATPase [Methylomicrobium album BG8]
gi|380883766|gb|EIC29643.1| AAA ATPase [Methylomicrobium album BG8]
Length = 435
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 202/439 (46%), Positives = 267/439 (60%), Gaps = 53/439 (12%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++++ GQ H+L P L ++ + RL S+IFWGPPG GKTTLA+ I
Sbjct: 8 PLADRMRPQSLDEYAGQKHILKPGKPLYESIMAGRLHSMIFWGPPGAGKTTLARLIARHA 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F +SAV +GVK++R AV +A+ L + RT+LFVDEVHRFNK+QQD+FLP +E
Sbjct: 68 --DAEFAPVSAVLAGVKEIRAAVAEAQFLLQQQQHRTILFVDEVHRFNKAQQDAFLPHVE 125
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ FIGATTENPSF L LLSR RV LNPL D+ + +RA+ D GL
Sbjct: 126 DGTVYFIGATTENPSFALNNALLSRARVYVLNPLTAEDLSAVAERALTDRERGLG----- 180
Query: 303 TRVEVNHDAI---EFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
R+E+ DA +F+ + DGDAR LN LE++
Sbjct: 181 -RLEIAMDAEIRGQFVQA-ADGDARRLLNLLELA-------------------------- 212
Query: 360 PYVALVTLDDAK---EAFQCKHLA-----YDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
V L +D K EA C+ L+ +D+ GEE YN ISALHKS+RG+ DAA+YWL
Sbjct: 213 --VELAAANDEKTIGEALACEVLSGGVRRFDKQGEEFYNQISALHKSVRGSAPDAALYWL 270
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+ G YIARR+VR ASED+G ADP L A+ +QA LG PE + LAQ V
Sbjct: 271 CRMLDAGCDLAYIARRIVRMASEDIGNADPRGLQIALDAWQAQERLGSPEGELALAQAVV 330
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLA APKS ++YRA AA + + S + GVP+HLRNAPTKLM+ + YGK Y Y D+P
Sbjct: 331 YLACAPKSNAVYRAYNAAMQDAKRS--GSLGVPVHLRNAPTKLMQALDYGKAYRYAHDEP 388
Query: 532 ---SAKQSFLPPSLEGYKF 547
+A +++ P L G +
Sbjct: 389 EAYAAGENYFPDELRGTTY 407
>gi|372271108|ref|ZP_09507156.1| ATPase, AAA family domain-containing protein [Marinobacterium
stanieri S30]
Length = 450
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 265/425 (62%), Gaps = 29/425 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP ++ +GQ HLL+ LR A+ + S+I WGPPG GKTTLAK + +
Sbjct: 12 YQPLAARMRPTRLDRYIGQSHLLAAGKPLRQALEQGAIHSMILWGPPGVGKTTLAKLVAH 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V F+ +SAV +GVK++R AV++AR+++ +S ++T+LFVDEVHRFNKSQQD+FLP
Sbjct: 72 QVDA--HFMTVSAVLAGVKEIRQAVDEARQVKAQSGRKTILFVDEVHRFNKSQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+++FIGATTENPSF L LLSR RV L L ++ ++++A+ D GL
Sbjct: 130 VEDGTVIFIGATTENPSFELNNALLSRARVYLLRSLTQEELGQVIEQALSDEEQGL---- 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++++ + + L DGDAR ALN LEI+A A VR +DG
Sbjct: 186 GSQQLQIPQEMRDQLTLAADGDARTALNLLEIAADLAQVR--------------ADGTRQ 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT + E Q +D+ G+ Y++ISA HKS+RG+ D A+YW RML+GG
Sbjct: 232 ----VTPEVLTEVLQAGGRRFDKGGDHFYDMISAFHKSVRGSSPDGALYWYCRMLDGGAD 287
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRLV ASED+G ADP A+ A+S + A +G E +AQ Y A APKS
Sbjct: 288 PLYVARRLVAIASEDIGNADPRAMQVALSAWDAFERVGPSEGERAIAQAAIYCACAPKSN 347
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++YRA Q +R++ + VP HLRNAPT LMK++GYG Y Y D+P +A +++
Sbjct: 348 AVYRAFNQCQADVRQA--GSLPVPEHLRNAPTSLMKDLGYGAEYRYAHDEPDAYAAGENY 405
Query: 538 LPPSL 542
LP +L
Sbjct: 406 LPEAL 410
>gi|163855896|ref|YP_001630194.1| recombination factor protein RarA [Bordetella petrii DSM 12804]
gi|163259624|emb|CAP41925.1| conserved hypothetical protein [Bordetella petrii]
Length = 446
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 197/439 (44%), Positives = 269/439 (61%), Gaps = 33/439 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP +++VVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRTLSEVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGF--DAQFIAISAVLGGVKDIRDAVVTA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSADELQQLIDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V +N G G +V DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 VHALNEGRE---AGAQVRFTADAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
DE D +L ++L +D+ G+ Y+ ISALHK++RG+D DAA
Sbjct: 227 AAGRDEVDAGWLETSL-----------SQNLRRFDKGGDAFYDQISALHKAVRGSDPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YWLARML+GG P Y+ARRLVR A ED+GLADP A A++ LG PE + LA
Sbjct: 276 LYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAINGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A AA+K E+ + VP+HLRNAPTKLMK++G+G Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNAARKFAAEN--GSAPVPMHLRNAPTKLMKQLGHGHAYRYA 393
Query: 528 PDDP---SAKQSFLPPSLE 543
D+P +A + + P ++
Sbjct: 394 HDEPHGYAAGEQYFPDGVK 412
>gi|333897282|ref|YP_004471156.1| ATPase AAA [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112547|gb|AEF17484.1| AAA ATPase central domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 442
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 192/431 (44%), Positives = 272/431 (63%), Gaps = 28/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL++RMRP +++ VGQ H+L + LL A+ ++++ S+IF+GPPGTGKTTLA I N
Sbjct: 15 NAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKADKVRSLIFYGPPGTGKTTLANIIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F L+AVTSGV D++ V +++ KRT+LFVDE+HRFNKSQQD+ LP
Sbjct: 75 TTKSS--FEKLNAVTSGVTDIKKIVNESKDRLSMYGKRTILFVDEIHRFNKSQQDALLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENP F +I PL+SR + L PL D+ ++ RA++D GL
Sbjct: 133 VEDGTIILIGATTENPYFEVIRPLVSRSMIFELYPLSDDDIREIVLRALNDEKRGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G +++V DA+ + + DGDAR ALNA+E++ +T + DE+
Sbjct: 189 GNEKIKVTDDALNHIIAYSDGDARTALNAIELAFLTT-------------ERDENG---- 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V + ++ A+E Q K L YD+ G+ HY+ ISA KSMRG+D DAA+YWLA+M+ GE
Sbjct: 232 -VINIDIEVAQECIQRKVLKYDKNGDNHYDTISAFIKSMRGSDPDAALYWLAKMIYAGED 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P++IARR+V A+EDVG ADP ALN AVS QA + +GMPE +ILAQ Y+A APKS
Sbjct: 291 PMFIARRIVICAAEDVGNADPNALNIAVSAMQAVNQIGMPEGRIILAQAAIYVACAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S + +A I+ + VP+HL++A K K + G GY Y D + KQ +L
Sbjct: 351 SAIMGIDSALDDIKHL--KTGAVPMHLQDAHYKDAKNLNRGVGYKYAHDFKNHYVKQQYL 408
Query: 539 PPSLEGYKFLD 549
P L G ++ +
Sbjct: 409 PDELIGKRYYN 419
>gi|237746808|ref|ZP_04577288.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
gi|229378159|gb|EEO28250.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
Length = 430
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 204/432 (47%), Positives = 269/432 (62%), Gaps = 46/432 (10%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+P APL+ER+RP I++VVGQ+HLL P LR A S S+I WGPPG GKTTLA+ +
Sbjct: 1 MPQAPLAERLRPQTIDEVVGQEHLLGPGKPLRLAFESGEPHSMILWGPPGVGKTTLARLM 60
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+ + +F+ LSAV SGVKD+R+AVE AR +R S +RT+LFVDEVHRFNKSQQD+FL
Sbjct: 61 AD--GFNAEFIALSAVLSGVKDIREAVERARLIRSGSGRRTILFVDEVHRFNKSQQDAFL 118
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G FIGATTENPSF + LLSR V L PL +++ L+ RA++ +GL+
Sbjct: 119 PHVESGLFTFIGATTENPSFEVNNALLSRAAVYVLKPLDNGNLDTLVNRALERELDGLT- 177
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
V+ +A L + DGDAR LN LEI V + + E+E
Sbjct: 178 --------VSAEARTLLLMSADGDARRLLNNLEI----------VAQAARAKNEEEIG-- 217
Query: 359 SPYVALV--TLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
VAL+ TL DA F D G+ Y+ ISALHKS+RG+ DAA+YWL RML+
Sbjct: 218 ---VALLKETLGDAMRRF-------DNKGDHFYDQISALHKSVRGSSPDAALYWLTRMLD 267
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLAL---NQAVSCYQACHFLGMPECNVILAQCVAYL 473
GG P Y+ARR+VR A ED+GLADP A+ N A S Y+ LG PE + LAQ V YL
Sbjct: 268 GGADPRYLARRIVRMAWEDIGLADPRAVQIANDAASTYER---LGSPEGELALAQAVIYL 324
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP-- 531
A+A KS + Y A A+ +++ ++ VP+HLRNAPT+LMKE+GYG Y Y D+P
Sbjct: 325 AVAAKSNAGYVAYNQARAFVKQD--KSREVPVHLRNAPTRLMKELGYGHEYRYAHDEPNA 382
Query: 532 -SAKQSFLPPSL 542
+A +++ P +
Sbjct: 383 YAAGETYFPDGM 394
>gi|405124058|gb|AFR98820.1| helicase [Cryptococcus neoformans var. grubii H99]
Length = 542
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 204/442 (46%), Positives = 269/442 (60%), Gaps = 32/442 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNS 181
PL+ER RP I+ +GQ ++ SLLR + S +L S I WGPPG GKTTLA+ I S
Sbjct: 56 PLAERSRPSEISQYIGQSDIVGSGSLLRVQIESGKLVGSCILWGPPGCGKTTLARLIAKS 115
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+K LSA +SG +DVR E A+ + +RTVL +DE+HRFN++QQD LP +
Sbjct: 116 SGADFKE--LSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYV 173
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF + LLSRC+V TL+ P ++I+L+ AV ++ S+ +
Sbjct: 174 EKGWIQLIGATTENPSFKVNGALLSRCQVFTLHAHSPESLQIILRNAVQTISE--SEQIP 231
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT------AAVRVPVKEVK-----EVE 350
E+ I FL DGDAR ALN LE++ T AA+ + V +V+
Sbjct: 232 YLPPEL----ISFLADVADGDARQALNGLELALRTCQTMDEAAIAEKAQWVNSAGGGKVK 287
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHL---------AYDRAGEEHYNLISALHKSMRG 401
+E + D V DD K+ + + Y+R GEE Y++ISALHK +RG
Sbjct: 288 KEGQKDEFDAAVEEAEEDDRKKKRDEEIMDAVRRGLQKGYNRTGEERYDMISALHKCLRG 347
Query: 402 NDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPE 461
+D AA+YWLARM+ GGE PLYIARRL+ ASEDVGLAD AL A++ YQAC +G+PE
Sbjct: 348 SDGSAAMYWLARMITGGEDPLYIARRLIVVASEDVGLADNHALPLAMATYQACQTIGLPE 407
Query: 462 CNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYG 521
C + LA CVAYLA APKS Y+A GAA+++ +V GVPL +RNAPT+LMK++GYG
Sbjct: 408 CRINLAHCVAYLAEAPKSTRSYKAYGAAEQLA--TVPPLPGVPLQIRNAPTQLMKKLGYG 465
Query: 522 KGYIYTPD-DPSAKQSFLPPSL 542
K Y Y PD +LP SL
Sbjct: 466 KEYAYNPDYGHPVHNDYLPESL 487
>gi|254420530|ref|ZP_05034254.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
gi|196186707|gb|EDX81683.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
Length = 442
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 266/440 (60%), Gaps = 39/440 (8%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
D+ + + P APL++R+RP +++VVGQDHLL P +R + + RL S+I WGPPGT
Sbjct: 3 DLFEASGILPPDAPLADRLRPRTLDEVVGQDHLLGPGGPIRRMIEAGRLGSMILWGPPGT 62
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTT+A+ + A Y++ +SAV SGV D++ A E AR +R + + T+LFVDE+HRF
Sbjct: 63 GKTTIARLLAQ--AAGYEYQSISAVFSGVADLKKAFEAAR-MRRAAGQSTLLFVDEIHRF 119
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
N++QQD FLP +E G + +GATTENPSF L LLSR +V L L ++ LL RA
Sbjct: 120 NRAQQDGFLPFVEAGVVTLVGATTENPSFELNGALLSRSQVYVLKRLDDAALDQLLSRAE 179
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
+ GL ++ +A + + + DGD R L E+ +P E+ +V
Sbjct: 180 AHMERGLP---------LSPEARQAMLALADGDGRYLLTMSEV-----LFDLPEGEMLDV 225
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
+ +A V Q + AYD++ EEHYNLISALHKS+RG+D DAA+Y
Sbjct: 226 QG----------LAAV--------LQRRAPAYDKSREEHYNLISALHKSVRGSDPDAALY 267
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WLARML GGE PLY+ARR+VR A ED+G ADPL++ A + FLG PE + LAQ
Sbjct: 268 WLARMLNGGEDPLYLARRIVRMAVEDIGEADPLSILVANAAKDTYDFLGSPEGELALAQA 327
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
V +LA APKS+ +Y A AA+K E+ P H+RNAPTKLMK +GYGKGY Y PD
Sbjct: 328 VVHLATAPKSVGVYEAFKAARKAAYETGSLTP--PAHIRNAPTKLMKSLGYGKGYQYDPD 385
Query: 530 DPS--AKQSFLPPSLEGYKF 547
P + +F P +E F
Sbjct: 386 TPEGFSGANFFPDEMERRTF 405
>gi|367008062|ref|XP_003688760.1| hypothetical protein TPHA_0P01680 [Tetrapisispora phaffii CBS 4417]
gi|357527070|emb|CCE66326.1| hypothetical protein TPHA_0P01680 [Tetrapisispora phaffii CBS 4417]
Length = 602
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 271/439 (61%), Gaps = 38/439 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNS-LLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
+ H PLSE++RP + D VGQ HL+S S +L + ++PS+I WGPPG GKTTLA+
Sbjct: 126 ISHLPLSEKLRPHELKDYVGQQHLMSKESGILARYITEGQIPSMILWGPPGVGKTTLARI 185
Query: 178 IVNSVA-------VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
I + + SY+ V +SA + +++R E +R + +R VLF+DE+HRFN
Sbjct: 186 ITKAASESNPDSKTSYQLVEVSATKTNSQELRSIFEKSRNEYKLTKRRIVLFIDELHRFN 245
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
K+QQD LP IE+G I+ IGATTENPSF + L+SRC V L L +++ I+L R V
Sbjct: 246 KAQQDLLLPHIENGDIILIGATTENPSFQMNNALISRCNVFVLEKLSTNEICIVLSRGVA 305
Query: 291 DVNNGLSKSVGGTR-VEVNHDAIEFLCSNCDGDARVALNALEISAITA---AVRVPVKEV 346
+N T ++++ +E++ + C GD R ALN LE+ ++ ++ + V +
Sbjct: 306 LLNKCRKLLWHTTNPLKLSRMVLEYIVNLCVGDTRKALNILEMIELSTRDVSIELTVDSI 365
Query: 347 KEVEQEDESD-GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD 405
K++ +++ S+ G + Y YDR G+ HY+ ISALHK++RG DA+
Sbjct: 366 KDIMRQNTSESGVNSY-------------------YDRNGDNHYDTISALHKAVRGGDAN 406
Query: 406 AAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVI 465
AA+ +L RML+GGE PLYIARR++R ASED+G+AD L AVS + A +G+PEC+VI
Sbjct: 407 AALLYLGRMLQGGEDPLYIARRMIRMASEDIGVADSSLLTLAVSTHDAVMKIGLPECDVI 466
Query: 466 LAQCVAYLALAPKSISIYRALGAAQKVIRE---SVGQNEGVPLHLRNAPTKLMKEIGYGK 522
LA C LA A KS+ +YRA + +++E S+ +E +P+H+RNAPTKLMKE+GY K
Sbjct: 467 LAHCCVELARAKKSVEVYRAYNKVKTMLKENTYSLASSE-IPMHIRNAPTKLMKELGYHK 525
Query: 523 GYIYTPD--DPSAKQSFLP 539
GY Y PD D KQ + P
Sbjct: 526 GYKYNPDFIDGKVKQEYFP 544
>gi|422322913|ref|ZP_16403953.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans
C54]
gi|317402140|gb|EFV82732.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans
C54]
Length = 446
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/439 (44%), Positives = 269/439 (61%), Gaps = 33/439 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP + DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRTLADVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGFDA--QFIAISAVLGGVKDIRDAVTVA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L P +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTPEELQQLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ N+G + R+ ++ DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 ITAFNDGHEED---ARIHIDADAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D ++L ++L +D+ G+ Y+ ISALHKS+RG++ DAA
Sbjct: 227 AAGRDTVDAAWLEISL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSNPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW RM++GG P Y+ARRLVR A ED+GLADP A + AV+ LG PE + LA
Sbjct: 276 LYWFCRMIDGGADPKYLARRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A A+K E + VP+HLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNQARKFAAEH--GSAPVPIHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSLE 543
D+P +A + + P L+
Sbjct: 394 HDEPHGYAADEQYFPDGLK 412
>gi|292493395|ref|YP_003528834.1| ATPase AAA [Nitrosococcus halophilus Nc4]
gi|291581990|gb|ADE16447.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
Length = 454
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 267/430 (62%), Gaps = 31/430 (7%)
Query: 104 RLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIF 163
R+ + H S ++ V PL++RMRP ++D VGQ HLL + LR A+ + R S++
Sbjct: 9 RVMSLHGEKSPFSVDVAGCPLADRMRPQKLDDFVGQSHLLDKGAPLRQAIETGRPHSMVL 68
Query: 164 WGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFV 223
WGPPGTGKTTLA+ I + +F+ LSAV +GVK+VR AV+ A+++R + TVLFV
Sbjct: 69 WGPPGTGKTTLARLIAHYCQA--QFISLSAVLAGVKEVRAAVDKAQRVRSEEGYGTVLFV 126
Query: 224 DEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEI 283
DEVHRFNKSQQD+FLP +E+G+ +FIGATTENPSF L LLSRCRV L L+ D+
Sbjct: 127 DEVHRFNKSQQDAFLPYVENGTFIFIGATTENPSFELNNALLSRCRVYVLKCLRVGDICT 186
Query: 284 LLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV 343
L+ RA+ D GL G + + + L DGDAR ALN LEI++ A
Sbjct: 187 LINRALADPEQGL----GRRSLTMAETLCQRLAEAADGDARRALNLLEIASDLA------ 236
Query: 344 KEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND 403
E K + +E L+ + + +D+ GE Y ISALHK++RG+
Sbjct: 237 -EKKTIPEE-----------LLN-----QVLRGGVRRFDKGGEAFYEQISALHKAVRGSA 279
Query: 404 ADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECN 463
DAA+YWL RML+GG P Y+ARRLVR ASED+G ADP AL A+ ++A LG PE
Sbjct: 280 PDAALYWLCRMLDGGCDPSYLARRLVRIASEDIGNADPRALRLALDAWEAYERLGSPEGE 339
Query: 464 VILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKG 523
+ LAQ V +L+ APKS + Y+AL AA + + + GVPLHLRNAPTKL+KE+GYG
Sbjct: 340 LALAQAVIFLSCAPKSNATYKALNAATRDAKAY--GSLGVPLHLRNAPTKLLKELGYGNR 397
Query: 524 YIYTPDDPSA 533
Y Y D+P A
Sbjct: 398 YRYPHDEPEA 407
>gi|336431254|ref|ZP_08611108.1| hypothetical protein HMPREF0991_00227 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336020176|gb|EGN49893.1| hypothetical protein HMPREF0991_00227 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 438
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 265/430 (61%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP + +VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I ++
Sbjct: 16 SPLASRMRPQMLEEVVGQQHIIGKDKLLYRAIKADKLGSIIFYGPPGTGKTTLAKVIAHT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +K ++A +G KD+ V +A++L K+T+LF+DE+HRFNK QQD LP +
Sbjct: 76 TSAEFK--QINATVAGKKDMEQVVNEAKELLGMYRKKTILFIDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENP F + + L+SR V L L D+ LLKRAV D N G+ G
Sbjct: 134 EDGTITLIGATTENPYFEVNSALISRSSVFELKSLGKEDIRTLLKRAVYDENKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
E++ DA+EFL GDAR ALNA+E+ +T E DG
Sbjct: 190 NFHAEIDEDALEFLADVSGGDARSALNAIELGVLTT--------------ERSEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 235 ---ITLDVASECIQKRVVRYDKGGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ A+EDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICAAEDVGNADPMALTVAVSAAQAVERIGMPEAQIILSQAVLYVATAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA + +R+ VP HL++A K K +G+G GY Y D P+ +Q +LP
Sbjct: 352 AVNAIFAANENVRQY---KTTVPSHLQDAHYKGSKNLGHGIGYKYAHDYPNHYVEQQYLP 408
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 409 DEIKNARFYE 418
>gi|429762793|ref|ZP_19295166.1| ATPase, AAA family [Anaerostipes hadrus DSM 3319]
gi|429180654|gb|EKY21863.1| ATPase, AAA family [Anaerostipes hadrus DSM 3319]
Length = 438
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/440 (44%), Positives = 273/440 (62%), Gaps = 31/440 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP +++VVGQ+H++ + LL A+ ++++ SIIF+GPPGTGKTTLAK I N+
Sbjct: 16 SPLAGRMRPATLDEVVGQEHIIGKDKLLYRAIKADKISSIIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ FV ++A TSG KD+++AV DA++ K+T+LF+DE+HRFNK+QQD LP +
Sbjct: 76 TKAN--FVQMNATTSGKKDMQEAVADAKESLGMYQKKTILFIDEIHRFNKAQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR V L+ L D++ L+ RA+ D G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNQALISRSNVFELHSLDKEDIKKLIVRAITDDEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ DA++FL +GDAR ALNA+E+ +T E DG
Sbjct: 190 IYGATITDDALDFLSDMAEGDARSALNAIELGILTT--------------EPAEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +D A+E Q + YD+ G+ HY++ISA KSMRG+D DAAIY+LARM++ GE
Sbjct: 235 ---IDIDVAQECIQRRVTKYDKDGDNHYDVISAFIKSMRGSDPDAAIYYLARMIDAGESV 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL AV+ QA +GMPE +ILAQ V Y+A APKS +
Sbjct: 292 TFIARRIMICASEDVGNADPQALQVAVAASQAVERIGMPEARIILAQAVTYVASAPKSNA 351
Query: 482 IYRALGAAQKVIR-ESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
Y A+ A + +R +G VP HLR+A K ++G+G GY Y D P KQ +L
Sbjct: 352 AYMAVDQALESVRNHKIG---AVPNHLRDAHYKGAAKLGHGIGYKYAHDYPDHYVKQQYL 408
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L G F + P N +K
Sbjct: 409 PDELLGTTFYE-PTENGYEK 427
>gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
gi|167710099|gb|EDS20678.1| recombination factor protein RarA [Clostridium sp. SS2/1]
gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [butyrate-producing bacterium SSC/2]
gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 438
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 274/440 (62%), Gaps = 31/440 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP +++VVGQ+H++ + LL A+ ++++ SIIF+GPPGTGKTTLAK I N+
Sbjct: 16 SPLAGRMRPATLDEVVGQEHIIGKDKLLYRAIKADKISSIIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ FV ++A TSG KD+++AV DA++ K+T+LF+DE+HRFNK+QQD LP +
Sbjct: 76 TKAN--FVQMNATTSGKKDMQEAVADAKESLGMYQKKTILFIDEIHRFNKAQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR V L+ L D++ L+ RA+ D G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNQALISRSNVFELHSLDKEDIKKLIVRAITDDEKGMG-IYG 192
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
T + DA++FL +GDAR ALNA+E+ +T E DG
Sbjct: 193 AT---ITDDALDFLSDMAEGDARSALNAIELGILTT--------------EPAEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +D A+E Q + YD+ G+ HY++ISA KSMRG+D DAAIY+LARM++ GE
Sbjct: 235 ---IDIDVAQECIQRRVTKYDKDGDNHYDVISAFIKSMRGSDPDAAIYYLARMIDAGESV 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL AV+ QA +GMPE +ILAQ V Y+A APKS +
Sbjct: 292 TFIARRIMICASEDVGNADPQALQVAVAASQAVERIGMPEARIILAQAVTYVASAPKSNA 351
Query: 482 IYRALGAAQKVIR-ESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
Y A+ A + +R +G VP HLR+A K ++G+G GY Y D P KQ +L
Sbjct: 352 AYMAVDQALESVRNHKIG---AVPNHLRDAHYKGAAKLGHGIGYKYAHDYPDHYVKQQYL 408
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L G F + P N +K
Sbjct: 409 PDELLGTTFYE-PTENGYEK 427
>gi|349699578|ref|ZP_08901207.1| recombination factor protein RarA [Gluconacetobacter europaeus LMG
18494]
Length = 462
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 257/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++DVVGQDHLL P LR + L S+I WG PG GKTT+A+ + N
Sbjct: 44 PLADRLRPATLDDVVGQDHLLGPQGSLRQMLARGSLASLILWGGPGVGKTTIARLLAN-- 101
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +FV LSAV SGV D++ A EDAR+ S T+LFVDE+HRFN++QQD FLPV+E
Sbjct: 102 AAGLRFVQLSAVFSGVADLKRAFEDARRTSA-SGGGTLLFVDEIHRFNRAQQDGFLPVVE 160
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L + LLSRC+VL L+ L +E LL+RA + G
Sbjct: 161 DGTVVLVGATTENPSFALNSALLSRCQVLVLHRLDDAAMEKLLERA---------ELATG 211
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T + + +A L + DGD R LN +E + P+
Sbjct: 212 TTLPLTPEARATLRAMADGDGRYLLNMVEQLLALPPQKAPLDP----------------A 255
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +L + A YD+ EEHYNLISALHKSMRG+D DAA+YW ARMLEGGE P
Sbjct: 256 ALSSLLARRAAL------YDKDREEHYNLISALHKSMRGSDPDAALYWFARMLEGGEDPR 309
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG+ADP AL AV+ ++ LG PE + LAQ V +LA APKS ++
Sbjct: 310 YIARRLTRFAAEDVGMADPQALPLAVAAWETFERLGSPEGELALAQLVVHLATAPKSNAV 369
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+ A++ R + P H+ NAPT LMK+IGYGKGY Y D + Q++ P
Sbjct: 370 YKGYNMARRAARATGSLMP--PAHILNAPTTLMKDIGYGKGYEYDHDTEGGISGQNYFPD 427
Query: 541 SLE 543
+
Sbjct: 428 GMR 430
>gi|167854588|ref|ZP_02477369.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
gi|219872223|ref|YP_002476598.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
gi|167854343|gb|EDS25576.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
gi|219692427|gb|ACL33650.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
Length = 447
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 270/428 (63%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLS RMRP + + VGQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I N +
Sbjct: 14 PLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANEL 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSG+K++R+A+E A KL +S +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGIKEIREAIEKA-KLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR R+ L PL+ D+ +L+ A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRARIYILKPLQAVDILKILQNAIADKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + D ++ L +GD R +LN LE+ A ++P ++ +
Sbjct: 187 EKLIIQDDVLQLLADYVNGDGRFSLNCLELMC-DMAEQLPQGKLLDK------------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+T E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 ALLT-----EVLGERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQVALAAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPT LMK +GYG+ Y Y D+P +A +++ P
Sbjct: 348 YTAFKQAKRLAQE--GKDYDVPEHLRNAPTSLMKSLGYGEEYRYAHDEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 406 PELKDTQF 413
>gi|325263700|ref|ZP_08130433.1| ATPase, AAA family [Clostridium sp. D5]
gi|324030738|gb|EGB92020.1| ATPase, AAA family [Clostridium sp. D5]
Length = 438
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 266/430 (61%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP ++ +VVGQ H++ + LL A+ +++L S+IF+GPPGTGKTTLAK I N+
Sbjct: 16 SPLASRMRPSSLEEVVGQQHIIGRDKLLYRAIKADKLGSLIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +K ++A +G KD+ + V+ A++L K+T+LF+DE+HRFNK QQD LP +
Sbjct: 76 TSAEFK--QINATIAGKKDMEEVVKGAKELLGMYQKKTILFIDEIHRFNKGQQDYLLPYV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENP F + LLSR V L L DV+ LLKRAV D G+ G
Sbjct: 134 EDGTITLIGATTENPYFEVNGALLSRSSVFELKSLSREDVKTLLKRAVYDKEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ E+ DA+EFL GDAR ALNA+E+ +T E +DG
Sbjct: 190 TFKAEITEDALEFLADVSGGDARNALNAVELGILTT--------------ERSADG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TLD A E Q + + YD+ G+ HY+ SA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 232 LIHITLDVASECIQKRVVRYDKTGDNHYDTSSAFIKSMRGSDPDAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICASEDVGNADPMALTVAVSAAQAVERIGMPEAQIILSQAVTYVASAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA + +R VP HL++A K +++G+G GY Y D P KQ +LP
Sbjct: 352 ATNAIFAATESVRR---HKTTVPAHLQDAHYKGSQKLGHGVGYKYAHDYPGHYVKQQYLP 408
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 409 DEIKDARFYE 418
>gi|154502582|ref|ZP_02039642.1| hypothetical protein RUMGNA_00395 [Ruminococcus gnavus ATCC 29149]
gi|153796774|gb|EDN79194.1| recombination factor protein RarA [Ruminococcus gnavus ATCC 29149]
Length = 438
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 265/430 (61%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP + +VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I ++
Sbjct: 16 SPLASRMRPQTLEEVVGQQHIIGKDKLLYRAIKADKLGSIIFYGPPGTGKTTLAKVIAHT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +K ++A +G KD+ V +A++L K+T+LF+DE+HRFNK QQD LP +
Sbjct: 76 TSAEFK--QINATVAGKKDMEQVVNEAKELLGMYRKKTILFIDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENP F + L+SR V L L+ D+ LLKRAV D N G+ G
Sbjct: 134 EDGTITLIGATTENPYFEVNGALISRSSVFELKSLEKEDIRTLLKRAVYDENKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
E++ DA+EFL GDAR ALNA+E+ +T E DG
Sbjct: 190 SFHAEIDEDALEFLADVSGGDARSALNAIELGVLTT--------------ERSEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 235 ---ITLDVASECIQKRVVRYDKGGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ A+EDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICAAEDVGNADPVALTVAVSAAQAVERIGMPEAQIILSQAVLYVATAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA + +R+ VP HL++A K K +G+G GY Y D P+ +Q +LP
Sbjct: 352 AVNAIFAANENVRQY---KTTVPSHLQDAHYKGSKNLGHGIGYKYAHDYPNHYVEQQYLP 408
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 409 DEIKNARFYE 418
>gi|409197232|ref|ZP_11225895.1| recombination factor protein RarA [Marinilabilia salmonicolor JCM
21150]
Length = 423
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/436 (45%), Positives = 266/436 (61%), Gaps = 34/436 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP ++ +GQ HL+ ++L V S R+ SII WGPPG GKTTLA+ I N
Sbjct: 4 YPPLAERMRPQSLEHYIGQKHLVGEGAVLYQMVSSGRISSIILWGPPGVGKTTLARIIAN 63
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSAV SGVKDVR+A+E ARK R ++ +LF+DE+HRF+KSQQDS L
Sbjct: 64 QL--ERPFYTLSAVNSGVKDVREAIEKARKARFFNSASPILFIDEIHRFSKSQQDSLLGA 121
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G + +GATTENPSF +I+PLLSRC+V L PL+ D+ +L R S+ +
Sbjct: 122 VEEGVVTLVGATTENPSFEVISPLLSRCQVYVLKPLENEDLMVLFNRI-------FSEDI 174
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V E L GDAR LN +E+ IT A + EDE
Sbjct: 175 VLKHRPVKLKEEEALFRFAGGDARKFLNIIEL--ITNAFK-----------EDEE----- 216
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T ++ Q YD+ GE HY++ISA KS+RG+D DAA+YWLARM+EGGE
Sbjct: 217 --IVITNENVTRQLQQNPAQYDKNGEMHYDIISAFIKSIRGSDPDAAVYWLARMVEGGED 274
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRL+ ASEDVGLA+P AL A + ++A +G PE +IL++ YLA +PKS
Sbjct: 275 PKFIARRLIISASEDVGLANPNALLLATNAFEAIKMVGWPEARIILSEVTIYLATSPKSN 334
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S Y A+ AQ+V+R + N VPLHLRNAPTKLMK++ YGK Y Y + ++ Q +L
Sbjct: 335 SAYMAINQAQEVVRNT--GNLPVPLHLRNAPTKLMKKMDYGKQYKYPHSYENNFIAQDYL 392
Query: 539 PPSLEGYKFLDWPKSN 554
P L+ P++N
Sbjct: 393 PDELKNTNLFT-PQNN 407
>gi|261492454|ref|ZP_05989010.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261311913|gb|EEY13060.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 445
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/439 (43%), Positives = 275/439 (62%), Gaps = 32/439 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP N+ + VGQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 14 PLAAKMRPRNLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHL 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVERI--SAVTSGVKEIREAIEQA-KLNRQAGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR R+ L PL+ ++ +L+ A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRARIYILKPLQAVEILKILQMAIADTERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + L +GDAR ALN LE+ A +D + G
Sbjct: 187 ETLVLEDDVLALLADYVNGDARFALNCLELMVDMA--------------QDSAKGKVLNK 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L+T E + +D+ G+ +Y+LISALHKS+RG+ AD A+YW AR+L G PL
Sbjct: 233 SLLT-----EVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQIAIAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y+A A+++ +E+ ++ VP HLRNAPT+LMK +GYG+ Y Y ++P +A +++ P
Sbjct: 348 YQAFNEAKRLAKEA--KDYDVPAHLRNAPTQLMKSLGYGEEYRYAHNEPNAYAAGENYFP 405
Query: 540 PSLEGYKFLDWPKSNTTDK 558
P L+ +F +P +K
Sbjct: 406 PELKDTEFY-FPSERGMEK 423
>gi|256822345|ref|YP_003146308.1| AAA ATPase [Kangiella koreensis DSM 16069]
gi|256795884|gb|ACV26540.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069]
Length = 451
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/422 (45%), Positives = 264/422 (62%), Gaps = 30/422 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL++R+RP ++ND VGQ+HLL+ LR A+ + R S+IFWGPPGTGKTTLA+ I
Sbjct: 14 NAPLADRLRPTSLNDYVGQEHLLAAGKPLRQAIETQRPFSLIFWGPPGTGKTTLARLIAQ 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S F+ +SAV +GVKD+R AV++AR+ + + K T+LFVDEVHRFNK+QQD+FLP
Sbjct: 74 SSNA--HFITISAVLAGVKDIRAAVDEARQYQSQG-KPTILFVDEVHRFNKAQQDAFLPY 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++ FIGATTENPSF L LLSR RV L L ++ L+ RA+ D GL K
Sbjct: 131 VEDGTLTFIGATTENPSFELNNALLSRARVFVLKDLSETALDKLISRALTDEELGLGK-- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ + D+ + L DGD R LN LE+++ A + + SP
Sbjct: 189 --YHLSIADDSRKHLVDAADGDGRRLLNFLELASELALAK---------------NESSP 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ L+ E +D+ GE Y+ ISALHKS+RG++ D A+YW RM++GG +
Sbjct: 232 VIDDEVLE---ETLTQSLRRFDKGGEHFYDQISALHKSVRGSNPDGALYWFCRMIDGGCE 288
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP L A++ + LG PE + +AQ + YLA APKS
Sbjct: 289 PLYVARRVVRMASEDIGNADPRGLTLALNAWDVQERLGSPEGELAIAQAIIYLACAPKSN 348
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y+A A + +R VPLH+RNAPTKLMKE+ YG Y Y D+P SA Q++
Sbjct: 349 AVYKAYNNALRDVRNEPTYE--VPLHIRNAPTKLMKELDYGTEYRYDHDEPDAFSAGQTY 406
Query: 538 LP 539
LP
Sbjct: 407 LP 408
>gi|228472019|ref|ZP_04056787.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
gi|228276631|gb|EEK15344.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
Length = 428
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 192/438 (43%), Positives = 266/438 (60%), Gaps = 37/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRPV++ D + Q HL+ LR + PS+IFWGPPGTGKTTLA I
Sbjct: 6 PLAERMRPVHLTDYISQSHLVGEKGALRMQIEKGVTPSLIFWGPPGTGKTTLAHIIAKES 65
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSA++SG+KDVRD +E +++ + + + + ++F+DE+HRFNK+QQDS L +
Sbjct: 66 QRA--FFSLSAISSGIKDVRDIIEKSKREQGLFTARNPIIFIDEIHRFNKTQQDSLLEAV 123
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF +I LLSRC+V TLNP D+ LL RA++ + V
Sbjct: 124 ERGWVTLIGATTENPSFEVIPALLSRCQVYTLNPFSKEDLLALLTRAIE-------QDVE 176
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R ++ E L DGD R LN E+ T E +E+
Sbjct: 177 LKRKKITLKETEALLRLSDGDGRKLLNTFELIVNT------FPEGEEI------------ 218
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T D E Q + YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 219 --VITNDKVLEIVQQNTVLYDKTGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGEDV 276
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASED+G A+P+A+ A + +QA +G PE +IL+QC YLA +PKS +
Sbjct: 277 KFIARRMLILASEDIGNANPMAMVVANNTFQAVTVIGYPESRIILSQCAIYLASSPKSNA 336
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+A+ AQ+++++ N VPLHLRNAPT LMKE+ YGK Y Y D P Q F+P
Sbjct: 337 SYKAINKAQQLVKQQ--GNLSVPLHLRNAPTALMKELSYGKDYHYAHDYPHNFVFQDFMP 394
Query: 540 PSLEG---YKFLDWPKSN 554
L+G Y+ D PK N
Sbjct: 395 EELQGTTLYEPCDNPKEN 412
>gi|237748949|ref|ZP_04579429.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13]
gi|229380311|gb|EEO30402.1| recombination factor protein RarA [Oxalobacter formigenes OXCC13]
Length = 430
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 198/432 (45%), Positives = 261/432 (60%), Gaps = 44/432 (10%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ APL+ER+RP NI++VVGQ HLL P LR A S S+I WGPPG GKTTLA+ +
Sbjct: 1 MSQAPLAERLRPKNIDEVVGQQHLLGPGKPLRVAFESGEPHSMILWGPPGVGKTTLARLM 60
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+ + +F+ LSAV SGVKD+RDAVE A+ +R S +RT+LFVDEVHRFNKSQQD+FL
Sbjct: 61 AD--GFNAEFIALSAVLSGVKDIRDAVEHAKIIRSNSGRRTILFVDEVHRFNKSQQDAFL 118
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G FIGATTENPSF + LLSR V L L D+ LL RA+D++ L+
Sbjct: 119 PHVESGLFTFIGATTENPSFEVNNALLSRAAVYVLQSLGNDDLNTLLTRALDEILTDLT- 177
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR----VPVKEVKEVEQEDE 354
++ +A + L + DGDAR LN LEI+A A + + V +KE
Sbjct: 178 --------LSGEARDMLVMSADGDARKLLNNLEITAQAATTKKQAVIDVTLLKE------ 223
Query: 355 SDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
TL DA F D G+ Y+ ISALHKS+RG+ DAA+YW RM
Sbjct: 224 -----------TLGDAMRRF-------DNKGDHFYDQISALHKSVRGSHPDAALYWFTRM 265
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLA 474
L+GG P Y+ARR++R A ED+GLADP A A LG PE + LAQ V Y+A
Sbjct: 266 LDGGVDPRYLARRIIRMAWEDIGLADPRAAQIANEAALTYERLGSPEGELALAQAVIYMA 325
Query: 475 LAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--- 531
+A KS + Y A A+ +++ + VP+HLRNAPT+LMKE+GYG Y Y D+P
Sbjct: 326 IAAKSNAGYMAYNKARAFVKQDTSRE--VPVHLRNAPTRLMKELGYGHEYRYAHDEPNAY 383
Query: 532 SAKQSFLPPSLE 543
+A +++LP ++
Sbjct: 384 AAGETYLPDGMK 395
>gi|88798710|ref|ZP_01114293.1| hypothetical protein MED297_15939 [Reinekea blandensis MED297]
gi|88778473|gb|EAR09665.1| hypothetical protein MED297_15939 [Reinekea blandensis MED297]
Length = 439
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 261/432 (60%), Gaps = 37/432 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+E +RP + D +GQ H+L P LR + + L S+IFWGPPG GKTTLA I N
Sbjct: 11 YQPLAEVLRPQTLTDYIGQQHILGPGKPLRQTLENRNLHSMIFWGPPGVGKTTLANVISN 70
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+V +F LSAV +GVKD++ E A++ + + TVLFVDEVHRFNK+QQD+FLP
Sbjct: 71 TVEA--RFEVLSAVQAGVKDIKLVAEKAKQAQAYG-EVTVLFVDEVHRFNKAQQDAFLPY 127
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+ +FIGATTENPSF L + LLSR RV L D L +RA L + +
Sbjct: 128 VENGTFIFIGATTENPSFELNSALLSRARVYVLKSFTDDDFRQLWQRA-----RSLDERI 182
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++ + +DA++ L DGDAR LN LEI A+ E
Sbjct: 183 A--KLAIENDALDGLIQFADGDARRFLNFLEI-----AIDFFTSE--------------- 220
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
A++TLDD +E + +D+ GE Y+ ISA HKS+RG+ D A+YWL RML+GG
Sbjct: 221 --AVITLDDIRELLSHQPRRFDKGGENFYDQISAFHKSVRGSSPDGALYWLCRMLDGGID 278
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL A++ + + LG PE + LAQ YLA APKS
Sbjct: 279 PLYLARRMVRIASEDIGNADPRALTLALNAWDSQERLGSPEGELSLAQAAVYLASAPKSN 338
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A +R S + VPLHLRNAPT LMK++ YG+ Y Y D+P +A + +
Sbjct: 339 AVYTAFNAMMSAVRSS--HSAEVPLHLRNAPTSLMKDLDYGRDYRYAHDEPHAYAAGEVY 396
Query: 538 LPPSLEGYKFLD 549
LP ++G +F D
Sbjct: 397 LPDHMQGQRFYD 408
>gi|66823793|ref|XP_645251.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
gi|75009093|sp|Q75JU2.1|WRIP1_DICDI RecName: Full=ATPase WRNIP1; AltName: Full=Werner
helicase-interacting protein 1 homolog
gi|60473285|gb|EAL71231.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
Length = 876
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 193/436 (44%), Positives = 268/436 (61%), Gaps = 24/436 (5%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APLSE+MRP ++D +GQ+ LL + +++ S LPS I +GPPG GKTTLA+ + +
Sbjct: 195 APLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASK 254
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+Y LSAV SGVKD+++ ++ AR ++ K+T+LF+DE+HR+NK QQD LP I
Sbjct: 255 S--NYNINALSAVGSGVKDIKEVIDKARN-TLQFGKKTILFIDEIHRYNKLQQDVLLPAI 311
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L LLSRC+V + L ++E L+KR ++ ++ +
Sbjct: 312 ESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLE-----VTPLLM 366
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R+ ++ DAI+ L DGDARVA+N L++ A++ +E E+ +E S
Sbjct: 367 DRRLIMDEDAIKSLAEIADGDARVAINVLDM-----AIKANKEEQTYKERMEEKHSTSGI 421
Query: 362 VALVTLDDAKEA--FQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V + L + Q L YD+ G+ Y LISALHKS+RG+DA+A YW+ RMLE G
Sbjct: 422 VRDIVLTKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVRGSDANATAYWVIRMLESGC 481
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+PLYI RR+VR ASED+GLAD AL A++ YQA HF+GMPEC + QC YLA A KS
Sbjct: 482 EPLYIVRRMVRMASEDIGLADNSALPLAIAAYQAVHFVGMPECTNAILQCAVYLANAAKS 541
Query: 480 ISIYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYT---PDDPSAK 534
S RE + ++EG VP+HLRNAPTK+MK+ GYG Y Y D
Sbjct: 542 NSCDHWYAHT----REYLEKHEGPPVPIHLRNAPTKMMKDWGYGADYQYNHAFDDQSQVT 597
Query: 535 QSFLPPSLEGYKFLDW 550
Q +LP ++ KF ++
Sbjct: 598 QIYLPEPIKNEKFFEY 613
>gi|423016020|ref|ZP_17006741.1| recombination factor protein RarA [Achromobacter xylosoxidans
AXX-A]
gi|338781079|gb|EGP45475.1| recombination factor protein RarA [Achromobacter xylosoxidans
AXX-A]
Length = 446
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 195/439 (44%), Positives = 269/439 (61%), Gaps = 33/439 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP + DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRTLADVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGF--DAQFIAISAVLGGVKDIRDAVTVA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L P +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTPEELQRLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ N G + G R+ ++ DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 ITAFNEGHDE---GARILIDADAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D ++L ++L +D+ G+ Y+ ISALHKS+RG++ DAA
Sbjct: 227 AAGRDTVDAAWLEISL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSNPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW RM++GG P Y++RRLVR A ED+GLADP A + AV+ LG PE + LA
Sbjct: 276 LYWFCRMIDGGADPKYLSRRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A A+K E + VP+HLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNQARKFAAEH--GSAPVPIHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSLE 543
D+P +A + + P L+
Sbjct: 394 HDEPHGYAAGEQYFPDGLK 412
>gi|429738971|ref|ZP_19272744.1| ATPase, AAA family [Prevotella saccharolytica F0055]
gi|429158238|gb|EKY00798.1| ATPase, AAA family [Prevotella saccharolytica F0055]
Length = 425
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 199/426 (46%), Positives = 263/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D VGQ HL+ PN++LR+ + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 4 PLAERMRPRTLDDYVGQKHLVGPNAVLRNMIDVGRITSFILWGPPGVGKTTLAQIIANKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVREVIERAKSGRFFGSISPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV-DDVNNGLSKSVG 301
G + IGATTENPSF +I PLLSRC++ L PL D+E L +RA+ D+ L K
Sbjct: 122 KGVVTLIGATTENPSFEVIRPLLSRCQLYVLQPLSKDDLEELTQRAIRQDIE--LQKR-- 177
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + + F S GDAR LN LE+ E ESD
Sbjct: 178 --KITIKENGALFRFSG--GDARKLLNILELVV-----------------EAESDKTKEL 216
Query: 362 VALVTLDDAKEA--FQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V +DD A Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE
Sbjct: 217 V----IDDELVATRLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGE 272
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRL+ A+ED+GLA+P AL A + + A +G PE + LA+ V YLA +PKS
Sbjct: 273 DPQFIARRLIISAAEDIGLANPNALLIANAAFDAVMKIGWPEGRIPLAEAVVYLATSPKS 332
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y + A ++ +E+ N VPLHLRNAPT+LMK++GYG GY Y D P+ Q +
Sbjct: 333 NSAYMGINTALELAKET--GNLAVPLHLRNAPTQLMKQLGYGDGYKYAHDYPNHFVDQQY 390
Query: 538 LPPSLE 543
LP L+
Sbjct: 391 LPDELK 396
>gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 444
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 193/431 (44%), Positives = 272/431 (63%), Gaps = 28/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL++RMRP +++ VGQ H+L + LL A+ ++R+ S+IF+GPPGTGKTTLA I N
Sbjct: 15 NAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKADRVRSLIFYGPPGTGKTTLANIIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F L+AVTSGV D++ V +++ KRT+LF+DE+HRFNKSQQD+ LP
Sbjct: 75 TTKSS--FEKLNAVTSGVTDIKKIVNESKDRLSMYGKRTILFIDEIHRFNKSQQDALLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENP F +I PL+SR + L PL D++ ++ RA++D GL
Sbjct: 133 VEDGTIILIGATTENPYFEVIRPLVSRSMIFELYPLSNEDIKEIVLRALNDEKRGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++++ DA+ + + DGDAR ALNA+E++ +T + DE+
Sbjct: 189 GNEKIKITDDALNHIITYSDGDARAALNAIELAFLTT-------------ERDENG---- 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V + ++ A+E Q K L YD+ G+ HY+ ISA KSMRG+D DAA+YWLA+M+ GE
Sbjct: 232 -VINIDIEIAQECIQKKVLKYDKDGDNHYDSISAFIKSMRGSDPDAALYWLAKMIYAGED 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+IARR+V A+EDVG ADP ALN AVS QA + +GMPE +ILAQ Y+A APKS
Sbjct: 291 PLFIARRIVICAAEDVGNADPNALNIAVSAMQAVNQIGMPEGRIILAQAAIYVACAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S + +A I+ + VP HL++A K K + G GY Y D + KQ +L
Sbjct: 351 SSIIGIDSALDDIKNL--KTGAVPKHLQDAHYKGAKNLKRGVGYKYAHDFKNHYVKQQYL 408
Query: 539 PPSLEGYKFLD 549
P L G K+ +
Sbjct: 409 PEELIGKKYYN 419
>gi|387126554|ref|YP_006295159.1| Holliday junction DNA helicase [Methylophaga sp. JAM1]
gi|386273616|gb|AFI83514.1| Holliday junction DNA helicase [Methylophaga sp. JAM1]
Length = 440
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 267/423 (63%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++ + +GQ HLL+ LR A+ + + S+IFWGPPGTGKTTLA+ I
Sbjct: 14 PLADRMRPQSLEEYIGQQHLLAEGKPLRQAIATGQPHSMIFWGPPGTGKTTLARLIAGYC 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ +SAV +GVK+VR+AV A++L+ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 74 DA--EFISISAVLAGVKEVREAVARAKQLQQERGRRTMLFVDEVHRFNKSQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+ FIGATTENPSF L LLSR RV L L+ +D++++++RA+ D GL+ G
Sbjct: 132 DGTFTFIGATTENPSFELNNALLSRARVYVLKSLEINDLKLIIERAMQDGIRGLA----G 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ E L DGD R LN LEI+ + + + K+ + DE+
Sbjct: 188 RDIAMSDKLREQLAQAADGDGRRVLNLLEIA-------IDLADSKQQTEVDET------- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
D E +D+ GE Y+ ISALHKS+RG+ D A+YWL RML+GG P+
Sbjct: 234 ------DLAEVLSGTLRRFDKGGEAFYDQISALHKSVRGSSPDGALYWLCRMLDGGCDPV 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RR+VR A ED+G ADP L A+ +++ LG PE + +AQ V YLA A KS ++
Sbjct: 288 YLMRRIVRMAVEDIGNADPRGLRIALDAWESFDKLGRPEGELAIAQAVVYLASASKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R + G E VPLHLRNAPTKLMKE+ YGK Y Y D+P +A +++ P
Sbjct: 348 YTAFKAAMQDAR-NFGSAE-VPLHLRNAPTKLMKELDYGKEYRYAHDEPDAYAAGENYFP 405
Query: 540 PSL 542
++
Sbjct: 406 ETM 408
>gi|333030271|ref|ZP_08458332.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011]
gi|332740868|gb|EGJ71350.1| AAA ATPase central domain protein [Bacteroides coprosuis DSM 18011]
Length = 423
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 199/439 (45%), Positives = 273/439 (62%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++++ +GQ HL+ PN+ LR + R+ S I WGPPG GKTTLAK I + +
Sbjct: 3 PLAERLRPTSLDNYIGQQHLVGPNAPLRKMIEGGRISSFILWGPPGVGKTTLAKIISHQL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSAVTSGVKDVR+ ++ A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 DVP--FYTLSAVTSGVKDVREIIQKAKSNRFFNQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSR ++ L L D+ LL RA++ + + K
Sbjct: 121 QGVVTLIGATTENPSFEVIRPLLSRSQLYVLKSLGKEDLIQLLHRAIE--TDFILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ + + GDAR LN LE+ A ++ + P+
Sbjct: 176 KKIELKE--TDAMLRYSGGDARKLLNILELIATSSNIE-PI------------------- 213
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D + Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 214 -VITDDLVTNSLQQNPLAYDKGGELHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPK 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A SC+ A +G PE + LAQ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLMANSCFDAVQKIGWPEGRIPLAQATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A V+RES N VPLHLRNAPTKLMKE+GYG+ Y Y + ++ KQ++LP
Sbjct: 333 YAAINDAIAVVRES--GNLPVPLHLRNAPTKLMKELGYGEDYKYAHSYENNFVKQTYLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
++ + W P++N+ +K
Sbjct: 391 EIKNKRI--WHPQNNSAEK 407
>gi|110834153|ref|YP_693012.1| recombination factor protein RarA [Alcanivorax borkumensis SK2]
gi|110647264|emb|CAL16740.1| ATPase AAA family related to the helicase subunit of the Holliday
junction resolvase [Alcanivorax borkumensis SK2]
Length = 443
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 263/427 (61%), Gaps = 39/427 (9%)
Query: 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
R+RP ++D VGQ HL+ LR A+ +L S+I WGPPGTGKTTLA ++ + V
Sbjct: 19 RLRPTRLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPGTGKTTLA--LIMAQTVDA 76
Query: 187 KFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246
F+ LSAV SGVKD+R AVE A+ L + +RTVLFVDEVHRFNK+QQD+FLP +E+G+I
Sbjct: 77 AFITLSAVLSGVKDIRAAVEQAQIL-LGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTI 135
Query: 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD-VNNGLSKSVGGTRV 305
FIGATTENPSF L LLSR RV L L P D+ LL RA+ D NG+
Sbjct: 136 TFIGATTENPSFELNNALLSRARVYRLRALAPEDLSGLLVRALHDPALNGM--------- 186
Query: 306 EVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALV 365
+++ A E L + DGDAR LN LE++A A V VP +
Sbjct: 187 QLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPN---------------------I 225
Query: 366 TLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIA 425
D +E + +D+ G+ Y+ ISA+HKS+RG+D DAA+YW ARML+GG PLYIA
Sbjct: 226 GADLMREVLRDAVRRFDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYIA 285
Query: 426 RRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRA 485
RR+VR ASED+G ADP AL + + LG PE + +AQ +AYLA+APKS ++Y A
Sbjct: 286 RRVVRMASEDIGNADPRALTLCLQAWDVQERLGSPEGELTIAQAIAYLAVAPKSNAVYNA 345
Query: 486 LGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLPPSL 542
A+ ++R+ + VPLHLRNAPT+LMK+ G+G Y Y D P A +++ P SL
Sbjct: 346 YNQARALVRQQ--PTDEVPLHLRNAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFPASL 403
Query: 543 EGYKFLD 549
+ + +
Sbjct: 404 QDTRLYE 410
>gi|410028131|ref|ZP_11277967.1| AAA ATPase [Marinilabilia sp. AK2]
Length = 421
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 268/441 (60%), Gaps = 40/441 (9%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ PL+ERMRP + +++GQ+HL +P + L A+ S +PS+IFWGPPG GKTT+A I
Sbjct: 2 IDSTPLAERMRPSRLEELIGQEHLTAPTAFLYKAIKSGNVPSLIFWGPPGVGKTTIANII 61
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
N + V F LSA++SGVKD+R+ +E R K K VLF+DE+HRFNKSQQD+ L
Sbjct: 62 ANEIKVP--FYTLSAISSGVKDIREVIE-----RAKFQKGAVLFIDEIHRFNKSQQDALL 114
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E G I IGATTENPSF + LLSRC+V TLN L H++E +L++A ++K
Sbjct: 115 GAVEKGVIRLIGATTENPSFEVNAALLSRCQVYTLNSLGKHELEAMLQQA-------MNK 167
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
V + + E L GD R LN EI + + E D C
Sbjct: 168 DVELKKKRIELLETEALLRMSGGDGRKLLNLFEIV---------INGINE-------DSC 211
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
++T + + Q K YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGG
Sbjct: 212 -----IITNEKVVQIAQQKIALYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGG 266
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E +IARRLV ASED+G A+P AL A +C++A +G PE +IL+QCV YLA + K
Sbjct: 267 EDVKFIARRLVILASEDIGNANPNALLLATNCFEAVKMIGYPESRIILSQCVTYLASSAK 326
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQS 536
S + Y A+ AQ +++E+ + VPLHLRNAPTKLMK++ YGK Y Y D Q
Sbjct: 327 SNAAYMAINRAQALVKET--GDLPVPLHLRNAPTKLMKDLNYGKEYKYAHDYEQNFIAQE 384
Query: 537 FLPPSLEGYKFLDWPKSNTTD 557
F+P ++ K + P +N +
Sbjct: 385 FMPDDIKNTKLYE-PGNNARE 404
>gi|391331180|ref|XP_003740028.1| PREDICTED: ATPase WRNIP1-like [Metaseiulus occidentalis]
Length = 429
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 182/408 (44%), Positives = 251/408 (61%), Gaps = 24/408 (5%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+E MRP + + VGQ+ + +LLR + +PS+I WGPPG GKTTLA I
Sbjct: 17 PFKPLAEAMRPNTLQEYVGQEEAVGEKTLLRRLLDGPNVPSLILWGPPGCGKTTLAHIIA 76
Query: 180 NSV-AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
A ++FV LSAV + KDV+D V A+ + +T+LF+DE+HRFNK+QQD FL
Sbjct: 77 KKTQATGHRFVTLSAVAANTKDVKDVVSRAQTDQKMFKIKTILFLDEIHRFNKAQQDVFL 136
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL-- 296
P IE G+I IGATTENPSF L + LLSRC+V+ L L ++ +L RA + +
Sbjct: 137 PHIEKGTITLIGATTENPSFSLNSALLSRCKVIVLEKLSSENIRTILSRAASSLEVQILP 196
Query: 297 -SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
T + + A+ FL DGD+R ALN+L+ + V+ K++E+
Sbjct: 197 DDSPEQATGLAITDSALSFLVGISDGDSRTALNSLQTA---------VEGFKQLEKH--- 244
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
++T DD +++ + H YDR G++HY+ ISA HKSMR AA+Y+LARML
Sbjct: 245 --------VITKDDIRDSLKKTHFLYDRKGDQHYDTISAFHKSMRFGKDTAALYYLARML 296
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
GGE P +IARRL+ FASED+GLADP L+ A++ +QAC +GMPEC ++L+ C A
Sbjct: 297 SGGEDPRFIARRLIVFASEDIGLADPSMLSLAMATHQACEKIGMPECRIMLSHCTVQFAR 356
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKG 523
+PKS Y A G A+ IR+ G + VPL +RNAPTKLMKE+GY +G
Sbjct: 357 SPKSRETYNAYGRAEMFIRDFEGPHPPVPLAIRNAPTKLMKELGYAQG 404
>gi|359795943|ref|ZP_09298556.1| recombination factor protein RarA [Achromobacter arsenitoxydans
SY8]
gi|359366262|gb|EHK67946.1| recombination factor protein RarA [Achromobacter arsenitoxydans
SY8]
Length = 446
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 197/439 (44%), Positives = 268/439 (61%), Gaps = 33/439 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP + DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRTLADVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGF--DAQFIAISAVLGGVKDIRDAVTVA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTAEELQQLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V +N GL + G + V DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 VQALNEGLQE---GETIRVEPDAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D ++L ++L +D+ G+ Y+ ISALHKS+RG++ DAA
Sbjct: 227 AAGRDTVDAAWLEISL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSNPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW RM++GG P Y+ARRLVR A ED+GLADP A + AV+ LG PE + LA
Sbjct: 276 LYWFCRMIDGGADPKYLARRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A A+K E + VP+HLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNQARKFAAEH--GSAPVPIHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSLE 543
D+P +A + + P L+
Sbjct: 394 HDEPHGYAAGEQYFPDGLK 412
>gi|398802481|ref|ZP_10561690.1| AAA ATPase [Polaromonas sp. CF318]
gi|398099647|gb|EJL89900.1| AAA ATPase [Polaromonas sp. CF318]
Length = 433
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 196/435 (45%), Positives = 263/435 (60%), Gaps = 34/435 (7%)
Query: 116 ALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLA 175
A PH PL+ER+RP N+ +V+GQ HLL LR A S + S I WGPPG GKTT+A
Sbjct: 3 AASTPHQPLAERLRPQNLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTIA 62
Query: 176 KAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ + +S F+ +SAV GVKD+R+AVE A + + +RT++FVDEVHRFNKSQQD
Sbjct: 63 RLMASSF--DAHFITISAVLGGVKDIREAVEQASIWQAQGGRRTIVFVDEVHRFNKSQQD 120
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+FLP +E G FIGATTENPSF + + LLSR V L PL D LK+ VD V
Sbjct: 121 AFLPHVESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLGEAD----LKQIVDKV--- 173
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
L+++ ++ A++ L + DGDAR LN LE ++ A + ++
Sbjct: 174 LAENALPAITAIDAQAVDRLVTYADGDARRLLNTLESLSVAA-------------KAEKV 220
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
G + L L + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YW RML
Sbjct: 221 TGVTDAWLLKVLGE-------RLRRYDKGGEQFYDTISALHKSVRGSDPDAALYWFMRML 273
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
+GG +P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LAQCV YLA+
Sbjct: 274 DGGAEPRYMARRLVRMASEDIGLADPRALRMALDAAEVYERLGSPEGELALAQCVIYLAV 333
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---S 532
APKS ++Y+A A+ I + VPLHLRNAPTKLMK++ YGK Y Y D+ +
Sbjct: 334 APKSNAVYKAFNEAKAFIAKD--GTRPVPLHLRNAPTKLMKQLDYGKNYRYAHDEEDGFA 391
Query: 533 AKQSFLPPSLEGYKF 547
A +++ P + F
Sbjct: 392 AGENYFPEGMRAPGF 406
>gi|90415910|ref|ZP_01223843.1| hypothetical protein GB2207_01717 [gamma proteobacterium HTCC2207]
gi|90332284|gb|EAS47481.1| hypothetical protein GB2207_01717 [gamma proteobacterium HTCC2207]
Length = 443
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 267/432 (61%), Gaps = 34/432 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP ++ GQ+HL+ LR A+ L S+IFWGPPG GKTTLAK I
Sbjct: 11 YRPLAARMRPATLDGFYGQEHLIGLGKPLREAIEGGTLHSMIFWGPPGVGKTTLAKIIAA 70
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S F +SAV SGVK++R ++ A + R ++T+LFVDEVHRFNKSQQD+FLP
Sbjct: 71 SADA--HFESISAVLSGVKEIRASIAKATEQRDLRGRKTILFVDEVHRFNKSQQDAFLPF 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++VFIGATTENPSF L LLSRCRV L L ++ ++++A+ D +GL
Sbjct: 129 VEDGTVVFIGATTENPSFELNNALLSRCRVYVLKSLDNEQIKTVIQQALSDQQSGL---- 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEV--KEVEQEDESDGC 358
G +++++ +A++ L S DGDAR ALN LEI+ A+ + + + +EQ
Sbjct: 185 GERQLQLDDEALDLLASAADGDARRALNLLEIANDLASESGDLAAIDRRVLEQ------- 237
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
V + D + +D+ GE Y+ ISA+HKS+RG+ DAA+YWL RML+GG
Sbjct: 238 ------VLVGDTRR--------FDKGGEYFYDQISAMHKSVRGSSPDAALYWLCRMLDGG 283
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P+YIARRLVR ASED+G ADP AL A+S + LG PE + LAQ V YLA+A K
Sbjct: 284 CDPIYIARRLVRMASEDIGNADPRALELAMSAWDVQERLGSPEGELALAQAVVYLAVAAK 343
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQ 535
S ++Y A A +R S+ E VP+HLRNAPT LMK++ YGK Y Y ++ +
Sbjct: 344 SNAVYSAFNATMADVR-SLPSYE-VPMHLRNAPTNLMKDLDYGKDYRYAHNEEGGYAPGE 401
Query: 536 SFLPPSLEGYKF 547
S+LP L G +
Sbjct: 402 SYLPEELGGKTY 413
>gi|387130595|ref|YP_006293485.1| Holliday junction DNA helicase [Methylophaga sp. JAM7]
gi|386271884|gb|AFJ02798.1| Holliday junction DNA helicase [Methylophaga sp. JAM7]
Length = 443
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 197/423 (46%), Positives = 259/423 (61%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP +++D +GQ HLL+ LR A+ S + S+IFWGPPGTGKTTLA+ I
Sbjct: 14 PLADRMRPQSLDDYIGQSHLLAAGKPLRQAIASGQPHSMIFWGPPGTGKTTLARLIAGYC 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ +SAV +GVK+VR+AV A+ L + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 74 DA--EFITISAVLAGVKEVREAVARAKLLAQERGRRTMLFVDEVHRFNKSQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+ FIGATTENPSF L LLSR RV L L+ D+ ++ RA+ D G+ K V
Sbjct: 132 DGTFTFIGATTENPSFELNNALLSRARVYVLKSLETEDLRQIVDRALAD---GI-KGVAA 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + + L DGD R LN LEI+ A +S G
Sbjct: 188 RNVTMAEPLRDLLAEAADGDGRRVLNLLEIAIDLA----------------DSQGQQA-- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT D +D+ GE Y+ ISALHKS+RG+ DAA+YWL RML+GG P+
Sbjct: 230 --VTEADMTSVLSGSFRRFDKGGEAFYDQISALHKSVRGSAPDAALYWLCRMLDGGCDPV 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RR+VR A+ED+G ADP L ++ + + LG PE + +AQ V YLA APKS ++
Sbjct: 288 YLMRRIVRMATEDIGNADPRGLEITLNAWDSFEKLGRPEGELAIAQAVVYLACAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + +R G E VPLHLRNAPTKLMKE+ YGK Y Y D+P +A +++ P
Sbjct: 348 YNAFKAAMQDVRNH-GSAE-VPLHLRNAPTKLMKELDYGKAYRYAHDEPEAYAAGETYFP 405
Query: 540 PSL 542
SL
Sbjct: 406 ESL 408
>gi|240948710|ref|ZP_04753082.1| recombination factor protein RarA [Actinobacillus minor NM305]
gi|240296926|gb|EER47504.1| recombination factor protein RarA [Actinobacillus minor NM305]
Length = 444
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 194/432 (44%), Positives = 271/432 (62%), Gaps = 39/432 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLS RMRP N+++ +GQ HL+ LR A+ S S+IFWGPPGTGKTTLA+ I
Sbjct: 14 PLSARMRPRNLSEYIGQHHLIGEGKPLRRAIESKHPHSMIFWGPPGTGKTTLAEII---- 69
Query: 183 AVSYKFVC----LSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+Y F LSAVTSG+K++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FL
Sbjct: 70 --AYHFDADVERLSAVTSGIKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFL 126
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P IEDG+I+FIGATTENPSF L LLSR RV L PL+P DV ++L+ A++D GL
Sbjct: 127 PYIEDGTIIFIGATTENPSFELNNALLSRARVYILKPLQPADVLVVLQNALNDKTRGL-- 184
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G ++ + + + L +GDAR ALN LE ++ ++ + E+
Sbjct: 185 --GAEKIILKDNVLNLLADYVNGDARYALNCLE-------------QMSDMATQTEAG-- 227
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
L L+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G
Sbjct: 228 ----KLFDLNLLTEILGERLARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAG 283
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
PLY+ARRL+ ASED+G ADP A+ A+S + +G E +AQ V YLA+APK
Sbjct: 284 GDPLYVARRLLAIASEDIGNADPRAMQVALSAWDCYTRVGAYEGERAIAQAVIYLAVAPK 343
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S ++Y A A+++ +E+ ++ VP HLRNAPT LMK +GYG+ Y Y + +A +
Sbjct: 344 SNAVYTAFNEAKRLAKEA--KDYDVPEHLRNAPTHLMKTLGYGEEYRYAHHEEHAYAAGE 401
Query: 536 SFLPPSLEGYKF 547
++ PP L+ +F
Sbjct: 402 NYFPPELKDTQF 413
>gi|345302188|ref|YP_004824090.1| AAA ATPase central domain-containing protein [Rhodothermus marinus
SG0.5JP17-172]
gi|345111421|gb|AEN72253.1| AAA ATPase central domain protein [Rhodothermus marinus
SG0.5JP17-172]
Length = 458
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 190/431 (44%), Positives = 270/431 (62%), Gaps = 30/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ERMRP +++ VGQ+H+L P LLR A+ ++RL S+IF+GPPGTGKTTLA+ I
Sbjct: 16 QAPLAERMRPRTLDEFVGQEHILGPGKLLRRAIEADRLSSLIFYGPPGTGKTTLARIIAR 75
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F L+AV +GVKD+RDA+E A++ +RT+LF+DEVHRFNK+QQD+ LP
Sbjct: 76 TTRA--HFTALNAVLAGVKDIRDAIEAAQERLRLHQQRTILFIDEVHRFNKAQQDALLPH 133
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+++FIGATTENP F +I PL+SR RV L PL P + + ++A+ D G
Sbjct: 134 VENGTVIFIGATTENPYFEVIKPLVSRSRVFELKPLTPEHLRRIAEQALTDPERG----Y 189
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G V V+ +A++ L +GDAR LNALE++ T P + +
Sbjct: 190 GRRNVVVDPEALDHLIDVANGDARSLLNALELAVET----TPPDASRRIH---------- 235
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+TL A+E+ Q + + YD+ G+ H++ ISA KS+RG+D DAA+YWLARM+ GE
Sbjct: 236 ----ITLPVAEESIQRRAVLYDKEGDVHFDTISAFIKSLRGSDPDAALYWLARMIYAGED 291
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +I RR++ FA+EDVGLADP AL A + QA ++GMPE ILA+C YLA APKS
Sbjct: 292 PRFILRRMLIFAAEDVGLADPRALQVATAAAQAFDYVGMPEGQFILAECCLYLATAPKSN 351
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S A V RE G+ VP HL++A ++ + +G+G+GY Y + Q +L
Sbjct: 352 STMAYFNALAYVEREQSGE---VPTHLKDA-SRDRQGLGHGQGYKYPHAYREHYVPQQYL 407
Query: 539 PPSLEGYKFLD 549
P ++G F +
Sbjct: 408 PEHMQGTYFYE 418
>gi|167745397|ref|ZP_02417524.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
gi|167655118|gb|EDR99247.1| recombination factor protein RarA [Anaerostipes caccae DSM 14662]
Length = 439
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 278/440 (63%), Gaps = 29/440 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ RMRP +++VVGQ+H++ + LL A+ +++L SIIF+GPPGTGKTTLA+ I
Sbjct: 15 EAPLAGRMRPKTLDEVVGQEHIIGKDKLLYRAIQADKLSSIIFYGPPGTGKTTLARVIAQ 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ + FV ++A TSG K++++AV++A++ K+T+LF+DE+HRFNK+QQD LP
Sbjct: 75 TTQAN--FVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEIHRFNKAQQDFLLPF 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENP F + L+SR V L L+P D++ LL RAV D G+
Sbjct: 133 VEDGTIILIGATTENPYFEVNQALISRSNVFELKSLEPEDIKKLLVRAVTDDEKGM---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G R ++ +A++FL +GDAR ALNA+E+ +T E +G
Sbjct: 189 GIYRAKITDEALDFLADMAEGDARSALNAVELGILTT--------------EPGENGE-- 232
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ ++ A+E Q + + YD+ G+ HY++ISA KSMRG+D DAA+Y+LARM++ GE
Sbjct: 233 --IVIDINVAQECIQKRVMRYDKGGDNHYDIISAFIKSMRGSDPDAAVYYLARMIDAGES 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+I+RR++ ASEDVG ADP AL AV+ QA +G+PE +ILAQ V Y+A APKS
Sbjct: 291 VTFISRRIMICASEDVGNADPQALQVAVAASQAVERIGLPEARIILAQAVTYVAGAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y A+ A + +R+ +N VP HLR+A K ++G G GY Y + P KQ +L
Sbjct: 351 AAYMAVNQALEAVRKR--KNGMVPNHLRDASYKGASKLGRGIGYQYAHNFPGHYVKQQYL 408
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L G F + P N +K
Sbjct: 409 PDELLGTVFYE-PTENGYEK 427
>gi|330993252|ref|ZP_08317188.1| Replication-associated recombination protein A [Gluconacetobacter
sp. SXCC-1]
gi|329759654|gb|EGG76162.1| Replication-associated recombination protein A [Gluconacetobacter
sp. SXCC-1]
Length = 463
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 196/423 (46%), Positives = 257/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++DVVGQDHLL P LR + L S+I WG PG GKTT+A+ + +
Sbjct: 45 PLADRLRPATLDDVVGQDHLLGPQGSLRQMLARGSLASLILWGGPGVGKTTIARLLAD-- 102
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +FV LSAV SGV D++ A EDAR+ + T+LFVDE+HRFN++QQD FLPV+E
Sbjct: 103 AAGLRFVQLSAVFSGVADLKRAFEDARRTSAQGGG-TLLFVDEIHRFNRAQQDGFLPVVE 161
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L + LLSRC+VL L+ L +E LL+RA + G
Sbjct: 162 DGTVVLVGATTENPSFALNSALLSRCQVLVLHRLDDAAMEKLLERA---------EETTG 212
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T + + +A L + DGD R LN +E + P+
Sbjct: 213 TALPLTPEARATLRAMADGDGRYLLNMVEQLLALPPQKAPLDPA---------------- 256
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL TL + A YD+ EEHYNLISALHKSMRG+D DAA+YW ARMLEGGE P
Sbjct: 257 ALSTLLARRAAL------YDKDREEHYNLISALHKSMRGSDPDAALYWFARMLEGGEDPR 310
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG+ADP AL AV+ ++ LG PE + LAQ V +LA APKS ++
Sbjct: 311 YIARRLTRFAAEDVGMADPHALPLAVAAWETFERLGSPEGELALAQLVVHLATAPKSNAV 370
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+ A++ R + P H+ NAPT LMK+IGYG+GY Y D + Q++ P
Sbjct: 371 YKGYNMARRAARATGSLMP--PAHILNAPTTLMKDIGYGRGYEYDHDAEGGISGQNYFPD 428
Query: 541 SLE 543
+
Sbjct: 429 GMR 431
>gi|78186607|ref|YP_374650.1| recombination factor protein RarA [Chlorobium luteolum DSM 273]
gi|78166509|gb|ABB23607.1| Recombination protein MgsA [Chlorobium luteolum DSM 273]
Length = 457
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 200/423 (47%), Positives = 262/423 (61%), Gaps = 33/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +I+++ GQ+HL+ P LR + +LPS+IFWGPPG+GKTTLA+ + +
Sbjct: 26 PLAERVRPQSIDEMAGQEHLVGPMGPLRRFLGGGQLPSMIFWGPPGSGKTTLAE--ICAS 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A+ ++F LSA+ SGVKDVR +E+A R + RT+LF+DE+HRFNKSQQD+ L IE
Sbjct: 84 ALDFRFEQLSAIESGVKDVRRVLENAASSRAR-GIRTLLFIDEIHRFNKSQQDTLLHAIE 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G +V IGATTENPSF + LLSR +V TL L P D+ +++ RA LS
Sbjct: 143 QGVVVLIGATTENPSFEINAALLSRMQVYTLKSLGPEDIRLVVTRA-------LSVDPLF 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + +EFL GDAR ALNALE + + A E ED
Sbjct: 196 RDRHVQVEDMEFLLRFSGGDARKALNALEAAFLLIA-----------EDEDP-------- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ D + A Q + YD GE HYN +SA KSMRG+D DAA++WLARM+EGGE P
Sbjct: 237 ALIGRDLLERALQHRAPIYDHGGEAHYNTVSAFIKSMRGSDPDAALFWLARMIEGGEDPR 296
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV FASED+G ADP A+ AVS +QA +GMPE + LAQ V YLA PKS +
Sbjct: 297 FIARRLVIFASEDIGNADPYAITLAVSVFQAVTLIGMPEARINLAQGVTYLASCPKSNAS 356
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ Q + + Q+ VP HL NAPTK MK+ GYG GY Y D P+ ++ + P
Sbjct: 357 YIAVN--QALAESASLQDLAVPKHLCNAPTKFMKQEGYGAGYRYPHDFPNHFVRERYFPD 414
Query: 541 SLE 543
+E
Sbjct: 415 GME 417
>gi|239616608|ref|YP_002939930.1| recombination factor protein RarA [Kosmotoga olearia TBF 19.5.1]
gi|239505439|gb|ACR78926.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 427
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 269/438 (61%), Gaps = 31/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLSER+RP N +D+VGQ+HL N ++R AV S + S+I +GPPG+GKTT+A+ I S+
Sbjct: 2 PLSERLRPRNFDDLVGQEHLTGKNGIIRRAVESGYVFSMILFGPPGSGKTTIARLIKESL 61
Query: 183 AV-SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A Y+FV SA G D++ E AR+LR K K VLFVDE+HR NK+QQD FLPV+
Sbjct: 62 ADDKYEFVAFSASLQGTADLKKIFERARQLR-KYGKHLVLFVDEIHRLNKTQQDVFLPVV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG++ IGATTENPSF + LLSRCR+L L L P D LL RA++ + +
Sbjct: 121 EDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDTVQLLHRALEK-----DERLS 175
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ + I L N GDARVALN LE AA + KE+
Sbjct: 176 SLDIAISEELIRILAENAGGDARVALNFLETLYENAAA-MGYKEL--------------- 219
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+D E H Y +AGEEHY+LISA KSMRG+D DAA+Y++ RM+E GE P
Sbjct: 220 ----NVDILDELPIISHKRYRKAGEEHYDLISAFIKSMRGSDPDAAVYYMMRMIEAGEDP 275
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR+V ASED+GLADP+AL AV+ +QA +G+PEC + L++ YL++A KS S
Sbjct: 276 KFIARRMVILASEDIGLADPMALLVAVAAFQAVERVGLPECTLNLSEAAIYLSVASKSNS 335
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DPSAKQSFLPP 540
+Y A AAQ+VI++ N VPL LRN T +MK++GYGK Y Y D +++ +LP
Sbjct: 336 VYLAQKAAQEVIKKH--PNLEVPLKLRNPVTDMMKKMGYGKDYNYPHDFGGFSRELYLPD 393
Query: 541 SLEGYKFLDWPKSNTTDK 558
++ F P N +K
Sbjct: 394 KIKNMVFYK-PTENGREK 410
>gi|371777605|ref|ZP_09483927.1| recombination factor protein RarA [Anaerophaga sp. HS1]
Length = 425
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/436 (43%), Positives = 268/436 (61%), Gaps = 34/436 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP ++ +GQ HL+ ++L V S RL SII WGPPG GKTTLA+ I N
Sbjct: 4 YPPLAERMRPRTLDQYIGQKHLVGQGAVLYQMVASGRLSSIILWGPPGVGKTTLARIIAN 63
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSAV+SGVKDVR+A+E A+ R + +LF+DE+HRF+KSQQDS L
Sbjct: 64 QL--KRPFFVLSAVSSGVKDVREAIEKAKNARFFNADSPILFIDEIHRFSKSQQDSLLGA 121
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G++ IGATTENPSF +I+PLLSRC+V L PLK ++ +L +R + +
Sbjct: 122 VEEGTVTLIGATTENPSFEVISPLLSRCQVYVLEPLKNEELMVLFERICKE-----DPVL 176
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++E+ D E L GDAR LN +E+ + +D+
Sbjct: 177 KKRKIELKED--EALFRFAGGDARKFLNIIEL-------------ISNSFNDDD------ 215
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V +T ++ Q YD+ GE HY++ISA KS+RG+D DAA+YWLARM+EGGE
Sbjct: 216 -VIEITNENVTRHLQQNPAQYDKNGEIHYDIISAFIKSIRGSDPDAAVYWLARMVEGGED 274
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRL+ A+ED+GLA+P AL A + ++A +G PE +IL++ YLA +PKS
Sbjct: 275 PKFIARRLIISAAEDIGLANPNALLLATNAFEAIQMVGWPEARIILSEVTIYLATSPKSN 334
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+ AQ+ ++++ N VPLHLRNAPTKLMKE+ YGK Y Y D D Q +L
Sbjct: 335 SAYMAINKAQETVKKT--GNLPVPLHLRNAPTKLMKELNYGKEYKYAHDYTDNFVIQDYL 392
Query: 539 PPSLEGYKFLDWPKSN 554
P ++ + +P++N
Sbjct: 393 PEKIKDTRLF-FPQNN 407
>gi|359452657|ref|ZP_09241998.1| replication-associated recombination protein A [Pseudoalteromonas
sp. BSi20495]
gi|358050209|dbj|GAA78247.1| replication-associated recombination protein A [Pseudoalteromonas
sp. BSi20495]
Length = 400
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 186/401 (46%), Positives = 256/401 (63%), Gaps = 30/401 (7%)
Query: 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDA 208
+R + + + S+IFWG PG GKTTLA+ I S + + SAVTSG+KD++ +E+A
Sbjct: 1 MRDMIELDSISSMIFWGAPGIGKTTLAEIIAKSTKA--RIISFSAVTSGIKDIKKIMEEA 58
Query: 209 RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRC 268
R + ++T++FVDE+HRFNK+QQD+FLP +E GSI+ IGATTENPSF + LLSR
Sbjct: 59 ELTR-QIGQKTLVFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNAALLSRA 117
Query: 269 RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+V L L D+ LL R + S+ + V+ + D + + + +GDAR ALN
Sbjct: 118 KVFVLESLSSSDIMTLLTRTLTS-----SQGLAEYDVKYDDDTLLAIANFANGDARTALN 172
Query: 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEH 388
LE++ I + E+ G ++ + + K + YD+ GEEH
Sbjct: 173 TLEMAVING-------------DKIENGGI-----IIRQEHLYDLLNRKSMLYDKNGEEH 214
Query: 389 YNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAV 448
YN++SALHKSMR +D D+AIYWLARMLEGGE P+YIARRL+RFASED+GLAD ALN AV
Sbjct: 215 YNIVSALHKSMRNSDVDSAIYWLARMLEGGEDPVYIARRLIRFASEDIGLADCNALNLAV 274
Query: 449 SCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLR 508
+ +++C LGMPEC+V L Q V YL+LAPKS +IY+A K I+ + E VPLHLR
Sbjct: 275 NVFKSCQMLGMPECDVHLTQAVTYLSLAPKSNAIYQARVKVVKDIKNA--PCEPVPLHLR 332
Query: 509 NAPTKLMKEIGYGKGY--IYTPDDPSAKQSFLPPSLEGYKF 547
NAPTKLMKEIG+GKGY + D + +P +L G+++
Sbjct: 333 NAPTKLMKEIGFGKGYKLAHHYTDKTTTMQTMPNALLGHRY 373
>gi|87308504|ref|ZP_01090644.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
3645]
gi|87288596|gb|EAQ80490.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
3645]
Length = 461
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 266/426 (62%), Gaps = 31/426 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + + GQ H L LLR + ++RL S++F+GPPGTGKTTLA+ +
Sbjct: 29 PLAARMRPHTLAEFAGQTHFLGEGKLLRRLIQADRLNSVLFYGPPGTGKTTLAQLLAREC 88
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F L+AVTSGVK++R+ ++ A+ +RT+LF+DE+HRFNKSQQD+ LP +E
Sbjct: 89 --RSRFEQLNAVTSGVKELREVLQKAKDEIAVGGRRTLLFIDEIHRFNKSQQDALLPDVE 146
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G ++ +GATT NP F + + L+SR +V PL P D++ L+ RA+ D + GL G
Sbjct: 147 NGVVILVGATTSNPFFAVNSALVSRSQVFQFQPLSPDDIKQLIHRALADKSVGL----GD 202
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V ++ DA+ FL DGDAR ALNALEI +++ R PV+ +E+
Sbjct: 203 IPVNIHEDALHFLAEVSDGDARRALNALEIGVLSSKER-PVEFTQEL------------- 248
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A E+ Q K + YDR G+ HY+ SAL KS+RG+D DAA+YWLARMLEGGE
Sbjct: 249 -------AAESVQRKAVQYDRDGDSHYDAASALIKSIRGSDPDAALYWLARMLEGGEDVR 301
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ RRLV ASEDVG ADP AL AVS QAC F+G+PEC + L+Q VAYLA APKS +
Sbjct: 302 FLTRRLVILASEDVGNADPNALTLAVSAMQACEFIGLPECQLTLSQTVAYLACAPKSNAA 361
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
A+G A + +RE G+ VP+HLR+A + K +G+G Y Y DD A Q +L
Sbjct: 362 TIAIGEAVQDVRE--GRLIPVPVHLRDAHYQGAKTLGHGADYQYAHNADDGVAAQDYLGV 419
Query: 541 SLEGYK 546
E Y+
Sbjct: 420 DREYYR 425
>gi|365874841|ref|ZP_09414373.1| ATPase, AAA family protein [Elizabethkingia anophelis Ag1]
gi|442588931|ref|ZP_21007740.1| ATPase AAA [Elizabethkingia anophelis R26]
gi|365757614|gb|EHM99521.1| ATPase, AAA family protein [Elizabethkingia anophelis Ag1]
gi|442561169|gb|ELR78395.1| ATPase AAA [Elizabethkingia anophelis R26]
Length = 426
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 197/438 (44%), Positives = 270/438 (61%), Gaps = 34/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E++RP N+++V+GQ+HL PN +R V + L SIIFWGPPGTGKTTL++ I S
Sbjct: 6 PLAEKLRPKNLDEVIGQEHLTGPNGPIRKMVEHDTLNSIIFWGPPGTGKTTLSEII--SE 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF LSAV+SGVKDVR+ ++ A++ + S K +LF+DE+HRFNKSQQDS L +E
Sbjct: 64 NSGRKFFKLSAVSSGVKDVREVIDQAKQQNLFSGKSPILFIDEIHRFNKSQQDSLLHAVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF +++ LLSR +V L L +E L AV+ N G
Sbjct: 124 KGWIVLIGATTENPSFEVVSALLSRSQVYVLKALDYEKLEGLADVAVERYNKD-----SG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T+ + A GDAR +N++EI V K+ E E+E
Sbjct: 179 TKFSLKDKAA--FIQYSGGDARKLINSVEI------VLNQFLHSKKTEIENE-------- 222
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
D Q YD+ GE+HY++ISA KS+RG+D + A+YWLARML GGE
Sbjct: 223 ------DVLSVLQESMALYDKNGEQHYDIISAFIKSIRGSDPNGAVYWLARMLVGGEDIK 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++ ASED+GLA+P AL A +C+QA + +G PE ++L++C YLA++PKS S
Sbjct: 277 FIARRMLISASEDIGLANPNALVMANNCFQAINVIGNPEARILLSECAVYLAVSPKSNSA 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++++ N VPLHLRNAPTKLMKE+ YGK Y Y + + Q FLP
Sbjct: 337 YMAINDAMSLVKQT--GNLPVPLHLRNAPTKLMKEMDYGKEYKYAHSYEGSFVDQEFLPE 394
Query: 541 SLEGYKFLDWPKSNTTDK 558
+ G KF + P +N+T+K
Sbjct: 395 EISGTKFYN-PGNNSTEK 411
>gi|239814294|ref|YP_002943204.1| recombination factor protein RarA [Variovorax paradoxus S110]
gi|239800871|gb|ACS17938.1| AAA ATPase central domain protein [Variovorax paradoxus S110]
Length = 430
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 196/431 (45%), Positives = 261/431 (60%), Gaps = 38/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ HLL P LR A S + S I WGPPGTGKTT+A+ + +
Sbjct: 6 HQPLAERLRPKTLGEVIGQQHLLGPGMPLRIAFESGQPHSCILWGPPGTGKTTIARLMAD 65
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+RDAVE A R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 66 --AFDAQFLSISAVLGGVKDIRDAVERATAARDGLEQRRTIVFVDEVHRFNKSQQDAFLP 123
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF + + LLSR V L PL D++ ++ +A ++
Sbjct: 124 HVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLTEADLKQIVAKAQ------AIQA 177
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
V G + AI+ L + DGDAR LN LE A+ A +
Sbjct: 178 VPG----IEDTAIDRLVAYADGDARRLLNTLETLAVAAR--------------------A 213
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ +T + + YD+ GE+ Y+ ISALHKS+RG+D DA++YW RML+GG
Sbjct: 214 EKLGHITDEWLLRVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDASLYWFVRMLDGGA 273
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APKS
Sbjct: 274 DPRYMARRLVRMASEDIGLADPRALRLALDAAEVYERLGTPEGELALAECVVYLAMAPKS 333
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A A + +I++ VP+HLRNAPTKLMK++ YGKGY Y D+ +A +
Sbjct: 334 NAVYTAYNAVRALIKKD--STRPVPMHLRNAPTKLMKDLDYGKGYRYAHDEEGGFAAGER 391
Query: 537 FLPPSLEGYKF 547
+LP LEG F
Sbjct: 392 YLPDGLEGQVF 402
>gi|343517634|ref|ZP_08754631.1| recombination factor protein RarA [Haemophilus pittmaniae HK 85]
gi|343395070|gb|EGV07615.1| recombination factor protein RarA [Haemophilus pittmaniae HK 85]
Length = 445
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 269/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++++ GQ HLL+P LR A+ + + S+I WGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPNDLSNYFGQSHLLAPGKPLRRAIEAGHVHSMILWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVT G+K++RDA+E A++ R+ + ++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTGGIKEIRDAIERAKQNRL-AGRQTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ +L+RA+ D GL G
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTAAEIREVLQRALHDKERGL----GN 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + L +GDAR+ALN LE+ A E ++DG
Sbjct: 188 EPLILQREVLTLLADYVNGDARLALNCLELMCDMA--------------EQQADGKHLTP 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 ELLT-----EVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+++ RES + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YNAFNAAKRLARESADFD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L +F
Sbjct: 407 PQLAHTQF 414
>gi|10198155|gb|AAG15220.1|AF288461_6 unknown [Chloroflexus aurantiacus]
Length = 377
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/370 (48%), Positives = 243/370 (65%), Gaps = 24/370 (6%)
Query: 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
RMRP + + VGQ HL+ LLR A+ +++L S+I WGPPG+GKTTLA+ I +S
Sbjct: 28 RMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIAHSTKA-- 85
Query: 187 KFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246
F +SAV++GV D+R V++A+ +RTV+F+DE+HRFNKSQQD+ LP +EDG+I
Sbjct: 86 HFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTI 145
Query: 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVE 306
+ IGATTENPSF + + LLSR RV L L ++ +L+ RA+ D GL G ++
Sbjct: 146 ILIGATTENPSFEVNSALLSRARVFKLEALTDEEIGVLIDRALTDRERGL----GDLKIM 201
Query: 307 VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVT 366
+ DA ++L + +GDAR ALNALE AA R + E L+T
Sbjct: 202 LARDARDYLVNMANGDARTALNALE-----AAARSKPPAIGETR-------------LIT 243
Query: 367 LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIAR 426
+DD ++A Q + + YD+ GE HY+ ISALHKS+R +D D A+YWL RML+GGE PLYIAR
Sbjct: 244 VDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLYIAR 303
Query: 427 RLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRAL 486
RLVR A ED+GLADP AL Q ++ QA HFLG PE + LAQ V YL LAPKS ++YRA
Sbjct: 304 RLVRIAVEDIGLADPQALPQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALYRAY 363
Query: 487 GAAQKVIRES 496
GA Q+ + E+
Sbjct: 364 GAVQRDVAET 373
>gi|347761704|ref|YP_004869265.1| ATPase AAA [Gluconacetobacter xylinus NBRC 3288]
gi|347580674|dbj|BAK84895.1| AAA ATPase [Gluconacetobacter xylinus NBRC 3288]
Length = 462
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 200/423 (47%), Positives = 259/423 (61%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++DVVGQDHLL PN LR + L S+I WG PG GKTT+A+ + N
Sbjct: 44 PLADRLRPATLDDVVGQDHLLGPNGSLRQMLARGSLASLILWGGPGVGKTTIARLLAN-- 101
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +FV LSAV SGV D++ A EDAR+ S T+LFVDE+HRFN++QQD FLPV+E
Sbjct: 102 AAGLRFVQLSAVFSGVADLKRAFEDARRTSA-SGGGTLLFVDEIHRFNRAQQDGFLPVVE 160
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L + LLSRC+VL L+ L +E LL+RA ++ G
Sbjct: 161 DGTVVLVGATTENPSFALNSALLSRCQVLVLHRLDDAAMEKLLERA---------ETTTG 211
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T + + +A L + DGD R LN +E + P+ +
Sbjct: 212 TPLPLTPEARATLRAMADGDGRYLLNMVEQLLALPPQKAPLDPAR--------------- 256
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L TL + A YD+ EEHYNLISALHKSMRG+D DAA+YW ARMLEGGE P
Sbjct: 257 -LSTLLARRAAL------YDKDREEHYNLISALHKSMRGSDPDAALYWFARMLEGGEDPR 309
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG+ADP AL AV+ ++ LG PE + LAQ V +LA APKS ++
Sbjct: 310 YIARRLTRFAAEDVGMADPHALPLAVAAWETFERLGSPEGELALAQLVVHLATAPKSNAV 369
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+ A+K R + P H+ NAPT LMK+IGYGKGY Y D + Q++ P
Sbjct: 370 YKGYNMARKAARATGSLMP--PAHILNAPTTLMKDIGYGKGYEYDHDAQGGISGQNYFPD 427
Query: 541 SLE 543
+
Sbjct: 428 GMR 430
>gi|317473057|ref|ZP_07932357.1| ATPase [Anaerostipes sp. 3_2_56FAA]
gi|316899486|gb|EFV21500.1| ATPase [Anaerostipes sp. 3_2_56FAA]
Length = 439
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 278/440 (63%), Gaps = 29/440 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ RMRP +++VVGQ+H++ + LL A+ +++L SIIF+GPPGTGKTTLA+ I
Sbjct: 15 EAPLAGRMRPKTLDEVVGQEHIIGKDKLLYRAIQADKLSSIIFYGPPGTGKTTLARVIAQ 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ + FV ++A TSG K++++AV++A++ K+T+LF+DE+HRFNK+QQD LP
Sbjct: 75 TTQAN--FVQMNATTSGKKEMQEAVKEAKEALGMFQKKTILFIDEIHRFNKAQQDFLLPF 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENP F + L+SR V L L+P D++ LL RAV D G+
Sbjct: 133 VEDGTIILIGATTENPYFEVNQALISRSNVFELKSLEPEDIKKLLVRAVTDDEKGM---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G R ++ +A++FL +GDAR ALNA+E+ +T E DG
Sbjct: 189 GIYRAKITDEALDFLADMAEGDARSALNAVELGILTT--------------EPGEDGE-- 232
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ ++ A+E Q + + YD+ G+ HY++ISA KSMRG+D DAA+Y+LARM++ GE
Sbjct: 233 --IVIDINVAQECIQKRVMRYDKGGDNHYDIISAFIKSMRGSDPDAAVYYLARMIDAGES 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+I+RR++ ASEDVG ADP AL AV+ QA +G+PE +ILAQ V Y+A APKS
Sbjct: 291 VTFISRRIMICASEDVGNADPQALQVAVAASQAVERIGLPEARIILAQAVTYVAGAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y A+ A + +R+ +N VP HLR++ K ++G G GY Y + P KQ +L
Sbjct: 351 AAYMAVDQALEAVRKR--KNGMVPNHLRDSHYKGASKLGRGIGYQYAHNFPGHYVKQQYL 408
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L G F + P N +K
Sbjct: 409 PDELLGTVFYE-PTENGYEK 427
>gi|407938047|ref|YP_006853688.1| recombination factor protein RarA [Acidovorax sp. KKS102]
gi|407895841|gb|AFU45050.1| recombination factor protein RarA [Acidovorax sp. KKS102]
Length = 445
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 263/425 (61%), Gaps = 38/425 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP + +V+GQ H+L P LR A S R S I WGPPG GKTT+A+ + +
Sbjct: 19 PLAERLRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMAD-- 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A +F+ +SAV GVKD+R+AVE A+ R +RT++FVDEVHRFNKSQQD+FLP +
Sbjct: 77 AFDAQFISISAVLGGVKDIREAVERAQAARDGLMQQRTIVFVDEVHRFNKSQQDAFLPHV 136
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G FIGATTENPSF + + LLSR V L PL D++ ++ A + +SV
Sbjct: 137 ESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLSEEDLKQIVALAQKEQALPAIESV- 195
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
AI+ L + DGDAR LN LE A+ AA QE ++ +
Sbjct: 196 ---------AIDRLVAYADGDARRLLNTLETLAMAAA------------QEKLTEITDAW 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+GG P
Sbjct: 235 LLKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGGADP 286
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
Y+ARRLVR A+ED+GLADP AL A+ + LG PE + LA+CV YLA+APKS +
Sbjct: 287 RYMARRLVRMAAEDIGLADPRALRLALDAAEVYERLGSPEGELALAECVVYLAVAPKSNA 346
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y+A AA+ +++ VP+HLRNAPTKLMKE+ YGK Y Y D+P +A +S+L
Sbjct: 347 VYKAYNAARAFVKQDA--TRPVPMHLRNAPTKLMKELDYGKNYRYAHDEPGGYAAGESYL 404
Query: 539 PPSLE 543
P ++
Sbjct: 405 PDGMQ 409
>gi|390935089|ref|YP_006392594.1| AAA ATPase [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570590|gb|AFK86995.1| AAA ATPase central domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 442
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 273/430 (63%), Gaps = 30/430 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL++RMRP +++ VGQ H+L + LL A+ ++++ S+IF+GPPGTGKTTLA I N
Sbjct: 15 NAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKADKVRSLIFYGPPGTGKTTLANIIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F L+AVTSGV D++ V +++ KRT+LFVDE+HRFNKSQQD+ LP
Sbjct: 75 TTKSS--FEKLNAVTSGVADIKKIVNESKDRLSMYGKRTILFVDEIHRFNKSQQDALLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENP F +I PL+SR + L PL +V+ ++ RA++D GL
Sbjct: 133 VEDGTIILIGATTENPYFEVIRPLVSRSMIFELYPLSDDEVKEIVLRALNDGKRGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++++ DA+ + + DGDAR ALNA+E++ +T E + DG
Sbjct: 189 GNEKIKITDDALNHIITYSDGDARTALNAIELAFLTT--------------ERDVDG--- 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V + ++ A+E Q K L YD+ G+ HY+ ISA KSMRG+D DAA+YWLA+M+ GE
Sbjct: 232 -VINIDIEVAQECIQRKVLKYDKNGDNHYDTISAFIKSMRGSDPDAALYWLAKMIYAGED 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P++IARR+V A+EDVG ADP ALN AVS QA + +GMPE +ILAQ Y+A APKS
Sbjct: 291 PMFIARRIVICAAEDVGNADPNALNIAVSAMQAVNQIGMPEGRIILAQAAIYVACAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEG-VPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
S ++ K + + Q G VP HL++A K +++ G GY Y D + KQ +
Sbjct: 351 S---SVVGIDKALEDIKSQKTGAVPKHLQDAHYKGAEKLNRGIGYKYAHDFKNHYVKQQY 407
Query: 538 LPPSLEGYKF 547
LP L G K+
Sbjct: 408 LPDELIGKKY 417
>gi|254427548|ref|ZP_05041255.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
gi|196193717|gb|EDX88676.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
Length = 443
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 198/421 (47%), Positives = 263/421 (62%), Gaps = 39/421 (9%)
Query: 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
R+RP +++D VGQ HL+ LR A+ +L S+I WGPPGTGKTTLA ++ + V
Sbjct: 19 RLRPAHLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPGTGKTTLA--LIMAQTVDA 76
Query: 187 KFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246
F+ LSAV SGVKD+R AVE A ++R+ +RTVLFVDEVHRFNK+QQD+FLP +E+G+I
Sbjct: 77 AFITLSAVLSGVKDIRAAVEQA-QIRLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTI 135
Query: 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD-VNNGLSKSVGGTRV 305
FIGATTENPSF L LLSR RV L L P D+ LL RA+ D NG+
Sbjct: 136 TFIGATTENPSFELNNALLSRARVYRLRALAPDDLSGLLGRALQDPALNGM--------- 186
Query: 306 EVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALV 365
+++ DA E L + DGDAR LN LE++A A P + + + +
Sbjct: 187 QLDADARELLLNYADGDARRLLNMLEVAADLADQDAPKIDAELMRE-------------- 232
Query: 366 TLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIA 425
L DA F D+ G+ Y+ ISA+HKS+RG+D DAA+YW ARML+GG PLY+A
Sbjct: 233 VLRDAVRRF-------DKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYLA 285
Query: 426 RRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRA 485
RR+VR ASED+G ADP AL + + LG PE + +AQ +AYLA+APKS ++Y A
Sbjct: 286 RRVVRMASEDIGNADPRALTLCLQAWDVQERLGSPEGELAIAQAIAYLAVAPKSNAVYNA 345
Query: 486 LGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS---AKQSFLPPSL 542
A ++R+ + VPLHLRNAPT+LMK+ G+G Y Y D P A +++ P SL
Sbjct: 346 YNQACALVRQQ--PTDEVPLHLRNAPTQLMKDEGFGAEYHYAHDFPEAFVAGENYFPASL 403
Query: 543 E 543
+
Sbjct: 404 Q 404
>gi|153854634|ref|ZP_01995884.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
gi|149752738|gb|EDM62669.1| ATPase, AAA family [Dorea longicatena DSM 13814]
Length = 439
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 190/439 (43%), Positives = 269/439 (61%), Gaps = 30/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP + +VVGQ H++ + LL A+ +++L S+IF+GPPGTGKTTLAK I N+
Sbjct: 16 APLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKADKLSSVIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F ++A T+G KD+ + + A++++ K+T+LFVDE+HRFNK QQD LP +
Sbjct: 76 T--SAEFTQINATTAGKKDMEEVINKAKEMQGMYRKKTILFVDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + LLSR + L PL D++ L+ RAV D G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNGALLSRSSIFELQPLAKEDIKTLITRAVYDTVKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ DA+EFL GDAR ALNA+E+ +T E +DG
Sbjct: 190 SYQAVIDEDALEFLADISGGDARSALNAVELGILTT--------------ERSADGK--- 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 233 -IRITLDVASECIQKRVVKYDKTGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS +
Sbjct: 292 KFIARRIMICASEDVGNADPMALTVAVSASQAVERIGMPEAQIILSQAVTYVATAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ A ++ + VP HL++A K +++G+G GY Y + P +Q +LP
Sbjct: 352 ACNAIFDAMASVKRT---KTTVPSHLQDAHYKGAQKLGHGIGYKYAHNYPHHYVEQQYLP 408
Query: 540 PSLEGYKFLDWPKSNTTDK 558
+ G KF P N +K
Sbjct: 409 DEIVGEKFY-VPSENGHEK 426
>gi|386389370|ref|ZP_10074186.1| recombination factor protein RarA [Haemophilus paraphrohaemolyticus
HK411]
gi|385695749|gb|EIG26300.1| recombination factor protein RarA [Haemophilus paraphrohaemolyticus
HK411]
Length = 445
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLS RMRP + + GQ HL+ L+ A+ R S+IFWGPPGTGKTTLA+ I + +
Sbjct: 14 PLSARMRPRTLTEYRGQSHLIGEGKPLQKAIAMQRAHSMIFWGPPGTGKTTLAEIIAHHL 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A KL ++ +RTVLFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAEVERI--SAVTSGIKEIREAIDKA-KLNQQTGRRTVLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR R+ L PL+ D+ +L++A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRARIYILKPLQKQDILSILEQALTDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ L +GDAR ALN LE+ + A E + G
Sbjct: 187 ETFVLEDEVLDLLADYVNGDARYALNCLELMSDMA--------------ETTAKGKLLNK 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L+T E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 SLLT-----EILGERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQIAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E+ ++ VP HLRNAPT+LMK +GYG GY Y ++P +A +++ P
Sbjct: 348 YTAFNEAKRLAKEA--KDYDVPEHLRNAPTQLMKSLGYGDGYRYAHNEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 406 PELKDTEF 413
>gi|394988913|ref|ZP_10381748.1| ATPase AAA [Sulfuricella denitrificans skB26]
gi|393792292|dbj|GAB71387.1| ATPase AAA [Sulfuricella denitrificans skB26]
Length = 437
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 198/432 (45%), Positives = 263/432 (60%), Gaps = 41/432 (9%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP +++V+GQ HLL P LR A S +L S+I WGPPG GKTT+A+ + +
Sbjct: 12 APLAERLRPQTLDEVIGQSHLLGPGKPLRLAFESKKLHSMILWGPPGVGKTTIAR--LTA 69
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+A F+ LSAV SGVKD+R+A++ A+ + + T+LFVDEVHRFNKSQQD+FLP +
Sbjct: 70 LAFDADFIALSAVLSGVKDIREAIDRAQLNLQQYGRHTILFVDEVHRFNKSQQDAFLPFV 129
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + FIGATTENPSF + + LLSR +V L L ++ L +RA +GL
Sbjct: 130 EQGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLSEQELAQLFERAAGIALHGL----- 184
Query: 302 GTRVEVNHDAIE-FLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ DA + L DGDAR LN LE A E VEQ DE+
Sbjct: 185 -----IFDDAAKCLLIGYADGDARRLLNLLEQMKTAA-------ETGHVEQIDET----- 227
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
LV + A +D+ GEE Y+ ISALHKS+RG++ DAA+YWL RML+GG
Sbjct: 228 ---LV-----RNALARSGRRFDKGGEEFYDQISALHKSVRGSNPDAALYWLVRMLDGGAD 279
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ RR++R A+ED+GLADP AL A+ + LG PE + LAQ V YLA APKS
Sbjct: 280 PLYLGRRIIRMATEDIGLADPRALRLALDAVETYERLGSPEGELTLAQAVLYLACAPKSN 339
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
+ Y A A+ ++ ++ GVPLHLRNAPTKLMKE+GYG Y Y D+ +A + +
Sbjct: 340 AAYVAYNNARAFVKND--KSRGVPLHLRNAPTKLMKELGYGHAYRYAHDESEAYAAGEDY 397
Query: 538 LP---PSLEGYK 546
P P +E Y+
Sbjct: 398 FPEEMPRVEFYQ 409
>gi|333900523|ref|YP_004474396.1| ATPase AAA [Pseudomonas fulva 12-X]
gi|333115788|gb|AEF22302.1| AAA ATPase central domain protein [Pseudomonas fulva 12-X]
Length = 441
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/430 (46%), Positives = 265/430 (61%), Gaps = 34/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R +++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRATTLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQ-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 70 VTDAHFETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDDAALRKLVGRALNE-----PKGLGE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + ++ E L S DGD R LN LE +A A ED + S +
Sbjct: 185 RRLNLPEESFEILKSAADGDGRRFLNFLENAADLA--------------EDGGE-ISTEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L L D + F D+ GE Y+ ISALHKS+RG+ D A+YW ARML+GG PL
Sbjct: 230 LLDLLGDTRRRF-------DKGGEAFYDQISALHKSIRGSSPDGALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASED+G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEDIGNADPRALTLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ I E+ G E VPLHLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 343 YMAFKAAKRDIAEN-GSRE-VPLHLRNAPTKLMKELGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKFLD 549
LE ++ +
Sbjct: 401 EDLEPRRYYE 410
>gi|145219908|ref|YP_001130617.1| recombination factor protein RarA [Chlorobium phaeovibrioides DSM
265]
gi|145206072|gb|ABP37115.1| Recombination protein MgsA [Chlorobium phaeovibrioides DSM 265]
Length = 445
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/426 (46%), Positives = 264/426 (61%), Gaps = 33/426 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+ER+RP +++D+ GQ+HLL P+ LR + +LPS+IFWGPPGTGKTTLA+ +
Sbjct: 23 PFQPLAERVRPRSLDDMRGQEHLLGPDGPLRRFLSGGQLPSMIFWGPPGTGKTTLAE--I 80
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ A+ ++F LSA+ SGVK+VR A+ DA R + +RT+LF+DE+HRFNK+QQD+ L
Sbjct: 81 CASALGFRFETLSAIDSGVKEVRRALSDAASARER-GERTILFIDEIHRFNKAQQDTLLH 139
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
IE G +V IGATTENPSF + LLSR +V L PL D+ L++RA+D + S+
Sbjct: 140 AIEQGVVVLIGATTENPSFEVNAALLSRMQVYILKPLTEDDIASLIQRAMDGDSLFASR- 198
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+VE+ FL GDAR ALNALE A VP E DG
Sbjct: 199 ----KVELEDPG--FLLRFAGGDARKALNALE----AAMSLVP-----------EGDGP- 236
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+T D + A Q + YD+ GE HY+ ISA KS+RG+D DAA++WLARM++GGE
Sbjct: 237 ---VQLTADVFERALQHRAPMYDKGGEAHYDTISAFIKSLRGSDPDAALFWLARMIDGGE 293
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRLV FASEDVG ADP A+ AVS +QA +G+PE + LAQ V YLA KS
Sbjct: 294 DPKFIARRLVIFASEDVGNADPYAITLAVSVFQAVSMIGLPEARINLAQGVTYLASCAKS 353
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y G + + + QN +P+HLRNAPTKLMK GYG Y Y P ++ +
Sbjct: 354 NAAY--AGINEALAESKLLQNLSIPMHLRNAPTKLMKRQGYGANYRYPHSFPGHFVEEHY 411
Query: 538 LPPSLE 543
P +E
Sbjct: 412 FPEGME 417
>gi|406661932|ref|ZP_11070041.1| Replication-associated recombination protein A [Cecembia lonarensis
LW9]
gi|405554191|gb|EKB49304.1| Replication-associated recombination protein A [Cecembia lonarensis
LW9]
Length = 421
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 270/441 (61%), Gaps = 40/441 (9%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ PL+ERMRP + +++GQ+HL +P + L A+ S +PS+IFWGPPG GKTT+A I
Sbjct: 2 IDSTPLAERMRPSRLEELIGQEHLTAPTAFLYKAIKSGNVPSLIFWGPPGVGKTTIANII 61
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
N + V F LSA++SGVKD+R+ +E A K + VLF+DE+HRFNKSQQD+ L
Sbjct: 62 ANEIKVP--FYTLSAISSGVKDIREVIEKA-----KFQRGAVLFIDEIHRFNKSQQDALL 114
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E G I IGATTENPSF + LLSRC+V TLN L H++E +L++A++ K
Sbjct: 115 GAVEKGVIRLIGATTENPSFEVNAALLSRCQVYTLNSLGKHELESILQQAME-------K 167
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
V + + + E L GD R LN EI + + E D C
Sbjct: 168 DVELKKKRIVLEETEALLRMSGGDGRKLLNLFEIV---------INGINE-------DPC 211
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+++ + + Q K YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGG
Sbjct: 212 -----VISNEKVIQIAQQKIALYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGG 266
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E +IARRLV ASED+G A+P AL A +C++A +G PE +IL+QCV YLA +PK
Sbjct: 267 EDVKFIARRLVILASEDIGNANPNALLLATNCFEAVKMIGYPESRIILSQCVTYLASSPK 326
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQS 536
S + Y A+ AQ +++E+ + VPLHLRNAPTKLMK++ YGK Y Y D Q
Sbjct: 327 SNASYMAINRAQALVKET--GDLPVPLHLRNAPTKLMKDLNYGKEYKYAHDYDQNFVMQE 384
Query: 537 FLPPSLEGYKFLDWPKSNTTD 557
F P +++ K + P +N +
Sbjct: 385 FFPDAIKNTKLYE-PGNNARE 404
>gi|404451408|ref|ZP_11016374.1| AAA ATPase [Indibacter alkaliphilus LW1]
gi|403762906|gb|EJZ23926.1| AAA ATPase [Indibacter alkaliphilus LW1]
Length = 420
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 264/439 (60%), Gaps = 40/439 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP + +++GQ+HL +P S L A+ S +PS+I WGPPG GKTT+A I N
Sbjct: 3 NTPLAERMRPSKLEELIGQEHLSAPTSFLHRAIKSGSVPSLILWGPPGVGKTTIANIIAN 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA++SGVKD+R+ +E A K VLF+DE+HRFNKSQQD+ L
Sbjct: 63 EIKAP--FYTLSAISSGVKDIREVIEKA-----KFQMGVVLFIDEIHRFNKSQQDALLGA 115
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF + LLSRC+V TLNPL ++E +L +A++ K V
Sbjct: 116 VEKGIIRLIGATTENPSFEVNAALLSRCQVFTLNPLGRTELEAMLHQAME-------KDV 168
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ + E L GD R LN EI V E D C
Sbjct: 169 LIKKKHIELKETEALLRLSGGDGRKLLNLFEI----------------VINGLEEDPC-- 210
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T + + Q K + YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 211 ---VITNEKVTKIAQQKVVLYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGED 267
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARRLV ASED+G A+P AL A +C++A +G PE +IL+QCV YLA PKS
Sbjct: 268 VKFIARRLVILASEDIGNANPNALLLATNCFEAVKIIGYPEARIILSQCVTYLASCPKSN 327
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y A+ AQ ++RE + VPLHLRNAPTKLMK++ YGK Y Y+ D Q +L
Sbjct: 328 ASYMAINKAQALVREK--GDLPVPLHLRNAPTKLMKDLNYGKEYKYSHDYEGNFVNQEYL 385
Query: 539 PPSLEGYKFLDWPKSNTTD 557
P L+ K + P SN +
Sbjct: 386 PDELKNLKLYE-PGSNARE 403
>gi|298372246|ref|ZP_06982236.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058]
gi|298275150|gb|EFI16701.1| ATPase, AAA family [Bacteroidetes oral taxon 274 str. F0058]
Length = 421
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/434 (45%), Positives = 267/434 (61%), Gaps = 35/434 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ VGQ HLL+ ++LRS + S + S I WGPPG GKTTLAK I N +
Sbjct: 3 PLAERLRPQSLDTFVGQRHLLADGAVLRSMIESGNISSFILWGPPGVGKTTLAKIIANRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A++ R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 --QRPFYTLSAVTSGVKDVREVIEKAKQNRFFNSAPPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IGATTENPSF +ITPLLSRC+V PL+ D+E L+ A+ + +++
Sbjct: 121 TGIFTLIGATTENPSFEVITPLLSRCQVYVFRPLERSDMEALVDYALKNDTELRQRTI-- 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
E+ + E + GDAR LN LE+ + V E K VE
Sbjct: 179 ---EIAEN--EAMLRYAGGDARKLLNILELIVNAQSEGTIVIENKLVE------------ 221
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ Q LAYD+ GE HY++ISA KS+RG+D DAA+YWLARM+ GGE
Sbjct: 222 ---------DRLQQNPLAYDKDGEMHYDIISAFIKSVRGSDPDAAVYWLARMIAGGEDVK 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRL+ A+ED+GLA+P AL A +C++A H +G+PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLIILAAEDIGLANPNALLLANACFEAVHKIGLPEARIPLAETTVYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+G A ++ E G N VPLHLRNAPTKLMKE+ YGK Y Y D KQ FLP
Sbjct: 333 YMAIGEALALV-EKTG-NLPVPLHLRNAPTKLMKELNYGKEYKYAHDYEGNFVKQKFLPD 390
Query: 541 SLEGYKFLDWPKSN 554
++G + + P++N
Sbjct: 391 EVDGARLWN-PQNN 403
>gi|193212966|ref|YP_001998919.1| recombination factor protein RarA [Chlorobaculum parvum NCIB 8327]
gi|193086443|gb|ACF11719.1| AAA ATPase central domain protein [Chlorobaculum parvum NCIB 8327]
Length = 452
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 264/423 (62%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +I+++ GQ+HL+ P +RS + R+PS+IFWGPPG+GKTTLA+ S+
Sbjct: 29 PLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQGRIPSMIFWGPPGSGKTTLAEICAGSL 88
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+Y+F LSA +GVKDVR +E A+K R ++ +LF+DE+HRFNK+QQD+ L IE
Sbjct: 89 --NYRFEQLSATDAGVKDVRRVLEVAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIE 146
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF + LLSR +V LNPL +V+ +++RA+ G +
Sbjct: 147 QGLIVLIGATTENPSFEVNRALLSRMQVYILNPLSEAEVQRVVERAI-----GSDPQLAA 201
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VEV +EFL + GDAR ALNALE + A + G +P V
Sbjct: 202 AGVEVRD--MEFLLAYAAGDARKALNALEAALSLAPL-----------------GTAPMV 242
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L ++A Q + AYD+ GE HY+ +SA KSMRG+D DAA++W+A+M++GGE P
Sbjct: 243 IDRKL--LEQALQHRAPAYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPK 300
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V FASED+G ADP AL AVS + A +G+PE + LAQ YLA PKS +
Sbjct: 301 FIARRMVIFASEDIGNADPYALTLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNAS 360
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+ + A +++ N PL+LRNAPT LMKEIGYGKGY Y P + + P
Sbjct: 361 YQGINEALSEVKKGAA-NAVPPLYLRNAPTDLMKEIGYGKGYRYPHSFPGHFVDEHYFPE 419
Query: 541 SLE 543
+E
Sbjct: 420 QME 422
>gi|149377437|ref|ZP_01895180.1| putative ATPase associated with chromosome architecture
[Marinobacter algicola DG893]
gi|149358278|gb|EDM46757.1| putative ATPase associated with chromosome architecture
[Marinobacter algicola DG893]
Length = 447
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 198/441 (44%), Positives = 268/441 (60%), Gaps = 31/441 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS A PL+ RMRP ++++ VGQ HL+ LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFAEQQGFRPLAARMRPASLDEYVGQSHLVGEGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N +S++ V SAV SGVKD+R VE A++ + + T+LFVDEVHRFNK
Sbjct: 63 TTFARLLANLSDLSFETV--SAVLSGVKDIRLIVERAKERKRSEGRDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D+ LL+R++
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEETDILELLERSLS- 179
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
GL+ R V +E + + GDAR ALN LE++ A
Sbjct: 180 APEGLA-----GRFTVEKSVLELMATASGGDARRALNILEVATDLA-------------- 220
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
E + DG A +T D ++ Q +D+ G+ Y+ ISALHKS+RG+D D ++YWL
Sbjct: 221 EPDEDGA----ARITSDHLEQVLQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG PLY+ARRL R ASED+G ADP AL A+ ++A LG PE + LAQ V
Sbjct: 277 CRMLDGGCDPLYVARRLARIASEDIGNADPRALQIAMDAWEAQERLGSPEGELALAQAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLAL+PKS ++Y A IR + VP+HLRNAPTKL+K +G+G Y Y D+P
Sbjct: 337 YLALSPKSNAVYSAFNQCMADIRND--PDYEVPVHLRNAPTKLLKSMGHGDEYRYAHDEP 394
Query: 532 ---SAKQSFLPPSLEGYKFLD 549
+A +S+LP S+ ++ +
Sbjct: 395 EAFAAGESYLPESIHQRRYYE 415
>gi|416052370|ref|ZP_11578245.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992099|gb|EGY33524.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 446
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGKGKPLRRAIEAGYVHSMIFWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSAQEIEHVLQQAIDDPENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + + L +GDAR+ALN LE+ A + +G
Sbjct: 188 VRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAG--------------ESENGKILDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLLT-----EVLGEQQARFDKQGDRFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT LMK++G+G Y Y D+P +A +++ P
Sbjct: 349 YLAFKAAKKLATESTDFD--VPEHLRNAPTNLMKDLGFGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis
50-1 BON]
gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON]
Length = 444
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 194/439 (44%), Positives = 274/439 (62%), Gaps = 29/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP + + VGQ+H+++P +L A+ ++RL S+IF+GPPGTGKTTLA+ I N+
Sbjct: 16 APLAERMRPRTLEEFVGQEHIIAPGRMLYRAIKADRLSSVIFYGPPGTGKTTLARVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F LSAVT+GV DVR +++A++ +RT+LF+DE+HRFNK+QQD+ LP +
Sbjct: 76 T--KSHFEQLSAVTAGVADVRRLIDEAKQRLGMYGQRTILFIDEIHRFNKAQQDALLPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I+ IGATTENP F + + LLSR V L PLK ++ +LKRA+ D + GL G
Sbjct: 134 EAGTIILIGATTENPYFEVNSALLSRSTVFELYPLKEKHLKEILKRALADKDRGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+E+ DAI+ + + DGDAR LNALEI+ +T P + DG
Sbjct: 190 NYAIEITDDAIDHIVNMADGDARSVLNALEIAFLT----TPPSD----------DG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ + L A+E Q + L YD+AG+ HY+ ISA KSMRG+D +AA+YWLA+M+ GE P
Sbjct: 232 IIHIDLGVAEECIQRRALRYDKAGDNHYDTISAFIKSMRGSDPNAAVYWLAKMINAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR+V ASEDVG ADP AL A++ A F+GMPE +IL Y+A APKS +
Sbjct: 292 KFIARRIVICASEDVGNADPQALLIAMAAAHAVQFIGMPESQIILTHAATYVACAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ A ++ ++ GVP HL+++ ++G+G GY Y D P KQ +LP
Sbjct: 352 TVMAIDKALSDVKNK--RDTGVPDHLKDSSYDGEGKLGHGVGYKYAHDYPEHYVKQQYLP 409
Query: 540 PSLEGYKFLDWPKSNTTDK 558
SL G + + P N +K
Sbjct: 410 DSLIGTVYYE-PSDNGYEK 427
>gi|313677223|ref|YP_004055219.1| ATPase AAA [Marivirga tractuosa DSM 4126]
gi|312943921|gb|ADR23111.1| AAA ATPase central domain protein [Marivirga tractuosa DSM 4126]
Length = 425
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/438 (43%), Positives = 270/438 (61%), Gaps = 39/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + ++VGQ HL+ +LR + ++PS+IFWGPPG GKTT+A I N V
Sbjct: 8 PLAERMRPTKLEELVGQQHLVGEKGVLRLTIAQGKVPSMIFWGPPGVGKTTIANIIANQV 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA+++GVKDVR+ ++ R + + +LF+DE+HRFNKSQQD+ L +E
Sbjct: 68 KAP--FQTLSAISAGVKDVREVIQ-----RASRSGKIILFIDEIHRFNKSQQDALLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF + + LLSRC+V TL L+ D++ LL A+++ + +
Sbjct: 121 KGVITLIGATTENPSFEVNSALLSRCQVYTLKALELEDLKGLLNTALEN-----DEKLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ E L GDAR LN E+ V + +DE
Sbjct: 176 LNIEIKE--YEALIQLSGGDARKLLNLFEL-------------VIDAYGKDEK------- 213
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D KE Q + YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 214 IKITNDQVKEIAQNRMAIYDKSGEQHYDIISAFIKSIRGSDPNAALYWLARMIEGGEDVK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRL+ ASED+GLA+P AL A + +QA +G PE ++LAQCV YLA +PKS +
Sbjct: 274 FIARRLLISASEDIGLANPNALLIATNTFQAVSMIGYPEAEIVLAQCVTYLACSPKSNAS 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A++++R++ + VPLHLRNAPTKLMK++ YG GY Y+ D P A Q F+P
Sbjct: 334 YLAIKKARQLVRDT--GDLSVPLHLRNAPTKLMKDMNYGSGYKYSHDFPGNFAYQEFMPE 391
Query: 541 SLEGYKFLDWPKSNTTDK 558
+ + P++N +K
Sbjct: 392 EISKNTLYE-PQNNAREK 408
>gi|134117618|ref|XP_772580.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255195|gb|EAL17933.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 626
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 201/447 (44%), Positives = 269/447 (60%), Gaps = 42/447 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNS 181
PL+ER RP I+ +GQ ++ SLLR + +++L S I WGPPG GKTTLA+ I S
Sbjct: 140 PLAERSRPSEISQYIGQSDIVGLGSLLRVQIEASKLVGSCILWGPPGCGKTTLARLIAKS 199
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+K LSA +SG +DVR E A+ + +RTVL +DE+HRFN++QQD LP +
Sbjct: 200 SGADFKE--LSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYV 257
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF + LLSRC+V TL+ P ++I+L+ AV ++ S+ +
Sbjct: 258 EKGWIQLIGATTENPSFKVNGALLSRCQVFTLHAHSPESLQIILRNAVQTISE--SEPI- 314
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA-----------AVRVPVKEVKEVE 350
+ I FL DGDAR ALN LE++ T A RV +++E
Sbjct: 315 ---PYLPSGLIPFLADVADGDARQALNGLELALRTCQTMDETASAEKAQRVNSASGEKME 371
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCK--------------HLAYDRAGEEHYNLISALH 396
+E + D V ++A+E +Q K Y+R GEE Y++ISALH
Sbjct: 372 KEGQKDEFDAAV-----EEAEEGYQKKKRDEEIMDAVRRGLQKGYNRTGEERYDMISALH 426
Query: 397 KSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHF 456
K +RG+D AA+YWLARM+ GGE PLYIARRL+ ASEDVGLAD AL A++ YQAC
Sbjct: 427 KCLRGSDGSAAMYWLARMITGGEDPLYIARRLIVVASEDVGLADNHALPLAMATYQACQT 486
Query: 457 LGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMK 516
+G+PEC + LA CVAYLA APKS Y+A AA+++ ++ GVPL +RNAPT+LMK
Sbjct: 487 IGLPECRINLAHCVAYLAEAPKSTRSYKAYAAAEQLA--TMPPLPGVPLQIRNAPTQLMK 544
Query: 517 EIGYGKGYIYTPD-DPSAKQSFLPPSL 542
++GYGK Y Y PD +LP SL
Sbjct: 545 KLGYGKKYAYNPDYGHPVHNDYLPESL 571
>gi|255530100|ref|YP_003090472.1| ATPase AAA [Pedobacter heparinus DSM 2366]
gi|255343084|gb|ACU02410.1| AAA ATPase central domain protein [Pedobacter heparinus DSM 2366]
Length = 426
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/439 (45%), Positives = 272/439 (61%), Gaps = 36/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP N+++ VGQ HL+ P+++LR A+ S +LPS+IFWGPPG GKTTLA I S
Sbjct: 6 PLAERMRPQNLDEYVGQQHLVGPDAVLRKAIQSGQLPSMIFWGPPGVGKTTLAYII--SQ 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSA+ SGVKD+RD ++ A L+ +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 TLDRPFFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV-DDVNNGLSKSVG 301
G + IGATTENPSF +I+ LLSRC+V L L ++ LL+ A+ DV L K
Sbjct: 124 RGLVTLIGATTENPSFEVISALLSRCQVYILKALNEEELSGLLQTAIKQDV---LLKEKK 180
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
T E H+A+ L GDAR LN LEI+ +G
Sbjct: 181 ITIKE--HEALIRLSG---GDARKLLNVLEIAV---------------------NGIGGT 214
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T ++ Q YD+AGE+HY++ISA KS+RG+D +AA+YWLARM+EGGE P
Sbjct: 215 KIVLTNENVLAHAQQNLALYDKAGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGEDP 274
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARRL+ ASED+G A+P AL A +C+QA + +G PE +IL+Q V Y+A + KS +
Sbjct: 275 LFIARRLLILASEDIGNANPNALLLANNCFQAVNVIGYPEARIILSQAVTYMAASVKSNA 334
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLP 539
Y A+ AQ +++++ N VPLH+RNAPTKLMK IGYGK Y Y + + Q +LP
Sbjct: 335 AYEAINNAQALVKQT--GNLPVPLHIRNAPTKLMKNIGYGKDYKYAHSYEGNFEAQEYLP 392
Query: 540 PSLEGYKFLDWPKSNTTDK 558
L G K + K+ DK
Sbjct: 393 EPLSGTKLYEPGKNPAEDK 411
>gi|270294113|ref|ZP_06200315.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275580|gb|EFA21440.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 423
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 267/438 (60%), Gaps = 35/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPRTLDEYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+ +
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLELLQRAITT-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ +S+ P
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELVV-------------------DSEAADP-- 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VLITDDMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLLANACFDTLMKVGWPEGRIPLAEATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y D P KQ FLP
Sbjct: 333 YMAINNALELVRET--GNLPVPLHLRNAPTKLMKQLGYGEKYKYAHDYPGNFVKQQFLPD 390
Query: 541 SLEGYKFLDWPKSNTTDK 558
L+ + + P+ N ++
Sbjct: 391 ELKDRRIWE-PQLNPAEQ 407
>gi|340358881|ref|ZP_08681384.1| replication-associated recombination protein A [Actinomyces sp.
oral taxon 448 str. F0400]
gi|339885627|gb|EGQ75336.1| replication-associated recombination protein A [Actinomyces sp.
oral taxon 448 str. F0400]
Length = 461
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/422 (45%), Positives = 254/422 (60%), Gaps = 30/422 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D + P PL++R+RP + DVVGQDHLL+PN+ L + + RL SII WGPPG GK
Sbjct: 15 DGAAVVGDPTRPLADRLRPRTLADVVGQDHLLAPNAPLGRMIEAGRLSSIILWGPPGCGK 74
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + ++ V SA SGV D+R A + R + T+LFVDE+HRFN+
Sbjct: 75 TTIARLLAERTGLVFEQV--SATFSGVADLRKVFTAAARRR-GIGQGTLLFVDEIHRFNR 131
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +EDG++V +GATTENPSF L LLSRC+VL L+ L + LL RA
Sbjct: 132 AQQDSFLPYVEDGTVVLVGATTENPSFELNGALLSRCQVLVLHRLGEAALTELLTRA--- 188
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
++ G R + +A L + DGD R L +E ++
Sbjct: 189 ------EAAIGRRPPLTGEARAALLAMADGDGRYLLGMVE----------------QILG 226
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
+ G +T +D + YD++GEEHYNLISALHKSMRG D DAA+YWL
Sbjct: 227 WERLQGSGGDAEDLTAEDLTAVVTSRAPLYDKSGEEHYNLISALHKSMRGCDPDAALYWL 286
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARML+GGE PLYI RRL RFASEDVG+ADP AL ++ + A LG PE + +AQ V
Sbjct: 287 ARMLDGGEDPLYIVRRLTRFASEDVGMADPEALRTTLAAWDAYERLGSPEGELAIAQAVV 346
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
+LA APKS+++YR L A+K R + + P H+ NAPT LMK++GYG+GY Y PD P
Sbjct: 347 HLATAPKSVAVYRGLTRARKAARGT--GSLAPPAHILNAPTGLMKKLGYGEGYQYDPDAP 404
Query: 532 SA 533
Sbjct: 405 DG 406
>gi|146307409|ref|YP_001187874.1| recombination factor protein RarA [Pseudomonas mendocina ymp]
gi|421502103|ref|ZP_15949058.1| recombination factor protein RarA [Pseudomonas mendocina DLHK]
gi|145575610|gb|ABP85142.1| Recombination protein MgsA [Pseudomonas mendocina ymp]
gi|400346950|gb|EJO95305.1| recombination factor protein RarA [Pseudomonas mendocina DLHK]
Length = 440
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 263/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+H+L+P LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRATSLDEYVGQEHVLAPGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAK-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 70 VTDAHFETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ D K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVNRALTD-----PKGLGE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + +A + L + DGD R LN LE +A A DG V
Sbjct: 185 RHLSLPDEAFQILLAAADGDGRRLLNFLENAADLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 ELLQNLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWYARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALTLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E Q VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMRDAAEQGSQE--VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKFLD 549
P +LE ++ D
Sbjct: 399 FPEALEPRQYYD 410
>gi|406868342|gb|EKD21379.1| hypothetical protein MBM_00492 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 542
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 206/507 (40%), Positives = 287/507 (56%), Gaps = 49/507 (9%)
Query: 46 GAACSFELPVPNPNPNQNPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRL 105
G SF+ P P N P QP R F P E+E D + P K
Sbjct: 68 GPTLSFQ-PKPQSNGIITPSQPARKRSFEDIAPPIK------DEREVDAAVGPEEEQKAK 120
Query: 106 KTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWG 165
K + T A APL+ERMRP +++D+ GQ+ L+ P +LRS + +R+PS++ WG
Sbjct: 121 KAK-----TNAFQ-QAAPLAERMRPRSLDDICGQE-LVGPQGILRSLIEQDRVPSMVLWG 173
Query: 166 PPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225
GTGKTT+A+ I + V +FV +++ +SGV D + +A+ + ++T++F DE
Sbjct: 174 GAGTGKTTIARCIAS--MVGSRFVEINSTSSGVADCKKIFAEAKGELGLTGRKTIIFCDE 231
Query: 226 VHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285
+HRF+K+QQD FL +E G + IGATTENPSF + LLSRCR TL L D+ +L
Sbjct: 232 IHRFSKTQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTDDDIFRIL 291
Query: 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS-AITAAVRVPVK 344
+RA+ + + T V+ + + +L + DGDAR ALN LE++ +++ + +
Sbjct: 292 ERALTVEGHNYT-----TSDLVDSELLRYLAAFSDGDARTALNLLELAMGLSSRPSITKE 346
Query: 345 EVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDA 404
E+K + K L YDRAG++HY+ ISA HKS+RG+D
Sbjct: 347 EIK-------------------------SSLTKTLVYDRAGDQHYDTISAFHKSVRGSDP 381
Query: 405 DAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464
DAA+Y+LARML+ GE PLY+ARR+V ASEDVGLAD L+ A Y A +GMPEC +
Sbjct: 382 DAALYYLARMLQSGEDPLYVARRMVVIASEDVGLADNSMLSLATGAYTAAEKIGMPECRI 441
Query: 465 ILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
LA L LAPKS YR L A +RE + VP+HLRNAPTKLMKE+GYG Y
Sbjct: 442 NLAHVTVALCLAPKSTRAYRGLNNAYAALREPGVASLPVPIHLRNAPTKLMKELGYGDQY 501
Query: 525 IYTPD--DPSAKQSFLPPSLEGYKFLD 549
Y P+ D +Q +LP L+G FL+
Sbjct: 502 KYNPNYKDGKVEQEYLPEQLQGRTFLE 528
>gi|160885966|ref|ZP_02066969.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
gi|383112809|ref|ZP_09933598.1| hypothetical protein BSGG_5266 [Bacteroides sp. D2]
gi|156108779|gb|EDO10524.1| ATPase, AAA family [Bacteroides ovatus ATCC 8483]
gi|382949002|gb|EIC71904.1| hypothetical protein BSGG_5266 [Bacteroides sp. D2]
Length = 423
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 197/439 (44%), Positives = 271/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D++ LL+RA+ + + K
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLQELLQRAI--TTDAILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V+ E E
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELV---------------VQSETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLIANACFDTLMKIGWPEGRIPLAEATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WQPQNNPAEQ 407
>gi|160889857|ref|ZP_02070860.1| hypothetical protein BACUNI_02288 [Bacteroides uniformis ATCC 8492]
gi|423306338|ref|ZP_17284337.1| hypothetical protein HMPREF1072_03277 [Bacteroides uniformis
CL03T00C23]
gi|423309112|ref|ZP_17287102.1| hypothetical protein HMPREF1073_01852 [Bacteroides uniformis
CL03T12C37]
gi|156860849|gb|EDO54280.1| ATPase, AAA family [Bacteroides uniformis ATCC 8492]
gi|392679073|gb|EIY72466.1| hypothetical protein HMPREF1072_03277 [Bacteroides uniformis
CL03T00C23]
gi|392685851|gb|EIY79162.1| hypothetical protein HMPREF1073_01852 [Bacteroides uniformis
CL03T12C37]
Length = 423
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 267/438 (60%), Gaps = 35/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPRTLDEYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+ +
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLELLQRAITT-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ +S+ P
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELVI-------------------DSEATDP-- 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VLITDDMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLLANACFDTLMKVGWPEGRIPLAEATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y D P KQ FLP
Sbjct: 333 YMAINNALELVRET--GNLPVPLHLRNAPTKLMKQLGYGEKYKYAHDYPGNFVKQQFLPD 390
Query: 541 SLEGYKFLDWPKSNTTDK 558
L+ + + P+ N ++
Sbjct: 391 ELKDRRIWE-PQLNPAEQ 407
>gi|433654847|ref|YP_007298555.1| AAA ATPase [Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293036|gb|AGB18858.1| AAA ATPase [Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 444
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 191/431 (44%), Positives = 271/431 (62%), Gaps = 28/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL++RMRP +++ VGQ H+L + LL A+ ++R+ S+IF+GPPGTGKTTLA I N
Sbjct: 15 NAPLADRMRPTTLDEFVGQKHILGHDKLLYRAIKADRVRSLIFYGPPGTGKTTLANIIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ S F L+AVTSGV D++ V +++ KRT+LF+DE+HRFNKSQQD+ LP
Sbjct: 75 TTKSS--FEKLNAVTSGVTDIKKIVNESKDRLSMYGKRTILFIDEIHRFNKSQQDALLPY 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+I+ IGATTENP F +I PL+SR + L PL D++ ++ RA++D GL
Sbjct: 133 VEDGTIILIGATTENPYFEVIRPLVSRSMIFELYPLSNEDIKEIVLRALNDEKRGL---- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++++ DA+ + + DGDAR ALNA+E++ +T + DE+
Sbjct: 189 GNEKIKITDDALNHIITYSDGDARAALNAIELAFLTT-------------ERDENG---- 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V + ++ A+E Q K L YD+ G+ HY+ ISA KSMRG+D DA +YWLA+M+ GE
Sbjct: 232 -VINIDIEIAQECIQKKALKYDKDGDNHYDSISAFIKSMRGSDPDATLYWLAKMIYAGED 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+IARR+V A+EDVG ADP ALN AVS QA + +GMPE +ILAQ Y+A APKS
Sbjct: 291 PLFIARRIVICAAEDVGNADPNALNIAVSSMQAVNQIGMPEGRIILAQAAIYVACAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S + +A I+ + VP HL++A K + + G GY Y D + KQ +L
Sbjct: 351 SSIIGIDSALDDIKNL--KTGAVPKHLQDAHYKGAENLKRGVGYKYAHDFKNHYVKQQYL 408
Query: 539 PPSLEGYKFLD 549
P L G K+ +
Sbjct: 409 PDELIGKKYYN 419
>gi|89901945|ref|YP_524416.1| recombination factor protein RarA [Rhodoferax ferrireducens T118]
gi|89346682|gb|ABD70885.1| Recombination protein MgsA [Rhodoferax ferrireducens T118]
Length = 435
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 260/425 (61%), Gaps = 38/425 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ LL LR A S + S I WGPPGTGKTT+A+ + +
Sbjct: 12 HVPLAERLRPRTLLEVIGQQQLLGEGMALRIAFESGQPHSCILWGPPGTGKTTIARLMAD 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A +F+ +SAV GVKD+R+AVE A ++ +RT++FVDEVHRFNKSQQD+FL
Sbjct: 72 --AFDAQFITISAVLGGVKDIREAVEQA-QVAQGQGRRTIVFVDEVHRFNKSQQDAFLAH 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G FIGATTENPSF + + LLSR V L PL P D+E ++ RA+ L
Sbjct: 129 VESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLAPQDLEQIIARAL--ALQALPA-- 184
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ A E L DGDAR LN LE+ ++ A QE S+ P
Sbjct: 185 ------IEKIASERLVGFADGDARRLLNTLEMLSVAAT------------QERVSEITDP 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ V + + YD+ GE+ Y+ ISALHKS+RG++ DAA+YWL RML+GG +
Sbjct: 227 WLQKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSNPDAALYWLVRMLDGGAE 278
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P Y+ARRL+R ASED+GLADP AL A+ LG PE + LAQCV YLA+APKS
Sbjct: 279 PRYLARRLIRMASEDIGLADPRALRLALDAADVYERLGSPEGELALAQCVVYLAVAPKSN 338
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y+A AA+ +++ VP+HLRNAPT+LMKE+ YGKGY Y D+ +A + +
Sbjct: 339 AVYKAFNAAKAFVKQD--GTRPVPMHLRNAPTRLMKELDYGKGYRYAHDEEGGFAAGERY 396
Query: 538 LPPSL 542
LP +
Sbjct: 397 LPDGM 401
>gi|398808431|ref|ZP_10567294.1| AAA ATPase [Variovorax sp. CF313]
gi|398087463|gb|EJL78049.1| AAA ATPase [Variovorax sp. CF313]
Length = 430
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 195/433 (45%), Positives = 264/433 (60%), Gaps = 38/433 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ HLL P LR A S + S I WGPPGTGKTT+A+ + +
Sbjct: 6 HQPLAERLRPRTLGEVIGQQHLLGPGMPLRIAFESGQPHSCILWGPPGTGKTTIARLMAD 65
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+R+AVE A R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 66 --AFDAQFLSISAVLGGVKDIREAVERATAARDGLEQQRTIVFVDEVHRFNKSQQDAFLP 123
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF + + LLSR V L L D++ ++ RA ++
Sbjct: 124 HVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQSLGEDDLKQIVARA---------QA 174
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ ++ A++ L + DGDAR LN LE A+ A + ++ D +
Sbjct: 175 IQAVPA-IDAAAVDRLVAYADGDARRLLNTLETLAVAA-------------RAEKLDHIT 220
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
L L + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YW RML+GG
Sbjct: 221 DEWLLRVLGE-------RMRRYDKGGEQFYDTISALHKSVRGSDPDAALYWFVRMLDGGA 273
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APKS
Sbjct: 274 DPRYMARRLVRMASEDIGLADPRALRLALDAAEVYERLGTPEGELALAECVVYLAIAPKS 333
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y+A A + +++ VP+HLRNAPTKLMKE+ YGKGY Y D+ +A +
Sbjct: 334 NAVYKAYNAVRALVKTD--STRPVPMHLRNAPTKLMKELDYGKGYRYAHDEEGGFAAGER 391
Query: 537 FLPPSLEGYKFLD 549
+LP LEG F +
Sbjct: 392 YLPQGLEGQVFYE 404
>gi|226944894|ref|YP_002799967.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
gi|226719821|gb|ACO78992.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
Length = 441
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 264/424 (62%), Gaps = 34/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPASLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAK-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV +GVK++R AVE AR+ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 70 VTDAHFETISAVLAGVKEIRQAVEIARQQAAQHGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L +RA+ G + +GG
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRRLAERAL-----GEERGLGG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D++ L + DGD R LN LE +A ++ ++D++ G
Sbjct: 185 RHLSLPEDSLRMLLAAADGDGRRLLNLLENAA-------------DLVEDDQAIGTELLG 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L L D++ F D+ GE Y+ ISALHKS+RG+ DAA+YW ARML+GG PL
Sbjct: 232 NL--LGDSRRRF-------DKGGEAFYDQISALHKSVRGSSPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL ++ + LG PE + LAQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALPLCLAAWDVQERLGSPEGELALAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + + P
Sbjct: 343 YTAFKAARRDA-EQQGSLE-VPLHLRNAPTKLMKKLGYGEEYRYAHDEPEAYAAGEDYFP 400
Query: 540 PSLE 543
E
Sbjct: 401 EDFE 404
>gi|351731044|ref|ZP_08948735.1| recombination factor protein RarA [Acidovorax radicis N35]
Length = 450
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 260/426 (61%), Gaps = 38/426 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ H+L P LR A S R S I WGPPG GKTT+A+ + +
Sbjct: 18 HQPLAERLRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMAD 77
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+R+AVE A R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 78 --AFDAQFISISAVLGGVKDIREAVERAEAARDGLMQQRTIVFVDEVHRFNKSQQDAFLP 135
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF + + LLSR V L PL D++ ++ A+ L
Sbjct: 136 HVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLSEEDLKQIV--ALAQAEKALQA- 192
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ AI+ L + DGDAR LN LE A+ A QE ++
Sbjct: 193 -------IEDVAIDRLVAYADGDARRLLNTLETLAMAAT------------QEKLAEITD 233
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+GG
Sbjct: 234 AWLLKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGGA 285
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APKS
Sbjct: 286 DPRYMARRLVRMASEDIGLADPRALRLALDATEVYERLGSPEGELALAECVVYLAMAPKS 345
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y+A AA+ +++ VP+HLRNAPTKLMKE+ YGKGY Y D+ +A ++
Sbjct: 346 NAVYKAYNAARAWVKQD--GTRPVPMHLRNAPTKLMKELDYGKGYRYAHDEEGGFAAGEN 403
Query: 537 FLPPSL 542
+LP +
Sbjct: 404 YLPEGM 409
>gi|402847082|ref|ZP_10895389.1| ATPase, AAA family [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267124|gb|EJU16523.1| ATPase, AAA family [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 436
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 200/440 (45%), Positives = 272/440 (61%), Gaps = 37/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ GQ HL+ P +LR + RLPS+IFWGPPG GKTTL++ I S+
Sbjct: 6 PLAERMRPTSLEHYFGQSHLVGPQGILRPMIEQQRLPSLIFWGPPGVGKTTLSEIIARSL 65
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR---VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ F LSAV SGVKDVR+ +E + + S+ R +LF+DE+HRF+KSQQDS L
Sbjct: 66 DTA--FYSLSAVHSGVKDVREVLERIQCEQSGIFGSSVRPILFIDEIHRFSKSQQDSLLA 123
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF +I PLLSRC+V TLNPL ++ LL+ A+ + LS+
Sbjct: 124 AVEQGIVTLIGATTENPSFEVIRPLLSRCQVYTLNPLSSEEIIGLLQHAIT-TDELLSQR 182
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
R+E+ A L GDAR ALN LE+ A++ SD
Sbjct: 183 ----RLELTETAA--LLRYAGGDARRALNILELVALSTT----------------SDPLQ 220
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
VT + + Q LA+D+ GE HY++ SAL KS+RG+D DAAIYWLAR++EGGE
Sbjct: 221 -----VTDELVSQRVQTNPLAFDKGGELHYDIASALIKSIRGSDPDAAIYWLARLIEGGE 275
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRL+ A+ED+GLA+P AL A SC + +G PE + LA+ V YLA + KS
Sbjct: 276 DPSFIARRLMISAAEDIGLANPNALLLATSCAETLERIGWPEGRIPLAETVIYLACSEKS 335
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y A+ A ++++ N VPLHLRNAPT+LMK++GYG+GY Y+ D P +Q++
Sbjct: 336 NSAYMAINRALSFVKQT--GNLPVPLHLRNAPTELMKDLGYGEGYRYSHDYPGHFVQQAY 393
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP S+ +F +SN +
Sbjct: 394 LPESIGRERFWQSDESNGAE 413
>gi|254361649|ref|ZP_04977787.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
gi|261496364|ref|ZP_05992758.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|452744959|ref|ZP_21944798.1| recombination factor protein RarA [Mannheimia haemolytica serotype
6 str. H23]
gi|153093167|gb|EDN74183.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
gi|261307949|gb|EEY09258.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|452087014|gb|EME03398.1| recombination factor protein RarA [Mannheimia haemolytica serotype
6 str. H23]
Length = 445
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 190/439 (43%), Positives = 273/439 (62%), Gaps = 32/439 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP N+ + VGQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 14 PLAAKMRPRNLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHL 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+ +E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVERI--SAVTSGVKEIREVIEQA-KLNRQAGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR R+ L PL+ ++ +L+ A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRARIYILKPLQAVEILKILQMAIADTERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + L +GDAR ALN LE+ A +D + G
Sbjct: 187 ETLVLEDDVLALLADYVNGDARFALNCLELMVDMA--------------QDSAKGKVLNK 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L+T E + +D+ G+ +Y+LISALHKS+RG+ AD A+YW AR+L G PL
Sbjct: 233 SLLT-----EVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+ + +G E +AQ + YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y+A A+++ +E+ ++ VP HLRNAPT+LMK +GYG+ Y Y ++P +A +++ P
Sbjct: 348 YQAFNEAKRLAKEA--KDYDVPAHLRNAPTQLMKSLGYGEEYRYAHNEPNAYAAGENYFP 405
Query: 540 PSLEGYKFLDWPKSNTTDK 558
P L+ +F +P +K
Sbjct: 406 PELKDTEFY-FPSERGMEK 423
>gi|339018078|ref|ZP_08644221.1| AAA ATPase [Acetobacter tropicalis NBRC 101654]
gi|338752855|dbj|GAA07525.1| AAA ATPase [Acetobacter tropicalis NBRC 101654]
Length = 455
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 197/446 (44%), Positives = 268/446 (60%), Gaps = 49/446 (10%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
S +A P+ PL++R+RP + DVVGQ HLL P+ L + L S+I WG PG GKT
Sbjct: 28 SASARPAPNQPLADRLRPNRLEDVVGQGHLLGPDGSLTRMLERGSLASLILWGGPGVGKT 87
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
T+A+ + A KFV LSAV SGV D++ A E+AR+ + ++ T+LFVDE+HRFN++
Sbjct: 88 TIARLLAQ--AAGLKFVQLSAVFSGVADLKKAFENARR-QAEAGGGTLLFVDEIHRFNRA 144
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQD FLPV+EDG+IV +GATTENPSF L + LLSRC+V+ LN L +E LL RA ++
Sbjct: 145 QQDGFLPVVEDGTIVLVGATTENPSFALNSALLSRCQVMVLNRLDDSAMEALLVRAEEET 204
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
G + + + L + DGD R LN +E ++ ++ +
Sbjct: 205 ---------GRPLPLTEEGRATLRAMADGDGRYLLNMVE-------------QLLSLKTD 242
Query: 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
D AL L + + YDR EEHYNLISALHKS+RG+D DAA+YW A
Sbjct: 243 QPLDAQ----ALARL------LAKRAVLYDRDREEHYNLISALHKSLRGSDPDAALYWFA 292
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RMLEGGE P Y+ARRL RFA+EDVG+ADP AL A++ ++ LG PE + LAQ V +
Sbjct: 293 RMLEGGEDPRYLARRLTRFAAEDVGMADPHALPLAIAAWETYERLGSPEGELALAQLVVH 352
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--- 529
LA APKS ++Y+A GA ++ + + P H+ NAPT+LM++IGYGKGY Y D
Sbjct: 353 LATAPKSNAVYKAYGAVRRAAKATGSLMP--PAHILNAPTRLMQDIGYGKGYEYDHDAEE 410
Query: 530 ---------DPSAKQSFLPPSLEGYK 546
D +Q+F P+ GY+
Sbjct: 411 GFSGQNYFPDGMKRQTFYNPTGRGYE 436
>gi|335044612|ref|ZP_08537637.1| holliday junction DNA helicase [Methylophaga aminisulfidivorans MP]
gi|333787858|gb|EGL53742.1| holliday junction DNA helicase [Methylophaga aminisulfidivorans MP]
Length = 442
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 196/423 (46%), Positives = 259/423 (61%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++ +GQ HLL LR A+ S S+IFWGPPGTGKTTLAK I
Sbjct: 14 PLADRMRPKTLDQYIGQTHLLGAGKPLRQAIASGHPHSMIFWGPPGTGKTTLAKLIAGYC 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ +SAV +GVK+VR AV A++L + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 74 DA--EFITISAVLAGVKEVRAAVARAQQLLQERGRRTMLFVDEVHRFNKSQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+ FIGATTENPSF L LLSR RV L L+ D+ ++ RA+ D GL+
Sbjct: 132 DGTFTFIGATTENPSFELNNALLSRARVYVLKSLEAEDLRQIIDRAMSDEELGLADR--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+EV + L DGD R LN LEI+ A K K V++ D ++ S +
Sbjct: 189 -GIEVGESLRDQLAQTADGDGRRVLNLLEIAVDLA----DSKGQKAVDEHDLAEVLSGTI 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+D+ GE Y+ ISALHKS+RG+ DAA+YWL RML+GG P+
Sbjct: 244 R----------------RFDKGGEAFYDQISALHKSVRGSAPDAALYWLCRMLDGGCDPV 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RR+VR A+ED+G ADP L A+ +++ LG PE + +AQ V YLA APKS ++
Sbjct: 288 YLMRRVVRMAAEDIGNADPRGLRIALDAWESFDKLGSPEGELAIAQAVVYLACAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y A AA + S G E VP+HLRNAPTKLMKE+GYG+ Y Y D+P A +++ P
Sbjct: 348 YTAFKAAMHDAK-SHGSAE-VPVHLRNAPTKLMKELGYGREYRYAHDEPDAYAIGETYFP 405
Query: 540 PSL 542
S+
Sbjct: 406 DSM 408
>gi|260909479|ref|ZP_05916183.1| replication-associated recombination protein A [Prevotella sp. oral
taxon 472 str. F0295]
gi|260636404|gb|EEX54390.1| replication-associated recombination protein A [Prevotella sp. oral
taxon 472 str. F0295]
Length = 424
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 201/430 (46%), Positives = 267/430 (62%), Gaps = 39/430 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++D VGQ HL+ PN++LR+ + + R+PS I WGPPG GKTTLA+ + +
Sbjct: 4 PLAERMRPRSLDDYVGQKHLVGPNAVLRNMIEAGRIPSFILWGPPGVGKTTLAQIVAKKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD-DVNNGLSKSVG 301
G + IGATTENPSF +I PLLSRC++ L L D+E L++RA+ DV S+
Sbjct: 122 KGIVTLIGATTENPSFEVIRPLLSRCQLYVLQSLSKEDLEDLIERALKTDV------SLQ 175
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+EV +A L GDAR LN LE+ VE SP
Sbjct: 176 QRHIEVKENAA--LIRYSGGDARKLLNILELV---------------VE-------ASPA 211
Query: 362 VALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
A V +DD + Q LAYD+ GE HY+++SA KS+RG+D DAA+YW+ARM+EGGE
Sbjct: 212 NANVLIDDETVVKCLQQNPLAYDKDGEMHYDIVSAFIKSIRGSDPDAALYWMARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA + KS
Sbjct: 272 DPQFIARRLVISAAEDIGLANPNALLIANAAFDAVMKIGWPEGRIPLAEAAVYLATSAKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y+ + AA + R S+G N VPL+LRNAPTKLMK++GYG GY Y D A Q +
Sbjct: 332 NSAYQGINAALETAR-SMG-NLPVPLYLRNAPTKLMKQLGYGSGYKYAHDYEGHFAHQQY 389
Query: 538 LPPSLEGYKF 547
LP L+ +F
Sbjct: 390 LPDDLKDARF 399
>gi|126667375|ref|ZP_01738347.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
gi|126628131|gb|EAZ98756.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
Length = 445
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 205/442 (46%), Positives = 272/442 (61%), Gaps = 33/442 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS A PL+ RMRP + D VGQ HL+ P LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFASSGGFRPLAARMRPAKLADYVGQPHLVGPGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N ++++ V SAV SGVKD+R AVE AR + S + T+LFVDEVHRFNK
Sbjct: 63 TTFAQLLANVSDLAFENV--SAVLSGVKDIRAAVERARARKQGSGQDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D++ LL RA
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEDDDIQRLLIRA--- 177
Query: 292 VNNGLSKSVG-GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
LS G G R+ V D + + S GDAR ALN LE++A A
Sbjct: 178 ----LSAEEGFGGRLRVAEDVLAMMASAASGDARRALNILEVAADLA------------- 220
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYW 410
E ++DG V V+ D + Q +D+ G+ Y+ ISALHKS+RG+D D ++YW
Sbjct: 221 -EPDADG----VDSVSEDQLELVMQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYW 275
Query: 411 LARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCV 470
+ RML+GG PLY+ARRLVR ASED+G ADP AL + + A LG PE + LAQ V
Sbjct: 276 MCRMLDGGCDPLYVARRLVRIASEDIGNADPRALQLTLEAWDAQERLGSPEGELALAQAV 335
Query: 471 AYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD 530
YLA+APKS ++Y+A IR+ ++ VP+HLRNAPTKLMK +G+G+ Y Y D+
Sbjct: 336 IYLAMAPKSNAVYKAFNQCMADIRQD--KDFEVPVHLRNAPTKLMKSMGHGESYRYAHDE 393
Query: 531 P---SAKQSFLPPSLEGYKFLD 549
P +A + +LP ++ ++ +
Sbjct: 394 PDAFAAGEGYLPDAINERRYYE 415
>gi|302901862|ref|XP_003048527.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
77-13-4]
gi|256729460|gb|EEU42814.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
77-13-4]
Length = 547
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 211/499 (42%), Positives = 286/499 (57%), Gaps = 52/499 (10%)
Query: 60 PNQNPVQPKLDRFFHFQTKPSSAAA----NAVQEKEK---DREIEPSPLFKRLKTRHDVD 112
P + +QP R F+ P + A+ NA E R + K+ KT+
Sbjct: 75 PVKGALQPITGRKRTFEEGPGAGASQKTENATNGNENVTNGRTEQDGRAMKKTKTQR--- 131
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
APL+ERMRP ++DV GQD L+ PN +LRS + S+++PS+I WG GTGKT
Sbjct: 132 --------AAPLAERMRPRTLDDVFGQD-LVGPNGVLRSLIESSQVPSMILWGASGTGKT 182
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
T+A+ I V +F+ L+A ++GV +V+ ++A + ++T++F DE+HRFNK+
Sbjct: 183 TIARCIAQ--MVGSRFIELNATSTGVAEVKKLFQEAANDLALTGRKTIIFCDEIHRFNKA 240
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQD FL +E G++ IGATTENPSF + LLSRCR TL L DV +L+RA+ +
Sbjct: 241 QQDVFLKPVEAGTVTLIGATTENPSFKVAAALLSRCRTFTLQTLTTEDVVSILQRAIRE- 299
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
+SV + ++ I +L DGDAR ALN LE++
Sbjct: 300 ----EESVYPSTPLLDEAMITYLARFADGDARTALNLLELALSLTT-------------- 341
Query: 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
+G +T D K A K L YDRAG++HY+ ISA HKS+RGNDADAA+Y+LA
Sbjct: 342 --REG-------ITQADIKAAL-TKTLVYDRAGDQHYDTISAFHKSVRGNDADAALYYLA 391
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RML+ GE PL+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C
Sbjct: 392 RMLQSGEDPLFIARRMVVIASEDVGLADNTLLPLATATYTATQQIGMPEARIPLAHCTVA 451
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--D 530
L APKS YRAL A +RE VPLHLRNAPT+LM+++GYG Y Y P+ D
Sbjct: 452 LCNAPKSTRAYRALNNAYAALREPGVAGLPVPLHLRNAPTRLMRDLGYGAEYKYPPNYRD 511
Query: 531 PSAKQSFLPPSLEGYKFLD 549
KQ++LP L G +FL+
Sbjct: 512 GQVKQTYLPDELIGRRFLE 530
>gi|330998553|ref|ZP_08322373.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
gi|329568151|gb|EGG49970.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
Length = 423
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 191/420 (45%), Positives = 257/420 (61%), Gaps = 34/420 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP ++D +GQ HL+ P+++LR + S R+ S I WGPPG GKTTLA+ I +
Sbjct: 3 APLAERLRPQTLDDYIGQKHLVGPDAVLRKMIDSGRISSFILWGPPGVGKTTLAQIIAHK 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAVTSGVKDVR+ +E AR R + +LF+DE+HRF+KSQQDS L +
Sbjct: 63 LETP--FYTLSAVTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF +I PLLSRC++ L L D+ LL +AV+ + +
Sbjct: 121 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLTKDDLMELLHKAVE-------RDII 173
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + + GDAR LN LE+ E+DG
Sbjct: 174 LKTKHIEFRETDAMLRYSGGDARKLLNILELVV-------------------EADGTDQV 214
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V +T E Q LAYD+ GE HY++ISA KS+RG+D DAA+YWLARM+EGGE P
Sbjct: 215 V--ITDAVVAERLQQNPLAYDKGGELHYDIISAFIKSIRGSDPDAALYWLARMIEGGEDP 272
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRLV ASED+GLA+P AL A + ++A +G PE + LA+ YLA +PKS S
Sbjct: 273 SFIARRLVISASEDIGLANPNALLLANAAFEAVMKIGWPEGRIPLAEATVYLATSPKSNS 332
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+ + A +++R++ N VPLHLRNAPT+LM+E+GYGK Y Y D +Q FLP
Sbjct: 333 AYKGINDALQLVRQT--GNLPVPLHLRNAPTRLMEELGYGKDYKYAHDYQGHFVEQQFLP 390
>gi|288800898|ref|ZP_06406355.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
gi|288332359|gb|EFC70840.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
Length = 425
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 200/444 (45%), Positives = 266/444 (59%), Gaps = 44/444 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNS 181
PL+ER+RP ++ + VGQ H++ + LR + S +PS I WGPPG GKTTLA I ++
Sbjct: 4 PLAERLRPNSLEEYVGQQHIIGKGAPLRRIIDSKHGVPSFILWGPPGVGKTTLATIISHT 63
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ V F LSAVTSGVK+VR+ ++ A K R SN +LF+DE+HRF+KSQQDS L +
Sbjct: 64 IDVP--FYTLSAVTSGVKEVREVIDKATKERFFSNNAPILFIDEIHRFSKSQQDSLLGAV 121
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF +I PLLSRC+ L PL +D+E LL+RA+ +
Sbjct: 122 EKGVVTLIGATTENPSFEVIRPLLSRCQTYILQPLSKNDLEALLQRAITE---------- 171
Query: 302 GTRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
VE+ IE L GDAR LN LE+ V + DE
Sbjct: 172 --DVELQQRNIELRETDALLHFSGGDARKLLNILEL-------------VVDAFVGDEK- 215
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
++T D K+ Q LAYD+ GE HY++ISA KS+RG+D DAAIYWLARM+
Sbjct: 216 ------VIITNDFVKQCLQQNPLAYDKGGEMHYDIISAFIKSIRGSDPDAAIYWLARMIS 269
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GE P +IARRLV ASED+GLA+P AL A + + A +G PE + LA+ YLA +
Sbjct: 270 AGEDPKFIARRLVISASEDIGLANPNALLLANAAFDAVQKIGWPEGRIPLAEATIYLATS 329
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AK 534
PKS S Y A+ A ++ E+ N+ VPLHLRNAPT LMKE+GYG GY Y+ D P+ +
Sbjct: 330 PKSNSAYLAINKALDIVNET--GNQPVPLHLRNAPTTLMKEVGYGDGYKYSHDYPNNFIE 387
Query: 535 QSFLPPSLEGYKFLDWPKSNTTDK 558
Q ++P +L G + S+ +K
Sbjct: 388 QQYMPDALLGMRLWQAQHSSNEEK 411
>gi|281422083|ref|ZP_06253082.1| replication-associated recombination protein A [Prevotella copri
DSM 18205]
gi|281403872|gb|EFB34552.1| replication-associated recombination protein A [Prevotella copri
DSM 18205]
Length = 424
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 194/427 (45%), Positives = 258/427 (60%), Gaps = 34/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D VGQ HL+ ++LR + + R+ S I WGPPG GKTTLA+ + ++
Sbjct: 4 PLAERMRPHTLADYVGQQHLVGEGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIVAQTI 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSAVTSGVKDVR+ +E A+ R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 KVP--FFTLSAVTSGVKDVREVIERAKSGRFFNSASPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL+ D+E LL RA+ ++ V
Sbjct: 122 KGIVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKADLEGLLHRAI-------TQDVEL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + L GDAR LN LE+ ES G S V
Sbjct: 175 REKNIKLEETGALLRYSGGDARKLLNILELVV-------------------ESAGSSEIV 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T +E Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 216 --ITDKMVEEQLQQNPLAYDKQGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPQ 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V ASEDVGLA+P AL A + + +G PE + LA+ V YLA +PKS S
Sbjct: 274 FIARRVVISASEDVGLANPNALLLANAAFDTVMKIGWPEARIALAEAVVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y + A +R++ N VPLH+RNAPTKLMK++GY GY Y D P +Q +LP
Sbjct: 334 YLGINDALATVRQT--GNLPVPLHIRNAPTKLMKDLGYHDGYKYPHDYPGHFTEQQYLPD 391
Query: 541 SLEGYKF 547
L+ +F
Sbjct: 392 ELKDARF 398
>gi|427383203|ref|ZP_18879923.1| hypothetical protein HMPREF9447_00956 [Bacteroides oleiciplenus YIT
12058]
gi|425729117|gb|EKU91970.1| hypothetical protein HMPREF9447_00956 [Bacteroides oleiciplenus YIT
12058]
Length = 422
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 262/429 (61%), Gaps = 34/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAV+SGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVSSGVKDVREVIERAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLMELLQRAI--TTDHILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN L++ +++ PV
Sbjct: 176 RKIELKETTAMLRYSG--GDARKLLNILDL-VVSSEANDPV------------------- 213
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+E GE P
Sbjct: 214 -IITDATVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEAGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASEDVGLA+P AL A +C+ A +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDVGLANPNALLIANACFDAVMKVGWPEGRIPLAEATVYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG Y Y D P KQ FLP
Sbjct: 333 YMAINNALELVRET--GNLPVPLHLRNAPTKLMKQLGYGDNYKYAHDYPGHFVKQQFLPD 390
Query: 541 SLEGYKFLD 549
L+ + +
Sbjct: 391 ELKDRRLWE 399
>gi|392402526|ref|YP_006439138.1| AAA ATPase central domain protein [Turneriella parva DSM 21527]
gi|390610480|gb|AFM11632.1| AAA ATPase central domain protein [Turneriella parva DSM 21527]
Length = 424
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 203/445 (45%), Positives = 274/445 (61%), Gaps = 45/445 (10%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ERMRP ++ + VGQ HL+ ++LR AV S LPSII WGPPG GKTTLA
Sbjct: 3 PGAPLAERMRPKSLAEYVGQKHLVGEGAVLRRAVESKTLPSIILWGPPGVGKTTLA---- 58
Query: 180 NSVAVSYK--FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
N +AV K F LSA+ SGVKD+R+ +E A + + K VLF+DE+HRF+KSQQDS
Sbjct: 59 NILAVELKRPFYSLSAINSGVKDIREVIEKASGGGLFTEK-PVLFIDEIHRFSKSQQDSL 117
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
L +E G I IGATTENPSF +I+ LLSRC+V L L D+ LL A++ +
Sbjct: 118 LGAVETGKITLIGATTENPSFEVISALLSRCQVYILKNLDEADLLRLLHTAME--KDSFL 175
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE--ISAITAAVRVPVKEVKEVEQEDES 355
K+ R+++ A F S GDAR LN E I + +V K V E+ Q++
Sbjct: 176 KT---KRIQLAETAALFRLSG--GDARRLLNVFELVIDNLIGDPQVTDKVVLEIVQQNP- 229
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+ YD+AG+ HY++ISA KS+RG+D + A+YWLARM+
Sbjct: 230 -----------------------VLYDKAGDNHYDIISAFIKSIRGSDPNGAVYWLARMV 266
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGE L+IARR++ ASED+G A+P A+ A++C+QA + +G PE ++LAQ YLA
Sbjct: 267 EGGEDALFIARRMLIAASEDIGNANPTAMVVALNCFQAVNAIGYPEARIVLAQAATYLAT 326
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--A 533
+PKS + Y A+ AQ+V+RE+ N VPLHLRNAPT LMK+IGYG+GY Y D +
Sbjct: 327 SPKSNAAYAAINKAQEVVRET--GNLPVPLHLRNAPTSLMKDIGYGQGYEYAHDKAGNFS 384
Query: 534 KQSFLPPSLEGYKFLDWPKSNTTDK 558
Q +LP +L G K D P +N ++
Sbjct: 385 PQEYLPEALSGKKLYD-PGNNARER 408
>gi|430742756|ref|YP_007201885.1| AAA ATPase [Singulisphaera acidiphila DSM 18658]
gi|430014476|gb|AGA26190.1| AAA ATPase [Singulisphaera acidiphila DSM 18658]
Length = 431
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 203/433 (46%), Positives = 265/433 (61%), Gaps = 30/433 (6%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS-NRLPSIIFWGPPGTGKTTLAKAI 178
P APL+ERMRP I++ VGQ HL L+R + LPS+I WG PGTGKTTL + +
Sbjct: 25 PGAPLAERMRPRTIDEFVGQQHLTGEGKLVRRLIEDPGPLPSLILWGGPGTGKTTLGRLL 84
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+FV LSAV SGVKD+R+AV +A++ R + +RTVLF+DE+HRFNKSQQD+ L
Sbjct: 85 AQRAHA--RFVPLSAVLSGVKDLREAVVEAKRQR-RGGRRTVLFIDEIHRFNKSQQDALL 141
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +EDG++ +GATTENPSF + + LLSR RVL LNPL ++ +L+RA+ D GL
Sbjct: 142 PSVEDGTVSLVGATTENPSFEVNSALLSRSRVLILNPLGEEEISEILRRAMLDPERGLRA 201
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+V ++ + + L + GDARVAL AL+ AA R E SDG
Sbjct: 202 H----QVMMSDEDMRLLAHSAGGDARVALTALD-----AATRA---------TEPGSDGS 243
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+ + EA AYD+ GE+HYNL SAL KS+R +DADA +YWLAR++EGG
Sbjct: 244 R----RIDRETLVEALGRSRFAYDKGGEDHYNLASALIKSLRNSDADAGLYWLARLIEGG 299
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P++IARRL ASEDVGLADP A+ QA + + +G+PE L+Q YLA APK
Sbjct: 300 ADPVFIARRLCILASEDVGLADPQAMVQAAAAAEITRMIGLPEALYPLSQLTIYLARAPK 359
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSF- 537
S + RA AA + E VPLHLRNA T LMK GY +GY Y +DP AK
Sbjct: 360 SDIVKRAYHAAAADAAAT--PREPVPLHLRNAVTPLMKASGYAQGYRYVHNDPKAKDEMP 417
Query: 538 -LPPSLEGYKFLD 549
LP L G++++D
Sbjct: 418 CLPEPLRGHRYVD 430
>gi|253998904|ref|YP_003050967.1| recombination factor protein RarA [Methylovorus glucosetrophus
SIP3-4]
gi|253985583|gb|ACT50440.1| AAA ATPase central domain protein [Methylovorus glucosetrophus
SIP3-4]
Length = 440
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 192/433 (44%), Positives = 259/433 (59%), Gaps = 36/433 (8%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
+ P APL+ER+RP ++DVVGQ HLL LR A S +LPS+I WGPPG GKTTLA+
Sbjct: 8 NTPDAPLAERLRPATLDDVVGQKHLLGEGKPLRLAFQSGKLPSMILWGPPGVGKTTLARL 67
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I N+ +F+ LSAV SG+KD+R+AVE A+ +S +RT+LFVDEVHRFNK QQD+F
Sbjct: 68 IANTADA--EFIPLSAVLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNKGQQDAF 125
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E G I FIGATTENPSF + + LLSR RV L L D+ LL+RA +++ ++
Sbjct: 126 LPFVESGLITFIGATTENPSFEVNSALLSRARVFVLQALSEADLAELLERARVNMSPEMA 185
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
++ + E + + DGDAR LN +E AA+ + E+
Sbjct: 186 ---------LSDEVKEQVLAYADGDARRLLNFVE-GLFNAALTSGLTEINA--------- 226
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
+ + K +D+ GE Y+ ISALHKS+RG++ DAA+YW RM++G
Sbjct: 227 ----------EFLQSTMASKLRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFLRMIDG 276
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
G PLY+ RRL+R A ED+G+ADP A + Q LG PE + L+ V Y A+AP
Sbjct: 277 GADPLYLGRRLIRMAVEDIGIADPRAQTMTLEACQIYERLGSPEGELALSNAVIYCAVAP 336
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT---PDDPSAK 534
KS + Y A A+ + + +N VPLHLRNAPTKLMKE+ YGK Y Y PD +A
Sbjct: 337 KSNAAYMAYNQAKAFVAQDKSRN--VPLHLRNAPTKLMKELDYGKEYRYAHNEPDAYAAG 394
Query: 535 QSFLPPSLEGYKF 547
+ + P LE +F
Sbjct: 395 EQYFPDDLEAIQF 407
>gi|330503298|ref|YP_004380167.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
gi|328917584|gb|AEB58415.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
Length = 441
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 262/430 (60%), Gaps = 34/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+H+L+P LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRATSLDEYVGQEHVLAPGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAK-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 70 VTDAHFETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ D K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVNRALSD-----PKGLGE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + DA + L + DGD R LN LE +A ++ ++D G
Sbjct: 185 RHLSLPDDAFQILLAAADGDGRRLLNFLENAA-------------DLAEDDGEIGVELLQ 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L L D++ F D+ GE Y+ ISALHKS+RG+ D A+YW ARML+GG PL
Sbjct: 232 NL--LGDSRRRF-------DKGGEAFYDQISALHKSVRGSSPDGALYWYARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASED+G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEDIGNADPRALTLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E Q VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAEQGSQE--VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKFLD 549
SL+ ++ D
Sbjct: 401 ESLQPRQYYD 410
>gi|402831878|ref|ZP_10880549.1| MgsA AAA+ ATPase, C-terminal domain protein [Capnocytophaga sp.
CM59]
gi|402280466|gb|EJU29174.1| MgsA AAA+ ATPase, C-terminal domain protein [Capnocytophaga sp.
CM59]
Length = 428
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 192/438 (43%), Positives = 265/438 (60%), Gaps = 37/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRPV + D + Q HL+ LR + PS+IFWGPPGTGKTTLA I
Sbjct: 6 PLAERMRPVRLADYISQSHLVGEKGALRMQIEKGITPSLIFWGPPGTGKTTLAYIIAKES 65
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSA++SG+K+VRD +E +++ + + + + ++F+DE+HRFNK+QQDS L +
Sbjct: 66 QRA--FFSLSAISSGIKEVRDIIEKSKREQGLFTARNPIIFIDEIHRFNKTQQDSLLEAV 123
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + IGATTENPSF +I LLSRC+V TL P + D+ LL RA+ + V
Sbjct: 124 ERGWVTLIGATTENPSFEVIPALLSRCQVYTLKPFEKEDLLALLDRAI-------KQDVE 176
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + E L DGD R LN E+ T A Q +E
Sbjct: 177 LKQKHITLKETEALLRLSDGDGRKLLNTFELIVNTFA------------QGEE------- 217
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T D E Q + YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 218 -IVITNDKVLEIVQQNTVLYDKTGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGEDV 276
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASED+G A+P+AL A + +QA +G PE +IL+QC YLA +PKS +
Sbjct: 277 KFIARRMLILASEDIGNANPMALVLANNTFQAVTVIGYPESRIILSQCAIYLASSPKSNA 336
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+A+G AQ+++++ N VPLHLRNAPT LMKE+ YGK Y Y D P Q F+P
Sbjct: 337 SYKAIGKAQQLVKQQ--GNLPVPLHLRNAPTTLMKELSYGKDYKYAHDYPYNFVFQDFMP 394
Query: 540 PSLEG---YKFLDWPKSN 554
+L+G Y+ D PK N
Sbjct: 395 DALQGMTLYEPCDNPKEN 412
>gi|365092234|ref|ZP_09329382.1| recombination factor protein RarA [Acidovorax sp. NO-1]
gi|363415358|gb|EHL22485.1| recombination factor protein RarA [Acidovorax sp. NO-1]
Length = 452
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 262/426 (61%), Gaps = 38/426 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ H+L P LR A S R S I WGPPG GKTT+A+ + +
Sbjct: 20 HQPLAERLRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMAD 79
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+R+AVE A R ++RT++FVDEVHRFNKSQQD+FLP
Sbjct: 80 --AFDAQFISISAVLGGVKDIREAVERAEAARDGLMHQRTIVFVDEVHRFNKSQQDAFLP 137
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF + + LLSR V L PL D++ ++ A+ L
Sbjct: 138 HVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLSEQDLKQIV--ALAQAEKALPA- 194
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ + AI+ L + DGDAR LN LE A+ A QE S+
Sbjct: 195 -------IENVAIDRLVAYADGDARRLLNTLETLAMAAT------------QEKLSEITD 235
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+GG
Sbjct: 236 AWLLKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGGA 287
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APKS
Sbjct: 288 DPRYMARRLVRMASEDIGLADPRALRLALDATEVYERLGSPEGELALAECVVYLAVAPKS 347
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y+A AA+ +++ VP+HLRNAPTKLMK++ YGKGY Y D+ +A ++
Sbjct: 348 NAVYKAYNAARAWVKQD--GTRPVPMHLRNAPTKLMKQLDYGKGYRYAHDEEGGFAAGEN 405
Query: 537 FLPPSL 542
+LP +
Sbjct: 406 YLPEGM 411
>gi|317478867|ref|ZP_07938017.1| ATPase [Bacteroides sp. 4_1_36]
gi|316904949|gb|EFV26753.1| ATPase [Bacteroides sp. 4_1_36]
Length = 423
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 200/438 (45%), Positives = 266/438 (60%), Gaps = 35/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPRTLDEYIGQKHLVGPGAVLRKMIDVGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIERAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+ +
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKDDLLELLQRAITT-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ +S+ P
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELVI-------------------DSEATDP-- 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VLITDDMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLLANACFDTLMKVGWPEGRIPLAEATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y D P KQ FLP
Sbjct: 333 YMAINNALELVRET--GNLPVPLHLRNAPTKLMKQLGYGEKYKYAHDYPGNFVKQQFLPD 390
Query: 541 SLEGYKFLDWPKSNTTDK 558
L+ + + P+ N ++
Sbjct: 391 ELKDRRIWE-PQLNPAEQ 407
>gi|313201003|ref|YP_004039661.1| aaa atpase central domain-containing protein [Methylovorus sp.
MP688]
gi|312440319|gb|ADQ84425.1| AAA ATPase central domain protein [Methylovorus sp. MP688]
Length = 440
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 192/433 (44%), Positives = 258/433 (59%), Gaps = 36/433 (8%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
+ P APL+ER+RP ++DVVGQ HLL LR A S +LPS+I WGPPG GKTTLA+
Sbjct: 8 NTPDAPLAERLRPATLDDVVGQKHLLGEGKPLRLAFQSGKLPSMILWGPPGVGKTTLARL 67
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I N+ +F+ LSAV SG+KD+R+AVE A+ +S +RT+LFVDEVHRFNK QQD+F
Sbjct: 68 IANTA--DAEFIPLSAVLSGIKDIREAVERAQHTLQQSGRRTILFVDEVHRFNKGQQDAF 125
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP +E G I FIGATTENPSF + + LLSR RV L L D+ LL+RA ++ ++
Sbjct: 126 LPFVESGLITFIGATTENPSFEVNSALLSRARVFVLQALSEADLAELLERARANMAPDMA 185
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
++ + E + + DGDAR LN +E AA+ + E+
Sbjct: 186 ---------LSDEVKEQVLAYADGDARRLLNFVE-GLFNAALTSGLTEINA--------- 226
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
+ + K +D+ GE Y+ ISALHKS+RG++ DAA+YW RM++G
Sbjct: 227 ----------EFLQSTMASKLRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFLRMIDG 276
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
G PLY+ RRL+R A ED+G+ADP A + Q LG PE + L+ V Y A+AP
Sbjct: 277 GADPLYLGRRLIRMAVEDIGIADPRAQTMTLEACQIYERLGSPEGELALSNAVIYCAVAP 336
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT---PDDPSAK 534
KS + Y A A+ + + +N VPLHLRNAPTKLMKE+ YGK Y Y PD +A
Sbjct: 337 KSNAAYMAYNQAKAFVAQDKSRN--VPLHLRNAPTKLMKELDYGKEYRYAHNEPDAYAAG 394
Query: 535 QSFLPPSLEGYKF 547
+ + P LE +F
Sbjct: 395 EQYFPDDLEAIQF 407
>gi|171677199|ref|XP_001903551.1| hypothetical protein [Podospora anserina S mat+]
gi|170936667|emb|CAP61326.1| unnamed protein product [Podospora anserina S mat+]
Length = 570
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 204/461 (44%), Positives = 280/461 (60%), Gaps = 41/461 (8%)
Query: 93 DREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSA 152
+R+ +PL KR KT APL+ERMRP +++DV GQD L+ PN +LRS
Sbjct: 131 ERDPGAAPLSKRSKTHR-----------AAPLAERMRPDSLDDVFGQD-LVGPNGVLRSL 178
Query: 153 VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR 212
+ ++R+PS+I WG GTGKTT+A+ I V +F+ L+A ++GV +V+ +A
Sbjct: 179 IETDRVPSMILWGGSGTGKTTIARCIARRVG--SRFIELNATSTGVAEVKKFFAEAANEL 236
Query: 213 VKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLT 272
+ ++T++F DE+HRF+KSQQD FL +E G+I IGATTENPSF + LLSRCR T
Sbjct: 237 NLTGRKTIIFCDEIHRFSKSQQDVFLKPVEAGTITLIGATTENPSFKVQAALLSRCRTFT 296
Query: 273 LNPLKPHDVEILLKRAV--DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330
L L D++ +L RA+ + V G+ S ++ + + +L + DGDAR ALN L
Sbjct: 297 LASLTREDLQRILVRAIQAEIVEEGIELSP-----LIDEELLTYLSAFADGDARTALNLL 351
Query: 331 EISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYN 390
E++ + G +P +T DD K A K L YDRAG++HY+
Sbjct: 352 ELALSLTT-------------RPQGGGEAP----LTKDDIKAAL-TKTLVYDRAGDQHYD 393
Query: 391 LISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSC 450
ISA HK++RG+D+DAA+Y+LARML+ GE PL+IARR+V ASEDVGLAD L A +
Sbjct: 394 TISAFHKAVRGSDSDAALYYLARMLQSGEDPLFIARRMVVIASEDVGLADNSLLPLATAT 453
Query: 451 YQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNA 510
Y A +GMPE + LA C L LAPKS YRAL A +RE + VPLHLRNA
Sbjct: 454 YTATQQIGMPEARIPLAHCTVALCLAPKSTRAYRALNNAFSALREPGVASLPVPLHLRNA 513
Query: 511 PTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
PT+LMK++GYG Y Y P+ D +Q +LP L G +FL+
Sbjct: 514 PTRLMKDLGYGAEYKYPPNYKDGKVRQEYLPEELRGRRFLE 554
>gi|218133225|ref|ZP_03462029.1| hypothetical protein BACPEC_01089 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992098|gb|EEC58102.1| recombination factor protein RarA [[Bacteroides] pectinophilus ATCC
43243]
Length = 447
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 263/430 (61%), Gaps = 28/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP + +VVGQ H++ + LL A+ ++++ SIIF+GPPGTGKTTLAK I N+
Sbjct: 20 SPLASRMRPETLEEVVGQQHIIGKDRLLYRAIKADKISSIIFYGPPGTGKTTLAKVIANT 79
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S F ++A +G KD+ D V A+ ++T+LFVDE+HRFNK QQD LP +
Sbjct: 80 T--SADFCQINATVAGKKDMEDVVAKAKDNIGMYGRKTILFVDEIHRFNKGQQDYLLPFV 137
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR V L PL+ D+ L+KRA+ D G+ G
Sbjct: 138 EDGTIILIGATTENPYFEVNQALISRSAVFELRPLEKDDILKLIKRAISDDKKGM----G 193
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ DA EFL +GDAR ALNA+E++ +T + DG
Sbjct: 194 AYGALIDDDASEFLADCANGDARNALNAVELAVLTTS--------------PSEDGHIH- 238
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T+D A + Q + L YD+ G+ HY+ ISA KSMRG+D DAA+Y+LARML GE
Sbjct: 239 ---ITIDVASDCIQKRVLKYDKTGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDV 295
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL AV+ QA LGMPE ++LAQ V Y+A APKS +
Sbjct: 296 AFIARRIMICASEDVGNADPRALEVAVAASQAVERLGMPEARIVLAQAVTYIACAPKSNA 355
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ AA +R + +P HLR+A K ++G+G+GY Y D P+ Q +LP
Sbjct: 356 AYMAVDAALDRVRNE--KTAAIPTHLRDAHYKGAAKLGHGEGYRYAHDYPNHYVDQQYLP 413
Query: 540 PSLEGYKFLD 549
L+G KF +
Sbjct: 414 DELKGTKFYN 423
>gi|387770294|ref|ZP_10126477.1| recombination factor protein RarA [Pasteurella bettyae CCUG 2042]
gi|386904656|gb|EIJ69445.1| recombination factor protein RarA [Pasteurella bettyae CCUG 2042]
Length = 446
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 190/425 (44%), Positives = 270/425 (63%), Gaps = 33/425 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++ GQ HLL LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTNLDEYCGQQHLLGVGKPLRKAIEAGHAHSMIFWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L + LLSR RV L L DV +LK+A+++ GL G
Sbjct: 132 DGTIIFIGATTENPSFELNSALLSRARVYILKSLTTEDVVQVLKQALNNKERGL----GN 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD-GCSPY 361
++ + +E L GDAR++LN LE+ V+ DE++ G
Sbjct: 188 QKLNLEEGILEVLADYVHGDARLSLNCLELM---------------VDMADETENGKKID 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L+T E + +D+ G+ Y+LISA+HKS+RG+ DAA+YW AR++ G P
Sbjct: 233 HTLLT-----EVLGERQARFDKQGDRFYDLISAVHKSIRGSAPDAALYWYARIITAGGDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS +
Sbjct: 288 LYVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+YRA A+++ +ES + VPLHLRNAPT LM+ +GYG Y Y D+P +A +++
Sbjct: 348 VYRAFNQAKQLAKESADFD--VPLHLRNAPTNLMENLGYGTEYRYAHDEPNAYAAGENYF 405
Query: 539 PPSLE 543
P L+
Sbjct: 406 PIELK 410
>gi|210608530|ref|ZP_03287903.1| hypothetical protein CLONEX_00082, partial [Clostridium nexile DSM
1787]
gi|210152981|gb|EEA83987.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
Length = 443
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 265/428 (61%), Gaps = 28/428 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP + +VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I N+
Sbjct: 16 SPLASRMRPKTLEEVVGQQHIIGQDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F ++A +G KD+ + V A+ ++T+LFVDE+HRFNK QQD LP +
Sbjct: 76 T--SAQFTQINATVAGKKDMEEVVRKAKDNLGMYGQKTILFVDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + + L+SR V L L D+++LLKRAV D G+ G
Sbjct: 134 EDGTLILIGATTENPYFEVNSALISRSSVFELRALTKEDIKVLLKRAVYDEIKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R +++ DA+EFL GDAR ALNA+E+ +T + + DG
Sbjct: 190 SYRADIDDDALEFLADIAGGDARNALNAIELGILTT-------------ERSKEDGKIH- 235
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A+E Q + + YD+ G+ HY+ ISA KS+RG+D DAA+Y+LA+ML GE
Sbjct: 236 ---ITLDVAQECIQKRVVRYDKTGDNHYDTISAFIKSLRGSDPDAAVYYLAKMLYAGEDI 292
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL AVS QA LGMPE ++LAQ V Y+A APKS +
Sbjct: 293 KFIARRIMISASEDVGNADPNALTVAVSAAQAVERLGMPEARIVLAQAVTYIASAPKSNA 352
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ AA + +R VP HL+++ K ++G+G GY Y D P +Q +LP
Sbjct: 353 AYLAVDAALENVR---NYKTTVPAHLQDSHYKGAAKLGHGIGYKYAHDYPEHYVEQQYLP 409
Query: 540 PSLEGYKF 547
++ KF
Sbjct: 410 DEIKDAKF 417
>gi|329114603|ref|ZP_08243362.1| Replication-associated recombination protein A [Acetobacter pomorum
DM001]
gi|326696083|gb|EGE47765.1| Replication-associated recombination protein A [Acetobacter pomorum
DM001]
Length = 453
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 198/440 (45%), Positives = 263/440 (59%), Gaps = 49/440 (11%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
P PL++R+RP + DVVGQ HLL P L + L S+I WG PG GKTT+A+ +
Sbjct: 34 APTQPLADRLRPQRLEDVVGQAHLLGPEGALTRMLERGSLASLILWGGPGVGKTTIARLL 93
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
A KFV LSAV SGV D++ A E+AR+ + ++ T+LFVDE+HRFN++QQD FL
Sbjct: 94 AQ--AAGLKFVQLSAVFSGVADLKKAFENARR-QAEAGGGTLLFVDEIHRFNRAQQDGFL 150
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
PV+EDG++V +GATTENPSF L + LLSRC+V+ LN L E LL RA ++
Sbjct: 151 PVVEDGTVVLVGATTENPSFALNSALLSRCQVMVLNRLDDPACEALLVRAEEET------ 204
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G + + D L + DGD R LN +E ++ ++ E D
Sbjct: 205 ---GRPLPLTEDGRVTLRAMADGDGRYLLNMVE-------------QLLSLKTEKPLDAQ 248
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
AL L + + YDR EEHYNLISALHKSMRG+D DAA+YW ARMLEGG
Sbjct: 249 ----ALSRL------LAKRAILYDRDREEHYNLISALHKSMRGSDPDAALYWFARMLEGG 298
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P Y+ARR+ RFA+ED+G+ADP AL AV+ ++ LG PE + LAQ V +LA APK
Sbjct: 299 EDPRYLARRMTRFAAEDIGMADPHALPLAVAAWETYERLGSPEGELALAQLVVHLATAPK 358
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--------- 529
S ++Y+A GAA++ + + P H+ NAPTKLM++IGYGKGY Y D
Sbjct: 359 SNAVYKAYGAARRAAKATGSLMP--PAHILNAPTKLMQDIGYGKGYQYDHDAEEGFSGQN 416
Query: 530 ---DPSAKQSFLPPSLEGYK 546
D +Q+F P+ GY+
Sbjct: 417 YFPDGMRRQNFYNPTGRGYE 436
>gi|321264368|ref|XP_003196901.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
1) [Cryptococcus gattii WM276]
gi|317463379|gb|ADV25114.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
1), putative [Cryptococcus gattii WM276]
Length = 627
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 202/448 (45%), Positives = 268/448 (59%), Gaps = 38/448 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNS 181
P++ER RP+ I+ +GQ ++ P SLLR + + +L S I WGPPG GKTTLA+ I S
Sbjct: 141 PMAERSRPLEISQYIGQSDIVGPGSLLRVQIEAGKLIGSCILWGPPGCGKTTLARLIAKS 200
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+K LSA +SG +DVR E A+ + +RTVL +DE+HRFN++QQD LP +
Sbjct: 201 SGADFKE--LSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMIDEIHRFNRAQQDLLLPYV 258
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF + LLSRC+V TL+ P ++I+L+ AV ++ S+ +
Sbjct: 259 EKGWIQLIGATTENPSFKVNGALLSRCQVFTLHAHSPESLQIILRNAVQTISE--SEPIP 316
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA--------------AVRVPVKEVK 347
E+ I FL DGDAR ALN LE++ T A V ++VK
Sbjct: 317 YHPPEL----IPFLADVADGDARQALNGLELALRTCQTMDEAARAEKSQRAKFVGDEKVK 372
Query: 348 EVEQEDESDGCSPYVALVT---------LDDAKEAFQCKHLAYDRAGEEHYNLISALHKS 398
E Q+D D +D + Q Y+R GEE Y++ISALHK
Sbjct: 373 EERQKDVFDDAVEEAEEEDQQKKRDEEIMDAVRRGLQ---KGYNRTGEERYDMISALHKC 429
Query: 399 MRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLG 458
+RG+D AA+YWLARM+ GGE PLYIARRL+ ASEDVGLAD AL A++ YQAC +G
Sbjct: 430 LRGSDGSAAMYWLARMITGGEDPLYIARRLIVVASEDVGLADNHALPLAMATYQACQTIG 489
Query: 459 MPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEI 518
+PEC + LA CVAYLA APKS Y+A GAA+++ ++ GVPL +RNAPT++MK++
Sbjct: 490 LPECRINLAHCVAYLAEAPKSTRSYKAYGAAERLA--TMPPLPGVPLQIRNAPTQIMKKL 547
Query: 519 GYGKGYIYTPD-DPSAKQSFLPPSLEGY 545
GYGK Y Y PD +LP SL Y
Sbjct: 548 GYGKEYAYNPDYGHPVHNDYLPESLLQY 575
>gi|421852910|ref|ZP_16285593.1| AAA ATPase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371478909|dbj|GAB30796.1| AAA ATPase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 453
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/440 (45%), Positives = 262/440 (59%), Gaps = 49/440 (11%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
P PL++R+RP + DVVGQ HLL P L + L S+I WG PG GKTT+A+ +
Sbjct: 34 APMQPLADRLRPQRLEDVVGQAHLLGPEGALTRMLERGSLASLILWGGPGVGKTTIARLL 93
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
A KFV LSAV SGV D++ A E+AR+ + + T+LFVDE+HRFN++QQD FL
Sbjct: 94 AQ--AAGLKFVQLSAVFSGVADLKKAFENARR-QAEVGGGTLLFVDEIHRFNRAQQDGFL 150
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
PV+EDG++V +GATTENPSF L + LLSRC+V+ LN L E LL RA ++
Sbjct: 151 PVVEDGTVVLVGATTENPSFALNSALLSRCQVMVLNRLDDPACEALLVRAEEET------ 204
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G + + D L + DGD R LN +E ++ ++ E D
Sbjct: 205 ---GRPLPLTEDGRVTLRAMADGDGRYLLNMVE-------------QLLSLKTEKPLDAQ 248
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
AL L + + YDR EEHYNLISALHKSMRG+D DAA+YW ARMLEGG
Sbjct: 249 ----ALSRL------LAKRAILYDRDREEHYNLISALHKSMRGSDPDAALYWFARMLEGG 298
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P Y+ARR+ RFA+EDVG+ADP AL AV+ ++ LG PE + LAQ V +LA APK
Sbjct: 299 EDPRYLARRMTRFAAEDVGMADPHALPLAVAAWETYERLGSPEGELALAQLVVHLATAPK 358
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--------- 529
S ++Y+A GAA++ + + P H+ NAPTKLM++IGYGKGY Y D
Sbjct: 359 SNAVYKAYGAARRAAKATGSLMP--PAHILNAPTKLMQDIGYGKGYQYDHDAEEGFSGQN 416
Query: 530 ---DPSAKQSFLPPSLEGYK 546
D +Q+F P+ GY+
Sbjct: 417 YFPDGMKRQNFYNPTGRGYE 436
>gi|167752814|ref|ZP_02424941.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
gi|167659883|gb|EDS04013.1| ATPase, AAA family [Alistipes putredinis DSM 17216]
Length = 423
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/428 (45%), Positives = 260/428 (60%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ N + R + + +PS I WGPPG GKTTLAK + ++
Sbjct: 4 PLAERLRPRTLDEYIGQAHLVGQNGVFRKFLETGNVPSFILWGPPGVGKTTLAKIVATTL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVK+VR+ +E ARK + +K +LF+DE+HRFNKSQQDS L +E
Sbjct: 64 --KRPFYTLSAVTSGVKEVREVLESARKQKFFDSKPPILFIDEIHRFNKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I+PLLSRC+V L P+ +++ LL RA+ +
Sbjct: 122 QGVVTLIGATTENPSFEVISPLLSRCQVYILQPMTDGELQTLLDRAL-----ATDPELKT 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+EV F S GDAR LN L+I IT A V + + +D +
Sbjct: 177 REIEVQETEALFRFSG--GDARKLLNILDI--ITGAANGKVT----ITNQYVTDCLQQNI 228
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL YD+ GE+HY++ISA KS+RG+D +AAIY+LARML GGE+P
Sbjct: 229 AL----------------YDKNGEQHYDVISAFIKSVRGSDPNAAIYYLARMLAGGEEPR 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+ LA+P AL A +C+ H +GMPE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVILASEDISLANPNALLLANACFDTVHKIGMPEARITLAETTIYLATSPKSKSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS-AKQSFLPPS 541
Y A+ A + E N VPLHLRNAPTKLM + GYGKGY Y D A+ F+P +
Sbjct: 333 YMAINQALSFV-EHDTTNRPVPLHLRNAPTKLMDQAGYGKGYKYAHDYGGFAELEFMPET 391
Query: 542 LEGYKFLD 549
L+G KF +
Sbjct: 392 LKGKKFYE 399
>gi|189466213|ref|ZP_03014998.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
17393]
gi|189434477|gb|EDV03462.1| recombination factor protein RarA [Bacteroides intestinalis DSM
17393]
Length = 424
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 262/429 (61%), Gaps = 34/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIERAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RAV + + K
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLMELLQRAV--TTDHILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN L++ S+ P V
Sbjct: 176 RKIELKETTAMLRYSG--GDARKLLNILDLVV-------------------SSEANDPVV 214
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + E Q LAYD+ GE HY++ISA KS+RG+D D A+YWLARM+E GE P
Sbjct: 215 --ITDEIVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAVYWLARMVEAGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P A+ A +C+ A +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNAMLIANACFDAVMKVGWPEGRIPLAEATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG Y Y+ D P KQ F+P
Sbjct: 333 YIAINNALELVRET--GNLPVPLHLRNAPTKLMKQLGYGDNYKYSHDYPGHFVKQQFMPD 390
Query: 541 SLEGYKFLD 549
L+ + +
Sbjct: 391 ELKKRRLWE 399
>gi|340622740|ref|YP_004741192.1| Replication-associated recombination protein A [Capnocytophaga
canimorsus Cc5]
gi|339903006|gb|AEK24085.1| Replication-associated recombination protein A [Capnocytophaga
canimorsus Cc5]
Length = 425
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 189/440 (42%), Positives = 274/440 (62%), Gaps = 38/440 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP +++ VGQ+HL+ N LR + S LPS+I WGPPGTGKTTLA+ I
Sbjct: 2 NTPLAERMRPTHLDSYVGQEHLVGENGSLRKQIESGWLPSLILWGPPGTGKTTLAQIIAQ 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ F LSA++SG+K+VR+ +E +++ + + K ++F+DE+HRFNK+QQDS L
Sbjct: 62 QSRRA--FFTLSAISSGIKEVREVIEKSKQNSGLFATKNPIVFIDEIHRFNKTQQDSLLG 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I IGATTENPSF +I LLSRC++ TLN + +D+E LLK A++ +
Sbjct: 120 AVEKGWITLIGATTENPSFEVIPALLSRCQIYTLNSFERNDLEKLLKNAIEK-----DEI 174
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ R+ ++ E L GD R LN E+ T E E+
Sbjct: 175 LKKKRITLSE--TEALIRLSGGDGRKLLNTFELIMNTF-------EASEI---------- 215
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++T + + Q + YD+AGE+HY+++SA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 216 ----IITNEKVMQVVQKNTVLYDKAGEQHYDIVSAFIKSIRGSDPNAAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARR++ ASED+G A+P AL A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 272 DVKFIARRMLILASEDIGNANPTALILANNTFQAVTTIGYPEARIILSQCAVYLAASPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
+ Y A+ AQ++++++ + VP+HLRNAPTKLMKE+ YGK Y Y+ D + A Q F
Sbjct: 332 NASYMAINKAQQLVKQT--GDLSVPIHLRNAPTKLMKELNYGKDYKYSHDFENNFAFQDF 389
Query: 538 LPPSLEG---YKFLDWPKSN 554
LP L+G Y+ D P+ N
Sbjct: 390 LPEDLQGTTLYEPGDNPREN 409
>gi|345429987|ref|YP_004823107.1| recombination protein [Haemophilus parainfluenzae T3T1]
gi|301156050|emb|CBW15521.1| recombination protein [Haemophilus parainfluenzae T3T1]
Length = 446
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 270/428 (63%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I N +
Sbjct: 15 PLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIANRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+++E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGVKEIRESIERAKQNRL-ADRQTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L L ++E +LK+A+ D GL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYLLKSLTIAEIEQVLKQAISDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ A+ E E + D
Sbjct: 189 -RLVLEENLLQVLAEYVNGDARLALNCLELMVDMAS---------EAENGKKLDR----- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL KE + +D+ G+ Y+LISALHKS+RG+ ADAA+YW AR++ G PL
Sbjct: 234 ---TL--LKEVLGERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ +E + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YNAFNAAKQHAKEF--PDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|389792611|ref|ZP_10195798.1| recombination factor protein RarA [Rhodanobacter fulvus Jip2]
gi|388436117|gb|EIL92996.1| recombination factor protein RarA [Rhodanobacter fulvus Jip2]
Length = 445
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 265/430 (61%), Gaps = 35/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++++VGQ L+ P+ LR A+ + ++ S++ WGPPG GKTTLA +
Sbjct: 21 PLAERMRPRSLDEIVGQQRLVGPDKALRRALEAGKIHSMVLWGPPGCGKTTLALLVARYA 80
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ +SAV SG+ DVR A+ +A ++ +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 81 DADFR--AISAVLSGLPDVRKALAEA-EVNFAQGRRTVLFVDEVHRFNKTQQDAFLPHIE 137
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+FIGATTENPSF L + LLSRCRV L P+ D+ LKRA+ D GL G
Sbjct: 138 RGVIIFIGATTENPSFELNSALLSRCRVHVLEPVSGDDIVAALKRALADSERGL----GE 193
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++V+ ++++ + DGD R AL LEI+A E+ + ++ DES
Sbjct: 194 LQLQVSDESLDSIAQAADGDVRRALTLLEIAA----------ELADDKRVDES------- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL + + +D+ GE+ Y+ ISALHKS+R +D DAA+YWL RML+GG PL
Sbjct: 237 ---TL---TQVLADRTRRFDKQGEQFYDQISALHKSVRSSDPDAAVYWLCRMLDGGVDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ R A EDVGLA+P A A+ + LG PE + LAQ +LA+APKS +
Sbjct: 291 YLARRMTRMAVEDVGLAEPRAWRMALDAWDTYERLGSPEGELGLAQLAIWLAIAPKSNAA 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y A A+ +RE G VP+HLRNAPTKLMK +GYGKGY Y D Q LP
Sbjct: 351 YMAYNKARAAVRE--GGTLEVPMHLRNAPTKLMKGMGYGKGYQYDHDAEGGVALDQQCLP 408
Query: 540 PSLEGYKFLD 549
+L G F +
Sbjct: 409 DALVGTVFYE 418
>gi|421849507|ref|ZP_16282486.1| AAA ATPase [Acetobacter pasteurianus NBRC 101655]
gi|371459694|dbj|GAB27689.1| AAA ATPase [Acetobacter pasteurianus NBRC 101655]
Length = 453
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/440 (45%), Positives = 262/440 (59%), Gaps = 49/440 (11%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
P PL++R+RP + DVVGQ HLL P L + L S+I WG PG GKTT+A+ +
Sbjct: 34 APMQPLADRLRPQRLEDVVGQAHLLGPEGALTRMLERGSLASLILWGGPGVGKTTIARLL 93
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
A KFV LSAV SGV D++ A E+AR+ + + T+LFVDE+HRFN++QQD FL
Sbjct: 94 AQ--AAGLKFVQLSAVFSGVADLKKAFENARR-QAEIGGGTLLFVDEIHRFNRAQQDGFL 150
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
PV+EDG++V +GATTENPSF L + LLSRC+V+ LN L E LL RA ++
Sbjct: 151 PVVEDGTVVLVGATTENPSFALNSALLSRCQVMVLNRLDDPACEALLVRAEEET------ 204
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G + + D L + DGD R LN +E ++ ++ E D
Sbjct: 205 ---GRPLPLTEDGRVTLRAMADGDGRYLLNMVE-------------QLLSLKTEKPLDAQ 248
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
AL L + + YDR EEHYNLISALHKSMRG+D DAA+YW ARMLEGG
Sbjct: 249 ----ALSRL------LAKRAILYDRDREEHYNLISALHKSMRGSDPDAALYWFARMLEGG 298
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P Y+ARR+ RFA+EDVG+ADP AL AV+ ++ LG PE + LAQ V +LA APK
Sbjct: 299 EDPRYLARRMTRFAAEDVGMADPHALPLAVAAWETYERLGSPEGELALAQLVVHLATAPK 358
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--------- 529
S ++Y+A GAA++ + + P H+ NAPTKLM++IGYGKGY Y D
Sbjct: 359 SNAVYKAYGAARRAAKATGSLMP--PAHILNAPTKLMQDIGYGKGYQYDHDAEEGFSGQN 416
Query: 530 ---DPSAKQSFLPPSLEGYK 546
D +Q+F P+ GY+
Sbjct: 417 YFPDGMKRQNFYNPTGRGYE 436
>gi|390943436|ref|YP_006407197.1| AAA ATPase [Belliella baltica DSM 15883]
gi|390416864|gb|AFL84442.1| AAA ATPase [Belliella baltica DSM 15883]
Length = 420
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 197/439 (44%), Positives = 263/439 (59%), Gaps = 40/439 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP ++++++GQ+HL + S L A+ S +PS+I WGPPG GKTT+A I N
Sbjct: 3 NTPLAERMRPTSLDELIGQEHLSAQTSFLYKAIKSGNVPSLILWGPPGVGKTTIANIIAN 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA++SGVKD+R+ +E AR VLF+DE+HRFNKSQQD+ L
Sbjct: 63 EIKAP--FYTLSAISSGVKDIREVIEKAR-----FQMGVVLFIDEIHRFNKSQQDALLGA 115
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF + LLSRC+V TLNPL ++E +L +A L K V
Sbjct: 116 VEKGVIRLIGATTENPSFEVNAALLSRCQVFTLNPLGKSELEGMLVQA-------LEKDV 168
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ V+ E L GD R LN EI V + D C
Sbjct: 169 LLKKKSVDLKETEALLRLSGGDGRKLLNLFEI----------------VIEGINDDPCVI 212
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
LVT Q K YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 213 TNELVT-----TIAQQKVALYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGED 267
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARRLV ASED+G A+P AL A +C++A +G PE +IL+QCV YLA +PKS
Sbjct: 268 VKFIARRLVILASEDIGNANPNALLLATNCFEAVKIIGYPEARIILSQCVTYLASSPKSN 327
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y A+ AQ ++RE + VPLHLRNAPTKLMK++ YGK Y Y+ D Q FL
Sbjct: 328 ASYMAINKAQALVREK--GDLSVPLHLRNAPTKLMKDLNYGKEYKYSHDYEGNFVAQEFL 385
Query: 539 PPSLEGYKFLDWPKSNTTD 557
P ++ K + P +N +
Sbjct: 386 PDEIKNLKLYE-PGNNARE 403
>gi|365968219|ref|YP_004949781.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416076967|ref|ZP_11585734.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416089311|ref|ZP_11587898.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444337214|ref|ZP_21151224.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348004323|gb|EGY44838.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348009408|gb|EGY49561.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365747132|gb|AEW78037.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443547369|gb|ELT56878.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 446
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V + + SAVTSG+K++R+A++ A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NVEVERI--SAVTSGIKEIREAIDKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSAQEIEQVLQQAIDDPENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + + L +GDAR+ALN LE+ A + +G
Sbjct: 188 VRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAG--------------ESENGKILDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLLT-----EVLGERQARFDKQGDLFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT MK++G+G Y Y ++P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTSFMKDLGFGAEYRYAHNEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|399520417|ref|ZP_10761193.1| Replication-associated recombination protein A [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111858|emb|CCH37752.1| Replication-associated recombination protein A [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 441
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 261/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+H+L+P LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRATSLDEYVGQEHVLAPGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAK-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV SGVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 70 VTDAHFETISAVLSGVKEIRQAVEVAQQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ D K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVNRALTD-----PKGLGE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + +A + L + DGD R LN LE +A A DG V
Sbjct: 185 RHLRLPDEAFQILLAAADGDGRRLLNFLENAADLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG+ D A+YW ARML+GG
Sbjct: 228 ELLQNLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSSPDGALYWYARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALTLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E Q VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYTAFKAAMRDAAEQGSQE--VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKFLD 549
P SL+ ++ D
Sbjct: 399 FPESLQPRQYYD 410
>gi|21673587|ref|NP_661652.1| recombination factor protein RarA [Chlorobium tepidum TLS]
gi|21646700|gb|AAM71994.1| ATPase, AAA family [Chlorobium tepidum TLS]
Length = 451
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 265/423 (62%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +I+++ GQ+HL+ P +RS + R+PS+IFWGPPG+GKTTLA+ S+
Sbjct: 28 PLAERVRPRSIDELFGQEHLVGPGGPVRSYLEQGRIPSMIFWGPPGSGKTTLAEICARSL 87
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+Y+F LSA +GVKDVR +E A+K R ++ +LF+DE+HRFNK+QQD+ L IE
Sbjct: 88 --NYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIE 145
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF + LLSR +V LNPL +V +++RA++ +
Sbjct: 146 QGLIVLIGATTENPSFEVNRALLSRMQVYILNPLSEAEVRRVVERAIES-----DPQLAA 200
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE+ +EFL + GDAR ALNALE +A++ A R G +P V
Sbjct: 201 AGVEMRD--MEFLLAYAAGDARKALNALE-AALSLAPR----------------GTAPVV 241
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ ++A Q + YD+ GE HY+ +SA KSMRG+D DAA++W+A+M++GGE P
Sbjct: 242 --IDRTRLEQALQHRAPTYDKGGEAHYDTVSAFIKSMRGSDPDAALFWMAKMIDGGEDPK 299
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V FASED+G ADP AL AVS + A +G+PE + LAQ YLA PKS +
Sbjct: 300 FIARRMVIFASEDIGNADPYALTLAVSVFHAVELIGLPEARINLAQGATYLASCPKSNAS 359
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y + A +++ N PL+LRNAPT LMKEIGYGKGY Y P ++ + P
Sbjct: 360 YEGINEALSDVKKGAA-NAVPPLYLRNAPTDLMKEIGYGKGYRYPHSYPGHFVEEHYFPE 418
Query: 541 SLE 543
+E
Sbjct: 419 QME 421
>gi|341038416|gb|EGS23408.1| hypothetical protein CTHT_0000970 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 580
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/434 (45%), Positives = 269/434 (61%), Gaps = 34/434 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++D+ GQ+ L+ PN +LRS + ++R+PS+I WG GTGKTT+A+ I
Sbjct: 157 APLAERMRPESLDDIFGQE-LVGPNGVLRSLIETDRIPSMILWGSSGTGKTTIARCIARR 215
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+F+ L+A ++GV + + +A + ++T++F DE+HRF+K+QQD FL +
Sbjct: 216 SGA--RFIELNAASTGVAECKKLFAEAANELALTGRKTIIFCDEIHRFSKAQQDVFLRPV 273
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+IV IGATTENPSF + + LLSRCR TL PL D+ +++RA L + V
Sbjct: 274 EAGTIVLIGATTENPSFRVQSALLSRCRTFTLQPLSREDLIRIMERA-------LEQEVR 326
Query: 302 GTRVEV----NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T VE+ + D + +L + DGDAR ALN LE++ + E E E
Sbjct: 327 ETGVELSPLLDEDLLNYLAAFADGDARTALNLLELALSLT--------TRPGEPEGEP-- 376
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
+A +A K + YDRAG++HY+ ISA HKS+RGND DAA+Y+LARML+
Sbjct: 377 --------ITKEAIKASLTKTMIYDRAGDQHYDTISAFHKSIRGNDPDAALYYLARMLQS 428
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE PL+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C LALA
Sbjct: 429 GEDPLFIARRMVVIASEDVGLADNSMLPLATATYTATQQIGMPEARIPLAHCAVALALAK 488
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
KS YR L A ++E + VP+HLRNAPT+LM+E+GYGK Y Y P+ D KQ
Sbjct: 489 KSTRAYRGLNNALSALQEPGVASLPVPIHLRNAPTRLMREMGYGKEYKYPPNYKDGKVKQ 548
Query: 536 SFLPPSLEGYKFLD 549
+LPP L G KFL+
Sbjct: 549 DYLPPELLGRKFLE 562
>gi|254489705|ref|ZP_05102901.1| ATPase, AAA family protein [Methylophaga thiooxidans DMS010]
gi|224465114|gb|EEF81367.1| ATPase, AAA family protein [Methylophaga thiooxydans DMS010]
Length = 441
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 261/423 (61%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP ++ +GQ HLL + LR A+ S S+IFWGPPGTGKTTLAK I
Sbjct: 14 PLADRMRPKTLDQYIGQAHLLGASKPLRQAIASGHPHSMIFWGPPGTGKTTLAKLIAGYC 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ +SAV +GVK+VR AV A++L+ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 74 DA--EFMTISAVLAGVKEVRAAVARAQQLQQEQGRRTMLFVDEVHRFNKSQQDAFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+ FIGATTENPSF L LLSR RV L L+ D+ ++ RA+ + GL++
Sbjct: 132 DGTFTFIGATTENPSFELNNALLSRARVYVLKSLETTDLRQIIDRAMSNAELGLAER--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + L DGD R LN LEI+ + + + K + DE+
Sbjct: 189 -GIAIADELRDQLAQTADGDGRRVLNLLEIA-------IDLADSKGQAKVDET------- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
D E +D+ GE Y+ ISALHKS+RG+ DAA+YWL RML+GG P+
Sbjct: 234 ------DLAEVLSGTLRRFDKGGEAFYDQISALHKSVRGSSPDAALYWLCRMLDGGCDPV 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RR+VR A+ED+G ADP L A+ +++ LG PE + +AQ V YLA APKS ++
Sbjct: 288 YLMRRVVRMAAEDIGNADPRGLRIALDAWESFDKLGTPEGELAIAQAVVYLACAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + G E VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 348 YTAFKAAMHDAK-AHGSAE-VPVHLRNAPTKLMKELGYGREYRYAHDEPEAYAAGEEYFP 405
Query: 540 PSL 542
S+
Sbjct: 406 ESM 408
>gi|323486280|ref|ZP_08091606.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
WAL-14163]
gi|323693929|ref|ZP_08108116.1| replication-associated recombination protein A [Clostridium
symbiosum WAL-14673]
gi|323400390|gb|EGA92762.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
WAL-14163]
gi|323502026|gb|EGB17901.1| replication-associated recombination protein A [Clostridium
symbiosum WAL-14673]
Length = 440
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 273/440 (62%), Gaps = 31/440 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP +++VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I +
Sbjct: 16 APLASRLRPATLDEVVGQKHIIGKDKLLYRAIKADKLGSIIFYGPPGTGKTTLAKVIAGT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F L+A +G KD+ + V++A+ ++T+LFVDE+HRFNKSQQD LP +
Sbjct: 76 T--SARFKQLNATVAGKKDMEEVVQEAKDALGMYGQKTILFVDEIHRFNKSQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR R+ L PL DV LL+RAV D G+ G
Sbjct: 134 EDGTLLLIGATTENPYFEVNGALISRSRIFELKPLAKEDVAELLRRAVYDKEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +++ +A++FL GDAR ALNA+E+ +T E DG
Sbjct: 190 SYKADISEEAVDFLADMAGGDARAALNAVELGILTT--------------ERSEDG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TLD A+E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LARML GE
Sbjct: 232 LIHITLDVAQECIQKRAVRYDKGGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL+ AV+ A LGMPE ++L+Q V Y+A APKS +
Sbjct: 292 KFIARRIMICASEDVGNADPQALSVAVNAALAVERLGMPEARIVLSQAVTYVASAPKSNA 351
Query: 482 IYRALGAAQKVIR-ESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
A+ A+ +R ++V Q VP+HL++ K +++G G Y Y D P+ KQ +L
Sbjct: 352 ACMAIDEAESAVRSKAVAQ---VPVHLQDRHYKGAEKLGRGLDYKYAHDYPNHYVKQQYL 408
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P LEG F P N +K
Sbjct: 409 PDGLEGSSFY-RPSDNGYEK 427
>gi|430812909|emb|CCJ29700.1| unnamed protein product [Pneumocystis jirovecii]
Length = 521
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 277/479 (57%), Gaps = 38/479 (7%)
Query: 82 AAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDH 141
+ ++ + K + E + K++ ++V+S + PLSE++RP +D VGQ+
Sbjct: 73 SCSSLFKRKTEQNEFDLMKFSKKINNNNNVES-------YIPLSEKVRPQTFDDFVGQED 125
Query: 142 LLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDV 201
L+ + LLR + +++ PS I WG G GKTTLA+ I S + +F S ++ + ++
Sbjct: 126 LIGKHGLLRKLIENDKCPSFILWGTSGIGKTTLARII--SKITNKQFKEFSGASTHICNL 183
Query: 202 RDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLI 261
+ A ++A++ + ++T++FVDE+ +FNK QQ+ FLP IE G I IGATTENPSF +
Sbjct: 184 KKAFDEAKRTLSLTGRKTIIFVDEIQQFNKMQQNIFLPYIEKGIITLIGATTENPSFKIN 243
Query: 262 TPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG 321
LLSRC+V L L + +LK A+ + K + ++ + +E+L + DG
Sbjct: 244 NALLSRCKVFVLKKLSSTHIYKILKNAI-----SIIKQSSENIINIDDNILEYLANLSDG 298
Query: 322 DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAY 381
DAR+ALN LE+ +V ++V +T ++ K FQ Y
Sbjct: 299 DARIALNILEM---ILNSKVNDRDV------------------ITKENIKNIFQRTSFIY 337
Query: 382 DRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADP 441
DR G+ HY+ ISA HKS+RG+DA+AA+Y+L RML GGE PLYIARR+VR ASED+G +D
Sbjct: 338 DRIGDSHYDTISAFHKSIRGSDANAALYYLGRMLLGGEDPLYIARRMVRIASEDIGTSDN 397
Query: 442 LALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNE 501
AL A S YQA F+GMPE ++ LA YL+ A KSI IY AL + V++ G
Sbjct: 398 NALLLATSVYQAVQFVGMPEADIFLAHAAVYLSEAKKSIRIYSALNHVKDVLKTEEGAFS 457
Query: 502 G-VPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKFLDWPKSNTTD 557
+PLH+RN PT LM E+GYG GY Y P +D KQ +LP +L+ FLD + D
Sbjct: 458 AEIPLHIRNCPTTLMNELGYGVGYKYNPLYEDGKVKQEYLPATLKTRVFLDIDEKKIVD 516
>gi|399545160|ref|YP_006558468.1| replication-associated recombination protein A [Marinobacter sp.
BSs20148]
gi|399160492|gb|AFP31055.1| Replication-associated recombination protein A [Marinobacter sp.
BSs20148]
Length = 445
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 203/442 (45%), Positives = 271/442 (61%), Gaps = 33/442 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS A+ PL+ RMRP + D VGQ HL+ P LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFAISGGFRPLAARMRPTRLADYVGQPHLVGPGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N ++++ V SAV SGVKD+R AVE AR + S + T+LFVDEVHRFNK
Sbjct: 63 TTFAQLLANVSDLAFESV--SAVLSGVKDIRAAVERARARKQGSGQDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D++ LL RA
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEDDDIQRLLIRA--- 177
Query: 292 VNNGLSKSVG-GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
LS G G R+ V D + + S GDAR ALN LE++A A
Sbjct: 178 ----LSAEEGFGGRLRVAEDVLAMMASAASGDARRALNILEVAADLA------------- 220
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYW 410
E + DG V V+ D + Q +D+ G+ Y+ ISALHKS+RG+D D ++YW
Sbjct: 221 -EPDVDG----VDSVSEDQLELVMQTSLRRFDKGGDVFYDQISALHKSVRGSDPDGSLYW 275
Query: 411 LARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCV 470
+ RML+GG PLY+ARRLVR ASED+G ADP AL + + LG PE + LAQ V
Sbjct: 276 MCRMLDGGCDPLYVARRLVRIASEDIGNADPRALQLTLEAWDTQERLGSPEGELALAQAV 335
Query: 471 AYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD 530
YLA+APKS ++Y+A IR+ ++ VP+HLRNAPT+LMK +G+G+ Y Y D+
Sbjct: 336 IYLAMAPKSNAVYKAFNQCMADIRQD--KDFEVPVHLRNAPTQLMKSMGHGESYRYAHDE 393
Query: 531 P---SAKQSFLPPSLEGYKFLD 549
P +A + +LP ++ ++ +
Sbjct: 394 PDAFAAGEGYLPEAISKRRYYE 415
>gi|342879769|gb|EGU81005.1| hypothetical protein FOXB_08480 [Fusarium oxysporum Fo5176]
Length = 553
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 264/430 (61%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP N+++V GQD L+ PN +LRS + SN++PS+I WG GTGKTT+A+ I
Sbjct: 139 APLAERMRPRNLDEVCGQD-LVGPNGVLRSLIESNQVPSMILWGASGTGKTTIARCIAR- 196
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A ++GV + + ++A + ++T++F DE+HRFNK+QQD FL +
Sbjct: 197 -MVGSRFIELNATSTGVSECKKYFQEAMNDLALTGRKTIIFCDEIHRFNKAQQDVFLKPV 255
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + LLSRCR TL L DV +L+RA+ + +SV
Sbjct: 256 EAGTVTLIGATTENPSFKVANALLSRCRTFTLQSLTTEDVVRILQRAIKE-----EESVY 310
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + +L DGDAR ALN LE++ +G
Sbjct: 311 PQTPLLDEAMVTYLARFADGDARTALNLLELALSLTT----------------REG---- 350
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T +D K A K L YDRAG++HY+ ISA HKS+RGNDADAA+Y+LARML+ GE P
Sbjct: 351 ---ITQEDIKAAL-TKTLVYDRAGDQHYDTISAFHKSVRGNDADAALYYLARMLQSGEDP 406
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C L APKS
Sbjct: 407 LFIARRMVVIASEDVGLADNTLLPLATATYTATQQIGMPEARIPLAHCTVALCNAPKSTK 466
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YRAL A +RE VPLHLRNAPT+LM+++GYG Y Y P+ D KQ++LP
Sbjct: 467 AYRALNNAYAALREPGVAGLPVPLHLRNAPTRLMRDMGYGAEYKYPPNYRDGQVKQTYLP 526
Query: 540 PSLEGYKFLD 549
L G +F++
Sbjct: 527 DELVGRRFVE 536
>gi|406944211|gb|EKD76035.1| hypothetical protein ACD_43C00244G0002 [uncultured bacterium]
Length = 399
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 190/432 (43%), Positives = 262/432 (60%), Gaps = 52/432 (12%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++++RP ++ D +GQ L+ N ++R + S +L S+IFWG PGTGKTTLA I N+
Sbjct: 20 PLADKLRPTSLADFLGQAKLVGNNGVVRRLIESGKLTSLIFWGAPGTGKTTLAHIIANTT 79
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV +SAV +GVK++RD + A+ R+ ++T+LF+DE+HR+NK+QQD+ LP IE
Sbjct: 80 KA--KFVSISAVAAGVKELRDIITKAKSDRLLQRQQTILFIDEIHRWNKAQQDALLPYIE 137
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I IGATTENPSF L LLSRC+V+ L D+ LL+R
Sbjct: 138 DGTITLIGATTENPSFELNNALLSRCQVVVFEKLAEADIITLLQR--------------- 182
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T + ++++A+ + S DGD RVALN +E+ Q+ SD +
Sbjct: 183 TGIAMSNEALAMIVSFADGDGRVALNTVELL-----------------QKMYSD-----L 220
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +T + K A + L YD+ GEEHYN+ISALHK+MR +D +AA+YW RML GE PL
Sbjct: 221 SQLTKVEMKNALEKVALRYDKTGEEHYNIISALHKTMRASDVNAALYWCGRMLAAGEDPL 280
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RR+V FASED+G ADP L ++ YQA H LG+PE + Q VAY A A KS ++
Sbjct: 281 YVMRRVVEFASEDIGNADPQTLVLCMTAYQAVHALGIPEGQYAIFQAVAYCANAKKSRAV 340
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPPSL 542
Y A A + IR + N VPLHLRNAPTKLMK++GYGK + Q+ LP L
Sbjct: 341 YDAAQAVLEDIRTT--PNTAVPLHLRNAPTKLMKQLGYGK---------NTGQANLPNHL 389
Query: 543 EGYKFLDWPKSN 554
+ +PK N
Sbjct: 390 AQRVY--YPKQN 399
>gi|395009676|ref|ZP_10393174.1| AAA ATPase [Acidovorax sp. CF316]
gi|394312274|gb|EJE49459.1| AAA ATPase [Acidovorax sp. CF316]
Length = 447
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 258/431 (59%), Gaps = 40/431 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ +L P LR A S R S I WGPPG GKTT+A+ + +
Sbjct: 17 HQPLAERLRPRTLGEVIGQQQVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMAD 76
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+R+AVE A R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 77 --AFDAQFISISAVLGGVKDIREAVERAELARDGLMQQRTIVFVDEVHRFNKSQQDAFLP 134
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G FIGATTENPSF + + LLSR V L PL A D
Sbjct: 135 HVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLS----------AEDLQQLVALAQ 184
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G + DAI+ L + DGDAR LN LE A+ A QE ++
Sbjct: 185 QQGALPAIEQDAIDRLVAYADGDARRLLNTLETLAMAAT------------QEQLAEISD 232
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+GG
Sbjct: 233 AWLLKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGGA 284
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APKS
Sbjct: 285 DPRYMARRLVRMASEDIGLADPRALRLALDAAEVYERLGTPEGELALAECVVYLAVAPKS 344
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y+A AA+ +++ VP+HLRNAPTKLMK++ YGKGY Y D+ +A ++
Sbjct: 345 NAVYKAYNAARAWVKQD--GTRPVPMHLRNAPTKLMKQLDYGKGYRYAHDEEDGFAAGEN 402
Query: 537 FLPPSLE--GY 545
+LP ++ GY
Sbjct: 403 YLPQGMQAPGY 413
>gi|392420929|ref|YP_006457533.1| recombination factor protein RarA [Pseudomonas stutzeri CCUG 29243]
gi|390983117|gb|AFM33110.1| recombination factor protein RarA [Pseudomonas stutzeri CCUG 29243]
Length = 441
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 268/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ D K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALSD-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ ++ + L + DGD R LN LE ++ A +E S +
Sbjct: 185 LHLELPEESFQMLLAAADGDGRRLLNLLENASDLA---------------EEGGSISTDL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQDLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G+ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGIADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E+ Q VPLHLRNAPTKLMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAENGSQE--VPLHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
S+E ++
Sbjct: 401 ESMEPRRY 408
>gi|333379803|ref|ZP_08471522.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM
22836]
gi|332884949|gb|EGK05204.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM
22836]
Length = 422
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 267/438 (60%), Gaps = 37/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP N+ + +GQ HL+ ++LR + S R+PS + WGPPG GKTTLA+ I N++
Sbjct: 4 PLAERLRPRNLEEYIGQKHLVGEGAILRKMIESGRVPSFLLWGPPGVGKTTLAQIIANTL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA+ SGVKDVR+ +E A+K + + K +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 DTP--FYTLSAINSGVKDVREVIELAKKNQFFNTKSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF +I PLLSRC+V L L D+E L RA L++ +
Sbjct: 122 TGVITLIGATTENPSFEVIRPLLSRCQVYVLQSLGKEDLEELAHRA-------LTQDIIL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + GDAR LN L++ V + +D S
Sbjct: 175 KDRDIELKETDAILRFSGGDARKLLNILDL----------------VISSETNDKISITD 218
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LVT E Q AYD+ GE HY++ISA KS+RG+D DAAIYWLARM+ GGE P
Sbjct: 219 KLVT-----ERLQENPAAYDKGGEMHYDIISAFIKSIRGSDPDAAIYWLARMVAGGEDPK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C+ A H +G PE ++LA+ YLA +PKS S
Sbjct: 274 FIARRLVISAAEDIGLANPNALLLANACFDALHKIGWPEGRIVLAETTIYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y ++ A ++ E+ N VPLHLRNAPTKLMKE+ YGK Y Y + ++ +Q ++P
Sbjct: 334 YMSVDEAIALVNET--GNLPVPLHLRNAPTKLMKELNYGKEYKYAHSFENNFVQQDYVPK 391
Query: 541 SLEGYKFLDW-PKSNTTD 557
++G +F W P+ N +
Sbjct: 392 EIQGRQF--WKPQQNAAE 407
>gi|402087415|gb|EJT82313.1| AAA family ATPase [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 604
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/442 (44%), Positives = 274/442 (61%), Gaps = 21/442 (4%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++++V GQD L+ P+ +LRS + S R+PS+I WG GTGKTT+A+ I +
Sbjct: 156 APLAERMRPRSLDEVFGQD-LVGPSGVLRSLIDSGRVPSMIMWGGSGTGKTTIARCIAHK 214
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV L+A ++GV + + +A + +RT++F DE+HRFNK+QQD FL +
Sbjct: 215 VG--SRFVELNATSTGVNECKKLFAEAASELGLTGRRTIIFCDEIHRFNKAQQDVFLKPV 272
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCR TL+ L D++ +L+RA+++
Sbjct: 273 EAGTITLIGATTENPSFRVQAALLSRCRTFTLSKLTSEDIQRILRRALEEEQKVRDDGSA 332
Query: 302 GTRVE-----------VNHDAIEFLCSNCDGDARVALNALEIS-AITAAVRVPVKEVKEV 349
E ++ + + +L + DGDAR ALN LE++ ++T R+P K +
Sbjct: 333 DETAESAAPKSSLSPLMDEEMLAYLANFADGDARTALNLLELAMSLTVQPRMP-KNGEAA 391
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
+ +P +T DD K A K L YDRAG++HY+ ISA HKS+RG+DADAA+Y
Sbjct: 392 AAAAATGEAAP--TPLTKDDVKAAL-TKTLVYDRAGDQHYDSISAFHKSIRGSDADAALY 448
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
+LARML+ GE PLYIARRLV ASEDVGL D L A + Y A +G+PE + LA
Sbjct: 449 YLARMLQSGEDPLYIARRLVVVASEDVGLGDNTLLPLATAAYTAAQQIGLPEARIPLAHA 508
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
L LAPKS +YR L A +RE +PLHLRNAPT+LM+E+GYG Y Y P+
Sbjct: 509 TVALCLAPKSTRVYRGLNNAFAALREPGVAALPIPLHLRNAPTRLMREMGYGAEYKYNPN 568
Query: 530 --DPSAKQSFLPPSLEGYKFLD 549
D +Q +LP SL G +FL+
Sbjct: 569 YKDGRVRQDYLPDSLLGRRFLE 590
>gi|347738458|ref|ZP_08869961.1| ATPase, AAA family [Azospirillum amazonense Y2]
gi|346918489|gb|EGY00435.1| ATPase, AAA family [Azospirillum amazonense Y2]
Length = 440
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/427 (45%), Positives = 263/427 (61%), Gaps = 37/427 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++ VVGQ+HLL P + V ++RL S++ WGPPG GKTT+A+ + +
Sbjct: 16 PLADRLRPTALDQVVGQEHLLGPKGPIGRMVAAHRLSSMVLWGPPGCGKTTIARLLAQAT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ F LSAV SGV D+R E A++ R ++ + T+LF+DE+HRFN+SQQD FLP +E
Sbjct: 76 TLA--FEPLSAVFSGVADLRKVFEAAKQRR-QAGQGTLLFIDEIHRFNRSQQDGFLPYVE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ +GATTENPSF L LLSR +V LN L +E L+ RA ++ G
Sbjct: 133 DGTVTLVGATTENPSFELNAALLSRAQVFVLNRLGEEALEKLIGRA---------EAEEG 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + DA L + DGD R LN +E I A VR ED D + V
Sbjct: 184 RALPLTEDARAALKAMADGDGRYFLNLVE--EIYAVVR---------PGEDPLDTNALTV 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A+ Q + YD+A E HYNLISALHKS+RG+D DAA+YW +RML GGE P
Sbjct: 233 AV----------QRRMPLYDKAQEGHYNLISALHKSLRGSDTDAALYWYSRMLAGGEDPR 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFASED+G+ADP AL A++ + A LG PE + +AQCV YL APKS +
Sbjct: 283 YIARRLVRFASEDIGMADPQALTIALAAWDAYERLGSPEGELAIAQCVIYLGTAPKSNAA 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A+ AQ+ +E+ P+H+ NAPT+LMK++GYGKGY Y D D + Q++ P
Sbjct: 343 YMAIKQAQRAAKETGSLMP--PMHILNAPTRLMKDLGYGKGYNYDHDTADGFSGQNYFPD 400
Query: 541 SLEGYKF 547
+ +F
Sbjct: 401 GMARREF 407
>gi|343085874|ref|YP_004775169.1| ATPase AAA [Cyclobacterium marinum DSM 745]
gi|342354408|gb|AEL26938.1| AAA ATPase central domain protein [Cyclobacterium marinum DSM 745]
Length = 420
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 191/434 (44%), Positives = 266/434 (61%), Gaps = 45/434 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
PL+ERMRP ++ ++GQ+HL PN+ L A+ + +PS+I WGPPG GKTT+A I N
Sbjct: 3 QTPLAERMRPTTLDQLIGQEHLSGPNTFLHKAIKAGTVPSLILWGPPGVGKTTIANIIAN 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V F LSAV+SGVKD+R+ ++ A K VLF+DE+HRFNKSQQD+ L
Sbjct: 63 EVKAP--FYTLSAVSSGVKDIREVIQKA-----KYQLGVVLFIDEIHRFNKSQQDALLGA 115
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF + LLSRC++ TLNPL ++E ++ +A++ N+ + K
Sbjct: 116 VEKGVIRLIGATTENPSFEVNAALLSRCQIFTLNPLGREELEAMMIQALE--NDTVLKKK 173
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
E + L GD R LN LEI + ++ E+
Sbjct: 174 KVVLKETDA-----LLRISGGDGRKLLNLLEIV------------IDSIKSEE------- 209
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ + + Q K YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 210 --IIIENELVMQVAQQKVALYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGED 267
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARRL+ ASED+G A+P AL A +C+QA + +G PE +IL+QCV YLA +PKS
Sbjct: 268 VKFIARRLLILASEDIGNANPNALLLATNCFQAVNVIGYPESRIILSQCVTYLASSPKSN 327
Query: 481 SIYRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
+ Y A+ AQ ++++ EG VPLHLRNAPTKLMK++ YGK Y Y+ D + A Q
Sbjct: 328 ASYMAINTAQALVKQ-----EGDLPVPLHLRNAPTKLMKDLNYGKAYKYSHDYENNFAFQ 382
Query: 536 SFLPPSLEGYKFLD 549
FLP ++G K D
Sbjct: 383 EFLPDKIKGTKLYD 396
>gi|355625224|ref|ZP_09048121.1| hypothetical protein HMPREF1020_02200 [Clostridium sp. 7_3_54FAA]
gi|354821411|gb|EHF05798.1| hypothetical protein HMPREF1020_02200 [Clostridium sp. 7_3_54FAA]
Length = 440
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 273/440 (62%), Gaps = 31/440 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP +++VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I +
Sbjct: 16 APLASRLRPATLDEVVGQKHIIGKDKLLYRAIKADKLGSIIFYGPPGTGKTTLAKVIAGT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F L+A +G KD+ + V++A+ ++T+LFVDE+HRFNKSQQD LP +
Sbjct: 76 T--SARFKQLNATVAGKKDMEEVVQEAKDALGMYGQKTILFVDEIHRFNKSQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR R+ L PL DV LL+RAV D G+ G
Sbjct: 134 EDGTLLLIGATTENPYFEVNGALISRSRIFELKPLAKEDVAELLRRAVYDKEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +++ +A++FL GDAR ALNA+E+ +T E DG
Sbjct: 190 SYKADISGEAVDFLADMAGGDARAALNAVELGILTT--------------ERSEDG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TLD A+E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LARML GE
Sbjct: 232 LIHITLDVAQECIQKRAVRYDKGGDNHYDTISAFIKSMRGSDPDAAVYYLARMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL+ AV+ A LGMPE ++L+Q V Y+A APKS +
Sbjct: 292 KFIARRIMICASEDVGNADPQALSVAVNAALAVERLGMPEARIVLSQAVTYVASAPKSNA 351
Query: 482 IYRALGAAQKVIR-ESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
A+ A+ +R ++V Q VP+HL++ K +++G G Y Y D P+ KQ +L
Sbjct: 352 ACMAIDEAESAVRSKAVAQ---VPVHLQDRHYKGAEKLGRGLDYKYAHDYPNHYVKQQYL 408
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P LEG F P N +K
Sbjct: 409 PDGLEGSSFY-RPSDNGYEK 427
>gi|260948804|ref|XP_002618699.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720]
gi|238848571|gb|EEQ38035.1| hypothetical protein CLUG_02158 [Clavispora lusitaniae ATCC 42720]
Length = 768
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 187/436 (42%), Positives = 270/436 (61%), Gaps = 15/436 (3%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++D GQ+ L+ PN +LR+ + S ++PS I WG PG GKT+LA+ I ++
Sbjct: 223 PLAQRLRPKTLDDFFGQEKLVGPNGILRNIMASQQIPSFILWGVPGVGKTSLARIIASNS 282
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++++V LS S K +++A +A+ + S +T+LF+DE+HRFNK+ QD LPVIE
Sbjct: 283 --NHRYVELSGSESSAKKLKEAFSNAQNEQQLSGTKTILFLDEIHRFNKAVQDLLLPVIE 340
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF L LLSR + PL + +L + + VN G
Sbjct: 341 KGVVTVIGATTENPSFTLNNALLSRMHTFVMEPLSHEALVKILNKGLLLVNKTRKIVHGL 400
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAVR---VPVKEVKEVEQEDESDGC 358
+ +N +AI+ + GD+RVALN LE ++A + + P +E E E G
Sbjct: 401 HLIAMNKEAIDHIARLSTGDSRVALNILESVNAYLSGRKYNAFPDREEGETIDVPEKIG- 459
Query: 359 SPYVALVTLDDAKEAFQCK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
+ V L++ K + H YD+ GE HY+ ISA HKS+RG+DADAA+++L +ML
Sbjct: 460 ---IIKVDLENLKPLLATRNFHQMYDKVGENHYDTISAFHKSVRGSDADAAVFYLVKMLS 516
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GGE PL+IARR++ ASED+GL D L A+S +A F+GMPE +ILA C LA A
Sbjct: 517 GGEDPLFIARRMIVIASEDIGLRDSSCLPFAISAMEAVQFVGMPEGEIILAHCAVKLARA 576
Query: 477 PKSISIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSA 533
PKS YRAL AQ++++E + +PLH+RNAPTKLMKE+GYG+ Y Y P A
Sbjct: 577 PKSTKSYRALRTAQELLKEKPEVTKLPIPLHIRNAPTKLMKELGYGESYKYNPFFKHGIA 636
Query: 534 KQSFLPPSLEGYKFLD 549
KQ+F+PP ++ KF++
Sbjct: 637 KQTFMPPEIQDVKFVE 652
>gi|163752528|ref|ZP_02159714.1| ATPase, AAA family protein [Shewanella benthica KT99]
gi|161327583|gb|EDP98781.1| ATPase, AAA family protein [Shewanella benthica KT99]
Length = 443
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 277/439 (63%), Gaps = 34/439 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL LR A+ + R S++FWGPPGTGKTTLA+ + +
Sbjct: 14 PLAARMRPEVLEQFIGQSHLLGEGKPLRKALEAGRAHSMLFWGPPGTGKTTLAELVAHYA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++F+GATTENPSF + LLSR RV + L ++ ++++A+ D + GL K
Sbjct: 132 DGTVIFVGATTENPSFEINNALLSRARVYLIKRLTNDEIIQIVRQALIDNDRGLGKR--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++++ E L + CDGDAR ALN +E+ + A DG S +
Sbjct: 189 -QLKIPDAVAEKLANVCDGDARKALNLIELMSDMIA-----------------DGES-FT 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ ++ A + +D+ G++ Y+LISA+HKS+RG+ DAA+YW RMLEGG PL
Sbjct: 230 EQMIIEVAGQQLA----GFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+ ASED+G ADP+A+ A++ ++ H +G E LAQ + YLA APKS ++
Sbjct: 286 YIARRLLAIASEDIGNADPVAMTVALNAWECFHRVGPSEGERALAQAIVYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+++ RE+ GQ+ VP HLRNAPT+LM+++GYG+GY Y D+P+A S + P
Sbjct: 346 YTAFKAARQLARET-GQD-AVPEHLRNAPTQLMQDLGYGEGYRYAHDEPNAYASGENYFP 403
Query: 540 PSLEGYKFLDWPKSNTTDK 558
L +F +P + +K
Sbjct: 404 QRLAKSRFY-YPTEHGFEK 421
>gi|352085780|ref|ZP_08953371.1| AAA ATPase central domain protein [Rhodanobacter sp. 2APBS1]
gi|351681721|gb|EHA64845.1| AAA ATPase central domain protein [Rhodanobacter sp. 2APBS1]
Length = 451
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 263/430 (61%), Gaps = 35/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++++VGQ L+ P+ LR A+ + ++ S++ WGPPG GKTTLA +
Sbjct: 27 PLAERMRPRSLDEIVGQQRLVGPDKALRRALEAGKIHSMVLWGPPGCGKTTLALLVARYA 86
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ +SAV SG+ DVR A+ +A +L +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 87 DADFR--AISAVLSGLPDVRKALAEA-ELNFAQGRRTVLFVDEVHRFNKTQQDAFLPHIE 143
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+FIGATTENPSF L + LLSRCRV L P+ D+ LKRA+ D GL G
Sbjct: 144 RGVIIFIGATTENPSFELNSALLSRCRVHVLEPVSTDDIIAALKRALIDSERGL----GE 199
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++V+ +++E + DGD R AL LEI+A E+ E DE+ +
Sbjct: 200 LQLQVSDESLESIAQAADGDVRRALTLLEIAA----------ELAEDRSIDETT-----L 244
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ V D + +D+ GE+ Y+ ISALHKS+R +D DAA+YWL RML+GG PL
Sbjct: 245 SQVLADRTRR--------FDKQGEQFYDQISALHKSVRSSDPDAAVYWLCRMLDGGVDPL 296
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ R A EDVGLA+P A A+ + LG PE + LAQ +LA++PKS +
Sbjct: 297 YLARRMTRMAVEDVGLAEPRAWRMALDAWDTYERLGSPEGELGLAQLAIWLAISPKSNAA 356
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y A A+ +R G VP+HLRNAPTKLMK +GYGKGY Y D Q LP
Sbjct: 357 YMAYNKARDAVRS--GGTLEVPMHLRNAPTKLMKGLGYGKGYQYDHDAEGGIALDQQCLP 414
Query: 540 PSLEGYKFLD 549
+L G F +
Sbjct: 415 DALAGSIFYE 424
>gi|387121800|ref|YP_006287683.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415757637|ref|ZP_11481399.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416039453|ref|ZP_11574332.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416043463|ref|ZP_11574563.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416070634|ref|ZP_11583665.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429734888|ref|ZP_19268887.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans Y4]
gi|347994421|gb|EGY35706.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347997179|gb|EGY38206.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347998974|gb|EGY39858.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655394|gb|EGY70849.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876292|gb|AFI87851.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429150943|gb|EKX93833.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans Y4]
Length = 446
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIISHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSAQEIERVLQQAIDDPENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + + L +GDAR+ALN LE+ A + +G
Sbjct: 188 VRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAG--------------ESENGKILDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G +PL
Sbjct: 234 TLLT-----EVLGERQARFDKQGDLFYDFISALHKSIRGSAPDAALYWYARIITAGGEPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT MK++G+G Y Y ++P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTSFMKDLGFGAEYRYAHNEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|418293324|ref|ZP_12905234.1| recombination factor protein RarA [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
gi|379064717|gb|EHY77460.1| recombination factor protein RarA [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
Length = 441
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 268/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQDHLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRASSLDEYVGQDHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ D K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALSD-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ ++ + L + DGD R LN LE ++ A +E S +
Sbjct: 185 LHLELPEESFQMLLAAADGDGRRLLNLLENASDLA---------------EEGGSISTDL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQDLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGNADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + ES Q VPLHLRNAPTKLMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDVAESGSQE--VPLHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
+++ ++
Sbjct: 401 EAMQPRRY 408
>gi|261868432|ref|YP_003256354.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415768258|ref|ZP_11483597.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|444347236|ref|ZP_21155180.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261413764|gb|ACX83135.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348658212|gb|EGY75788.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443540748|gb|ELT51280.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 446
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V + + SAVTSG+K++R+A++ A++ ++ + RT+ FVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NVEVERI--SAVTSGIKEIREAIDKAKQNKL-AGLRTIFFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSAQEIEQVLQQAIDDPENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + + L +GDAR+ALN LE+ A + +G
Sbjct: 188 VRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAG--------------ESENGKILDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLLT-----EVLGERQARFDKQGDLFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT MK++G+G Y Y ++P +A +++ P
Sbjct: 349 YLAFKAAKKLATESADFD--VPEHLRNAPTSFMKDLGFGAEYRYAHNEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKDTQF 414
>gi|294141065|ref|YP_003557043.1| ATPase [Shewanella violacea DSS12]
gi|293327534|dbj|BAJ02265.1| ATPase, AAA family [Shewanella violacea DSS12]
Length = 443
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 271/428 (63%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL LR A+ + R S++FWGPPGTGKTTLA+ + +
Sbjct: 14 PLAARMRPEVLEQYIGQSHLLGEGKPLRKALEAGRAHSMVFWGPPGTGKTTLAELVAHYA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKEIRAAIEHAQNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ ++++A+ D GL K
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKRLTNDEIIQIVRQALIDDERGLGKR--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + E L + CDGDAR ALN +E+ + A DG S +
Sbjct: 189 -QLTIPDEVAEKLANVCDGDARKALNLIELMSDMIA-----------------DGES-FT 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ ++ A + +D+ G++ Y+LISA+HKS+RG+ DAA+YW RMLEGG PL
Sbjct: 230 EQMIIEVAGQQLA----GFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+ ASED+G ADP+A+ A++ ++ H +G E LAQ V YLA APKS ++
Sbjct: 286 YIARRLLAIASEDIGNADPVAMTVALNAWECFHRVGPSEGERALAQAVVYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+++ RE+ GQ+ VP HLRNAPT+LM+++GYG+GY Y D+P+A S + P
Sbjct: 346 YTAFKAARQLARET-GQDP-VPEHLRNAPTQLMQDLGYGEGYRYAHDEPNAYASGENYFP 403
Query: 540 PSLEGYKF 547
L +F
Sbjct: 404 ERLAQSRF 411
>gi|226323883|ref|ZP_03799401.1| hypothetical protein COPCOM_01658 [Coprococcus comes ATCC 27758]
gi|225207432|gb|EEG89786.1| ATPase, AAA family [Coprococcus comes ATCC 27758]
Length = 450
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 190/430 (44%), Positives = 266/430 (61%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP +++VVGQ H++ + LL A+ +++L S+IF+GPPGTGKTTLAK I N+
Sbjct: 27 SPLASRLRPTTLDEVVGQQHIIGKDKLLYRAIKADKLSSVIFYGPPGTGKTTLAKVIANT 86
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F ++A +G KD+ + V A++L+ KRT+LF+DE+HRFNK QQD LP +
Sbjct: 87 T--SAEFTQINATVAGKKDMEEVVNKAKELKGMYQKRTILFIDEIHRFNKGQQDYLLPFV 144
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + LLSR V L PL +VE L+ RAV D G+ G
Sbjct: 145 EDGTIILIGATTENPYFEVNGALLSRSSVFELRPLSQEEVETLILRAVQDEKKGM----G 200
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ DA+ FL GDAR ALNA+E+ +T P E DG
Sbjct: 201 SYHAVIEEDALHFLADLAGGDARSALNAVELGILT----TPRSE----------DG---- 242
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TL+ A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 243 MIHITLEVASECIQKRVVRYDKTGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDI 302
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+ALN AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 303 KFIARRIMICASEDVGNADPMALNVAVSAAQAVERIGMPEAQIILSQAVLYVATAPKSNS 362
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA +++ VP+HL++A + ++G+G GY Y D P+ KQ +LP
Sbjct: 363 ACNAVFAAMDNVKK---YKTTVPVHLQDAHYRGSAKLGHGIGYKYAHDYPNHYVKQQYLP 419
Query: 540 PSLEGYKFLD 549
++ F +
Sbjct: 420 DEIKDAVFYE 429
>gi|296133419|ref|YP_003640666.1| ATPase AAA [Thermincola potens JR]
gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR]
Length = 445
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 189/432 (43%), Positives = 272/432 (62%), Gaps = 37/432 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++ VGQ+ ++ P LLR A+ +++L S+IF+GPPGTGKTTLAK I N+
Sbjct: 16 APLAVRMRPRTLDEFVGQEQIVGPGKLLRRAIEADQLSSVIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
FV ++AVTSGV ++R+ +++A++ +RT+LF+DE+HRFNKSQQD+ LP +
Sbjct: 76 TKAF--FVQVNAVTSGVAELREVIQNAKERLGMYGQRTILFIDEIHRFNKSQQDALLPYV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + PL SR R+ L D+ LL RA+ D GL G
Sbjct: 134 EDGTIILIGATTENPYFEVNAPLRSRSRIFKFESLSNDDIRKLLWRALQDKEAGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+V++ +A+E L GDAR ALNALE++ +T A DE
Sbjct: 190 NYKVDLTEEALEHLVDISSGDARTALNALELAVLTTA-------------PDEKG----- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V +TL+ A+E+ Q + + YD++G+ HY++ISA KS+RG+D DAA+YW ARM GE
Sbjct: 232 VRKITLEVAEESIQKRAVLYDKSGDYHYDVISAFIKSIRGSDPDAALYWYARMTHAGEDQ 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+I RRL+ ASED+G+ADP A+ A + + A +GMPE + +AQC+ YLA APKS S
Sbjct: 292 RFIVRRLIVHASEDIGMADPQAMLMAHAAWNALETVGMPEARIPIAQCIIYLATAPKSNS 351
Query: 482 IY----RALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
+ +AL A+K E G+ VP HLR+ K +E+G+ KGY+Y D P Q
Sbjct: 352 VICAVDKALADAEK---ERAGE---VPPHLRDTHYKGARELGH-KGYLYPHDYPGHYVDQ 404
Query: 536 SFLPPSLEGYKF 547
++P +L G ++
Sbjct: 405 QYMPDNLVGRQY 416
>gi|261199858|ref|XP_002626330.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081]
gi|239594538|gb|EEQ77119.1| AAA family ATPase [Ajellomyces dermatitidis SLH14081]
Length = 543
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 258/430 (60%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQ+ L+ P+ +LR + +R+PS+I WG GTGKTT+A+ I
Sbjct: 128 APLAERMRPQTLDDVCGQE-LVGPSGVLRGLIEQDRVPSMILWGGAGTGKTTIARVIAK- 185
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV +++ SG+ + + +A+ S K+T+LF DE+HRF+KSQQD FL +
Sbjct: 186 -MVGSRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPV 244
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I FIGATTENPS + LLSRCR TL L ++ +L RA++ + S S
Sbjct: 245 ESGQITFIGATTENPSSRIQNALLSRCRTFTLAKLTVENIVSILNRALEVEGSNYSPSP- 303
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+ + I++L + DGDAR +LN LE++ + KE
Sbjct: 304 ----LVDDELIKYLAAFADGDARTSLNLLELTMDLSRREGMTKE---------------- 343
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
D K++ K L YDR G++HY+ ISA HKS+RGND DAA+Y+LARM++ GE P
Sbjct: 344 -------DLKKSL-TKTLVYDRVGDQHYDTISAFHKSIRGNDPDAALYYLARMIQSGEDP 395
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+ ASED+GLAD L A S Y A +GMPE + LAQ LAL+ KS
Sbjct: 396 LYIARRLIVVASEDIGLADNTMLTLATSAYTAVEKIGMPEARINLAQATVALALSKKSTR 455
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR LG A V+ E +P+HLRNAPTKLMKE+GYGK Y Y P+ D Q +LP
Sbjct: 456 AYRGLGNALAVLEEPGMAGLPIPIHLRNAPTKLMKEMGYGKEYKYNPNYVDGKVAQVYLP 515
Query: 540 PSLEGYKFLD 549
L G KFL+
Sbjct: 516 EKLLGKKFLE 525
>gi|293603799|ref|ZP_06686215.1| replication-associated recombination protein A [Achromobacter
piechaudii ATCC 43553]
gi|292817797|gb|EFF76862.1| replication-associated recombination protein A [Achromobacter
piechaudii ATCC 43553]
Length = 446
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 270/439 (61%), Gaps = 33/439 (7%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ + H P+ PL+ER+RP +++DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 3 NDLFAADPAHRPYVPLAERLRPRSLSDVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPG 62
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + +F+ +SAV GVKD+R+AV A ++ +RT+LFVDEVHR
Sbjct: 63 VGKTTLARLMADGFDA--QFIAISAVLGGVKDIREAVTVA-QVAQGQGRRTILFVDEVHR 119
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L +++ L+ RA
Sbjct: 120 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSTEELQQLVDRA 179
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V +N G+ + G + + DA E L + DGDAR ++A+E+ V E +
Sbjct: 180 VHALNEGMDE---GEAIRIEPDAREQLAAWADGDARRLISAVEV----------VAESAQ 226
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
D D ++L ++L +D+ G+ Y+ ISALHKS+RG++ DAA
Sbjct: 227 SAGRDTVDAAWLEISL-----------SQNLRRFDKGGDAFYDQISALHKSVRGSNPDAA 275
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW RM++GG P Y++RRLVR A ED+GLADP A + AV+ LG PE + LA
Sbjct: 276 LYWFCRMIDGGADPKYLSRRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALA 335
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V Y+A A KS ++Y A A++ E + VP+HLRNAPTKLMK++G+GK Y Y
Sbjct: 336 QAVVYMACAAKSNAVYNAYNQARQFAAEH--GSAPVPIHLRNAPTKLMKQLGHGKAYRYA 393
Query: 528 PDDP---SAKQSFLPPSLE 543
D+P +A + + P L+
Sbjct: 394 HDEPHGYAAGEQYFPDGLK 412
>gi|367055858|ref|XP_003658307.1| hypothetical protein THITE_2124869 [Thielavia terrestris NRRL 8126]
gi|347005573|gb|AEO71971.1| hypothetical protein THITE_2124869 [Thielavia terrestris NRRL 8126]
Length = 594
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 201/456 (44%), Positives = 273/456 (59%), Gaps = 35/456 (7%)
Query: 96 IEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS 155
+E PL KR K + APL+ERMRP ++DV GQD L+ PN +LRS + S
Sbjct: 150 LEGMPLTKRSK-----------NARTAPLAERMRPDTLDDVFGQD-LVGPNGVLRSLIES 197
Query: 156 NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKS 215
+RLPS+I WG GTGKTT+A+ I V +F+ L+A ++GV + + +A +
Sbjct: 198 DRLPSMILWGGSGTGKTTIARCIARRVG--SRFIELNATSTGVAECKKLFVEAANELALT 255
Query: 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNP 275
+RT++F DE+HRF+K+QQD FL +E G+I IGATTENPSF + PLLSRCR TL P
Sbjct: 256 GRRTIIFCDEIHRFSKAQQDVFLKPVEAGTITLIGATTENPSFRVQAPLLSRCRTFTLQP 315
Query: 276 LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335
L D++ +L RA+ V ++ + I++L + DGDAR ALN LE++
Sbjct: 316 LTEQDIQRILVRALQQETEAEGVPVSPL---IDQELIQYLSAFADGDARTALNLLELALS 372
Query: 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISAL 395
+ SP +T + K A K L YDRAG++HY+ ISA
Sbjct: 373 LT---------------NRPPSSSPSEPPLTKEAIKAAL-TKTLVYDRAGDQHYDTISAF 416
Query: 396 HKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACH 455
HKS+RG+DADAA+Y+LARML+ GE PL+IARR+V ASEDVGLAD L A + Y A
Sbjct: 417 HKSVRGSDADAALYYLARMLQSGEDPLFIARRMVVIASEDVGLADSSLLPLATATYTATQ 476
Query: 456 FLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLM 515
+GMPE + LA C L LAPKS YR L A ++E + VP+HLRNAPT+LM
Sbjct: 477 QIGMPEARIPLAHCAVALCLAPKSTRAYRGLNNALAALQEPGVASLPVPVHLRNAPTRLM 536
Query: 516 KEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
+++GYGK Y Y P+ + +Q +LP L G +FL+
Sbjct: 537 RDLGYGKEYKYPPNYLNGRVRQDYLPEQLLGRRFLE 572
>gi|282858602|ref|ZP_06267764.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
gi|424898944|ref|ZP_18322492.1| AAA ATPase [Prevotella bivia DSM 20514]
gi|282588606|gb|EFB93749.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
gi|388593654|gb|EIM33891.1| AAA ATPase [Prevotella bivia DSM 20514]
Length = 423
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/427 (45%), Positives = 262/427 (61%), Gaps = 33/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ +GQ+HL+ +++LR + S + S I WGPPG GKTTLA+ I + +
Sbjct: 3 PLAERMRPRTLDQYIGQEHLVGKDAVLRRMIESGHISSFILWGPPGVGKTTLAQIIAHKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIEKAKSNRFFSANSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+ ++ +
Sbjct: 121 KGIVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEQKDLLALLQRAI-------TEDIEL 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++++ + L GDAR LN L++ V E E+ D +D
Sbjct: 174 KKLKIKLTETKALLRYSGGDARKLLNILDLI---------VSATLEEEKVDITDNL---- 220
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+E Q LAYD+ GE HY++ISA KS+RG+D DAAIYW+ARM+EGGE P
Sbjct: 221 -------VEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAAIYWMARMIEGGEDPQ 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 274 FIARRLVISASEDIGLANPNALLIANAAFDAVMKIGWPEGRIPLAEAAIYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +R+S N+ VPL LRNAPTKLMKE+GY GYIY D P+ Q +LP
Sbjct: 334 YLAIDKALAEVRQS--GNQLVPLPLRNAPTKLMKELGYHDGYIYPHDYPNNFVPQQYLPD 391
Query: 541 SLEGYKF 547
+L +F
Sbjct: 392 TLTEKRF 398
>gi|313202726|ref|YP_004041383.1| recombination protein mgsa [Paludibacter propionicigenes WB4]
gi|312442042|gb|ADQ78398.1| Recombination protein MgsA [Paludibacter propionicigenes WB4]
Length = 421
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 196/422 (46%), Positives = 257/422 (60%), Gaps = 34/422 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ N++LR + S + S I WGPPG GKTTLAK I N +
Sbjct: 3 PLAERLRPQTLDNYIGQKHLVGENAILRKMIESGHVASFILWGPPGVGKTTLAKIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 --DRPFYTLSAVTSGVKDVREVIEKAKANRFFSQANPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +ITPLLSRC+V L L+ D+ L RA+ + +
Sbjct: 121 NGTVTLIGATTENPSFEVITPLLSRCQVYVLKSLEKEDLLELAGRAI-------TTDIEL 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
E+ + E L GDAR LN LE+ V +ES
Sbjct: 174 KNREIVLEETESLLRFSGGDARKLLNILEL----------------VVNAEESGKV---- 213
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ T + E Q AYD+ GE HY++ISA KS+RG+D DAA+YWLARM+ GGE P
Sbjct: 214 -IFTNETVTERLQQNPSAYDKDGEMHYDIISAFIKSIRGSDPDAAVYWLARMVAGGEDPK 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C+ A +G PE +ILA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLIANACFDALQKIGWPEGRIILAEATVYLASSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A ++ E G N VPLHLRN+PTKLMKE+ YGK Y Y+ D P+ +Q FLP
Sbjct: 333 YLAIDDALALV-ERTG-NLPVPLHLRNSPTKLMKELNYGKAYKYSHDFPNHFVEQQFLPD 390
Query: 541 SL 542
L
Sbjct: 391 EL 392
>gi|329889161|ref|ZP_08267504.1| ATPase family associated with various cellular activities AAA
family protein [Brevundimonas diminuta ATCC 11568]
gi|328844462|gb|EGF94026.1| ATPase family associated with various cellular activities AAA
family protein [Brevundimonas diminuta ATCC 11568]
Length = 434
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/440 (44%), Positives = 270/440 (61%), Gaps = 39/440 (8%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
D+ + +H P APL++R+RP ++ VVGQDHLL +R + + RL S+I WGPPGT
Sbjct: 3 DLFEASGIHPPDAPLADRLRPQALDQVVGQDHLLGEGGPIRRMIEAGRLGSMILWGPPGT 62
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTT+A+ + A Y++ +SAV SGV D++ A E AR +R + ++T+LFVDE+HRF
Sbjct: 63 GKTTIARLLAK--AAGYEYQSISAVFSGVADLKKAFEAAR-MRRAAGQQTLLFVDEIHRF 119
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
N++QQD FLP +E+G + +GATTENPSF L LLSR +V L L +++LL RA
Sbjct: 120 NRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRSQVYVLKRLDDASLDLLLDRA- 178
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
+++ G + + +A + + + DGD R L E+ + ++ +V
Sbjct: 179 --------EALMGKLLPLTPEARQAMLALADGDGRYLLTMSEV----------LFDLTDV 220
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
E D AL + Q + AYD++ EEHYNLISALHKS+RG+D DAA+Y
Sbjct: 221 EPLDVQ-------ALAGV------LQKRAPAYDKSREEHYNLISALHKSVRGSDPDAALY 267
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WLARML GGE PLY+ARR+VR A ED+G ADPL++ A + FLG PE + LAQ
Sbjct: 268 WLARMLNGGEDPLYLARRIVRMAVEDIGQADPLSILVANAAKDTYDFLGSPEGELALAQA 327
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
V +LA APKS+ +Y A AA++ E+ P H+RNAPTKLMK++GYGKGY Y PD
Sbjct: 328 VVHLATAPKSVGVYEAFKAAKRAAHETGSLMP--PAHIRNAPTKLMKQLGYGKGYQYDPD 385
Query: 530 DPS--AKQSFLPPSLEGYKF 547
P + +F P +E F
Sbjct: 386 TPEGFSGANFFPDEMERRTF 405
>gi|167758834|ref|ZP_02430961.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
gi|336421809|ref|ZP_08601964.1| hypothetical protein HMPREF0993_01341 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663574|gb|EDS07704.1| ATPase, AAA family [Clostridium scindens ATCC 35704]
gi|336009658|gb|EGN39649.1| hypothetical protein HMPREF0993_01341 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 438
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 262/430 (60%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP + +VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I N+
Sbjct: 16 APLASRLRPSTLEEVVGQQHIIGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F ++A +G KD+ + V A++ K+T+LFVDE+HRFNKSQQD LP +
Sbjct: 76 TSAV--FTQINATVAGKKDMEEVVGRAKETLGMYQKKTILFVDEIHRFNKSQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR + L+PL D++ +++RAV DV G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNGALISRSSIFELHPLDKEDIKTVIRRAVYDVEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ DA+EFL GDAR ALNA+E+ +T E DG
Sbjct: 190 SYDAVIEEDALEFLADISGGDARNALNAVELGILTT--------------ERSDDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 235 ---ITLPVASECIQKRVVRYDKTGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AVS QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICASEDVGNADPMALTVAVSAAQAVERIGMPEAQIILSQAVLYVATAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ A + ++ Q VP HL++A K K +G+G GY Y D P KQ +LP
Sbjct: 352 ATNAIFGAMENVK---SQKTSVPAHLQDAHYKGSKNLGHGIGYKYAHDYPHHYVKQQYLP 408
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 409 EEIKDARFYE 418
>gi|347539139|ref|YP_004846564.1| AAA ATPase [Pseudogulbenkiania sp. NH8B]
gi|345642317|dbj|BAK76150.1| AAA ATPase central domain protein [Pseudogulbenkiania sp. NH8B]
Length = 439
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 191/433 (44%), Positives = 261/433 (60%), Gaps = 35/433 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+E +RP ++++V+GQ HL+ P LR AV S S+I WGPPG GKTTLA+ +
Sbjct: 9 PKKPLAEALRPTSLDEVIGQPHLIGPGKPLRLAVESKTPHSMILWGPPGVGKTTLARILA 68
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+S +F+ LSAV SGVKD+R+AV+ A+ + + + T+LFVDEVHRFNKSQQD+FLP
Sbjct: 69 HSFDA--EFIPLSAVFSGVKDIREAVDRAQAVLQRDGRHTILFVDEVHRFNKSQQDAFLP 126
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + FIGATTENPSF + + LLSR +V LN L D + L RAV S +
Sbjct: 127 YVESGLLTFIGATTENPSFEVNSALLSRAQVYVLNALTDDDFKALFARAV------ASGA 180
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ G + ++ A+ L DGDAR LN LE + A R
Sbjct: 181 LPG--LTFDNSALATLSGYADGDARRFLNLLEQTRTAAGAR------------------- 219
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+V + D E +D+ G+ Y+ ISALHKS+RG++ D A+YWL RML+GG
Sbjct: 220 -HVEHIDADFLAEVLTVNARRFDKGGDAFYDQISALHKSVRGSNPDGALYWLTRMLDGGA 278
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR A ED+GLADP A A+ LG PE + LAQ YLA+APKS
Sbjct: 279 DPRYLARRLVRMAWEDIGLADPRAARIALDAADTYERLGSPEGELALAQAAIYLAVAPKS 338
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
+ Y+A A+ IR+ + + VP+HLRNAPT+LMKE+GYG Y Y D+P +A ++
Sbjct: 339 NAGYKAYNEARAFIRQDISRP--VPVHLRNAPTRLMKELGYGHAYRYAHDEPHAYAAGET 396
Query: 537 FLPPSLEGYKFLD 549
+LP +E ++ +
Sbjct: 397 YLPEGIEDSRWYE 409
>gi|319902448|ref|YP_004162176.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108]
gi|319417479|gb|ADV44590.1| Recombination protein MgsA [Bacteroides helcogenes P 36-108]
Length = 422
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 200/439 (45%), Positives = 265/439 (60%), Gaps = 35/439 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP + + +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N
Sbjct: 2 APLAERLRPKTLEEYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANK 61
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAVTSGVKDVRD +E A+ R S +LF+DE+HRF+KSQQDS L +
Sbjct: 62 LDTP--FYTLSAVTSGVKDVRDVIERAKGNRFFSQASPILFIDEIHRFSKSQQDSLLGAV 119
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RAV +
Sbjct: 120 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQRAVTT-----DAVLR 174
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++E+ S GDAR LN LE+ ES+ P
Sbjct: 175 ERKIELKETTAMLRFSG--GDARKLLNILELVV-------------------ESEADDPV 213
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V +T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 214 V--ITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDP 271
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRLV ASED+GLA+P A A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 272 AFIARRLVISASEDIGLANPNAQLIANACFDTLMKVGWPEGRIPLAEATIYLATSPKSNS 331
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ A +++RE+ N VPLHLRNAPTKLMK++GYG Y Y D P KQ FLP
Sbjct: 332 AYMAINQALELVRET--GNLPVPLHLRNAPTKLMKQLGYGDNYKYAHDYPGNFVKQQFLP 389
Query: 540 PSLEGYKFLDWPKSNTTDK 558
L+ + + P++N ++
Sbjct: 390 DELKNRRIWE-PQANAAEQ 407
>gi|354603485|ref|ZP_09021483.1| hypothetical protein HMPREF9450_00398 [Alistipes indistinctus YIT
12060]
gi|353348865|gb|EHB93132.1| hypothetical protein HMPREF9450_00398 [Alistipes indistinctus YIT
12060]
Length = 424
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 195/437 (44%), Positives = 266/437 (60%), Gaps = 41/437 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ+HL+ P + R + + +PS I WGPPG GKTTLAK + +
Sbjct: 6 PLAERLRPRTLDEYIGQEHLVGPQGVFRKFIETGNVPSFILWGPPGVGKTTLAKLV--AT 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A+ K LSAVTSGVK+VR+ +E ARK + + LF+DE+HRFNKSQQDS L +E
Sbjct: 64 ALERKLFTLSAVTSGVKEVREVIEQARKSQFFNTPSPFLFIDEIHRFNKSQQDSLLGAVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I+PLLSRC+V L ++ D+++LL+RAV + + G
Sbjct: 124 QGVVTLIGATTENPSFEVISPLLSRCQVYVLKAMEEADLQLLLERAV--TTDPTLRERGV 181
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEI--SAITAAVRVPVKEVKEVEQEDESDGCSP 360
VE E L GDAR LN L+I +A + + K V + Q++
Sbjct: 182 EVVET-----EALFRFSGGDARKLLNILDILSNATDGKIIISDKNVTDCLQQN------- 229
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+AL YD+ GE+HY++ISA KS+RG+D +AAIY+LARML GGE
Sbjct: 230 -IAL----------------YDKNGEQHYDVISAFIKSVRGSDPNAAIYYLARMLAGGED 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRLV A+ED+GLA+P L A +C+ H +GMPE + LA+ YLA +PKS
Sbjct: 273 PKFIARRLVILAAEDIGLANPNGLLLANACFDTVHKIGMPEARIPLAEATIYLATSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y A+ AA ++ + VPLH+RNAPTKLMK +GYG Y Y D A+Q F+
Sbjct: 333 SAYMAINAALGMVNHDT-TDRPVPLHIRNAPTKLMKNLGYGDNYKYAHDFEGNFAEQEFM 391
Query: 539 PPSLEGYKFL---DWPK 552
P L G++F D PK
Sbjct: 392 PEGLVGHRFYQPADNPK 408
>gi|326336426|ref|ZP_08202596.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691299|gb|EGD33268.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 428
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 191/439 (43%), Positives = 265/439 (60%), Gaps = 39/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRPV ++D + Q HL+ LR + PS+IFWGPPGTGKTTLA I
Sbjct: 6 PLAERMRPVRLSDYISQSHLVGEGGALRMQIEKGITPSLIFWGPPGTGKTTLAYIIAKEG 65
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSA++SG+K+VRD +E +++ + + + K ++F+DE+HRFNK+QQDS L +
Sbjct: 66 QRT--FFSLSAISSGIKEVRDIIEKSKREQGLFTPKNPIIFIDEIHRFNKTQQDSLLEAV 123
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV-DDVNNGLSKSV 300
E G + IGATTENPSF +I LLSRC+V TL+P D+ LL RA+ +D+ K
Sbjct: 124 ERGWVTLIGATTENPSFEVIPALLSRCQVYTLHPFTKEDLLALLHRAILEDIQLKNRK-- 181
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+N E L DGD R LN E+ T + E +E+
Sbjct: 182 ------INLKETEALLRLSDGDGRKLLNTFELIVNTFS------EGEEI----------- 218
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+T + + Q + YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 219 ---LITNEKVLQIVQQNTVLYDKVGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGED 275
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARR++ ASED+G A+P+AL A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 276 VKFIARRMLILASEDIGNANPMALVMANNTFQAVTVIGYPESRIILSQCAIYLASSPKSN 335
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y+A+ AQ+ +++ N VPLHLRNAPT LMKE+ YGK Y Y D P Q F+
Sbjct: 336 ASYKAINMAQQWVKQQ--GNLSVPLHLRNAPTTLMKELSYGKDYQYAHDYPHNFVFQDFM 393
Query: 539 PPSLEGYKFL---DWPKSN 554
P L+G + D PK N
Sbjct: 394 PEELQGKRLYEPGDNPKEN 412
>gi|390444790|ref|ZP_10232561.1| ATPase AAA [Nitritalea halalkaliphila LW7]
gi|389663875|gb|EIM75387.1| ATPase AAA [Nitritalea halalkaliphila LW7]
Length = 423
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 270/445 (60%), Gaps = 48/445 (10%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ER+RP + +++GQ+HL P++ LR A+ S ++PS++ WGPPG GKTTLA I
Sbjct: 5 PDAPLAERLRPSRLEEIIGQEHLTGPDAFLRRAIRSAQVPSLLLWGPPGVGKTTLANVIA 64
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ V + F LSA++SGVKD+R+ + A K + +LF+DE+HRFNK QQD+ L
Sbjct: 65 HEVKLP--FYTLSAISSGVKDIREVIAKA-----KFQQGVILFIDEIHRFNKGQQDALLA 117
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF + LLSRC+VLTL L D+E +L +A++ S+
Sbjct: 118 AVEKGQVRLIGATTENPSFQINAALLSRCQVLTLKALAVKDLEKMLLQALERDPYIRSR- 176
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV----KEVKEVEQEDES 355
+V D E L GD R LN E+ + A+ P +V EV Q
Sbjct: 177 ------QVQLDETEALFRLSGGDGRKLLNLFEL-VVQASAETPCVLKNAQVMEVAQR--- 226
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+V+L YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+
Sbjct: 227 -----HVSL----------------YDKDGEQHYDIISAFIKSIRGSDPNAALYWLARMI 265
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGE +IARRLV ASED+G A+P AL A+SC A +G PE + LAQCV YLA
Sbjct: 266 EGGEDVTFIARRLVILASEDIGNANPNALLLAMSCMDAVRVIGFPEARIPLAQCVTYLAS 325
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSA 533
+PKS + Y + AQ+++RE+ + VPLHLRNAPT+LM+++ YG GY Y D D +
Sbjct: 326 SPKSNAAYVGINQAQQLVRET--GDLPVPLHLRNAPTRLMQDLNYGAGYTYAHDFKDNFS 383
Query: 534 KQSFLPPSLEGYKFLDWPKSNTTDK 558
+Q FLP +L G K L P N ++
Sbjct: 384 EQEFLPEALSG-KVLYTPGENAREQ 407
>gi|383759263|ref|YP_005438248.1| recombination factor protein RarA [Rubrivivax gelatinosus IL144]
gi|381379932|dbj|BAL96749.1| recombination factor protein RarA [Rubrivivax gelatinosus IL144]
Length = 447
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 200/429 (46%), Positives = 258/429 (60%), Gaps = 44/429 (10%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183
L+ER+RP + +V+GQ HLL P LR A S R+PS+I WGPPG GKTTLA+ + SV
Sbjct: 28 LAERLRPHTLAEVIGQQHLLGPGRPLRVAFESGRIPSMILWGPPGVGKTTLARLVAGSV- 86
Query: 184 VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED 243
+F+ LSAV +GVKD+RDAVE A+ R + + TV+FVDEVHRFNK+QQD+FLP +E
Sbjct: 87 -DAQFLVLSAVLAGVKDIRDAVELAKDAR-RRGQGTVVFVDEVHRFNKAQQDAFLPHVES 144
Query: 244 GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGT 303
G FIGATTENPSF + + LLSR V L PL D+ LL RA + T
Sbjct: 145 GLFTFIGATTENPSFEVNSALLSRATVHVLKPLADEDLGTLLDRARTLLAAPPLTEAART 204
Query: 304 RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363
R L ++ DGDAR LNA + TA +V E
Sbjct: 205 R----------LVAHADGDARRLLNAYDNLVATAG------DVAE--------------- 233
Query: 364 LVTLDDAKEAFQCKHL--AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
LDDA L YD+ G++ Y+ ISALHKS+RG+D D AIYWLAR+L+GG P
Sbjct: 234 ---LDDAALERALGELLRRYDKGGDQFYDTISALHKSVRGSDPDGAIYWLARLLDGGADP 290
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
Y ARR+VR A+EDVGLADP AL A+ + LG PE + LA+ V YLA+APKS +
Sbjct: 291 RYAARRIVRMAAEDVGLADPRALRLALDAAEVYERLGSPEGELALAEAVVYLAIAPKSNA 350
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y+A + ++R V + VP HLRNAPTKLMK +G+G+ Y Y D+P +A + +L
Sbjct: 351 VYKAWNEVRALVRSDVSRP--VPDHLRNAPTKLMKSLGHGRDYRYAHDEPEGYAAGERYL 408
Query: 539 PPSLEGYKF 547
P L G +F
Sbjct: 409 PDGLVGRRF 417
>gi|414341388|ref|YP_006982909.1| recombination factor protein RarA [Gluconobacter oxydans H24]
gi|411026723|gb|AFV99977.1| recombination factor protein RarA [Gluconobacter oxydans H24]
Length = 470
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 254/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + DV GQDHLL P L + L S+I WG PG GKTT+A+ +
Sbjct: 52 PLADRLRPKTLEDVRGQDHLLGPEGTLTRMLARGTLSSLILWGGPGCGKTTIARLLAGKA 111
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ Y + SAV SGV ++R A ++A K + + + T+LFVDE+HRFN++QQD FLP +E
Sbjct: 112 NLFYSQI--SAVFSGVAELRKAFDEADKKQEATGRGTLLFVDEIHRFNRAQQDGFLPYVE 169
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++V +GATTENPSF L LLSRC+VL LN L +E LL+RA ++V G
Sbjct: 170 RGTVVLVGATTENPSFALNAALLSRCQVLVLNRLDDASLEALLRRAEEEV---------G 220
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ ++ +A L + DGD R LN +E + P
Sbjct: 221 HRLPLDREARASLRAMADGDGRYLLNMVEQLVV----------------------LDPNR 258
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ D A + + YDR EEHYNLISALHKS+RG+D DA +YW ARMLEGGE P
Sbjct: 259 PLIPKDLAA-LLSRRAVLYDRDREEHYNLISALHKSLRGSDPDAGLYWFARMLEGGEDPR 317
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG ADP AL AV+ +Q LG PE + LAQ V +LA APKS ++
Sbjct: 318 YIARRLTRFAAEDVGQADPNALPMAVAAWQTYERLGSPEGELALAQVVVHLATAPKSNAV 377
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A AA+K+ RE+ P H+ NAPT LMK+IGYGKGY Y D D + Q++ P
Sbjct: 378 YAAYKAARKLARETGSLMP--PSHILNAPTALMKDIGYGKGYEYDHDSEDAFSGQNYFPE 435
Query: 541 SLE 543
+E
Sbjct: 436 GME 438
>gi|429751014|ref|ZP_19283986.1| recombination factor protein RarA [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429162892|gb|EKY05166.1| recombination factor protein RarA [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 426
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 186/428 (43%), Positives = 263/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + VGQ+HL+ LR + S LPS+IFWGPPGTGKTTLA I
Sbjct: 4 PLAERMRPTTLAQYVGQEHLVGAQGALRQQIESGFLPSLIFWGPPGTGKTTLANIIAQQS 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +F LSA++SG+K+VR+ ++ +++ + +++ ++F+DE+HRFNK+QQDS L +
Sbjct: 64 --NRRFFTLSAISSGIKEVREVIDQSKQGGGLFTHQNAIVFIDEIHRFNKTQQDSLLQAV 121
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF +I LLSRC+V LN + D+E+LL A+ N+ L K
Sbjct: 122 EKGWITLIGATTENPSFEVIPALLSRCQVYVLNAFERKDLELLLHNAI--ANDELLK--- 176
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ E+ E L GD R LN E+ + PV
Sbjct: 177 --KREIVLKETEALLRLSGGDGRKLLNTFELIVNAIPIGEPV------------------ 216
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T D Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 217 --VITNDSVLHLVQKNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGEDV 274
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASED+G A+P A+ A + +QA +G PE +IL+QC YLA +PKS +
Sbjct: 275 KFIARRMLILASEDIGNANPTAMILANNTFQAVTTIGYPEARIILSQCAIYLASSPKSNA 334
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLP 539
Y+A+G AQ+V++++ + VP+HLRNAPTKLMKE+GYGK Y+Y D A Q +LP
Sbjct: 335 SYKAIGKAQQVVKQT--GDLPVPIHLRNAPTKLMKELGYGKDYLYAHDYDQNFAFQDYLP 392
Query: 540 PSLEGYKF 547
L+G F
Sbjct: 393 DDLQGEVF 400
>gi|393761655|ref|ZP_10350292.1| recombination factor protein RarA [Alishewanella agri BL06]
gi|392607665|gb|EIW90539.1| recombination factor protein RarA [Alishewanella agri BL06]
Length = 447
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 188/423 (44%), Positives = 265/423 (62%), Gaps = 33/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D VGQ HLL+ S L+ A+ + R+ S+I WGPPGTGKTTLA+ I
Sbjct: 14 PLAARLRPAQLKDYVGQQHLLADGSPLQQAILAGRVHSLILWGPPGTGKTTLAELIAGHA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVT+G+K++RD+++ A+ + + +RT+LFVDEVHRFNK+QQD+FLP IE
Sbjct: 74 KAQMQ--RLSAVTAGIKEIRDSIQQAKLHQQQYQQRTLLFVDEVHRFNKAQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENP+F L +LSR RV L PL D++ +L RA+ D GL G
Sbjct: 132 DGTIIFIGATTENPAFALNNAILSRARVCVLKPLTEADLQQVLARALSDAELGL----GA 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + A + L +GDAR LN LE ++ E+ SP
Sbjct: 188 QQLTLEPAAEQLLLRLANGDARRLLNLLE-------------QLAEL---------SPAQ 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +T+ ++ + +DR G+ Y+LISALHKS+RG+D DAA+YW AR+L GG PL
Sbjct: 226 SELTVAQVQQIVPQQLPGFDRDGDLFYDLISALHKSVRGSDPDAALYWFARILAGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP AL A++ + +G E +AQ + YLALAPKS ++
Sbjct: 286 YVARRLLAIASEDIGNADPRALTLALNAWDTFSRVGPAEGERAIAQALVYLALAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+ ++ E + VPLHLRNAPT L +++G+G GY Y D+P +A + +LP
Sbjct: 346 YLAFNQAKALVAERP--DYPVPLHLRNAPTALQQQLGHGAGYRYAHDEPGAYAAGERYLP 403
Query: 540 PSL 542
P L
Sbjct: 404 PEL 406
>gi|389774922|ref|ZP_10193041.1| recombination factor protein RarA [Rhodanobacter spathiphylli B39]
gi|388438521|gb|EIL95276.1| recombination factor protein RarA [Rhodanobacter spathiphylli B39]
Length = 451
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 194/432 (44%), Positives = 260/432 (60%), Gaps = 39/432 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +I+++VGQ L+ P+ LR A+ + ++ S++ WGPPG GKTTLA +
Sbjct: 27 PLAERMRPTSIDEIVGQQRLVGPDKALRRALEAGKIHSMVLWGPPGCGKTTLALLVARYA 86
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ +SAV SG+ DVR A+ +A ++ +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 87 DADFR--AISAVLSGLPDVRKALAEA-EVNFAQGRRTVLFVDEVHRFNKTQQDAFLPHIE 143
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+FIGATTENPSF L + LLSRCRV L P+ D+ LKRA+ D GL G
Sbjct: 144 RGVIIFIGATTENPSFELNSALLSRCRVHVLEPVSTADIIAALKRALADGERGL----GE 199
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++V+ ++E + DGD R AL LEI+A A R
Sbjct: 200 LQLQVSDASLESIAQAADGDVRRALTLLEIAAELAHER---------------------- 237
Query: 363 ALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
T+D+A + + +D+ GE+ Y+ ISALHKS+R +D DAA+YWL RML+GG
Sbjct: 238 ---TIDEATLSQVLADRTRRFDKQGEQFYDQISALHKSVRSSDPDAAVYWLCRMLDGGVD 294
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ R A EDVGLA+P A A+ + LG PE + LAQ +LA++PKS
Sbjct: 295 PLYLARRMTRMAVEDVGLAEPRAWRMALDAWDTYERLGSPEGELGLAQLAIWLAISPKSN 354
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSF 537
+ Y A A+ +R+ G VP+HLRNAPTKLMK +GYGKGY Y D Q
Sbjct: 355 AAYMAYNKARDAVRQ--GGTLDVPMHLRNAPTKLMKGLGYGKGYQYDHDAEGGIALDQQC 412
Query: 538 LPPSLEGYKFLD 549
LP L G F +
Sbjct: 413 LPDELVGSVFYE 424
>gi|187479165|ref|YP_787190.1| recombination factor protein RarA [Bordetella avium 197N]
gi|115423752|emb|CAJ50303.1| putative ATPase [Bordetella avium 197N]
Length = 459
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 196/438 (44%), Positives = 262/438 (59%), Gaps = 36/438 (8%)
Query: 109 HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPG 168
+D+ S H P+ PL+ER+RP + DVVGQ HLL P+ LR A S R S+IFWGPPG
Sbjct: 19 NDLFSADPAHRPYVPLAERLRPRTLADVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPG 78
Query: 169 TGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228
GKTTLA+ + + F+ +SAV GVKD+RDAV A ++ +RT+LFVDEVHR
Sbjct: 79 VGKTTLARLMADGF--DAHFIAISAVLGGVKDIRDAVTAA-QVAQGQGRRTILFVDEVHR 135
Query: 229 FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA 288
FNK+QQD+FLP +E G FIGATTENPSF + + LLSR RV L L P ++ +L+ RA
Sbjct: 136 FNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSPEELMLLVDRA 195
Query: 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
V N G + A E L + DGDAR ++A+E+ V E E
Sbjct: 196 VAAFNEGRPP------IRFEASAREQLAAWADGDARRLISAVEV----------VAESAE 239
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAA 407
DE + ++L ++L +D+ G+ Y+ ISALHK++RG+D DA+
Sbjct: 240 AAGRDEVNAEWLEISL-----------SQNLRRFDKGGDAFYDQISALHKAVRGSDPDAS 288
Query: 408 IYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILA 467
+YW ARML+GG P Y+ARR+VR A ED+GLADP A + A+ LG PE + LA
Sbjct: 289 LYWFARMLDGGADPKYLARRIVRMAIEDIGLADPRATDLALRGADVYERLGSPEGELALA 348
Query: 468 QCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT 527
Q V YLA A KS ++Y A A+K E + VPLHLRNAPTKLMK++G+G Y Y
Sbjct: 349 QAVVYLACAAKSNAVYNAYNTARKFAAEH--GSAPVPLHLRNAPTKLMKQLGHGHAYRYA 406
Query: 528 PDDP---SAKQSFLPPSL 542
D+P +A +S+ P +
Sbjct: 407 HDEPHGYAAGESYFPDGM 424
>gi|365122514|ref|ZP_09339415.1| hypothetical protein HMPREF1033_02761 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642262|gb|EHL81620.1| hypothetical protein HMPREF1033_02761 [Tannerella sp.
6_1_58FAA_CT1]
Length = 424
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 263/425 (61%), Gaps = 37/425 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP N+++ +GQ+HL+ ++LR + + ++ S I WGPPG GKTTLAK I N +
Sbjct: 4 PLAERLRPQNLDEYIGQEHLVGKGAILRRMIDAGQISSFILWGPPGVGKTTLAKIISNQL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSA+ SGVKDVRD +E + R+ R +LF+DE+HRFNKSQQDS L +E
Sbjct: 64 DVP--FYTLSAIHSGVKDVRDVIEKCKNNRMFQTGRPILFIDEIHRFNKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC+V L L+ +++ LL RA+ K +
Sbjct: 122 NGTVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEVKNLQALLDRAIH-----CDKVLKN 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++++ F S GDAR LN L++ IT++ E E+
Sbjct: 177 LKIKIQETNALFRYSG--GDARKLLNILDL--ITSS--------NETEKT---------- 214
Query: 363 ALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ +DDA E Q AYD+ GE HY++ISA KS+RG+D D AIYWLARM+ GGE
Sbjct: 215 --IIIDDATVTERLQQNPSAYDKGGEMHYDIISAFIKSIRGSDPDGAIYWLARMVAGGED 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRLV A+ED+GLA+P AL A +C+ A +G PE +ILA+ YLA +PKS
Sbjct: 273 PAFIARRLVISAAEDIGLANPNALLIANACFDALQNIGWPEGRIILAEATIYLASSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+ A ++ E G N VPLHLRNAPT LMKE+ YGK Y Y D + KQ FL
Sbjct: 333 SAYMAINDALGIV-ERTG-NLPVPLHLRNAPTSLMKELEYGKNYKYAHDYENHFVKQQFL 390
Query: 539 PPSLE 543
P L+
Sbjct: 391 PDELK 395
>gi|389812059|ref|ZP_10206320.1| recombination factor protein RarA [Rhodanobacter thiooxydans LCS2]
gi|388439883|gb|EIL96332.1| recombination factor protein RarA [Rhodanobacter thiooxydans LCS2]
Length = 456
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 194/432 (44%), Positives = 261/432 (60%), Gaps = 39/432 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER RP +++++VGQ L+ P+ LR A+ + ++ S++ WGPPG GKTTLA +
Sbjct: 32 PLAERTRPRSLDEIVGQQRLVGPDKALRRALEAGKIHSMVLWGPPGCGKTTLALLVARYA 91
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ +SAV SG+ DVR A+ +A +L +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 92 DADFR--AISAVLSGLPDVRKALAEA-ELNFAQGRRTVLFVDEVHRFNKTQQDAFLPHIE 148
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+FIGATTENPSF L + LLSRCRV L P+ D+ LKRA+ D GL G
Sbjct: 149 RGVIIFIGATTENPSFELNSALLSRCRVHVLEPVSTGDIIAALKRALIDDERGL----GA 204
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++V+ +A++ + DGD R AL LEI+A A R
Sbjct: 205 LQLQVSEEALDSIAQAADGDVRRALTLLEIAAELAEDR---------------------- 242
Query: 363 ALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
T+D+A + + +D+ GE+ Y+ ISALHKS+R +D DAA+YWL RML+GG
Sbjct: 243 ---TIDEATLTQVLADRTRRFDKQGEQFYDQISALHKSVRSSDPDAAVYWLCRMLDGGVD 299
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ R A EDVGLA+P A A+ + LG PE + LAQ +LA+APKS
Sbjct: 300 PLYLARRMTRMAVEDVGLAEPRAWRMALDAWDTYERLGSPEGELGLAQLAIWLAIAPKSN 359
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSF 537
+ Y A A+ +R+ G VP+HLRNAPTKLMK +GYGKGY Y D Q
Sbjct: 360 AAYMAYNKARDAVRQ--GGTLEVPMHLRNAPTKLMKGLGYGKGYQYDHDAEGGIALDQQC 417
Query: 538 LPPSLEGYKFLD 549
LP +L G F +
Sbjct: 418 LPDALAGNIFYE 429
>gi|373110815|ref|ZP_09525077.1| hypothetical protein HMPREF9712_02670 [Myroides odoratimimus CCUG
10230]
gi|371641691|gb|EHO07271.1| hypothetical protein HMPREF9712_02670 [Myroides odoratimimus CCUG
10230]
Length = 433
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 184/431 (42%), Positives = 266/431 (61%), Gaps = 35/431 (8%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
+ + APL+ER+RP ++D V Q+HL+ N +L + + +PS+IFWGPPGTGKTTLA+
Sbjct: 6 ITIMEAPLAERVRPHTLSDYVSQEHLVGENGILTNQLKVGFIPSLIFWGPPGTGKTTLAE 65
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQD 235
I F LSA+ SGVKD+R+ +E A+ + + + +LF+DE+HRF+KSQQD
Sbjct: 66 IIAKES--ERPFYVLSAINSGVKDIREVIEKAKSNSGLFTARNPILFIDEIHRFSKSQQD 123
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
S L +E G + IGATTENPSF +I LLSRC+V TLN D++ LL+RA
Sbjct: 124 SLLAAVERGWVTLIGATTENPSFEVIPALLSRCQVYTLNAFTKEDLQHLLERA------- 176
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
++K + + ++ E L GD R LN E+ + +DE
Sbjct: 177 MNKDLFLKKKKITLTETEALFRISGGDGRKLLNTFEL-------------IINATHDDEI 223
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+ +T + + Q + YD+ GE+HY+++SA KS+RG+D + A+YWLARM+
Sbjct: 224 E--------ITNERVMQVVQKNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMI 275
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGE +IARRL+ ASED+G A+P AL A + +QA +G PE ++L+QC YLA
Sbjct: 276 EGGEDVKFIARRLLIAASEDIGNANPTALIMANNTFQAVSVIGYPESRILLSQCAIYLAT 335
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSA 533
+PKS S Y A+G AQ++++++ + VP+HLRNAPTKLMKE+GYGK Y+Y+ D +
Sbjct: 336 SPKSNSTYLAIGKAQQLVKQT--GDLSVPIHLRNAPTKLMKELGYGKEYLYSHDYTNNFV 393
Query: 534 KQSFLPPSLEG 544
+Q FLP LEG
Sbjct: 394 EQEFLPDELEG 404
>gi|365896286|ref|ZP_09434368.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. STM 3843]
gi|365422999|emb|CCE06910.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. STM 3843]
Length = 443
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 263/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL E++RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 25 PLPEKLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD-- 82
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SAV SGV D++ A DA + R ++ K T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 83 ATELHFEQISAVFSGVADLKKAF-DAARARRETGKGTLLFVDEVHRFNRAQQDSFLPVME 141
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL + L +E L A ++V G
Sbjct: 142 DGTVVLVGATTENPSFELNAALLSRARVLVFHSLDAAAIEKLYANA---------EAVEG 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ +A L DGD R AL E EV ++DE
Sbjct: 193 RKLPLDDEARAVLIRMADGDGRAALTLAE-------------EVWRSARKDE-------- 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E Q + YD++ + HYNLISALHKS+RG+D DAA+Y+ ARML+ GE PL
Sbjct: 232 -IFNAAQLQEILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYFARMLDAGEDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS +
Sbjct: 291 FLARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+A GAA++V +E G + P H+ NAPT+LM+ GYG GY Y D P A Q + P
Sbjct: 351 YKAFGAAKRVAKE--GGSLLPPKHILNAPTRLMQNEGYGSGYQYDHDAPDAFSGQDYFPE 408
Query: 541 SLEGYKFLDWPK 552
SL F D P+
Sbjct: 409 SLGRQHFYDPPE 420
>gi|452992666|emb|CCQ95825.1| Uncharacterized AAA domain-containing protein YrvN [Clostridium
ultunense Esp]
Length = 412
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 191/424 (45%), Positives = 265/424 (62%), Gaps = 30/424 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL++RMRP + + VGQ+H++ N L A+ ++R+ S+IF+GPPGTGKTTLA I NS
Sbjct: 16 APLADRMRPRTLEEFVGQEHIIGENKFLYRAIKADRITSMIFYGPPGTGKTTLAMIIANS 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+++ F LSAVTSGVKD+R+ + A + NK+T+LF+DE+HRFNK+QQD+ LP +
Sbjct: 76 TSMN--FEKLSAVTSGVKDIREVIHRAEENLKLYNKKTILFIDEIHRFNKAQQDALLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENP F + LLSR V+ LNPL D+ ++K + + GL G
Sbjct: 134 ERGIIILIGATTENPYFEVNKALLSRMMVIPLNPLTREDILKIIKNGLTNKEKGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+V+++ A+++L + DGD R ALN+LEI ++ E E+
Sbjct: 190 NYKVKIDKKALDYLITIADGDGRFALNSLEIGVLSTP-----------ENEEGI------ 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ LD KE K YD+ G+EHYN ISA KSMRG+D DA +YWLA+M+ GE P
Sbjct: 233 -IKIDLDIIKECILVKTAKYDKGGDEHYNTISAFIKSMRGSDPDATLYWLAKMINAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL+ AVS + A + +GMPE +ILAQ Y+A APKS +
Sbjct: 292 KFIARRIIICASEDVGNADPQALSVAVSAFNAVNVIGMPEGRIILAQAAVYVACAPKSNA 351
Query: 482 IYRALGAAQKVIRES-VGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFL 538
Y + A + IR +G+ VP HL++A K +G+GKGY+Y D A KQ +L
Sbjct: 352 SYIGIDKALEDIRNKPIGK---VPNHLKDASYKGATNLGHGKGYMYPHDYDKAYVKQQYL 408
Query: 539 PPSL 542
P L
Sbjct: 409 PDGL 412
>gi|449295172|gb|EMC91194.1| hypothetical protein BAUCODRAFT_80240 [Baudoinia compniacensis UAMH
10762]
Length = 571
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 262/430 (60%), Gaps = 31/430 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
HAPL+ERMRP +++V GQ+ L+ PN +LR+ + ++R+PS+I WG PGTGKTT+A+ I
Sbjct: 131 HAPLAERMRPQTLDEVAGQE-LVGPNGVLRNLILTDRVPSMILWGGPGTGKTTIARLIAQ 189
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +FV +++ +SGV + + +A+ + ++T++F DE+HRF+KSQQD FL
Sbjct: 190 TAGT--RFVEINSTSSGVAECKKLFAEAKNELGLTGRKTIIFCDEIHRFSKSQQDVFLGP 247
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF ++ LLSRCR TL+ L +V +LKRA+ GL
Sbjct: 248 VEAGQVTLIGATTENPSFKVVNALLSRCRTFTLSKLSGDNVFGILKRALGQEVPGLPTPA 307
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++ + +L DGDAR LN + P
Sbjct: 308 --PSPNDDYALVRYLAEFADGDARTGLNL--LELALDLCEKPA----------------- 346
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T +D +++ + L YDRAG++HY+ ISA HKS+RG++ADAA+Y+LARML+ GE
Sbjct: 347 ----LTAEDIRKSL-TQTLVYDRAGDQHYDTISAFHKSVRGSNADAALYYLARMLQSGED 401
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+V ASEDVGLAD L+ A + Y A +GMPEC + LA C L+LA KS
Sbjct: 402 PLYVARRMVVIASEDVGLADNSLLSLATATYSAAEKIGMPECRINLAHCAVALSLARKST 461
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
YR L AA + + E VP+HLRNAPTKLMKE+GYGK Y Y PD D Q +L
Sbjct: 462 RAYRGLNAAYRALSEPGMAGLPVPIHLRNAPTKLMKELGYGKEYKYNPDYADGRVVQDYL 521
Query: 539 PPSLEGYKFL 548
P LEG +FL
Sbjct: 522 PAKLEGRRFL 531
>gi|423132074|ref|ZP_17119724.1| hypothetical protein HMPREF9714_03124 [Myroides odoratimimus CCUG
12901]
gi|371640111|gb|EHO05717.1| hypothetical protein HMPREF9714_03124 [Myroides odoratimimus CCUG
12901]
Length = 425
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 264/426 (61%), Gaps = 35/426 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP ++D V Q+HL+ N +L + + +PS+IFWGPPGTGKTTLA+ I
Sbjct: 3 APLAERVRPHTLSDYVSQEHLVGENGILTNQLKVGFIPSLIFWGPPGTGKTTLAEIIAKE 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F LSA+ SGVKD+R+ +E A+ + + + +LF+DE+HRF+KSQQDS L
Sbjct: 63 S--ERPFYVLSAINSGVKDIREVIEKAKSNSGLFTARNPILFIDEIHRFSKSQQDSLLAA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF +I LLSRC+V TLN D++ LL+RA ++K +
Sbjct: 121 VERGWVTLIGATTENPSFEVIPALLSRCQVYTLNAFTKEDLQHLLERA-------MNKDL 173
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ ++ E L GD R LN E+ + +DE +
Sbjct: 174 FLKKKKITLTETEALFRISGGDGRKLLNTFEL-------------IINATHDDEIE---- 216
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T + + Q + YD+ GE+HY+++SA KS+RG+D + A+YWLARM+EGGE
Sbjct: 217 ----ITNERVMQVVQKNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMIEGGED 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARRL+ ASED+G A+P AL A + +QA +G PE ++L+QC YLA +PKS
Sbjct: 273 VKFIARRLLIAASEDIGNANPTALIMANNTFQAVSVIGYPESRILLSQCAIYLATSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+G AQ++++++ + VP+HLRNAPTKLMKE+GYGK Y+Y+ D + +Q FL
Sbjct: 333 STYLAIGKAQQLVKQT--GDLSVPIHLRNAPTKLMKELGYGKEYLYSHDYTNNFVEQEFL 390
Query: 539 PPSLEG 544
P LEG
Sbjct: 391 PDELEG 396
>gi|326382066|ref|ZP_08203759.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
B-59395]
gi|326199492|gb|EGD56673.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
B-59395]
Length = 435
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 191/407 (46%), Positives = 253/407 (62%), Gaps = 39/407 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++ VVGQ+H+L P+ + V +RL S+I WGPPG GKTT+A+ +
Sbjct: 15 PLADRLRPQSLAAVVGQEHVLGPDGAIGRMVTEHRLASMILWGPPGCGKTTIARLLAEQT 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ F LSA SGV D+R A+K R + + T+LFVDEVHRFN++QQDSFLP +E
Sbjct: 75 DLA--FEPLSATFSGVADLRKVFLAAQKRR-EVGQGTLLFVDEVHRFNRAQQDSFLPYVE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+IV +GATTENPSF L LLSRC+V L L + L+ RA + L
Sbjct: 132 DGTIVLVGATTENPSFELNAALLSRCQVFVLKRLDEAALTTLIGRAESLLRRALP----- 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ D + L + DGD R LN +E +++ V + DG
Sbjct: 187 ----LSEDGRQALIAMADGDGRYLLNLVE-------------QLQHVSGTLDVDG----- 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LV L Q + YD++ E HYNLISALHKSMRG+D DAA+YWLARML+GGE PL
Sbjct: 225 -LVDL------VQRRAPLYDKSQEGHYNLISALHKSMRGSDPDAALYWLARMLDGGEDPL 277
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVRFASEDVG+ADP A+ A++ + A LG PE + +AQ V YLA APKSI++
Sbjct: 278 YVARRLVRFASEDVGIADPDAVRHALAAWDAYERLGSPEGELAIAQIVVYLATAPKSIAV 337
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
YR GAA+K+ + + P H+ NAPT LM+E+GYG GY Y PD
Sbjct: 338 YRGFGAARKLAKRTGSLMP--PAHILNAPTGLMRELGYGSGYQYDPD 382
>gi|162456465|ref|YP_001618832.1| recombination factor protein RarA [Sorangium cellulosum So ce56]
gi|161167047|emb|CAN98352.1| ATPase [Sorangium cellulosum So ce56]
Length = 460
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 257/430 (59%), Gaps = 33/430 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ D++GQ HLL LL A+ ++R+PS+I WGPPG GKTTLA+ + ++
Sbjct: 37 PLAERMRPRSLEDMIGQGHLLGEGKLLARAIAADRIPSMILWGPPGAGKTTLARVVAHTT 96
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ +FV +AV GV ++R+ + AR R KRT+LFVDE+HRFNK+QQD+FLP +E
Sbjct: 97 --NARFVPFNAVLGGVPELREILAQARAARSYEGKRTILFVDEIHRFNKAQQDAFLPHVE 154
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I IGATTENPSF + PLLSRC+V L L ++ LL+RA++
Sbjct: 155 DGTITLIGATTENPSFAVNAPLLSRCKVFRLQGLGASELVELLRRALESPAGLAGAIAAD 214
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
A+ GDAR AL LEI+A ++ +P +
Sbjct: 215 DDALSAIAAL------AQGDARRALTTLEIAA-----------------DEAGRAGAPTI 251
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ A E K L YD+AGEEHYN+ISA KSMRG+D DAAIYWL RM+E G+ PL
Sbjct: 252 TRELIAGASE---HKTLLYDKAGEEHYNVISAFIKSMRGSDPDAAIYWLMRMIEAGDDPL 308
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ RR++ FASED+G ADP AL AV+ A +GMPE L Q YLA APKS +
Sbjct: 309 FLLRRMMIFASEDIGNADPRALEIAVAADAAFRRMGMPEGLYPLTQAALYLATAPKSNAC 368
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
A AAQ +RE VPL LRNA T+LM++ GYG+GY Y D+P +++LP
Sbjct: 369 KTAWHAAQAAVREHGALP--VPLTLRNAVTRLMRDEGYGEGYRYAHDEPGGVALGEAYLP 426
Query: 540 PSLEGYKFLD 549
L G +F +
Sbjct: 427 EPLAGSRFYE 436
>gi|440464761|gb|ELQ34129.1| DNA-dependent ATPase MGS1 [Magnaporthe oryzae Y34]
gi|440489195|gb|ELQ68870.1| DNA-dependent ATPase MGS1 [Magnaporthe oryzae P131]
Length = 877
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 200/430 (46%), Positives = 270/430 (62%), Gaps = 17/430 (3%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQD L+ P+ +LRS + S+R+PS+I WG GTGKTT+A+ I +
Sbjct: 446 APLAERMRPRTLDDVYGQD-LVGPSGVLRSLIDSDRVPSMILWGGSGTGKTTIARCIAQT 504
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV L+A ++GV + + ++A + +RT++F DE+HRFNK+QQD FL +
Sbjct: 505 VG--SRFVELNATSTGVNECKKLFQEAASELGLTGRRTIIFCDEIHRFNKAQQDVFLKPV 562
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + + LLSRCR TL+ L DV+ +L RA+D+ V
Sbjct: 563 EAGTITLIGATTENPSFRVQSALLSRCRTFTLSKLTSEDVQRILVRALDEEQKIAGDDVQ 622
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + I +L + DGDAR ALN LE++ R+ + + D +
Sbjct: 623 PASPLIDAEMIAYLANFADGDARTALNLLELALSLTRPRI----------DGDGDVAAGP 672
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VAL T +D K A K L YDRAG++HY+ ISA HKS+RG+D DAA+Y+LARML+ GE P
Sbjct: 673 VAL-TKEDVKSAL-TKTLVYDRAGDQHYDNISAFHKSIRGSDPDAALYYLARMLQSGEDP 730
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARRLV ASEDVGLAD L A + Y A +G+PE + LA L LAPKS
Sbjct: 731 LFIARRLVVVASEDVGLADNTLLPLATAAYTAAQQIGLPEARIPLAHATVALCLAPKSTR 790
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR L A +RE VP+HLRNAPT+LM+E+GYG Y Y P+ D KQ +LP
Sbjct: 791 AYRGLNNAFTALREPGVAALPVPIHLRNAPTRLMREMGYGAEYKYNPNYKDGKVKQQYLP 850
Query: 540 PSLEGYKFLD 549
L G +FL+
Sbjct: 851 DDLVGRRFLE 860
>gi|220932040|ref|YP_002508948.1| recombination factor protein RarA [Halothermothrix orenii H 168]
gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
Length = 450
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 268/428 (62%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++ GQ+ ++ P LR A+ ++R+ S+I +GPPG GKT+LA+ I
Sbjct: 19 PLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILYGPPGCGKTSLAQVIARKT 78
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF+ ++AVTSGV +R+ ++ A K R +T+LF+DE+HRFNKSQQD+ LP +E
Sbjct: 79 --EGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHRFNKSQQDALLPAVE 136
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENP F + +PLLSR R++ L PLK D+ +LK A+++ GL G
Sbjct: 137 SGTITLIGATTENPYFEVNSPLLSRSRIVRLKPLKKEDIIKILKNALNNEERGL----GN 192
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++++ DA+++L S GDAR ALN LEI+ +T P KE +
Sbjct: 193 YNIDISQDALQYLASIAGGDARTALNGLEIAVLTTP---PDKEG---------------I 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ + E+ Q K L YD+ G+ HY+++SA KSMRG+D DAA++WLARMLE GE P
Sbjct: 235 IHINKNIISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLESGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++ A+EDVG+ADP+AL A S A ++G+PE + LA+ V Y+A APKS S+
Sbjct: 295 FIARRIIVHAAEDVGMADPMALVVATSAANAVEYVGLPEARIPLAEAVIYIATAPKSNSV 354
Query: 483 YRALGAAQKVIRES-VGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQSFLP 539
+ AA ++ + G+ VPLHLR+A K + + +G GY Y D P KQ ++P
Sbjct: 355 ITGIDAALNYVKNNDTGE---VPLHLRDAHYKGARNLKHGLGYKYPHDYPYHYVKQQYVP 411
Query: 540 PSLEGYKF 547
+ G +F
Sbjct: 412 DEVTGTEF 419
>gi|114047507|ref|YP_738057.1| recombination factor protein RarA [Shewanella sp. MR-7]
gi|113888949|gb|ABI43000.1| Recombination protein MgsA [Shewanella sp. MR-7]
Length = 443
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 263/428 (61%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I + +GQ HLL LR A+ + R S++ WGPPGTGKTTLA+ I +
Sbjct: 14 PLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAHYS 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVKD+R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKDIRAAIEQAQAVAQSRRQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ ++ +A+ D GL G
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALTDAERGL----GQ 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + D + L CDGDAR ALN LE+ + A DG S
Sbjct: 188 RQLIMPTDVLNKLAQLCDGDARKALNLLELMSDMVA-----------------DGGS--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
T + + + +D+ G++ Y+LISA+HKS+RG+ DAA+YW R+LEGG PL
Sbjct: 228 --FTTEMLVQVAGHQVAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + H +G E +AQ + YLA APKS ++
Sbjct: 286 YVARRLLAIASEDVGNADPNAMTVALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+ + RE+ GQ E VP HLRNAPTKLM E+G+G Y Y D+P+A S + P
Sbjct: 346 YTAFKAARALARET-GQ-EAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFP 403
Query: 540 PSLEGYKF 547
SL+ +F
Sbjct: 404 ESLQASQF 411
>gi|30249052|ref|NP_841122.1| recombination factor protein RarA [Nitrosomonas europaea ATCC
19718]
gi|30138669|emb|CAD84964.1| Uncharacterized ATPase related to the helicase subunit of the
Holliday junction resolvase [Nitrosomonas europaea ATCC
19718]
Length = 439
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 194/440 (44%), Positives = 268/440 (60%), Gaps = 36/440 (8%)
Query: 111 VDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTG 170
DS + P APL+ER+RP ++DVVGQ HLL P LR A S + S+I WGPPG+G
Sbjct: 2 TDSPHTIRNPAAPLAERLRPRTLDDVVGQSHLLGPGKPLRLAFESGKPHSMILWGPPGSG 61
Query: 171 KTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
KTTLA+ + + A +F+ +SAV SGVKD+R+A+E A+ ++ + T+LFVDEVHRFN
Sbjct: 62 KTTLARLMAH--AFDAEFIAISAVLSGVKDIREAIERAQITLQRTGRATLLFVDEVHRFN 119
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
K+QQD+FLP +E G I FIGATTENPSF + LLSR +V L L ++ L +RA
Sbjct: 120 KAQQDAFLPHVEQGLITFIGATTENPSFEVNGALLSRAQVYALKALTDQELHQLFERA-- 177
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
+S+ +E + AIE L DGDAR LN LE V+ E E
Sbjct: 178 -------RSIAMLDLEFENTAIELLIGFADGDARRLLNLLE----------QVQNAAETE 220
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYW 410
+ + D + Y++ V + + +D+ G+ Y+ ISALHKS+RG+ DAA+YW
Sbjct: 221 EIIKID--ADYLSRVLARNVRR--------FDKGGDAFYDQISALHKSIRGSSPDAALYW 270
Query: 411 LARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCV 470
L RML+GG P YI RRLVR A+ED+GLADP AL A++ + LG PE + LAQ
Sbjct: 271 LCRMLDGGADPRYIGRRLVRTATEDIGLADPRALTLALNACEVFERLGSPEGELALAQAT 330
Query: 471 AYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD 530
YLA APKS + Y A A+ I+E + + VP+HLRNAPT+LM+E+G+G Y Y D+
Sbjct: 331 LYLACAPKSNAAYVAYKQARAFIKEDISRP--VPIHLRNAPTRLMREMGHGAAYRYAHDE 388
Query: 531 P---SAKQSFLPPSLEGYKF 547
+A +++ P ++ +F
Sbjct: 389 SESYAAGENYFPDNILAVQF 408
>gi|325915378|ref|ZP_08177695.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
gi|325538425|gb|EGD10104.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
Length = 457
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 199/428 (46%), Positives = 258/428 (60%), Gaps = 34/428 (7%)
Query: 106 KTRHDVDSTTALHVPHA----PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSI 161
+TR +DST L A PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+
Sbjct: 3 RTRTTIDSTADLLSVDADHLRPLAERMRPRTLDEMVGQKRLLTPDSALRRAVESGRVHSM 62
Query: 162 IFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVL 221
I WGPPG GKTTLA + + +K +SAV SG+ DVR + +A + R S +RTVL
Sbjct: 63 ILWGPPGCGKTTLALLLAHYADAEFK--AISAVLSGLPDVRQVLAEAAQ-RFASGRRTVL 119
Query: 222 FVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDV 281
FVDEVHRFNK+QQD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+
Sbjct: 120 FVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLESVSPQDI 179
Query: 282 EILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRV 341
L+RA+ D GL + ++V+ ++ + S DGD R AL LEI+A A
Sbjct: 180 VDALQRALHDPERGLGQET----IQVSDASLLEIASAADGDVRRALTLLEIAAELAG--- 232
Query: 342 PVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRG 401
E +P L L D F D+ GE+ Y+ ISALHKS+R
Sbjct: 233 -----------GEGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRS 274
Query: 402 NDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPE 461
++ DAA+YWL RML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE
Sbjct: 275 SNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPE 334
Query: 462 CNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYG 521
+ AQ V YLA KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG
Sbjct: 335 GELAFAQLVLYLASTAKSNAGYAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYG 392
Query: 522 KGYIYTPD 529
+ Y Y D
Sbjct: 393 QDYQYDHD 400
>gi|224826932|ref|ZP_03700031.1| AAA ATPase central domain protein [Pseudogulbenkiania ferrooxidans
2002]
gi|224600919|gb|EEG07103.1| AAA ATPase central domain protein [Pseudogulbenkiania ferrooxidans
2002]
Length = 439
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 191/433 (44%), Positives = 260/433 (60%), Gaps = 35/433 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+E +RP ++++V+GQ HL+ P LR AV S S+I WGPPG GKTTLA+ +
Sbjct: 9 PKKPLAEALRPTSLDEVIGQPHLIGPGKPLRLAVESKTPHSMILWGPPGVGKTTLARILA 68
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+S +F+ LSAV SGVKD+R+AV+ A+ + + + T+LFVDEVHRFNKSQQD+FLP
Sbjct: 69 HSFDA--EFIPLSAVFSGVKDIREAVDRAQAVLQRDGRHTILFVDEVHRFNKSQQDAFLP 126
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + FIGATTENPSF + + LLSR +V LN L D + L RAV S +
Sbjct: 127 YVESGLLTFIGATTENPSFEVNSALLSRAQVYVLNALADDDFKALFARAV------ASGA 180
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ G + + A+ L DGDAR LN LE + A+ R
Sbjct: 181 LPG--LTFDDSALATLSGYADGDARRFLNLLEQTRTAASAR------------------- 219
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+V + D E +D+ G+ Y+ ISALHKS+RG+ D A+YWL RML+GG
Sbjct: 220 -HVEHIDADFLAEVLTVNARRFDKGGDAFYDQISALHKSVRGSSPDGALYWLTRMLDGGA 278
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRLVR A ED+GLADP A A+ LG PE + LAQ YLA+APKS
Sbjct: 279 DPRYLARRLVRMAWEDIGLADPRAARIALDAADTYERLGSPEGELALAQAAIYLAVAPKS 338
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
+ Y+A A+ IR+ + + VP+HLRNAPT+LMKE+GYG Y Y D+P +A ++
Sbjct: 339 NAGYKAYNEARAFIRQDISRP--VPVHLRNAPTRLMKELGYGHAYRYAHDEPHAYAAGET 396
Query: 537 FLPPSLEGYKFLD 549
+LP +E ++ +
Sbjct: 397 YLPEGIEDSRWYE 409
>gi|429769331|ref|ZP_19301444.1| recombination factor protein RarA [Brevundimonas diminuta 470-4]
gi|429187345|gb|EKY28261.1| recombination factor protein RarA [Brevundimonas diminuta 470-4]
Length = 436
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 268/440 (60%), Gaps = 39/440 (8%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
D+ + +H P APL++R+RP ++ VVGQDHLL +R + + RL S+I WGPPGT
Sbjct: 3 DLFEASGIHPPDAPLADRLRPQALDQVVGQDHLLGEGGPIRRMIEAGRLGSMILWGPPGT 62
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTT+A+ + A Y++ +SAV SGV D++ A E AR +R + ++T+LFVDE+HRF
Sbjct: 63 GKTTIARLLAK--AAGYEYQSISAVFSGVADLKKAFEAAR-MRRAAGQQTLLFVDEIHRF 119
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
N++QQD FLP +E+G + +GATTENPSF L LLSR +V L L +++LL RA
Sbjct: 120 NRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRSQVYVLKRLDDASLDLLLDRA- 178
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
+++ G + + +A + + + DGD R L E+ + ++ +V
Sbjct: 179 --------EALMGKSLPLTPEARQAMLALADGDGRYLLTMSEV----------LFDLTDV 220
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
E D AL + Q + AYD++ EEHYNLISALHKS+RG+D DAA+Y
Sbjct: 221 EPLDVQ-------ALAVV------LQKRAPAYDKSREEHYNLISALHKSVRGSDPDAALY 267
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
WLARML GGE PLY+ARR+VR A ED+G ADPL++ A + FLG PE + LAQ
Sbjct: 268 WLARMLNGGEDPLYLARRIVRMAVEDIGQADPLSILVANAAKDTYDFLGSPEGELALAQA 327
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
V +LA APKS+ +Y A AA++ E+ P H+RNAPT+LMK +GYGKGY Y PD
Sbjct: 328 VVHLATAPKSVGVYEAFKAAKRAAHETGSLMP--PAHIRNAPTRLMKSLGYGKGYQYDPD 385
Query: 530 DPS--AKQSFLPPSLEGYKF 547
P + F P +E F
Sbjct: 386 TPEGFSGADFFPDEMERRTF 405
>gi|91793101|ref|YP_562752.1| recombination factor protein RarA [Shewanella denitrificans OS217]
gi|91715103|gb|ABE55029.1| Recombination protein MgsA [Shewanella denitrificans OS217]
Length = 443
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 269/428 (62%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ +GQ HLL LR A+ +NR S++ WGPPGTGKTTLA+ I +
Sbjct: 14 PLAARMRPRVLSEYIGQSHLLGEGKALRVALEANRAHSMLLWGPPGTGKTTLAELIAHYA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAV+SGVKD+R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVSSGVKDIRAAIEQAKAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPYIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++F+GATTENPSF L LLSR RV ++ L ++ ++ +A++D GL K
Sbjct: 132 DGTVIFVGATTENPSFELNNALLSRARVYLIHKLTETEITEIIIQALEDTERGLGKR--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + + L DGDAR ALN +E+ + A DG +
Sbjct: 189 -QLIIPPEVMAELTHVSDGDARKALNLIELMSDLVA-----------------DGDA--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V L+ + K YD+ G++ Y+LISA+HKS+RG+ DAA+YW R+LEGG PL
Sbjct: 228 --VNLEMLSQVVGHKAAGYDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP+A+ A++ + H +G E +AQ V YLA APKS ++
Sbjct: 286 YVARRLLAIASEDIGNADPVAMTVALNAWDCFHRVGPAEGERAIAQAVLYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+++ + +E VP HLRNAPTKLMK + G+GY Y D+P +A + +LP
Sbjct: 346 YTAFSAARELAHAT--GHEAVPNHLRNAPTKLMKTLAVGEGYRYAHDEPNAYAAGECYLP 403
Query: 540 PSLEGYKF 547
PSLEG +F
Sbjct: 404 PSLEGQQF 411
>gi|340777610|ref|ZP_08697553.1| recombination factor protein RarA [Acetobacter aceti NBRC 14818]
Length = 462
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 195/438 (44%), Positives = 267/438 (60%), Gaps = 40/438 (9%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
H P PL++R+RP ++DVVGQ LL P L + L S+I WG PG GKTT+A+
Sbjct: 35 HTPTQPLADRLRPTTLDDVVGQQQLLGPTGALTLMLERGTLASLILWGGPGVGKTTIARL 94
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+ A + +FV LSAV SGV D++ A ++AR+ ++ + T+LFVDE+HRFN++QQD F
Sbjct: 95 LAK--AANLRFVQLSAVFSGVADLKKAFDEARRF-AEAGRGTLLFVDEIHRFNRAQQDGF 151
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LPV+E+G++V +GATTENPSF L + LLSRC+V+ L L +E LL RA ++ L
Sbjct: 152 LPVVENGTVVLVGATTENPSFALNSALLSRCQVMVLRRLDDPALEALLVRAEEETKRTLP 211
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
+ A L + DGD R LN +E ++ ++ E D
Sbjct: 212 ---------LTESARATLRAMADGDGRYLLNMVE-------------QILSLKTEKPLD- 248
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
S +A + AK A + YD+ EEHYNLISALHKS+RG+D DAA+YW ARMLEG
Sbjct: 249 -SQELARIL---AKRA-----VLYDKDREEHYNLISALHKSLRGSDPDAALYWFARMLEG 299
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P YIARRL RFA+EDVG+ADP AL A++ ++ LG PE + LAQ V +L AP
Sbjct: 300 GEDPRYIARRLTRFAAEDVGMADPSALPLAIAAWETYERLGSPEGELALAQLVVHLGTAP 359
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQ 535
KS ++Y+A GAA++ + + P H+ NAPTKLMKEIGYG GY Y D + + Q
Sbjct: 360 KSNAVYKAYGAARRAAKATGSLMP--PAHILNAPTKLMKEIGYGDGYQYDHDTEESFSGQ 417
Query: 536 SFLPPSLEGYKFLDWPKS 553
++ P ++ F + PK
Sbjct: 418 NYFPDGMKRQNFYN-PKG 434
>gi|167762677|ref|ZP_02434804.1| hypothetical protein BACSTE_01035 [Bacteroides stercoris ATCC
43183]
gi|167699017|gb|EDS15596.1| ATPase, AAA family [Bacteroides stercoris ATCC 43183]
Length = 422
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 196/443 (44%), Positives = 267/443 (60%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V++ IE + GDAR LN L++ +S+
Sbjct: 169 TDVQLKERQIELKETTAMLRYSGGDARKLLNILDLVV-------------------QSET 209
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
P V +T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 210 ADPVV--ITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISASEDIGLANPNALLLANACFDTIMKVGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A +++R++ N VPLHLRNAPTKLMK++GYG Y Y D P +Q
Sbjct: 328 KSNSAYMAINDALELVRQT--GNLPVPLHLRNAPTKLMKQLGYGDNYKYAHDYPGNFVRQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP L+ + + P++N ++
Sbjct: 386 QFLPDELKDRRIWE-PQANAAEQ 407
>gi|300778766|ref|ZP_07088624.1| replication-associated recombination protein A [Chryseobacterium
gleum ATCC 35910]
gi|300504276|gb|EFK35416.1| replication-associated recombination protein A [Chryseobacterium
gleum ATCC 35910]
Length = 425
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 265/438 (60%), Gaps = 34/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E++RP +NDV+GQ+HL +R + +N L S+IFWGPPGTGKTTLA+ I S
Sbjct: 6 PLAEKLRPKTLNDVLGQEHLTGDKGTIRKMIENNTLNSLIFWGPPGTGKTTLAEII--SE 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KF LSAV+SGVKDVRD +EDA+K + S K +LF+DE+HRFNKSQQDS L +E
Sbjct: 64 QSGRKFYKLSAVSSGVKDVRDVIEDAKKQNLFSGKSPILFIDEIHRFNKSQQDSLLHAVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IV IGATTENPSF +++ LLSR +V L L +E L+ A + N G
Sbjct: 124 KGWIVLIGATTENPSFEVVSALLSRSQVYILKALSYEKLEELIDIASERYNKD-----EG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T ++ E GDAR +N++E+ + Q SD
Sbjct: 179 TDFKILEK--EAFIQYSGGDARKLINSVELV---------------LNQYKNSDTKE--- 218
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ D E Q YD+ GE+HY++ISA KSMRG D + A+YWLARM+ GGE
Sbjct: 219 --ILNSDVLEVLQETMALYDKNGEQHYDIISAFIKSMRGGDPNGAVYWLARMIAGGEDIK 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++ A+EDVGLA+P AL A +C+QA + +G PE +IL++ YLA++PKS S
Sbjct: 277 FIARRMLILAAEDVGLANPNALVVANNCFQAINVIGNPEARIILSETAIYLAVSPKSNSA 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++++ N VPLHLRNAPTKLMK++ YGK Y Y + + +Q FLP
Sbjct: 337 YMAINEALALVKQT--GNLPVPLHLRNAPTKLMKDLNYGKDYKYAHSYEGNFVEQDFLPE 394
Query: 541 SLEGYKFLDWPKSNTTDK 558
+ K + P +N+T+K
Sbjct: 395 EIRNIKLYE-PGNNSTEK 411
>gi|410942980|ref|ZP_11374721.1| recombination factor protein RarA [Gluconobacter frateurii NBRC
101659]
Length = 470
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 253/423 (59%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + +V GQDHLL P L + L S+I WG PG GKTT+A+ +
Sbjct: 52 PLADRLRPKTLEEVRGQDHLLGPEGTLTRMLARGTLSSLILWGGPGCGKTTIARLLAGKA 111
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ Y + SAV SGV ++R A ++A K + + T+LFVDE+HRFN++QQD FLP +E
Sbjct: 112 NLFYSQI--SAVFSGVAELRKAFDEADKRQEAMGRGTLLFVDEIHRFNRAQQDGFLPYVE 169
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++V +GATTENPSF L LLSRC+VL LN L +E LL+RA ++V G
Sbjct: 170 RGTVVLVGATTENPSFALNAALLSRCQVLVLNRLDDASLEALLRRAEEEV---------G 220
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ ++ +A L + DGD R LN +E + P
Sbjct: 221 HRLPLDREARASLRAMADGDGRYLLNMVEQLVV----------------------LDPNR 258
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL T D + + YDR EEHYNLISALHKS+RG+D DA +YW ARMLEGGE P
Sbjct: 259 AL-TPKDLAALLSRRAVLYDRDREEHYNLISALHKSLRGSDPDAGLYWFARMLEGGEDPR 317
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG ADP AL AV+ +Q LG PE + LAQ V +LA APKS ++
Sbjct: 318 YIARRLTRFAAEDVGQADPNALPMAVAAWQTYERLGSPEGELALAQVVVHLATAPKSNAV 377
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A AA+K+ RE+ P H+ NAPT LMK+IGYGKGY Y D D + Q++ P
Sbjct: 378 YMAYKAARKLARETGSLMP--PSHILNAPTALMKDIGYGKGYEYDHDSEDAFSGQNYFPE 435
Query: 541 SLE 543
+E
Sbjct: 436 GME 438
>gi|288929609|ref|ZP_06423453.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
gi|288329114|gb|EFC67701.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
Length = 425
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 197/434 (45%), Positives = 260/434 (59%), Gaps = 46/434 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++D VGQ HL+ PN++LR+ + R+PS I WGPPG GKTTLA+ + +
Sbjct: 4 PLAERMRPRSLDDYVGQKHLVGPNAVLRNMIEGGRIPSFILWGPPGVGKTTLAQIVAKKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L L D+E L++RA+
Sbjct: 122 KGIVTLIGATTENPSFEVIRPLLSRCQLYVLQSLSKEDLEELIQRALH------------ 169
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V + IE L GDAR LN LE+ E
Sbjct: 170 TDVVLQQRNIEVKESTALIRYSGGDARKLLNILELVV-----------------EASPAN 212
Query: 358 CSPYVALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
SP V +DD + Q LAYD+ GE HY+++SA KS+RG+D DAA+YW+ARM+
Sbjct: 213 ASP----VLIDDETVVKCLQQNPLAYDKDGEMHYDIVSAFIKSIRGSDPDAALYWMARMI 268
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGE P +IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA
Sbjct: 269 EGGEDPQFIARRLVISAAEDIGLANPNALLIANAAFDAVMKIGWPEGRIPLAEAAVYLAT 328
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--A 533
+ KS S Y+ + AA + R S G N VPLHLRNAPT+LMK++GYG GY Y D A
Sbjct: 329 SAKSNSAYQGINAALETAR-STG-NLPVPLHLRNAPTRLMKQLGYGGGYKYAHDYEGHFA 386
Query: 534 KQSFLPPSLEGYKF 547
+Q +LP L+ +F
Sbjct: 387 QQQYLPDELQDARF 400
>gi|374384354|ref|ZP_09641878.1| hypothetical protein HMPREF9449_00264 [Odoribacter laneus YIT
12061]
gi|373228633|gb|EHP50937.1| hypothetical protein HMPREF9449_00264 [Odoribacter laneus YIT
12061]
Length = 424
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/439 (43%), Positives = 267/439 (60%), Gaps = 35/439 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ERMRP ++D +GQ HL+ +LR + S + S I WGPPG GKTTLA I
Sbjct: 3 NKPLAERMRPKTLDDYIGQKHLVGEGKVLRKMIESGVVSSFILWGPPGVGKTTLAMIIAE 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSAV+SGVKDVR+ ++ A R + +LF+DE+HRF+K+QQDS L
Sbjct: 63 QL--ERPFYVLSAVSSGVKDVREVIQKAESQRFFNTPNPILFIDEIHRFSKAQQDSLLAA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G++ IGATTENPSF +I+PLLSRC+V L + D+E L+ +A L+K
Sbjct: 121 VEKGTVTLIGATTENPSFEVISPLLSRCQVYVLKAQEKADLEELIDKA-------LTKDF 173
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ E L S GDAR LN LE+ + A P+
Sbjct: 174 YLKEKNILVKEKEALISFSGGDARKLLNILEL-VVNAQTGDPI----------------- 215
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+V + ++ Q L YD+ GE+HY++ISA+ KS+RG+D +AA+Y++ARMLEGGE
Sbjct: 216 ---VVDNETVRKELQENPLMYDKDGEQHYDIISAMIKSIRGSDPNAALYYMARMLEGGED 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRL+ ASED+GLA+P A+ A +C++A H +GMPE + LA+C+ YLA +PKS
Sbjct: 273 PKFIARRLIISASEDIGLANPNAMLIANACFEAVHKIGMPEARIPLAECLIYLATSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y A+ A +V++++ N VPL+LRNAPTKLMKE+ YGK Y Y D P Q ++
Sbjct: 333 SAYLAINRAMEVVKKTA--NVAVPLYLRNAPTKLMKELNYGKDYKYAHDFPGNFVDQEYM 390
Query: 539 PPSLEGYKFLDWPKSNTTD 557
P L+ L +P++N +
Sbjct: 391 PEELKN-TVLYYPQNNAQE 408
>gi|239607930|gb|EEQ84917.1| AAA family ATPase [Ajellomyces dermatitidis ER-3]
Length = 543
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 258/430 (60%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQ+ L+ P+ +LR + +R+PS+I WG GTGKTT+A+ I
Sbjct: 128 APLAERMRPQTLDDVCGQE-LVGPSGVLRGLIEQDRVPSMILWGGAGTGKTTIARVIAK- 185
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV +++ SG+ + + +A+ S K+T+LF DE+HRF+KSQQD FL +
Sbjct: 186 -MVGSRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPV 244
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I FIGATTENPS + LLSRCR TL L ++ +L RA++ + S S
Sbjct: 245 ESGQITFIGATTENPSSRIQNALLSRCRTFTLAKLTVENIVSILNRALEVEGSNYSPS-- 302
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+ + I++L + DGDAR++LN LE++ + KE
Sbjct: 303 ---PLVDDELIKYLAAFADGDARISLNLLELTMDLSRREGMTKE---------------- 343
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
D K++ K L YDR G++HY+ ISA HKS+RGND DAA+Y+LARM++ GE P
Sbjct: 344 -------DLKKSL-TKTLVYDRVGDQHYDTISAFHKSIRGNDPDAALYYLARMIQSGEDP 395
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+ ASED+GLAD L A S Y A +GMPE + LA LAL+ KS
Sbjct: 396 LYIARRLIVVASEDIGLADNTMLTLATSAYTAVEKIGMPEARINLAHATVALALSKKSTR 455
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR LG A V+ E +P+HLRNAPTKLMKE+GYGK Y Y P+ D Q +LP
Sbjct: 456 AYRGLGNALAVLEEPGMAGLPIPIHLRNAPTKLMKEMGYGKEYKYNPNYVDGKVAQVYLP 515
Query: 540 PSLEGYKFLD 549
L G KFL+
Sbjct: 516 EKLLGKKFLE 525
>gi|409398425|ref|ZP_11249231.1| recombination factor protein RarA [Pseudomonas sp. Chol1]
gi|409117144|gb|EKM93580.1| recombination factor protein RarA [Pseudomonas sp. Chol1]
Length = 441
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 269/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNE-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ ++ + L + DGD R LN LE ++ A +E P +
Sbjct: 185 LHLELPEESFQMLLAAADGDGRRLLNLLENASDLA---------------EEGGSIGPDL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LRDLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGNADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E+ Q VPLHLRNAPT+LMK++GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAENGSQE--VPLHLRNAPTRLMKDLGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
++E ++
Sbjct: 401 EAMEPRRY 408
>gi|399020199|ref|ZP_10722338.1| AAA ATPase [Herbaspirillum sp. CF444]
gi|398095851|gb|EJL86183.1| AAA ATPase [Herbaspirillum sp. CF444]
Length = 431
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 255/424 (60%), Gaps = 36/424 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP + +DV+GQ HLL LR A S S+I WGPPG GKTTLA+ + +S
Sbjct: 4 APLAERLRPHSFDDVIGQQHLLGAGKPLRVAFESGEPHSMILWGPPGVGKTTLARIMADS 63
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +F+ LSAV SGVKD+R+AVE A+ +R S +RT+LFVDEVHRFNKSQQD+FLP +
Sbjct: 64 F--NAEFIALSAVLSGVKDIREAVERAQFIRANSGRRTILFVDEVHRFNKSQQDAFLPHV 121
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G FIGATTENPSF + LLSR V L L D+ L+ RA + +GL
Sbjct: 122 ESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLTEDDLGALIDRACREELDGL----- 176
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +A E L ++ DGD R LN LEI A A + +
Sbjct: 177 ----QFEPEAKEMLIASADGDGRKLLNNLEIVARAAQAK--------------------H 212
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VA+V + E +D+ G+ Y+ ISALHKS+RG+ D A+YWL RML+GG P
Sbjct: 213 VAIVGSEVLAECLGDALRRFDKGGDAFYDQISALHKSVRGSSPDGALYWLTRMLDGGTDP 272
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
Y+ARR+VR A ED+GLADP A+ A LG PE + LAQ V YLA+A KS +
Sbjct: 273 RYLARRIVRMAWEDIGLADPRAMTIANDAAATYERLGSPEGELALAQAVIYLAIAAKSNA 332
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
Y A A+ + + ++ GVP HLRNAPTKLMKE+GYGK Y Y D+P +A +++L
Sbjct: 333 GYMAYNQARAFVAKD--KSRGVPEHLRNAPTKLMKELGYGKLYRYAHDEPEGYAAGETYL 390
Query: 539 PPSL 542
P +
Sbjct: 391 PDGM 394
>gi|126207922|ref|YP_001053147.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126096714|gb|ABN73542.1| hypothetical protein APL_0438 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 446
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 262/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 14 PLPARMRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + S G
Sbjct: 187 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEI--------------SSQGKRLNK 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 ALLA-----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 348 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 406 PELKDTVF 413
>gi|395773563|ref|ZP_10454078.1| recombination factor protein RarA [Streptomyces acidiscabies
84-104]
Length = 451
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/414 (46%), Positives = 248/414 (59%), Gaps = 42/414 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + VVGQ+HLL + + V L S++ WGPPG GKTT+A+ + ++
Sbjct: 29 PLADRLRPRTLGQVVGQEHLLGDEAPIGRMVERQHLVSMVLWGPPGCGKTTIARLLADAA 88
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSA SGV D+R DA + R + + T+LFVDE+HRFN++QQDSFLP +E
Sbjct: 89 GLV--FAPLSATFSGVADLRRVFRDAEQRRAR-GRGTLLFVDEIHRFNRAQQDSFLPYVE 145
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR +V L L + L RA + + G
Sbjct: 146 DGTVVLVGATTENPSFELNGALLSRSQVFVLKRLDEQALRTLTARA---------EELTG 196
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALN-ALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R+ + +A + L + DGD R LN A ++ A+ G P
Sbjct: 197 RRLPLTDEARQALLALADGDGRYLLNMAEQLQALPT-------------------GTGP- 236
Query: 362 VALVTLDDAKEAFQCKHLA--YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
LD A A Q + A YD+A E HYNLISALHKSMRG D DAA+YWLARMLEGGE
Sbjct: 237 -----LDVAGLARQVQQRAPLYDKAQEGHYNLISALHKSMRGCDPDAALYWLARMLEGGE 291
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL+IARRLVRFA EDVG+ADP A+ Q ++ + LG PE + LAQ V YLA APKS
Sbjct: 292 DPLFIARRLVRFAGEDVGMADPSAVQQTLAAWDVYERLGSPEGELALAQAVVYLATAPKS 351
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
+++YR GAA K R + P H+ NAPT+LMK +GYGKGY Y PD P
Sbjct: 352 VAVYRGFGAATKSARRTGSLMP--PPHILNAPTRLMKNLGYGKGYQYDPDSPDG 403
>gi|389796598|ref|ZP_10199649.1| recombination factor protein RarA [Rhodanobacter sp. 116-2]
gi|388448123|gb|EIM04108.1| recombination factor protein RarA [Rhodanobacter sp. 116-2]
Length = 451
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 261/432 (60%), Gaps = 39/432 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++++VGQ L+ P+ LR A+ + ++ S++ WGPPG GKTTLA +
Sbjct: 27 PLAERMRPRSLDEIVGQQRLVGPDKALRRALEAGKIHSMVLWGPPGCGKTTLALLVARYA 86
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ +SAV SG+ DVR A+ +A +L ++RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 87 DADFR--AISAVLSGLPDVRKALAEA-ELNFAQDRRTVLFVDEVHRFNKTQQDAFLPHIE 143
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+FIGATTENPSF L + LLSRCRV L P+ D+ LKRA+ D GL G
Sbjct: 144 RGVIIFIGATTENPSFELNSALLSRCRVHVLEPVSTDDIIAALKRALIDSERGL----GE 199
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++V +A++ + DGD R AL LEI+A AA DG
Sbjct: 200 LQLQVGDEALDSIAQAADGDVRRALTLLEIAAELAA-----------------DG----- 237
Query: 363 ALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+D+A + + +D+ GE+ Y+ ISALHKS+R +D DAA+YWL RML+GG
Sbjct: 238 ---RIDEATLAQVLADRTRRFDKQGEQFYDQISALHKSVRSSDPDAAVYWLCRMLDGGVD 294
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+ R A EDVGLA+P A A+ + LG PE + LAQ +LA++PKS
Sbjct: 295 PLYLARRMTRMAVEDVGLAEPRAWRMALDAWDTYERLGSPEGELGLAQLAIWLAISPKSN 354
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSF 537
+ Y A A+ +R G VP+HLRNAPTKLMK +GYGKGY Y D Q
Sbjct: 355 AAYLAYNKARDAVRS--GGTLEVPMHLRNAPTKLMKGLGYGKGYQYDHDAEGGIALDQQC 412
Query: 538 LPPSLEGYKFLD 549
LP L G F +
Sbjct: 413 LPDELAGSVFYE 424
>gi|431799881|ref|YP_007226785.1| AAA ATPase [Echinicola vietnamensis DSM 17526]
gi|430790646|gb|AGA80775.1| AAA ATPase [Echinicola vietnamensis DSM 17526]
Length = 420
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/440 (44%), Positives = 265/440 (60%), Gaps = 46/440 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + +++GQ+HL + L A+ S +PS+I WGPPG GKTT+A I N V
Sbjct: 5 PLAERMRPAKLEELIGQEHLSKEGTFLHRAIRSGTVPSLILWGPPGVGKTTIANIIANEV 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA++SGVKD+R +E AR + VLF+DE+HRFNKSQQD+ L +E
Sbjct: 65 KAP--FYTLSAISSGVKDIRQVIEKAR-----FQQGVVLFIDEIHRFNKSQQDALLGAVE 117
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF + LLSRC+V TLN L+ +E ++ +A++ + L KS
Sbjct: 118 KGHIRLIGATTENPSFEVNAALLSRCQVFTLNHLEKESLEAMVHQAME--KDPLIKS--- 172
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ E L GD R LN EI + A P+
Sbjct: 173 KPIELKE--TEALLRLSGGDGRKLLNLFEI-VVNAIPDDPI------------------- 210
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D E Q K YD++GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 211 -VITNDKVTEIAQQKVAMYDKSGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGEDVK 269
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+G A+P AL A C+ A +G PE +IL+QCV YLA + KS +
Sbjct: 270 FIARRLVILASEDIGNANPNALLLATQCFDAVKIIGYPEARIILSQCVTYLASSAKSNAS 329
Query: 483 YRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSF 537
Y A+ AQ ++R+ EG VP+HLRNAPTKLMK++ YGKGY Y D P + ++ F
Sbjct: 330 YVAINEAQAIVRQ-----EGDLPVPIHLRNAPTKLMKDLNYGKGYKYAHDYPGSFVEEEF 384
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
+P L+G K + P +N +
Sbjct: 385 MPDKLKGKKLYE-PGANARE 403
>gi|440638762|gb|ELR08681.1| hypothetical protein GMDG_03367 [Geomyces destructans 20631-21]
Length = 533
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 265/432 (61%), Gaps = 37/432 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQ+ L+ P +LR+ + +R+PS+I WG GTGKTT+A+ I +
Sbjct: 120 APLAERMRPRTLDDVCGQE-LVGPKGILRNLIEQDRVPSMILWGGAGTGKTTIARCIAS- 177
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV +++ +SGV + + +AR + ++T++F DE+HRF+KSQQD FL +
Sbjct: 178 -MVGSRFVEINSTSSGVGECKKIFAEARGELGLTGRKTIIFCDEIHRFSKSQQDVFLGPV 236
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF + LLSRCR TL L + ++L+RA+ ++ V
Sbjct: 237 ESGQITLIGATTENPSFKVQNALLSRCRTFTLQKLTDEHIRLILERAL------TTEGVL 290
Query: 302 GTRVE--VNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
T+ V+ + I +L + DGDAR ALN LE+SA + + D
Sbjct: 291 DTKPSELVDSELIAYLAAFSDGDARTALNLLELSASIS---------------NRPD--- 332
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
T +D K A K L YDRAG++HY+ ISALHKS+RG+D AA+Y+LARML+ GE
Sbjct: 333 -----TTKEDIKTAL-TKTLVYDRAGDQHYDTISALHKSIRGSDPTAALYYLARMLQSGE 386
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL+IARRLV ASEDVGLAD L+ A + Y A +GMPEC + L C L+LAPKS
Sbjct: 387 DPLFIARRLVVVASEDVGLADNSMLSLATATYTAVEKIGMPECRIALGHCTVALSLAPKS 446
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
YR+L A + E + +P+HLRNAPTKLMKE+GYG Y Y P+ D KQ +
Sbjct: 447 TRSYRSLNNAYAALGEPGVASLPIPVHLRNAPTKLMKELGYGAEYKYNPNYKDGRVKQEY 506
Query: 538 LPPSLEGYKFLD 549
+P +L F++
Sbjct: 507 MPDALRNRVFME 518
>gi|448519594|ref|XP_003868111.1| DNA-dependent ATPase [Candida orthopsilosis Co 90-125]
gi|380352450|emb|CCG22676.1| DNA-dependent ATPase [Candida orthopsilosis]
Length = 664
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 190/433 (43%), Positives = 260/433 (60%), Gaps = 20/433 (4%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP +ND +GQ+ LL + LR+ + S+ +PS I WGPPG GKTTL + I S
Sbjct: 129 PLAHRLRPKTLNDFIGQERLLGEGAPLRNIIKSDLIPSFILWGPPGCGKTTLGRIIAKST 188
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S KFV LS SG KD++ A + + +RT+LF+DE+HR+NK+ QD LPV+E
Sbjct: 189 --SCKFVELSGAGSGAKDLKQVFVQAENHKKLTQQRTILFIDEIHRYNKAVQDLLLPVVE 246
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IGATTENPSF L LLSR + + P + +L RA+ +VN
Sbjct: 247 RGVCTVIGATTENPSFSLNNALLSRIQTFVMEAFSPEAIVKILNRALFEVNRTRKLLYYL 306
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + +D+ E++ C GD+R ALN LE ++A +A R E SDG
Sbjct: 307 PYMTLENDSFEYIAGLCMGDSRAALNVLETVNAYLSADRF---------DEKPSDGA--- 354
Query: 362 VALVTLDDAKEAFQCK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ VT+DD K + + H YD+ G+ HY++ISA HKS+RG+DADAA+++L +ML GGE
Sbjct: 355 IVNVTVDDLKRILKSRNFHQMYDKDGDAHYDIISAFHKSIRGSDADAAMFYLVKMLSGGE 414
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL+I RR+ ASED+GL D L VS QA F+GMPE +ILA C LA APKS
Sbjct: 415 DPLFILRRMTVIASEDIGLRDSSCLPFIVSAKQAFEFVGMPEGEIILAHCTTKLARAPKS 474
Query: 480 ISIYRALGAAQKVIRESVG-QNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQS 536
YRAL +AQK+I E VP+HLRNAPT+LMK++G+G Y Y P ++ KQS
Sbjct: 475 TKSYRALRSAQKLINERPEVLRLPVPIHLRNAPTRLMKDMGFGVEYKYNPNYENGVVKQS 534
Query: 537 FLPPSLEGYKFLD 549
+ P ++ FL+
Sbjct: 535 YFPDDMDHVTFLE 547
>gi|383310639|ref|YP_005363449.1| replication-associated recombination protein A [Pasteurella
multocida subsp. multocida str. HN06]
gi|380871911|gb|AFF24278.1| replication-associated recombination protein A [Pasteurella
multocida subsp. multocida str. HN06]
Length = 445
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/428 (43%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +EFL +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLEFLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|421618076|ref|ZP_16059057.1| recombination factor protein RarA [Pseudomonas stutzeri KOS6]
gi|409780071|gb|EKN59716.1| recombination factor protein RarA [Pseudomonas stutzeri KOS6]
Length = 441
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 269/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALNE-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+E+ ++ + L + DGD R LN LE ++ A +E S +
Sbjct: 185 LRLELPEESFQMLLAAADGDGRRLLNLLENASDLA---------------EEGGSISTDL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQDLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGNADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E+ Q VPLHLRNAPTKLMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAENGSQE--VPLHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
+++ ++
Sbjct: 401 EAMQPRRY 408
>gi|345880431|ref|ZP_08831984.1| hypothetical protein HMPREF9431_00648 [Prevotella oulorum F0390]
gi|343923493|gb|EGV34182.1| hypothetical protein HMPREF9431_00648 [Prevotella oulorum F0390]
Length = 423
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 260/432 (60%), Gaps = 45/432 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D VGQ HL+ +++LR + + + S I WGPPG GKTT+A+ + N +
Sbjct: 4 PLAERMRPRTLDDYVGQQHLIGRDAVLRKMIEAKHISSFILWGPPGVGKTTIAQIVANKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVK+VR+ ++ A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKEVREVIDKAKNNRFFNTTSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L L D+ +L KRA++
Sbjct: 122 RGVVTLIGATTENPSFEVIRPLLSRCQLYVLKALTKDDLLLLAKRAIN------------ 169
Query: 303 TRVEVNHDAI-----EFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T VE+ I E L GDAR LN LE+ V EV +D
Sbjct: 170 TDVELRKKHIVLQETEALLRYSGGDARKLLNILEL-------------VVEVSGKD---- 212
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
+VT +E Q +AYD+ GE HY++ISA KS+RG+D DAA+YWLARM+EG
Sbjct: 213 -----VVVTNALVEERLQTNPMAYDKEGELHYDIISAFIKSIRGSDPDAALYWLARMIEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRL+ A+ED+GLA+P AL A + + A +G PE +IL++ YLA +
Sbjct: 268 GESPQFIARRLMISAAEDIGLANPNALLLANTAFDAVMKIGWPEARIILSEVTTYLATSA 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQ 535
KS S Y A+ AA +RE+ N VPLHLRNAPTKLM E+GY GY Y D P S Q
Sbjct: 328 KSNSAYLAIDAALAKVRET--GNLPVPLHLRNAPTKLMAELGYHDGYAYPHDYPDNSTPQ 385
Query: 536 SFLPPSLEGYKF 547
++P +L+G +
Sbjct: 386 QYMPEALQGTRL 397
>gi|327405355|ref|YP_004346193.1| AAA ATPase central domain-containing protein [Fluviicola taffensis
DSM 16823]
gi|327320863|gb|AEA45355.1| AAA ATPase central domain protein [Fluviicola taffensis DSM 16823]
Length = 424
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 257/428 (60%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ +GQ HLL N L+ A+ S LPSIIFWGPPG GKTTLA + +
Sbjct: 4 PLAERMRPNELSEYIGQRHLLEENGALKKAIESKILPSIIFWGPPGVGKTTLANLLAKQL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSA++SGVKD+R+ ++ A + VLF+DE+HRF+KSQQDS L +E
Sbjct: 64 --NRPFYTLSAISSGVKDIREIIQKAESQGMFQTSGAVLFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF +I+ LLSRC+V TL + H +E LL+ +N + + +
Sbjct: 122 KGTITLIGATTENPSFEVISALLSRCQVYTL---ESHTLEDLLEL----INRAIKQDILL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + GDAR LN LE+ T SP
Sbjct: 175 SKRKIELREYKSLIAVAGGDARKMLNLLELVVNT---------------------FSPSE 213
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ D+ + + YD+ GE+HY++ISA KS+RG+D D A+YWLARM+EGGE P
Sbjct: 214 TAIITDELVNQLAQQRVRYDKDGEQHYDIISAFIKSIRGSDPDGAVYWLARMIEGGEDPK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRL+ A+EDVGLA+P AL A + +QA +G PE +IL+QC YLA +PK +
Sbjct: 274 FIARRLLISAAEDVGLANPTALIMANNTFQAIQVIGWPEARIILSQCAIYLATSPKGNAA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++ N VPLHLRNAPTKLMK++GYG Y Y D P Q +LP
Sbjct: 334 YIAIDEAISTVKQD--PNAPVPLHLRNAPTKLMKDLGYGAEYQYAHDFPGNFVFQQYLPD 391
Query: 541 SLEGYKFL 548
SL+ F
Sbjct: 392 SLKNRTFF 399
>gi|297584737|ref|YP_003700517.1| AAA ATPase central domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297143194|gb|ADH99951.1| AAA ATPase central domain protein [Bacillus selenitireducens MLS10]
Length = 443
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 272/442 (61%), Gaps = 31/442 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+ RMRPV ++++ GQ H++ +LLR A+ ++RL +IF GPPGTGKTTLAK I
Sbjct: 13 PKGPLAARMRPVTLDEIFGQTHIIGEGTLLRRAIEADRLSPMIFHGPPGTGKTTLAKVIA 72
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
N+ A + F L+AVT+G+KDVR+ V A+ +KRTVLF+DE+HRFNK QQD+ LP
Sbjct: 73 NTTAAA--FEQLNAVTAGIKDVREMVSQAKSRLDYDHKRTVLFIDEIHRFNKGQQDALLP 130
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+EDG+++ IGATTENP F + L+SR R+ L L D+ +L+ A++D G
Sbjct: 131 HVEDGTVILIGATTENPMFEVNPALISRSRLFRLELLSDGDMRKVLEHALNDAKRGF--- 187
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G +V + +A + GDAR ALNALE++ +T +D
Sbjct: 188 -GDYQVSFSEEAFNHIIDVAGGDARTALNALELAVLT------------------TDADE 228
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V + L+ A+ + Q + + YD+ G+ HY+ +SA KS+RG+D DA +YWLA+M+ GE
Sbjct: 229 NEVIRIDLETAEASIQRRMIRYDKKGDNHYDTVSAFIKSIRGSDPDATLYWLAKMIYAGE 288
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+P +IARR+ A+EDVGLADP AL A + + A FLGMPE + LA+ YLA APKS
Sbjct: 289 EPRFIARRIYVHAAEDVGLADPNALLVAQAAFDAVEFLGMPEARIPLAEAALYLATAPKS 348
Query: 480 ISIYRALGAA-QKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQS 536
++ + + AA + V +E G+ VP+HLR+A K ++G+G+GY+Y + Q
Sbjct: 349 NAVIKGIDAALETVQKERPGE---VPVHLRDAHYKGASKLGHGEGYLYPHHYNHHYVVQQ 405
Query: 537 FLPPSLEGYKFLDWPKSNTTDK 558
+LP SL+ +F + P N +K
Sbjct: 406 YLPDSLKDKRFYE-PSVNGYEK 426
>gi|455738676|ref|YP_007504942.1| hypothetical protein MU9_1523 [Morganella morganii subsp. morganii
KT]
gi|455420239|gb|AGG30569.1| hypothetical protein MU9_1523 [Morganella morganii subsp. morganii
KT]
Length = 447
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 265/430 (61%), Gaps = 30/430 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP + +GQ HLL+ L A+ + +L S+I WGPPGTGKTTLA+ I +
Sbjct: 13 YQPLAARMRPGTLEQYIGQTHLLAEGKPLPRAIRAGQLHSMILWGPPGTGKTTLAEVIGH 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ LSAVTSGVK++R+A+E AR+ R +RT+LFVDEVHRFNKSQQD+FLP
Sbjct: 73 YADADIE--RLSAVTSGVKEIREAIERARQNR-NLGRRTILFVDEVHRFNKSQQDAFLPH 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDG++ FIGATTENPSF L + LLSR RV L L P D+E +L +A++D GL
Sbjct: 130 IEDGTVTFIGATTENPSFELNSALLSRARVYLLKSLSPEDIEAVLIQALNDSERGL---- 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG + + + + L GDAR +LN LE+ A A E +DG
Sbjct: 186 GGQNIVLPDETRKLLAELVAGDARRSLNVLEMMADMA--------------ETGADGKR- 230
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T + KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G
Sbjct: 231 ---VLTTELLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGD 287
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS
Sbjct: 288 PLYVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSN 347
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + +E G++ VP HLRNAPTKLMKE+G GK Y Y D+ +A + +
Sbjct: 348 AVYTAFKAAMRDAKE--GRDYDVPEHLRNAPTKLMKEMGLGKEYRYAHDETNAYAAGEVY 405
Query: 538 LPPSLEGYKF 547
PP + ++
Sbjct: 406 FPPEMRDTRY 415
>gi|285018238|ref|YP_003375949.1| ATPase [Xanthomonas albilineans GPE PC73]
gi|283473456|emb|CBA15961.1| putative atpase protein [Xanthomonas albilineans GPE PC73]
Length = 457
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/407 (46%), Positives = 251/407 (61%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + ++VGQ LL+P+S LR AV + R+ S+I WGPPG GKTTLA +
Sbjct: 24 PLAERMRPQTLEEMVGQKRLLTPSSALRRAVTAGRVHSMILWGPPGCGKTTLALLLAQYA 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+K +SAV SG+ DVR + +A + R +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 84 DAEFK--AISAVLSGLPDVRLVLAEAAQ-RFADGRRTVLFVDEVHRFNKAQQDAFLPHIE 140
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D GL G
Sbjct: 141 RGNILFVGATTENPSFELNSALLSRCRVHVLEAVSPQDIVEALQRALHDAERGL----GA 196
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++V+ A+ + S DGD R AL LEI+A E+ Q++ + + +
Sbjct: 197 EQIQVSDAALLEIASAADGDVRRALTLLEIAA-------------ELAQDEGGEITAQTL 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V D + +D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P
Sbjct: 244 QQVLADRTRR--------FDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPA 295
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YLA KS +
Sbjct: 296 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAG 355
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A+ +RES Q VPLHLRNAPTKLMK +GYG Y Y D
Sbjct: 356 YAAFNQAKAEVRESGTQE--VPLHLRNAPTKLMKHLGYGAEYQYDHD 400
>gi|91789641|ref|YP_550593.1| recombination factor protein RarA [Polaromonas sp. JS666]
gi|91698866|gb|ABE45695.1| Recombination protein MgsA [Polaromonas sp. JS666]
Length = 427
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 201/438 (45%), Positives = 262/438 (59%), Gaps = 47/438 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ER+RP ++ +V+GQ HLL LR A S + S I WGPPG GKTTLA+ + +
Sbjct: 2 QAPLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTLARLMAS 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S F+ +SAV GVKD+R+AVE A + + +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 62 SF--DAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPH 119
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G FIGATTENPSF + + LLSR V L PL VE LKR V V L +
Sbjct: 120 VESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPL----VEADLKRIVVKV---LEERA 172
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ A++ L + DGDAR LN LE + A S
Sbjct: 173 LPAIESIADAAVDRLVAYADGDARRLLNTLESLGVAAR--------------------SE 212
Query: 361 YVALVTLDDAKEAFQCKHLA-----YDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+ +VT +A+ K L YD+ GE+ Y+ ISALHKS+RG+D DAA+YW RML
Sbjct: 213 KITVVT-----DAWLLKVLGERLRRYDKGGEQFYDTISALHKSVRGSDPDAALYWFMRML 267
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
+GG +P Y+ARRL+R ASED+GLADP AL A+ + LG PE + LAQCV YLA+
Sbjct: 268 DGGAEPRYMARRLIRMASEDIGLADPRALRLALDAAEVYERLGSPEGELALAQCVIYLAV 327
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---S 532
APKS ++Y+A A+ IR+ VPLHLRNAPT+LMKE+ YGK Y Y D+ +
Sbjct: 328 APKSNAVYKAFNEAKAFIRKD--GTRPVPLHLRNAPTRLMKELDYGKDYRYAHDEEDGFA 385
Query: 533 AKQSFLPPSLEGYKFLDW 550
A +++ P EG + DW
Sbjct: 386 AGENYFP---EGLRAPDW 400
>gi|397687469|ref|YP_006524788.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 10701]
gi|395809025|gb|AFN78430.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 10701]
Length = 441
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 271/428 (63%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAQ-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + +RT+LFVDEVHRFNK+QQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIARQQAAQYGRRTILFVDEVHRFNKTQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVERALSE-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ + L + DGD R LN LE ++ A +E E+ E D
Sbjct: 185 LHLRLPEESFQMLVAAADGDGRRLLNLLENASDLA------EEGGEISVELLQD------ 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 233 ---LLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G ADP A+ +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGNADPRAVGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ + E+ Q VPLHLRNAPT+LMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAKRDVAENGSQE--VPLHLRNAPTRLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
++E ++
Sbjct: 401 EAMEPRQY 408
>gi|157375266|ref|YP_001473866.1| recombination factor protein RarA [Shewanella sediminis HAW-EB3]
gi|157317640|gb|ABV36738.1| AAA ATPase, central domain protein [Shewanella sediminis HAW-EB3]
Length = 443
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 273/440 (62%), Gaps = 36/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I+ +GQ HLL LR A+ + R S++FWGPPGTGKTTLA+ + N
Sbjct: 14 PLAARMRPETISQYIGQTHLLGEGKPLRKALEAGRAHSMMFWGPPGTGKTTLAELVANYA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKEIRTAIEHAKNVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++F+GATTENPSF + LLSR RV + L ++ ++++A+ D GL G
Sbjct: 132 DGTVIFVGATTENPSFEINNALLSRARVYLIKKLTNDEIVHIVRQALTDEERGL-----G 186
Query: 303 TRVEVNHDAIEFLCSNC-DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R + D + +N +GDAR ALN +E+ + A DG S
Sbjct: 187 KRKLLIPDNVALKLANVSEGDARKALNLIELMSDMLA-----------------DGGSFS 229
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++ E + +D+ G++ Y+LISA+HKS+RG+ DAA+YW RMLEGG P
Sbjct: 230 EEMII-----EVAGQQLAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDP 284
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+ ASED+G ADP+A+ A++ ++ H +G E +AQ + YLA APKS S
Sbjct: 285 LYIARRLLAIASEDIGNADPVAMTVALNAWECFHRVGPSEGERAIAQAIVYLASAPKSNS 344
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FL 538
+Y A AA+++ RE+ GQ E VP HLRNAPT+LM+++GYG+GY Y D+P++ S +
Sbjct: 345 VYTAFKAARQLARET-GQ-EAVPEHLRNAPTQLMQDLGYGEGYRYAHDEPNSYASGECYF 402
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L +F +P + +K
Sbjct: 403 PEGLAESRFY-YPTEHGFEK 421
>gi|419955922|ref|ZP_14472041.1| recombination factor protein RarA [Pseudomonas stutzeri TS44]
gi|387967266|gb|EIK51572.1| recombination factor protein RarA [Pseudomonas stutzeri TS44]
Length = 441
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 268/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIARQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALSE-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ ++ + L + DGD R LN LE ++ A ++ S +
Sbjct: 185 LHLELPEESFQMLLAAADGDGRRLLNLLENASDLA---------------EQGGTISTDL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 230 LQNLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGNADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E+ Q VPLHLRNAPT+LMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAENGSQE--VPLHLRNAPTRLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
++E ++
Sbjct: 401 EAMEPRRY 408
>gi|433676379|ref|ZP_20508497.1| putative ATPase [Xanthomonas translucens pv. translucens DSM 18974]
gi|430818517|emb|CCP38788.1| putative ATPase [Xanthomonas translucens pv. translucens DSM 18974]
Length = 455
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/407 (47%), Positives = 252/407 (61%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQ LL+P S LR AV S R+ S+I WGPPG GKTTLA + +
Sbjct: 23 PLAERMRPCTLDEMVGQKRLLAPASALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYA 82
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+K +SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 83 EAEFK--AISAVLSGLPEVRLVLAEAAQ-RFADGRRTVLFVDEVHRFNKAQQDAFLPHIE 139
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+F+GATTENPSF L + LLSRCRV L P+ P D+ L+RA+ D GL GG
Sbjct: 140 RGTILFVGATTENPSFELNSALLSRCRVHVLEPVSPQDIVEALQRALHDSERGL----GG 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V+ A+ + S DGD R AL LEI+A E+ Q ++ + + +
Sbjct: 196 EAIRVSDTALLEIASAADGDVRRALTLLEIAA-------------ELAQGEDGEITAQTL 242
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V D + +D+ GE+ Y+ ISALHKS+R ++ DA++YWL RML+GG P
Sbjct: 243 LQVLADRTRR--------FDKGGEQFYDQISALHKSVRSSNPDASLYWLTRMLDGGCDPS 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A A+ + LG PE + AQ V YLA KS +
Sbjct: 295 YLARRLTRMAIEDIGLADPRAQQMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAG 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A+ +RES Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 355 YAAFNQAKAEVRESGTQE--VPLHLRNAPTKLMKNLGYGEHYQYDHD 399
>gi|423136170|ref|ZP_17123815.1| hypothetical protein HMPREF9715_03590 [Myroides odoratimimus CIP
101113]
gi|423329938|ref|ZP_17307744.1| hypothetical protein HMPREF9711_03318 [Myroides odoratimimus CCUG
3837]
gi|371639375|gb|EHO04993.1| hypothetical protein HMPREF9715_03590 [Myroides odoratimimus CIP
101113]
gi|404602846|gb|EKB02533.1| hypothetical protein HMPREF9711_03318 [Myroides odoratimimus CCUG
3837]
Length = 433
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/431 (42%), Positives = 265/431 (61%), Gaps = 35/431 (8%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
+ + APL+ER+RP ++D V Q+HL+ N +L + + +PS+IFWGPPGTGKTTLA+
Sbjct: 6 ITIMEAPLAERVRPHTLSDYVSQEHLVGENGILTNQLKVGFIPSLIFWGPPGTGKTTLAE 65
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQD 235
I F LSA+ SGVKD+R+ +E A+ + + + +LF+DE+HRF+KSQQD
Sbjct: 66 IIAKES--ERPFYVLSAINSGVKDIREVIEKAKSNSGLFTARNPILFIDEIHRFSKSQQD 123
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
S L +E G + IGATTENPSF +I LLSRC+V TLN D++ LL+RA
Sbjct: 124 SLLAAVERGWVTLIGATTENPSFEVIPALLSRCQVYTLNAFTKEDLQHLLERA------- 176
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
++K + + ++ E L GD R LN E+ + E+E
Sbjct: 177 MNKDLFLKKKKITLTETEALFRISGGDGRKLLNTFELI-------INATHDNEIE----- 224
Query: 356 DGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+T + + Q + YD+ GE+HY+++SA KS+RG+D + A+YWLARM+
Sbjct: 225 ---------ITNERVMQVVQKNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMI 275
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGE +IARRL+ ASED+G A+P AL A + +QA +G PE ++L+QC YLA
Sbjct: 276 EGGEDVKFIARRLLIAASEDIGNANPTALIMANNTFQAVSVIGYPESRILLSQCAIYLAT 335
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSA 533
+PKS S Y A+G AQ++++++ + VP+HLRNAPTKLMKE+GYGK Y+Y+ D +
Sbjct: 336 SPKSNSTYLAIGKAQQLVKQT--GDLSVPIHLRNAPTKLMKELGYGKEYLYSHDYTNNFV 393
Query: 534 KQSFLPPSLEG 544
+Q FLP LEG
Sbjct: 394 EQEFLPDELEG 404
>gi|336311287|ref|ZP_08566251.1| ATPase, AAA family [Shewanella sp. HN-41]
gi|335865090|gb|EGM70140.1| ATPase, AAA family [Shewanella sp. HN-41]
Length = 443
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 264/428 (61%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +I + +GQ HLL LR A+ + R S++ WGPPGTGKTTLA+ I +
Sbjct: 14 PLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAHYS 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVKD+R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKDIRAAIEQAKAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ ++ +A+ D GL G
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALTDTERGL----GQ 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + D ++ L CDGDAR ALN LE+ + A DG S
Sbjct: 188 RQLVMPSDVLKKLAQLCDGDARKALNLLELMSDMVA-----------------DGGS--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
T + + + +D+ G++ Y+LISA+HKS+RG+ DAA+YW R+LEGG PL
Sbjct: 228 --FTTEMLVQVAGHQVAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + H +G E +AQ + YLA APKS ++
Sbjct: 286 YVARRLLAIASEDVGNADPAAMTIALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+ + E+ GQ E VP HLRNAPTKLM E+G+G Y Y D+P+A S + P
Sbjct: 346 YTAFKAARALASET-GQ-EAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFP 403
Query: 540 PSLEGYKF 547
SL+ +F
Sbjct: 404 ESLKESRF 411
>gi|237712129|ref|ZP_04542610.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA]
gi|229453450|gb|EEO59171.1| recombination factor protein RarA [Bacteroides sp. 9_1_42FAA]
Length = 425
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/438 (43%), Positives = 261/438 (59%), Gaps = 36/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 4 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E AR R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L L+ D+ LL +N ++K V
Sbjct: 122 TGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKGDLLELL-------HNAIAKDVIL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + GDAR LN LE+ A PV
Sbjct: 175 KEKKIELKETDAMLRFSGGDARKLLNILELVVEADADAGPV------------------- 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D A+YWLARM+E GE P
Sbjct: 216 -VITDEKVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGALYWLARMVEAGEDPA 274
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 275 FIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSA 334
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPP 540
Y + +A +++R++ N VPLHLRNAPTKLMK++GYGK Y Y +Q FLP
Sbjct: 335 YEGINSALELVRQT--GNLPVPLHLRNAPTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPD 392
Query: 541 SLEGYKFLDW-PKSNTTD 557
++ + W P++N +
Sbjct: 393 EVKDSRI--WHPQNNAQE 408
>gi|307251991|ref|ZP_07533892.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860683|gb|EFM92695.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 443
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 11 PLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 71 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 127
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 128 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 184 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNK-------------- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 230 ALLA-----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 285 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 345 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 402
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 403 PELKDTVF 410
>gi|398394551|ref|XP_003850734.1| hypothetical protein MYCGRDRAFT_74087 [Zymoseptoria tritici IPO323]
gi|339470613|gb|EGP85710.1| hypothetical protein MYCGRDRAFT_74087 [Zymoseptoria tritici IPO323]
Length = 572
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 260/430 (60%), Gaps = 33/430 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
HAPL+ERMRP +++V GQD L+ N +LR+ + ++R+PS+I WG PGTGKTT+A+ I
Sbjct: 135 HAPLAERMRPQTLDEVAGQD-LVGANGVLRNLIVTDRVPSMILWGGPGTGKTTIARLIAQ 193
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +FV +++ +SGV + + +A+ + ++T++F DE+HRF+KSQQD FL
Sbjct: 194 TAGT--RFVEINSTSSGVAECKKLFSEAKNELGLTGRKTIIFCDEIHRFSKSQQDVFLGP 251
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF + LLSRCR TL L + +LKRA+ GL
Sbjct: 252 VEAGQVTLIGATTENPSFKVANALLSRCRTFTLAKLTDDGIFDILKRALIREVPGLPTPS 311
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
N+ + +L + DGDAR LN + + P
Sbjct: 312 SND----NYSLVRYLAAFADGDARTGLNL--LELALDLCKRPG----------------- 348
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT++D K++ + L YDRAG++HY+ ISA HKS+RG++ADAA+Y+LARML+ GE
Sbjct: 349 ----VTMNDIKQSL-TQTLVYDRAGDQHYDTISAFHKSIRGSNADAALYYLARMLQSGED 403
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+IARR+V ASE++G AD L+ A + Y A +GMPEC + LA C L+ APKS+
Sbjct: 404 PLFIARRMVVMASEEIGTADNTILSLATATYTAAERIGMPECRINLAHCAVALSSAPKSV 463
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
YR L AA ++E VP+HLRNAPTKLMKE+GYGK Y Y PD D Q +L
Sbjct: 464 RAYRGLNAAYAALKEPGIAGLPVPVHLRNAPTKLMKELGYGKEYKYNPDYADGRVVQDYL 523
Query: 539 PPSLEGYKFL 548
P LEG FL
Sbjct: 524 PEKLEGRSFL 533
>gi|190149782|ref|YP_001968307.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|189914913|gb|ACE61165.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 446
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 14 PLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 187 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNK-------------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 ALLA-----EVLGERQTRFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 348 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 406 PELKDTVF 413
>gi|166031126|ref|ZP_02233955.1| hypothetical protein DORFOR_00811 [Dorea formicigenerans ATCC
27755]
gi|166028973|gb|EDR47730.1| recombination factor protein RarA [Dorea formicigenerans ATCC
27755]
Length = 439
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/439 (43%), Positives = 274/439 (62%), Gaps = 30/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP + +VVGQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I ++
Sbjct: 16 APLASRLRPTTLEEVVGQQHIIGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIAHT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F ++A +G KD+ + V+ A++ K+T+LFVDE+HRFNK QQD LP +
Sbjct: 76 T--SAEFTQINATVAGKKDMEEVVQKAKETLGMYQKKTILFVDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR + L+PL+ D++ LLKRAV D G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNGALISRSSIFELHPLEKEDIKTLLKRAVYDQEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
E++ +A+EFL GDAR ALNA+E+ +T E +DG
Sbjct: 190 SYHAEIDEEALEFLADIAGGDARNALNAIELGILTT--------------ERSADGK--- 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TLD A E Q + + YD+ G+ HY+ ISA KSMRG+D DAA+Y+LA+ML GE
Sbjct: 233 -IHITLDVASECIQKRVVRYDKTGDNHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDV 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AV+ QA +GMPE +IL+Q V Y+A APKS +
Sbjct: 292 KFIARRIMICASEDVGNADPMALQVAVAAAQAVERIGMPESQIILSQAVTYVATAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
+A+ AA + +R VP HL++A K +++G+G GY Y D P+ +Q ++P
Sbjct: 352 AVKAISAAMENVR---NYKTTVPAHLQDAHYKGSQKLGHGVGYKYAHDYPNHYVEQQYMP 408
Query: 540 PSLEGYKFLDWPKSNTTDK 558
++ KF + P N +K
Sbjct: 409 SEIQKAKFYE-PSDNGHEK 426
>gi|162148061|ref|YP_001602522.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
PAl 5]
gi|209542678|ref|YP_002274907.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786638|emb|CAP56221.1| ATPase, AAA family protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209530355|gb|ACI50292.1| AAA ATPase central domain protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 473
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/419 (46%), Positives = 260/419 (62%), Gaps = 43/419 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP +++DVVGQDHLL P+ LR + L S+I WG PG GKTT+A+ + +
Sbjct: 46 PLADRLRPESLDDVVGQDHLLGPDGALRRMLDRGSLASLILWGGPGVGKTTIARLLAD-- 103
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +FV LSAV SGV D++ A +DAR+L ++ + T+LFVDE+HRFN++QQD FLPV+E
Sbjct: 104 AAGLRFVQLSAVFSGVADLKRAFDDARRL-GEAGQGTLLFVDEIHRFNRAQQDGFLPVVE 162
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSRC+V+ L L +E LL RA + G
Sbjct: 163 DGTVVLVGATTENPSFALNGALLSRCQVMVLRRLDDPALERLLCRA---------EEATG 213
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D L + DGD R LN +E AVR +Q ++ G S +
Sbjct: 214 RALPLTPDGRATLRAMADGDGRYLLNMVEQ---VLAVRT--------DQPMDAHGLSGLL 262
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A + + YD+ EEHYNLISALHKS+RG+D DAA+YW ARMLEGGE P
Sbjct: 263 A------------RRAVLYDKDREEHYNLISALHKSLRGSDTDAALYWFARMLEGGEDPR 310
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG+ADP AL A++ ++ LG PE + LAQ V +L APKS ++
Sbjct: 311 YIARRLTRFAAEDVGMADPQALPLAIAAWETYERLGSPEGELALAQLVVHLGTAPKSNAV 370
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY------IYTPDDPSAKQ 535
Y A AA+++ + + P H+ NAPT LMK++GYG+GY +Y DP A Q
Sbjct: 371 YTAYKAARRLAKSTGSLMP--PAHILNAPTNLMKDLGYGRGYDSEYADVYADADPGAGQ 427
>gi|424068135|ref|ZP_17805591.1| ATPase AAA [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|440723309|ref|ZP_20903674.1| recombination factor protein RarA [Pseudomonas syringae BRIP34876]
gi|440729058|ref|ZP_20909254.1| recombination factor protein RarA [Pseudomonas syringae BRIP34881]
gi|443643396|ref|ZP_21127246.1| Recombination factor protein RarA [Pseudomonas syringae pv.
syringae B64]
gi|407999099|gb|EKG39487.1| ATPase AAA [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|440359724|gb|ELP97018.1| recombination factor protein RarA [Pseudomonas syringae BRIP34876]
gi|440360008|gb|ELP97294.1| recombination factor protein RarA [Pseudomonas syringae BRIP34881]
gi|443283413|gb|ELS42418.1| Recombination factor protein RarA [Pseudomonas syringae pv.
syringae B64]
Length = 440
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/426 (46%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLAK ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAK-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L S DGD R LN LE ++ A DG V
Sbjct: 185 RQLALSDEGFAMLMSAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 GLLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|327350459|gb|EGE79316.1| AAA family ATPase [Ajellomyces dermatitidis ATCC 18188]
Length = 543
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 257/430 (59%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQ+ L+ P+ +LR + +R+PS+I WG GTGKTT+A+ I
Sbjct: 128 APLAERMRPQTLDDVCGQE-LVGPSGVLRGLIEQDRVPSMILWGGAGTGKTTIARVIAK- 185
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV +++ SG+ + + +A+ S K+T+LF DE+HRF+KSQQD FL +
Sbjct: 186 -MVGSRFVEINSTNSGIAEWKKLFAEAKNELSLSGKKTILFCDEIHRFSKSQQDVFLGPV 244
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I FIGATTENPS + LLSRCR TL L ++ +L RA++ + S S
Sbjct: 245 ESGQITFIGATTENPSSRIQNALLSRCRTFTLAKLTVENIVSILNRALEVEGSNYSPSP- 303
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V+ + I++L + DGDAR +LN LE++ + KE
Sbjct: 304 ----LVDDELIKYLAAFADGDARTSLNLLELTMDLSRREGMTKE---------------- 343
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
D K++ K L YDR G++HY+ ISA HKS+RGND DAA+Y+LARM++ GE P
Sbjct: 344 -------DLKKSL-TKTLVYDRVGDQHYDTISAFHKSIRGNDPDAALYYLARMIQSGEDP 395
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+ ASED+GLAD L A S Y A +GMPE + LA LAL+ KS
Sbjct: 396 LYIARRLIVVASEDIGLADNTMLTLATSAYTAVEKIGMPEARINLAHATVALALSKKSTR 455
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR LG A V+ E +P+HLRNAPTKLMKE+GYGK Y Y P+ D Q +LP
Sbjct: 456 AYRGLGNALAVLEEPGMAGLPIPIHLRNAPTKLMKEMGYGKEYKYNPNYVDGKVAQVYLP 515
Query: 540 PSLEGYKFLD 549
L G KFL+
Sbjct: 516 EKLLGKKFLE 525
>gi|303249802|ref|ZP_07336006.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302651369|gb|EFL81521.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 446
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 14 PLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 187 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNK-------------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 ALLA-----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 348 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 406 PELKDTVF 413
>gi|189199446|ref|XP_001936060.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187983159|gb|EDU48647.1| DNA-dependent ATPase MGS1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 534
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 204/507 (40%), Positives = 284/507 (56%), Gaps = 55/507 (10%)
Query: 50 SFELPVPNPNPNQNPVQPKLDRFF--HFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKT 107
S +LP P Q+ P + H +TK S Q + + S + LK
Sbjct: 53 SRKLPTSTPKNGQSTSSPPVSAVTPPHARTKRSFDQVTDAQRASEPQSPSASKRARTLKA 112
Query: 108 RHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPP 167
D PL+ERMRP+++ V GQ+ L+ P +LR+ V RLPS++ WG P
Sbjct: 113 VQDA----------MPLAERMRPMSLEHVYGQE-LVGPKGILRAMVDEGRLPSMVLWGRP 161
Query: 168 GTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVH 227
GTGKTT+A+ I N+ +FV +++ ++ ++ VR +A + + ++T++F DE+H
Sbjct: 162 GTGKTTIARLIANTSGS--RFVEINSTSTRLEQVRAIFTEASQDLRLTGRKTIVFCDELH 219
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287
RF+K+QQD+FL +E G+I I ATTENPSF +I+ LLSRCR TL+ LK D+ +L+R
Sbjct: 220 RFSKTQQDAFLGPVESGTITLIAATTENPSFKIISALLSRCRTFTLDDLKEDDLVKILER 279
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347
A+ + T ++ + + DGDAR ALN LE++ A
Sbjct: 280 AM--------TAESCTSPILDKPMLAYFARFSDGDARTALNLLELAMSLA---------- 321
Query: 348 EVEQEDESDGCSPYVALVTLDDAKEAFQ---CKHLAYDRAGEEHYNLISALHKSMRGNDA 404
Q D + KE Q K L YDRAG++HY+ ISALHKS+RG+D
Sbjct: 322 --NQPDMT---------------KEKIQQSLTKTLVYDRAGDQHYDSISALHKSIRGSDP 364
Query: 405 DAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464
A++Y+LARMLE GE P YIARRL+ ASEDVGLAD L+ A + Y AC +GMPEC +
Sbjct: 365 HASLYYLARMLESGEDPRYIARRLIVVASEDVGLADNSMLSLATATYAACENIGMPECRI 424
Query: 465 ILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
LA V L LAPKS +YR L A ++E +P H+RNAPTKLMK++GYG GY
Sbjct: 425 NLAHAVTALTLAPKSTRVYRGLKNAIDAVKEPGMAALPIPHHIRNAPTKLMKDMGYGDGY 484
Query: 525 IYTPD--DPSAKQSFLPPSLEGYKFLD 549
Y P+ D KQ +LP +L G FL+
Sbjct: 485 KYNPNYLDGKVKQEYLPEALRGRSFLE 511
>gi|381170023|ref|ZP_09879184.1| magnesium chelatase, subunit ChlI family protein [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|390991312|ref|ZP_10261580.1| magnesium chelatase, subunit ChlI family protein [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|418517480|ref|ZP_13083643.1| recombination factor protein RarA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418521399|ref|ZP_13087443.1| recombination factor protein RarA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|372553964|emb|CCF68555.1| magnesium chelatase, subunit ChlI family protein [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|380689546|emb|CCG35671.1| magnesium chelatase, subunit ChlI family protein [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|410702574|gb|EKQ61077.1| recombination factor protein RarA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410705858|gb|EKQ64325.1| recombination factor protein RarA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 457
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/416 (47%), Positives = 253/416 (60%), Gaps = 33/416 (7%)
Query: 117 LHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
LHV + PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTT
Sbjct: 15 LHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTT 74
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
LA + + +K +SAV SG+ DVR + +A + R +RTVLFVDEVHRFNK+Q
Sbjct: 75 LALLLAHYADAEFK--AISAVLSGLPDVRQVLAEAAQ-RFAGGRRTVLFVDEVHRFNKAQ 131
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAE 191
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
GL G ++V+ ++ + S DGD R AL LEI+A AA
Sbjct: 192 RGL----GAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA--------------G 233
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
E +P L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL R
Sbjct: 234 EGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTR 286
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YL
Sbjct: 287 MLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
A KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 347 ASTAKSNAGYAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQDYQYDHD 400
>gi|395794371|ref|ZP_10473697.1| recombination factor protein RarA [Pseudomonas sp. Ag1]
gi|421143942|ref|ZP_15603867.1| AAA ATPase, central region [Pseudomonas fluorescens BBc6R8]
gi|395341489|gb|EJF73304.1| recombination factor protein RarA [Pseudomonas sp. Ag1]
gi|404504906|gb|EKA18951.1| AAA ATPase, central region [Pseudomonas fluorescens BBc6R8]
Length = 440
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 267/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL+RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLQRALNE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V+ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSVSEEGFKILLTAADGDGRRFLNLLENASDLA-----------------EDGSEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDDLE 404
>gi|258542798|ref|YP_003188231.1| recombination factor protein RarA [Acetobacter pasteurianus IFO
3283-01]
gi|384042719|ref|YP_005481463.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12]
gi|384051236|ref|YP_005478299.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03]
gi|384054344|ref|YP_005487438.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07]
gi|384057578|ref|YP_005490245.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22]
gi|384060219|ref|YP_005499347.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26]
gi|384063511|ref|YP_005484153.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32]
gi|384119521|ref|YP_005502145.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633876|dbj|BAH99851.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01]
gi|256636935|dbj|BAI02904.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03]
gi|256639988|dbj|BAI05950.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07]
gi|256643044|dbj|BAI08999.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22]
gi|256646099|dbj|BAI12047.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26]
gi|256649152|dbj|BAI15093.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32]
gi|256652139|dbj|BAI18073.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655196|dbj|BAI21123.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12]
Length = 453
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 261/440 (59%), Gaps = 49/440 (11%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
P PL++R+RP + DVVGQ +LL P L + L S+I WG PG GKTT+A+ +
Sbjct: 34 APMQPLADRLRPQRLEDVVGQAYLLGPEGALTRMLERGSLASLILWGGPGVGKTTIARLL 93
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
A KFV LSAV SGV D++ A E+AR+ + + T+LFVDE+HRFN++QQD FL
Sbjct: 94 AQ--AAGLKFVQLSAVFSGVADLKKAFENARR-QAEIGGGTLLFVDEIHRFNRAQQDGFL 150
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
PV+EDG++V +GATTENPSF L + LLSRC+V+ LN L E LL RA ++
Sbjct: 151 PVVEDGTVVLVGATTENPSFALNSALLSRCQVMVLNRLDDPACEALLVRAEEET------ 204
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
G + + D L + DGD R LN +E ++ ++ E D
Sbjct: 205 ---GRPLPLTEDGRVTLRAMADGDGRYLLNMVE-------------QLLSLKTEKPLDAQ 248
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
AL L + + YDR EEHYNLISALHKSMRG+D DAA+YW ARMLEGG
Sbjct: 249 ----ALSRL------LAKRAILYDRDREEHYNLISALHKSMRGSDPDAALYWFARMLEGG 298
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P Y+ RR+ RFA+ED+G+ADP AL AV+ ++ LG PE + LAQ V +LA APK
Sbjct: 299 EDPRYLGRRMTRFAAEDIGMADPHALPLAVAAWETYERLGSPEGELALAQLVVHLATAPK 358
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--------- 529
S ++Y+A GAA++ + + P H+ NAPTKLM++IGYGKGY Y D
Sbjct: 359 SNAVYKAYGAARRAAKATGSLMP--PAHILNAPTKLMQDIGYGKGYQYDHDAEEGFSGQN 416
Query: 530 ---DPSAKQSFLPPSLEGYK 546
D +Q+F P+ GY+
Sbjct: 417 YFPDGMKRQNFYNPTGRGYE 436
>gi|307263100|ref|ZP_07544722.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306871726|gb|EFN03448.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 443
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 11 PLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 71 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 127
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 128 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 184 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNK-------------- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 230 ALLA-----EVLGERQTRFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 285 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 345 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 402
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 403 PELKDTVF 410
>gi|307249662|ref|ZP_07531648.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858360|gb|EFM90430.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 446
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 14 PLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 187 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNK-------------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 ALLA-----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 348 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 406 PELKDTVF 413
>gi|104781339|ref|YP_607837.1| recombination factor protein RarA [Pseudomonas entomophila L48]
gi|95110326|emb|CAK15033.1| DNA-dependant ATPase [Pseudomonas entomophila L48]
Length = 441
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 261/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVDRALSE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +A + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDEAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWYARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMGFKAAMREAAEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPEQLE 404
>gi|121998175|ref|YP_001002962.1| recombination factor protein RarA [Halorhodospira halophila SL1]
gi|121589580|gb|ABM62160.1| Recombination protein MgsA [Halorhodospira halophila SL1]
Length = 427
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 204/434 (47%), Positives = 269/434 (61%), Gaps = 35/434 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
P APL+ERMRP +I ++ GQ HLL L +V + R S+I WGPPG+GKTTLA +
Sbjct: 4 APSAPLAERMRPRSIEEMAGQGHLLDTGRALAQSVAAGRPHSMILWGPPGSGKTTLAGLV 63
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
+F+ LSAV +GV+++R A+ +A L ++ +RTVLFVDEVHRFNK+QQD+FL
Sbjct: 64 AEHAEA--RFLTLSAVAAGVREIRAAMAEATDL-WQAGRRTVLFVDEVHRFNKAQQDAFL 120
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +EDG++VF+GATTENPSF L LLSR RV L L + LL+RA+ D GL
Sbjct: 121 PHVEDGTVVFVGATTENPSFELNKALLSRARVYMLRALDEAALTNLLERALSDPERGL-- 178
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
GG +++V A L DGDAR L+ALEI+A A V EV
Sbjct: 179 --GGRQLQVTEAARALLLRAADGDARRLLSALEIAADLAESGVLDAEV------------ 224
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
VT EA +D+ G++ Y+ ISALHKS+RG+D DAA+YWLARML+GG
Sbjct: 225 ------VT-----EAVAGGARRFDKGGDDFYDQISALHKSIRGSDPDAALYWLARMLDGG 273
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
PLYIARRL+R ASED+G ADP AL A++ +A LG PE ++ LA AY A PK
Sbjct: 274 CDPLYIARRLIRVASEDIGNADPRALQVALNAAEAYERLGSPEGDLALAHAAAYQASVPK 333
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S +Y A AA++ +R G E VP+HLRNAPT +MKE G+G GY Y D+P +A
Sbjct: 334 SNRVYTAWQAAEQDVRRH-GSLE-VPMHLRNAPTGMMKEQGFGSGYRYAHDEPEAFAAGV 391
Query: 536 SFLPPSLEGYKFLD 549
++P +L G ++ +
Sbjct: 392 EYMPDALAGTRYYE 405
>gi|303252682|ref|ZP_07338845.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302648650|gb|EFL78843.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 446
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 14 PLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 187 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNK-------------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 ALLA-----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 348 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 406 PELKDTVF 413
>gi|331090669|ref|ZP_08339518.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400083|gb|EGG79734.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 440
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/439 (43%), Positives = 266/439 (60%), Gaps = 30/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP + +VVGQ H++ + LL A+ +++L SIIF+GP GTGKTTLAK I N+
Sbjct: 16 SPLASRLRPTKLEEVVGQQHIIGKDKLLYRAIRADKLSSIIFYGPSGTGKTTLAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F+ ++A +G KD+ +E A+ KRT+LF+DE+HRFNK QQD LP +
Sbjct: 76 T--SAEFMQMNATIAGKKDMEAVIEQAKNNLGMYGKRTILFIDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR V L PL+ D++ILLKRAV D G+ G
Sbjct: 134 EDGTVILIGATTENPYFEVNGALISRSSVFELKPLEREDIKILLKRAVYDTEKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R E++ DA+EFL GDAR ALNA+E+ +T SD +
Sbjct: 190 TYRAEIDEDALEFLSDISGGDARNALNAVELGILTTP---------------RSDDGKIH 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ TL+ A++ Q + + YD+ G+ HY+ ISA KSMRG+D +AA+Y+LA+ML GE
Sbjct: 235 I---TLEVAEQCIQKRVVRYDKTGDNHYDTISAFIKSMRGSDPNAAVYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL AVS QA +GMPE +ILAQ V Y+A APKS +
Sbjct: 292 KFIARRIMICASEDVGNADPNALTVAVSAAQAVERIGMPEARIILAQAVTYVASAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ A ++ + VP HL+++ K +G+G GY Y D P KQ +LP
Sbjct: 352 SYMAINNAMDNVKR---KKTTVPSHLQDSHYKGAGNLGHGIGYKYAHDYPEHYVKQQYLP 408
Query: 540 PSLEGYKFLDWPKSNTTDK 558
++ F P N +K
Sbjct: 409 DEIKEETFY-HPTENGHEK 426
>gi|340346101|ref|ZP_08669229.1| replication-associated recombination protein A [Prevotella dentalis
DSM 3688]
gi|433651561|ref|YP_007277940.1| AAA ATPase [Prevotella dentalis DSM 3688]
gi|339612480|gb|EGQ17285.1| replication-associated recombination protein A [Prevotella dentalis
DSM 3688]
gi|433302094|gb|AGB27910.1| AAA ATPase [Prevotella dentalis DSM 3688]
Length = 436
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/438 (44%), Positives = 263/438 (60%), Gaps = 34/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D VGQ+HL+ +++LR V S + S I WGPPG GKTTLA+ I + +
Sbjct: 4 PLAERLRPRTLDDYVGQEHLVGKDAVLRKMVESGHISSFILWGPPGVGKTTLAQIIASQL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSAVTSGVKDVR+ +E A++ R + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 KVP--FYTLSAVTSGVKDVREVIERAKQGRFFNAESPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L L D+E +L RA+ + + +
Sbjct: 122 RGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLDKEDLEKILHRAITE-----DRMLKE 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ A + GDAR LN LE+ ES G P V
Sbjct: 177 RDIQLKETAA--ILRYSGGDARKLLNILELMV-------------------ESSGNGPVV 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L +E Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 216 IADRL--VEERLQRNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPQ 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V A+ED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 274 FIARRIVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y + A V+R++ N VPLHLRNAPTKLM ++GY GY Y D P Q +LP
Sbjct: 334 YLGIDTALSVVRKT--GNLPVPLHLRNAPTKLMADLGYHDGYKYPHDYPGNFTVQQYLPN 391
Query: 541 SLEGYKFLDWPKSNTTDK 558
+ G +F SN +K
Sbjct: 392 EMSGQRFWYAQHSNAEEK 409
>gi|117920496|ref|YP_869688.1| recombination factor protein RarA [Shewanella sp. ANA-3]
gi|117612828|gb|ABK48282.1| Recombination protein MgsA [Shewanella sp. ANA-3]
Length = 443
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 263/428 (61%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I + +GQ HLL LR A+ + R S++ WGPPGTGKTTLA+ I +
Sbjct: 14 PLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAHYS 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVKD+R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ ++ +A+ D GL G
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALTDPERGL----GQ 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + D + L CDGDAR ALN LE+ + A DG S
Sbjct: 188 RQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVA-----------------DGGS--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
T + + + +D+ G++ Y+LISA+HKS+RG+ DAA+YW R+LEGG PL
Sbjct: 228 --FTTEMLVQVAGHQVAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + H +G E +AQ + YLA APKS ++
Sbjct: 286 YVARRLLAIASEDVGNADPNAMTVALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+ + RE+ GQ E VP HLRNAPTKLM E+G+G Y Y D+P+A S + P
Sbjct: 346 YTAFKAARALARET-GQ-EAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFP 403
Query: 540 PSLEGYKF 547
SL+ +F
Sbjct: 404 ESLQESQF 411
>gi|52425506|ref|YP_088643.1| recombination factor protein RarA [Mannheimia succiniciproducens
MBEL55E]
gi|52307558|gb|AAU38058.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 446
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 265/425 (62%), Gaps = 33/425 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTLEQYCGQQHLLGNGKPLRKAIEAGHAHSMIFWGPPGTGKTTLAEIIAHKI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L + LLSR RV L L D+ +L++A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNSALLSRARVYILKSLTNQDILHVLEQALADKERGL----GN 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD-GCSPY 361
+++ +E L GDAR+ALN LE+ V+ DES+ G
Sbjct: 188 ENLDLEEGILELLADYVHGDARLALNCLELM---------------VDMADESEKGKKID 232
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L+T E + +D+ G+ Y+LISA+HKS+RG+ DAA+YW AR++ G P
Sbjct: 233 RTLLT-----EVLGERQARFDKQGDRFYDLISAVHKSIRGSAPDAALYWYARIITAGGDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS +
Sbjct: 288 LYVARRLLAIASEDVGNADPRAMQVAIAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A A+++ +ES + VP+HLRNAPTKLMK +GYG Y Y +P +A +++
Sbjct: 348 VYNAFNQAKQLAKESADFD--VPVHLRNAPTKLMKNLGYGAEYRYAHHEPNAYAAGENYF 405
Query: 539 PPSLE 543
P L+
Sbjct: 406 PEELK 410
>gi|440730516|ref|ZP_20910601.1| recombination factor protein RarA [Xanthomonas translucens
DAR61454]
gi|440378761|gb|ELQ15378.1| recombination factor protein RarA [Xanthomonas translucens
DAR61454]
Length = 455
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/410 (47%), Positives = 252/410 (61%), Gaps = 30/410 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+ERMRP ++++VGQ LL+P S LR AV S + S+I WGPPG GKTTLA +
Sbjct: 20 PLRPLAERMRPRTLDEMVGQKRLLAPASALRRAVESGHVHSMILWGPPGCGKTTLALLLA 79
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ +K +SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK+QQD+FLP
Sbjct: 80 HYAEAEFK--AISAVLSGLPEVRLVLAEAAQ-RFADGRRTVLFVDEVHRFNKAQQDAFLP 136
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
IE G+I+F+GATTENPSF L + LLSRCRV L P+ P D+ L+RA+ D GL
Sbjct: 137 HIERGTILFVGATTENPSFELNSALLSRCRVHVLEPVSPQDIVEALQRALHDSERGL--- 193
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
GG + V+ A+ + S DGD R AL LEI+A E+ Q ++ + +
Sbjct: 194 -GGEAIRVSDTALLEIASAADGDVRRALTLLEIAA-------------ELAQGEDGEITA 239
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ V D + +D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG
Sbjct: 240 QTLLQVLADRTRR--------FDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGC 291
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRL R A ED+GLADP A A+ + LG PE + AQ V YLA KS
Sbjct: 292 DPSYLARRLTRMAIEDIGLADPRAQQMALEAWDIYERLGSPEGELAFAQLVLYLASTAKS 351
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
+ Y A A+ +RES Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 352 NAGYAAFNQAKAEVRESGTQE--VPLHLRNAPTKLMKNLGYGEHYQYDHD 399
>gi|409080534|gb|EKM80894.1| hypothetical protein AGABI1DRAFT_126951 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1013
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 198/434 (45%), Positives = 263/434 (60%), Gaps = 35/434 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+E +RP ++ +GQ HLL SLL + + +N S+IFWGPPG GKTTLAK I
Sbjct: 575 HVPLAEVLRPKQLSQFIGQSHLLQEGSLLSTMLQTNASWSLIFWGPPGCGKTTLAKLIAQ 634
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+YK LSA SGV +V+ VE+++K+ KRT+LF+DE+HRFNK+QQD LP
Sbjct: 635 ESDAAYKE--LSATASGVNEVKAVVEESKKMLSLLGKRTILFLDEIHRFNKAQQDVLLPF 692
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA---VDDVNNGLS 297
+E G + IGATTENPSF +I L+SRCRVL L PL + LL ++ VD +N
Sbjct: 693 VEQGLLQLIGATTENPSFRIIGALMSRCRVLRLEPLSDQQMAELLSQSLQRVDQINCQQP 752
Query: 298 K-SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
+ + V + + S GDARVAL+ LEI A + P ++ E ++
Sbjct: 753 QLNESPNHVMLPPSISSRIVSMAGGDARVALSLLEI-AFKSPNDAPEAQIMESLKQ---- 807
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
+L+T +YDR GE+HY++ISALHKS+RG++ AA+YWLARML
Sbjct: 808 ------SLLT-------------SYDRTGEDHYDMISALHKSVRGSNGSAAMYWLARMLT 848
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GE PL+IARR+V ASED+GLAD AL A++ QAC +GMPEC + LA VAYL+ A
Sbjct: 849 AGEDPLFIARRMVVCASEDIGLADRHALPLAMAALQACQVIGMPECRINLAHLVAYLSEA 908
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAK 534
PKS Y A A++ + + N VPL +RNAPT LM+E+GYGK Y Y PD P
Sbjct: 909 PKSTRAYEAYKRAEEAAKAT--SNSPVPLQIRNAPTALMEEMGYGKNYHYNPDFRHPVHN 966
Query: 535 QSFLPPSLEGYKFL 548
Q +LP L +FL
Sbjct: 967 Q-YLPQELMESEFL 979
>gi|346724938|ref|YP_004851607.1| recombination factor protein RarA [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346649685|gb|AEO42309.1| recombination factor protein RarA [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 457
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 197/416 (47%), Positives = 254/416 (61%), Gaps = 33/416 (7%)
Query: 117 LHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
LHV + PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTT
Sbjct: 15 LHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTT 74
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
LA + + +K +SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK+Q
Sbjct: 75 LALLLAHYADAEFK--AISAVLSGLPEVRQVLAEAAQ-RFAGGRRTVLFVDEVHRFNKAQ 131
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAE 191
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
GL G ++V+ ++ + S DGD R AL LEI+A AA
Sbjct: 192 RGL----GAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA--------------G 233
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
E +P L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL R
Sbjct: 234 EGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTR 286
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YL
Sbjct: 287 MLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
A KS + Y A A+ +R S G E VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 347 ASTAKSNAGYAAFNQAKAEVR-STGTQE-VPLHLRNAPTKLMKTLGYGQDYQYDHD 400
>gi|381158319|ref|ZP_09867552.1| AAA ATPase [Thiorhodovibrio sp. 970]
gi|380879677|gb|EIC21768.1| AAA ATPase [Thiorhodovibrio sp. 970]
Length = 451
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/434 (45%), Positives = 268/434 (61%), Gaps = 25/434 (5%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAK 176
+ P PL ERMRP + D VGQ HLL+P L A+ S RL S+I WGPPGTGKTTLA+
Sbjct: 3 ISAPAVPLPERMRPQRLEDCVGQAHLLAPGRPLHQALVSGRLHSMILWGPPGTGKTTLAR 62
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQD 235
N A F+ LSAV +GVK+VR+AV +A++LR + + T+LF+DEVHRFNK+QQD
Sbjct: 63 LFAN--AADAHFIQLSAVLAGVKEVREAVAEAKRLREGLTPQATLLFIDEVHRFNKAQQD 120
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+FLP +EDG++ FIGATTENPSF L + LLSR RV L P+ +E L++RA+ D G
Sbjct: 121 AFLPHVEDGTLTFIGATTENPSFALNSALLSRARVYVLEPMDTLALETLIRRALGDSERG 180
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355
L G + + +A + L DGDAR AL+ LE++A + V++ Q
Sbjct: 181 L----GQLGLSIAPEACQQLARVADGDARRALSLLELAA---------QRVEQAGQGGAP 227
Query: 356 DGCSPYVA--LVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
+ +P V +T + +D+ G+ Y+ ISALHKS+RG+ DAA+YWLAR
Sbjct: 228 EVTNPEVPGPSMTTSVIEAVLDAGARRFDKGGDAFYDQISALHKSVRGSAPDAALYWLAR 287
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
M++GG PLY+ARRLVR ASED+G ADP AL ++ + A LG PE + LAQ YL
Sbjct: 288 MIDGGCDPLYLARRLVRIASEDIGNADPRALELTLNAWDAMQRLGSPEGELALAQAAVYL 347
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP- 531
A APKS ++Y A ++ + ++ Q VP HL NAPT LM+ +G G Y Y D+P
Sbjct: 348 ACAPKSNAVYIAW---KQALADARAQGSLPVPAHLCNAPTALMQAMGKGARYRYAHDEPD 404
Query: 532 --SAKQSFLPPSLE 543
+A +++ P L+
Sbjct: 405 AYAAGENYFPDQLK 418
>gi|387814155|ref|YP_005429638.1| DNA-dependent ATPase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381339168|emb|CCG95215.1| DNA-dependant ATPase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 444
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 263/439 (59%), Gaps = 31/439 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS PL+ RMRP ++ VGQ HL+ P LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFQTETGFQPLAARMRPTSLEGYVGQAHLVGPGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N +S F +SAV SGVK++R+ VE AR + + T+LFVDEVHRFNK
Sbjct: 63 TTFARLLANVGDLS--FETISAVLSGVKEIREVVERARNRKQSQGRDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D+ LL A++
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEAADIRRLLDSALES 180
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
G + G RVE + + GDAR ALN LE++A A
Sbjct: 181 -EQGFA---GQLRVE--ESVLATMAEASGGDARRALNILEVAADLA-------------- 220
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
E + DG + VT ++ Q +D+ G+ Y+ ISALHKS+RG++ D ++YWL
Sbjct: 221 EPDDDGNNR----VTAQTLEQVLQTSLRRFDKGGDVFYDQISALHKSVRGSNPDGSLYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG PLY+ARRLVR ASED+G ADP AL + + A LG PE + LAQ V
Sbjct: 277 CRMLDGGCDPLYVARRLVRIASEDIGNADPRALQITLQAWDAQERLGSPEGELALAQAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLALAPKS ++Y+A IR + VP+HLRNAPTKL+K +G+G+ Y Y D+P
Sbjct: 337 YLALAPKSNAVYKAYNQCIADIRSD--PDYEVPVHLRNAPTKLLKSMGHGEEYRYAHDEP 394
Query: 532 ---SAKQSFLPPSLEGYKF 547
+A +++LP ++ ++
Sbjct: 395 DAYAAGEAYLPEAIHQRRY 413
>gi|66046406|ref|YP_236247.1| recombination factor protein RarA [Pseudomonas syringae pv.
syringae B728a]
gi|422675167|ref|ZP_16734514.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris
str. M302273]
gi|424072738|ref|ZP_17810159.1| ATPase AAA [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|440746189|ref|ZP_20925475.1| recombination factor protein RarA [Pseudomonas syringae BRIP39023]
gi|63257113|gb|AAY38209.1| Recombination protein MgsA [Pseudomonas syringae pv. syringae
B728a]
gi|330972888|gb|EGH72954.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris
str. M302273]
gi|407997200|gb|EKG37643.1| ATPase AAA [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|440371675|gb|ELQ08514.1| recombination factor protein RarA [Pseudomonas syringae BRIP39023]
Length = 440
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/426 (46%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLAK ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAK-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L S DGD R LN LE ++ A DG V
Sbjct: 185 RQLTLSDEGFAILMSAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 GLLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|425900284|ref|ZP_18876875.1| recombination factor protein RarA [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397890130|gb|EJL06612.1| recombination factor protein RarA [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 441
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 267/430 (62%), Gaps = 38/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALHKLVQRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLSDEGFQMLLAAADGDGRRLLNLLENASDLA-----------------EDGTQIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 ELLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKAAMRSAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKF 547
P +LE F
Sbjct: 399 FPEALEPQPF 408
>gi|344304719|gb|EGW34951.1| hypothetical protein SPAPADRAFT_69321 [Spathaspora passalidarum
NRRL Y-27907]
Length = 715
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 202/501 (40%), Positives = 285/501 (56%), Gaps = 22/501 (4%)
Query: 59 NPNQNPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEP----SPLFKRLKTRHDVDST 114
+P + P +P L+ Q K +AA NA Q K+++ EP S + + H++
Sbjct: 103 SPQEKPKEPPLEE----QLKEMAAAVNASQIKKEEIVEEPPKRQSDILAKANEMHELKRL 158
Query: 115 TALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL 174
L PL+ R+RP +++D GQ+HLL N LR+ + ++ +PS + WG PG GKTTL
Sbjct: 159 AGL-----PLAHRLRPKSLDDFYGQEHLLGKNGPLRNIIEADHIPSFLLWGGPGIGKTTL 213
Query: 175 AKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQ 234
A+ + S S KFV LS S K ++ A R + +RT+LF+DE+HRFNK+ Q
Sbjct: 214 ARIVAKST--SCKFVELSGADSNAKALKQVFTHAENHRNLTGQRTILFLDEIHRFNKAVQ 271
Query: 235 DSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
D LP IE G + IGATTENPSF L LLSR + PL + +L RA+ +VN
Sbjct: 272 DLLLPAIEKGIVTVIGATTENPSFTLNNALLSRVHTFVMEPLTSESIVKILGRALYEVNK 331
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAVRVPVKEVKEVEQED 353
+ G + ++ DA +++ GD+RVALN LE ++A + + + +E +++
Sbjct: 332 LRKQLYGMHYISLSKDAFDYIAGLSMGDSRVALNILESVNAYLSTSKFST-DNEEAQKDI 390
Query: 354 ESDGCSPYVALVTLDDAKEAFQCK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
V +T + + + H YDR GE HY++ISA HKS+RG+D DAA+++L
Sbjct: 391 PESQNKQGVIKITESILRPLLKTRNFHQVYDRKGESHYDIISAFHKSVRGSDPDAAMFYL 450
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
+ML GGE PL+I RR++ ASEDVGL D L V+ A F+GMPE +ILA
Sbjct: 451 VKMLSGGEDPLFIIRRMIVIASEDVGLRDSSCLPFVVAAKDALEFVGMPEGEIILAHVAN 510
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDD 530
LA APKS YR+L AQK+I E + VPLHLRNAPTKLMKE+GYG+ Y Y P
Sbjct: 511 KLARAPKSTKSYRSLRTAQKLISEEPELTKLPVPLHLRNAPTKLMKELGYGQEYKYNPSF 570
Query: 531 P--SAKQSFLPPSLEGYKFLD 549
KQ + P +E KFL+
Sbjct: 571 AYGKVKQGYFPEGMEPVKFLE 591
>gi|429331970|ref|ZP_19212709.1| recombination factor protein RarA [Pseudomonas putida CSV86]
gi|428763360|gb|EKX85536.1| recombination factor protein RarA [Pseudomonas putida CSV86]
Length = 441
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 260/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++++ VGQ HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARMRPASLDEYVGQQHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEEALRRLVQRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ +A L + DGD R LN LE ++ A DG
Sbjct: 185 RNLSLSDEAFSMLLAAADGDGRRMLNFLENASDLA-----------------EDGGEIGA 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG
Sbjct: 228 ELLQSLLGDTRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLSAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y AA +RE+ VPLHLRNAPTKLMK++GYG+ Y Y D+P +A +
Sbjct: 341 AVYMGFKAA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPGAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPEDLE 404
>gi|389642551|ref|XP_003718908.1| AAA family ATPase [Magnaporthe oryzae 70-15]
gi|351641461|gb|EHA49324.1| AAA family ATPase [Magnaporthe oryzae 70-15]
Length = 575
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 200/430 (46%), Positives = 270/430 (62%), Gaps = 17/430 (3%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQD L+ P+ +LRS + S+R+PS+I WG GTGKTT+A+ I +
Sbjct: 144 APLAERMRPRTLDDVYGQD-LVGPSGVLRSLIDSDRVPSMILWGGSGTGKTTIARCIAQT 202
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +FV L+A ++GV + + ++A + +RT++F DE+HRFNK+QQD FL +
Sbjct: 203 VG--SRFVELNATSTGVNECKKLFQEAASELGLTGRRTIIFCDEIHRFNKAQQDVFLKPV 260
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + + LLSRCR TL+ L DV+ +L RA+D+ V
Sbjct: 261 EAGTITLIGATTENPSFRVQSALLSRCRTFTLSKLTSEDVQRILVRALDEEQKIAGDDVQ 320
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + I +L + DGDAR ALN LE++ R+ + + D +
Sbjct: 321 PASPLIDAEMIAYLANFADGDARTALNLLELALSLTRPRI----------DGDGDVAAGP 370
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
VAL T +D K A K L YDRAG++HY+ ISA HKS+RG+D DAA+Y+LARML+ GE P
Sbjct: 371 VAL-TKEDVKSAL-TKTLVYDRAGDQHYDNISAFHKSIRGSDPDAALYYLARMLQSGEDP 428
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARRLV ASEDVGLAD L A + Y A +G+PE + LA L LAPKS
Sbjct: 429 LFIARRLVVVASEDVGLADNTLLPLATAAYTAAQQIGLPEARIPLAHATVALCLAPKSTR 488
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR L A +RE VP+HLRNAPT+LM+E+GYG Y Y P+ D KQ +LP
Sbjct: 489 AYRGLNNAFTALREPGVAALPVPIHLRNAPTRLMREMGYGAEYKYNPNYKDGKVKQQYLP 548
Query: 540 PSLEGYKFLD 549
L G +FL+
Sbjct: 549 DDLVGRRFLE 558
>gi|46447333|ref|YP_008698.1| recombination factor protein RarA [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400974|emb|CAF24423.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 422
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 269/429 (62%), Gaps = 41/429 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E++RP N+ND+VGQDH+L N L+ + S S+I WGPPG GKT++A+ + +
Sbjct: 7 PLAEQLRPKNLNDIVGQDHILGENGLITKTIESQIPLSVILWGPPGCGKTSIAR--LYAQ 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A + +F+ +SA+ SGV D++ +++A+ + +K T+LFVDE+HRFNKSQQD+FLP +E
Sbjct: 65 AFNMQFISMSAIFSGVADLKKTIKEAQNQPL-FHKGTLLFVDEIHRFNKSQQDAFLPFVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+I+ IGATTENPSF+L LLSR RVL + PL +E LL+R
Sbjct: 124 NGTIILIGATTENPSFYLNGALLSRLRVLPIYPLDGFSLEQLLERYEKQF---------- 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + +A +L + GD R N +E +R K++ ++ P +
Sbjct: 174 APLPLTAEARHWLITCAQGDGRYLYNLIE------NLRYASKQILDI----------PLL 217
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ FQ + +D+ G++HYNLISALHKS+RG+D +AAIYW RMLEGGE+PL
Sbjct: 218 --------EKIFQKRSPLFDKRGDQHYNLISALHKSVRGSDPNAAIYWFTRMLEGGEEPL 269
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARRL+R A ED+GL+DP AL A++ A LG PE + LA+ V YLALAPKS ++
Sbjct: 270 FLARRLIRMAVEDIGLSDPQALPLAIAAKDAYEMLGSPEGELALAEVVIYLALAPKSNAV 329
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
YRA G A++ ++ N PL + NAPTK+MK +GYGK Y Y PD P A Q++ P
Sbjct: 330 YRAFGMAKESASKTSYLNP--PLTILNAPTKMMKNLGYGKDYQYDPDLPEAFSGQNYFPD 387
Query: 541 SLEGYKFLD 549
SLE F +
Sbjct: 388 SLEKQHFYE 396
>gi|389681288|ref|ZP_10172633.1| recombination factor protein RarA [Pseudomonas chlororaphis O6]
gi|388554824|gb|EIM18072.1| recombination factor protein RarA [Pseudomonas chlororaphis O6]
Length = 441
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/426 (44%), Positives = 266/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALHKLVQRALSE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLSDEGFQMLLAAADGDGRRLLNLLENASDLA-----------------EDGTEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 ELLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKAAMRSAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P +LE
Sbjct: 399 FPEALE 404
>gi|332879429|ref|ZP_08447125.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047092|ref|ZP_09108699.1| ATPase, AAA family [Paraprevotella clara YIT 11840]
gi|332682619|gb|EGJ55520.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529693|gb|EHG99118.1| ATPase, AAA family [Paraprevotella clara YIT 11840]
Length = 423
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 257/422 (60%), Gaps = 38/422 (9%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP ++D +GQ HL+ +++LR + S R+ S I WGPPG GKTTLA+ I +
Sbjct: 3 APLAERLRPQTLDDYIGQKHLVGSDAVLRKMIDSGRISSFILWGPPGVGKTTLAQIIAHR 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSAVTSGVKDVR+ +E AR R + +LF+DE+HRF+KSQQDS L +
Sbjct: 63 LETP--FYTLSAVTSGVKDVREVIEKARNNRFFTQASPILFIDEIHRFSKSQQDSLLGAV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF +I PLLSRC++ L L D+ LL +AV+ + +
Sbjct: 121 EQGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLTKDDLLELLHKAVE-------RDII 173
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + + GDAR LN LE+ E+DG
Sbjct: 174 LKTKHIEFRETDAMLRYSGGDARKLLNILELVV-------------------EADGTDQ- 213
Query: 362 VALVTLDDAKEA--FQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V + DA A Q LAYD+ GE HY++ISA KS+RG+D DAA+YWLARM+EGGE
Sbjct: 214 ---VVITDAVVAGRLQQNPLAYDKGGELHYDIISAFIKSIRGSDPDAALYWLARMIEGGE 270
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRLV ASED+GLA+P AL A + ++A +G PE + LA+ YLA +PKS
Sbjct: 271 DPSFIARRLVISASEDIGLANPNALLLANAAFEAVMKIGWPEGRIPLAEATVYLATSPKS 330
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y+ + A +++R++ N VPLHLRNAPT+LM+E+GYGK Y Y D +Q F
Sbjct: 331 NSAYKGINDALQLVRQT--GNLPVPLHLRNAPTQLMEELGYGKDYKYAHDYQGHFVEQQF 388
Query: 538 LP 539
LP
Sbjct: 389 LP 390
>gi|91775481|ref|YP_545237.1| recombination factor protein RarA [Methylobacillus flagellatus KT]
gi|91709468|gb|ABE49396.1| Recombination protein MgsA [Methylobacillus flagellatus KT]
Length = 440
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/431 (43%), Positives = 258/431 (59%), Gaps = 36/431 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ER+RP ++++VVGQ HLL LR A S +LPS+I WGPPG GKTTLA+ I
Sbjct: 10 PQAPLAERLRPKSLDEVVGQRHLLGEGKPLRLAFTSGKLPSMILWGPPGVGKTTLARLIA 69
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
N+ +F+ LSAV +G+KD+R+AVE A +S +RT+LFVDEVHRFNK QQD+FLP
Sbjct: 70 NTADA--EFIPLSAVLAGIKDIREAVERAEHTLQQSGRRTILFVDEVHRFNKGQQDAFLP 127
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I FIGATTENPSF + + LLSR +V LN L +++ LL+R ++
Sbjct: 128 FVESGLITFIGATTENPSFEVNSALLSRAQVFVLNALSEDELKQLLERGKQEMQ------ 181
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ + + +E + DGDAR LN +E AA+ V ++
Sbjct: 182 ---LDIPLTPEVVEQVLGYADGDARRLLNFVE-GLFNAALTAGVTKIDA----------- 226
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ + K +D+ GE Y+ ISALHKS+RG++ DAA+YW RML+GG
Sbjct: 227 --------EFLQSTMASKLRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFLRMLDGGA 278
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ RR+VR A ED+G+ADP A A+ Q LG PE + L+ V YLA+A KS
Sbjct: 279 DPLYLGRRIVRMAVEDIGIADPRAQTMALEACQIYERLGSPEGELALSNAVIYLAVAAKS 338
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
+ Y A A+ + + ++ VPLHLRNAPTKLMK++ YGK Y Y ++P +A +
Sbjct: 339 NAAYMAYNQAKAFV--ASDKSRPVPLHLRNAPTKLMKDLNYGKEYRYAHNEPGAYAAGED 396
Query: 537 FLPPSLEGYKF 547
+ P LE +F
Sbjct: 397 YFPDGLEAIQF 407
>gi|333382183|ref|ZP_08473860.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC
BAA-286]
gi|332829214|gb|EGK01878.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC
BAA-286]
Length = 422
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 195/438 (44%), Positives = 264/438 (60%), Gaps = 37/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ ++LR + S R+PS + WGPPG GKTTLA+ I N++
Sbjct: 4 PLAERLRPRTLDEYIGQKHLVGEGAILRKMIESGRIPSFLLWGPPGVGKTTLAQIIANTL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA+ SGVKDVR+ +E A+K + + K +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 DTP--FYTLSAINSGVKDVREVIEQAKKSQFFNTKSPILFIDEIHRFSKSQQDSLLNAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF +I PLLSRC+V L L D+ L RAV ++ +
Sbjct: 122 TGVITLIGATTENPSFEVIRPLLSRCQVYVLQSLDKDDLIELAHRAV-------TQDIIL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V L GDAR LN L++ +T A D SD
Sbjct: 175 KERNVELQETNALLRFSGGDARKLLNILDL--VTGA--------------DVSDKIVITD 218
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LVT E Q AYD+ GE HY++ISA KS+RG+D DAAIYWLARM+ GGE P
Sbjct: 219 KLVT-----ERLQENPAAYDKGGEMHYDIISAFIKSIRGSDPDAAIYWLARMVAGGEDPK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C+ +G PE ++LA+ YLA +PKS S
Sbjct: 274 FIARRLVISAAEDIGLANPNALLLANACFDTLQKIGWPEGRIVLAEATVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A ++ E+ N VPLHLRNAPTKLMKE+ YGK Y Y + ++ +Q ++P
Sbjct: 334 YMAIDEAIALVNET--GNLPVPLHLRNAPTKLMKELDYGKNYKYAHSFENNFVQQDYVPK 391
Query: 541 SLEGYKFLDW-PKSNTTD 557
++G +F W P+ N ++
Sbjct: 392 EIKGRQF--WKPQQNASE 407
>gi|390954628|ref|YP_006418386.1| AAA ATPase [Aequorivita sublithincola DSM 14238]
gi|390420614|gb|AFL81371.1| AAA ATPase [Aequorivita sublithincola DSM 14238]
Length = 425
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 269/441 (60%), Gaps = 38/441 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+APL+ER+RP + + Q HL+ P L S + + +PS+IFWGPPGTGKTTLA I N
Sbjct: 2 NAPLAERIRPNTLEGYLSQQHLVGPKGSLTSQLSTGMIPSMIFWGPPGTGKTTLANIIAN 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKL-RVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F LSAV SGV VR+ +E A+K + S K +LF+DE+HRF+KSQQDS L
Sbjct: 62 ESG--RPFYILSAVDSGVAAVREVIEKAKKSDNLFSTKNPILFIDEIHRFSKSQQDSLLG 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I IGATTENPSF +I LLSRC+V L D+E LLKRA+ + + L+K
Sbjct: 120 AVEKGWITLIGATTENPSFEVIPALLSRCQVYVLESFSREDMEALLKRALKE-DEILAKK 178
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+V + E + GDAR LN LE+ ++ ++S+ +
Sbjct: 179 ------KVTLNETEAIIRLSGGDARRLLNILELVVLS----------------EKSEKVT 216
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+T + + Q + YD+ GE+HY++ISA KSMRG+D +AA+YWLARM+EGGE
Sbjct: 217 -----ITNELVMQKAQKNTVLYDKTGEQHYDIISAFIKSMRGSDPNAAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARR+V ASED+G+A+P AL A S +QA + +G PE +IL+QC YLA +PKS
Sbjct: 272 DIKFIARRMVILASEDIGMANPNALLLANSTFQAVNTIGYPEARIILSQCAIYLATSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y+A+G AQ+++R++ + VPL +RNAPTKLMK++GYGK Y Y + F
Sbjct: 332 NASYKAIGEAQQLVRQT--GDLSVPLSIRNAPTKLMKQLGYGKEYEYAHNYEGNFVPHEF 389
Query: 538 LPPSLEGYKFL---DWPKSNT 555
LP ++G F + PK N+
Sbjct: 390 LPEEIKGTTFYRPGNNPKENS 410
>gi|146311073|ref|YP_001176147.1| recombination factor protein RarA [Enterobacter sp. 638]
gi|145317949|gb|ABP60096.1| Recombination protein MgsA [Enterobacter sp. 638]
Length = 447
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 197/428 (46%), Positives = 258/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 DADVE--RLSAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L PL D+E +L +A++D G GG
Sbjct: 132 DGTIFFIGATTENPSFELNSALLSRARVYLLKPLTTEDIEQVLTQAMEDKARGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + D + +GDAR ALN LE+ A A + K V + E E G
Sbjct: 188 QDVVLPDDTRRAIAELVNGDARRALNTLEMMADMAELGDAGKRVLKSELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPSEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|333893147|ref|YP_004467022.1| recombination factor protein RarA [Alteromonas sp. SN2]
gi|332993165|gb|AEF03220.1| recombination factor protein RarA [Alteromonas sp. SN2]
Length = 444
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 189/433 (43%), Positives = 264/433 (60%), Gaps = 35/433 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P APL+ +MRPV I++ GQ HLL N LR + + S+I WGPPGTGKTTLA+ I
Sbjct: 11 PFAPLAAKMRPVTIDEYAGQSHLLGTNKPLRKMLEAGHCHSMILWGPPGTGKTTLAELIA 70
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
S + +SAVTSGVKD+R A+ DA K + N+RT+LFVDEVHRFNKSQQD+FLP
Sbjct: 71 TYTNAS--VIRISAVTSGVKDIRAAM-DAAKENSRYNQRTLLFVDEVHRFNKSQQDAFLP 127
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G++ FIGATTENPSF L LLSR RV L L+ + L++RA+ D GL
Sbjct: 128 FVESGTVTFIGATTENPSFELNNALLSRVRVYVLKALEQEALAELMQRALTDEEKGL--- 184
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
G ++ + DA L C GD R L LE++A D ++
Sbjct: 185 -GSRQLSIEEDASNALLGLCGGDGRRLLTYLELAA------------------DFTEN-- 223
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+++++ D ++A K +YD G+ Y+LISA HKS+RG+D DAA+YW AR+L+GG
Sbjct: 224 ---SVISIADIEQAVGEKIASYDNKGDTFYDLISAFHKSVRGSDPDAALYWYARILDGGG 280
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
LY+ARRL+ ASED+G ADP A+ +++ + H +G E +AQ Y ALA KS
Sbjct: 281 DALYVARRLLAIASEDIGNADPRAMQLSINAWDTFHRVGPAEGERAIAQAAVYCALAAKS 340
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A A+ + R++ + VP+HLRNAPT LMK++G+G GY Y ++P +A +
Sbjct: 341 NAVYMAFSQAKALARKT--SDAPVPMHLRNAPTDLMKDLGHGDGYRYAHNEPNAFAAGEV 398
Query: 537 FLPPSLEGYKFLD 549
+LP S+ G + +
Sbjct: 399 YLPDSIVGTRLYE 411
>gi|359404652|ref|ZP_09197480.1| ATPase, AAA family [Prevotella stercorea DSM 18206]
gi|357560102|gb|EHJ41508.1| ATPase, AAA family [Prevotella stercorea DSM 18206]
Length = 441
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 191/424 (45%), Positives = 263/424 (62%), Gaps = 36/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + +D VGQ HL+ +++LR + S R+ S I WGPPG GKTTLA+ I + +
Sbjct: 20 PLAERMRPRSFDDYVGQQHLVGKDAVLRKMIESGRVSSFILWGPPGVGKTTLAQIISHRL 79
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 80 ETP--FYTLSAVTSGVKDVRDVIERAKNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVE 137
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL+ D+ LL RAV + V
Sbjct: 138 RGIVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKEDLLQLLNRAV-------TTDVEL 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + L GDAR LN L++ + C P
Sbjct: 191 SKLNIQLKQTDALLRYSGGDARKLLNILQLVV---------------------ESC-PGD 228
Query: 363 ALVTLDDAKEA-FQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+V D+ A Q L+YD+ GE HY++ISA KS+RG+D D A+YW+ARM+EGGE P
Sbjct: 229 QIVIDDEMVVACLQQNPLSYDKEGEMHYDIISAFIKSIRGSDPDGALYWMARMIEGGEDP 288
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ V YLA +PKS S
Sbjct: 289 QFIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEAVVYLATSPKSNS 348
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y + A +++R++ N+ VPLHLRNAPTKLMK++GY GY Y+ D P+ A Q ++P
Sbjct: 349 AYLGINHALEIVRQT--GNQPVPLHLRNAPTKLMKDLGYSDGYKYSHDYPNHFAPQQYMP 406
Query: 540 PSLE 543
+L+
Sbjct: 407 DALK 410
>gi|311280198|ref|YP_003942429.1| AAA ATPase [Enterobacter cloacae SCF1]
gi|308749393|gb|ADO49145.1| AAA ATPase central domain protein [Enterobacter cloacae SCF1]
Length = 447
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 258/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPETLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E++L +A+DD + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSVDDIELVLTQAMDDTSRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QNIVLPDDTRRAIAELVNGDARRALNTLEMMADMA----------------ESDDAGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKAGL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFP 407
Query: 540 PSLEGYKF 547
L ++
Sbjct: 408 QELAQTRY 415
>gi|337280820|ref|YP_004620292.1| ATPase [Ramlibacter tataouinensis TTB310]
gi|334731897|gb|AEG94273.1| ATPase protein, AAA family-like protein [Ramlibacter tataouinensis
TTB310]
Length = 440
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 261/432 (60%), Gaps = 38/432 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+ER+RP ++ +V+GQ HLL LR A S + S I WGPPG GKTT+A+ +
Sbjct: 10 PSQPLAERLRPRSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTIARLMA 69
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKR-TVLFVDEVHRFNKSQQDSFL 238
+ A +F+ +SAV GVKD+R+AVE A++ R +R T++FVDEVHRFNKSQQD+FL
Sbjct: 70 D--AFDAQFITISAVLGGVKDIREAVEAAQRARGGLEQRSTIVFVDEVHRFNKSQQDAFL 127
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G FIGATTENPSF + + LLSR V L PL D+ L+ +A +
Sbjct: 128 PHVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLTEDDLAKLVAKA---------Q 178
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
++G + A L + DGDAR LN LE A+ A QE
Sbjct: 179 AIGAVPA-LEDTAQGRLIAYADGDARRLLNTLETLAVAAT------------QEGR---- 221
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
A +T D + + YD+ GE+ Y+ ISALHKS+RG+D DA++YW RML+GG
Sbjct: 222 ----AQITDDWLLKVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDASLYWFVRMLDGG 277
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARRLVR ASED+GLADP AL A+ + LG PE + LA+CV YLA+APK
Sbjct: 278 ADPRYMARRLVRMASEDIGLADPRALRLALDAAETYERLGSPEGELALAECVVYLAVAPK 337
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S +IY A A+ ++R+ VPLHLRNAPT+LMK++ YGKGY Y D+ +A +
Sbjct: 338 SNAIYAAFNEAKALVRKD--GTRPVPLHLRNAPTQLMKQLEYGKGYRYAHDEAGGFAAGE 395
Query: 536 SFLPPSLEGYKF 547
S+ P L+ +F
Sbjct: 396 SYFPEGLQPPRF 407
>gi|325578148|ref|ZP_08148283.1| replication-associated recombination protein A [Haemophilus
parainfluenzae ATCC 33392]
gi|325159884|gb|EGC72013.1| replication-associated recombination protein A [Haemophilus
parainfluenzae ATCC 33392]
Length = 446
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+++E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGVKEIRESIERAKQNRL-ADRQTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L L ++E +L++A+ D GL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYLLKSLTVAEIEQVLQQAISDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V E E + D
Sbjct: 189 -RLVLEENLLQVLAEYVNGDARLALNCLELM---------VDMAPETENGKKLD------ 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL KE + +D+ G+ Y+LISALHKS+RG+ ADAA+YW AR++ G PL
Sbjct: 233 --LTL--LKEVLGERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YNAFNAAKQ--HAKAFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|395498057|ref|ZP_10429636.1| recombination factor protein RarA [Pseudomonas sp. PAMC 25886]
Length = 440
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 266/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL+RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLQRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V+ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSVSEEGFKILLTAADGDGRRFLNLLENASDLA-----------------EDGSEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDDLE 404
>gi|237800567|ref|ZP_04589028.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023427|gb|EGI03484.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 440
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGR 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ ++ + L S DGD R LN LE ++ A DG +
Sbjct: 185 RRLTLSDEGFAILMSAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDDLE 404
>gi|120554468|ref|YP_958819.1| recombination factor protein RarA [Marinobacter aquaeolei VT8]
gi|120324317|gb|ABM18632.1| Recombination protein MgsA [Marinobacter aquaeolei VT8]
Length = 444
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 263/439 (59%), Gaps = 31/439 (7%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
DS PL+ RMRP ++ VGQ HL+ P LR AV +L S+I WGPPG GK
Sbjct: 3 DSLFQTETGFQPLAARMRPTSLEGYVGQAHLVGPGKPLRRAVEQGQLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT A+ + N +S F +SAV SGVK++R+ VE AR + + T+LFVDEVHRFNK
Sbjct: 63 TTFARLLANVGDLS--FETISAVLSGVKEIREVVERARNRKQSQGRDTLLFVDEVHRFNK 120
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP IEDG+ +F+GATTENPSF L + LLSR RV L L+ D+ LL A++
Sbjct: 121 SQQDAFLPHIEDGTFIFVGATTENPSFELNSALLSRTRVYVLKNLEAADIRRLLDSALES 180
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
G + G RVE + + GDAR ALN LE++A A
Sbjct: 181 -EQGFA---GQLRVE--ESVLATMAEASGGDARRALNILEVAADLA-------------- 220
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
E + DG + VT ++ Q +D+ G+ Y+ ISALHKS+RG++ D ++YWL
Sbjct: 221 EPDDDGNNR----VTAQTLEQVLQTSLRRFDKGGDVFYDQISALHKSVRGSNPDGSLYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG PLY+ARRLVR ASED+G ADP AL + + A LG PE + LAQ V
Sbjct: 277 CRMLDGGCDPLYVARRLVRIASEDIGNADPRALQITLQAWDAQERLGSPEGELALAQAVT 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLALAPKS ++Y+A IR + VP+HLRNAPTKL+K +G+G+ Y Y D+P
Sbjct: 337 YLALAPKSNAVYKAYNQCIADIRSD--PDYEVPVHLRNAPTKLLKSMGHGEEYRYAHDEP 394
Query: 532 ---SAKQSFLPPSLEGYKF 547
+A +++LP ++ ++
Sbjct: 395 DAYAAGEAYLPEAIYQRRY 413
>gi|29346615|ref|NP_810118.1| recombination factor protein RarA [Bacteroides thetaiotaomicron
VPI-5482]
gi|383122804|ref|ZP_09943493.1| hypothetical protein BSIG_0449 [Bacteroides sp. 1_1_6]
gi|29338511|gb|AAO76312.1| putative ATPase, AAA family [Bacteroides thetaiotaomicron VPI-5482]
gi|251842096|gb|EES70176.1| hypothetical protein BSIG_0449 [Bacteroides sp. 1_1_6]
Length = 422
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 199/439 (45%), Positives = 271/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAI--TTDTILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ VE + E
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELV---------------VESDTEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDDMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C++ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLLANACFETLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKEKRI--WQPQNNAAEQ 407
>gi|422620242|ref|ZP_16688924.1| recombination factor protein RarA [Pseudomonas syringae pv.
japonica str. M301072]
gi|330900604|gb|EGH32023.1| recombination factor protein RarA [Pseudomonas syringae pv.
japonica str. M301072]
Length = 440
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L S DGD R LN LE ++ A DG V
Sbjct: 185 RQLALSDEGFAMLMSAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 GLLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|429741507|ref|ZP_19275165.1| ATPase, AAA family [Porphyromonas catoniae F0037]
gi|429158613|gb|EKY01152.1| ATPase, AAA family [Porphyromonas catoniae F0037]
Length = 431
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 197/440 (44%), Positives = 269/440 (61%), Gaps = 37/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + GQ HL+ P+ +LR + + RLPS+I WGPPG GKTTL++ I S+
Sbjct: 7 PLAERMRPETLEHYYGQSHLVGPDGILRKMIEARRLPSLILWGPPGVGKTTLSEIIARSL 66
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR---VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ F LSAV SGVKDVR+A+E K S+ R +LF+DE+HRF+KSQQDS L
Sbjct: 67 GAN--FYSLSAVHSGVKDVREALEQIAKDGGGIFSSDIRPILFIDEIHRFSKSQQDSLLG 124
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF +I PLLSRC+V TL+PL ++ LL A+ + LSK
Sbjct: 125 AVEQGVVTLIGATTENPSFEVIRPLLSRCQVYTLSPLSKEEILALLHHALTS-DEMLSKR 183
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
R+E+ + L GDAR ALN LE+ ++ +D S
Sbjct: 184 ----RIELTE--TDALMQLSGGDARRALNILELVTLSTT----------------ADPLS 221
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+LV+ E Q +A+D+ GE HY++ SAL KS+RG+D DAAIYWLAR++EGGE
Sbjct: 222 ITNSLVS-----EHVQANPIAFDKGGELHYDIASALIKSIRGSDPDAAIYWLARLIEGGE 276
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P +IARRL+ A+ED+GLA+P AL A +C +G PE + LA+ V YLA + KS
Sbjct: 277 DPSFIARRLMISAAEDIGLANPNALLLANACAMTLDRIGWPEGRIPLAETVIYLACSEKS 336
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
S Y A+ A +R + N VPLHLRNAPT+LM ++GYG GY+Y D P +Q +
Sbjct: 337 NSAYNAINKALTRVRAT--GNLPVPLHLRNAPTELMSDLGYGAGYLYAHDYPGHFVQQQY 394
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP ++ G +F ++N ++
Sbjct: 395 LPDAIVGERFWQSDEANASE 414
>gi|425065032|ref|ZP_18468152.1| Holliday junction DNA helicase [Pasteurella multocida subsp.
gallicida P1059]
gi|404384486|gb|EJZ80920.1| Holliday junction DNA helicase [Pasteurella multocida subsp.
gallicida P1059]
Length = 445
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +EFL +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLEFLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+ PKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVVPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|161485713|ref|NP_642336.2| recombination factor protein RarA [Xanthomonas axonopodis pv. citri
str. 306]
Length = 457
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/413 (47%), Positives = 252/413 (61%), Gaps = 33/413 (7%)
Query: 117 LHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
LHV + PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTT
Sbjct: 15 LHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTT 74
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
LA + + +K +SAV SG+ DVR + +A + R +RTVLFVDEVHRFNK+Q
Sbjct: 75 LALLLAHYADAEFK--AISAVLSGLPDVRQVLAEAAQ-RFAGGRRTVLFVDEVHRFNKAQ 131
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAE 191
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
GL G ++V+ ++ + S DGD R AL LEI+A AA
Sbjct: 192 RGL----GAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA--------------G 233
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
E +P L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL R
Sbjct: 234 EGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTR 286
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YL
Sbjct: 287 MLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY 526
A KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+ Y Y
Sbjct: 347 ASTAKSNAGYAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQDYQY 397
>gi|240143952|ref|ZP_04742553.1| ATPase, AAA family [Roseburia intestinalis L1-82]
gi|257203986|gb|EEV02271.1| ATPase, AAA family [Roseburia intestinalis L1-82]
gi|291534968|emb|CBL08080.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [Roseburia intestinalis M50/1]
gi|291539530|emb|CBL12641.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [Roseburia intestinalis XB6B4]
Length = 443
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 267/439 (60%), Gaps = 29/439 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP ++++VGQ H++ + LL A+ +++L SII +GPPGTGKTTLAK I NS
Sbjct: 16 SPLASRLRPTTLDEMVGQQHIIGKDKLLYRAIKADKLSSIILYGPPGTGKTTLAKVIANS 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +F+ ++A ++G KD+ D + A+ K+T+LF+DE+HRFNK QQD LP +
Sbjct: 76 T--SAEFLQMNATSAGKKDMEDVIAKAKNNMGMFGKKTILFIDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + LLSR + L L+ D++ L+ RAV+D G+ G
Sbjct: 134 EDGTIILIGATTENPYFEVNGALLSRSIIFELKSLEKEDIKTLILRAVNDTQKGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ DA++FL +GDAR AL A+E+ +T E DG
Sbjct: 190 AYHAVIDEDALDFLADISNGDARAALTAVELGILTT--------------ERSGDG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TL A E Q + + YD++G+ HY+ +SA KSMRG+D DAA+Y+LARML GE
Sbjct: 232 LIHITLSVASECIQKRVVKYDKSGDNHYDTVSAFIKSMRGSDPDAAVYYLARMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDV ADP+AL A S QA +GMPE +ILAQ V Y+A APKS S
Sbjct: 292 KFIARRIMICASEDVSNADPMALVVATSAAQAVERIGMPEAQIILAQAVTYVASAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ A + ++ ++ VP HL++A K ++G+G GY Y D P+ +Q +LP
Sbjct: 352 AVTAISEAMETVKNTM--TAPVPPHLQDAHYKSSSKLGHGVGYKYAHDYPNHYVEQQYLP 409
Query: 540 PSLEGYKFLDWPKSNTTDK 558
L G KF P N +K
Sbjct: 410 DGLTGRKFY-RPSENGYEK 427
>gi|423107585|ref|ZP_17095280.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5243]
gi|423113528|ref|ZP_17101219.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5245]
gi|376387797|gb|EHT00500.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5243]
gi|376388214|gb|EHT00914.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5245]
Length = 447
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A+ D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTSDDIEQVLNQAMSDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A V +VE E G
Sbjct: 188 QNIVLPDETRKAIADLVNGDARRALNTLEMMADMAETDASGNRVLQVELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQAYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 EEMAQTRY 415
>gi|358638182|dbj|BAL25479.1| recombination factor protein [Azoarcus sp. KH32C]
Length = 442
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 195/434 (44%), Positives = 259/434 (59%), Gaps = 37/434 (8%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D +L P PL+E MRP + DV GQ HL+ P LR A S +L S+I WGPPG GK
Sbjct: 3 DLFDSLQPPRVPLAELMRPARLEDVAGQRHLVGPGKPLRLAFESGKLHSMILWGPPGVGK 62
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TTLA+ + A F+ +SAV SGVK++R+AV A+ + + ++T+LFVDEVHRFNK
Sbjct: 63 TTLARLMAQ--AFDADFIAVSAVLSGVKEIREAVSQAQAAKAR-GRQTILFVDEVHRFNK 119
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQD+FLP +E G + FIGATTENPSF + + LLSR V L PL D+ L +RA
Sbjct: 120 AQQDAFLPYVEQGLLTFIGATTENPSFEVNSALLSRAAVYVLEPLGQDDMIGLFERA--- 176
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+++ + + A E + DGDAR +N +E I A
Sbjct: 177 ------RALACPTLVFDEQARERMVGFADGDARRLMNLVEQVQIAA-------------- 216
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
E+ G +P VT + EA K +D+ GE Y+ ISALHKS+RG++ DAA+YWL
Sbjct: 217 --ETAGVNP----VTPEFVDEALSTKLRRFDKGGEAFYDQISALHKSVRGSNPDAALYWL 270
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG LY+ RRLVR A ED+GLADP AL A++ LG PE + LAQ
Sbjct: 271 CRMLDGGADALYLGRRLVRMAVEDIGLADPRALELALNACTTYERLGSPEGELALAQATV 330
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
+LA A KS ++Y A AA+K + V + VPLHLRNAPTKLMK++GYGK Y Y D+P
Sbjct: 331 FLACAAKSNAVYNAYNAARKFVAGDVSRP--VPLHLRNAPTKLMKQLGYGKTYRYAHDEP 388
Query: 532 ---SAKQSFLPPSL 542
+A +S+LP +
Sbjct: 389 EAYAAGESYLPDGM 402
>gi|319776484|ref|YP_004138972.1| ATPase [Haemophilus influenzae F3047]
gi|319897261|ref|YP_004135456.1| atpase [Haemophilus influenzae F3031]
gi|317432765|emb|CBY81130.1| predicted ATPase [Haemophilus influenzae F3031]
gi|317451075|emb|CBY87308.1| predicted ATPase [Haemophilus influenzae F3047]
Length = 446
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ S+++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-SDRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L+ ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLRTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
L+ ++
Sbjct: 407 LELKDTQY 414
>gi|423119499|ref|ZP_17107183.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5246]
gi|376398153|gb|EHT10780.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5246]
Length = 447
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 259/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSSEDIEHVLTQAMNDKDRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + + +GDAR ALN LE+ A A V + E E G
Sbjct: 188 QNIVLPDDTRQAIAGLVNGDARRALNTLEMMADMAETDASGNRVLKAELLTEISGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPT+LMKE+GYG+ Y Y D+P +A +++ P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTRLMKEMGYGQEYRYAHDEPNAYAAGEAYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|410085385|ref|ZP_11282104.1| Holliday junction DNA helicase [Morganella morganii SC01]
gi|409768094|gb|EKN52158.1| Holliday junction DNA helicase [Morganella morganii SC01]
Length = 447
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 264/430 (61%), Gaps = 30/430 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP + +GQ HLL+ L A+ + +L S+I WGPPGTGKTTLA+ I +
Sbjct: 13 YQPLAARMRPGTLEQYIGQTHLLAEGKPLPRAIRAGQLHSMILWGPPGTGKTTLAEVIGH 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ LSAVTSGVK++R+A+E AR+ R +RT+LFVDEVHRFNKSQQD+FLP
Sbjct: 73 YADADIE--RLSAVTSGVKEIREAIERARQNR-NLGRRTILFVDEVHRFNKSQQDAFLPH 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDG++ FIGATTENPSF L + LLSR RV L L P D+E +L +A++D GL
Sbjct: 130 IEDGTVTFIGATTENPSFELNSALLSRARVYLLKSLSPEDIEAVLIQALNDSERGL---- 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG + + + + L GDAR +LN LE+ A A E +DG
Sbjct: 186 GGQNIVLPDETRKLLAELVAGDARRSLNVLEMMADMA--------------ETGADGKR- 230
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T + KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G
Sbjct: 231 ---VLTTELLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGD 287
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS
Sbjct: 288 PLYVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSN 347
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + +E G++ VP HLRN PTKLMKE+G GK Y Y D+ +A + +
Sbjct: 348 AVYTAFKAAMRDAKE--GRDYDVPEHLRNVPTKLMKEMGLGKEYRYAHDETNAYAAGEVY 405
Query: 538 LPPSLEGYKF 547
PP + ++
Sbjct: 406 FPPEMRDTRY 415
>gi|389878462|ref|YP_006372027.1| recombination factor protein RarA [Tistrella mobilis KA081020-065]
gi|388529246|gb|AFK54443.1| recombination factor protein RarA [Tistrella mobilis KA081020-065]
Length = 445
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/412 (45%), Positives = 250/412 (60%), Gaps = 39/412 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP I ++VGQDHL P+ + V + RL S+I WGPPGTGKTTLA+ +
Sbjct: 12 PLADRLRPGRIGEIVGQDHLFGPDGPVTRMVQAKRLASLILWGPPGTGKTTLARLLAE-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F LSAV S V D+R A +A LR + ++T+LFVDE+HRFN++QQDSFLP +E
Sbjct: 70 ATGMRFAALSAVFSTVADLRKAFAEAAALR-DTGRQTLLFVDEIHRFNRAQQDSFLPYVE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ IGATTENPSF L LLSR +VL L L + LL RA ++ G
Sbjct: 129 DGTVTLIGATTENPSFELNGALLSRTQVLVLRRLDEAALGELLIRA---------EAAEG 179
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALN-ALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ V+ +A L DGD R LN A + A+ R+ + ++
Sbjct: 180 RPLPVDDEARAVLVGMADGDGRFLLNLADTLYALPEGERLDTVRLGQL------------ 227
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
Q + YD+A E HYNLISALHKS+RG+D DAA+YW ARML+GGE P
Sbjct: 228 ------------LQRRLPLYDKAQEGHYNLISALHKSLRGSDVDAALYWFARMLDGGEDP 275
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ RRL+RFA ED+G+ADP A+ QA++ +A LG PE + +AQ V YLA APKS
Sbjct: 276 LYVVRRLIRFAVEDIGMADPRAVEQALAAQRAYETLGSPEGELAIAQAVVYLATAPKSNG 335
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
+Y A A+++ +E+ P+H+ NAPTKLMK++GYG GY Y D P A
Sbjct: 336 VYMAYKTARRLAKETGSLMP--PMHILNAPTKLMKQLGYGHGYDYDHDAPDA 385
>gi|377820088|ref|YP_004976459.1| AAA ATPase [Burkholderia sp. YI23]
gi|357934923|gb|AET88482.1| AAA ATPase central domain protein [Burkholderia sp. YI23]
Length = 486
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 192/423 (45%), Positives = 262/423 (61%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP I+DV+GQ HLL P+ LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 58 PLAERLRPRTIDDVIGQKHLLGPSKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 115
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 116 AFHAQFISLSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 174
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L +++ LL+RA +K +GG
Sbjct: 175 SGLFVFVGATTENPSFEVNSALLSRAAVYVLRSLDADELKELLERA--------TKELGG 226
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A AA Q+ ++D +
Sbjct: 227 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAAA------------QQKQTDVDGALL 272
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ + +D+ G+ Y+ ISALHKS+RG++ DAA+YW RML+GG P
Sbjct: 273 GSALAENLRR--------FDKGGDAFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPR 324
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A + + LG PE + LAQ + YLA+APKS +
Sbjct: 325 YMARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPEGELALAQALVYLAVAPKSNAG 384
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + S Q+ GVP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 385 YNAYNEARRFV--SKDQSRGVPVHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLP 442
Query: 540 PSL 542
+
Sbjct: 443 DGM 445
>gi|170691962|ref|ZP_02883126.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
gi|170143246|gb|EDT11410.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
Length = 480
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 259/423 (61%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 53 PLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 110
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 111 AFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 169
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L ++ LL+RA + +GG
Sbjct: 170 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLDEDELRELLERA--------QRELGG 221
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A AA ++ E DG
Sbjct: 222 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAAAQ----------QKTTEIDGALLGS 269
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG+ D A+YW RML+GG P
Sbjct: 270 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPR 319
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 320 YLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAG 379
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + S ++ GVP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 380 YNAYNEARRFV--SKDKSRGVPVHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLP 437
Query: 540 PSL 542
++
Sbjct: 438 ENM 440
>gi|75675584|ref|YP_318005.1| recombination factor protein RarA [Nitrobacter winogradskyi Nb-255]
gi|74420454|gb|ABA04653.1| Recombination protein MgsA [Nitrobacter winogradskyi Nb-255]
Length = 443
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 206/453 (45%), Positives = 267/453 (58%), Gaps = 44/453 (9%)
Query: 106 KTRHDVDSTTAL-----HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
K +HD S A PH PL +R+RP ++DVVGQDH+L P+ L + + L S
Sbjct: 4 KRQHDSRSLFAAAGLERDAPH-PLPDRLRPQMLSDVVGQDHILGPDGALTRMLETRTLGS 62
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+IFWGPPGTGKTT+A+ + ++ A+ F LSAV SGV D++ A E AR R +S T+
Sbjct: 63 LIFWGPPGTGKTTVARLLADATAL--HFEQLSAVFSGVNDLKKAFEAARARR-ESGTGTL 119
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LFVDEVHRFN++QQDSFLPV+EDG++V +GATTENPSF L LLSR RVL L
Sbjct: 120 LFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDALA 179
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
VE L RA + V G + ++ +A L DGD R AL +E
Sbjct: 180 VEKLFVRA---------EEVEGKPLPLDAEARAALVRMADGDGRAALTLVE--------- 221
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR 400
EV +E E + + Q + YD++ + HYNLISALHKS+R
Sbjct: 222 ----EVWRSAREGE---------VFDAGQLQGVLQRRAPIYDKSADGHYNLISALHKSVR 268
Query: 401 GNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMP 460
G+D DAA+Y+LARM+E GE PL++ARR+VR A ED+GLADP AL + A FLG P
Sbjct: 269 GSDPDAALYYLARMIEAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKDAYDFLGSP 328
Query: 461 ECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGY 520
E + +AQ V YLA APKS + Y+A GAA +V +++ + P H+ NAPTKLMK GY
Sbjct: 329 EGELAIAQAVIYLATAPKSNAAYKAFGAAMRVAKDA--GSLLPPKHILNAPTKLMKSEGY 386
Query: 521 GKGYIYTPDDPSA--KQSFLPPSLEGYKFLDWP 551
G GY Y D P A Q + P +L F D P
Sbjct: 387 GGGYQYDHDMPDAFSGQDYFPETLGRQTFYDPP 419
>gi|241948511|ref|XP_002416978.1| DNA-dependent ATPase (MGS1), putative; homolog of human Werner
helicase interacting protein (WHIP), putative [Candida
dubliniensis CD36]
gi|223640316|emb|CAX44566.1| DNA-dependent ATPase (MGS1), putative [Candida dubliniensis CD36]
Length = 677
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 279/479 (58%), Gaps = 22/479 (4%)
Query: 76 QTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNIND 135
Q KP AN ++E + +E S K+ K +++ ++ PL+ R+RP +++D
Sbjct: 130 QEKP---LANGIEETKSQKE---SKFLKKAKEINELKRQASI-----PLAHRLRPKSLDD 178
Query: 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195
GQ+ L+ N LR+ + ++ +PS + WG PG GKT+LA+ I + S KFV LS +
Sbjct: 179 FFGQEKLVGKNGALRNIIQADIIPSFLLWGVPGIGKTSLARIIAKTT--SCKFVELSGID 236
Query: 196 SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTEN 255
S K +++ A + S +RT+LF+DE+HRFNK+ QD LPVIE G++ IGATTEN
Sbjct: 237 SNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEKGTLTVIGATTEN 296
Query: 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFL 315
PSF+L LLSR + PL + +L RA+ +VN G + + DA ++
Sbjct: 297 PSFNLNNALLSRMHTFVMEPLNVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYI 356
Query: 316 CSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375
C GD+RVALN LE T + ++ K + D+ V V+ D K +
Sbjct: 357 AELCMGDSRVALNILE----TINAYLSAEKFKNTDSTDDEQTKKQGVIKVSADLLKPLMK 412
Query: 376 CK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFAS 433
+ H YDR G+ HY++ISA HKS+RG+D +AA+++L +ML GGE PL+I RR++ AS
Sbjct: 413 SRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNAAMFYLVKMLSGGEDPLFIMRRMIVIAS 472
Query: 434 EDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVI 493
ED+GL D L ++ +A F+GMPE +ILA C LALAPKS YRAL AQ +I
Sbjct: 473 EDIGLRDSSCLPFVIAAKEALEFVGMPEGEIILAHCANKLALAPKSTKSYRALRTAQSII 532
Query: 494 RESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPPSLEGYKFLD 549
+E+ + VPLHLRNAPTKLMK++GYG Y Y P + K Q + P ++ K L+
Sbjct: 533 KENPDLTKLPVPLHLRNAPTKLMKDLGYGDKYKYNPQYENGKVHQGYFPDGMDPLKLLE 591
>gi|440737696|ref|ZP_20917257.1| recombination factor protein RarA [Pseudomonas fluorescens
BRIP34879]
gi|447917230|ref|YP_007397798.1| recombination factor protein RarA [Pseudomonas poae RE*1-1-14]
gi|440381821|gb|ELQ18337.1| recombination factor protein RarA [Pseudomonas fluorescens
BRIP34879]
gi|445201093|gb|AGE26302.1| recombination factor protein RarA [Pseudomonas poae RE*1-1-14]
Length = 440
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL+RA+ G K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDAAAMQKLLQRAL-----GEEKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V+ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSVSDEGFQILLTAADGDGRRFLNLLENASDLA-----------------EDGSEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VP+HLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPMHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|393787747|ref|ZP_10375879.1| hypothetical protein HMPREF1068_02159 [Bacteroides nordii
CL02T12C05]
gi|392658982|gb|EIY52612.1| hypothetical protein HMPREF1068_02159 [Bacteroides nordii
CL02T12C05]
Length = 425
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 200/439 (45%), Positives = 268/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAI--ATDTILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+E+ S GDAR LN LE+ VE E E
Sbjct: 176 RRIELKETNAMLRFSG--GDARKLLNILELV---------------VESETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VIITDEIVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C+ A LG PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLIANACFDALMKLGWPEGRIPLAEATIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALAMVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P+ N ++
Sbjct: 391 ELKDRRI--WQPQHNAAEQ 407
>gi|388468239|ref|ZP_10142449.1| recombination factor protein RarA [Pseudomonas synxantha BG33R]
gi|388011819|gb|EIK73006.1| recombination factor protein RarA [Pseudomonas synxantha BG33R]
Length = 440
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 266/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL+RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLQRALNE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V+ + L + DGD R LN LE ++ A DG V
Sbjct: 185 RHLSVSEEGFRILLTAADGDGRRFLNLLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VP+HLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPMHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P +LE
Sbjct: 399 FPDALE 404
>gi|302185003|ref|ZP_07261676.1| recombination factor protein RarA [Pseudomonas syringae pv.
syringae 642]
Length = 440
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLAK ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAK-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGT 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG +
Sbjct: 185 RQLTLSDEGFAMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 GLLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDDLE 404
>gi|218130825|ref|ZP_03459629.1| hypothetical protein BACEGG_02420 [Bacteroides eggerthii DSM 20697]
gi|217987169|gb|EEC53500.1| ATPase, AAA family [Bacteroides eggerthii DSM 20697]
Length = 423
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 197/444 (44%), Positives = 266/444 (59%), Gaps = 47/444 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RAV
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQRAVT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V++ IE + GDAR LN L++ +S+
Sbjct: 169 TDVQLKERQIELRETTAMLRYSGGDARKLLNILDLVV-------------------QSEA 209
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
P V +T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 210 GDPVV--ITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISASEDIGLANPNALLLANACFDTIMKVGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++R++ N VPLHLRNAPT+LMK++GYG Y Y D P +Q
Sbjct: 328 KSNSAYMAINDALSLVRQT--GNLPVPLHLRNAPTQLMKQLGYGDNYKYAHDYPGNFVRQ 385
Query: 536 SFLPPSLEGYKFLDW-PKSNTTDK 558
FLP L+ ++ W P+ N ++
Sbjct: 386 QFLPDDLKDHRI--WQPQDNPAEQ 407
>gi|88812897|ref|ZP_01128141.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
gi|88789819|gb|EAR20942.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
Length = 435
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 261/428 (60%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + + VGQ HLL LR + + R S++FWGPPGTGKTTLA+ I
Sbjct: 7 PLADRMRPRLLTEFVGQSHLLDAGKPLREVIEAGRPHSMVFWGPPGTGKTTLARLIAE-- 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV +GVK++R A + R + ++T+LFVDEVHRFNK+QQD+FLP IE
Sbjct: 65 ATEAEFLALSAVMAGVKEIRQASATGQANRAR-GRQTILFVDEVHRFNKAQQDAFLPFIE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++VFIGATTENPSF L LLSR R L PL + ++ A++D GL G
Sbjct: 124 DGTVVFIGATTENPSFELNNALLSRLRTYVLRPLGEAALARIIDCALEDSERGL----GT 179
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ A L DGDAR AL+ LE++A +A
Sbjct: 180 KQLALSEQARSLLIQAADGDARSALSLLEVAADLSAAE---------------------- 217
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A + +D + A +D+ GE Y+ ISALHK++RG+ DAA+YWL RML GG PL
Sbjct: 218 ARIDIDLIRAAAAGGRARFDKRGEAFYDEISALHKAVRGSAPDAALYWLCRMLAGGCDPL 277
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+R ASED+G ADP L A++ +QA LG PE + +AQ V YLA PKS ++
Sbjct: 278 YLARRLLRMASEDIGNADPRGLQVALNAWQAQERLGSPEGELAIAQAVVYLASVPKSDAV 337
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A + +R S G E VPL LRNAPT+L++E+GYG+GY Y D+P +A + P
Sbjct: 338 YRAYRLAAEDVR-SHGSLE-VPLALRNAPTRLLRELGYGRGYRYAHDEPEGYAAGAEYFP 395
Query: 540 PSLEGYKF 547
L G ++
Sbjct: 396 AELIGTRY 403
>gi|402312075|ref|ZP_10831005.1| MgsA AAA+ ATPase, C-terminal domain protein [Lachnospiraceae
bacterium ICM7]
gi|404482209|ref|ZP_11017436.1| hypothetical protein HMPREF1135_00496 [Clostridiales bacterium
OBRC5-5]
gi|400370736|gb|EJP23718.1| MgsA AAA+ ATPase, C-terminal domain protein [Lachnospiraceae
bacterium ICM7]
gi|404344370|gb|EJZ70727.1| hypothetical protein HMPREF1135_00496 [Clostridiales bacterium
OBRC5-5]
Length = 440
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 183/431 (42%), Positives = 267/431 (61%), Gaps = 28/431 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP +++ +VGQ+H+LS + L A+ +++L SIIF+GPPG GKTT+AK I N+
Sbjct: 16 APLASRLRPDSLDSIVGQEHILSKDKFLYRAIKADKLSSIIFFGPPGCGKTTIAKIIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
++K ++A T+G K++ +A+ +A+ K+T+LF+DE+HRFNKSQQD LP +
Sbjct: 76 TKSNFK--QINATTAGKKEMEEAISEAKISFSMYKKKTILFIDEIHRFNKSQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR R+L L PL D+E +L RA+ D G+ G
Sbjct: 134 EDGTVILIGATTENPFFEVNKALISRSRLLELKPLSYQDIETILDRAIKDKERGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
VE++ +A+EFL + DGDAR ALNALE++ +T + DG
Sbjct: 190 RYEVEISKEAVEFLSKSADGDARSALNALELAILTTDI--------------SEDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ + E Q K + YD+ G HY+ ISA KSMRG+D DA +Y+LA+ML GE
Sbjct: 235 ---IDTNIVSECIQKKIVKYDKDGTNHYDTISAFIKSMRGSDPDAVMYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ A+EDVGLADP AL+ A + + A +GMPE +ILAQ Y+A APKS +
Sbjct: 292 KFIARRIIICAAEDVGLADPNALSIATNAFLAIERVGMPEARIILAQAANYIACAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
Y A+ A + ++E+ + VP H+RNA K+IG G GY Y D + KQ +LP
Sbjct: 352 SYLAINEALRFVKEN--SDFEVPKHIRNANFTGEKDIGIGVGYKYAHDYENHYVKQQYLP 409
Query: 540 PSLEGYKFLDW 550
++ F +
Sbjct: 410 DEIKDKVFFNL 420
>gi|330925922|ref|XP_003301253.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1]
gi|311324199|gb|EFQ90653.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1]
Length = 535
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 186/429 (43%), Positives = 264/429 (61%), Gaps = 37/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP++++ V GQ+ L+ P +LR+ V RLPS++ WG PGTGKTT+A+ I N+
Sbjct: 119 PLAERMRPMSLDHVHGQE-LVGPKGMLRAMVAEGRLPSMVLWGRPGTGKTTIARLIANTS 177
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+FV +++ ++ ++ VR +A + + ++T++F DE+HRF+K+QQD+FL +E
Sbjct: 178 GS--RFVEINSTSTRLEQVRAIFAEASQDLRLTGRKTIVFCDELHRFSKTQQDAFLGPVE 235
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I I ATTENPSF +I+ LLSRCR TL+ LK D+ +L+RA+ N
Sbjct: 236 SGTITLIAATTENPSFKIISALLSRCRTFTLDDLKEDDLVQILERAMAAEN--------C 287
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T ++ + + DGDAR ALN LE++ A KE +++Q
Sbjct: 288 TSPILDKSMLAYFARFSDGDARTALNLLELAMSLANQADMTKE--KIQQS---------- 335
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
K L YDRAG++HY+ ISALHKS+RG+D +A++Y+LARMLE GE P
Sbjct: 336 ------------LTKTLVYDRAGDQHYDSISALHKSIRGSDPNASLYYLARMLESGEDPR 383
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL+ ASEDVGLAD L+ A + Y AC +GMPEC + LA V L LAPKS +
Sbjct: 384 YIARRLIVVASEDVGLADNSMLSLATATYAACETIGMPECRINLAHAVTALTLAPKSTRV 443
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
YR L A ++E + +P H+RNAPTKL+K++GYG GY Y P+ D KQ +LP
Sbjct: 444 YRGLNNAIDAVKEPGMASLPIPHHIRNAPTKLLKDLGYGDGYKYNPNYLDGKVKQEYLPE 503
Query: 541 SLEGYKFLD 549
+L G L+
Sbjct: 504 ALRGRLLLE 512
>gi|321496490|gb|EAQ37959.2| ATPase family associated with various cellular activities (AAA)
[Dokdonia donghaensis MED134]
Length = 426
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/441 (43%), Positives = 267/441 (60%), Gaps = 36/441 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP + D + Q HL+ N L+ A+ + +PS+I WGPPG GKTTLA I
Sbjct: 3 NTPLAERLRPKKLEDYLSQHHLVGENGSLQQALKAGIIPSLILWGPPGIGKTTLATIIAE 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F LSA+ SGVKD+R+ ++ A++ + + K +LF+DE+HRF+KSQQDS L
Sbjct: 63 ES--KRPFYTLSAINSGVKDIREVIDKAKQSGGLFTQKNPILFIDEIHRFSKSQQDSLLG 120
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + +GATTENPSF +I LLSRC+V L P + D+ +LL RA++ + + K
Sbjct: 121 AVERGWVTLVGATTENPSFEVIPALLSRCQVYILKPFEKKDLILLLNRAIN--TDEILKK 178
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
T +E E L GDAR LN E+ T E++ D
Sbjct: 179 KNITLLET-----EALLRLSGGDARKLLNIFELIVTT---------------ENDKD--- 215
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+VT D Q + YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 216 ---VVVTNDMVLSKVQQNIVRYDKTGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGE 272
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARRL+ A+ED+G A+P AL A +C+QA +G PE +IL+QCV YLA +PKS
Sbjct: 273 DVKFIARRLIIAAAEDIGNANPTALVIANNCFQAVTTIGYPEARIILSQCVTYLASSPKS 332
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y A+G AQ++++++ + VPL LRNAPTKLMKEIGYG Y Y+ D P +Q F
Sbjct: 333 NAAYMAIGKAQQLVKQT--GDLSVPLPLRNAPTKLMKEIGYGNDYKYSHDYPGNFVQQEF 390
Query: 538 LPPSLEGYKFLDWPKSNTTDK 558
LP + G + P NT +K
Sbjct: 391 LPKEISGTTLYE-PTDNTREK 410
>gi|94499677|ref|ZP_01306214.1| hypothetical protein RED65_01550 [Bermanella marisrubri]
gi|94428431|gb|EAT13404.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
Length = 443
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 263/422 (62%), Gaps = 33/422 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R RP ++D GQ HLL+ LR + S RL S+IFWGPPG GKTTLA + N
Sbjct: 12 YQPLASRTRPQTLDDYAGQKHLLADGKPLRKVIESGRLHSMIFWGPPGVGKTTLAMILAN 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V +F+ +SAV GVK++R AV+ AR + + ++ ++LFVDEVHRFNKSQQD+FLP
Sbjct: 72 YVNA--QFISVSAVMDGVKEIRAAVDKAR-MAQQQDRPSLLFVDEVHRFNKSQQDAFLPY 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+ +FIGATTENPSF L + LLSR RV L L+ D+ LL+ AV + +
Sbjct: 129 VEDGTFIFIGATTENPSFELNSALLSRARVYKLRSLEHDDIRQLLEHAVR-----TDQQL 183
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++ + A++ L DGDAR ALN LE++A Q + S+
Sbjct: 184 NSIGLQFENGALDRLVRVADGDARTALNLLELAAGLC-------------QAESSN---- 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T + E Q +D+ G+ Y ISALHK++RG+ D A+YW RML+GG
Sbjct: 227 ---VITENVVAEISQESLRRFDKGGDVFYEQISALHKAVRGSSPDGAMYWFVRMLDGGCD 283
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P YIARR+VR ASED+G ADP AL+ A++ +QA LG PE +++AQ ++YLA APKS
Sbjct: 284 PKYIARRVVRMASEDIGNADPRALDLAMNAWQAYERLGSPEGELVIAQAISYLACAPKSN 343
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A++++ ES VP HLRNAPT+LMK+ GYG Y Y D+P +A +++
Sbjct: 344 AVYNAYNQARRLVAESPSYE--VPEHLRNAPTQLMKQEGYGAEYRYAHDEPEAYAAGENY 401
Query: 538 LP 539
LP
Sbjct: 402 LP 403
>gi|375108621|ref|ZP_09754875.1| recombination factor protein RarA [Alishewanella jeotgali KCTC
22429]
gi|374570807|gb|EHR41936.1| recombination factor protein RarA [Alishewanella jeotgali KCTC
22429]
Length = 449
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 263/423 (62%), Gaps = 33/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D VGQ HLL+ S L+ A+ + R+ S+I WGPPGTGKTTLA+ I
Sbjct: 14 PLAARLRPRQLADYVGQQHLLAAGSPLQQAILAGRVHSLILWGPPGTGKTTLAELIAGHA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVT+G+K++RD+++ A+ + + +RT+LFVDEVHRFNK+QQD+FLP IE
Sbjct: 74 QAQMQ--RLSAVTAGIKEIRDSIQQAKLHQQQYQQRTLLFVDEVHRFNKAQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+I+FIGATTENP+F L +LSR RV L PL D++ +L RA+ D GL G
Sbjct: 132 NGTIIFIGATTENPAFALNNAILSRARVCVLKPLTEADLQQVLARALTDAELGL----GA 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + A + L +GDAR LN LE A AA P E
Sbjct: 188 QQLTLEPAAEQLLLRLANGDARRLLNLLEQLAELAA---PQSE----------------- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T+ ++ + +DR G+ Y+LISALHKS+RG+D DAA+YW AR+L GG PL
Sbjct: 228 --LTVAQVQQIVPQQLPGFDRDGDLFYDLISALHKSVRGSDPDAALYWFARILAGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP AL A++ + +G E +AQ + YLALAPKS ++
Sbjct: 286 YVARRLLAIASEDIGNADPRALTLALNAWDTFSRVGPAEGERAIAQALVYLALAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+ ++ E + VPLHLRNAPT L +++G+G GY Y D+P +A + +LP
Sbjct: 346 YLAFNQAKALVAERP--DYPVPLHLRNAPTALQQQLGHGAGYRYAHDEPGAYAAGERYLP 403
Query: 540 PSL 542
P L
Sbjct: 404 PEL 406
>gi|443470778|ref|ZP_21060861.1| Holliday junction DNA helicase [Pseudomonas pseudoalcaligenes
KF707]
gi|442900548|gb|ELS26690.1| Holliday junction DNA helicase [Pseudomonas pseudoalcaligenes
KF707]
Length = 441
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/432 (44%), Positives = 260/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQDHLL+P LR A+ L S+IFWGPPG GKTTLAK +
Sbjct: 12 PLAARLRAASLDEYVGQDHLLAPGKPLREALEQGALHSMIFWGPPGVGKTTLAKLLAQ-- 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV SGVK++R +VE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 70 VTDAHFETISAVLSGVKEIRQSVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDESALRKLVNRALTE-----DKGLGR 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ L S DGD R LN LE +A A DG
Sbjct: 185 RNLSLPEESFSILMSAADGDGRRLLNLLENAADLA-----------------EDGGELSA 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG+D DAA+YW ARML+GG
Sbjct: 228 GLLQNLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSDPDAALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y + + + + VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVY--MAFKAAMADAAANGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKFLD 549
P +E ++ D
Sbjct: 399 FPEGMEPRRYYD 410
>gi|328543386|ref|YP_004303495.1| ATPase AAA [Polymorphum gilvum SL003B-26A1]
gi|326413131|gb|ADZ70194.1| ATPase, AAA family protein [Polymorphum gilvum SL003B-26A1]
Length = 436
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 195/433 (45%), Positives = 252/433 (58%), Gaps = 42/433 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + DVVGQDHLL P L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 17 PLADRLRPRRLEDVVGQDHLLGPEGTLSRMLKTRTLGSLIFWGPPGTGKTTIARLLAD-- 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SA+ SGV D++ E AR R+ + T+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 75 ATDLAFEQISAIFSGVADLKKVFETARARRM-GGRGTLLFVDEIHRFNRAQQDSFLPVME 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I +GATTENPSF L LLSR V+T +PL +E LL+RA ++ G
Sbjct: 134 DGTITLVGATTENPSFELNAALLSRSHVMTFHPLNAAALERLLERA---------ETEEG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + +A L DGD R AL E +V E E
Sbjct: 185 KALPLTDEARAVLIRMADGDGRSALTLAE-------------DVWRAAGEGEVFDAERLQ 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
A+V Q + YD++ + HYNLISALHKS+RG+D DAA+YW RML+GGE P+
Sbjct: 232 AIV---------QRRAPIYDKSQDGHYNLISALHKSVRGSDPDAALYWFCRMLDGGEDPM 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+R A ED+GL DP AL QA A LG PE + LAQCV YLA APKS +
Sbjct: 283 YLARRLIRMAVEDIGLGDPHALVQANGARDAYQMLGSPEGELALAQCVVYLATAPKSNGV 342
Query: 483 YRALGAAQKVIRESVGQNEGV--PLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
Y A AA + R N + P H+ NAPTKLMK GYG+GY Y D P + Q +
Sbjct: 343 YVAFKAAMRAAR----SNGSLLPPKHILNAPTKLMKTEGYGEGYQYDHDAPEGFSGQDYF 398
Query: 539 PPSLEGYKFLDWP 551
P ++ F D P
Sbjct: 399 PEAMGRMTFYDPP 411
>gi|89092932|ref|ZP_01165884.1| ATPase, AAA family protein [Neptuniibacter caesariensis]
gi|89082957|gb|EAR62177.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
Length = 452
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 258/425 (60%), Gaps = 29/425 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ +MRP ++ + GQ HLL + LR+A+ S+IFWGPPG GKTTLAK I +
Sbjct: 10 YEPLAAKMRPQSLAEYCGQAHLLGRDKPLRTALEQGSAHSMIFWGPPGVGKTTLAKLIAH 69
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
V F+ LSAV SGVKD+R AVE A++ ++ ++T+LFVDEVHRFNKSQQD+FLP
Sbjct: 70 HVDA--HFLTLSAVLSGVKDIRVAVEQAKQHSAQTGRKTILFVDEVHRFNKSQQDAFLPY 127
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDG+I+F+GATTENPSF L LLSR RV L L+ D+ +L RA+DD G
Sbjct: 128 IEDGTIIFVGATTENPSFELNNALLSRARVYLLRSLEATDILNVLNRALDDQERG----Y 183
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++ ++ + + L DGDAR +LN LEI+A A V+Q+D S+
Sbjct: 184 GQRKLNISDEMLNRLAQAADGDARRSLNLLEIAADLA-----------VKQDDGSE---- 228
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ +E YD+ G+ Y++ISA HKS+RG+ D A+YW RML+GG
Sbjct: 229 ---LINESVLEEVLSSTGRRYDKQGDLFYDMISAFHKSVRGSSPDGALYWYCRMLDGGCD 285
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRLV ASED+G ADP A+ A+S + A +G E +AQ Y A APKS
Sbjct: 286 PLYVARRLVAIASEDIGNADPRAMQVAISAWDAFERVGPAEGERAIAQAAVYCACAPKSN 345
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT---PDDPSAKQSF 537
++Y A ++ VP+HL NAPT LMKE+GYG Y Y PD +A +++
Sbjct: 346 ALYMAFNQCLAAVKSQPSFE--VPVHLINAPTSLMKEMGYGDEYRYAHNEPDAYAAGENY 403
Query: 538 LPPSL 542
LPP +
Sbjct: 404 LPPEI 408
>gi|417842778|ref|ZP_12488858.1| Replication-associated recombination protein A [Haemophilus
haemolyticus M21127]
gi|341950939|gb|EGT77520.1| Replication-associated recombination protein A [Haemophilus
haemolyticus M21127]
Length = 446
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGSYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDSQY 414
>gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium gilvum Spyr1]
gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium gilvum Spyr1]
Length = 446
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 262/427 (61%), Gaps = 34/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++VVGQDHLL PNS LR + + S+I +GPPGTGKTTLA I S
Sbjct: 25 PLAVRMRPANLDEVVGQDHLLKPNSPLRRLIEGSGAASVILYGPPGTGKTTLASMI--SQ 82
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F LSA+ +GVK+VR ++ AR+ V+ ++TVLF+DEVHRF+K+QQD+ L +E
Sbjct: 83 ATGRRFEALSALAAGVKEVRAVIDVARQAAVR-GEQTVLFIDEVHRFSKTQQDALLAAVE 141
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+ ++ + ATTENPSF ++ PLLSR +L L PL P DV +++RA+ D GL G
Sbjct: 142 NRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLTPADVTTVIRRAITD-ERGL-----G 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV V+ DAIE L GDAR AL ALE++ T V E E
Sbjct: 196 GRVTVSDDAIEQLVLLSAGDARRALTALEVATET------VSESGET------------- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT++ +++ L YDR G++HY+++SA KS+RG+D DAA+++LARML GE P
Sbjct: 237 --VTVEVIEQSLDKAALRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARRL+ ASED+G+ADP AL AV+ Q +GMPE + LAQ +LA APKS ++
Sbjct: 295 FVARRLMILASEDIGMADPTALQIAVAAAQTVQLIGMPEAQLTLAQATVHLATAPKSNAV 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
ALGAA IR G+ VP HLR+ +++G GY Y D P A Q + P
Sbjct: 355 TTALGAAMADIR--AGKAGQVPAHLRDGHYSGAQKLGNAVGYKYAHDHPGGVASQQYPPD 412
Query: 541 SLEGYKF 547
L G +
Sbjct: 413 ELVGTDY 419
>gi|409427913|ref|ZP_11262398.1| recombination factor protein RarA [Pseudomonas sp. HYS]
Length = 441
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 264/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ + L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPANLDEYVGQEHLLARGKPLREALEAGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AV+ A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRHAVDIAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALSE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V +A + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLRVGDEAFQMLMAAADGDGRRMLNFLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P +LE
Sbjct: 399 FPDNLE 404
>gi|395801682|ref|ZP_10480937.1| recombination factor protein RarA [Flavobacterium sp. F52]
gi|395435871|gb|EJG01810.1| recombination factor protein RarA [Flavobacterium sp. F52]
Length = 425
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 187/426 (43%), Positives = 257/426 (60%), Gaps = 35/426 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ER+RP + D + Q HL+ P L + +PS+IFWGPPGTGKTTLA+ I
Sbjct: 2 EAPLAERIRPQKLEDYISQQHLVGPTGSLTQQISKGIIPSLIFWGPPGTGKTTLAQIIAQ 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F LSA+ SGVKD+RD ++ A++ + + K +LF+DE+HRF+KSQQDS L
Sbjct: 62 ES--KRPFYILSAINSGVKDIRDVIDKAKQSGGLFTAKNPILFIDEIHRFSKSQQDSLLA 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I +GATTENPSF +I LLSRC+V LN D+E LL+RA+ L+K
Sbjct: 120 AVEKGWITLVGATTENPSFEVIPALLSRCQVYILNAFTKADLEALLERAMKTDTYLLTK- 178
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
++N E L GD R LN E+ V DE
Sbjct: 179 ------KINLKETEALLRISGGDGRKLLNVFEL-------------VINASAGDE----- 214
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+T D E Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 215 ---ITITNDRVLELVQQNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARR++ ASED+G A+P AL A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 272 DVKFIARRMLILASEDIGNANPTALIMANNTFQAVTTIGYPESRIILSQCAIYLATSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
+ Y A+G AQ++++++ + VPLHLRNAPTKLMKE+GYG Y Y+ D + A+Q F
Sbjct: 332 NASYMAIGNAQQLVKQT--GDLPVPLHLRNAPTKLMKELGYGDEYKYSHDYVNNFAEQEF 389
Query: 538 LPPSLE 543
LP +++
Sbjct: 390 LPDAIK 395
>gi|238749783|ref|ZP_04611288.1| Replication-associated recombination protein A [Yersinia rohdei
ATCC 43380]
gi|238712438|gb|EEQ04651.1| Replication-associated recombination protein A [Yersinia rohdei
ATCC 43380]
Length = 444
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 266/428 (62%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ ++ +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+ D + G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSDSSRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A E +++G V
Sbjct: 185 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMA--------------ETDANG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + RE + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YTAFKAAMQDAREK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMASTRY 412
>gi|402307918|ref|ZP_10826935.1| MgsA AAA+ ATPase, C-terminal domain protein [Prevotella sp. MSX73]
gi|400377524|gb|EJP30399.1| MgsA AAA+ ATPase, C-terminal domain protein [Prevotella sp. MSX73]
Length = 428
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 192/419 (45%), Positives = 254/419 (60%), Gaps = 33/419 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D VGQ HL+ P ++LR + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERMRPRTLDDYVGQQHLVGPGAVLRRMIEGGRISSFILWGPPGVGKTTLAQIIANRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A + R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 KTP--FYTLSAVTSGVKDVREVIERAGRNRFFDSLSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL+ D+ LL+RAV + + +
Sbjct: 121 KGVVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKEDLLRLLRRAVTEDTELRKRDIRL 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T+ + L GDAR LN LE+ E+ G +P V
Sbjct: 181 TQTDA-------LLRYSGGDARKLLNILELVV-------------------EACGDAPTV 214
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T +E Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 215 E-ITDRLVEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + +G PE + LA+ YLA +PKS S
Sbjct: 274 FIARRLVISAAEDIGLANPNALLLANAAFDTVTKIGWPEGRIPLAEAAVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y + AA ++R++ N VPLHLRNAPTKLM ++GY GY Y D P Q +LP
Sbjct: 334 YLGIDAALALVRQT--GNLPVPLHLRNAPTKLMADLGYHDGYKYPHDYPGHFTPQQYLP 390
>gi|149277254|ref|ZP_01883396.1| ATPase, AAA family protein [Pedobacter sp. BAL39]
gi|149232131|gb|EDM37508.1| ATPase, AAA family protein [Pedobacter sp. BAL39]
Length = 426
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 192/438 (43%), Positives = 266/438 (60%), Gaps = 34/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++ VGQ H++ P+++LR A+ S +LPS+IFWGPPG GKTTLA I S
Sbjct: 6 PLAERMRPQSLDEYVGQQHIVGPDAVLRKALQSKQLPSMIFWGPPGVGKTTLAYII--SQ 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSA+ SGVKD+RD ++ A L+ +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 TLDRPFFNLSAINSGVKDIRDVIDRAALLKDSLMGLPILFIDEIHRFSKSQQDSLLGAVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I+ LLSRC+V L L ++ LL+ A+ K V
Sbjct: 124 RGLVTLIGATTENPSFEVISALLSRCQVYILKALDEGELSGLLQTAI-------KKDVVL 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ E L GD R LN LEI+ +G
Sbjct: 177 KTKKITIKEHEALIRLSGGDGRKLLNVLEIAI---------------------NGIGGDK 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q YD+AGE+HY++ISA KS+RG+D +AA+YWLARM+EGGE PL
Sbjct: 216 IVLTNKNVLEHAQQNLALYDKAGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGEDPL 275
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRL+ ASED+G A+P AL A +C+QA + +G PE +IL+Q V Y+A +PKS +
Sbjct: 276 FIARRLLILASEDIGNANPNALLLANNCFQAVNVIGYPESRIILSQAVTYMASSPKSNAS 335
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPP 540
Y A+ AQ +++++ N VPL +RNAPTKLMK IGYGK Y Y+ + + Q + P
Sbjct: 336 YEAINKAQALVKQT--GNLPVPLLIRNAPTKLMKNIGYGKDYQYSHGYEGNFSPQEYFPD 393
Query: 541 SLEGYKFLDWPKSNTTDK 558
L G K D K+ +K
Sbjct: 394 VLSGTKLYDPGKNPAEEK 411
>gi|148256359|ref|YP_001240944.1| recombination factor protein RarA [Bradyrhizobium sp. BTAi1]
gi|146408532|gb|ABQ37038.1| Recombination protein MgsA [Bradyrhizobium sp. BTAi1]
Length = 444
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 263/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL ER+RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 26 PLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD-- 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SAV SGV D++ V DA + R ++ + T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 84 ATELHFEQISAVFSGVADLKK-VFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVME 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL + L +E L A ++V G
Sbjct: 143 DGTVVLVGATTENPSFELNAALLSRSRVLVFHSLDAAAIERLYSNA---------EAVEG 193
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ +A L DGD R AL E EV ++DE
Sbjct: 194 RKLPLDDEARAVLIRMADGDGRAALTLAE-------------EVWRSARKDE-------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E Q + YD++ + HYNLISA+HKS+RG+D DAA+Y+ ARML+ GE PL
Sbjct: 233 -IFNAVQLQEILQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS +
Sbjct: 292 FLARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+A GAA++V +E G + P H+ NAPTKLM+ GYG GY Y D P A Q + P
Sbjct: 352 YKAFGAAKRVAKE--GGSLLPPKHILNAPTKLMQGEGYGTGYQYDHDAPDAFSGQDYFPE 409
Query: 541 SLEGYKFLDWPK 552
+L F D P+
Sbjct: 410 ALGRQHFYDPPE 421
>gi|315608969|ref|ZP_07883941.1| AAA family ATPase [Prevotella buccae ATCC 33574]
gi|315249349|gb|EFU29366.1| AAA family ATPase [Prevotella buccae ATCC 33574]
Length = 428
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 193/419 (46%), Positives = 254/419 (60%), Gaps = 33/419 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D VGQ HL+SP ++LR + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERMRPRTLDDYVGQQHLVSPGAVLRRMIEGGRISSFILWGPPGVGKTTLAQIIANRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A + R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 KTP--FYTLSAVTSGVKDVREVIERAGRNRFFDSLSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL+ D+ LL RAV + + +
Sbjct: 121 KGVVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKEDLLRLLHRAVTEDTELRKRDIRL 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T+ + L GDAR LN LE+ E+ G +P V
Sbjct: 181 TQTDA-------LLRYSGGDARKLLNILELVV-------------------EACGDAPTV 214
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T +E Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 215 E-ITDRLVEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + +G PE + LA+ YLA +PKS S
Sbjct: 274 FIARRLVISAAEDIGLANPNALLLANAAFDTVTKIGWPEGRIPLAEAAVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y + AA ++R++ N VPLHLRNAPTKLM ++GY GY Y D P Q +LP
Sbjct: 334 YLGIDAALALVRQT--GNLPVPLHLRNAPTKLMADLGYHDGYKYPHDYPGHFTPQQYLP 390
>gi|336468053|gb|EGO56216.1| hypothetical protein NEUTE1DRAFT_83275 [Neurospora tetrasperma FGSC
2508]
gi|350289703|gb|EGZ70928.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 600
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 202/462 (43%), Positives = 275/462 (59%), Gaps = 40/462 (8%)
Query: 94 REIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAV 153
RE +PSP + L R ++ +A PL+ERMRP +++DV GQD L+ PN +LR+ +
Sbjct: 138 REAQPSPPIQPLVKRTKPNNRSA------PLAERMRPGSLDDVFGQD-LVGPNGVLRALI 190
Query: 154 CSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
++R+PS+I WG GTGKTT+A+ I +F+ L+A +SGV + + +A
Sbjct: 191 ETDRVPSMILWGGSGTGKTTIARCIAQRTG--SRFIELNATSSGVAECKKYFGEAANELH 248
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTL 273
+ +RT++F DE+HRF K+QQD FL +E G+I IGATTENPSF ++ LLSRCR TL
Sbjct: 249 LTGRRTIIFCDEIHRFTKAQQDIFLKPVEAGTITLIGATTENPSFKVVPALLSRCRTFTL 308
Query: 274 NPLKPHDVEILLKRA----VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNA 329
PL D++ +L RA + D + LS + + + + +LC+ DGDAR ALN
Sbjct: 309 QPLSRDDLQRILLRALKQEITDQHLPLSPLI-------DDELLSYLCAFADGDARTALNL 361
Query: 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHY 389
LE++ P SD P ++ +A K L YDRA ++HY
Sbjct: 362 LELALSLTTTSPP------------SDN-QPLT-----KESIKASLTKTLVYDRASDQHY 403
Query: 390 NLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVS 449
+ ISA HKS+RG+D DA++Y+LARML+ GE PL+IARRLV ASEDVGLAD L A +
Sbjct: 404 DTISAFHKSIRGSDPDASLYYLARMLQSGEDPLFIARRLVVIASEDVGLADNSLLPLATA 463
Query: 450 CYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRN 509
Y A +GMPE + LA C L LAPKS YR L A +RE VPLHLRN
Sbjct: 464 TYTATQQIGMPEARIPLAHCTVALCLAPKSTRAYRGLNNAFSALREPGVAALPVPLHLRN 523
Query: 510 APTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
APT+LMKE+GYG Y Y P+ + +Q +LP L G KFL+
Sbjct: 524 APTRLMKEMGYGAEYKYPPNYRNGRVRQEYLPGELVGRKFLE 565
>gi|78047616|ref|YP_363791.1| recombination factor protein RarA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036046|emb|CAJ23737.1| putative ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 457
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 252/416 (60%), Gaps = 33/416 (7%)
Query: 117 LHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
LHV + PL+ERMRP + ++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTT
Sbjct: 15 LHVDRSAMGPLAERMRPRTLEEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTT 74
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
LA + + +K +SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK+Q
Sbjct: 75 LALLLAHYADAEFK--AISAVLSGLPEVRQVLAEAAQ-RFAGGRRTVLFVDEVHRFNKAQ 131
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAE 191
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
GL G ++V+ ++ + S DGD R AL LEI+A AA
Sbjct: 192 RGL----GAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA--------------G 233
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
E +P L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL R
Sbjct: 234 EGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTR 286
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YL
Sbjct: 287 MLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
A KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 347 ASTAKSNAGYAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQDYQYDHD 400
>gi|357384684|ref|YP_004899408.1| ATPase AAA [Pelagibacterium halotolerans B2]
gi|351593321|gb|AEQ51658.1| ATPase, AAA family [Pelagibacterium halotolerans B2]
Length = 442
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 183/419 (43%), Positives = 258/419 (61%), Gaps = 38/419 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++++V+GQ H++ P+ LR + S RL S+I WGPPGTGKTT+A+ + +
Sbjct: 23 PLADRLRPKSLDEVIGQTHIIGPDGTLRRMLASGRLGSLILWGPPGTGKTTVARLLAD-- 80
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
AV Y+F +SA+ SGV D++ E AR R ++ +RT+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 81 AVDYRFEQISAIFSGVADLKKVFETARTAR-RAGQRTLLFVDEIHRFNRAQQDSFLPVME 139
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR +VL L D++ L KRA +++ L
Sbjct: 140 DGTVVLVGATTENPSFELNAALLSRAQVLKFTSLDRDDLDALAKRAEEELGKALP----- 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ DA + L DGD R L +E E+ DE +
Sbjct: 195 ----LDDDARQTLIGLADGDGRAMLGLIE-------------EIIAATGPDEILDPAGLA 237
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LV Q + YD++ + HYNLISALHK++RG+D DAA+Y+ ARM++ GE P+
Sbjct: 238 KLV---------QRRAPIYDKSQDGHYNLISALHKTVRGSDPDAALYYFARMIDAGEDPM 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+R A ED+G+ADP AL A + A H LG PE + LA+ V YLA APKS ++
Sbjct: 289 YLARRLIRMAVEDIGMADPQALPIATAAKDAYHMLGSPEGELALAEVVVYLATAPKSNAL 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A A + +++ P+ + NAPTKLMK GYG+GYIY D P + Q + P
Sbjct: 349 YNAYNRALALAKKTGSPTP--PMAILNAPTKLMKSEGYGEGYIYDHDTPEGFSGQEYFP 405
>gi|16273484|ref|NP_439735.1| recombination factor protein RarA [Haemophilus influenzae Rd KW20]
gi|1175611|sp|P45262.1|RARA_HAEIN RecName: Full=Replication-associated recombination protein A
gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
Length = 446
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 183/429 (42%), Positives = 268/429 (62%), Gaps = 31/429 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I
Sbjct: 14 GPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQR 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ + + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP I
Sbjct: 74 INAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHI 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 131 EDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPKRGLGKE-- 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 --RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK- 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G P
Sbjct: 231 ---IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YL++APKS +
Sbjct: 288 LYVARRLLAIASEDVGNADPRAMQVALAAWDCFSRVGAYEGERAIAQAIIYLSVAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++
Sbjct: 348 VYTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYF 405
Query: 539 PPSLEGYKF 547
PP L+ ++
Sbjct: 406 PPELKDTQY 414
>gi|145641740|ref|ZP_01797316.1| formyltetrahydrofolate deformylase [Haemophilus influenzae R3021]
gi|145273554|gb|EDK13424.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.4-21]
Length = 446
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|384427899|ref|YP_005637258.1| ATPase [Xanthomonas campestris pv. raphani 756C]
gi|341937001|gb|AEL07140.1| ATPase [Xanthomonas campestris pv. raphani 756C]
Length = 456
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 198/427 (46%), Positives = 256/427 (59%), Gaps = 33/427 (7%)
Query: 106 KTRHDVDSTTALHVPH---APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSII 162
+TR V++ L V PL+ERMRP ++++VGQ LL+PNS LR AV S R+ S+I
Sbjct: 3 RTRLPVETADLLSVDGDHLRPLAERMRPRTLDEMVGQKRLLAPNSALRRAVESGRVHSMI 62
Query: 163 FWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222
WGPPG GKTTLA + + +K +SAV SG+ +VR + +A + R S +RTVLF
Sbjct: 63 LWGPPGCGKTTLALLLAHYADAEFK--AISAVLSGLPEVRQVLAEAAQ-RFASGRRTVLF 119
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
VDEVHRFNK+QQD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+
Sbjct: 120 VDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEAVSPQDIV 179
Query: 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVP 342
L+RA+ D GL + + V+ ++ + S DGD R AL LEI+A A
Sbjct: 180 EALQRALQDSERGLGQET----IRVSDASLLEIASAADGDVRRALTLLEIAAELAT---- 231
Query: 343 VKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGN 402
E +P L L D F D+ GE+ Y+ ISALHKS+R +
Sbjct: 232 ----------GEGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSS 274
Query: 403 DADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462
+ DAA+YWL RML+GG P Y+ARRL R A EDVGLADP A + A+ + LG PE
Sbjct: 275 NPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDVGLADPRAQSMALEAWDIFERLGSPEG 334
Query: 463 NVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGK 522
+ AQ V YLA KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+
Sbjct: 335 ELAFAQLVLYLASTAKSNAGYAAFNQARAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQ 392
Query: 523 GYIYTPD 529
Y Y D
Sbjct: 393 DYQYDHD 399
>gi|419718778|ref|ZP_14246084.1| ATPase, AAA family [Lachnoanaerobaculum saburreum F0468]
gi|383305118|gb|EIC96497.1| ATPase, AAA family [Lachnoanaerobaculum saburreum F0468]
Length = 440
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 189/452 (41%), Positives = 278/452 (61%), Gaps = 36/452 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
LF +K ++ DS APL+ R+RP +++ VVGQ+H+L + L A+ +++L S
Sbjct: 3 LFDYMKEVNEKDS--------APLASRLRPDSLDMVVGQEHILGKDKFLYRAIKADKLSS 54
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
IIF+GPPG GKTT+AK I N+ ++K ++A T+G K++ +A+ +A+ K+T+
Sbjct: 55 IIFFGPPGCGKTTIAKVIANTTKSNFK--QINATTAGKKEMEEAISEAKISISMYKKKTI 112
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LF+DE+HRFNKSQQD LP +EDG+I+ IGATTENP F + L+SR RVL L PL +D
Sbjct: 113 LFIDEIHRFNKSQQDYLLPFVEDGTIILIGATTENPFFEVNKALISRSRVLELKPLSYND 172
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+E +L +A+ D G+ G ++++ +AIEF+ N DGDAR ALNALE++ +T +
Sbjct: 173 IESILNKAIKDKERGM----GKYELDISEEAIEFISKNADGDARNALNALELAILTTDI- 227
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR 400
+DG + ++ E Q K L YD+ G HY+ +SA KSMR
Sbjct: 228 -------------SADGKIH----IDINIISECIQKKVLKYDKDGNGHYDTVSAFIKSMR 270
Query: 401 GNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMP 460
G+D DA +Y+LA+ML GE +IARR+V A+EDVGLAD AL A + + A +GMP
Sbjct: 271 GSDPDATMYYLAKMLYAGEDIKFIARRIVICAAEDVGLADANALCVATNAFLAVERVGMP 330
Query: 461 ECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGY 520
E +ILA+ Y+A APKS + Y A+ +A K ++E+V VP H+RNA + ++IG
Sbjct: 331 EARIILAEAANYIAGAPKSNASYLAINSALKFVKENVDYE--VPKHIRNANYEGERDIGI 388
Query: 521 GKGYIYTPD--DPSAKQSFLPPSLEGYKFLDW 550
G GY Y D + KQ +LP ++ FL+
Sbjct: 389 GVGYKYAHDYQNHYVKQQYLPDEIKDTVFLNL 420
>gi|330810442|ref|YP_004354904.1| Replication-associated recombination protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327378550|gb|AEA69900.1| Replication-associated recombination protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 442
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 266/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 13 PLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 131 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVHRALTE-----ERGLGK 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + + L S DGD R LN LE ++ ++D G
Sbjct: 186 RHLSLSDEGFQILFSAADGDGRRLLNLLE-------------NASDLAEDDSEIGVELLQ 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG PL
Sbjct: 233 SL--LGDTRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPL 283
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 284 YLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAV 343
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + + P
Sbjct: 344 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP 401
Query: 540 PSLEGYKF 547
LE +F
Sbjct: 402 DELEPQRF 409
>gi|189346365|ref|YP_001942894.1| recombination factor protein RarA [Chlorobium limicola DSM 245]
gi|189340512|gb|ACD89915.1| AAA ATPase central domain protein [Chlorobium limicola DSM 245]
Length = 449
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 198/422 (46%), Positives = 269/422 (63%), Gaps = 35/422 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++D+ GQ HL+ + LRS + S RLPS+I WGPPG+GKTTLA+ +
Sbjct: 26 YKPLAERVRPRTLDDLSGQAHLVGKDGPLRSFLESGRLPSMILWGPPGSGKTTLAE--IC 83
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ ++ Y+F LSA+ +GVK+VR A++ AR+ R +S +RT+LF+DE+HRFNK+QQD+ L
Sbjct: 84 ATSLHYRFEQLSAIDAGVKEVRKALDGARQAR-RSGQRTILFIDEIHRFNKAQQDTLLHA 142
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD-DVNNGLSKS 299
IE G I IGATTENPSF + LLSR +V L PL D+E +++RAV DV
Sbjct: 143 IEQGLITLIGATTENPSFEVNGALLSRMQVYILQPLSEQDIEAVIRRAVACDV------I 196
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ R+ + A F+ GDAR ALNA+E +A + E EV
Sbjct: 197 MKEKRLVLEDPA--FVLQFAGGDARKALNAVEAAAALVPL-----ESSEV---------- 239
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++T + + A Q K YD+ E HY+ ISA KSMRG+D DAA++WLARM+EGGE
Sbjct: 240 ----VLTRELLERALQHKAPHYDKGAEAHYDTISAFIKSMRGSDPDAALFWLARMIEGGE 295
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL+IARR+V FASED+G ADP AL+ AVS +QA +G+PE + LAQ V YLA +PKS
Sbjct: 296 DPLFIARRMVIFASEDIGNADPFALSLAVSVFQAVQMIGLPEARINLAQGVTYLAGSPKS 355
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y + A + + Q+ GVPLHLRNAPT LMK +GYG+GY Y P +Q +
Sbjct: 356 NASYEGINEAMRAAK--AFQDAGVPLHLRNAPTTLMKTVGYGEGYRYPHQYPGHFVEQHY 413
Query: 538 LP 539
P
Sbjct: 414 FP 415
>gi|402699937|ref|ZP_10847916.1| recombination factor protein RarA [Pseudomonas fragi A22]
Length = 441
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 191/424 (45%), Positives = 265/424 (62%), Gaps = 34/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIARQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMLKLVQRALTE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + + L DGD R LN LE ++ A ED S+
Sbjct: 185 RGLTLSDEGFQTLLRAADGDGRRLLNLLENASDLA--------------EDNSE------ 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D +D+ GE Y+ ISALHKS+RG++ DA++YW ARM++GG PL
Sbjct: 225 --IGIDLLHSLLGDTQRRFDKGGEAFYDQISALHKSVRGSNPDASLYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMAFKAARRAVAED-GSRE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLE 543
LE
Sbjct: 401 DELE 404
>gi|325270474|ref|ZP_08137076.1| AAA family ATPase [Prevotella multiformis DSM 16608]
gi|324987197|gb|EGC19178.1| AAA family ATPase [Prevotella multiformis DSM 16608]
Length = 406
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 193/424 (45%), Positives = 261/424 (61%), Gaps = 38/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D +GQ HL+ ++LR + S R+ S I WGPPG GKTTLA+ I + +
Sbjct: 3 PLAERMRPRTLDDYIGQQHLVGEGAVLRRMIDSGRIASFILWGPPGVGKTTLAQIIAHRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+K R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIERAQKGRFFNSASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L PL+ D+ LL RAV + + L K
Sbjct: 121 KGTVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKDDLLTLLHRAVAE-DTELKKR--- 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + L GDAR LN LE+ A DG
Sbjct: 177 ---HIDLHETDALLRYSGGDARKLLNILELIVDAA-----------------PDGT---- 212
Query: 363 ALVTLDD--AKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT+ D +E Q LAYD+ GE HY++ISA KS+RG+D +AA+YW+ARM+EGGE
Sbjct: 213 --VTVTDRIVEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPEAALYWMARMIEGGED 270
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARR+V A+ED+GLA+P AL A + + A +G PE + LA+ V YLA + K
Sbjct: 271 PKFIARRVVISAAEDIGLANPNALLLANAAFDAVTKIGWPEGRIPLAEAVVYLARSKKDN 330
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y+A+ A +++R + N VPLHLRNAPTKLMK++GY GY Y D P +Q ++
Sbjct: 331 SAYKAINEALELVRRT--GNLPVPLHLRNAPTKLMKDLGYSDGYKYPHDYPGHYVEQQYM 388
Query: 539 PPSL 542
P +L
Sbjct: 389 PDAL 392
>gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK]
gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK]
Length = 446
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 262/427 (61%), Gaps = 34/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+++VVGQDHLL PNS LR + + S+I +GPPGTGKTTLA I S
Sbjct: 25 PLAVRMRPANLDEVVGQDHLLKPNSPLRRLIEGSGAASVILYGPPGTGKTTLASMI--SQ 82
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F LSA+ +GVK+VR ++ AR+ V+ ++TVLF+DEVHRF+K+QQD+ L +E
Sbjct: 83 ATGRRFEALSALAAGVKEVRAVIDVARQAAVR-GEQTVLFIDEVHRFSKTQQDALLAAVE 141
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+ ++ + ATTENPSF ++ PLLSR +L L PL P DV +++RA+ D GL G
Sbjct: 142 NRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLTPADVTTVIRRAITD-ERGL-----G 195
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
RV V+ DAIE L GDAR AL ALE++ T V E E
Sbjct: 196 GRVTVSDDAIEQLVLLSAGDARRALTALEVATET------VSESGET------------- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT++ +++ L YDR G++HY+++SA KS+RG+D DAA+++LARML GE P
Sbjct: 237 --VTVEVIEQSLDKAALRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARRL+ ASED+G+ADP AL AV+ Q +GMPE + LAQ +LA APKS ++
Sbjct: 295 FVARRLMILASEDIGMADPTALQIAVAAAQTVQLIGMPEAQLTLAQATVHLATAPKSNAV 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
ALGAA IR G+ VP HLR+ +++G GY Y D P A Q + P
Sbjct: 355 TTALGAAMADIR--AGKAGQVPAHLRDGHYSGAQKLGNAVGYKYAHDHPGGVASQQYPPD 412
Query: 541 SLEGYKF 547
L G +
Sbjct: 413 ELVGTDY 419
>gi|381186313|ref|ZP_09893885.1| ATPase, AAA family [Flavobacterium frigoris PS1]
gi|379651748|gb|EIA10311.1| ATPase, AAA family [Flavobacterium frigoris PS1]
Length = 425
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 263/440 (59%), Gaps = 36/440 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ER+RP + D + Q HL+ PN L + +PS+I WGPPGTGKTTLA+ I
Sbjct: 2 EAPLAERIRPQKLEDYISQAHLIGPNGSLTQQIAKGIIPSLILWGPPGTGKTTLAQIIAQ 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F LSA+ SGVKD+RD +E A++ + + K +LF+DE+HRF+KSQQDS L
Sbjct: 62 ES--KRPFYILSAINSGVKDIRDVIEKAKQSGGLFTAKNPILFIDEIHRFSKSQQDSLLA 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I IGATTENPSF +I LLSRC+V LN D+E LL+RA+ + LS
Sbjct: 120 AVEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFTKSDLESLLQRALK-TDTFLSTK 178
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ E L GD R LN E+ AA EDE
Sbjct: 179 ------NIELKETEALLRLSGGDGRKLLNIFELVINAAA-------------EDE----- 214
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++T D + Q + YD++GE+HY+++SA KS+RG+D + A+YWLARM+EGGE
Sbjct: 215 ---IVITNDRVFQLVQQNTVLYDKSGEQHYDIVSAFIKSIRGSDPNGAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARR++ +SED+G A+P A A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 272 DVKFIARRMLILSSEDIGNANPTAFIMANNTFQAVTTIGYPESRIILSQCAIYLATSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
+ Y A+G AQ++++++ + VP+HLRNAPTKLMKE+GYG Y Y+ D + A+Q F
Sbjct: 332 NASYMAIGTAQQLVKQT--GDLSVPIHLRNAPTKLMKELGYGDEYKYSHDYANNFAEQEF 389
Query: 538 LPPSLEGYKFLDWPKSNTTD 557
LP L K + P SN+ +
Sbjct: 390 LPKELSN-KAIYVPGSNSRE 408
>gi|257464779|ref|ZP_05629150.1| recombination factor protein RarA [Actinobacillus minor 202]
gi|257450439|gb|EEV24482.1| recombination factor protein RarA [Actinobacillus minor 202]
Length = 426
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 188/427 (44%), Positives = 267/427 (62%), Gaps = 39/427 (9%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP N+++ +GQ HL+ LR A+ S S+IFWGPPGTGKTTLA+ I +Y
Sbjct: 1 MRPRNLSEYIGQHHLIGEGKPLRRAIESKHPHSMIFWGPPGTGKTTLAEII------AYH 54
Query: 188 FVC----LSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED 243
F LSAVTSG+K++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IED
Sbjct: 55 FDADVERLSAVTSGIKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPYIED 113
Query: 244 GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGT 303
G+I+FIGATTENPSF L LLSR RV L PL+ D+ ++L+ A++D GL G
Sbjct: 114 GTIIFIGATTENPSFELNNALLSRARVYILKPLQSADILLVLQNALNDKTRGL----GAE 169
Query: 304 RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363
++ + + + L +GDAR ALN LE ++ ++ + E+
Sbjct: 170 KIVLKDNVLNLLADYVNGDARYALNCLE-------------QMSDMATQTEAG------K 210
Query: 364 LVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLY 423
L L+ E + +D++G+ +Y+LISALHKS+RG+ D A+YW AR+L G PLY
Sbjct: 211 LFDLNLLTEILGERLARFDKSGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLY 270
Query: 424 IARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIY 483
+ARRL+ ASED+G ADP A+ A+S + +G E +AQ V YLA+APKS ++Y
Sbjct: 271 VARRLLAIASEDIGNADPRAMQVALSAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAVY 330
Query: 484 RALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPP 540
A A+++ +E+ ++ VP HLRNAPT LMK +GYG+ Y Y + +A +++ PP
Sbjct: 331 TAFNEAKRLAKEA--KDYDVPEHLRNAPTHLMKTLGYGEEYRYAHHEEHAYAAGENYFPP 388
Query: 541 SLEGYKF 547
L+ +F
Sbjct: 389 ELKNTQF 395
>gi|423698083|ref|ZP_17672573.1| recombination factor protein RarA [Pseudomonas fluorescens Q8r1-96]
gi|388005629|gb|EIK66896.1| recombination factor protein RarA [Pseudomonas fluorescens Q8r1-96]
Length = 441
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 266/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + + L S DGD R LN LE ++ ++D G
Sbjct: 185 RHLSLSDEGFQILFSAADGDGRRLLNLLE-------------NASDLAEDDSEIGVELLQ 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG PL
Sbjct: 232 SL--LGDTRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + + P
Sbjct: 343 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE +F
Sbjct: 401 DELEPQRF 408
>gi|118591151|ref|ZP_01548550.1| AAA ATPase, central region [Stappia aggregata IAM 12614]
gi|118436227|gb|EAV42869.1| AAA ATPase, central region [Stappia aggregata IAM 12614]
Length = 434
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 255/432 (59%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + DVVGQDHLL P L + + L S+IFWGPPGTGKTT+A+ + N
Sbjct: 17 PLADRMRPTRLADVVGQDHLLGPEGTLSRMLKTRTLGSLIFWGPPGTGKTTIARLLANET 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ F +SA+ SGV D++ E AR R+ S + T+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 77 DLA--FEQISAIFSGVADLKKVFEAARARRM-SGRATLLFVDEIHRFNRAQQDSFLPVME 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I +GATTENPSF L LLSR V+T + L +E LL RA + +
Sbjct: 134 DGTITLVGATTENPSFELNAALLSRSHVMTFHSLSAEAIEKLLARA---------EELEE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ DA L DGD R +L E +V +DE
Sbjct: 185 RKLPLDEDARRVLIRMADGDGRSSLTLAE-------------DVWRAAGQDE-------- 223
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ + +E Q + YD++ + HYNLISALHKS+RG+D DAA+YW RML+GGE PL
Sbjct: 224 -VFDAERLQEIVQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYWFCRMLDGGEDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+R A ED+GLADP AL QA + A LG PE + LAQ V YLA APKS
Sbjct: 283 YLARRLIRMAVEDIGLADPNALVQANAARDAYQMLGSPEGELALAQSVIYLATAPKSNGA 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A AA + + S + P H+ NAPTKLMK+ GYG GY Y D P + Q + P
Sbjct: 343 YVAYKAAMRDAKSS--GSLLPPKHILNAPTKLMKQEGYGDGYQYDHDAPDGFSGQDYFPE 400
Query: 541 SLEGYKFLDWPK 552
+ + D P+
Sbjct: 401 QMGRKTYYDPPQ 412
>gi|326473927|gb|EGD97936.1| AAA family ATPase [Trichophyton tonsurans CBS 112818]
Length = 551
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/458 (42%), Positives = 273/458 (59%), Gaps = 37/458 (8%)
Query: 96 IEPSPLFKRLK--TRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAV 153
+ P+PL+ + V S+ AL APL+ERMRP ++++ GQ+ L+ N +LR +
Sbjct: 113 VSPAPLYDSGNDHSAKRVKSSNALQ-KSAPLAERMRPRTLDEMCGQE-LVGENGVLRGLI 170
Query: 154 CSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
+R+PS+I WG GTGKTTLA+ I + V +FV +++ +SGV + + +A+
Sbjct: 171 ERDRVPSMILWGSAGTGKTTLARVIAS--MVGSRFVEINSTSSGVAECKKLFAEAKNELS 228
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTL 273
+ ++T++F DE+HRF+KSQQD FL +E G + IGATTENPSF + LLSRCR TL
Sbjct: 229 LTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL 288
Query: 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333
L ++ +L RA+ S S V+ + I++L + DGDAR ALN LE++
Sbjct: 289 AKLTEENICAILNRALRVEGPNYSPSA-----LVDDELIKYLAAFADGDARTALNLLELA 343
Query: 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLIS 393
++ Q + +T D+ K++ + L YDRAG++HY+ IS
Sbjct: 344 M-------------DLSQREN----------MTKDELKKSL-TRTLVYDRAGDQHYDTIS 379
Query: 394 ALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQA 453
A HKS+RG+D DA++Y+LARM++ GE PLYIARRL+ ASEDVGLAD L+ A + Y A
Sbjct: 380 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLADNTMLSLATAAYTA 439
Query: 454 CHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTK 513
+G+PE + LA LALAPKS YR L A + E +P+HLRNAPT+
Sbjct: 440 VEKIGLPEARINLAHATVALALAPKSTRAYRGLANAMASLEEPGIAGLPIPIHLRNAPTR 499
Query: 514 LMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
LMKEIGYGK Y Y PD D A Q +LP L G FL+
Sbjct: 500 LMKEIGYGKEYKYNPDYKDGKAVQDYLPDKLIGRSFLE 537
>gi|91782394|ref|YP_557600.1| recombination factor protein RarA [Burkholderia xenovorans LB400]
gi|385203480|ref|ZP_10030350.1| AAA ATPase [Burkholderia sp. Ch1-1]
gi|91686348|gb|ABE29548.1| Recombination protein MgsA [Burkholderia xenovorans LB400]
gi|385183371|gb|EIF32645.1| AAA ATPase [Burkholderia sp. Ch1-1]
Length = 437
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 258/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAEFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L + LL+RA K +GG
Sbjct: 127 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLTDEEQRELLERA--------QKELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A A+ ++ E DG
Sbjct: 179 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAASQ----------QKTTEIDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG+ D A+YW RML+GG P
Sbjct: 227 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + S Q+ GVP+HLRNAPT+LMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFV--SKDQSRGVPVHLRNAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
++
Sbjct: 395 ENM 397
>gi|422644630|ref|ZP_16707767.1| recombination factor protein RarA [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330958181|gb|EGH58441.1| recombination factor protein RarA [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 440
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----DKGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG +
Sbjct: 185 HKLRLSEEGFAMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|154253206|ref|YP_001414030.1| recombination factor protein RarA [Parvibaculum lavamentivorans
DS-1]
gi|154157156|gb|ABS64373.1| AAA ATPase central domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 434
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 201/427 (47%), Positives = 263/427 (61%), Gaps = 39/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + +VVGQ+HL+ P L + L S+IFWGPPGTGKTT+A+ + + V
Sbjct: 17 PLADRLRPKVLEEVVGQEHLIGPKGPLGRMLAQGHLSSVIFWGPPGTGKTTIARLLADRV 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F +SA+ SGV D++ E AR R + K T+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 77 GL--HFEPMSAIFSGVADLKKIFEAARGRR-STGKGTLLFVDEIHRFNRAQQDSFLPVME 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++ +GATTENPSF L LLSR +VL LN L +E LL RA ++ G
Sbjct: 134 DGTVTLVGATTENPSFELNAALLSRAQVLVLNRLDDAALEELLSRA---------EAFYG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + DA L + DGD R ALN E V ++ VE D +
Sbjct: 185 ESLPLTEDARASLRAMADGDGRYALNLAE----------EVHALRAVEPMDTA------- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+T A Q + YD+ E HYNL+SALHKS+RG+D DAA+YWLARML GGE+PL
Sbjct: 228 ALIT------AVQRRAPLYDKGREGHYNLVSALHKSIRGSDCDAALYWLARMLVGGEEPL 281
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVR A ED+GLADP A++QA++ FLG PE + LAQ YLA APKS +
Sbjct: 282 YIARRLVRAAIEDIGLADPEAVHQALAAKDVFDFLGAPEGELALAQATIYLATAPKSNAA 341
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y A GAA++ R++ + P H+ NAPTKLMKE+GYG GY Y D P A Q + P
Sbjct: 342 YAAFGAAKRSARDT--GSVAPPAHILNAPTKLMKELGYGAGYEYDHDAPQAFSGQDYFPE 399
Query: 541 SLEGYKF 547
+ +F
Sbjct: 400 EVGRQEF 406
>gi|422669032|ref|ZP_16728883.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330981392|gb|EGH79495.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 440
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 196/426 (46%), Positives = 264/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLAK ++ V
Sbjct: 12 PLAARLRANNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAK-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE AR+ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVARQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ L S DGD R LN LE ++ A DG V
Sbjct: 185 RQLALSDGGFAMLMSAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 GLLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|342904399|ref|ZP_08726200.1| Replication-associated recombination protein A [Haemophilus
haemolyticus M21621]
gi|341953639|gb|EGT80143.1| Replication-associated recombination protein A [Haemophilus
haemolyticus M21621]
Length = 447
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/429 (43%), Positives = 268/429 (62%), Gaps = 32/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQTHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ S+++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-SDRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRTRVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKG-YIYTPDDP---SAKQSFL 538
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGGAEYRYAHDEPNAYAAGENYF 406
Query: 539 PPSLEGYKF 547
PP L+ ++
Sbjct: 407 PPELKDTQY 415
>gi|238789330|ref|ZP_04633117.1| Replication-associated recombination protein A [Yersinia
frederiksenii ATCC 33641]
gi|238722662|gb|EEQ14315.1| Replication-associated recombination protein A [Yersinia
frederiksenii ATCC 33641]
Length = 444
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+ D + G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEKVIDQAMSDSSRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + +++G V
Sbjct: 185 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + RE + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YTAFKAAMQDAREK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMAATRY 412
>gi|423128339|ref|ZP_17116018.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5250]
gi|376393695|gb|EHT06351.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5250]
Length = 447
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A+ D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTSDDIEQVLNQAMSDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A V +VE E G
Sbjct: 188 QNIVLPDETRKAIADLVNGDARRALNTLEMMADMAEAEASGNRVLKVELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|68249823|ref|YP_248935.1| recombination factor protein RarA [Haemophilus influenzae 86-028NP]
gi|68058022|gb|AAX88275.1| predicted ATPase related to the helicase subunit of the holliday
junction resolvase [Haemophilus influenzae 86-028NP]
Length = 446
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V E+E + D
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------VDMADEMENGKKIDR----- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 234 ---TL--LKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|238792411|ref|ZP_04636045.1| Replication-associated recombination protein A [Yersinia intermedia
ATCC 29909]
gi|238728337|gb|EEQ19857.1| Replication-associated recombination protein A [Yersinia intermedia
ATCC 29909]
Length = 444
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ ++ +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+ D G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSDSGRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ D + GDAR ALN+LE+ A A + +++G V
Sbjct: 185 QNIKLPDDTRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YSAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMAATRY 412
>gi|145627717|ref|ZP_01783518.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
gi|145639902|ref|ZP_01795502.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
gi|144979492|gb|EDJ89151.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
gi|145270993|gb|EDK10910.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
gi|309751081|gb|ADO81065.1| Recombination factor RarA [Haemophilus influenzae R2866]
Length = 446
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|398901334|ref|ZP_10650258.1| AAA ATPase [Pseudomonas sp. GM50]
gi|398180070|gb|EJM67662.1| AAA ATPase [Pseudomonas sp. GM50]
Length = 440
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 268/429 (62%), Gaps = 36/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD-GCSPY 361
++ ++ + + L S DGD R LN LE ++ A ED S+ G
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSEIGVDLL 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+L L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG P
Sbjct: 231 QSL--LGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDP 281
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS +
Sbjct: 282 LYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNA 341
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 342 VYMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF 399
Query: 539 PPSLEGYKF 547
P LE +F
Sbjct: 400 PDELEPQRF 408
>gi|378950097|ref|YP_005207585.1| recombination factor protein [Pseudomonas fluorescens F113]
gi|359760111|gb|AEV62190.1| recombination factor protein [Pseudomonas fluorescens F113]
Length = 441
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 265/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + L S DGD R LN LE ++ ++D G
Sbjct: 185 RHLSLGDEGFQILFSAADGDGRRLLNLLE-------------NASDLAEDDSEIGVELLQ 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG PL
Sbjct: 232 SL--LGDTRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + + P
Sbjct: 343 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE +F
Sbjct: 401 DELEPQRF 408
>gi|161898988|ref|YP_201181.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|162319801|ref|YP_451430.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188576725|ref|YP_001913654.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576916|ref|YP_001913845.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521177|gb|ACD59122.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521368|gb|ACD59313.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 458
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/430 (46%), Positives = 256/430 (59%), Gaps = 35/430 (8%)
Query: 105 LKTRHDVDSTT--ALHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP 159
+ R DS T LHV + PL+ERMRP ++D+VGQ LL+P+S LR AV S R+
Sbjct: 1 MSKRKRPDSVTPDLLHVDRSAMGPLAERMRPRTLDDMVGQKRLLAPDSALRRAVESGRVH 60
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRT 219
S+I WGPPG GKTTLA + + +F +SAV SG+ +VR + +A + R +RT
Sbjct: 61 SMILWGPPGCGKTTLALLLAHYA--DAEFNAISAVLSGLPEVRQVLAEAAQ-RFAGGRRT 117
Query: 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPH 279
VLFVDEVHRFNK+QQD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P
Sbjct: 118 VLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQ 177
Query: 280 DVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
D+ L+RA+ D GL + ++V+ ++ + S DGD R AL LEI+A A
Sbjct: 178 DIVEALQRALHDAERGLGQQT----IQVSEASLLEIASAADGDVRRALTLLEIAAELAT- 232
Query: 340 RVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSM 399
E +P L L D F D+ GE+ Y+ ISALHKS+
Sbjct: 233 -------------GEGGEITPRTLLQVLADRTRRF-------DKNGEQFYDQISALHKSV 272
Query: 400 RGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGM 459
R ++ DAA+YWL RML+GG P Y+ARRL R A ED+GLADP A A+ + LG
Sbjct: 273 RSSNPDAALYWLTRMLDGGCDPTYLARRLTRMAIEDIGLADPRAQGMALEAWDIYERLGS 332
Query: 460 PECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519
PE + AQ V YLA KS + Y A A+ +R + Q VPLHLRNAPTKLMK +G
Sbjct: 333 PEGELAFAQLVLYLASTAKSNAGYAAFNQARAEVRATGTQE--VPLHLRNAPTKLMKTLG 390
Query: 520 YGKGYIYTPD 529
YG+ Y Y D
Sbjct: 391 YGQDYQYDHD 400
>gi|238795840|ref|ZP_04639353.1| Replication-associated recombination protein A [Yersinia mollaretii
ATCC 43969]
gi|238720303|gb|EEQ12106.1| Replication-associated recombination protein A [Yersinia mollaretii
ATCC 43969]
Length = 444
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ ++ +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+ D G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTAADIEKVIDQAMSDSQRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + +++G V
Sbjct: 185 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RLLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YTAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMAATRY 412
>gi|383814724|ref|ZP_09970143.1| recombination factor protein RarA [Serratia sp. M24T3]
gi|383296501|gb|EIC84816.1| recombination factor protein RarA [Serratia sp. M24T3]
Length = 447
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 188/433 (43%), Positives = 267/433 (61%), Gaps = 30/433 (6%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
H PL+ RMRPV + + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+
Sbjct: 10 HNEFQPLAARMRPVTLAEYIGQQHLLAPGKPLPRAIEAGQLHSMILWGPPGTGKTTLAEL 69
Query: 178 IVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
I + + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+F
Sbjct: 70 IGRYADADVERI--SAVTSGIKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAF 126
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
LP IEDG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+++ + G +
Sbjct: 127 LPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKGLTADDIEKVIDQAMNNADRGYA 186
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
G + ++ L +GDAR ALN++E+ A ++ + DE
Sbjct: 187 ----GQNIRISPQTRRMLAELVNGDARRALNSIEMMA-------------DMAETDEQG- 228
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
V ++T + E + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++
Sbjct: 229 ----VRVLTTELLNEISGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITA 284
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
G PLY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA AP
Sbjct: 285 GGDPLYVARRLLAIASEDVGNADPRAMQIAIAAWDCFTRVGPAEGERAIAQAIVYLACAP 344
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAK 534
KS ++Y A AA + +E + VP HLRNAPTKLMKE+G G Y Y D+P +A
Sbjct: 345 KSNAVYTAFKAAMRDAKEQADYD--VPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAG 402
Query: 535 QSFLPPSLEGYKF 547
+++ PP + ++
Sbjct: 403 ENYFPPEMAKTQY 415
>gi|421727818|ref|ZP_16166976.1| recombination factor protein RarA [Klebsiella oxytoca M5al]
gi|410371301|gb|EKP26024.1| recombination factor protein RarA [Klebsiella oxytoca M5al]
Length = 447
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/428 (45%), Positives = 258/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A+ D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTSDDIEQVLSQAMSDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QNIVLPDETRKAIADLVNGDARRALNTLEMMADMA----------------ESDASGNRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKVEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|71733913|ref|YP_275261.1| recombination factor protein RarA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554466|gb|AAZ33677.1| ATPase, AAA family [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 440
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/432 (44%), Positives = 271/432 (62%), Gaps = 42/432 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLTLSDEGFTILMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG+D DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSDPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
++Y A AA +RE+ G+++ VPLHLRNAPTKLMK++GYG+ Y Y D+P +A +
Sbjct: 341 AVYMAFKAA---MREA-GEHDSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGE 396
Query: 536 SFLPPSLEGYKF 547
+ P LE ++
Sbjct: 397 DYFPDELEPRQY 408
>gi|225027995|ref|ZP_03717187.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
gi|224954709|gb|EEG35918.1| recombination factor protein RarA [Eubacterium hallii DSM 3353]
Length = 445
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 269/440 (61%), Gaps = 31/440 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP N+++V GQ H++ + LL A+ ++++ S+IF+GPPGTGKTTLAK I N+
Sbjct: 20 SPLAVRMRPKNLDEVAGQQHIIGKDKLLYRAIKADKISSLIFYGPPGTGKTTLAKVIANT 79
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ + FV ++A TSG KD+ AV A+ KRT+LF+DE+HRFNK+QQD LP +
Sbjct: 80 TSAN--FVQMNATTSGKKDMEQAVSQAKDAFGMYGKRTILFIDEIHRFNKAQQDYLLPFV 137
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + + LLSR ++ L PL D+ L+K AV+D G+ G
Sbjct: 138 EDGTVILIGATTENPYFEVNSALLSRSQIFHLEPLAESDIYRLVKTAVEDNERGM----G 193
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +A F+ GDAR ALNA+E+ +T E +D+
Sbjct: 194 AYGAVITEEAARFIAEMAGGDARRALNAVELGVLT------------TEPDDKGQ----- 236
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++ L A+E Q K + YDR G+ HY+ ISA KSMRG D DAA+++LARML+ GE P
Sbjct: 237 -LVIDLSVAEECIQRKSVNYDRDGDNHYDNISAFIKSMRGTDPDAAVFYLARMLDAGEDP 295
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP AL AV+ Q +GMPE ++L+Q AY+A APKS +
Sbjct: 296 KFIARRIMICASEDVGNADPQALVVAVAASQGVERIGMPEARILLSQAAAYVASAPKSNA 355
Query: 482 IYRALGAAQKVIRESVGQNEG-VPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
A+ A +++R QN G VP +LR+A K++G+G GY Y D P KQ +L
Sbjct: 356 CIMAVDKALEMVR---SQNTGQVPPYLRDAHYGGAKKLGHGIGYKYAHDYPEHYVKQQYL 412
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L+ +F P N +K
Sbjct: 413 PDELKEERFY-VPTENGYEK 431
>gi|395652669|ref|ZP_10440519.1| recombination factor protein RarA [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 440
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 265/430 (61%), Gaps = 38/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLHRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + + L S DGD R LN LE ++ A DG V
Sbjct: 185 RHLSLSDEGFKILFSAADGDGRRFLNLLENASDLA-----------------EDGSEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKF 547
P LE +F
Sbjct: 399 FPDELEPQRF 408
>gi|332531345|ref|ZP_08407253.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
gi|332039209|gb|EGI75627.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
Length = 436
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/429 (44%), Positives = 260/429 (60%), Gaps = 42/429 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
PH PL+ER+RP + +V+GQ HLL LR A S + S I WGPPGTGKTT+A+ +
Sbjct: 9 PHQPLAERLRPHTLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGTGKTTIARLMA 68
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFL 238
+ A +F+ +SAV GVKD+R+AVE A R +RT++FVDEVHRFNKSQQD+FL
Sbjct: 69 D--AFGAQFISISAVLGGVKDIREAVELAEAARDGLQQQRTIVFVDEVHRFNKSQQDAFL 126
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE--ILLKRAVDDVNNGL 296
P +E G FIGATTENPSF + + LLSR V L L D++ +L R +D V
Sbjct: 127 PHVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQALTEDDLKQIVLRARGIDAVPP-- 184
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
+ A++ L + DGDAR LN LE ++ A ++ K+ + DE
Sbjct: 185 ----------LEDAALDRLIAYADGDARRLLNTLETLSVAA------RQQKQEQIRDE-- 226
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
++ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YW RML+
Sbjct: 227 ----WLLKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWFVRMLD 274
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GG P Y+ARR VR A+ED+GLADP AL A+ + LG PE + LA+ V YLA+A
Sbjct: 275 GGADPRYMARRFVRMAAEDIGLADPRALRLALDAAEVYERLGSPEGELALAETVIYLAMA 334
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SA 533
PKS ++Y+A AAQ +++ VP+HLRNAPTKLMKE+ YGKGY Y D+ +A
Sbjct: 335 PKSNAVYKAYKAAQAFVKKD--GTRPVPMHLRNAPTKLMKELDYGKGYRYAHDEEDAFAA 392
Query: 534 KQSFLPPSL 542
+ +LP +
Sbjct: 393 GEQYLPEGM 401
>gi|217973365|ref|YP_002358116.1| recombination factor protein RarA [Shewanella baltica OS223]
gi|217498500|gb|ACK46693.1| AAA ATPase central domain protein [Shewanella baltica OS223]
Length = 443
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 263/428 (61%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I + +GQ HLL LR A+ + R S++ WGPPGTGKTTLA+ I +
Sbjct: 14 PLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAHYS 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVKD+R A+E A+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAHVERI--SAVTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF + LLSR RV + L ++ ++ +A+ D GL G
Sbjct: 132 DGTVIFIGATTENPSFEINNALLSRARVYLIKRLSHDEIAHIVTQALSDTERGL----GQ 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + L CDGDAR ALN +E+ + A DG +
Sbjct: 188 RQFVMPTDVLTTLAQLCDGDARKALNLIELMSDMLA-----------------DGGT--- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
T D + + +D+ G++ Y+LISA+HKS+RG+ DAA+YW R+LEGG PL
Sbjct: 228 --FTTDMLIQVAGHQVAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + H +G E +AQ + YLA APKS ++
Sbjct: 286 YVARRLLAIASEDVGNADPAAMTIALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
Y A AA+++ R++ GQ E VP HLRNAPT+LMK+IG G GY Y D+ +A S + P
Sbjct: 346 YTAFKAARELARDT-GQVE-VPHHLRNAPTQLMKDIGMGAGYRYAHDEANAYASGENYFP 403
Query: 540 PSLEGYKF 547
SL+ +F
Sbjct: 404 ESLQTAQF 411
>gi|237721058|ref|ZP_04551539.1| recombination factor protein RarA [Bacteroides sp. 2_2_4]
gi|262407859|ref|ZP_06084407.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647656|ref|ZP_06725222.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a]
gi|294807679|ref|ZP_06766472.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC
1b]
gi|298481000|ref|ZP_06999195.1| ATPase, AAA family [Bacteroides sp. D22]
gi|336405421|ref|ZP_08586100.1| hypothetical protein HMPREF0127_03413 [Bacteroides sp. 1_1_30]
gi|345511664|ref|ZP_08791204.1| recombination factor protein RarA [Bacteroides sp. D1]
gi|229443901|gb|EEO49692.1| recombination factor protein RarA [Bacteroides sp. D1]
gi|229449893|gb|EEO55684.1| recombination factor protein RarA [Bacteroides sp. 2_2_4]
gi|262354667|gb|EEZ03759.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637005|gb|EFF55457.1| recombination factor protein RarA [Bacteroides ovatus SD CC 2a]
gi|294445115|gb|EFG13789.1| recombination factor protein RarA [Bacteroides xylanisolvens SD CC
1b]
gi|298273023|gb|EFI14589.1| ATPase, AAA family [Bacteroides sp. D22]
gi|335938002|gb|EGM99896.1| hypothetical protein HMPREF0127_03413 [Bacteroides sp. 1_1_30]
Length = 423
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 271/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAI--TTDAVLKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V+ E E
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELV---------------VQSETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C++ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLLANACFETLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WQPQNNPAEQ 407
>gi|427429391|ref|ZP_18919426.1| Holliday junction DNA helicase [Caenispirillum salinarum AK4]
gi|425880584|gb|EKV29280.1| Holliday junction DNA helicase [Caenispirillum salinarum AK4]
Length = 439
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/434 (44%), Positives = 266/434 (61%), Gaps = 39/434 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP +++VVGQDHL+ P+ L V + +L SI+ WGPPG GKTT+A+ + +
Sbjct: 14 PLADRLRPKTLDEVVGQDHLIGPDGPLGRMVRAGKLQSIVLWGPPGCGKTTIARLLADGT 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ F LSAV SGV D+R E ARK R ++ + T+LFVDE+HRFN+SQQD FLP +E
Sbjct: 74 DL--HFEPLSAVFSGVADLRKVFEAARK-RREAGQGTLLFVDEIHRFNRSQQDGFLPYVE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSRCRVL LN L +E LL RA ++ G
Sbjct: 131 DGTVVLVGATTENPSFELNAALLSRCRVLVLNRLDEPALEKLLARAEAEL---------G 181
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + +A + L + DGD R L E A A + P+ ++ G + V
Sbjct: 182 APLPLTEEARQALKALADGDGRFLLGMAEDIA-NAGISEPL----------DAAGLAGIV 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
Q + YD+ E HYNLISALHKS+RG+D DAA+YW+ RMLEGGE P+
Sbjct: 231 ------------QRRAPVYDKDREGHYNLISALHKSLRGSDTDAALYWMNRMLEGGEDPI 278
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YI RRL RFA ED+GLADP A+ QA++ ++ LG PE ++ +AQ V YL APKS +
Sbjct: 279 YILRRLTRFAVEDIGLADPGAVTQAIAAWETYDRLGSPEGDLAIAQLVIYLGTAPKSNAG 338
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y A AA++ +++ P H+ NAPT++MK++GYGKGY Y D P A QS+ P
Sbjct: 339 YSAFKAARRAAKQTGSLMP--PKHILNAPTRMMKDLGYGKGYRYDHDAPEAFSGQSYFPE 396
Query: 541 SLEGYKFLDWPKSN 554
+E +F D P+
Sbjct: 397 EMERQRFYDPPERG 410
>gi|344344038|ref|ZP_08774903.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
gi|343804322|gb|EGV22223.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
Length = 442
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 197/431 (45%), Positives = 263/431 (61%), Gaps = 33/431 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+ER+RP ++ D GQ HLL P+ LR A+ S R S+I WGPPGTGKTTLA+ I
Sbjct: 8 PQTPLAERLRPASLEDFRGQSHLLGPDKPLRRALESGRAHSMILWGPPGTGKTTLARLI- 66
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ + + LSAV +GVK++R+AV A+ ++LF+DEVHRFNK+QQD+FLP
Sbjct: 67 -AARAEAELITLSAVLAGVKEIREAVARAQARLAADGAASLLFIDEVHRFNKAQQDAFLP 125
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+EDG++ FIGATTENPSF L LLSR RV L L D+ +L+RA+ D GL+
Sbjct: 126 HVEDGTLTFIGATTENPSFALNNALLSRARVYVLQSLDADDLVAVLERALHDPRGGLAAR 185
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ + +A + DGDAR ALN LE++A DE
Sbjct: 186 G----LALAPEAARLIAEGADGDARSALNLLELAAAAV---------------DEG---- 222
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
A++ D +DR G++ Y+ ISALHKS+RG+ DAA+YWLARML+GG
Sbjct: 223 ---AVIGRDTVAAVASASLRRFDRGGDDFYDQISALHKSVRGSAPDAALYWLARMLDGGC 279
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ARRLVR ASED+G ADP AL+ A++ ++A LG PE + LAQ YLA A KS
Sbjct: 280 DPLYLARRLVRIASEDIGNADPRALDLALNAWEAQARLGSPEGELALAQATVYLACAAKS 339
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A AAQ R S + GVPLHLRNAPT+LMKE+G+G+ Y Y D+P +A +
Sbjct: 340 NAVYTAWKAAQADARAS--GSLGVPLHLRNAPTRLMKELGHGRRYRYAHDEPEGYAADER 397
Query: 537 FLPPSLEGYKF 547
+ P L ++
Sbjct: 398 YFPEELGERRY 408
>gi|289625405|ref|ZP_06458359.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289649312|ref|ZP_06480655.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
str. 2250]
gi|416017306|ref|ZP_11564425.1| recombination factor protein RarA [Pseudomonas syringae pv.
glycinea str. B076]
gi|416027789|ref|ZP_11570963.1| recombination factor protein RarA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422582012|ref|ZP_16657151.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422597633|ref|ZP_16671904.1| recombination factor protein RarA [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422606026|ref|ZP_16678037.1| recombination factor protein RarA [Pseudomonas syringae pv. mori
str. 301020]
gi|298157914|gb|EFH98992.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323768|gb|EFW79852.1| recombination factor protein RarA [Pseudomonas syringae pv.
glycinea str. B076]
gi|320327909|gb|EFW83914.1| recombination factor protein RarA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866858|gb|EGH01567.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330889679|gb|EGH22340.1| recombination factor protein RarA [Pseudomonas syringae pv. mori
str. 301020]
gi|330987921|gb|EGH86024.1| recombination factor protein RarA [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 440
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLTLSDEGFTILMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG+D DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSDPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|339488311|ref|YP_004702839.1| recombination factor protein RarA [Pseudomonas putida S16]
gi|431803327|ref|YP_007230230.1| recombination factor protein RarA [Pseudomonas putida HB3267]
gi|338839154|gb|AEJ13959.1| recombination factor protein RarA [Pseudomonas putida S16]
gi|430794092|gb|AGA74287.1| recombination factor protein RarA [Pseudomonas putida HB3267]
Length = 441
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 259/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V DA + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 EMLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYMGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPEELE 404
>gi|145637468|ref|ZP_01793126.1| predicted ATPase [Haemophilus influenzae PittHH]
gi|145269274|gb|EDK09219.1| predicted ATPase [Haemophilus influenzae PittHH]
Length = 446
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DGS++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGSVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|148826111|ref|YP_001290864.1| recombination factor protein RarA [Haemophilus influenzae PittEE]
gi|148716271|gb|ABQ98481.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
influenzae PittEE]
Length = 453
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V E+E + D
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------VDMADEMENGKKIDR----- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 234 ---TL--LKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|423268234|ref|ZP_17247206.1| hypothetical protein HMPREF1079_00288 [Bacteroides fragilis
CL05T00C42]
gi|423274311|ref|ZP_17253258.1| hypothetical protein HMPREF1080_01911 [Bacteroides fragilis
CL05T12C13]
gi|392705202|gb|EIY98334.1| hypothetical protein HMPREF1079_00288 [Bacteroides fragilis
CL05T00C42]
gi|392705734|gb|EIY98861.1| hypothetical protein HMPREF1080_01911 [Bacteroides fragilis
CL05T12C13]
Length = 423
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/443 (44%), Positives = 265/443 (59%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V + IE + GDAR LN LE+ VE E E
Sbjct: 169 TDVVLKERKIELKETGAILRFSGGDARKLLNILELV---------------VESETEE-- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVIITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRITLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ
Sbjct: 328 KSNSAYNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP ++ K L P+ N ++
Sbjct: 386 QFLPDEIKA-KQLWQPQHNPAEQ 407
>gi|241763747|ref|ZP_04761795.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
gi|241367052|gb|EER61437.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
Length = 437
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 258/428 (60%), Gaps = 38/428 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
PH PL+ER+RP +++V+GQ H+L P LR A S R S I WGPPG GKTT+A+ +
Sbjct: 7 PHQPLAERLRPRQLSEVIGQQHVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMA 66
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFL 238
+ A +F+ +SAV GVKD+RDAV+ A R +RT++FVDEVHRFNKSQQD+FL
Sbjct: 67 D--AFDAQFISISAVLGGVKDIRDAVQLAESARDGLMQQRTIVFVDEVHRFNKSQQDAFL 124
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P +E G FIGATTENPSF + + LLSR V L PL D++ ++ A+ L
Sbjct: 125 PHVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLSTDDLKQIV--ALAQSQQALPA 182
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+ ++AIE L + DGDAR LN LE + AA QE ++
Sbjct: 183 --------IENEAIERLVAYADGDARRLLNTLETLEMAAA------------QEQLAEIT 222
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
++ V + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+GG
Sbjct: 223 DAWLLKVLGERMRR--------YDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGG 274
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARR+VR A ED+GLADP A+ A Q LG PE + LAQ V YLA+APK
Sbjct: 275 ADPRYMARRIVRMAWEDIGLADPRAMQLANEAAQTYERLGSPEGELALAQAVIYLAMAPK 334
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S + Y A A+ +++ VP+HLRNAPT+LMK++ YGKGY Y D+ +A +
Sbjct: 335 SNAGYMAYNKARAFVKQD--STRPVPMHLRNAPTQLMKQLDYGKGYRYAHDEEGGFAAGE 392
Query: 536 SFLPPSLE 543
+LP ++
Sbjct: 393 RYLPDGMD 400
>gi|373501092|ref|ZP_09591459.1| hypothetical protein HMPREF9140_01577 [Prevotella micans F0438]
gi|371950683|gb|EHO68537.1| hypothetical protein HMPREF9140_01577 [Prevotella micans F0438]
Length = 421
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 256/427 (59%), Gaps = 36/427 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D +GQ HL+ ++LR + + R+ S I WGPPG GKTTLA+ I +
Sbjct: 3 PLAERMRPHTLEDYIGQQHLVGEGAVLRKMIEAGRVSSFILWGPPGVGKTTLAQIIAKRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E AR R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIEKARNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC+V L L + ++N +++ V
Sbjct: 121 KGIVTLIGATTENPSFEVIRPLLSRCQVYVLKSLD-------KDDLLALLHNAITRDVEL 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +N + GDAR LN LE+ V + + VE DE
Sbjct: 174 QKKHINLKQTGAILRYSGGDARKLLNILELL---------VDDAETVEITDEM------- 217
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+E Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 218 -------VEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPQ 270
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++ A+ED+GLA+P AL A + + A +G PE + LA+ V YLA +PKS S
Sbjct: 271 FIARRVIISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEAVVYLATSPKSNSA 330
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y + AA ++ S N+ VPLHLRNAPTKLM E+GYG GY Y+ D PS +Q +LP
Sbjct: 331 YMGIDAALSEVKAS--GNQPVPLHLRNAPTKLMNELGYGDGYKYSHDYPSHFVEQQYLPD 388
Query: 541 SLEGYKF 547
SL +F
Sbjct: 389 SLTNKRF 395
>gi|312795386|ref|YP_004028308.1| ATPase AAA [Burkholderia rhizoxinica HKI 454]
gi|312167161|emb|CBW74164.1| ATPase, AAA family [Burkholderia rhizoxinica HKI 454]
Length = 438
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 196/434 (45%), Positives = 264/434 (60%), Gaps = 42/434 (9%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
D+ TA+ PL+ER+RP I++V+GQ HLL N LR A S S+I WGPPG GK
Sbjct: 4 DTRTAV-----PLAERLRPKTIDEVIGQRHLLGENKPLRVAFESGEPHSMILWGPPGVGK 58
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TTLA+ + + A +F+ LSAV SGVKD+R+AV+ A+ R + ++T++FVDEVHRFNK
Sbjct: 59 TTLARLM--AAAFHAEFIALSAVLSGVKDIREAVDLAQAHRAR-GRQTLVFVDEVHRFNK 115
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
SQQD+FLP +E G VF+GATTENPSF + + LLSR V L L H+ LL+RA +
Sbjct: 116 SQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLDDHEQRALLERAFAE 175
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+ GL+ + A + L + DGD R LN +EI A AA R + +
Sbjct: 176 LGGGLT---------ITDSARDALIGSADGDGRKLLNNVEIVA-RAAYRAKTTSIDD--- 222
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
TL A A + +D+ G+ Y+ ISALHKS+RG+ D A+YWL
Sbjct: 223 --------------TLLGAALADNLRR--FDKGGDAFYDQISALHKSVRGSHPDGALYWL 266
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG P Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ V
Sbjct: 267 CRMLDGGADPRYLARRIVRMAWEDIGLADPRAARIALDASETYERLGTPEGELALAQAVL 326
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLA+APKS + Y A AA++ + S ++ VP+HLRNAPTKLMKE+GYG Y Y D+P
Sbjct: 327 YLAVAPKSNAGYNAYNAARRFV--SQDRSRAVPVHLRNAPTKLMKELGYGHAYRYAHDEP 384
Query: 532 ---SAKQSFLPPSL 542
+A +++LP +
Sbjct: 385 DAYAAGETYLPDGM 398
>gi|406915720|gb|EKD54773.1| hypothetical protein ACD_60C00045G0012 [uncultured bacterium]
Length = 439
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/423 (44%), Positives = 258/423 (60%), Gaps = 31/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++ GQ HLL+ LR + L S+IFWGPPGTGKTTLA+ + + V
Sbjct: 11 PLAARMRPQTLDQFAGQSHLLAEGKPLRKTILQGVLHSMIFWGPPGTGKTTLAQLMAHRV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F +SAV SGVKD+R V++A++ R K + T+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 KA--RFQKMSAVFSGVKDIRAVVDEAKEARAK-GQTTILFVDEVHRFNKSQQDAFLPFVE 127
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++VFIGATTENPSF L LLSR RV L L ++ ++++A++D GL
Sbjct: 128 EGTLVFIGATTENPSFELNNALLSRTRVYVLKRLSEDELLQVIQQALEDKERGLGNIAFD 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + L DGDAR ALN LE+ + A +Q+D
Sbjct: 188 FPIELQ----KILVQAADGDARQALNLLEVLSDFA-----------FDQKDNR------- 225
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT + E Q +D+ GE Y+ ISALHK++RG+ DA +YW ARML+GG PL
Sbjct: 226 -IVTRELLTEVIQQNLRRFDKGGEAFYDQISALHKAVRGSSPDATLYWFARMLDGGCDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR++R ASED+G ADP L A++ LG PE + +AQ + YLA+APKS ++
Sbjct: 285 YIARRVIRMASEDIGNADPRGLEIALNACSIYERLGSPEGELAIAQALVYLAVAPKSNAV 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT---PDDPSAKQSFLP 539
Y A A + +E + VPLHLRNAPTKLMK +GYGK Y Y PD +A +++ P
Sbjct: 345 YTAFQQAMRDAKEWGSLD--VPLHLRNAPTKLMKNLGYGKEYRYAHHEPDAYAAGETYFP 402
Query: 540 PSL 542
+
Sbjct: 403 EEM 405
>gi|288927100|ref|ZP_06420988.1| ATPase, AAA family [Prevotella buccae D17]
gi|288336127|gb|EFC74520.1| ATPase, AAA family [Prevotella buccae D17]
Length = 419
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 255/423 (60%), Gaps = 33/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D VGQ HL+ P ++LR + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERMRPRTLDDYVGQQHLVGPGAVLRRMIEGGRISSFILWGPPGVGKTTLAQIIANRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A + R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 KTP--FYTLSAVTSGVKDVREVIERAGRNRFFDSLSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL+ D+ LL RAV + + +
Sbjct: 121 KGVVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKEDLLRLLHRAVTEDTELRKRDIRL 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T+ + L GDAR LN LE+ E+ G +P V
Sbjct: 181 TQTDA-------LLRYSGGDARKLLNILELVV-------------------EACGDAPTV 214
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T +E Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 215 E-ITDRLVEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPK 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + +G PE + LA+ YLA +PKS S
Sbjct: 274 FIARRLVISAAEDIGLANPNALLLANAAFDTVTKIGWPEGRIPLAEAAVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y + AA ++R++ N VPLHLRNAPTKLM ++GY GY Y D P Q +LP
Sbjct: 334 YLGIDAALALVRQT--GNLPVPLHLRNAPTKLMADLGYHDGYKYPHDYPGHFTPQQYLPD 391
Query: 541 SLE 543
L+
Sbjct: 392 ELK 394
>gi|431931761|ref|YP_007244807.1| AAA ATPase [Thioflavicoccus mobilis 8321]
gi|431830064|gb|AGA91177.1| AAA ATPase [Thioflavicoccus mobilis 8321]
Length = 454
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 265/423 (62%), Gaps = 31/423 (7%)
Query: 111 VDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTG 170
VD++ P APL+ERMRP ++++ GQ+HLL LR A+ +RL S+I WGPPG+G
Sbjct: 5 VDNSLGDPAPFAPLAERMRPRTLDELQGQEHLLGEGKPLRQAIVRDRLHSMILWGPPGSG 64
Query: 171 KTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
KTTLA+ + + FV LSAV +GVKDVR+AV +AR+ R + ++ T+LF+DEVHRFN
Sbjct: 65 KTTLARLVARQSGCA--FVKLSAVLAGVKDVREAVAEARRRRAEEDRGTILFIDEVHRFN 122
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
K QQD+FLP +EDG+++FIGATTENPSF L LLSR RV L L P + +L A+
Sbjct: 123 KGQQDAFLPHVEDGTLIFIGATTENPSFELNNALLSRARVYLLQALAPEVLGRILDAALA 182
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
D GL G ++++ +A L DGDAR LN LE++A
Sbjct: 183 DRERGL----GERGLQLSDEARPALAEAADGDARRGLNLLELAAQL-------------- 224
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYW 410
+DG +A VT E +D+ G+ Y+ ISALHKS+RG+ DAA+YW
Sbjct: 225 ----TDGPQIGIAAVT-----EVVTGSLRRFDKGGDIFYDQISALHKSVRGSAPDAALYW 275
Query: 411 LARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCV 470
LARML+GG PLY+ARR++R ASED+G ADP AL A+ + LG PE + LAQ V
Sbjct: 276 LARMLDGGCDPLYVARRILRMASEDIGNADPRALALALDAWDVQQRLGSPEGELALAQAV 335
Query: 471 AYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD 530
Y+A A KS ++Y+A AA R S ++ VP+HLRNAPT+LMKE+GYG+ Y Y D+
Sbjct: 336 VYMACAAKSNAVYKAWSAALADARRSGSRD--VPIHLRNAPTRLMKELGYGRRYRYAHDE 393
Query: 531 PSA 533
P A
Sbjct: 394 PEA 396
>gi|121606099|ref|YP_983428.1| recombination factor protein RarA [Polaromonas naphthalenivorans
CJ2]
gi|120595068|gb|ABM38507.1| Recombination protein MgsA [Polaromonas naphthalenivorans CJ2]
Length = 432
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 258/425 (60%), Gaps = 34/425 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP N+ +V+GQ HLL LR A S S I WGPPG GKTT+A+ + +
Sbjct: 7 HPPLAERLRPKNLGEVIGQQHLLGEGLPLRIAFESGEPHSCILWGPPGVGKTTIARLMAS 66
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
S F+ +SAV GVKD+R+AVE A + + +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 67 SF--DAHFITISAVLGGVKDIREAVEQATIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPH 124
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G FIGATTENPSF + + LLSR V L PL D++ ++ R LS+
Sbjct: 125 VESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLTEDDLKQIIARV-------LSERA 177
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ +A++ L + DGDAR LN LE ++ A + ++ G +
Sbjct: 178 LPAIETIAVEAVDRLVAYADGDARRLLNTLESLSVAA-------------RAEKITGVTD 224
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L L + + YD+ GE+ Y+ ISALHKS+RG+D +AA+YW RML+GG +
Sbjct: 225 AWLLKVLGE-------RLRRYDKGGEKFYDTISALHKSVRGSDPNAALYWFMRMLDGGAE 277
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P Y+ARRL+R ASED+GLADP AL A+ + LG PE + LAQCV YLA+APKS
Sbjct: 278 PRYMARRLIRMASEDIGLADPRALRLALDAAEVYERLGSPEGELALAQCVVYLAVAPKSN 337
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y+A A+ I++ VPLHLRNAPTKLMKE+ YGK Y Y D+ +A +++
Sbjct: 338 AVYQAFNEAKAFIKKD--GTRPVPLHLRNAPTKLMKELDYGKNYRYAHDEDGGFAAGENY 395
Query: 538 LPPSL 542
P +
Sbjct: 396 FPEGM 400
>gi|161485694|ref|NP_637341.2| recombination factor protein RarA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|162017102|ref|YP_243284.2| recombination factor protein RarA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991669|ref|YP_001903679.1| recombination factor protein RarA [Xanthomonas campestris pv.
campestris str. B100]
gi|167733429|emb|CAP51630.1| ATPase [Xanthomonas campestris pv. campestris]
Length = 456
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 252/416 (60%), Gaps = 33/416 (7%)
Query: 117 LHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
LHV + PL+ERMRP ++++VGQ LL+ +S LR AV S R+ S+I WGPPG GKTT
Sbjct: 15 LHVDRSAMGPLAERMRPRTLDEMVGQKRLLAADSALRRAVESGRVHSMILWGPPGCGKTT 74
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
LA + + +K +SAV SG+ DVR + +A + R S +RTVLFVDEVHRFNK+Q
Sbjct: 75 LALLLAHYADAEFK--AISAVLSGLPDVRQVLAEAAQ-RFASGRRTVLFVDEVHRFNKAQ 131
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALHDAE 191
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
GL + ++V+ ++ + S DGD R AL LEI+A A
Sbjct: 192 RGLGQET----IQVSEASLLEIASAADGDVRRALTLLEIAAELAT--------------G 233
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
E +P L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL R
Sbjct: 234 EGGEITPRTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTR 286
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YL
Sbjct: 287 MLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
A KS + Y A A+ +R S Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 347 ASTAKSNAGYAAFNQAKAEVRASGTQE--VPLHLRNAPTKLMKTLGYGQDYQYDHD 400
>gi|325927614|ref|ZP_08188843.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
gi|325541981|gb|EGD13494.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
Length = 457
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 252/416 (60%), Gaps = 33/416 (7%)
Query: 117 LHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173
LHV + PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTT
Sbjct: 15 LHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTT 74
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
LA + + +K +SAV SG+ +VR + A + R +RTVLFVDEVHRFNK+Q
Sbjct: 75 LALLLAHYADAEFK--AISAVLSGLPEVRQVLAGAAQ-RFAGGRRTVLFVDEVHRFNKAQ 131
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D
Sbjct: 132 QDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAE 191
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
GL G ++V+ ++ + S DGD R AL LEI+A AA
Sbjct: 192 RGL----GAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA--------------G 233
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
E +P L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL R
Sbjct: 234 EGGEITPQTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTR 286
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
ML+GG P Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YL
Sbjct: 287 MLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYL 346
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
A KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 347 ASTAKSNAGYAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQDYQYDHD 400
>gi|325273411|ref|ZP_08139666.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
gi|324101456|gb|EGB99047.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
Length = 441
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 259/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVDRALTE-----DRGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V DA + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 EMLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALGLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYMGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P +LE
Sbjct: 398 YFPDALE 404
>gi|397172064|ref|ZP_10495460.1| recombination factor protein RarA [Alishewanella aestuarii B11]
gi|396086406|gb|EJI84020.1| recombination factor protein RarA [Alishewanella aestuarii B11]
Length = 447
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 262/423 (61%), Gaps = 33/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP + D VGQ HLL+ S L+ A+ + R+ S+I WGPPGTGKTTLA+ I
Sbjct: 14 PLAARLRPRQLADYVGQQHLLAAGSPLQQAILAGRVHSLILWGPPGTGKTTLAELIAGHA 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVT+G+K++RD+++ A+ + + +RT+LFVDEVHRFNK+QQD+FLP IE
Sbjct: 74 QAQMQ--RLSAVTAGIKEIRDSIQQAKLHQQQYQQRTLLFVDEVHRFNKAQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENP+F L +LSR RV L PL D++ +L RA+ D GL G
Sbjct: 132 DGTIIFIGATTENPAFALNNAILSRARVCVLKPLTEADLQQVLARALTDAELGL----GA 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + A + L +GDAR LN LE A AA P E
Sbjct: 188 QQLTLEPAAEQLLLRLANGDARRLLNLLEQLAELAA---PQSE----------------- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T+ ++ + +DR G+ Y+LISALHKS+RG+D DAA+YW AR+L GG PL
Sbjct: 228 --LTVAQVQQIVPQQLPGFDRDGDLFYDLISALHKSVRGSDPDAALYWFARILAGGGDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP AL A++ + +G E +AQ + YLALAPKS ++
Sbjct: 286 YVARRLLAIASEDIGNADPRALTLALNAWDTFSRVGPAEGERAIAQALVYLALAPKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+ ++ E + VPLHLRNAPT L +++G+G GY Y D+P +A + +LP
Sbjct: 346 YLAFNQAKALVAER--PDYPVPLHLRNAPTALQQQLGHGAGYRYAHDEPGAYAAGERYLP 403
Query: 540 PSL 542
L
Sbjct: 404 AEL 406
>gi|347820698|ref|ZP_08874132.1| recombination factor protein RarA [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 454
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 198/434 (45%), Positives = 257/434 (59%), Gaps = 42/434 (9%)
Query: 115 TALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL 174
TA H PL+ER+RP + +VVGQ HLL LR A S R S I WGPPG GKTT+
Sbjct: 11 TAASCLHQPLAERLRPRALGEVVGQQHLLGAGMPLRLAFESGRPHSCILWGPPGVGKTTI 70
Query: 175 AKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQ 233
A+ + A +F+ +SAV GVKD+R+AVE A R +RT++FVDEVHRFNKSQ
Sbjct: 71 ARLMAG--AFDAQFISISAVLGGVKDIREAVERAEAARDGLMRQRTIVFVDEVHRFNKSQ 128
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE--ILLKRAVDD 291
QD+FLP +E G FIGATTENPSF + + LLSR V L PL D+ ++L +A D
Sbjct: 129 QDAFLPHVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQPLSVQDLRRIVVLAQAADA 188
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+ V AIE L + DGDAR LN LE ++ A + ++
Sbjct: 189 LP------------AVEDAAIERLTAYADGDARRLLNTLETLSMAA---------TQQQR 227
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
E SD E + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL
Sbjct: 228 EQISDAW-----------LLEVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDAALYWL 276
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
RML+GG P Y+ARRLVR A+EDVGLADP AL A+ + LG PE + LA+CV
Sbjct: 277 VRMLDGGADPRYMARRLVRMAAEDVGLADPRALRLALDASEVYERLGSPEGELALAECVL 336
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP 531
YLA+APKS ++Y A AA+ + + VPLHLRNAPT+LMK + YG+GY Y D+
Sbjct: 337 YLAVAPKSNAVYTAYNAARAWVAKD--GTRPVPLHLRNAPTRLMKTLDYGRGYRYAHDEE 394
Query: 532 ---SAKQSFLPPSL 542
+A +++LP +
Sbjct: 395 GGFAAGENYLPQGM 408
>gi|422652550|ref|ZP_16715332.1| recombination factor protein RarA [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330965615|gb|EGH65875.1| recombination factor protein RarA [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 440
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----DRGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ +N + L + DGD R LN LE ++ A DG +
Sbjct: 185 RKLTLNDEGFAMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDL 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|260906747|ref|ZP_05915069.1| recombination factor protein RarA [Brevibacterium linens BL2]
Length = 421
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/411 (45%), Positives = 249/411 (60%), Gaps = 39/411 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP ++ DV+GQDHLL ++ + V RL S++ WGPPG GKTT+A+ +
Sbjct: 10 PLADRLRPESLEDVIGQDHLLGDDAPIGRMVAERRLVSMVLWGPPGCGKTTIARLLAERT 69
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ V SA SGV ++R + A K R + + T+LFVDE+HRFN++QQDSFLP +E
Sbjct: 70 NLVFESV--SATFSGVAELRKVFQSAAKRR-EIGQGTMLFVDEIHRFNRAQQDSFLPYVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+IV +GATTENPSF L + LLSRC+V L L + L+ RA + L
Sbjct: 127 DGTIVLVGATTENPSFELNSALLSRCQVFVLKRLDEEALTTLITRAEETTERELP----- 181
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ A L + DGD R LN +EQ G
Sbjct: 182 ----LDAQARHALVAMADGDGRYLLNL-------------------IEQLQTVSGALDTS 218
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
LV L Q + YD+A E HYNLISALHKSMRG+D DA++YWLARMLEGGE PL
Sbjct: 219 GLVDL------VQQRAPIYDKAQEGHYNLISALHKSMRGSDPDASLYWLARMLEGGEDPL 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRLVRFA+ED+ +ADP A+ QA++ + LG PE + +AQ V YLA APKSI++
Sbjct: 273 YIARRLVRFANEDIAIADPQAIQQALAAWDVFERLGSPEGELAIAQAVVYLATAPKSIAV 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
YR AA+K+ +++ P ++ NAPTKLMK +GYG+GY Y PD P
Sbjct: 333 YRGFNAAKKLAKQTGSLMP--PANILNAPTKLMKNLGYGEGYEYDPDRPGG 381
>gi|387771591|ref|ZP_10127749.1| recombination factor protein RarA [Haemophilus parahaemolyticus
HK385]
gi|386908451|gb|EIJ73144.1| recombination factor protein RarA [Haemophilus parahaemolyticus
HK385]
Length = 445
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 265/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PLS RMRP + + GQ HL++ L+ A+ R S+IFWGPPGTGKTTLA+ I + +
Sbjct: 14 PLSARMRPRTLAEYRGQTHLIAEGKPLQKAISMQRAHSMIFWGPPGTGKTTLAEIIAHHL 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSG+K++R+A++ A KL ++ +RTVLFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 NAEVE--RLSAVTSGIKEIREAIDKA-KLNQQTGRRTVLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR R+ L PL+ D+ +L++A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRARIYILKPLQKQDILSVLEQALTDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ L +GDAR ALN LE+ + A E + G
Sbjct: 187 ETFVLEDEVLDLLADYVNGDARYALNCLELMSDMA--------------ETTAKGKLLNK 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L+T E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 233 SLLT-----EILGERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGCDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQIAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD---PSAKQSFLP 539
Y A A+++ +E ++ VP HLRNAPT+LMK +GYG Y Y ++ +A +++ P
Sbjct: 348 YTAFNEAKRLAKEE--KDYDVPEHLRNAPTQLMKSLGYGDEYRYAHNELNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 406 PELKDTAF 413
>gi|148828420|ref|YP_001293173.1| recombination factor protein RarA [Haemophilus influenzae PittGG]
gi|148719662|gb|ABR00790.1| outer-membrane lipoprotein carrier protein precursor [Haemophilus
influenzae PittGG]
Length = 446
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQCI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + AVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERIF--AVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++A++D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQILQQAIEDPKRGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE+D
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETDNGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTREGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELQDTQY 414
>gi|375259973|ref|YP_005019143.1| recombination factor protein RarA [Klebsiella oxytoca KCTC 1686]
gi|397657047|ref|YP_006497749.1| Holliday junction DNA helicase [Klebsiella oxytoca E718]
gi|402842587|ref|ZP_10890999.1| replication-associated recombination protein A [Klebsiella sp.
OBRC7]
gi|423102238|ref|ZP_17089940.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5242]
gi|365909451|gb|AEX04904.1| recombination factor protein RarA [Klebsiella oxytoca KCTC 1686]
gi|376389821|gb|EHT02510.1| replication-associated recombination protein A [Klebsiella oxytoca
10-5242]
gi|394345558|gb|AFN31679.1| Holliday junction DNA helicase [Klebsiella oxytoca E718]
gi|402279529|gb|EJU28314.1| replication-associated recombination protein A [Klebsiella sp.
OBRC7]
Length = 447
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A+ D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTSDDIEQVLNQAMSDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A V +VE E G
Sbjct: 188 QNIVLPDETRKAIADLVNGDARRALNTLEMMADMAEADASGNRVLKVELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|398847820|ref|ZP_10604702.1| AAA ATPase [Pseudomonas sp. GM84]
gi|398251184|gb|EJN36460.1| AAA ATPase [Pseudomonas sp. GM84]
Length = 441
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 259/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+ + VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSNLGEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDDVALRKLVDRALSE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +A + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDEAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGGEISV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + Y+A APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYIACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYMGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPDQLE 404
>gi|373469200|ref|ZP_09560408.1| ATPase, AAA family [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
gi|371764879|gb|EHO53245.1| ATPase, AAA family [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
Length = 440
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/431 (42%), Positives = 269/431 (62%), Gaps = 28/431 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ R+RP +++ +VGQ+H+L + L A+ +++L SIIF+GPPG GKTT+AK I N+
Sbjct: 16 APLASRLRPDSLDMIVGQEHILGKDKFLYRAIKADKLSSIIFFGPPGCGKTTIAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
++K ++A T+G K++ +A+ +A+ K+T+LF+DE+HRFNKSQQD LP +
Sbjct: 76 TKSNFK--QINATTAGKKEMEEAISEAKVSFSMYKKKTILFIDEIHRFNKSQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + L+SR RVL L L D+E +L +A+ D G+ G
Sbjct: 134 EDGTIILIGATTENPFFEVNKALISRSRVLELKSLSYSDIESILNKAIKDKERGM----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++++ DAIEF+ N DGDAR ALNALE++ +T + +DG
Sbjct: 190 KYELDISEDAIEFISRNADGDARSALNALELAILTTDI--------------STDGKIH- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ ++ E Q K L YD+ G HY+ ISA KSMRG+D DA +Y+LA+ML GE
Sbjct: 235 ---IDINIISECIQKKVLKYDKDGNGHYDTISAFIKSMRGSDPDATMYYLAKMLYAGEDI 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR+V A+EDVGLAD AL A + + A +GMPE +ILA+ Y+A APKS +
Sbjct: 292 KFIARRIVICAAEDVGLADANALCVATNAFLAVERVGMPEARIILAEAANYVACAPKSNA 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
Y A+ AA K ++E++ + VP H+RNA + K++G G GY Y D + KQ +LP
Sbjct: 352 SYLAINAALKFVQENIDYD--VPKHIRNANYEGEKDLGTGVGYKYAHDYKNHYVKQQYLP 409
Query: 540 PSLEGYKFLDW 550
++ FL+
Sbjct: 410 DEIKDSVFLNL 420
>gi|291550085|emb|CBL26347.1| ATPase related to the helicase subunit of the Holliday junction
resolvase [Ruminococcus torques L2-14]
Length = 438
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/430 (43%), Positives = 270/430 (62%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRPV +++VVGQ H++ + LL A+ +++L S+IF+GPPGTGKTTLAK I ++
Sbjct: 16 SPLASRMRPVTLDEVVGQKHIIGKDKLLYRAIKADKLSSLIFYGPPGTGKTTLAKVIAHT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +K ++A +G KD+ + V++A+ L+ K+T+LF+DE+HRFNK QQD LP +
Sbjct: 76 TSAEFK--QINATVAGKKDMEEVVKEAKDLQGMYGKKTILFIDEIHRFNKGQQDYLLPFV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR + L PL+ D++ LL RAV+D GL G
Sbjct: 134 EDGTLILIGATTENPYFEVNGALISRSSIFELRPLEKTDIKELLLRAVNDTEKGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ DA+EFL GDAR ALNA+E+ +T D S+ +
Sbjct: 190 SFHAVIEDDALEFLADVSGGDARNALNAIELGVLTT---------------DRSEDGQIH 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ TLD A E Q + + YD+ G+ HY++ISA KSMRG+D DAA+++LA+ML GE
Sbjct: 235 I---TLDVASECIQKRVVNYDKKGDNHYDIISAFIKSMRGSDPDAAVFYLAKMLYAGEDV 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AV+ QA +GMPE +IL+Q V Y+A APKS S
Sbjct: 292 KFIARRIMICASEDVGNADPMALTVAVAAAQAVERIGMPESQIILSQAVTYVASAPKSNS 351
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA +R + VP HL++A K +++G+G GY Y D P+ Q +LP
Sbjct: 352 AVNAIFAANDAVRNN---KTTVPTHLQDAHYKGAQKLGHGTGYKYAHDYPNHYVDQQYLP 408
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 409 DEIKDARFYE 418
>gi|326480926|gb|EGE04936.1| AAA family ATPase [Trichophyton equinum CBS 127.97]
Length = 551
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/458 (42%), Positives = 272/458 (59%), Gaps = 37/458 (8%)
Query: 96 IEPSPLFKRLKTR--HDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAV 153
+ P+PL R V S+ AL APL+ERMRP ++++ GQ+ L+ N +LR +
Sbjct: 113 VPPAPLHDSGNDRSAKRVKSSNALQ-KSAPLAERMRPRTLDEMCGQE-LVGENGVLRGLI 170
Query: 154 CSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
+R+PS+I WG GTGKTTLA+ I + V +FV +++ +SGV + + +A+
Sbjct: 171 ERDRVPSMILWGSAGTGKTTLARVIAS--MVGSRFVEINSTSSGVAECKKLFAEAKNELS 228
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTL 273
+ ++T++F DE+HRF+KSQQD FL +E G + IGATTENPSF + LLSRCR TL
Sbjct: 229 LTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTL 288
Query: 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333
L ++ +L RA+ S S V+ + I++L + DGDAR ALN LE++
Sbjct: 289 AKLTEENICAILNRALRVEGPNYSPSA-----LVDDELIKYLAAFADGDARTALNLLELA 343
Query: 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLIS 393
++ Q + +T D+ K++ + L YDRAG++HY+ IS
Sbjct: 344 M-------------DLSQREN----------MTKDELKKSL-TRTLVYDRAGDQHYDTIS 379
Query: 394 ALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQA 453
A HKS+RG+D DA++Y+LARM++ GE PLYIARRL+ ASEDVGLAD L+ A + Y A
Sbjct: 380 AFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLADNTMLSLATAAYTA 439
Query: 454 CHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTK 513
+G+PE + LA LALAPKS YR L A + E +P+HLRNAPT+
Sbjct: 440 VEKIGLPEARINLAHATVALALAPKSTRAYRGLANAMASLEEPGIAGLPIPIHLRNAPTR 499
Query: 514 LMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
LMKEIGYGK Y Y PD D A Q +LP L G FL+
Sbjct: 500 LMKEIGYGKEYKYNPDYKDGKAVQDYLPDKLIGRSFLE 537
>gi|325856575|ref|ZP_08172242.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
gi|325483423|gb|EGC86397.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
Length = 406
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 261/424 (61%), Gaps = 38/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D +GQ HL+ ++LR + S R+ S I WGPPG GKTTLA+ I + +
Sbjct: 3 PLAERMRPRTLDDYIGQQHLVGEGAVLRRMIDSGRIASFILWGPPGVGKTTLAQIIAHRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIERAQNGRFFNSASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L PL+ D+ LL+RAV + + L K
Sbjct: 121 KGTVTLIGATTENPSFEVIRPLLSRCQLYVLKPLEKDDLLTLLQRAVAE-DTELKKR--- 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + L GDAR LN LE+ A DG
Sbjct: 177 ---HIDLHETDALLRYSGGDARKLLNILELIVDAA-----------------PDGT---- 212
Query: 363 ALVTLDD--AKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
VT+ D +E Q LAYD+ GE HY++ISA KS+RG+D +AA+YW+ARM+EGGE
Sbjct: 213 --VTVTDRIVEERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPEAALYWMARMIEGGED 270
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARR+V A+ED+GLA+P AL A + + A +G PE + LA+ V YLA + K
Sbjct: 271 PKFIARRVVISAAEDIGLANPNALLLANAAFDAVTKIGWPEGRIPLAEAVVYLARSKKDN 330
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y+A+ A +++R + N VPLHLRNAPTKLMK++GY GY Y D P +Q ++
Sbjct: 331 SAYKAINEALELVRRT--GNLPVPLHLRNAPTKLMKDLGYSDGYKYPHDYPGHYVEQQYM 388
Query: 539 PPSL 542
P +L
Sbjct: 389 PDAL 392
>gi|304382033|ref|ZP_07364585.1| replication-associated recombination protein A [Prevotella marshii
DSM 16973]
gi|304336787|gb|EFM03011.1| replication-associated recombination protein A [Prevotella marshii
DSM 16973]
Length = 430
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/434 (44%), Positives = 258/434 (59%), Gaps = 48/434 (11%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D +GQ HL+ +LR + + R+ S I WGPPG GKTTLA+ I + +
Sbjct: 4 PLAERMRPSTLEDYIGQKHLVGEGGVLRRMIEAKRVSSFILWGPPGVGKTTLAQIIAHQM 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 EVP--FYTLSAVTSGVKDVREVIERAKSGRFFSQGSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L L+ D+ L++RA+
Sbjct: 122 QGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLALVERAIT------------ 169
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T VE++ +IE L GDAR LN LE+ V + E+D
Sbjct: 170 TDVELSKRSIELRQTGALLRYSGGDARKLLNILEL----------------VAEASEAD- 212
Query: 358 CSPYVALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415
+ +DD + + Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+
Sbjct: 213 ------TLVIDDERVTDCLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMI 266
Query: 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLAL 475
EGGE P++IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA
Sbjct: 267 EGGEDPVFIARRLVISAAEDIGLANPNALLLANAAFDAVTKIGWPEGRIPLAEAAVYLAT 326
Query: 476 APKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--A 533
+PKS S Y + AA +R S N+ VPLHLRNAPT+LM +GY GY Y D
Sbjct: 327 SPKSNSAYLGINAALSEVRNS--GNKPVPLHLRNAPTQLMASLGYADGYQYPHDYQGHFT 384
Query: 534 KQSFLPPSLEGYKF 547
KQ +LP L +F
Sbjct: 385 KQQYLPDDLATARF 398
>gi|399026804|ref|ZP_10728442.1| AAA ATPase [Flavobacterium sp. CF136]
gi|398075568|gb|EJL66674.1| AAA ATPase [Flavobacterium sp. CF136]
Length = 425
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 256/426 (60%), Gaps = 35/426 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ER+RP + D + Q HL+ PN L + +PS+IFWGPPGTGKTTLA+ I
Sbjct: 2 EAPLAERIRPQKLEDYISQSHLVGPNGSLTQQISKGIIPSLIFWGPPGTGKTTLAQIIAQ 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F LSA+ SGVKD+RD +E A++ + + K +LF+DE+HRF+KSQQDS L
Sbjct: 62 ES--KRPFYILSAINSGVKDIRDVIEKAKQSGGLFTAKNPILFIDEIHRFSKSQQDSLLA 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G I IGATTENPSF +I LLSRC+V LN +D+E LL+RA+ + SK
Sbjct: 120 AVEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFSKNDLENLLRRAIKTDSELASKK 179
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ E L GD R LN E+ V SD
Sbjct: 180 IVLKETEA-------LLRLSGGDGRKLLNIFEL----------------VVNASSSDQI- 215
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++T D E Q + YD+ GE+HY+++SA KS+RG+D + A+YWLARM+EGGE
Sbjct: 216 ----IITNDRVFELVQQNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARR++ +SED+G A+P A A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 272 DVKFIARRMLILSSEDIGNANPTAFIMANNTFQAVSAIGYPESRIILSQCAIYLATSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
+ Y A+G AQ+++++ + VP+HLRNAPTKLMKE+GYG Y Y+ D + A+Q F
Sbjct: 332 NASYMAIGNAQQLVKQM--GDLPVPIHLRNAPTKLMKELGYGDEYKYSHDYANNFAEQEF 389
Query: 538 LPPSLE 543
LP +++
Sbjct: 390 LPEAIK 395
>gi|373468129|ref|ZP_09559412.1| recombination factor protein RarA [Haemophilus sp. oral taxon 851
str. F0397]
gi|371756522|gb|EHO45329.1| recombination factor protein RarA [Haemophilus sp. oral taxon 851
str. F0397]
Length = 446
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQTHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN+LE+ V+ DE++
Sbjct: 189 -RLILEDNLLQVLAEYVNGDARLALNSLELM---------------VDMADETENGKKID 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 233 RILL----KEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKEFGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
L+ ++
Sbjct: 407 SELKDTQY 414
>gi|374813018|ref|ZP_09716755.1| recombination factor protein RarA/unknown domain fusion protein
[Treponema primitia ZAS-1]
Length = 765
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/431 (43%), Positives = 264/431 (61%), Gaps = 28/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
PL++RMRP ++DVVGQDH++ P LLR A+ ++RL S+IF+GPPGTGKT+LA+ I N
Sbjct: 18 QGPLADRMRPRTLDDVVGQDHIVGPGRLLRRAIQADRLSSVIFYGPPGTGKTSLARVIAN 77
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +++ L+AV +G+KD+R+A++ + + R KRT+LFVDEVHR+NK+QQD+ LP
Sbjct: 78 TTRSTFE--SLNAVLAGIKDIREAIDRSDERRRLYGKRTILFVDEVHRWNKAQQDALLPW 135
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+++ +GATTENP F + L+SR R+ L PL + L+ A D +
Sbjct: 136 VENGTVILVGATTENPFFEVNRALVSRSRIFQLKPL----TTVNLREAADRTLADRERGY 191
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G RV A+E L GDAR LNALE+ AI +V P E E+
Sbjct: 192 GKWRVSFEEGALEHLVEVAGGDARSLLNALEL-AIETSVPWPPMEGTEIH---------- 240
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V + A+E+ Q + + YDR G+ H++ ISA KS+RG+D DAA+YWLA+M+ GE
Sbjct: 241 ----VGFEAAEESIQRRAVLYDRDGDYHFDTISAFIKSVRGSDPDAALYWLAKMVRAGED 296
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +I RR++ ASEDVGLADP A+N +SC QA +G PE N LA YLA APKS
Sbjct: 297 PSFIFRRMIILASEDVGLADPAAINVVISCAQAFDRIGFPEGNFPLAHACLYLATAPKSN 356
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
+ A +V RE + VP HLR+A ++ + G+G+GYIY D A Q +L
Sbjct: 357 TTLAFFDALAEVDRE----DAEVPSHLRDA-SRDKEGFGHGEGYIYPHAYRDHWAAQQYL 411
Query: 539 PPSLEGYKFLD 549
P +L G F +
Sbjct: 412 PTALRGKTFYN 422
>gi|260913897|ref|ZP_05920371.1| replication-associated recombination protein A [Pasteurella
dagmatis ATCC 43325]
gi|260631984|gb|EEX50161.1| replication-associated recombination protein A [Pasteurella
dagmatis ATCC 43325]
Length = 446
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 264/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTLAQYYGQSHLIGEGKPLRKAIEVGHIHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E A++ R+ S++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGVKEIREAIERAKQNRL-SDRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L + LLSR RV L L ++ +L++A+ D GL K
Sbjct: 132 DGTIIFIGATTENPSFELNSALLSRARVYVLKSLTITEITQVLRQALQDEERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN LE+ + A E+ +G
Sbjct: 189 -RFFLEENLLEMLAEYVNGDARLALNCLELMSDMA--------------EEHENGKILNR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLL-----KEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGASEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+K +E+ + VP HLRNAP+KLMK +GYG Y Y D+ +A +S+ P
Sbjct: 349 YNAFKQAKKHAQEAPDYD--VPEHLRNAPSKLMKTLGYGAEYRYAHDEENAYAAGESYFP 406
Query: 540 PSLEGYKF 547
L+ ++
Sbjct: 407 EPLKETQY 414
>gi|423213284|ref|ZP_17199813.1| hypothetical protein HMPREF1074_01345 [Bacteroides xylanisolvens
CL03T12C04]
gi|392693744|gb|EIY86974.1| hypothetical protein HMPREF1074_01345 [Bacteroides xylanisolvens
CL03T12C04]
Length = 423
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 271/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAI--TTDAVLKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V+ E E
Sbjct: 176 RKIELKETTAILRFSG--GDARKLLNILELV---------------VQSETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C++ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLLANACFETLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WQPQNNPAEQ 407
>gi|270340043|ref|ZP_06006828.2| replication-associated recombination protein A [Prevotella
bergensis DSM 17361]
gi|270332946|gb|EFA43732.1| replication-associated recombination protein A [Prevotella
bergensis DSM 17361]
Length = 424
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 268/428 (62%), Gaps = 36/428 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ+H++ +++LR V S R+ S I WGPPG GKTTLA+ I +
Sbjct: 4 PLAERLRPQTLDDYIGQEHVVGKDAVLRKMVESGRISSFILWGPPGVGKTTLAQIIAGML 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSAVTSGVKDVR+ +E A++ R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 KVP--FFTLSAVTSGVKDVREVIERAKQGRFFNSGSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L L+ D+ +L+RA+ + ++ L K
Sbjct: 122 RGVVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLMKILERAIHE-DSELKKK--- 177
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISA-ITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + + GDAR LN LE++ TA+ ++ + + K VE
Sbjct: 178 ---DIVLQEVGAIMRYSGGDARKLLNILELAVNSTASSQITITD-KLVE----------- 222
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
LV Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 223 -GLV---------QSNPLAYDKDGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDP 272
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRL+ A+ED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 273 QFIARRLIISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEAAVYLATSPKSNS 332
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ AA + +R+S N VPLH+RNAPTKLMK +GY GY Y D P KQ +LP
Sbjct: 333 AYLAIDAALREVRQS--GNLPVPLHIRNAPTKLMKSLGYSDGYQYPHDFPENFVKQQYLP 390
Query: 540 PSLEGYKF 547
+ +F
Sbjct: 391 DHITNRRF 398
>gi|293372974|ref|ZP_06619343.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f]
gi|299145353|ref|ZP_07038421.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
gi|292632042|gb|EFF50651.1| recombination factor protein RarA [Bacteroides ovatus SD CMC 3f]
gi|298515844|gb|EFI39725.1| ATPase, AAA family [Bacteroides sp. 3_1_23]
Length = 423
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 270/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ +E A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIERAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAI--TTDAILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V+ E E
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELV---------------VQSETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WQPQNNPAEQ 407
>gi|170722571|ref|YP_001750259.1| recombination factor protein RarA [Pseudomonas putida W619]
gi|169760574|gb|ACA73890.1| AAA ATPase central domain protein [Pseudomonas putida W619]
Length = 441
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 261/427 (61%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPFVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+++ + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEPALRKLVDRALNE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V DA L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLSVGDDAFRMLMAAADGDGRRMLNFLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG
Sbjct: 228 DLLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + Y+A APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYIACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG+ Y Y D+P +A +
Sbjct: 341 AVYMGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPDQLE 404
>gi|398842170|ref|ZP_10599365.1| AAA ATPase [Pseudomonas sp. GM102]
gi|398106414|gb|EJL96451.1| AAA ATPase [Pseudomonas sp. GM102]
Length = 440
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 268/429 (62%), Gaps = 36/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD-GCSPY 361
++ ++ + + L S DGD R LN LE ++ A ED S+ G
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSEIGVELL 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+L L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG P
Sbjct: 231 QSL--LGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDP 281
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS +
Sbjct: 282 LYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNA 341
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 342 VYMGFKAAIRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF 399
Query: 539 PPSLEGYKF 547
P LE +F
Sbjct: 400 PDELEPQRF 408
>gi|187923044|ref|YP_001894686.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
gi|187714238|gb|ACD15462.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
Length = 437
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 258/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAEFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L + LL+RA + +GG
Sbjct: 127 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLTDDEQRELLERA--------QQELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A A+ ++ E DG
Sbjct: 179 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAASQ----------QKTTEIDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG+ D A+YW RML+GG P
Sbjct: 227 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + S Q+ GVP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFV--SKDQSRGVPVHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
++
Sbjct: 395 DNM 397
>gi|312114760|ref|YP_004012356.1| ATPase AAA [Rhodomicrobium vannielii ATCC 17100]
gi|311219889|gb|ADP71257.1| AAA ATPase central domain protein [Rhodomicrobium vannielii ATCC
17100]
Length = 455
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 253/427 (59%), Gaps = 37/427 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL +R+RP ++ DV+GQ+HLL LR S+IFWGPPGTGKTT+A+ +
Sbjct: 32 PLPDRLRPASLGDVIGQEHLLGEGGPLRRIADGEAPRSMIFWGPPGTGKTTVARLMAKGA 91
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SA+ SGV D+R V DA K R + + T+LFVDE+HRFN+SQQDSFLP +E
Sbjct: 92 GA--HFEQISAIFSGVADLRK-VFDAAKDRQRFGQGTILFVDEIHRFNRSQQDSFLPFVE 148
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+ IGATTENPSF L LLSR +VL L ++E LL RA +SV G
Sbjct: 149 DGTIILIGATTENPSFELNGALLSRAKVLVFRRLTDDNIEQLLARA---------ESVLG 199
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + DA L DGD R ALN E + A R P + E
Sbjct: 200 KTLPLTPDARGALIGMADGDGRTALNLTE--DVFATGRDPSHPIDTAE------------ 245
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
E Q + YD+ + HY+LISALHK++RG+D DAA+YW RM++GGE PL
Sbjct: 246 -------LTEIVQRRAPLYDKNRDGHYDLISALHKAVRGSDPDAALYWFCRMIDGGEAPL 298
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP AL QA + A FLG PE + LAQCV YLA APKS +
Sbjct: 299 YLARRMVRMAVEDIGLADPNALVQANAAKDAYDFLGSPEGELALAQCVVYLATAPKSNAA 358
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y+A GAA + +ES + P H+ NAPTKLMK GYG GY+Y ++ + Q++ P
Sbjct: 359 YKAYGAAMRYAKES--GSLPPPKHILNAPTKLMKSEGYGAGYVYDHATEEGVSGQNYFPD 416
Query: 541 SLEGYKF 547
L+ +F
Sbjct: 417 GLDRAEF 423
>gi|431927164|ref|YP_007240198.1| AAA ATPase [Pseudomonas stutzeri RCH2]
gi|431825451|gb|AGA86568.1| AAA ATPase [Pseudomonas stutzeri RCH2]
Length = 441
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 267/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALSE-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ ++ + L + DGD R LN LE ++ A E G
Sbjct: 185 LQLELPEESFQMLLAAADGDGRRLLNLLENASDLA----------------EQGGT---- 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ D ++ +D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 225 --ISTDLLQDLLGDSRRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASE++G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEEIGNADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E+ Q VPLHLRNAPTKLMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAENGSQE--VPLHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
++E ++
Sbjct: 401 EAMEPRRY 408
>gi|307260915|ref|ZP_07542601.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306869482|gb|EFN01273.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 443
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 262/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMR + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 11 PLPARMRSRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 71 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 127
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G
Sbjct: 128 DGTIIFIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GN 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + IE L +GDAR ALN LE+ + A + K + +
Sbjct: 184 ESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNK-------------- 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 230 ALLA-----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++
Sbjct: 285 YVARRLLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAV 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ P
Sbjct: 345 YNAFNEAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFP 402
Query: 540 PSLEGYKF 547
P L+ F
Sbjct: 403 PELKDTVF 410
>gi|407364135|ref|ZP_11110667.1| recombination factor protein RarA [Pseudomonas mandelii JR-1]
Length = 440
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 265/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L S DGD R LN LE ++ A ED S+
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSE------ 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D + +D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG PL
Sbjct: 225 --IGIDLLQSLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE F
Sbjct: 401 EELEPQPF 408
>gi|145635701|ref|ZP_01791396.1| predicted ATPase [Haemophilus influenzae PittAA]
gi|145267024|gb|EDK07033.1| predicted ATPase [Haemophilus influenzae PittAA]
Length = 446
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++A++D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAIEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ A E+ +G
Sbjct: 189 -RLILEENLLQVLGEYVNGDARLALNCLELMVDMA--------------EETENGKKIDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 234 TLL-----KEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|423279046|ref|ZP_17257959.1| hypothetical protein HMPREF1203_02176 [Bacteroides fragilis HMW
610]
gi|424663076|ref|ZP_18100113.1| hypothetical protein HMPREF1205_03462 [Bacteroides fragilis HMW
616]
gi|404576766|gb|EKA81504.1| hypothetical protein HMPREF1205_03462 [Bacteroides fragilis HMW
616]
gi|404585215|gb|EKA89831.1| hypothetical protein HMPREF1203_02176 [Bacteroides fragilis HMW
610]
Length = 423
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 259/423 (61%), Gaps = 34/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+ +
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAITT-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ + S GDAR LN LE+ VE E E
Sbjct: 176 RKIELKETSAMLRFSG--GDARKLLNILELV---------------VESETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ FLP
Sbjct: 333 YNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQQFLPD 390
Query: 541 SLE 543
++
Sbjct: 391 EIK 393
>gi|120437189|ref|YP_862875.1| recombination factor protein RarA [Gramella forsetii KT0803]
gi|117579339|emb|CAL67808.1| AAA family ATPase [Gramella forsetii KT0803]
Length = 424
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/407 (44%), Positives = 251/407 (61%), Gaps = 34/407 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP + D + Q HL+ N L+ + +PS+IFWGPPG GKTTLA I
Sbjct: 2 NQPLAERLRPKTLEDYLSQQHLIGKNGALKQQIQQGIIPSMIFWGPPGVGKTTLANII-- 59
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ F LSA++SGVKDVR+ +E A+K + + K +LF+DE+HRF+KSQQDS L
Sbjct: 60 ATESGRPFFTLSAISSGVKDVREVIEKAKKSEGLFTTKSPILFIDEIHRFSKSQQDSLLG 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF +I+ LLSRC+V L P D+ LL+RA+ + KS
Sbjct: 120 AVEKGWVTLIGATTENPSFEVISALLSRCQVYILKPFSKEDLIALLQRAIKE-----DKS 174
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ V++ E L GDAR LN E+ +A K VE
Sbjct: 175 IASKNVKLKET--EALLRLSGGDARKLLNIFELLVTSAE--------KNVE--------- 215
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+T D Q + YD+ GE+HY++ISA KS+RG+D +AA+YWLARM+EGGE
Sbjct: 216 -----ITNDLVLSKVQQNTVLYDKTGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGGE 270
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARRL+ ASED+G A+P AL A + +QA + +G PE +IL+QCV YLA +PKS
Sbjct: 271 DVKFIARRLLILASEDIGNANPTALVIANNSFQAVNTIGYPEARIILSQCVTYLATSPKS 330
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY 526
+ Y+A+ AQ +++++ N VPL +RNAPTKLMK+IGYGK Y Y
Sbjct: 331 NAAYKAINEAQSLVKKT--GNLSVPLAIRNAPTKLMKDIGYGKDYKY 375
>gi|367471684|ref|ZP_09471289.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. ORS 285]
gi|365276003|emb|CCD83757.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. ORS 285]
Length = 444
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 262/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL ER+RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 26 PLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD-- 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SAV SGV D++ V DA + R ++ + T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 84 ATELHFEQISAVFSGVADLKK-VFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVME 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL + L +E L A +++ G
Sbjct: 143 DGTVVLVGATTENPSFELNAALLSRSRVLVFHSLDAAAIEKLYSHA---------EAIEG 193
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ DA L DGD R +L E EV ++ E
Sbjct: 194 RKLPLDDDARNVLIRMADGDGRASLTLAE-------------EVWRSARKGE-------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E Q + YD++ + HYNLISA+HKS+RG+D DAA+Y+ ARML+ GE PL
Sbjct: 233 -IFNAAQLQEILQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS +
Sbjct: 292 FLARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+A GAA++ +E G + P H+ NAPTKLM+ GYG GY Y D P A Q + P
Sbjct: 352 YKAFGAAKRAAKE--GGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAFSGQDYFPE 409
Query: 541 SLEGYKFLDWPK 552
+L +F D P+
Sbjct: 410 ALGRQQFYDPPE 421
>gi|398857304|ref|ZP_10613005.1| AAA ATPase [Pseudomonas sp. GM79]
gi|398241153|gb|EJN26812.1| AAA ATPase [Pseudomonas sp. GM79]
Length = 440
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 268/429 (62%), Gaps = 36/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD-GCSPY 361
++ ++ + + L S DGD R LN LE ++ A ED S+ G
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSEIGVDLL 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+L L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG P
Sbjct: 231 QSL--LGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDP 281
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS +
Sbjct: 282 LYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNA 341
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 342 VYMGFKAAIRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF 399
Query: 539 PPSLEGYKF 547
P LE +F
Sbjct: 400 PDELEPQRF 408
>gi|375358213|ref|YP_005110985.1| putative AAA family ATPase protein [Bacteroides fragilis 638R]
gi|383118120|ref|ZP_09938863.1| hypothetical protein BSHG_3812 [Bacteroides sp. 3_2_5]
gi|423249803|ref|ZP_17230819.1| hypothetical protein HMPREF1066_01829 [Bacteroides fragilis
CL03T00C08]
gi|423255304|ref|ZP_17236233.1| hypothetical protein HMPREF1067_02877 [Bacteroides fragilis
CL03T12C07]
gi|423257859|ref|ZP_17238782.1| hypothetical protein HMPREF1055_01059 [Bacteroides fragilis
CL07T00C01]
gi|423265173|ref|ZP_17244176.1| hypothetical protein HMPREF1056_01863 [Bacteroides fragilis
CL07T12C05]
gi|423285982|ref|ZP_17264863.1| hypothetical protein HMPREF1204_04401 [Bacteroides fragilis HMW
615]
gi|251944403|gb|EES84892.1| hypothetical protein BSHG_3812 [Bacteroides sp. 3_2_5]
gi|301162894|emb|CBW22441.1| putative AAA family ATPase protein [Bacteroides fragilis 638R]
gi|387778227|gb|EIK40323.1| hypothetical protein HMPREF1055_01059 [Bacteroides fragilis
CL07T00C01]
gi|392652304|gb|EIY45965.1| hypothetical protein HMPREF1067_02877 [Bacteroides fragilis
CL03T12C07]
gi|392655888|gb|EIY49530.1| hypothetical protein HMPREF1066_01829 [Bacteroides fragilis
CL03T00C08]
gi|392704010|gb|EIY97150.1| hypothetical protein HMPREF1056_01863 [Bacteroides fragilis
CL07T12C05]
gi|404578446|gb|EKA83168.1| hypothetical protein HMPREF1204_04401 [Bacteroides fragilis HMW
615]
Length = 423
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 198/443 (44%), Positives = 265/443 (59%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V + IE + GDAR LN LE+ VE E E
Sbjct: 169 TDVVLKERKIELKETGAMLRFSGGDARKLLNILELV---------------VESETEE-- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVIITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ
Sbjct: 328 KSNSAYNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP ++ K L P+ N ++
Sbjct: 386 QFLPDEIKA-KQLWQPQHNPAEQ 407
>gi|92117125|ref|YP_576854.1| recombination factor protein RarA [Nitrobacter hamburgensis X14]
gi|91800019|gb|ABE62394.1| Recombination protein MgsA [Nitrobacter hamburgensis X14]
Length = 446
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 196/434 (45%), Positives = 259/434 (59%), Gaps = 39/434 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
PH PL +R+RP ++DVVGQDH+L P+ L + + S++FWGPPGTGKTT+A+ +
Sbjct: 23 PH-PLPDRLRPRALSDVVGQDHILGPDGALTRMLETRTFGSLVFWGPPGTGKTTVARLLA 81
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
++ A+ F LSAV SGV D++ A DA + R +S T+LFVDEVHRFNK+QQDSFLP
Sbjct: 82 DATAL--HFEQLSAVFSGVADLKKAF-DAARARRESGTGTLLFVDEVHRFNKAQQDSFLP 138
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
V+EDG++V +GATTENPSF L LLSR RVL L +E L RA +
Sbjct: 139 VMEDGTVVLVGATTENPSFELNAALLSRARVLVFRSLDAAAIEKLFVRA---------EQ 189
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
V G + ++ +A L DGD R AL +E EV +E E
Sbjct: 190 VEGKPLPLDTEARSVLVRMADGDGRAALTLVE-------------EVWRSAREGE----- 231
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ + + Q + YD++ + HYNLISALHKS+RG+D DAA+Y+LARM + GE
Sbjct: 232 ----VFDAEQLQGVLQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMFQAGE 287
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL++ARR+VR A ED+GLADP AL + A FLG PE + +AQ V YLA APKS
Sbjct: 288 DPLFLARRVVRMAVEDIGLADPQALAICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKS 347
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
+ Y+A GAA + +E+ + P H+ NAPTKLMK GYG GY Y D P + Q +
Sbjct: 348 NAAYKAFGAAMRTAKEA--GSLLPPKHILNAPTKLMKSEGYGGGYQYDHDTPDGFSGQDY 405
Query: 538 LPPSLEGYKFLDWP 551
P +L F D P
Sbjct: 406 FPEALGRRTFYDPP 419
>gi|378774668|ref|YP_005176911.1| replication-associated recombination protein A [Pasteurella
multocida 36950]
gi|356597216|gb|AET15942.1| replication-associated recombination protein A [Pasteurella
multocida 36950]
Length = 445
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|315651448|ref|ZP_07904471.1| replication-associated recombination protein A [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486268|gb|EFU76627.1| replication-associated recombination protein A [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 440
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/452 (41%), Positives = 278/452 (61%), Gaps = 36/452 (7%)
Query: 101 LFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS 160
LF +K ++ DS APL+ R+RP +++ VVGQ+H+L + L A+ +++L S
Sbjct: 3 LFDYMKEVNEKDS--------APLASRLRPDSLDMVVGQEHILGKDKFLYRAIKADKLSS 54
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
IIF+GPPG GKTT+AK I N+ ++K ++A T+G K++ +A+ +A+ K+T+
Sbjct: 55 IIFFGPPGCGKTTIAKVIANTTKSNFK--QINATTAGKKEMEEAISEAKISISMYKKKTI 112
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHD 280
LF+DE+HRFNKSQQD LP +EDG+I+ IGATTENP F + L+SR RVL L P+ +D
Sbjct: 113 LFIDEIHRFNKSQQDYLLPFVEDGTIILIGATTENPFFEVNKALISRSRVLELKPISYND 172
Query: 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR 340
+E +L +A+ D G+ G ++++ +AIEF+ N DGDAR ALNALE++ +T +
Sbjct: 173 IESILNKAIKDKERGM----GKYELDISEEAIEFISKNADGDARNALNALELAILTTDI- 227
Query: 341 VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR 400
+DG + ++ E Q K L YD+ G HY+++SA KSMR
Sbjct: 228 -------------SADGKIH----IDINIISECIQKKVLKYDKDGNGHYDIVSAFIKSMR 270
Query: 401 GNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMP 460
G+D DA +Y+LA+ML GE +IARR+V A+EDVGLAD AL A + + A +GMP
Sbjct: 271 GSDPDATMYYLAKMLYAGEDIKFIARRIVICAAEDVGLADANALCVATNAFLAVERVGMP 330
Query: 461 ECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGY 520
E +ILA+ Y+A APKS + Y A+ +A K ++E+V VP H+RN + ++IG
Sbjct: 331 EARIILAEAANYIAGAPKSNASYLAINSALKFVKENVDYE--VPKHIRNVNYEGERDIGI 388
Query: 521 GKGYIYTPD--DPSAKQSFLPPSLEGYKFLDW 550
G GY Y D + KQ +LP ++ FL+
Sbjct: 389 GVGYKYAHDYQNHYVKQQYLPDEIKDTVFLNL 420
>gi|399003619|ref|ZP_10706279.1| AAA ATPase [Pseudomonas sp. GM18]
gi|398122378|gb|EJM11972.1| AAA ATPase [Pseudomonas sp. GM18]
Length = 440
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 268/429 (62%), Gaps = 36/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAANLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD-GCSPY 361
++ ++ + + L S DGD R LN LE ++ A ED S+ G
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDHSEIGVDLL 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+L L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG P
Sbjct: 231 QSL--LGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDP 281
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS +
Sbjct: 282 LYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNA 341
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 342 VYMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF 399
Query: 539 PPSLEGYKF 547
P LE +F
Sbjct: 400 PDELEPQRF 408
>gi|365879589|ref|ZP_09419005.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. ORS 375]
gi|365292439|emb|CCD91536.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. ORS 375]
Length = 444
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 263/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL ER+RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 26 PLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD-- 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SAV SGV D++ V DA + R ++ + T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 84 ATELHFEQISAVFSGVADLKK-VFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVME 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL + L +E L A ++V G
Sbjct: 143 DGTVVLVGATTENPSFELNAALLSRSRVLVFHSLDAAAIEKLYAHA---------EAVEG 193
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ +A L DGD R +L E EV ++ E
Sbjct: 194 RKLPLDEEARAVLIRMADGDGRASLTLAE-------------EVWRSARKGE-------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E Q + YD++ + HYNLISA+HKS+RG+D DAA+Y+ ARML+ GE PL
Sbjct: 233 -IFNAVQLQEILQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS +
Sbjct: 292 FLARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+A GAA++V +E G + P H+ NAPTKLM+ GYG GY Y D P A Q + P
Sbjct: 352 YKAFGAAKRVAKE--GGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAFSGQDYFPE 409
Query: 541 SLEGYKFLDWPK 552
+L +F D P+
Sbjct: 410 ALGRQQFYDPPE 421
>gi|116205431|ref|XP_001228526.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
gi|88176727|gb|EAQ84195.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
Length = 587
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 262/432 (60%), Gaps = 30/432 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++ V GQD L+ PN +LRS + S+R+PS+I WG GTGKTT+A+ I
Sbjct: 159 APLAERMRPDTLDHVFGQD-LVGPNGVLRSLIESDRVPSMILWGGSGTGKTTIARCIARR 217
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A ++GV + + +A + +RT++F DE+HRFNK QQD FL +
Sbjct: 218 VGC--RFIELNATSTGVAECKKLFAEAANELGLTGRRTIIFCDEIHRFNKGQQDVFLKPV 275
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV--NNGLSKS 299
E G+I IGATTENPSF + LLSRCR TL L D++ +L RA+ GL S
Sbjct: 276 EAGTITLIGATTENPSFRVQAALLSRCRTFTLQSLTEDDIQHILLRALQQEVEQEGLELS 335
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
++ + + +L S DGDAR ALN LE++ R P + + V +E
Sbjct: 336 P-----LIDQELLRYLSSFADGDARTALNLLELALSLTN-RPPSSDSEPVTKE------- 382
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ +A K L YDRAG++HY+ ISA HKS+RG+DADAA+Y+LARML+ GE
Sbjct: 383 ----------SIKAALTKTLVYDRAGDQHYDTISAFHKSVRGSDADAALYYLARMLQSGE 432
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C L LAPKS
Sbjct: 433 DPLFIARRMVVIASEDVGLADSTLLPLATAAYTATQQIGMPEARIPLAHCAVALCLAPKS 492
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSF 537
YR L A ++E VPLHLRNAPT+LM+++GYG Y Y P+ D +Q +
Sbjct: 493 TRAYRGLNNALSALQEPGVAALPVPLHLRNAPTRLMRDMGYGAEYKYPPNYRDGRVRQVY 552
Query: 538 LPPSLEGYKFLD 549
LP L G +FL+
Sbjct: 553 LPDGLVGRRFLE 564
>gi|395236074|ref|ZP_10414274.1| recombination factor protein RarA [Enterobacter sp. Ag1]
gi|394729380|gb|EJF29376.1| recombination factor protein RarA [Enterobacter sp. Ag1]
Length = 447
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 259/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLADGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVKD+R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKDIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E++L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTVADIELVLDQAMNDKARGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A + + + + E G
Sbjct: 188 QNIILPDETRKAIAELVNGDARRALNTLEMMADMAEIDASGNRILQTQLLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISAVHKSIRGSAPDAALYWYARIISAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP + A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEDYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAQTRY 415
>gi|301632691|ref|XP_002945415.1| PREDICTED: replication-associated recombination protein A-like
[Xenopus (Silurana) tropicalis]
Length = 435
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 256/429 (59%), Gaps = 44/429 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +V+GQ H+L P LR A S R S I WGPPG GKTT+A+ +
Sbjct: 9 HQPLAERLRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMAE 68
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+RDAV+ A + R + +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 69 --AFDAQFISISAVLGGVKDIRDAVQLAERARDGLAPQRTIVFVDEVHRFNKSQQDAFLP 126
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G F+GATTENPSF + + LLSR V L PL A DD+ ++K+
Sbjct: 127 HVESGLFTFVGATTENPSFEVNSALLSRATVYVLQPL-----------AADDLKQIVAKA 175
Query: 300 VGGTRV-EVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+ + ++A+E L + DGDAR LN LE ++TA
Sbjct: 176 QALQALPAIENEALERLVAYADGDARRLLNTLETLSVTAG-------------------- 215
Query: 359 SPYVALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
L TL DA + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+
Sbjct: 216 --QAQLATLTDAWLLQVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLD 273
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GG P Y+ARR+VR A EDVGLADP AL A Q LG PE + LAQ V YLA+A
Sbjct: 274 GGADPRYMARRIVRMAWEDVGLADPRALQIANEAAQTYERLGSPEGELALAQAVIYLAVA 333
Query: 477 PKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SA 533
PKS + Y A A+ +++ VP+HLRNAPT+LMKE+ YGKGY Y D+ +A
Sbjct: 334 PKSNAGYVAYKQARAFVQQD--GTRPVPMHLRNAPTRLMKELDYGKGYRYAHDEEGGFAA 391
Query: 534 KQSFLPPSL 542
+ +LP +
Sbjct: 392 GERYLPEGM 400
>gi|238757607|ref|ZP_04618791.1| Replication-associated recombination protein A [Yersinia aldovae
ATCC 35236]
gi|238704112|gb|EEP96645.1| Replication-associated recombination protein A [Yersinia aldovae
ATCC 35236]
Length = 444
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ ++ +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLDQYIGQQHLLAPGKPLPRAIIAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+ D + G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEKVIDQAMSDSSRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + ++ G V
Sbjct: 185 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DAKG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RILTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YSAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMASTRY 412
>gi|389737339|ref|ZP_10190792.1| recombination factor protein RarA [Rhodanobacter sp. 115]
gi|388436138|gb|EIL93012.1| recombination factor protein RarA [Rhodanobacter sp. 115]
Length = 447
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 264/430 (61%), Gaps = 35/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++++VGQ L+ LR A+ + R+ S++ WGPPG GKTTLA ++ +
Sbjct: 22 PLAERMRPRDLDEIVGQRRLVGEGKPLRRALEAGRVHSMVLWGPPGCGKTTLA--LLMAR 79
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F +SAV SG+ DVR A+ +A + +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 80 YADADFRAISAVMSGLPDVRKALAEA-EANFARGRRTVLFVDEVHRFNKAQQDAFLPHIE 138
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+F+GATTENPSF L + LLSRCRV L L D+ L+RA+DD GL G
Sbjct: 139 KGVILFVGATTENPSFELNSALLSRCRVHVLEALSSGDIIAALRRALDDGERGL----GE 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++++ ++E + DGD R L LEI+A E+ E + DE+
Sbjct: 195 QQLQIDDASLESIAQAADGDVRRGLTLLEIAA----------ELAEDGRIDEA------- 237
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL+ + + +D+ GE+ Y+ ISALHKS+R +D DAA+YWLARML+GG P
Sbjct: 238 ---TLE---QVLADRTRRFDKGGEQFYDQISALHKSVRSSDPDAAVYWLARMLDGGCDPA 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+ R A ED+GLA+P A A+ + LG PE + LAQ +LA+APKS +
Sbjct: 292 YLARRMTRMAVEDIGLAEPRAWRMALDAWDTYERLGSPEGELGLAQLAIWLAVAPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y+A A+ +RES G E VP+HLRNAPTKLMK +GYGK Y Y D Q LP
Sbjct: 352 YKAWNQARAAVRES-GTLE-VPMHLRNAPTKLMKGLGYGKNYQYDHDAEGGVALDQQCLP 409
Query: 540 PSLEGYKFLD 549
+L+G F +
Sbjct: 410 DALDGTVFYE 419
>gi|373954893|ref|ZP_09614853.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM
18603]
gi|373891493|gb|EHQ27390.1| AAA ATPase central domain protein [Mucilaginibacter paludis DSM
18603]
Length = 426
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 201/429 (46%), Positives = 262/429 (61%), Gaps = 38/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP N+++ VGQ HL+ P ++LR A+ S LPS+IFWGPPG GKTTLA I S
Sbjct: 6 PLAERMRPKNLDEYVGQKHLVGPGAVLRKAIESGSLPSMIFWGPPGVGKTTLAYII--SQ 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ F LSA+ SGVKDVR+ +E A L+ + VLF+DE+HRF+KSQQDS L +E
Sbjct: 64 SLDRPFFSLSAINSGVKDVREVIEKASLLKQQDATLPVLFIDEIHRFSKSQQDSLLGAVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLK--RAVDDVNNGLSKSV 300
G + IGATTENPSF +I+ LLSRC+V L PL D+ LL+ + D+V L K
Sbjct: 124 RGIVTLIGATTENPSFEVISALLSRCQVYILKPLSEDDLIHLLQTSQQQDEV---LKKR- 179
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ + E L GDAR LN E+ + DG S
Sbjct: 180 -----NITIEDYEALIRLSGGDARKLLNIFELLI------------------NSLDGES- 215
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T + E Q YD+AGE+HY++ISA KSMRG D + A+YWLARM+ GGE
Sbjct: 216 --ITITNELVLEHVQQNLALYDKAGEQHYDIISAFIKSMRGTDPNGAVYWLARMIVGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL+IARR++ ASED+G A+P AL A SC+ A + +GMPE +IL+Q YLA + KS
Sbjct: 274 PLFIARRMLILASEDIGNANPNALLLAQSCFNAVNVIGMPESQLILSQTAIYLATSAKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S A+GAA ++RE+ + VPLHLRNAPTKLMK IGYGK Y Y + + A Q FL
Sbjct: 334 SATTAIGAAIAMVRET--GDLPVPLHLRNAPTKLMKNIGYGKNYKYAHSFEGNFADQDFL 391
Query: 539 PPSLEGYKF 547
P ++ G K
Sbjct: 392 PEAIRGTKL 400
>gi|418242094|ref|ZP_12868611.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|351778442|gb|EHB20595.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
Length = 447
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPLTLEQYIGQQHLLAPGKPLSRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++++A+ D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIEQAMSDSRRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + +++G V
Sbjct: 188 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 230 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 350 YSAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMASTRY 415
>gi|15602122|ref|NP_245194.1| recombination factor protein RarA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12720486|gb|AAK02341.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 445
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAHQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-AERRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|399009023|ref|ZP_10711469.1| AAA ATPase [Pseudomonas sp. GM17]
gi|398114032|gb|EJM03867.1| AAA ATPase [Pseudomonas sp. GM17]
Length = 441
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 266/430 (61%), Gaps = 38/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRPANLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALHKLVQRALAE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLSDEGFQMLLAAADGDGRRLLNLLENASDLA-----------------EDGTQIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 ELLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKAAMCSAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKF 547
P +LE F
Sbjct: 399 FPEALEPQPF 408
>gi|145632980|ref|ZP_01788713.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
gi|144986636|gb|EDJ93202.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
Length = 446
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ A E+ +G
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELMVDMA--------------EETENGKKIDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 234 TLL-----KEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|58426759|gb|AAW75796.1| ATPase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 517
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 196/427 (45%), Positives = 255/427 (59%), Gaps = 33/427 (7%)
Query: 106 KTRHDVDSTTALHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSII 162
+ R D + LHV + PL+ERMRP ++D+VGQ LL+P+S LR AV S R+ S+I
Sbjct: 63 RKRPDSVTPDLLHVDRSAMGPLAERMRPRTLDDMVGQKRLLAPDSALRRAVESGRVHSMI 122
Query: 163 FWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222
WGPPG GKTTLA + + +F +SAV SG+ +VR + +A + R +RTVLF
Sbjct: 123 LWGPPGCGKTTLALLLAHYA--DAEFNAISAVLSGLPEVRQVLAEAAQ-RFAGGRRTVLF 179
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
VDEVHRFNK+QQD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+
Sbjct: 180 VDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIV 239
Query: 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVP 342
L+RA+ D GL + ++V+ ++ + S DGD R AL LEI+A A
Sbjct: 240 EALQRALHDAERGLGQQT----IQVSEASLLEIASAADGDVRRALTLLEIAAELAT---- 291
Query: 343 VKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGN 402
E +P L L D F D+ GE+ Y+ ISALHKS+R +
Sbjct: 292 ----------GEGGEITPRTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSS 334
Query: 403 DADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462
+ DAA+YWL RML+GG P Y+ARRL R A ED+GLADP A A+ + LG PE
Sbjct: 335 NPDAALYWLTRMLDGGCDPTYLARRLTRMAIEDIGLADPRAQGMALEAWDIYERLGSPEG 394
Query: 463 NVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGK 522
+ AQ V YLA KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+
Sbjct: 395 ELAFAQLVLYLASTAKSNAGYAAFNQARAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQ 452
Query: 523 GYIYTPD 529
Y Y D
Sbjct: 453 DYQYDHD 459
>gi|336409509|ref|ZP_08589991.1| hypothetical protein HMPREF1018_02007 [Bacteroides sp. 2_1_56FAA]
gi|335945890|gb|EGN07696.1| hypothetical protein HMPREF1018_02007 [Bacteroides sp. 2_1_56FAA]
Length = 423
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 198/443 (44%), Positives = 265/443 (59%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V + IE + GDAR LN LE+ VE E E
Sbjct: 169 TDVVLKERKIELKETGAMLRFSGGDARKLLNILELV---------------VESETEE-- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVIITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAEITIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ
Sbjct: 328 KSNSAYNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP ++ K L P+ N ++
Sbjct: 386 QFLPDEIKA-KQLWQPQHNPAEQ 407
>gi|413963317|ref|ZP_11402544.1| recombination factor protein RarA [Burkholderia sp. SJ98]
gi|413929149|gb|EKS68437.1| recombination factor protein RarA [Burkholderia sp. SJ98]
Length = 438
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 197/433 (45%), Positives = 264/433 (60%), Gaps = 41/433 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP I+DV+GQ HLL P+ LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRTIDDVIGQKHLLGPSKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAQFISLSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L +++ LL+RA +K +GG
Sbjct: 127 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLDADELKELLERA--------TKELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A AA +++ DG
Sbjct: 179 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAAA----------QQKQTVVDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG++ DAA+YW RML+GG P
Sbjct: 227 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSNPDAALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YMARRIVRMAWEDIGLADPRGARIALDAAETYERLGSPEGELALAQALIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + + Q+ GVP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFVGKD--QSRGVPVHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLP 394
Query: 540 PSLEGYKFLDWPK 552
EG + W K
Sbjct: 395 ---EGMRDPYWYK 404
>gi|238763313|ref|ZP_04624277.1| Replication-associated recombination protein A [Yersinia
kristensenii ATCC 33638]
gi|238698412|gb|EEP91165.1| Replication-associated recombination protein A [Yersinia
kristensenii ATCC 33638]
Length = 447
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 266/428 (62%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++++A+ D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIEQAMSDSSRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + +++G V
Sbjct: 188 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 230 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 350 YTAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAATRY 415
>gi|386266027|ref|YP_005829519.1| Recombination factor RarA [Haemophilus influenzae R2846]
gi|309973263|gb|ADO96464.1| Recombination factor RarA [Haemophilus influenzae R2846]
Length = 446
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVVRRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|312961667|ref|ZP_07776165.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
gi|311283926|gb|EFQ62509.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
Length = 441
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 264/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLHRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V+ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSVSEEGFKILLTAADGDGRRFLNLLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VP+HLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPMHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|218262943|ref|ZP_03477241.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
DSM 18315]
gi|423341811|ref|ZP_17319526.1| hypothetical protein HMPREF1077_00956 [Parabacteroides johnsonii
CL02T12C29]
gi|218223042|gb|EEC95692.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
DSM 18315]
gi|409219904|gb|EKN12863.1| hypothetical protein HMPREF1077_00956 [Parabacteroides johnsonii
CL02T12C29]
Length = 424
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 197/430 (45%), Positives = 261/430 (60%), Gaps = 49/430 (11%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+PS I WGPPG GKTTLA+ I N +
Sbjct: 5 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPSFILWGPPGVGKTTLAQIISNKL 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA++SGVKDVR+ +E A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 65 EAP--FYTLSAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVE 122
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV------DDVNNGL 296
G + IGATTENPSF +I PLLSRC+V L L+ D+ LL +AV D+N L
Sbjct: 123 TGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEKADLLTLLNKAVTEDIVLKDMNIVL 182
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356
+++ DA + GDAR LN LE+ + AA E+ +E
Sbjct: 183 TET----------DA---MLRYSGGDARKLLNILEL--VVAA-----------EEGNEK- 215
Query: 357 GCSPYVALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414
+ + D K E Q AYD+ GE HY++ISA KS+RG+D DAAIYWLARM
Sbjct: 216 --------IEITDEKVVERLQENPAAYDKGGEMHYDIISAFIKSIRGSDPDAAIYWLARM 267
Query: 415 LEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLA 474
+ GGE P +IARRLV ASED+GLA+P AL A +C+ A +G PE +ILA+ YLA
Sbjct: 268 VAGGEDPEFIARRLVISASEDIGLANPNALLLANACFDALKKIGWPEGRIILAETTVYLA 327
Query: 475 LAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPS 532
+PKS S Y A+ A +++ + N VPLHLRNAPTKLM E+ YGK Y Y D +
Sbjct: 328 CSPKSNSAYMAINDALELVNRT--GNLPVPLHLRNAPTKLMAELNYGKDYKYAHDYENHF 385
Query: 533 AKQSFLPPSL 542
KQ FLP +
Sbjct: 386 VKQEFLPKEI 395
>gi|241663732|ref|YP_002982092.1| recombination factor protein RarA [Ralstonia pickettii 12D]
gi|240865759|gb|ACS63420.1| AAA ATPase central domain protein [Ralstonia pickettii 12D]
Length = 449
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/427 (45%), Positives = 259/427 (60%), Gaps = 38/427 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +DV+GQ HLL P LR A S S+I WGPPG GKTTLA+ + N
Sbjct: 14 HMPLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMAN 73
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A +F+ LSAV SGVKD+R+AVE A + R + +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 74 --AFDAEFIALSAVLSGVKDIREAVERAEQFRA-NGRRTLVFVDEVHRFNKSQQDAFLPH 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G FIGATTENPSF + LLSR V L L +++ L +RA + +
Sbjct: 131 VESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERA--------RQEL 182
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG +E A++ + ++ DGD R LN +EI +T A R + E D
Sbjct: 183 GG--LEWTPAALDAIVASADGDGRKLLNNVEI--VTRAAR----------SQAEGD---- 224
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+ +D+A A +D+ G+ Y+ ISALHKS+RG+D D A+YW RML+GG
Sbjct: 225 --TVPVIDEALLASALSENLRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGG 282
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARR+VR A ED+GLADP A + + LG PE + LAQ V YLA+APK
Sbjct: 283 ADPRYLARRIVRMAWEDIGLADPRAGRITLDAAETYERLGSPEGELALAQAVIYLAIAPK 342
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S + Y A AA+ + + +N VP+HLRNAPTKLMKE+GYG Y Y D+P +A +
Sbjct: 343 SNAGYNAYNAARAFVSQDKSRN--VPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGE 400
Query: 536 SFLPPSL 542
++ P L
Sbjct: 401 TYFPDDL 407
>gi|374702410|ref|ZP_09709280.1| recombination factor protein RarA [Pseudomonas sp. S9]
Length = 441
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 265/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R +++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATTLDEYVGQEHLLARGKPLREALEQGTLHSMIFWGPPGVGKTTLAR-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R AVE A++ + ++T+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQAVEVAQQHAAQYGRQTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ D K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVDRALHD-----PKGLGD 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + ++ L + DGD R LN LE +A A D+ + +
Sbjct: 185 RQLSLPEESFAILMAAADGDGRRLLNFLENAADLA---------------DDGGEITAEL 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L D++ F D+ GE Y+ ISALHKS+RG+ D A+YW ARM++GG PL
Sbjct: 230 LRDLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSSPDGALYWYARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASED+G ADP AL+ +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEDIGNADPRALSLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + E+ G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YSAFKAAMRDVAEN-GSME-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE ++
Sbjct: 401 EQLEPRQY 408
>gi|357043709|ref|ZP_09105398.1| hypothetical protein HMPREF9138_01870 [Prevotella histicola F0411]
gi|355368146|gb|EHG15569.1| hypothetical protein HMPREF9138_01870 [Prevotella histicola F0411]
Length = 412
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 193/438 (44%), Positives = 266/438 (60%), Gaps = 34/438 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ +GQ HL+ ++LR + S + S I WGPPG GKTTLA+ I + +
Sbjct: 3 PLAERMRPHTLDEYIGQQHLIGEGAVLRRMIDSGHISSFILWGPPGVGKTTLAQIIAHRL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E A+ R ++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIERAQSGRFFNSVSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL RA+ ++ V
Sbjct: 121 KGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLKLLHRAI-------TEDVEL 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ L GDAR LN L++ V + K VE DE
Sbjct: 174 QKRDIRLTETAALLRYSGGDARKLLNILDLI-------VSAEAGKTVEITDEI------- 219
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+E Q LAYD+ GE HY+++SA KS+RG D DAA+YW+ARM+EGGE P
Sbjct: 220 -------VEERLQQNPLAYDKGGEMHYDIVSAFIKSIRGGDPDAALYWMARMIEGGEDPQ 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V ASED+GLA+P AL A + + A +G PE + LA+ V YLA++PKS S
Sbjct: 273 FIARRVVISASEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEAVVYLAMSPKSTSS 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
YR + AA +++S N VPLHLRNAPTKLM+++GYGK Y Y PD P KQ ++P
Sbjct: 333 YRGINAALAEVQKS--GNLPVPLHLRNAPTKLMRDLGYGKEYKYPPDYPGHYVKQQYMPD 390
Query: 541 SLEGYKFLDWPKSNTTDK 558
L F + +++ ++
Sbjct: 391 GLTDVSFWERQENDKVNR 408
>gi|254504344|ref|ZP_05116495.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11]
gi|222440415|gb|EEE47094.1| ATPase, AAA family protein [Labrenzia alexandrii DFL-11]
Length = 434
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 249/422 (59%), Gaps = 38/422 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++RMRP + DVVGQDHLL P L + + L S+IFWGPPGTGKTT+A+ + N
Sbjct: 17 PLADRMRPARLEDVVGQDHLLGPEGTLSRMLKTRTLGSLIFWGPPGTGKTTIARLLANET 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ F +SA+ SGV D++ E AR R+ + T+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 77 DLA--FEQISAIFSGVADLKKVFEAARARRM-GGRATLLFVDEIHRFNRAQQDSFLPVME 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I +GATTENPSF L LLSR V+T L +E LL RA + V
Sbjct: 134 DGTITLVGATTENPSFELNAALLSRSHVMTFQSLNKGAIEQLLARA---------EEVEE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ +A L DGD R AL E +V EDE
Sbjct: 185 RKLPLDEEARGVLIRMADGDGRSALTLAE-------------DVWRASAEDE-------- 223
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ + +E Q + YD+ + HYNLISALHKS+RG+D DA++YW RML+GGE P+
Sbjct: 224 -VFDAERLQEIVQRRAPIYDKGADGHYNLISALHKSVRGSDPDASLYWFCRMLDGGEDPM 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+R A ED+GLADP AL QA + A LG PE + LAQCV YLA APKS
Sbjct: 283 YLARRLIRMAVEDIGLADPNALVQANAARDAYQMLGSPEGELALAQCVIYLATAPKSNGA 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A AA + + S + P H+ NAPTKLMK+ GYG GY Y D P + Q + P
Sbjct: 343 YVAYKAAMRDAKTS--GSLLPPKHILNAPTKLMKQEGYGDGYHYDHDSPDGFSGQDYFPE 400
Query: 541 SL 542
+
Sbjct: 401 DM 402
>gi|229847091|ref|ZP_04467196.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
gi|229809920|gb|EEP45641.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
Length = 446
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DGS++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGSVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V E+E + D
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------VDMADEMENGKKIDR----- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 234 ---TL--LKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|146341536|ref|YP_001206584.1| recombination factor protein RarA [Bradyrhizobium sp. ORS 278]
gi|146194342|emb|CAL78366.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. ORS 278]
Length = 444
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 261/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL ER+RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 26 PLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD-- 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SAV SGV D++ V DA + R ++ + T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 84 ATELHFEQISAVFSGVADLKK-VFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVME 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL + L +E L A + V G
Sbjct: 143 DGTVVLVGATTENPSFELNAALLSRSRVLIFHSLDAAAIEELYSHA---------EEVEG 193
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ DA L DGD R +L E EV ++ E
Sbjct: 194 RKLPLDEDARHVLIRMADGDGRASLTLAE-------------EVWRSARKGE------IF 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V L D Q + YD++ + HYNLISA+HKS+RG+D DAA+Y+ ARML+ GE PL
Sbjct: 235 NAVQLQDV---LQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS +
Sbjct: 292 FLARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+A GAA++V +E G + P H+ NAPTKLM+ GYG GY Y D P A Q + P
Sbjct: 352 YKAFGAAKRVAKE--GGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAFSGQDYFPE 409
Query: 541 SLEGYKFLDWPK 552
+L F D P+
Sbjct: 410 ALGRQHFYDPPE 421
>gi|408481309|ref|ZP_11187528.1| recombination factor protein RarA [Pseudomonas sp. R81]
Length = 440
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/426 (44%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL+RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLQRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V+ + + L + DGD R LN +E ++ A DG V
Sbjct: 185 RQLRVSEEGFKILLTAADGDGRRFLNLVENASDLA-----------------EDGSEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VP+HLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAE-YGSLE-VPMHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDDLE 404
>gi|386307845|ref|YP_006003901.1| AAA ATPase [Yersinia enterocolitica subsp. palearctica Y11]
gi|433548201|ref|ZP_20504251.1| FIG065221: Holliday junction DNA helicase [Yersinia enterocolitica
IP 10393]
gi|318606281|emb|CBY27779.1| ATPase, AAA family [Yersinia enterocolitica subsp. palearctica Y11]
gi|431790761|emb|CCO67291.1| FIG065221: Holliday junction DNA helicase [Yersinia enterocolitica
IP 10393]
Length = 444
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLEQYIGQQHLLAPGKPLSRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++++A+ D G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIEQAMSDSRRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + +++G V
Sbjct: 185 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YSAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMASTRY 412
>gi|28870511|ref|NP_793130.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28853759|gb|AAO56825.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
Length = 440
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----DRGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG +
Sbjct: 185 RKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|404398656|ref|ZP_10990240.1| recombination factor protein RarA [Pseudomonas fuscovaginae
UPB0736]
Length = 441
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 265/430 (61%), Gaps = 38/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AV+ A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SEAH-FETVSAVLAGVKEIRQAVDVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVQRALSE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLGDEGFQMLLAAADGDGRRLLNLLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMGFKAAMASAAEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKF 547
P LE F
Sbjct: 399 FPEQLEPQAF 408
>gi|289207843|ref|YP_003459909.1| ATPase AAA [Thioalkalivibrio sp. K90mix]
gi|288943474|gb|ADC71173.1| AAA ATPase central domain protein [Thioalkalivibrio sp. K90mix]
Length = 454
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/439 (44%), Positives = 262/439 (59%), Gaps = 35/439 (7%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P+APL+ERMRP ++++VGQDHL+ P++ LR A+ + PS+I WGPPG GKTTLA+ +
Sbjct: 31 PNAPLAERMRPARLDEMVGQDHLVGPDAALRQAIEQGQTPSMILWGPPGCGKTTLARLV- 89
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ A + + V LSAV +GVKDVR AV DA K R ++ T+LF+DE+HRFNK QQD+ LP
Sbjct: 90 -AAAGAQRLVTLSAVLAGVKDVR-AVVDAAKARRRNGVGTLLFIDEIHRFNKGQQDALLP 147
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
IEDG++ F+GATTENPSF L + LLSR RV + + +E L+ RA+ D GL
Sbjct: 148 HIEDGTLTFVGATTENPSFALNSALLSRARVYRMESVGAEAIEALIDRALSDPERGLGGR 207
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ + + + DGDAR ALN LE ++ A DG
Sbjct: 208 G----LRLEPTERQRVARAADGDARRALNWLETASDLA-----------------RDGE- 245
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+T D + + LA+DR G+ Y+ ISALHKS+RG+D AA+YWL RML+ G
Sbjct: 246 -----ITADALRAVMGAQSLAFDRQGDAFYDQISALHKSVRGSDPGAAVYWLTRMLDAGC 300
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ RRL+R A ED+GLA + ++ +Q LG PE ++ L Q LA APKS
Sbjct: 301 DPDYLGRRLLRMAYEDIGLAAVGLGARVLAAWQTMERLGRPEGDLALIQAAIELAAAPKS 360
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQS 536
S Y AL + IRE+ + GVPLHLRNAPT+LM+E G+G GY Y D+P Q
Sbjct: 361 NSAYTALNEVRASIRET--GSPGVPLHLRNAPTELMREEGFGAGYRYDHDEPDGFARGQV 418
Query: 537 FLPPSLEGYKFLDWPKSNT 555
+LP LE +F + T
Sbjct: 419 YLPEGLEDQRFYRAKREGT 437
>gi|145631003|ref|ZP_01786779.1| predicted ATPase [Haemophilus influenzae R3021]
gi|144983470|gb|EDJ90946.1| predicted ATPase [Haemophilus influenzae R3021]
Length = 453
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS---AKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P+ A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYVAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELQDTQY 414
>gi|387894351|ref|YP_006324648.1| recombination factor protein RarA [Pseudomonas fluorescens A506]
gi|387162278|gb|AFJ57477.1| recombination factor protein RarA [Pseudomonas fluorescens A506]
Length = 441
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMQKLLHRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLSDEGFKILLTAADGDGRRFLNLLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|425062944|ref|ZP_18466069.1| Holliday junction DNA helicase [Pasteurella multocida subsp.
gallicida X73]
gi|404383650|gb|EJZ80101.1| Holliday junction DNA helicase [Pasteurella multocida subsp.
gallicida X73]
Length = 445
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKEA--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|260582200|ref|ZP_05849994.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
gi|260094832|gb|EEW78726.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
Length = 446
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++A++D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAIEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ A E+ +G
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELMVDMA--------------EETENGKKIDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 234 TLL-----KEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|213970053|ref|ZP_03398185.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
gi|301381409|ref|ZP_07229827.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
Max13]
gi|302058407|ref|ZP_07249948.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
K40]
gi|302130344|ref|ZP_07256334.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213925157|gb|EEB58720.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
Length = 440
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----DRGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG +
Sbjct: 185 RKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|329123991|ref|ZP_08252538.1| replication-associated recombination protein A [Haemophilus
aegyptius ATCC 11116]
gi|327467416|gb|EGF12914.1| replication-associated recombination protein A [Haemophilus
aegyptius ATCC 11116]
Length = 446
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 265/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIERAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVVRRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
L+ ++
Sbjct: 407 LELKDTQY 414
>gi|255692090|ref|ZP_05415765.1| replication-associated recombination protein A [Bacteroides
finegoldii DSM 17565]
gi|423299644|ref|ZP_17277669.1| hypothetical protein HMPREF1057_00810 [Bacteroides finegoldii
CL09T03C10]
gi|260622242|gb|EEX45113.1| ATPase, AAA family [Bacteroides finegoldii DSM 17565]
gi|408473453|gb|EKJ91975.1| hypothetical protein HMPREF1057_00810 [Bacteroides finegoldii
CL09T03C10]
Length = 425
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 268/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FFTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ +
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAITT-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V E E ED
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILEL-------------VVESEAED--------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + KQ FLP
Sbjct: 333 YNAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WKPQNNPAEQ 407
>gi|423094625|ref|ZP_17082421.1| recombination factor protein RarA [Pseudomonas fluorescens Q2-87]
gi|397887583|gb|EJL04066.1| recombination factor protein RarA [Pseudomonas fluorescens Q2-87]
Length = 441
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 265/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L S DGD R LN LE ++ ++D G
Sbjct: 185 RQLSLSDEGFQILFSAADGDGRRLLNLLE-------------NASDLAEDDSEIGVELLQ 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+L L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG PL
Sbjct: 232 SL--LGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE +F
Sbjct: 401 DELEPQRF 408
>gi|325954336|ref|YP_004237996.1| ATPase AAA [Weeksella virosa DSM 16922]
gi|323436954|gb|ADX67418.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922]
Length = 424
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 268/440 (60%), Gaps = 35/440 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++ + Q HLL N+ +R + + + S+IFWGPPGTGKTTLA+ I
Sbjct: 3 APLAERMRPKSLDQYINQKHLLGENAPIRMMLQHDMIASMIFWGPPGTGKTTLAQLIAE- 61
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV-KSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA+ +GVKDVR+ ++ A+ + + K +LF+DE+HRFNKSQQDS L
Sbjct: 62 -LSNRPFYTLSAINAGVKDVREVIDKAKSQNLFTTEKNPILFIDEIHRFNKSQQDSLLSA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF ++ LLSR +V TL+ L D+E LL RA+ + +N LS
Sbjct: 121 VEKGYITLIGATTENPSFEVVPALLSRAQVYTLHALVKEDLEDLLFRAIQE-DNLLSTK- 178
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++ D + L GDAR LNA E+ V E E+
Sbjct: 179 -----KIRLDETDALIRFSGGDARKLLNAFELV---------VNSFGENEE--------- 215
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T + ++ Q YD+ GE+HY+++SA KS+RG+D A +YWLARM+EGGE
Sbjct: 216 --IIITNETVQQRIQQNTARYDKTGEQHYDIVSAFIKSIRGSDPQATVYWLARMIEGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARR++ ASED+G A+P AL A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 274 VKFIARRMLIAASEDIGAANPTALILANNTFQAVSVIGYPESRIILSQCAIYLANSPKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFL 538
S Y A+ AQ++++E+ + VPLHLRNAPTKLMK++ YGK Y+Y D+ Q FL
Sbjct: 334 STYMAINRAQQLVKET--GDLSVPLHLRNAPTKLMKDMDYGKNYLYAHDYDENFVCQEFL 391
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L G F + P +N ++
Sbjct: 392 PEELTGTSFYE-PGNNKREQ 410
>gi|384419358|ref|YP_005628718.1| ATPase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462271|gb|AEQ96550.1| ATPase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 458
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 254/427 (59%), Gaps = 33/427 (7%)
Query: 106 KTRHDVDSTTALHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSII 162
+ R D + LHV + PL+ERMRP ++D+VGQ LL+P+S LR A S R+ S+I
Sbjct: 4 RKRPDSVTPDLLHVDRSAMGPLAERMRPRTLDDMVGQKRLLAPDSALRRAFESGRVHSMI 63
Query: 163 FWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222
WGPPG GKTTLA + + +K +SAV SG+ +VR + +A + R +RTVLF
Sbjct: 64 LWGPPGCGKTTLALLLAHYADAEFK--AISAVLSGLPEVRQVLAEADQ-RFADGRRTVLF 120
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282
VDEVHRFNK+QQD+FLP IE G+I+F+GATTENPSF L + LLSRCRV L + P D+
Sbjct: 121 VDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIV 180
Query: 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVP 342
L+RA+ D GL + ++V+ ++ + S DGD R AL LEI+A A
Sbjct: 181 EALQRALHDAERGLGQQT----IQVSEASLLEIASAADGDVRRALTLLEIAAELAT---- 232
Query: 343 VKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGN 402
E +P L L D F D+ GE+ Y+ ISALHKS+R +
Sbjct: 233 ----------GEGGEITPRTLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSS 275
Query: 403 DADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462
+ DAA+YWL RML+GG P Y+ARRL R A ED+GLADP A A+ + LG PE
Sbjct: 276 NPDAALYWLTRMLDGGCDPTYLARRLTRMAIEDIGLADPRAQGMALEAWDIYERLGSPEG 335
Query: 463 NVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGK 522
+ AQ V YLA KS + Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+
Sbjct: 336 ELAFAQLVLYLASTAKSNAGYAAFNQARAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQ 393
Query: 523 GYIYTPD 529
Y Y D
Sbjct: 394 DYQYDHD 400
>gi|417852726|ref|ZP_12498227.1| recombination factor protein RarA [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338216361|gb|EGP02481.1| recombination factor protein RarA [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 445
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGEHAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|422681404|ref|ZP_16739673.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331010747|gb|EGH90803.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 440
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 264/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLTLSDEGFTILMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG+D DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSDPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---F 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGGDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|265763268|ref|ZP_06091836.1| recombination factor protein RarA [Bacteroides sp. 2_1_16]
gi|263255876|gb|EEZ27222.1| recombination factor protein RarA [Bacteroides sp. 2_1_16]
Length = 423
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 197/443 (44%), Positives = 265/443 (59%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T + + IE + GDAR LN LE+ VE E E
Sbjct: 169 TDIVLKERKIELKETGAMLRFSGGDARKLLNILELV---------------VESETEE-- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVIITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ
Sbjct: 328 KSNSAYNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP ++ K L P+ N ++
Sbjct: 386 QFLPDEIKA-KQLWQPQHNPAEQ 407
>gi|289666013|ref|ZP_06487594.1| recombination factor protein RarA [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 436
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/408 (46%), Positives = 248/408 (60%), Gaps = 30/408 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTTLA + +
Sbjct: 2 GPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHY 61
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+K +SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK+QQD+FLP I
Sbjct: 62 ADAEFK--AISAVLSGLPEVRQVLAEAAQ-RFAGGRRTVLFVDEVHRFNKAQQDAFLPHI 118
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D GL +
Sbjct: 119 ERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALHDAERGLGQQT- 177
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++V+ A+ + S DGD R AL LEI+A A E +P
Sbjct: 178 ---IQVSEAALLEIASAADGDVRRALTLLEIAAELAM--------------GEGGEITPR 220
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P
Sbjct: 221 TLLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDP 273
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YLA KS +
Sbjct: 274 AYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNA 333
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 334 GYAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQDYQYDHD 379
>gi|365891878|ref|ZP_09430240.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. STM 3809]
gi|365332125|emb|CCE02771.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Bradyrhizobium sp. STM 3809]
Length = 444
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 262/432 (60%), Gaps = 38/432 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL ER+RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + +
Sbjct: 26 PLPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD-- 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F +SAV SGV D++ V DA + R ++ + T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 84 ATELHFEQISAVFSGVADLKK-VFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVME 142
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL + L +E L A ++V G
Sbjct: 143 DGTVVLVGATTENPSFELNAALLSRSRVLVFHSLDAAAIEKLYSHA---------EAVEG 193
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ +A L DGD R +L E EV ++ E
Sbjct: 194 RKLPLDEEARNVLIRMADGDGRASLTLAE-------------EVWRSARKGE-------- 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E Q + YD++ + HYNLISA+HKS+RG+D DAA+Y+ ARML+ GE PL
Sbjct: 233 -IFNAVQLQEILQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPL 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS +
Sbjct: 292 FLARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAA 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y+A GAA++V +E G + P H+ NAPTKLM+ GYG GY Y D P A Q + P
Sbjct: 352 YKAFGAAKRVAKE--GGSLLPPKHILNAPTKLMQSEGYGSGYQYDHDAPDAFSGQDYFPE 409
Query: 541 SLEGYKFLDWPK 552
+L F D P+
Sbjct: 410 ALGRQHFYDPPE 421
>gi|315042992|ref|XP_003170872.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
gi|311344661|gb|EFR03864.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
Length = 552
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 200/499 (40%), Positives = 284/499 (56%), Gaps = 41/499 (8%)
Query: 56 PNPNPNQNPVQPKLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHD---VD 112
PN + P +P + Q +PS+ +A + + P PL H V
Sbjct: 76 PNGAAHAQPSKPGSGKRLFSQEEPSTPTPSASTLRAA---VSPLPLHDNNNNEHSAKRVK 132
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
+ AL APL+ERMRP +++V GQ+ L+ N +LR + +R+PS+I WG GTGKT
Sbjct: 133 PSNALQ-KSAPLAERMRPRTLDEVCGQE-LVGENGVLRGLIERDRVPSMILWGSAGTGKT 190
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
T+A+ I + V +FV +++ +SGV + + +A+ + ++T++F DE+HRF+KS
Sbjct: 191 TVARVIAS--MVGSRFVEINSTSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIHRFSKS 248
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQD FL +E G + IGATTENPSF + LLSRCR TL L ++ +L RA+
Sbjct: 249 QQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTEENICAILNRALRVE 308
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
S S V+ + I++L + DGDAR ALN LE++ ++ Q
Sbjct: 309 GPNYSPSA-----LVDDELIKYLAAFADGDARTALNLLELAM-------------DLSQR 350
Query: 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
+ +T D+ K++ + L YDRAG++HY+ ISA HKS+RG+D DA++Y+LA
Sbjct: 351 EG----------MTKDELKKSL-TRTLVYDRAGDQHYDTISAFHKSIRGSDPDASLYYLA 399
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RM++ GE PLYIARRL+ ASEDVGLAD ++ A + Y A +G+PE + LA
Sbjct: 400 RMIQSGEDPLYIARRLIVVASEDVGLADNTMISLATAAYTAVEKIGLPEARINLAHATVA 459
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--D 530
LALAPKS YR L A + E +P+HLRNAPT+LMKEIGYGK Y Y PD D
Sbjct: 460 LALAPKSTRTYRGLANAMASLEEPGIAGLPIPIHLRNAPTRLMKEIGYGKEYKYNPDYKD 519
Query: 531 PSAKQSFLPPSLEGYKFLD 549
Q +LP L G FL+
Sbjct: 520 GKVVQDYLPDKLIGRTFLE 538
>gi|229591234|ref|YP_002873353.1| recombination factor protein RarA [Pseudomonas fluorescens SBW25]
gi|229363100|emb|CAY50103.1| conserevd hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 440
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++ LL RA+++ K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEVAMQKLLHRALNE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ V+ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSVSEEGFKILLTAADGDGRRFLNLLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VP+HLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPMHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|60681434|ref|YP_211578.1| recombination factor protein RarA [Bacteroides fragilis NCTC 9343]
gi|60492868|emb|CAH07643.1| putative AAA family ATPase protein [Bacteroides fragilis NCTC 9343]
Length = 423
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 198/443 (44%), Positives = 265/443 (59%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V + IE + GDAR LN LE+ VE E E
Sbjct: 169 TDVVLKERKIELKETGAMLRFSGGDARKLLNILELV---------------VESETEE-- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVIITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ
Sbjct: 328 KSNSAYNAVNDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP ++ K L P+ N ++
Sbjct: 386 QFLPDEIKA-KQLWQPQHNPAEQ 407
>gi|422299138|ref|ZP_16386713.1| ATPase AAA [Pseudomonas avellanae BPIC 631]
gi|407989037|gb|EKG31437.1| ATPase AAA [Pseudomonas avellanae BPIC 631]
Length = 440
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 265/426 (62%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----DRGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG +
Sbjct: 185 RKLTLSDEGFTMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A AA + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + +
Sbjct: 341 AVYMAFKAAMREAGEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|169334179|ref|ZP_02861372.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
17244]
gi|169258896|gb|EDS72862.1| recombination factor protein RarA [Anaerofustis stercorihominis DSM
17244]
Length = 482
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 187/435 (42%), Positives = 268/435 (61%), Gaps = 29/435 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP N+++ GQ+H++ LL + ++R+ SII +GP G GKTTLA+ I N
Sbjct: 60 APLAVRMRPENLDEFFGQEHIVGEGKLLNRMIEADRISSIILFGPAGCGKTTLARIIANK 119
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ SY F L+AVT GVKDVR+ +E+A+ K+++LF+DE+HRFNKSQQD+ LP +
Sbjct: 120 TS-SY-FYSLNAVTCGVKDVREIIENAKANLGMERKKSILFIDEIHRFNKSQQDALLPSV 177
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I+ IGATTENP F + +PL+SR + L ++ DV +++ + + GL G
Sbjct: 178 EDGTIILIGATTENPFFEINSPLISRSTLFKLKKIEKEDVRKIIENTLKNKERGL----G 233
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++++ +AI++L GDARV+LNALE++ +T +DE+
Sbjct: 234 NYDIQIDEEAIDYLSLMSSGDARVSLNALELAYLTTP-------------KDENG----- 275
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V + D E Q K + YD+ EHY+ ISA KSMRG+D DAA+Y+LA+ML GE P
Sbjct: 276 VIKLNKDIIAECMQKKKVTYDKGDNEHYDTISAFIKSMRGSDPDAAVYYLAKMLYAGEDP 335
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ FASED+G A+ AL+ AVS ++A +GMPE + LA CV YLA +PKS +
Sbjct: 336 KFIARRMIIFASEDIGNANIKALDLAVSTFKAVEVIGMPEVRINLAHCVTYLASSPKSNA 395
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
Y A+ A I N VPLH+RNA K K+ G G GY Y D + KQ +LP
Sbjct: 396 SYMAINKAMSDIENE--PNYEVPLHIRNANYKGEKDFGIGVGYKYPHDFENDYVKQDYLP 453
Query: 540 PSLEGYKFLDWPKSN 554
++G + + PK N
Sbjct: 454 DEIKGRVYYE-PKEN 467
>gi|410075549|ref|XP_003955357.1| hypothetical protein KAFR_0A07880 [Kazachstania africana CBS 2517]
gi|372461939|emb|CCF56222.1| hypothetical protein KAFR_0A07880 [Kazachstania africana CBS 2517]
Length = 561
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/474 (39%), Positives = 278/474 (58%), Gaps = 42/474 (8%)
Query: 94 REIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPN-SLLRSA 152
++I+P P +R + + + H PLSE++RP + + VGQ H+LS + +L
Sbjct: 95 KKIKPDPKIER-----ENEIKYLQKIIHLPLSEKLRPKELKEYVGQQHILSQSKGILYKY 149
Query: 153 VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR 212
+ N +PS+I WGPPG GKT+LA+ + S Y + SA + +++R + A+K
Sbjct: 150 IEQNVIPSMILWGPPGVGKTSLARLLTKSATNKYYMIETSATKANTQELRSIFDRAKKEF 209
Query: 213 VKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLT 272
+ +R +LF+DE+HRFNKSQQD LP +E+G I+ IGATTENPSF L L+SRC V
Sbjct: 210 QLTKRRVILFIDEIHRFNKSQQDLLLPHVENGDIILIGATTENPSFSLNNALISRCHVFV 269
Query: 273 LNPLKPHDVEILLKRAVDDVNNGLSKSVGGTR-VEVNHDAIEFLCSNCDGDARVALNALE 331
L L +++ I+L R +N + +G + ++++ +E++ GD R ALN LE
Sbjct: 270 LETLSVNELCIVLSRGTALLNKCRNLILGVKQPLKLSRACLEYIVDVSIGDTRRALNLLE 329
Query: 332 ISAITAAVR-----VPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGE 386
+ I+ + + V+ V+++ + + S+G S Y YD G+
Sbjct: 330 MIEISTRQKGENEEIDVEMVRDIVKSNSSNGLSTY-------------------YDPKGD 370
Query: 387 EHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQ 446
HY+ ISA HK++RG+D +A++Y+LARML+GGE PLYIARR++R ASED+GL D L
Sbjct: 371 NHYDTISAFHKAVRGSDENASLYYLARMLKGGEDPLYIARRMIRIASEDIGLRDNTLLPL 430
Query: 447 AVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQ--NEGVP 504
A++ + A +G+PE N+ LAQC LA APKS+ IYRA ++ E+V + +P
Sbjct: 431 AIAAHNAVMKIGLPEANLALAQCCVALARAPKSVEIYRAWNKVSSMLNENVFSMASSEIP 490
Query: 505 LHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSL-------EGYKFLD 549
+H+RNAPTKLM+E+GY KGY Y PD D KQ + P + KFLD
Sbjct: 491 MHIRNAPTKLMEELGYHKGYKYNPDYLDGKVKQEYFPQEVLDKCTDKNALKFLD 544
>gi|327295304|ref|XP_003232347.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
gi|326465519|gb|EGD90972.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
Length = 550
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 196/460 (42%), Positives = 272/460 (59%), Gaps = 41/460 (8%)
Query: 96 IEPSPLFK----RLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRS 151
+ P+PL + L R V S+ AL APL+ERMRP ++++ GQ+ L+ N +LR
Sbjct: 112 VSPAPLHESGNDHLAKR--VKSSNALQ-KSAPLAERMRPRTLDEMCGQE-LVGENGVLRG 167
Query: 152 AVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKL 211
+ +R+PS+I WG GTGKTTLA+ I + V +FV +++ +SGV + + +A+
Sbjct: 168 LIERDRVPSMILWGSAGTGKTTLARVIAS--MVGSRFVEINSTSSGVAECKKLFAEAKNE 225
Query: 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVL 271
+ ++T++F DE+HRF+KSQQD FL +E G + IGATTENPSF + LLSRCR
Sbjct: 226 LSLTGRKTIIFCDEIHRFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTF 285
Query: 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
TL L ++ +L RA+ S S V+ + I +L + DGDAR ALN LE
Sbjct: 286 TLAKLTEENICAILNRALRVEGPNYSPSA-----LVDDELIRYLAAFADGDARTALNLLE 340
Query: 332 ISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNL 391
++ ++ Q + +T D+ K++ + L YDRAG++HY+
Sbjct: 341 LAM-------------DLSQREN----------MTKDELKKSL-TRTLVYDRAGDQHYDT 376
Query: 392 ISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCY 451
ISA HKS+RG+D DA++Y+LARM++ GE PLYIARRL+ ASEDVGLAD L+ A + Y
Sbjct: 377 ISAFHKSIRGSDPDASLYYLARMIQSGEDPLYIARRLIVVASEDVGLADNTMLSLATAAY 436
Query: 452 QACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAP 511
A +G+PE + LA LALAPKS YR L A + E +P+HLRNAP
Sbjct: 437 TAVEKIGLPEARINLAHATVALALAPKSTRAYRGLANAMASLEEPGIAGLPIPIHLRNAP 496
Query: 512 TKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
T+LMKEIGYGK Y Y PD D Q +LP L G FLD
Sbjct: 497 TRLMKEIGYGKEYKYNPDYEDGKVVQDYLPDKLIGRTFLD 536
>gi|421262972|ref|ZP_15714057.1| recombination factor protein RarA [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401690385|gb|EJS85666.1| recombination factor protein RarA [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 445
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +EFL +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLEFLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGEAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HL NAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLCNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|358379425|gb|EHK17105.1| hypothetical protein TRIVIDRAFT_57138 [Trichoderma virens Gv29-8]
Length = 530
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 260/430 (60%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQ+ L+ P+ +LRS + SNR+PS+I WG GTGKTT+A+ I +
Sbjct: 107 APLAERMRPKTLDDVCGQE-LVGPDGVLRSLIESNRVPSMILWGASGTGKTTIARCIAH- 164
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A +SGV++ + ++A + ++T++F DE+HRFNK+QQD FL +
Sbjct: 165 -MVGSRFIELNATSSGVQECKKLFQEAANELQLTGRKTIIFCDEIHRFNKAQQDVFLRPV 223
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCR TL L DV +L+RA +SV
Sbjct: 224 EAGTITLIGATTENPSFKVANALLSRCRTFTLRSLTTEDVVAILRRA-----RQAEESVY 278
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + + +L DGDAR ALN LE++ K+V
Sbjct: 279 PPSPLIDDEMMGYLARFSDGDARTALNLLELALSLTLREGMTKDV--------------- 323
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
K++ K L YDRAG++HY+ ISA HKS+RGND DAA+Y+LARML+ GE P
Sbjct: 324 --------MKQSL-TKTLVYDRAGDQHYDTISAFHKSVRGNDPDAALYYLARMLQSGEDP 374
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A S Y A +G+PE + LA C L LAPKS
Sbjct: 375 LFIARRMVVIASEDVGLADNTLLTLATSTYTATQQIGLPEARIPLAHCAVALCLAPKSTR 434
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR L A +RE + VPLHLRNAPT+LM+++G G Y Y P+ D KQ +LP
Sbjct: 435 AYRGLNNAFAALREPGVASLPVPLHLRNAPTRLMRDLGCGAEYKYPPNYKDGKVKQKYLP 494
Query: 540 PSLEGYKFLD 549
L G KFL+
Sbjct: 495 EELTGRKFLE 504
>gi|344200734|ref|YP_004785060.1| AAA ATPase central domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343776178|gb|AEM48734.1| AAA ATPase central domain protein [Acidithiobacillus ferrivorans
SS3]
Length = 443
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 252/428 (58%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP ++ VGQ+HLL LR+ V + L S+I WGPPG+GKTTLA+ + +
Sbjct: 11 PLAARMRPQTLDAYVGQNHLLGKGGPLRAMVATGHLHSMILWGPPGSGKTTLAQLLAH-- 68
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A F LSAV SGV+++R AV A + + TVLF+DE+HRFNKSQQD+ LP +E
Sbjct: 69 AAGQHFQILSAVNSGVREIRAAVTSAEAAQ-SLGQGTVLFIDEIHRFNKSQQDALLPHVE 127
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG + IGATTENPSF L+ LLSR RV L L + +L A+ D GL G
Sbjct: 128 DGVVTLIGATTENPSFALVNALLSRARVYVLKALTGEALGTVLDHALADSVLGL----GN 183
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E++ + L + DGDAR LN L+++ A+V+ ++
Sbjct: 184 LAIEMSPEVRNGLLTAADGDARRLLNLLDLAVQLASVQAGKTQI---------------- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
T D A +D+ GE Y+ ISA HKS+RG+D DAA+YWLARML+GG PL
Sbjct: 228 ---TADIVAAASGQSWRRFDKGGEAFYDEISAFHKSLRGSDPDAALYWLARMLDGGADPL 284
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRLVR ASED+GLADP A++ A++ A FLG PE + LAQ YLA PKS I
Sbjct: 285 YLARRLVRMASEDIGLADPRAIDMALAAKDAYAFLGSPEGELALAQATVYLASCPKSNRI 344
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSFLP 539
Y A A + ++ G + VPLHLRNAPT L+K + YGK Y Y D P A +Q +LP
Sbjct: 345 YDAWNAVRAAVK--AGGSAEVPLHLRNAPTTLLKTLDYGKEYQYDHDYPDAIAPEQHYLP 402
Query: 540 PSLEGYKF 547
P L F
Sbjct: 403 PGLRQTHF 410
>gi|333998040|ref|YP_004530652.1| AAA family ATPase [Treponema primitia ZAS-2]
gi|333739553|gb|AEF85043.1| ATPase, AAA family [Treponema primitia ZAS-2]
Length = 774
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 267/431 (61%), Gaps = 28/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+PL++RMRP ++DVVGQDH++ P LLR A+ ++RL S+IF+GPPGTGKT+LA+ I N
Sbjct: 15 QSPLADRMRPRILDDVVGQDHIVGPGRLLRRAIQADRLSSVIFYGPPGTGKTSLARVIAN 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ +++ L+AV +G+KD+R+A++ + + R KRT+LFVDEVHR+NK+QQD+ LP
Sbjct: 75 TTRSTFE--SLNAVLAGIKDIREAIDRSDERRRLYGKRTILFVDEVHRWNKAQQDALLPW 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+++ IGATTENP F + L+SR R+ L PL P ++ +A+ D G K
Sbjct: 133 VENGTVILIGATTENPFFEVNRALVSRSRIFQLKPLSPENLRETADKALADRERGYGK-- 190
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
RV A+E L GDAR LNALE+ AI +V P E++
Sbjct: 191 --WRVSFEEGALEHLVEVAGGDARSLLNALEL-AIETSVPWPPPVDAEIK---------- 237
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V+ + A+E+ Q + + YD+ G+ H++ ISA KS+RG+D DAA+YWLA+M+ GE
Sbjct: 238 ----VSFEAAEESIQRRAVLYDKEGDYHFDTISAFIKSVRGSDPDAALYWLAKMVRAGED 293
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +I RR++ ASEDVGLADP ALN +SC Q+ +G PE N LA YLA APKS
Sbjct: 294 PSFIFRRMIILASEDVGLADPGALNVVISCAQSFDRIGFPEGNFPLAHACLYLATAPKSN 353
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S A +V RE + VP HLR+A ++ + G+G GYIY D A Q +L
Sbjct: 354 SAMAFFDALAEVDRE----DAEVPNHLRDA-SRDKEGFGHGDGYIYPHAYRDHWAAQQYL 408
Query: 539 PPSLEGYKFLD 549
P +L G F +
Sbjct: 409 PTALRGKTFYN 419
>gi|357030712|ref|ZP_09092656.1| recombination factor protein RarA [Gluconobacter morbifer G707]
gi|356415406|gb|EHH69049.1| recombination factor protein RarA [Gluconobacter morbifer G707]
Length = 497
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/433 (44%), Positives = 257/433 (59%), Gaps = 44/433 (10%)
Query: 118 HVPH------APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
HVP PL++R+RP + +VVGQDHLL P L + L S+I WG PG GK
Sbjct: 68 HVPRRSPPRTQPLADRLRPRALEEVVGQDHLLGPEGTLTRMLARGTLSSLILWGGPGCGK 127
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TT+A+ + + F +SAV SGV D+R A ++A + + + K T+LFVDE+HRFN+
Sbjct: 128 TTIARLLAGRANL--YFAQISAVFSGVSDLRKAFDEADRRQDATGKGTLLFVDEIHRFNR 185
Query: 232 SQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291
+QQDSFLP +E G++V +GATTENPSF L LLSRC+VL LN L +E LL+RA
Sbjct: 186 AQQDSFLPYVERGTVVLVGATTENPSFALNAALLSRCQVLVLNRLDDASLEKLLERA--- 242
Query: 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351
+ + G R+ ++ +A L + DGD R LN +E + R+
Sbjct: 243 ------EQLIGHRLPLDPEARASLRAMADGDGRYLLNMVEQLVVLEPGRI---------- 286
Query: 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411
+T D + + YDR EEHYNLISALHKS+RG+D DA +YW
Sbjct: 287 -------------LTSKDLAAILSRRAILYDRDREEHYNLISALHKSLRGSDPDAGLYWF 333
Query: 412 ARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVA 471
ARMLEGGE P YIARRL RFA+EDVG ADP AL AV+ ++ LG PE + LAQ V
Sbjct: 334 ARMLEGGEDPRYIARRLTRFAAEDVGQADPTALPLAVAAWETYERLGSPEGELALAQLVV 393
Query: 472 YLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-- 529
+LA APKS ++Y A AA+++ R++ P H+ NAPT LMK+IGYGKGY Y D
Sbjct: 394 HLATAPKSNAVYVAYKAARRLARDTGSLMP--PSHILNAPTNLMKDIGYGKGYEYDHDTE 451
Query: 530 DPSAKQSFLPPSL 542
+ + Q++ P +
Sbjct: 452 EGFSGQNYFPDGM 464
>gi|258647387|ref|ZP_05734856.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
gi|260852753|gb|EEX72622.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
Length = 422
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 200/429 (46%), Positives = 268/429 (62%), Gaps = 38/429 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++D VGQ HL+ P ++LR+ + + R+ S I WGPPG GKTTLA+ V
Sbjct: 3 PLAERLRPTSLDDYVGQQHLVGPGAVLRNMIDAGRITSFILWGPPGVGKTTLARI----V 58
Query: 183 AVSYK--FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A +K F LSAV SGVKDVRD +E A K R S++ +LF+DE+HRF+KSQQDS L
Sbjct: 59 ATQFKAPFYTLSAVNSGVKDVRDVIEKAAKNRFFSDQSPILFIDEIHRFSKSQQDSLLAA 118
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+I IGATTENPSF +I PLLSRC+V LN L ++ LL+ A+ + L K
Sbjct: 119 VENGTITLIGATTENPSFEVIRPLLSRCQVYVLNSLTKDELLQLLQHAL--TTDELLKE- 175
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++E+ + L GDAR LN L++ +T A S+G P
Sbjct: 176 --QQIELKE--TDALLRYSGGDARKLLNILDL--VTQAA---------------SEG--P 212
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
V +L A+ H YD+ GE HY++ISA KS+RG+D DAA+YWLARM+EGGE
Sbjct: 213 IVIDNSLVTARLQQHPAH--YDKGGEMHYDIISAFIKSLRGSDPDAALYWLARMIEGGED 270
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA +PKS
Sbjct: 271 PKFIARRLVISAAEDIGLANPNALLLANAAFDAVAKIGWPEARIPLAEATVYLANSPKSN 330
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y A+ AA + +RE+ + VPLHLRNAPTKL+K++GY GY Y D P A Q +L
Sbjct: 331 SAYLAIDAALERVRET--GDLPVPLHLRNAPTKLLKDLGYADGYCYPHDYPGNFAAQQYL 388
Query: 539 PPSLEGYKF 547
P L+ F
Sbjct: 389 PDVLQNEGF 397
>gi|417854582|ref|ZP_12499869.1| recombination factor protein RarA [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338217657|gb|EGP03503.1| recombination factor protein RarA [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 445
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 184/428 (42%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ +++RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HAEVERI--SAVTSGIKEIREAIERAKENRL-ADRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTLIFIGATTENPSFELNNALLSRAKVYILKSLSTQEISEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN+LE+ A ++ +E E+
Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMA-------------DMAEETEAGKA---- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPTHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|313146404|ref|ZP_07808597.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
gi|313135171|gb|EFR52531.1| recombination factor protein RarA [Bacteroides fragilis 3_1_12]
Length = 423
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 259/423 (61%), Gaps = 34/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+ +
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLRSLEKEDLLELLQRAITT-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ + S GDAR LN LE+ VE E E
Sbjct: 176 RKIELKETSAILRFSG--GDARKLLNILELV---------------VESETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ FLP
Sbjct: 333 YNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQQFLPD 390
Query: 541 SLE 543
++
Sbjct: 391 EIK 393
>gi|260580369|ref|ZP_05848198.1| replication-associated recombination protein A [Haemophilus
influenzae RdAW]
gi|260093046|gb|EEW76980.1| replication-associated recombination protein A [Haemophilus
influenzae RdAW]
Length = 446
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/428 (42%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPKRGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YL++APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFSRVGAYEGERAIAQAIIYLSVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|340516248|gb|EGR46497.1| hypothetical protein TRIREDRAFT_65926 [Trichoderma reesei QM6a]
Length = 543
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 196/430 (45%), Positives = 262/430 (60%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP ++DV GQ+ L+ P +LRS + SNR+PS+I WG GTGKTT+A+ I +
Sbjct: 127 APLAERMRPKTLDDVCGQE-LVGPEGVLRSLIESNRVPSMILWGASGTGKTTIARCIAH- 184
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A +SGV++ + +A + ++T++F DE+HRFNK+QQD FL +
Sbjct: 185 -MVGGRFIELNATSSGVQECKRLFAEAASELQLTGRKTIIFCDEIHRFNKAQQDVFLRPV 243
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCR TL PL DV +L+RA +SV
Sbjct: 244 EAGTITLIGATTENPSFKVANALLSRCRTFTLRPLGADDVVAILRRA-----RKAEESVY 298
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++ + +E+L DGDAR ALN LE++ +G
Sbjct: 299 PPSPLIDDEMMEYLARFSDGDARTALNLLELALSLTL----------------REG---- 338
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T D K++ K L YDRAG++HY+ ISA HKS+RGND DAA+Y+LARML+ GE P
Sbjct: 339 ---MTKDAIKQSL-TKTLVYDRAGDQHYDTISAFHKSVRGNDPDAALYYLARMLQSGEDP 394
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A S Y A +G+PE + LA C L LAPKS
Sbjct: 395 LFIARRMVVIASEDVGLADNSLLTLATSTYTATQQIGLPEARIPLAHCAVALCLAPKSTR 454
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YR L A +RE + VPLHLRNAPT+LM+++G G Y Y P+ D KQ +LP
Sbjct: 455 AYRGLNNAFAALREPGVASLPVPLHLRNAPTRLMRDLGCGAEYKYPPNYRDGKVKQRYLP 514
Query: 540 PSLEGYKFLD 549
L G +FL+
Sbjct: 515 EELLGRRFLE 524
>gi|32034563|ref|ZP_00134719.1| COG2256: ATPase related to the helicase subunit of the Holliday
junction resolvase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 428
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/423 (44%), Positives = 259/423 (61%), Gaps = 31/423 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 1 MRPRTLAEYIGQAHLIEEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVE 60
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IEDG+I+
Sbjct: 61 --RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTII 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G +
Sbjct: 118 FIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GNESYYI 173
Query: 308 NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367
+ IE L +GDAR ALN LE+ + A + S G AL+
Sbjct: 174 EDNVIELLADYVNGDARFALNCLELMSDMAEI--------------SSQGKRLNKALLA- 218
Query: 368 DDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427
E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PLY+ARR
Sbjct: 219 ----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARR 274
Query: 428 LVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487
L+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++Y A
Sbjct: 275 LLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAVYNAFN 334
Query: 488 AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEG 544
A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ PP L+
Sbjct: 335 EAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFPPELKD 392
Query: 545 YKF 547
F
Sbjct: 393 TVF 395
>gi|70731237|ref|YP_260978.1| recombination factor protein RarA [Pseudomonas protegens Pf-5]
gi|68345536|gb|AAY93142.1| recombination factor protein RarA [Pseudomonas protegens Pf-5]
Length = 441
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 191/426 (44%), Positives = 263/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQQHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALGTLVQRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L S DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLSDEGFQMLLSAADGDGRRMLNLLENASDLA-----------------EDGGEISV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y AA + E G E VP+HLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKAAMRAAAEH-GSLE-VPIHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPEELE 404
>gi|187929625|ref|YP_001900112.1| recombination factor protein RarA [Ralstonia pickettii 12J]
gi|309781609|ref|ZP_07676343.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA]
gi|404396732|ref|ZP_10988526.1| hypothetical protein HMPREF0989_04519 [Ralstonia sp. 5_2_56FAA]
gi|187726515|gb|ACD27680.1| AAA ATPase central domain protein [Ralstonia pickettii 12J]
gi|308919584|gb|EFP65247.1| magnesium chelatase, subunit ChlI family [Ralstonia sp. 5_7_47FAA]
gi|348610863|gb|EGY60543.1| hypothetical protein HMPREF0989_04519 [Ralstonia sp. 5_2_56FAA]
Length = 435
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/423 (45%), Positives = 255/423 (60%), Gaps = 34/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP + +DV+GQ HLL P LR A S S+I WGPPG GKTTLA+ + N
Sbjct: 2 PLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMAN-- 59
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A + R +RT++FVDEVHRFNKSQQD+FLP +E
Sbjct: 60 AFDAEFIALSAVLSGVKDIREAVERAEQFRAH-GRRTLVFVDEVHRFNKSQQDAFLPHVE 118
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G FIGATTENPSF + LLSR V L L +++ L +RA + +GG
Sbjct: 119 SGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERA--------RQELGG 170
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E A++ + ++ DGD R LN +EI A A + V V++
Sbjct: 171 --LEWTPAALDAIVASADGDGRKLLNNIEIVARAARAQADGDAVPAVDE----------- 217
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+ A +D+ G+ Y+ ISALHKS+RG+D D A+YW RML+GG P
Sbjct: 218 ALLA-----SALSENLRRFDKGGDAFYDQISALHKSVRGSDPDGALYWFCRMLDGGADPR 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A + + LG PE + LAQ V YLA+APKS +
Sbjct: 273 YLARRIVRMAWEDIGLADPRAGRITLDAAETYERLGSPEGELALAQAVIYLAIAPKSNAG 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+ + + +N VP+HLRNAPTKLMKE+GYG Y Y D+P +A +++ P
Sbjct: 333 YNAYNAARAFVSQDKSRN--VPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGETYFP 390
Query: 540 PSL 542
L
Sbjct: 391 DDL 393
>gi|332162218|ref|YP_004298795.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666448|gb|ADZ43092.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 444
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 265/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 12 PLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 72 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 128
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++++A+ D G GG
Sbjct: 129 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIEQAMSDSRRGY----GG 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + +++G V
Sbjct: 185 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DANG----V 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 227 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 286
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 287 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 346
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 347 YSAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 404
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 405 PEMASTRY 412
>gi|423692221|ref|ZP_17666741.1| recombination factor protein RarA [Pseudomonas fluorescens SS101]
gi|387999649|gb|EIK60978.1| recombination factor protein RarA [Pseudomonas fluorescens SS101]
Length = 441
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 264/426 (61%), Gaps = 38/426 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRSTNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + LL RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAAMRKLLHRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L + DGD R LN LE ++ A DG V
Sbjct: 185 RQLSLSDEGFKILLTAADGDGRRFLNLLENASDLA-----------------EDGGEIGV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG
Sbjct: 228 DLLQSLLGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y +A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + +
Sbjct: 341 AVYMGFKSALRAAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLE 543
P LE
Sbjct: 399 FPDELE 404
>gi|332662821|ref|YP_004445609.1| ATPase AAA [Haliscomenobacter hydrossis DSM 1100]
gi|332331635|gb|AEE48736.1| AAA ATPase central domain protein [Haliscomenobacter hydrossis DSM
1100]
Length = 425
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 267/440 (60%), Gaps = 37/440 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D +GQ+HL+ S+LR A+ + LPSII WGPPG GKTTLA + + +
Sbjct: 3 PLAERMRPTRLADYLGQEHLVGEGSVLRQALAAGFLPSIILWGPPGVGKTTLANILASEL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA+ +GVKDVRD ++ A + R + +LF+DE+HRF+KSQQD+ L +E
Sbjct: 63 GRP--FYSLSAIAAGVKDVRDTIQKAEQQRFFNRPNPILFIDEIHRFSKSQQDALLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I +GATTENPSF +I LLSRC+V L L+ + L++ A+ K V
Sbjct: 121 KGVITLMGATTENPSFEVIPALLSRCQVYVLKLLETDQLLQLIQEALQKDEYLRDKKV-- 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R E ++DA + GDAR N LE+ IT+ + V E
Sbjct: 179 -RFE-SYDA---MLHYSGGDARKLYNILEL--ITS-------QAPNVNGE---------- 214
Query: 363 ALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ +DDA Q AYD+ GE+HY++ SA KS+RG+D +AA+YWLARM+EGGE+
Sbjct: 215 --IVVDDALVTNILQQHITAYDKGGEQHYDVASAFIKSIRGSDPNAAVYWLARMIEGGEE 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARR+V A+EDVGLA+P AL A + +QA +G+PE +IL+Q V YLA +PKS
Sbjct: 273 VKFIARRMVIAAAEDVGLANPNALLMATTAFQAVQAVGLPEARIILSQAVIYLATSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y A+ AQ+++ + N+ VPLHLRNAPT+LMK++ YGK Y Y D P +Q +L
Sbjct: 333 SAYMAINKAQELVHQQ--GNQPVPLHLRNAPTQLMKKLDYGKAYQYAHDFPQNFVEQEYL 390
Query: 539 PPSLEGYKFLDWPKSNTTDK 558
P L G K + P N ++
Sbjct: 391 PEKLSGTKLFE-PAENPAEE 409
>gi|421599295|ref|ZP_16042530.1| recombination factor protein RarA [Bradyrhizobium sp. CCGE-LA001]
gi|404268597|gb|EJZ33042.1| recombination factor protein RarA [Bradyrhizobium sp. CCGE-LA001]
Length = 444
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/435 (44%), Positives = 261/435 (60%), Gaps = 39/435 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
PH PL +R+RP +++VVGQDH+L P+ L + + L S++FWGPPGTGKTT+A+ +
Sbjct: 23 PH-PLPDRLRPRALSEVVGQDHILGPDGALTRMLETRTLGSLVFWGPPGTGKTTVARLLA 81
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ A F +SAV SGV D++ A DA + R + K T+LFVDEVHRFN++QQDSFLP
Sbjct: 82 D--ATDLHFEQISAVFSGVADLKKAF-DAARARREMGKGTLLFVDEVHRFNRAQQDSFLP 138
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
V+EDG++V +GATTENPSF L LLSR RVL L +E L A ++
Sbjct: 139 VMEDGTVVMVGATTENPSFELNAALLSRARVLVFRSLDAAAIEKLFAHA---------EA 189
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ G ++ ++ +A L DGD R +L E EV + DE
Sbjct: 190 IEGKKLPLDAEARAVLVRMADGDGRASLTLAE-------------EVWRSARADE----- 231
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ +E Q + YD++ + HYNLISALHKS+RG+D DAA+Y+LARML+ GE
Sbjct: 232 ----IFNAAQLQEILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMLDAGE 287
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V YLA APKS
Sbjct: 288 DPLFLARRVVRMAVEDIGLADPQALVIANAAKDAFDFLGHPEGELAIAQAVVYLATAPKS 347
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSF 537
++Y A G A +V +++ + P H+ N+PTKLMK GYG GY Y D P A Q +
Sbjct: 348 NAVYTAFGTAMQVAKQA--GSLLPPKHILNSPTKLMKSEGYGSGYAYDHDAPDAFSGQDY 405
Query: 538 LPPSLEGYKFLDWPK 552
P +L F D P+
Sbjct: 406 FPEALGRQTFYDPPE 420
>gi|389714762|ref|ZP_10187335.1| recombination factor protein RarA [Acinetobacter sp. HA]
gi|388609738|gb|EIM38885.1| recombination factor protein RarA [Acinetobacter sp. HA]
Length = 423
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/431 (43%), Positives = 265/431 (61%), Gaps = 38/431 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL ER+RP ++ +++GQDHLL N+ LR + LPSIIFWGPPG GKTT+A ++
Sbjct: 5 HIPLPERLRPRDLAEIIGQDHLLGENAPLRQMIDQGHLPSIIFWGPPGVGKTTIA--LLL 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ AV F+ LSA+ +GVK++R+ + ++ L V+F+DE+HRFNKSQQD+ L
Sbjct: 63 AQAVDRPFISLSALNTGVKELREVIAESVDLLTP-----VVFIDEIHRFNKSQQDALLNA 117
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF + + LLSRC+V TLN L ++ LL +A+ K +
Sbjct: 118 VEKGKITLIGATTENPSFEVNSALLSRCQVYTLNALSDEAIQTLLTQAIQT-----DKFL 172
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+++ + + L GDAR ALN L++ A T E +QE+
Sbjct: 173 QERYIQI--EEFDALLQFAAGDARKALNLLDLIASTF----------EADQEN------- 213
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T + Q YD++GE+HY+L+SA KS+RG+D DAA+YW+ARML+GGE
Sbjct: 214 ---IITNAIVVKVAQQNIARYDKSGEQHYDLVSAFIKSIRGSDPDAALYWMARMLKGGED 270
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P++IARR++ ASED+G ++P AL A C+++ +GMPEC +IL QC YLA + KS
Sbjct: 271 PVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAIGMPECRIILGQCAVYLATSAKSN 330
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y A+ A + ++ N VPLHLRNA TKLMKE GYG Y+Y + P Q +L
Sbjct: 331 STYLAINKAMDLAEKTA--NLPVPLHLRNATTKLMKEQGYGVNYLYPHNYPEHFVLQDYL 388
Query: 539 PPSLEGYKFLD 549
PP L+G K +
Sbjct: 389 PPELKGTKLYE 399
>gi|53713173|ref|YP_099165.1| recombination factor protein RarA [Bacteroides fragilis YCH46]
gi|52216038|dbj|BAD48631.1| putative AAA family ATPase [Bacteroides fragilis YCH46]
Length = 423
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 197/443 (44%), Positives = 265/443 (59%), Gaps = 45/443 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ + + +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNKFFTQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ TL L+ D+ LL+RA+
Sbjct: 121 HGTVTLIGATTENPSFEVIRPLLSRCQLYTLKSLEKEDLLELLQRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V + +E + GDAR LN LE+ VE E E
Sbjct: 169 TDVVLKERKMELKETGAMLRFSGGDARKLLNILELV---------------VESETEE-- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVIITDDLVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A ++RE+ N VPLHLRNAPTKLMK++GYG+ Y Y + KQ
Sbjct: 328 KSNSAYNAINDALALVRET--GNLPVPLHLRNAPTKLMKQLGYGQEYKYAHNYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDWPKSNTTDK 558
FLP ++ K L P+ N ++
Sbjct: 386 QFLPDEIKA-KQLWQPQHNPAEQ 407
>gi|359300086|ref|ZP_09185925.1| recombination factor protein RarA [Haemophilus [parainfluenzae]
CCUG 13788]
Length = 447
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/425 (44%), Positives = 258/425 (60%), Gaps = 31/425 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP + + +GQ HLLS L A+ + S+I WGPPGTGKTTLA+ I
Sbjct: 13 YRPLAARMRPRTLAEYIGQSHLLSEGKPLYRAILAGHAHSMILWGPPGTGKTTLAEIIAG 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
K LSAVTSGVK++R+A+E A K+ ++ +RT+LFVDEVHRFNKSQQD+FLP
Sbjct: 73 HFNAEVK--RLSAVTSGVKEIREAIERA-KINQQAGRRTLLFVDEVHRFNKSQQDAFLPY 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IE+G+I+FIGATTENPSF L LLSR R L PL+ ++ +L+ A+ D GL
Sbjct: 130 IENGTIIFIGATTENPSFELNNALLSRARTYILKPLQAVEILKILQNALADKTRGL---- 185
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + D + L +GDAR AL+ LE+ A A + S G
Sbjct: 186 GSESFVLEDDVLSLLSDYVNGDARYALSCLELMADMA--------------QSTSKGKLL 231
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+T E + +D+ G+ +Y+LISALHKS+RG+ D A+YW R+L G
Sbjct: 232 NKTLLT-----EILGERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWFTRILAAGGD 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ V YLA+APKS
Sbjct: 287 PLYVARRLLAIASEDVGNADPRAMQIALAAWDCYTRVGAYEGERAIAQAVIYLAVAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A+K+++E+ + VP HLRNAPT LMK +GYG+ Y Y ++P +A +++
Sbjct: 347 AVYTAFNQAKKLVKETADYD--VPEHLRNAPTALMKSLGYGEEYRYAHNEPNAYAAGENY 404
Query: 538 LPPSL 542
PP L
Sbjct: 405 FPPEL 409
>gi|50086546|ref|YP_048056.1| recombination factor protein RarA [Acinetobacter sp. ADP1]
gi|49532520|emb|CAG70234.1| putative ATPase [Acinetobacter sp. ADP1]
Length = 423
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/439 (43%), Positives = 270/439 (61%), Gaps = 46/439 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL ER+RP ++++++GQDHLL ++ LR + LPSIIFWGPPG GKTT+A ++
Sbjct: 5 HIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIA--LLL 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ AV FV LSA+ +GVK++R+ + ++ L V+F+DE+HRFNKSQQD+ L
Sbjct: 63 AQAVDRPFVSLSALNTGVKELREIIAESGDLLTP-----VVFIDEIHRFNKSQQDALLNA 117
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF + + LLSRC+V TLN L ++ L+ RA+D S S
Sbjct: 118 VEKGKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQNLIDRAID------SDSF 171
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
R ++ + E L GDAR ALN +++ A T E +QE+
Sbjct: 172 LKQR-HIHIEEYEALIQFAAGDARKALNLIDLIASTF----------EPDQEN------- 213
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+VT + Q YD++GE+HY++ISA KS+RG+D DAA+YW+ARM++GGE
Sbjct: 214 ---IVTNAVTVKVAQQNIARYDKSGEQHYDIISAFIKSIRGSDPDAALYWMARMIKGGED 270
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P++IARR++ ASED+G ++P AL A C+++ +GMPE +IL QC YLA +PKS
Sbjct: 271 PVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQCAVYLATSPKSN 330
Query: 481 SIY----RALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AK 534
S Y RAL A+K N VPLHLRNAPTKLMK+ GYG Y+Y P
Sbjct: 331 STYLAIDRALALAEKT------ANLPVPLHLRNAPTKLMKQQGYGADYLYPHHYPEHFVL 384
Query: 535 QSFLPPSLEGYKFLDWPKS 553
Q +LPP L+G K ++ ++
Sbjct: 385 QEYLPPELKGTKLYEFSRN 403
>gi|167034603|ref|YP_001669834.1| recombination factor protein RarA [Pseudomonas putida GB-1]
gi|166861091|gb|ABY99498.1| AAA ATPase central domain protein [Pseudomonas putida GB-1]
Length = 441
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 259/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSNLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V +A + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDEAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 EMLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYMGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPDELE 404
>gi|170717512|ref|YP_001784604.1| recombination factor protein RarA [Haemophilus somnus 2336]
gi|168825641|gb|ACA31012.1| AAA ATPase central domain protein [Haemophilus somnus 2336]
Length = 446
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/441 (42%), Positives = 269/441 (60%), Gaps = 34/441 (7%)
Query: 113 STTALHVPHA---PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
ST +L H+ PL+ +MRP + GQ+HL+ L A+ + + S+IFWGPPGT
Sbjct: 2 STFSLDFSHSAFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGT 61
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTTLA+ I + + + SAVT+GVK++R+++E A++ R+ ++T+LFVDEVHRF
Sbjct: 62 GKTTLAEIIAQQIHAQVERI--SAVTAGVKEIRESIERAKQNRLMG-QQTILFVDEVHRF 118
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
NK+QQD+FLP IE+G+I+FIGATTENPSF L LLSR +V L PL ++ +L+ A+
Sbjct: 119 NKTQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVYILKPLTTSNIVTVLQNAI 178
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349
D GL K R+ + +E L +GDAR+ALN LE+ V
Sbjct: 179 QDAEQGLGKE----RLIFAENVLETLAEYVNGDARLALNCLELM---------------V 219
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
+ DE++ L+ E + +D+ G+ Y+LISALHKS+RG+ DAA+Y
Sbjct: 220 DMADETEKGK----LINHRLLTEVLGERQARFDKQGDRFYDLISALHKSIRGSAPDAALY 275
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
W AR++ G PLY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ
Sbjct: 276 WYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQA 335
Query: 470 VAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
+ YLA+APKS ++Y A A+K+ +E + VP+HLRNAPT LMKE+GYG Y Y D
Sbjct: 336 IVYLAVAPKSNAVYVAFKQAKKLAKEM--PDYDVPVHLRNAPTHLMKELGYGAEYRYAHD 393
Query: 530 DP---SAKQSFLPPSLEGYKF 547
+P +A +++ P L+ KF
Sbjct: 394 EPNAYAAGENYFPKELKDTKF 414
>gi|424934232|ref|ZP_18352604.1| Recombination factor protein RarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|407808419|gb|EKF79670.1| Recombination factor protein RarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
Length = 447
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 258/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLDQAMNDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMA----------------ESDDSGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LMAEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+ + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAALADARDRPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|154495040|ref|ZP_02034045.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
43184]
gi|423725109|ref|ZP_17699249.1| hypothetical protein HMPREF1078_03143 [Parabacteroides merdae
CL09T00C40]
gi|154085590|gb|EDN84635.1| ATPase, AAA family [Parabacteroides merdae ATCC 43184]
gi|409234737|gb|EKN27561.1| hypothetical protein HMPREF1078_03143 [Parabacteroides merdae
CL09T00C40]
Length = 426
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/424 (45%), Positives = 259/424 (61%), Gaps = 37/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+PS I WGPPG GKTTLA+ I N +
Sbjct: 5 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPSFILWGPPGVGKTTLAQIISNKL 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA++SGVKDVR+ +E A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 65 EAP--FYTLSAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVE 122
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC+V L L+ D+ LL +AV + + + K +
Sbjct: 123 TGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEKADLLTLLNKAVTE--DIILKDMNI 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
E + + GDAR LN LE+ + AA E+ +E
Sbjct: 181 VLAETDA-----MLRYSGGDARKLLNILEL--VVAA-----------EEGNEK------- 215
Query: 363 ALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ + D K E Q AYD+ GE HY++ISA KS+RG+D DAA+YWLARM+ GGE
Sbjct: 216 --IEITDEKVVERLQENPAAYDKGGEMHYDIISAFIKSIRGSDPDAAVYWLARMVAGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRLV ASED+GLA+P AL A +C+ A +G PE +ILA+ YLA +PKS
Sbjct: 274 PEFIARRLVISASEDIGLANPNALLLANACFDALKKIGWPEGRIILAETTVYLACSPKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+ A +++ + N VPLHLRNAPTKLM E+ YGK Y Y D + KQ FL
Sbjct: 334 SAYMAINDALELVNRT--GNLPVPLHLRNAPTKLMAELNYGKDYKYAHDYENHFVKQEFL 391
Query: 539 PPSL 542
P +
Sbjct: 392 PKEI 395
>gi|323525162|ref|YP_004227315.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
gi|323382164|gb|ADX54255.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
Length = 437
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 258/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VFIGATTENPSF + + LLSR V L L ++ LL+RA +GG
Sbjct: 127 SGLFVFIGATTENPSFEVNSALLSRAAVYVLKSLDEDELRELLERA--------QHELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A A+ +++ E DG
Sbjct: 179 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAASQ----------QKKTEIDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG+ D A+YW RML+GG P
Sbjct: 227 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + + ++ VP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFVGKD--KSRAVPVHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
S+
Sbjct: 395 ESM 397
>gi|427417885|ref|ZP_18908068.1| AAA ATPase [Leptolyngbya sp. PCC 7375]
gi|425760598|gb|EKV01451.1| AAA ATPase [Leptolyngbya sp. PCC 7375]
Length = 727
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 265/429 (61%), Gaps = 35/429 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP N+++ VGQD ++ P LLR A+ +++L S++F+GPPGTGKTTLA+ I N+
Sbjct: 16 APLAARMRPRNLDEYVGQDAIVGPGRLLRRAIQADQLSSLLFYGPPGTGKTTLAQVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ ++AV +GVKD+R A+ A+ LR + +RT+LFVDEVHRFNKSQQD+ LP +
Sbjct: 76 TKA--HFIAINAVLAGVKDIRSAISTAQDLRGQHGQRTILFVDEVHRFNKSQQDALLPWV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E+G+++ IGATTENP F + L+SR RV L L+P D+ ++ + + D G G
Sbjct: 134 ENGTVILIGATTENPYFEVNKALVSRSRVFQLKSLEPDDLRQIVHQTLTDKERG----YG 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
++++ DA++ L + +GDAR LNALE++ T +P
Sbjct: 190 DLTIQIDEDALDHLVNVANGDARALLNALELAVET----------------------TPD 227
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V+ ++L A+E+ Q + + YD+ G+ H++ ISA KSMRG+D DA +YWLARM+ GE P
Sbjct: 228 VS-ISLAVAEESIQRRAVLYDKEGDAHFDTISAFIKSMRGSDPDATLYWLARMVYAGEDP 286
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
YI RR+V FA ED+GLADP A+ A SC QA +GMPE LAQ YLA PKS S
Sbjct: 287 RYIFRRMVIFAGEDIGLADPNAMVVANSCAQAFDRVGMPEGRYPLAQAALYLATCPKSNS 346
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLP 539
+ A V +E + VP LR+A + +E G+G+GY+Y D +Q +LP
Sbjct: 347 VMGFFAALATVEKE---READVPNPLRDA-NRDKQEFGHGQGYLYPHAYRDHWVEQQYLP 402
Query: 540 PSLEGYKFL 548
L+G F
Sbjct: 403 TGLQGKVFF 411
>gi|197304052|ref|ZP_03169081.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
29176]
gi|197296877|gb|EDY31448.1| ATPase, AAA family [Ruminococcus lactaris ATCC 29176]
Length = 443
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 181/430 (42%), Positives = 269/430 (62%), Gaps = 29/430 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP + +VVGQ H++ LL A+ +++L S+IF+GPPGTGKTTLAK I N+
Sbjct: 21 SPLASRMRPTTLEEVVGQQHIIGKGKLLYRAIKADKLSSLIFYGPPGTGKTTLAKVIANT 80
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ +K ++A +G KD+ + V+ A+ L+ K+T+LF+DE+HRFNK QQD LP +
Sbjct: 81 TSAEFK--QINATVAGKKDMEEVVKAAKDLQGMYGKKTILFIDEIHRFNKGQQDYLLPFV 138
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++ IGATTENP F + L+SR + L PL+ D++ LL RAV+D G+ G
Sbjct: 139 EDGTLILIGATTENPYFEVNGALISRSSIFELKPLEKEDIKKLLVRAVEDTEKGM----G 194
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+++ DA+EFL GDAR ALNA+E+ +T +D S
Sbjct: 195 SFHAQIDPDALEFLADVSGGDARNALNAVELGILT------------------TDRSSDG 236
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +TL+ A E Q + + YD+ G+ HY++ISA KSMRG+D DAA+++LA+ML GE
Sbjct: 237 IIHLTLEVASECIQKRVVNYDKKGDNHYDIISAFIKSMRGSDPDAAVFYLAKMLYAGEDV 296
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASEDVG ADP+AL AV+ QA +GMPE +IL+Q V Y+A APKS +
Sbjct: 297 KFIARRIMICASEDVGNADPMALTVAVAAAQAVERIGMPESQIILSQAVTYVASAPKSNA 356
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
A+ AA + +++ VP HL++A K +++G+G GY Y D P +Q +LP
Sbjct: 357 AVNAIFAATEAVKK---YKTTVPSHLQDAHYKGAEKLGHGTGYKYAHDYPGHYVEQQYLP 413
Query: 540 PSLEGYKFLD 549
++ +F +
Sbjct: 414 DEIKDARFYE 423
>gi|377576323|ref|ZP_09805307.1| replication-associated recombination protein RarA [Escherichia
hermannii NBRC 105704]
gi|377542355|dbj|GAB50472.1| replication-associated recombination protein RarA [Escherichia
hermannii NBRC 105704]
Length = 447
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 254/428 (59%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIGRYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADIERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A+ D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTADDIEQVLIQAMSDAKRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + +GDAR ALN LE+ A A K + + E E G
Sbjct: 188 QDIVLPDDTRRSIAELVNGDARRALNTLEMMADMAEADASGKRILKAELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSSPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+ + VP HLRNAPTKLMKE+GYG Y Y D+P +A + + P
Sbjct: 350 YTAFKAALSDARDRPDYD--VPAHLRNAPTKLMKEMGYGDEYRYAHDEPNAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAQTRY 415
>gi|290510640|ref|ZP_06550010.1| ATPase [Klebsiella sp. 1_1_55]
gi|289777356|gb|EFD85354.1| ATPase [Klebsiella sp. 1_1_55]
Length = 447
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 260/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L+ A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLQRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLDQAMNDKSRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QDIILPDETRKAIAELVNGDARRALNTLEMMADMA----------------ESDDSGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKAEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+ + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAALSDARDRPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|397693297|ref|YP_006531177.1| recombination factor protein RarA [Pseudomonas putida DOT-T1E]
gi|397330027|gb|AFO46386.1| recombination factor protein RarA [Pseudomonas putida DOT-T1E]
Length = 441
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 191/431 (44%), Positives = 262/431 (60%), Gaps = 40/431 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + ++ +G
Sbjct: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ARGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V DA + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 EMLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYVGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLEGYKF 547
+ P LE ++
Sbjct: 398 YFPDELEPRRY 408
>gi|329955240|ref|ZP_08296197.1| ATPase, AAA family [Bacteroides clarus YIT 12056]
gi|328526239|gb|EGF53258.1| ATPase, AAA family [Bacteroides clarus YIT 12056]
Length = 431
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 196/444 (44%), Positives = 265/444 (59%), Gaps = 47/444 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGQGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVRDVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLRRAIT------------ 168
Query: 303 TRVEVNHDAIEF-----LCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T V++ IE + GDAR LN L++ +S+
Sbjct: 169 TDVQLKERRIELKETTAMLRYSGGDARKLLNILDLVV-------------------QSEA 209
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
P V +T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 210 GDPVV--ITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV ASED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISASEDIGLANPNALLLANACFDTIMKVGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535
KS S Y A+ A +++R++ N VPLHLRNAPTKLMK++GYG Y Y D P +Q
Sbjct: 328 KSNSAYMAINDALELVRQT--GNLPVPLHLRNAPTKLMKQLGYGGNYKYAHDYPGNFVRQ 385
Query: 536 SFLPPSLEGYKFLDW-PKSNTTDK 558
FLP L+ + W P+ N ++
Sbjct: 386 QFLPDDLKDRRI--WHPQDNPAEQ 407
>gi|28198581|ref|NP_778895.1| recombination factor protein RarA [Xylella fastidiosa Temecula1]
gi|182681262|ref|YP_001829422.1| recombination factor protein RarA [Xylella fastidiosa M23]
gi|386084765|ref|YP_006001047.1| recombination factor protein RarA [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|28056665|gb|AAO28544.1| ATPase [Xylella fastidiosa Temecula1]
gi|182631372|gb|ACB92148.1| AAA ATPase central domain protein [Xylella fastidiosa M23]
gi|307579712|gb|ADN63681.1| recombination factor protein RarA [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 453
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 253/407 (62%), Gaps = 32/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQ LL P+ L AV S + S+I WGPPG GKTTL+ + + +
Sbjct: 22 PLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHYI 81
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV SG+ +VR + DA + R +RTVLFVDEVHRFNK QQD+FLP IE
Sbjct: 82 DAEFRSV--SAVLSGLPEVRQILADAAQ-RFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+F+GATTENPSF L + LLSRCRV L + D+ + L+RA+ D GL GG
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQDTERGL----GG 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++EV+ ++ + DGD R AL LEI+A E+ Q+++
Sbjct: 195 QKIEVSQASLLEIAKAADGDVRRALTLLEIAA-------------ELAQDEQ-------- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + +D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P+
Sbjct: 234 --ITADLLSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPI 291
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A + A+ + LG PE ++ AQ V YLA KS +
Sbjct: 292 YLARRLTRIAIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLASTAKSNAG 351
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A++ IR++ Q+ VPLHLRNAPT+LMK +GYG Y Y D
Sbjct: 352 YVAFNVAKEDIRQTGTQD--VPLHLRNAPTRLMKSLGYGIEYQYDHD 396
>gi|422658626|ref|ZP_16721059.1| recombination factor protein RarA [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331017252|gb|EGH97308.1| recombination factor protein RarA [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 440
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 265/427 (62%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----DRGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + L + DGD R LN LE ++ A DG +
Sbjct: 185 RKLTLSDEGFAMLMAAADGDGRRMLNLLENASDLA-----------------EDGSEIDI 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG
Sbjct: 228 ELLQSLLGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A AA +RE+ VPLHLRNAPTKLMK++GYG+ Y Y D+P +A +
Sbjct: 341 AVYMAFKAA---MREAGDHGSLEVPLHLRNAPTKLMKQLGYGEEYRYAHDEPEAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPDELE 404
>gi|71274773|ref|ZP_00651061.1| AAA ATPase, central region [Xylella fastidiosa Dixon]
gi|170729983|ref|YP_001775416.1| recombination factor protein RarA [Xylella fastidiosa M12]
gi|71164505|gb|EAO14219.1| AAA ATPase, central region [Xylella fastidiosa Dixon]
gi|71728814|gb|EAO30954.1| AAA ATPase, central region [Xylella fastidiosa Ann-1]
gi|167964776|gb|ACA11786.1| ATPase [Xylella fastidiosa M12]
Length = 455
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 187/407 (45%), Positives = 253/407 (62%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQ LL+P+ L AV S + S+I WGPPG GKTTL+ + + +
Sbjct: 22 PLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGNVHSMILWGPPGCGKTTLSLLLAHYI 81
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK QQD+FLP IE
Sbjct: 82 DAEFRAV--SAVLSGLPEVRQILAEAAQ-RFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+F+GATTENPSF L + LLSRCRV L + D+ + L+RA+ D GL GG
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQDTERGL----GG 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++EV+ ++ + DGD R AL LEI+A A + EDE
Sbjct: 195 QKIEVSEASLLEIAKAADGDVRRALTLLEIAAELA------------QDEDEQ------- 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + +D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P+
Sbjct: 236 --ITADLLSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPI 293
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A + A+ + LG PE ++ AQ V YLA KS +
Sbjct: 294 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLASTAKSNAG 353
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A++ IR++ Q+ VPLHLRNAPT+LMK +GYG Y Y D
Sbjct: 354 YVAFNVAKEDIRQTGTQD--VPLHLRNAPTRLMKSLGYGIEYQYDHD 398
>gi|398996922|ref|ZP_10699764.1| AAA ATPase [Pseudomonas sp. GM21]
gi|398125610|gb|EJM15080.1| AAA ATPase [Pseudomonas sp. GM21]
Length = 440
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 266/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L S DGD R LN LE ++ A ED S+
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSE------ 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D + +D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG PL
Sbjct: 225 --IGVDLLQSLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
+LE F
Sbjct: 401 EALEPQPF 408
>gi|206891135|ref|YP_002249330.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743073|gb|ACI22130.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 414
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 181/425 (42%), Positives = 265/425 (62%), Gaps = 28/425 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RM P N+++ VGQ H++S LLR A+ S+++ S+I +GPPGTGKT LA+ I N
Sbjct: 16 PLAYRMAPRNLDEYVGQSHIISEGKLLRRAIDSDKITSLILYGPPGTGKTALARIIANKT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+++ L+A T ++++R V A++ R+ ++T+LF+DE+HR N+ QD+ LP IE
Sbjct: 76 KAYFQW--LNATTLNIEEIRKQVSLAKQ-RLSRGEKTILFIDEIHRLNRISQDALLPDIE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G+I+ IGAT ENP F+L + LLSR V L PL ++ +LKRA+ D G G
Sbjct: 133 EGTIILIGATIENPFFYLNSALLSRSHVFELKPLTEQEIITILKRAIVDTERGF----GS 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+VE+ +A+ L + DGDAR AL+ALEI+ +T E + +G V
Sbjct: 189 LKVEITSEALSHLAKSSDGDARKALSALEIAVLTT--------------EPDKEG----V 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ + A+E+ Q KH+ YDRAG+EHY+ SA KSMRG+D DA +YWLA+M+ GE P
Sbjct: 231 IRIDIKVAEESIQKKHIVYDRAGDEHYDTASAFIKSMRGSDPDATVYWLAKMIYAGEDPR 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR++ ASEDVG ADP+AL A S +A +GMPE +IL+ Y+ALAPKS +
Sbjct: 291 FIARRIIIAASEDVGNADPMALILATSAARAVEIVGMPEAKIILSHAAIYVALAPKSNAC 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DPSAKQSFLPPS 541
YRA+ A K + + + VP HL++A K++G+GKGY Y D +Q++LP
Sbjct: 351 YRAIEEALKDVEKE--RTFAVPEHLKDAHYPGAKKLGHGKGYKYPHDYGGYVEQNYLPEK 408
Query: 542 LEGYK 546
+ YK
Sbjct: 409 KKYYK 413
>gi|325919437|ref|ZP_08181463.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
gi|325550103|gb|EGD20931.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
Length = 457
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 191/407 (46%), Positives = 248/407 (60%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQ LL+P+S LR AV S R+ S+I WGPPG GKTTLA + +
Sbjct: 24 PLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYS 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+K +SAV SG+ +VR + +A + R S +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 84 DAEFK--AISAVLSGLPEVRQVLAEAAQ-RFASGRRTVLFVDEVHRFNKAQQDAFLPHIE 140
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D GL +
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALHDSERGLGQET-- 198
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++V ++ + S DGD R AL LEI+A A E +P
Sbjct: 199 --IQVTDASLLEIASAADGDVRRALTLLEIAAELAT--------------GEGGEITPQT 242
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P
Sbjct: 243 LLQVLADRTRRF-------DKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPA 295
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YLA KS +
Sbjct: 296 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAG 355
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A+ +R + Q VPLHLRNAPTKLMK +GYG+ Y Y D
Sbjct: 356 YAAFNQAKAEVRATGTQE--VPLHLRNAPTKLMKTLGYGQDYQYDHD 400
>gi|152978774|ref|YP_001344403.1| recombination factor protein RarA [Actinobacillus succinogenes
130Z]
gi|150840497|gb|ABR74468.1| AAA ATPase central domain protein [Actinobacillus succinogenes
130Z]
Length = 447
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 270/428 (63%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ GQ HL+ LR A+ S S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPRTLDEYCGQQHLIGQGKPLRRAIESGHAHSMILWGPPGTGKTTLAEII--AY 72
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ + LSAVTSGVKD+R+A+E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 73 RINAEVERLSAVTSGVKDIREAIERAKRNRL-ADRQTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L L DV+ +L++AV D GL K+
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRTRVYILKSLTTADVQRVLQQAVADEERGLGKA--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + + L +GDAR+ALN LE+ A A E++ +G
Sbjct: 189 -RLNLQANLLHLLAEYVNGDARLALNCLELMADMA--------------EEDENGKKIDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLLT-----EVLGERQARFDKGGDRFYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDIGNADPRAMQVALSAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y+A AA+ + +++ + VP HL NAPT+L+KE+G Y Y D+P +A +++ P
Sbjct: 349 YQAFNAAKALAKQAPDYD--VPRHLTNAPTQLLKELGNHAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
L+ +F
Sbjct: 407 EPLKDTRF 414
>gi|410663188|ref|YP_006915559.1| ATPase, AAA family domain-containing protein [Simiduia agarivorans
SA1 = DSM 21679]
gi|409025545|gb|AFU97829.1| ATPase, AAA family domain-containing protein [Simiduia agarivorans
SA1 = DSM 21679]
Length = 449
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/445 (42%), Positives = 264/445 (59%), Gaps = 45/445 (10%)
Query: 110 DVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGT 169
DV +TA PL+ R+RP + VGQ HLL L+ + S ++ S+IFWGPPG
Sbjct: 7 DVQHSTAWQ----PLAARVRPQELAHYVGQSHLLGQGKPLQKVLASGQVHSMIFWGPPGV 62
Query: 170 GKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229
GKTTLA+ + + V +F LSAV +GVKD+R VE A++LRV +N + +LFVDEVHRF
Sbjct: 63 GKTTLAQLLAHRVDA--RFFSLSAVMAGVKDIRSLVEQAKQLRVTNNTKALLFVDEVHRF 120
Query: 230 NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
NKSQQD+FLP IEDG+ +F+GATTENPSF L LLSRCRV L L D+ L+ +
Sbjct: 121 NKSQQDAFLPYIEDGTFIFVGATTENPSFELNNALLSRCRVYVLKSLNDQDLSELIDHCL 180
Query: 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA----ITAAVRVPVKE 345
+ + ++++ DA + L DGDAR LN LEI++ R+
Sbjct: 181 ------ANPAAALPAIKLDADARDLLIRAADGDARRLLNLLEIASDLVDAETDFRLSAAI 234
Query: 346 VKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD 405
V E+ Q+D +D+ G+ Y+ ISA+HK++RG+ D
Sbjct: 235 VDEIVQQDVR------------------------RFDKGGDHFYDQISAMHKAVRGSSPD 270
Query: 406 AAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVI 465
A+YW ARML+GG PLY+ARR+VR ASED+G ADP AL+ A+S + LG PE +
Sbjct: 271 GALYWFARMLDGGCDPLYVARRVVRMASEDIGNADPRALDIALSAWDVQTRLGSPEGELA 330
Query: 466 LAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYI 525
+AQ +AYLA APKS ++Y A ++ + VP+HLRNAPTKLM E+G+G Y
Sbjct: 331 IAQALAYLASAPKSNAVYSAFKQVMADVKADPSFD--VPVHLRNAPTKLMNELGHGAEYR 388
Query: 526 YTPDDP---SAKQSFLPPSLEGYKF 547
Y D+P +A +++LP ++ ++
Sbjct: 389 YAHDEPDAYAAGENYLPEAIANRRY 413
>gi|304311214|ref|YP_003810812.1| hypothetical protein HDN1F_15770 [gamma proteobacterium HdN1]
gi|301796947|emb|CBL45160.1| Uncharacterized ATPase related to the helicase subunit of the
Holliday junction resolvase [gamma proteobacterium HdN1]
Length = 467
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 255/428 (59%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + + GQ+HLL N LR A+ + S+I WGPPG GKTTLA + N +
Sbjct: 14 PLAARMRPLTLEEYAGQEHLLGANGSLRKALELGQAHSMILWGPPGVGKTTLAMLMANYI 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F+ LSAV SGVK++R A+++AR R + ++ +LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 EA--QFITLSAVLSGVKEIRAAIDEARHYR-QQGRQCLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++F+GATTENPSF L LLSR RV L PL + L+ A+ D ++ + G
Sbjct: 131 DGTVIFVGATTENPSFELNGALLSRARVYVLKPLDASAITARLRSAMQD-----ARGLAG 185
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +E + DGD R A N LEI+ A E+DG
Sbjct: 186 AGIRAEDAILETIARAADGDMRRAYNLLEIATSLA----------------EADGADQ-- 227
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
VT +A +D+ G++ Y+ ISALHK++RG+ D A+YW ARML+GG PL
Sbjct: 228 --VTEAILSQAVGEGGRRFDKHGDQFYDQISALHKAVRGSSPDGALYWFARMLDGGCDPL 285
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASED+G ADP AL A++ + LG PE + +AQ + +LA A KS ++
Sbjct: 286 YIARRVVRMASEDIGNADPRALTLALNAWDVQERLGSPEGELAIAQAIVFLASAAKSNAV 345
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQS---FLP 539
YRA + V+ + G + VP HLRNAPTKLMK GYG Y Y D P S +LP
Sbjct: 346 YRAFKEVKAVV--ASGGSLDVPFHLRNAPTKLMKAQGYGDDYRYAHDFPEGYASGECYLP 403
Query: 540 PSLEGYKF 547
+L G ++
Sbjct: 404 EALVGQEW 411
>gi|378697836|ref|YP_005179794.1| recombination protein [Haemophilus influenzae 10810]
gi|301170352|emb|CBW29958.1| recombination protein [Haemophilus influenzae 10810]
Length = 446
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 268/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V ++ +E E+
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLEL-------------VVDMAEETENGKKIDRT 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 235 LL------KEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YL++APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLSVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|334144071|ref|YP_004537227.1| AAA ATPase central domain-containing protein [Thioalkalimicrobium
cyclicum ALM1]
gi|333964982|gb|AEG31748.1| AAA ATPase central domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 445
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 193/414 (46%), Positives = 255/414 (61%), Gaps = 30/414 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP + D VGQ HL++P + A+ L S+IFWGPPGTGKT+LA+ I
Sbjct: 8 YQPLAERLRPQCLTDFVGQSHLVAPGRAIERALAQQHLHSMIFWGPPGTGKTSLARLIAQ 67
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ LSAV GVK+VR AVE A+ R + + +LFVDEVHRFNK+QQD+FLP
Sbjct: 68 QS--NRLFLALSAVLDGVKEVRKAVEQAQAERELTGQPALLFVDEVHRFNKAQQDAFLPY 125
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+++FIGATTENPSF L LLSR RV L+PL D+ L+ RAVD + L
Sbjct: 126 VEDGTVIFIGATTENPSFELNRALLSRARVYVLDPLTQADLLPLIDRAVDLLAIDL---- 181
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + + DA +L + +GDAR LNALE I A P V + +D C
Sbjct: 182 -GQGIILEDDAKTWLLNAAEGDARRLLNALE-QVIDFAENTPAGLVVK------ADICRK 233
Query: 361 YVALVTLDDAKEAFQCKHLA-YDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+A + LA +D+ G+ Y+ ISALHKS+RG+D AA+YWL RML GG
Sbjct: 234 VIA-------------RGLAGFDKQGDAFYDQISALHKSIRGSDPQAALYWLTRMLAGGA 280
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
P Y+ARRL+R ASE++G ADP AL+ A+ QA LG PE ++ LAQ YLA+APKS
Sbjct: 281 DPRYLARRLIRMASEEIGNADPRALSTAIDAAQAYERLGSPEGDLALAQAATYLAVAPKS 340
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
++Y A A +++ VP HLRNAPT+LMK++ G GY Y D+P A
Sbjct: 341 NAVYVAYNQALSCAKQTGALP--VPKHLRNAPTELMKQLDVGAGYRYAHDEPDA 392
>gi|408388051|gb|EKJ67746.1| hypothetical protein FPSE_12117 [Fusarium pseudograminearum CS3096]
Length = 553
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 266/430 (61%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++V GQD L+ P +LRS + S+++PS+I WG GTGKTT+A+ I +
Sbjct: 139 APLAERMRPRTLDEVCGQD-LVGPTGVLRSLIESSQVPSMILWGASGTGKTTIARCIAH- 196
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A ++GV + + ++A + ++T++F DE+HRFNK+QQD FL +
Sbjct: 197 -MVGSRFIELNATSTGVSECKKYFQEATNDLALTGRKTIIFCDEIHRFNKAQQDVFLKPV 255
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + + LLSRCR TL L DV +L+RA+ + +SV
Sbjct: 256 EAGTVTLIGATTENPSFKVASALLSRCRTFTLRSLTTEDVVRILQRAIKE-----EESVY 310
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ + +L DGDAR ALN LE++ + +G
Sbjct: 311 PSTPLLDEAMVTYLARFADGDARTALNLLELALSLT----------------KREG---- 350
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T +D K A K L YDRAG++HY+ ISA HKS+RGNDADAA+Y+LARML+ GE P
Sbjct: 351 ---ITQEDIKAAL-TKTLVYDRAGDQHYDTISAFHKSVRGNDADAALYYLARMLQSGEDP 406
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C L APKS
Sbjct: 407 LFIARRMVVIASEDVGLADNTLLPLATATYTATQQIGMPEARIPLAHCAVALCNAPKSTK 466
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YRAL A +RE VPLHLRNAPT+LM+++GYG Y Y P+ + KQ++LP
Sbjct: 467 AYRALNNAYAALREPGVAGLPVPLHLRNAPTRLMRDMGYGAEYKYPPNYREGRVKQTYLP 526
Query: 540 PSLEGYKFLD 549
L G +F++
Sbjct: 527 DELLGRRFVE 536
>gi|419839186|ref|ZP_14362604.1| recombination factor protein RarA [Haemophilus haemolyticus HK386]
gi|386909897|gb|EIJ74561.1| recombination factor protein RarA [Haemophilus haemolyticus HK386]
Length = 427
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 264/423 (62%), Gaps = 31/423 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP ++ GQ HL+ + LR A+ + + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 1 MRPTSLEQYFGQTHLIGEDKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRINAEVE 60
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
+ SAVTSG+K++R+A+E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IEDG+++
Sbjct: 61 RI--SAVTSGIKEIREAIEHAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVI 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K R+ +
Sbjct: 118 FIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE----RLIL 173
Query: 308 NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367
+ ++ L +GDAR+ALN LE+ V+ DE++ +
Sbjct: 174 EENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK----IDR 214
Query: 368 DDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427
KE + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PLY+ARR
Sbjct: 215 TLLKEVLGERQARFDKQGDRFYDFISALHKSVRGSAPDAALYWYARILTAGGDPLYVARR 274
Query: 428 LVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487
L+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++Y A
Sbjct: 275 LLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFN 334
Query: 488 AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEG 544
A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++ PP L+
Sbjct: 335 TAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKD 392
Query: 545 YKF 547
++
Sbjct: 393 TQY 395
>gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM
9941]
gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941]
Length = 429
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 201/424 (47%), Positives = 260/424 (61%), Gaps = 44/424 (10%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ER+RP ++++VVGQ HL LR A R+ S+I WGPPGTGKTTLA+ +
Sbjct: 15 RAPLAERLRPRSLDEVVGQPHLAGEGGPLREAAERGRVGSVILWGPPGTGKTTLARVLAA 74
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
SV +FV LSAVTSGV+D+R A++ AR+ + T+LFVDEVHRFNK+QQD+ LP
Sbjct: 75 SV--EEEFVPLSAVTSGVRDLRAALDGARERLKYEGRGTLLFVDEVHRFNKAQQDALLPA 132
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G + FIGATTENPSF + PLLSR RVL L PL D+E LL+R + ++ G+S
Sbjct: 133 LEEGLVDFIGATTENPSFEVTAPLLSRSRVLRLRPLSKGDLEALLERGLSELGVGISG-- 190
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+A ++L GDAR LNALE++A + V V E+
Sbjct: 191 ---------EARDYLLRLAGGDARRMLNALEVAA-SGRREVGVAEI-------------- 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ A + L Y R EEHY+++SA KS+RG D DAA+++LARM+E GE
Sbjct: 227 ----------ERALGQRALRYGR--EEHYDVVSAFIKSVRGGDPDAALHYLARMIEAGED 274
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P++IARRLV ASEDVG ADP AL AV+ +A +GMPE + LAQ AYLA APKS
Sbjct: 275 PVFIARRLVILASEDVGNADPRALPLAVAAAEAVRMVGMPEGRIPLAQAAAYLASAPKSN 334
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDD--PSAKQSFL 538
+ Y + A +R G VPLHLRNAPT LM+E GYG+GY Y DD Q +L
Sbjct: 335 AAYAGIDEALADVRR--GATPEVPLHLRNAPTGLMREEGYGEGYRYAHDDEPEGMNQRYL 392
Query: 539 PPSL 542
P L
Sbjct: 393 PEEL 396
>gi|325298651|ref|YP_004258568.1| AAA ATPase [Bacteroides salanitronis DSM 18170]
gi|324318204|gb|ADY36095.1| AAA ATPase central domain protein [Bacteroides salanitronis DSM
18170]
Length = 424
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 257/427 (60%), Gaps = 34/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++D +GQ HL+ ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 4 PLAERMRPKTLDDYIGQKHLVGEGAVLRRMIDAGRISSFILWGPPGVGKTTLAQIIANRL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
V F LSAVTSGVK+VRD +E AR R S++ +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 EVP--FYTLSAVTSGVKEVRDVIEKARNGRFFSSQSPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL+ ++ +++ L K
Sbjct: 122 TGVVTLIGATTENPSFEVIRPLLSRCQLYVLKPLE-------KDDLLELLHHALEKDSIL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + GDAR LN LE+ E+D P V
Sbjct: 175 KEKHIELEETDAMLRYSGGDARKLLNILELVV-------------------EADDSEPVV 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + E Q LAYD+ GE HY++ISA KS+RG+D D A+YWLARM+EGGE P
Sbjct: 216 --ITDEKVVERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGALYWLARMVEGGEDPA 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 274 FIARRLVISASEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y + AA + +R++ N VPLHLRNAPTKLMK++GY + Y Y D D Q FLP
Sbjct: 334 YMGINAALETVRDT--GNLPVPLHLRNAPTKLMKQLGYARNYKYAHDYKDHFVVQQFLPD 391
Query: 541 SLEGYKF 547
++ +F
Sbjct: 392 GIQAQRF 398
>gi|220915883|ref|YP_002491187.1| recombination factor protein RarA [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953737|gb|ACL64121.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 437
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 192/397 (48%), Positives = 252/397 (63%), Gaps = 36/397 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D GQ+H+L P + LR ++ ++++PS+I WGPPGTGKTTLA+ +
Sbjct: 16 PLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPPGTGKTTLARIVAQRT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
FV SAV GVK++R+ V AR R KRT+LFVDE+HRF ++QQD+FLP +E
Sbjct: 76 GAD--FVPFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I IGATTENPSF + LLSRCRV TL L +V LL RAV GL+ +V
Sbjct: 134 DGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLDRAVA-APEGLAGAVA- 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + + GDAR ALNALE+SA AAVR+ + E
Sbjct: 192 ----LTPEARDTIARLSYGDARKALNALEVSA--AAVRLAGRPAVEKA------------ 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
DA+EA Q + + YD+ GEEHYN++SA KS+RG+D DAA+Y++ RMLE GE P
Sbjct: 234 ------DAEEALQARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPR 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ RR+V FASEDVG ADP AL AVS QA +G+PE + ++Q YLALAPKS +
Sbjct: 288 FVLRRMVIFASEDVGNADPQALQVAVSALQAVELVGLPEGVLPMSQAAIYLALAPKSNTA 347
Query: 483 YRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMK 516
A G A++++RE G VPL LRNAPTKLM+
Sbjct: 348 IAAYGNARRLVRE-----RGPLPVPLKLRNAPTKLME 379
>gi|90021340|ref|YP_527167.1| recombination factor protein RarA [Saccharophagus degradans 2-40]
gi|89950940|gb|ABD80955.1| Recombination protein MgsA / PAS/PAC sensor signal transduction
histidine kinase [Saccharophagus degradans 2-40]
Length = 444
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 187/426 (43%), Positives = 248/426 (58%), Gaps = 33/426 (7%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ RMRP + + +GQ HLL LR A+ ++ S+I WGPPG GKT+LA+ + N
Sbjct: 13 HQPLAARMRPRTLKEYMGQTHLLGKGKPLRLALERGQIHSMILWGPPGVGKTSLARLLAN 72
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ +SAV SGVK++R AV +A + R + TVLFVDEVHRFNKSQQD+FLP
Sbjct: 73 EI--QGHFIAISAVLSGVKEIRAAVAEAEQQRNMYGRTTVLFVDEVHRFNKSQQDAFLPY 130
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG++VF+GATTENPSF + LLSRCRV L D+ LL+ A+ D GL
Sbjct: 131 VEDGTVVFVGATTENPSFEVNNALLSRCRVYVLKGFTQQDLTELLQSALADTKRGL---- 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + V D L DGDAR LN LEI++ E C
Sbjct: 187 GARELNVAEDGANLLIQAADGDARRLLNLLEIASDLV----------------EDGEC-- 228
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ LD + +D+ G+ Y ISALHKS+RG+D AA+YW ARML+GG
Sbjct: 229 ----IDLDILTQVVTGDFRRFDKGGDIFYEQISALHKSVRGSDPHAALYWFARMLDGGCD 284
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP L A S + LG PE + +A + YLA APKS
Sbjct: 285 PLYIARRVVRMASEDIGNADPRGLAIATSAWDVFTRLGSPEGELAIAHAIVYLAAAPKSN 344
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A ++ S + VP HLRNAPT +MK++G+G+GY Y + +A +++
Sbjct: 345 AVYNAFNAVMADVKSS--PSHPVPNHLRNAPTGMMKDLGFGEGYRYAHSEEGGFAAGENY 402
Query: 538 LPPSLE 543
P LE
Sbjct: 403 FPDELE 408
>gi|307728952|ref|YP_003906176.1| AAA ATPase [Burkholderia sp. CCGE1003]
gi|307583487|gb|ADN56885.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
Length = 437
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 260/423 (61%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S + S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGQAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAQFIALSAVLSGVKDIREAVETAQVHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L ++ LL RA +GG
Sbjct: 127 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLDEDELRELLARA--------QHELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A A+ ++ E DG
Sbjct: 179 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAASQ----------QKTTEIDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL E + +D+ G+ Y+ ISALHKS+RG+ D A+YW RML+GG P
Sbjct: 227 ALA------ENLRR----FDKGGDAFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + S ++ GVP+HLRNAPT+LMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFV--SKDKSRGVPVHLRNAPTRLMKELGYGHEYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
++
Sbjct: 395 DNM 397
>gi|148547066|ref|YP_001267168.1| recombination factor protein RarA [Pseudomonas putida F1]
gi|395448380|ref|YP_006388633.1| recombination factor protein RarA [Pseudomonas putida ND6]
gi|421520331|ref|ZP_15966997.1| recombination factor protein RarA [Pseudomonas putida LS46]
gi|148511124|gb|ABQ77984.1| Recombination protein MgsA [Pseudomonas putida F1]
gi|388562377|gb|AFK71518.1| recombination factor protein RarA [Pseudomonas putida ND6]
gi|402755885|gb|EJX16353.1| recombination factor protein RarA [Pseudomonas putida LS46]
Length = 441
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 260/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + ++ +G
Sbjct: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ARGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V DA + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 EMLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYVGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPDELE 404
>gi|384135858|ref|YP_005518572.1| AAA ATPase [Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339289943|gb|AEJ44053.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 447
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 264/424 (62%), Gaps = 27/424 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++++VG +L+ + +LR + +RL SII +GPPGTGKT +A+ +
Sbjct: 16 APLAYRMRPRSLDEMVGHQNLVGRDGILRRMIERDRLMSIILYGPPGTGKTAIAEVVARH 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+F+ L+AVTSG+ DVR AVE AR+ R +RTV+F+DE+HRFNKSQQD+ LP +
Sbjct: 76 TKA--RFIPLNAVTSGIADVRKAVEIAREERDLYGRRTVVFLDEIHRFNKSQQDALLPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G + +GATTENP F + LLSR V L PL P D+ L+ A+ D GL G
Sbjct: 134 EAGLLSLVGATTENPYFDVNAALLSRSHVFRLEPLSPDDIGRLVDMAIADEERGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
RV ++ DA L GDAR ALN LE++A A V DG +
Sbjct: 190 RMRVRLHPDARRVLTLQARGDARRALNLLELAAFAARV--------------GPDGATE- 234
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ + ++ A EA YDRAG++HY+ ISA KS+RG+D +AA+ WLA+MLEGGE P
Sbjct: 235 IGMREVEVALEASGGPR--YDRAGDDHYDTISAFIKSVRGSDVNAAMLWLAKMLEGGEDP 292
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRL+ A+EDVG+ADP AL AVS +QA +GMPE ++LA+ AYLA APKS S
Sbjct: 293 AFIARRLMILAAEDVGMADPNALPIAVSGWQAAMAIGMPEARIVLAEVTAYLAKAPKSNS 352
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
YRA+ A + +R + VPLHLR+ K K +G+G+GY+Y D P +Q++ P
Sbjct: 353 AYRAINLAMEDVRSGLPLE--VPLHLRSTAYKGAKALGHGEGYLYPHDYPGHYVEQNYWP 410
Query: 540 PSLE 543
+E
Sbjct: 411 IGVE 414
>gi|281208871|gb|EFA83046.1| putative helicase [Polysphondylium pallidum PN500]
Length = 758
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 186/443 (41%), Positives = 263/443 (59%), Gaps = 35/443 (7%)
Query: 115 TALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTL 174
+AL PLSE+MRP++++ +GQ+ LL+ S+ + S PS I WGPPG+GKTT+
Sbjct: 292 SALFKKGIPLSEKMRPLSLDFFIGQEELLN-GSMFYEMIKSGAPPSFILWGPPGSGKTTI 350
Query: 175 AKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDA-RKLRVKSNKRTVLFVDEVHRFNKSQ 233
AK + + S FV LSAV SGV D++ V A + ++T+LF+DE+HRF KSQ
Sbjct: 351 AKLVEKNT--SSHFVMLSAVHSGVADMKQVVTQAIARESGLLKQKTILFIDEIHRFTKSQ 408
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
QD LP +E+G+ IGATTENPSF + LLSRCRV L L ++ +LKRA+D
Sbjct: 409 QDFLLPYVENGTFTLIGATTENPSFEVNGALLSRCRVFKLQKLSQQHIQTILKRAIDSYC 468
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
SK ++ V+ ++ L S DGDAR ALN +E+ ++ + + +E
Sbjct: 469 KYTSK-----KITVDEQGLDSLSSFSDGDARTALNVIEM-----VIKGTPGDTIHISKEK 518
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
S E Q K +D+ GE HYN+ISALHKS+RG+DA+A+ YWL R
Sbjct: 519 LS----------------ELTQTKTFLHDKKGESHYNMISALHKSVRGSDANASTYWLTR 562
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
MLE G +PL+IARR++R ASED+GLADPLA+ V+ +QA F+GMPE + L Q YL
Sbjct: 563 MLESGTEPLFIARRMIRMASEDIGLADPLAMGITVAAFQAVQFVGMPEAALSLLQAAVYL 622
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYT---PDD 530
A APKS S+ A ++ + + Q+ VPLH+ NAPT LM ++GY +GY Y +
Sbjct: 623 AQAPKSNSLELAYMKTREFLLSN--QSPPVPLHICNAPTDLMSKLGYAQGYQYNHAYENQ 680
Query: 531 PSAKQSFLPPSLEGYKFLDWPKS 553
Q++LP S+ F + ++
Sbjct: 681 SEVTQTYLPESIANEVFFQYKQT 703
>gi|406989568|gb|EKE09339.1| hypothetical protein ACD_16C00192G0021 [uncultured bacterium]
Length = 422
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 256/422 (60%), Gaps = 45/422 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL E++RP+N+NDVVGQ HL+ L + +L S+IFWGPPG+GKT+LA +
Sbjct: 7 PLPEQLRPLNLNDVVGQQHLIGEGKPLTRFIEKKQLYSMIFWGPPGSGKTSLAHILAQ-- 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A FV LSA+ SGV +++ E A+ + T+LFVDE+HRFN++QQDSFLP +E
Sbjct: 65 ACHMPFVSLSAIFSGVGELKKIFEKAQN-TFEEGHSTLLFVDEIHRFNRAQQDSFLPYVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I IGATTENPSF L LLSRC+V L+ L D+E +++RA + + L
Sbjct: 124 KGIITLIGATTENPSFELNGALLSRCQVFRLHRLSAEDLEEIIRRAEVYLKHPLP----- 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A FL DGD R+ LN +E+ + E K ++ D + +
Sbjct: 179 ----LAEEARAFLIEMADGDGRMLLNFIEV----------ISEEKSIKPFDSKE-----L 219
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+++ A YD++ E HYNLISA HKS+RG+D DAA+YW ARMLEGGE PL
Sbjct: 220 SILLTKRAP--------LYDKSQEGHYNLISAFHKSLRGSDPDAALYWFARMLEGGEDPL 271
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YI RR++RFASED+GLADP AL Q ++ +A LG PE + L Q + YLA APKS ++
Sbjct: 272 YIGRRMIRFASEDIGLADPQALVQVLAGVEAYERLGSPEGELALVQALVYLATAPKSNAL 331
Query: 483 YRALGAAQKVIRESVGQNEGV---PLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSF 537
YRA K ++E+ Q+ G P H+ NAPTKLMK GYGKGYIY D P + QS+
Sbjct: 332 YRAF---PKALKEA--QSSGSLMPPQHILNAPTKLMKSEGYGKGYIYDHDTPEGFSGQSY 386
Query: 538 LP 539
P
Sbjct: 387 FP 388
>gi|168701195|ref|ZP_02733472.1| recombination factor protein RarA [Gemmata obscuriglobus UQM 2246]
Length = 449
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 189/426 (44%), Positives = 254/426 (59%), Gaps = 25/426 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++ VGQ H L+P LLR + ++RL S+IF+GPPG GKT LA I
Sbjct: 17 PLAARMRPRTLDEYVGQTHFLAPGKLLRRMLLADRLNSLIFYGPPGCGKTALAHVIAKHT 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+K L+AV +G KDVR+ + +AR + +RT+LF+DE+HRFN++QQD LP +E
Sbjct: 77 KSRFK--PLNAVAAGTKDVRELLAEARGHLEELGERTILFLDEIHRFNRAQQDVLLPDVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG I+ IGATT+NP F + TPLLSR ++ PL DV LL RAV D GL K
Sbjct: 135 DGVIILIGATTQNPFFAINTPLLSRSQIFRFEPLSRDDVRTLLLRAVSDTERGLGK---- 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V + DA+ FL CDGDAR AL ALEI ++ K +
Sbjct: 191 LNVTITDDALAFLVEVCDGDARRALTALEIGVKSSLAPENAKAASSIR------------ 238
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+ A+++ Q K + +D G+ HY+ SA KS+RG+D DAA+YW+ARMLEGGE P
Sbjct: 239 --FDLELAQDSIQQKVIEFDPTGDTHYDTASAFIKSLRGSDPDAALYWMARMLEGGEDPR 296
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARRLV FASEDVG ADP + A + + A +G+PEC + LA V YLA A KS +
Sbjct: 297 FVARRLVIFASEDVGNADPFGVVLANAAWDAVEKVGLPECRINLAHAVTYLATAQKSNAS 356
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEI-GYGKGYIYTPDDPSA--KQSFLP 539
Y A AA K ++E G+ VPLHLR+ + KE+ G+G GY Y D +Q ++P
Sbjct: 357 YMAGEAAAKDVKE--GRTLPVPLHLRDKGYRGAKEVFGHGVGYKYAHDFEGGWVEQEYIP 414
Query: 540 PSLEGY 545
E Y
Sbjct: 415 TDAEYY 420
>gi|407924889|gb|EKG17914.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 542
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 193/462 (41%), Positives = 269/462 (58%), Gaps = 45/462 (9%)
Query: 90 KEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLL 149
K +D PSP +L V APL+ERMRP +++V GQ+ L+ P+ ++
Sbjct: 102 KAEDEPSPPSPKRSKLNALQKV----------APLAERMRPRTLDEVCGQE-LVGPDGVI 150
Query: 150 RSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDAR 209
R + +R+PS+I WG PGTGKTT+A+ I ++ +FV +++ +SGV + + +AR
Sbjct: 151 RGLIEQDRVPSMILWGGPGTGKTTIARLIAHTAGC--RFVEINSTSSGVAECKKLFAEAR 208
Query: 210 KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCR 269
+ ++T++F DE+HRF+KSQQD FL +E G + IGATTENPSF ++ LLSRCR
Sbjct: 209 NELGLTGRKTIIFCDEIHRFSKSQQDVFLGPVEAGQVTLIGATTENPSFKVVNALLSRCR 268
Query: 270 VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNA 329
TL+ L V +L RA++ ++ ++ + +L + DGDAR ALN
Sbjct: 269 TFTLSKLSEETVTTILHRALEREAPAADPTL------IDSSLLRYLAAFADGDARTALNL 322
Query: 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHY 389
LE++ + T DA + + L YDRAG++HY
Sbjct: 323 LELALDLS------------------------TRPATTQDAIKRSLTQTLVYDRAGDQHY 358
Query: 390 NLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVS 449
+ ISA HKS+RG+D DA++Y+LARML+ GE PLY+ARRL+ ASEDVGLAD L+ A +
Sbjct: 359 DTISAFHKSIRGSDPDASLYYLARMLQSGEDPLYVARRLIVVASEDVGLADNAMLSLATA 418
Query: 450 CYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRN 509
Y AC +GMPEC + LA LALAPKS YRAL A ++E VP+HLRN
Sbjct: 419 AYSACEKIGMPECRINLAHATVALALAPKSTRAYRALCNAMDALQEPGVAGLPVPVHLRN 478
Query: 510 APTKLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
APT+LMKE+GYGK Y Y PD D Q +LP L G FL+
Sbjct: 479 APTRLMKELGYGKEYKYNPDYLDGRVVQDYLPEKLLGRTFLE 520
>gi|386834632|ref|YP_006239949.1| AAA ATPase [Pasteurella multocida subsp. multocida str. 3480]
gi|385201335|gb|AFI46190.1| ATPase, AAA family [Pasteurella multocida subsp. multocida str.
3480]
Length = 445
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 263/428 (61%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIARQI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E A++ R+ + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 HADVERI--SAVTSGIKEIREAIERAKENRLAA-RRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR +V L L ++ +LK+A+ D GL G
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLDEERGL----GK 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R + + +E L +GDAR+ALN+LE+ A A +E+D
Sbjct: 188 VRFVLEENVLECLAEYVNGDARLALNSLELMADMA---------------EETDAGKA-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TL K + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --LTLSLLKNVLGERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+ PKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVTPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
YRA A++ ++E+ + VP HLRNAPT LMK +GYG+ Y Y D+ +A +++ P
Sbjct: 349 YRAFNQAKQHVKET--PDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFP 406
Query: 540 PSLEGYKF 547
+L+ ++
Sbjct: 407 EALKDTQY 414
>gi|224539375|ref|ZP_03679914.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus
DSM 14838]
gi|423224875|ref|ZP_17211343.1| hypothetical protein HMPREF1062_03529 [Bacteroides cellulosilyticus
CL02T12C19]
gi|224519010|gb|EEF88115.1| hypothetical protein BACCELL_04280 [Bacteroides cellulosilyticus
DSM 14838]
gi|392634171|gb|EIY28097.1| hypothetical protein HMPREF1062_03529 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 425
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 195/429 (45%), Positives = 261/429 (60%), Gaps = 34/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNRFFSQGSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ ++ L +
Sbjct: 121 QGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQRAIT-TDHILKERT-- 177
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ S GDAR LN L++ S+ P V
Sbjct: 178 --IELKETTAMLRYSG--GDARKLLNILDLVV-------------------SSEAGDPVV 214
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+E GE P
Sbjct: 215 --ITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEAGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV ASEDVGLA+P AL A +C+ A +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISASEDVGLANPNALLIANACFDAVMKVGWPEGRIPLAEATVYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y A+ A +++R++ N VPLHLRNAPTKLMK++GYG Y Y D P KQ FLP
Sbjct: 333 YMAINNALELVRQT--GNLPVPLHLRNAPTKLMKQLGYGDNYKYAHDYPGHFVKQQFLPD 390
Query: 541 SLEGYKFLD 549
L+ + +
Sbjct: 391 ELKDRRLWE 399
>gi|197121182|ref|YP_002133133.1| recombination factor protein RarA [Anaeromyxobacter sp. K]
gi|196171031|gb|ACG72004.1| AAA ATPase central domain protein [Anaeromyxobacter sp. K]
Length = 437
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 192/397 (48%), Positives = 252/397 (63%), Gaps = 36/397 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D GQ+H+L P + LR ++ ++++PS+I WGPPGTGKTTLA+ +
Sbjct: 16 PLAERMRPRRLEDFAGQEHVLGPGTALRRSIEADQVPSLILWGPPGTGKTTLARIVAQRT 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
FV SAV GVK++R+ V AR R KRT+LFVDE+HRF ++QQD+FLP +E
Sbjct: 76 GAD--FVPFSAVLGGVKEIREIVAAARDRRRMHRKRTILFVDEIHRFTRAQQDAFLPHVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I IGATTENPSF + LLSRCRV TL L +V LL RAV GL+ +V
Sbjct: 134 DGTITLIGATTENPSFEVNAALLSRCRVATLRALTEDEVAALLDRAVA-APEGLAGAVA- 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + + GDAR ALNALE+SA AAVR+ + E
Sbjct: 192 ----LTPEARDTIARLSYGDARKALNALEVSA--AAVRLAGRPAVEKA------------ 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
DA+EA Q + + YD+ GEEHYN++SA KS+RG+D DAA+Y++ RMLE GE P
Sbjct: 234 ------DAEEALQARTVNYDKQGEEHYNVVSAFIKSLRGSDPDAAVYYMVRMLEAGEDPR 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ RR+V FASEDVG ADP AL AVS QA +G+PE + ++Q YLALAPKS +
Sbjct: 288 FVLRRMVIFASEDVGNADPQALQVAVSALQAVELVGLPEGVLPMSQAAIYLALAPKSNTA 347
Query: 483 YRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMK 516
A G A++++RE G VPL LRNAPTKLM+
Sbjct: 348 IAAYGNARRLVRE-----RGPLPVPLKLRNAPTKLME 379
>gi|398880428|ref|ZP_10635476.1| AAA ATPase [Pseudomonas sp. GM67]
gi|398884267|ref|ZP_10639207.1| AAA ATPase [Pseudomonas sp. GM60]
gi|398192778|gb|EJM79910.1| AAA ATPase [Pseudomonas sp. GM67]
gi|398195121|gb|EJM82175.1| AAA ATPase [Pseudomonas sp. GM60]
Length = 440
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 265/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAANLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L S DGD R LN LE ++ A ED S+
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSE------ 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D + +D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG PL
Sbjct: 225 --IGVDLLQSLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMGFKAAMRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE F
Sbjct: 401 EELEPQPF 408
>gi|423348625|ref|ZP_17326307.1| hypothetical protein HMPREF1060_03979 [Parabacteroides merdae
CL03T12C32]
gi|409213408|gb|EKN06429.1| hypothetical protein HMPREF1060_03979 [Parabacteroides merdae
CL03T12C32]
Length = 426
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 193/424 (45%), Positives = 258/424 (60%), Gaps = 37/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+PS I WGPPG GKTTLA+ I N +
Sbjct: 5 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRVPSFILWGPPGVGKTTLAQIISNKL 64
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA++SGVKDVR+ +E A+ R + +LF+DE+HRF+KSQQDS L +E
Sbjct: 65 EAP--FYTLSAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQDSLLNAVE 122
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC+V L L+ D+ LL +AV + + + K +
Sbjct: 123 TGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLEKADLLTLLNKAVTE--DIILKDMNI 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
E + + GDAR LN LE+ + AA E+ +E
Sbjct: 181 VLAETDA-----MLRYSGGDARKLLNILEL--VVAA-----------EEGNEK------- 215
Query: 363 ALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ + D K E Q AYD+ GE HY++ISA KS+RG+D DAA+YWLARM+ GGE
Sbjct: 216 --IEITDEKVVERLQENPAAYDKGGEMHYDIISAFIKSIRGSDPDAAVYWLARMVAGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRLV ASED+GLA+P AL A +C+ A +G PE +ILA+ YLA PKS
Sbjct: 274 PEFIARRLVISASEDIGLANPNALLLANACFDALKKIGWPEGRIILAETTVYLACCPKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+ A +++ + N VPLHLRNAPTKLM E+ YGK Y Y D + KQ FL
Sbjct: 334 SAYMAINGALELVNRT--GNLPVPLHLRNAPTKLMAELNYGKDYKYAHDYENHFVKQEFL 391
Query: 539 PPSL 542
P +
Sbjct: 392 PKEI 395
>gi|386332786|ref|YP_006028955.1| replicatioN-associated recombination protein a [Ralstonia
solanacearum Po82]
gi|334195234|gb|AEG68419.1| replicatioN-associated recombination protein a [Ralstonia
solanacearum Po82]
Length = 448
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 197/429 (45%), Positives = 263/429 (61%), Gaps = 42/429 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP ++++V+GQ HLL P LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 12 HMPLAERLRPHSVDEVIGQRHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMAD 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A +F+ LSAV SGVKD+R+AVE A + R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 72 --AFDAEFIALSAVLSGVKDIREAVERAEQFRAH-GRRTLVFVDEVHRFNKSQQDAFLPH 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G FIGATTENPSF + LLSR V L L +++ L +RA + +
Sbjct: 129 VESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERA--------RQEL 180
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG +E A++ + ++ DGD R LN LEI +T A R + E D
Sbjct: 181 GG--LEWVPAALDAVVASADGDGRKLLNNLEI--VTRAARA----------QAEGD---- 222
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
A+ T+D+A A +D+ G+ Y+ ISALHKS+RG+D DAA+YW RML+GG
Sbjct: 223 --AVPTVDEALLASALSENLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGG 280
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARR+VR A ED+GLADP A + + LG PE + LAQ + YLA+APK
Sbjct: 281 ADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPEGELALAQALIYLAVAPK 340
Query: 479 SISIYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SA 533
S + Y A AA R VGQ++ VP+HLRNAPT+LMKE+GYG Y Y D+P +A
Sbjct: 341 SNAGYNAYNAA----RAFVGQDKSRPVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAA 396
Query: 534 KQSFLPPSL 542
+++ P L
Sbjct: 397 GETYFPDDL 405
>gi|71732523|gb|EAO34576.1| AAA ATPase, central region [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 455
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 187/407 (45%), Positives = 251/407 (61%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQ LL+P+ L AV S + S+I WGPPG GKTTL+ + + +
Sbjct: 22 PLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHYI 81
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK QQD+FLP IE
Sbjct: 82 DAEFRSV--SAVLSGLPEVRQILAEAAQ-RFSEGRRTVLFVDEVHRFNKMQQDAFLPHIE 138
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSI+F+GATTENPSF L + LLSRCRV L + D+ + L+RA+ D GL GG
Sbjct: 139 RGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQDTERGL----GG 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++EV+ + + DGD R AL LEI+A A + EDE
Sbjct: 195 QKIEVSEAYLLEIAKAADGDVRRALTLLEIAAELA------------QDEDEQ------- 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D + + +D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P+
Sbjct: 236 --ITADLLSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPI 293
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YLA KS +
Sbjct: 294 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAG 353
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A++ IR++ Q+ VPL LRNAPT+LMK +GYG GY Y D
Sbjct: 354 YVAFNVAKEDIRQTGTQD--VPLRLRNAPTRLMKSLGYGIGYQYDHD 398
>gi|123441839|ref|YP_001005822.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|420259027|ref|ZP_14761746.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|122088800|emb|CAL11606.1| putative ATPase protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|404513511|gb|EKA27327.1| recombination factor protein RarA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 447
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 264/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP+ + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPLTLEQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYG 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E ++ +A+ D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSDSSRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+++ + + GDAR ALN+LE+ A A + ++ G V
Sbjct: 188 QNIKLPDETRRMMSELVGGDARRALNSLEMMADMAEI--------------DASG----V 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISA+HKS+RG+ DAA+YW AR++ G PL
Sbjct: 230 RVLTPDLLKEVSGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDIGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPTKLMKE+G G Y Y D+ +A +++ P
Sbjct: 350 YSAFKAAMQDARDK--PDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMASTRY 415
>gi|380511168|ref|ZP_09854575.1| recombination factor protein RarA [Xanthomonas sacchari NCPPB 4393]
Length = 457
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 189/407 (46%), Positives = 248/407 (60%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++++VGQ LL+P S LR AV S R+ S+I WGPPG GKTTLA +
Sbjct: 24 PLAERMRPRTLDEMVGQKRLLAPTSALRRAVASGRVHSMILWGPPGCGKTTLALLLAQYA 83
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+K +SAV SG+ +VR + +A + R +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 84 EAEFK--AISAVLSGLPEVRGVLAEAAQ-RFADGRRTVLFVDEVHRFNKAQQDAFLPHIE 140
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I+F+GATTENPSF L + LLSRCRV L + P D+ L+RA+ D GL G
Sbjct: 141 RGTILFVGATTENPSFELNSALLSRCRVHVLEAVSPQDIAEALQRALHDPERGL----GA 196
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V+ A+ + DGD R AL LEI+A E+ Q++ + + +
Sbjct: 197 EPLRVSDAALLEIAGAADGDVRRALTLLEIAA-------------ELAQDEGGEITAQTL 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V D + +D+ GE+ Y+ ISALHKS+R ++ DAA+YWL RML+GG P
Sbjct: 244 QQVLADRTRR--------FDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPS 295
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP A + A+ + LG PE + AQ V YLA KS +
Sbjct: 296 YLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAG 355
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A A+ +RE+ Q VPLHLRNAPTKLMK +GYG Y Y D
Sbjct: 356 YAAFNQAKAEVRETGTQE--VPLHLRNAPTKLMKTLGYGADYQYDHD 400
>gi|50292021|ref|XP_448443.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527755|emb|CAG61404.1| unnamed protein product [Candida glabrata]
Length = 559
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 182/435 (41%), Positives = 263/435 (60%), Gaps = 35/435 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNS-LLRSAVCSNRLPSIIFWGPPGTGKTTLAKA 177
+ H PLSE++RP I D VGQ H+LS S +L V +PS+I WGPPG GKTTLA+
Sbjct: 113 ISHLPLSEKLRPKEIRDYVGQQHILSQESGVLNKYVQEGLVPSMILWGPPGVGKTTLARL 172
Query: 178 IVNSVAV---SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQ 234
+ + ++ Y V SA + +++R E RK + +R VLF+DE+HRFNK+QQ
Sbjct: 173 LTKTASLHGSRYTMVETSATKANAQELRSIFEKGRKEYQLTKRRVVLFIDEIHRFNKAQQ 232
Query: 235 DSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
D LP +E+G IV IGATTENPSF L L+SRC V L L +V I+L R V +N
Sbjct: 233 DLLLPHVENGDIVLIGATTENPSFQLNNALISRCHVFVLEKLSETEVIIILSRGVALLNK 292
Query: 295 GLSKSVGGTR--VEVNHDAIEFLCSNCDGDARVALNALEISAITA---AVRVPVKEVKEV 349
L + + ++++ + +LC GDAR ALN LE+ ++ + +++++E+
Sbjct: 293 -LRNVIWNVKNPLKLSRSILVYLCDISVGDARRALNLLEMIEVSTRHVEKELTIEQIREI 351
Query: 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409
+ + S G + Y YD G+ HY+ ISA HK++RG+D +A++Y
Sbjct: 352 IKNNNSQGLNTY-------------------YDTKGDNHYDTISAFHKAVRGSDENASLY 392
Query: 410 WLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQC 469
+L RML+GGE PLYIARR++R ASED+G+ D L A++ + A LG+PE ++ L QC
Sbjct: 393 YLGRMLQGGEDPLYIARRMIRIASEDIGIRDNSMLPLAIAAHDAVMKLGLPEADMALVQC 452
Query: 470 VAYLALAPKSISIYRALGAAQKVIRE---SVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY 526
LA APKS+ IYRA + ++ E ++ +E VP+H+RNAPT+LM+E+GY KGY Y
Sbjct: 453 CVSLARAPKSVEIYRAWKNLRGMLAENKYNLASSE-VPMHIRNAPTRLMEELGYHKGYKY 511
Query: 527 TPD--DPSAKQSFLP 539
PD D AKQ + P
Sbjct: 512 NPDYKDGIAKQDYFP 526
>gi|87122210|ref|ZP_01078093.1| putative ATPase [Marinomonas sp. MED121]
gi|86162530|gb|EAQ63812.1| putative ATPase [Marinomonas sp. MED121]
Length = 448
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 185/430 (43%), Positives = 263/430 (61%), Gaps = 30/430 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ RMRP ++D +GQ+HL+ L+ + + R S I WG PG GKTT AK + +
Sbjct: 12 YEPLAARMRPRQLSDYLGQEHLVGEGKPLKRMIETGRCHSFILWGAPGVGKTTFAKLLSH 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ LSAV SGVKD+R AVE A++ ++ + +TVLFVDEVHRFNKSQQD+FLP
Sbjct: 72 QLQA--HFLELSAVMSGVKDIRAAVEQAKQHKMMNAGQTVLFVDEVHRFNKSQQDAFLPF 129
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
IEDG+ +FIGATTENP+F L + LLSR RV +L + L+RA++D +G K
Sbjct: 130 IEDGTFLFIGATTENPAFELNSALLSRARVYSLKKPSQDIIRTGLERALNDSEHGYGKE- 188
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+++ I+ + DGD R +LN LE+ ++ ++V E +
Sbjct: 189 ---NIQIEARFIDAIAHAADGDVRRSLNLLEVLVDMSSQEGDFQQVTEAQ---------- 235
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+D ++++ A+D+ G+ Y+ ISA HKS+RG+ AD A+YW+ARML+GG
Sbjct: 236 -----LIDVLGQSYR----AFDKGGDAFYDQISAFHKSVRGSSADGALYWMARMLDGGCD 286
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARRL+ ASEDVG ADP AL A++ + H +G E N +AQ YLA APKS
Sbjct: 287 PLYIARRLLAIASEDVGNADPRALQIALNAWDVFHRVGPGEGNRAIAQAAVYLACAPKSN 346
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A + + + VP HLRNAPTKL KE+G+G+ Y Y ++ +A +S+
Sbjct: 347 AVYLAFNQAMSSVADQPSYD--VPNHLRNAPTKLAKEMGHGEDYRYAHNEDNAFAAGESY 404
Query: 538 LPPSLEGYKF 547
LPP LEG+ F
Sbjct: 405 LPPELEGHTF 414
>gi|331004982|ref|ZP_08328392.1| putative ATPase associated with chromosome architecture [gamma
proteobacterium IMCC1989]
gi|330421224|gb|EGG95480.1| putative ATPase associated with chromosome architecture [gamma
proteobacterium IMCC1989]
Length = 466
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 189/441 (42%), Positives = 263/441 (59%), Gaps = 38/441 (8%)
Query: 105 LKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFW 164
+ + + +D+T + +P L+ R+RP I D +GQ HLL+ LR A+ +L S+I W
Sbjct: 15 MPSNNSIDNTNSAQMP---LAARLRPQTIQDYIGQQHLLAEGKPLREAIEKGQLHSMILW 71
Query: 165 GPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVD 224
GPPG GKT+LA+ + + + Y LSAV +GVKD+R AV A+ + S +RT+LFVD
Sbjct: 72 GPPGVGKTSLARMLAHLIDAEY--TSLSAVLAGVKDIRQAVATAQLTQQTSGRRTLLFVD 129
Query: 225 EVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284
EVHRFNK+QQD+FLP +E+G+I FIGATTENPSF L LLSRCRV L L D+ L
Sbjct: 130 EVHRFNKAQQDAFLPYVENGTITFIGATTENPSFELNNALLSRCRVYVLRRLGDDDIIQL 189
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVK 344
L RA++D + GL G + + D I L S +GDAR ALN LEI++ A + ++
Sbjct: 190 LHRALNDSDKGL----GQKELHCSEDVINILASAANGDARRALNLLEIASDLAEQNITLE 245
Query: 345 EVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDA 404
V E+ D +D+ G+ Y ISALHKS+RG+
Sbjct: 246 IVAEILGGDVR------------------------RFDKGGDIFYEQISALHKSVRGSSP 281
Query: 405 DAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464
DAA+YW RML+GG PLY+ARR+VR A ED+G ADP AL +++ + LG PE +
Sbjct: 282 DAALYWCMRMLDGGCDPLYVARRIVRMAIEDIGNADPRALTISLAAWDTQERLGSPEGEL 341
Query: 465 ILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
+AQ V YLA APKS ++Y A + I + + VPLHLRNAPT LMK++ YG+ Y
Sbjct: 342 AIAQAVVYLASAPKSNAVYNAFNTVKVDI--AAMPDYDVPLHLRNAPTTLMKDLQYGEEY 399
Query: 525 IYTPDDP---SAKQSFLPPSL 542
Y ++ +A +++ P +
Sbjct: 400 RYAHNEEGAYAAGENYFPKDI 420
>gi|78188604|ref|YP_378942.1| recombination factor protein RarA [Chlorobium chlorochromatii CaD3]
gi|78170803|gb|ABB27899.1| Recombination protein MgsA [Chlorobium chlorochromatii CaD3]
Length = 453
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 262/423 (61%), Gaps = 33/423 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++V GQ HL+ N+ LR + S ++PS+IFWG PG GKTTLA+ +++
Sbjct: 32 PLAERVRPRMLDEVAGQQHLVGANAPLRRFLESGQMPSVIFWGAPGCGKTTLAEICASTL 91
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAV +GVK+VR A++ A ++R ++ +R +LF+DE+HRFNKSQQD+ L +E
Sbjct: 92 QC--HFEQLSAVDAGVKEVRKALDIATRVR-QAGQRCLLFIDEIHRFNKSQQDTLLHALE 148
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G I+ IGATTENPSF + LLSR +V TL PL ++E +++RA+ +S+
Sbjct: 149 QGLILLIGATTENPSFEVNGALLSRMQVYTLKPLTAEELEQVIRRALATDALFRERSIEL 208
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+EV L C GDAR ALNA+E A P +
Sbjct: 209 ADLEV-------LWHYCAGDARKALNAIE----AAFALFPTNQSS--------------- 242
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T + + A Q K YD++GE HY++ISA KSMRG+D DAA++WLARM+EGGE
Sbjct: 243 VQLTREHFEAALQQKAPLYDKSGENHYDVISAFIKSMRGSDPDAALFWLARMIEGGEDAK 302
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+V FASEDVG ADP AL A+S +QA +G+PE + LAQ V YLA APKS +
Sbjct: 303 FIARRMVIFASEDVGNADPYALTLALSVFQAVSVIGLPEARINLAQGVTYLASAPKSNAS 362
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y+A+ A ++ + VPLHLRNAPTK MK GYG GY Y + PS +Q + P
Sbjct: 363 YQAINEAMAEVKSTTATT--VPLHLRNAPTKFMKNEGYGAGYCYPHNYPSHFVEQHYFPE 420
Query: 541 SLE 543
+E
Sbjct: 421 GME 423
>gi|386361368|ref|YP_006059613.1| AAA ATPase [Thermus thermophilus JL-18]
gi|383510395|gb|AFH39827.1| AAA ATPase [Thermus thermophilus JL-18]
Length = 421
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 189/429 (44%), Positives = 256/429 (59%), Gaps = 44/429 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++V+GQ HL P LLR + + RL S++ +GPPGTGKTTLA+ + V
Sbjct: 6 PLAERLRPRTLDEVLGQPHLTGPKGLLRRMLEARRLSSMVLFGPPGTGKTTLARLLAEGV 65
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F+ LSAV +G+K+VR AVE+AR + VLF+DE+HRFNK+QQD+ LP +E
Sbjct: 66 --GRPFLRLSAVEAGLKEVRQAVEEAR-----AKGGLVLFLDEIHRFNKAQQDALLPHLE 118
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGAT ENP+F L+ L SR R+L + PL D+ LLKRA++D + + G
Sbjct: 119 SGLLTLIGATAENPAFALVPALRSRLRLLPVRPLGEEDLLALLKRALED-----PRGLPG 173
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T E +A+ L GDAR ALN LE++A
Sbjct: 174 TPYE--EEALRVLAQAAGGDARFALNTLELAA--------------------------SF 205
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
V L +EA + DR G+ Y+L+SALHKS+RG+ DAA+Y+LAR+L+GG P
Sbjct: 206 GRVDLGSVREALGAERFGMDREGDRFYDLVSALHKSLRGSHVDAALYYLARLLQGGADPR 265
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+R A+EDVGLADPLAL AV+ +A LG PE + L + YLALAPKS S+
Sbjct: 266 YLARRLIRVAAEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEATVYLALAPKSNSL 325
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP--SAKQSFLPP 540
Y A AQ+ + VPL+LRNAPT L + +G+G+GY Y +D S Q +LP
Sbjct: 326 YAAWKRAQEAAKAH--PEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPE 383
Query: 541 SLEGYKFLD 549
LEG +
Sbjct: 384 GLEGLTLFE 392
>gi|386402206|ref|ZP_10086984.1| AAA ATPase [Bradyrhizobium sp. WSM1253]
gi|385742832|gb|EIG63028.1| AAA ATPase [Bradyrhizobium sp. WSM1253]
Length = 444
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 194/434 (44%), Positives = 260/434 (59%), Gaps = 39/434 (8%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
PH PL +R+RP +++VVGQDH+L P+ L + + L S++FWGPPGTGKTT+A+ +
Sbjct: 23 PH-PLPDRLRPRALSEVVGQDHILGPDGALTRMLETRTLGSLVFWGPPGTGKTTVARLLA 81
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+ A F +SAV SGV D++ A E AR R + K T+LFVDEVHRFN++QQDSFLP
Sbjct: 82 D--ATDLHFEQISAVFSGVADLKKAFEAARARR-EMGKGTLLFVDEVHRFNRAQQDSFLP 138
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
V+EDG++V +GATTENPSF L LLSR RVL L +E L A +
Sbjct: 139 VMEDGTVVMVGATTENPSFELNAALLSRARVLVFRSLDAAAIEKLFAHA---------EE 189
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
V G ++ ++ +A L DGD R +L +E EV ++DE
Sbjct: 190 VEGRKLPLDEEARAVLVRMADGDGRASLTLVE-------------EVWRAARKDE----- 231
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+ +E Q + YD++ + HYNLISALHKS+RG+D DAA+Y+LARML+ GE
Sbjct: 232 ----IFDAAQLQEILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLARMLDAGE 287
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PL++ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V YLA APKS
Sbjct: 288 DPLFLARRVVRMAVEDIGLADPQALVIANAAKDAFDFLGHPEGELAIAQAVVYLATAPKS 347
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSF 537
++Y A G A +V +++ + P H+ N+PTKLMK GYG Y Y D P A Q +
Sbjct: 348 NAVYTAFGKAMQVAKQA--GSLLPPKHILNSPTKLMKSEGYGASYEYDHDAPDAFSGQDY 405
Query: 538 LPPSLEGYKFLDWP 551
P +L F D P
Sbjct: 406 FPDALGRQTFYDPP 419
>gi|407692175|ref|YP_006816964.1| recombination factor protein RarA [Actinobacillus suis H91-0380]
gi|407388232|gb|AFU18725.1| recombination factor protein RarA [Actinobacillus suis H91-0380]
Length = 446
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 261/428 (60%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL RMRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I +
Sbjct: 14 PLPARMRPRTLAEYIGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHF 73
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 74 DAEVE--RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIE 130
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR R+ L PL+ ++ +L+ A+ D GL G
Sbjct: 131 DGTIIFIGATTENPSFELNNALLSRARIYILKPLQAVEIHQILQNALLDKERGL----GN 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ D + L +GD R ALN LE+ + A + K + +
Sbjct: 187 ESFVLEDDVLTLLADYVNGDGRYALNCLELMSDMAEQGIHGKILNKT------------- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+LISALHKS+RG+ D A+YW AR+L G PL
Sbjct: 234 -LLT-----EVLGERQARFDKGGDRFYDLISALHKSVRGSSPDGALYWYARILTAGGDPL 287
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 288 YVARRLLAIASEDIGNADPRAMQIAINAWDCYTRVGAYEGERAIAQAIIYLAVAPKSNAV 347
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A+++ +E+ ++ VP HLRNAPTKLMK +GYG Y Y +P +A +++ P
Sbjct: 348 YNAFNEAKQLAKEA--KDYDVPEHLRNAPTKLMKSLGYGAEYRYAHHEPNAYAAGENYFP 405
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 406 PELKDTQF 413
>gi|307247443|ref|ZP_07529489.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306856059|gb|EFM88216.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 428
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 187/423 (44%), Positives = 260/423 (61%), Gaps = 31/423 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 1 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVE 60
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IEDG+I+
Sbjct: 61 --RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTII 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G +
Sbjct: 118 FIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GNESYYI 173
Query: 308 NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367
+ IE L +GDAR ALN LE+ + A + K + + AL+
Sbjct: 174 EDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNK--------------ALLA- 218
Query: 368 DDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427
E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PLY+ARR
Sbjct: 219 ----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARR 274
Query: 428 LVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487
L+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++Y A
Sbjct: 275 LLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAVYNAFN 334
Query: 488 AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEG 544
A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ PP L+
Sbjct: 335 EAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFPPELKD 392
Query: 545 YKF 547
F
Sbjct: 393 TVF 395
>gi|46117090|ref|XP_384563.1| hypothetical protein FG04387.1 [Gibberella zeae PH-1]
Length = 1226
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/430 (44%), Positives = 266/430 (61%), Gaps = 34/430 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ERMRP +++V GQD L+ P +LRS + S+++PS+I WG GTGKTT+A+ I +
Sbjct: 812 APLAERMRPRTLDEVCGQD-LVGPTGVLRSLIESSQVPSMILWGASGTGKTTIARCIAH- 869
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
V +F+ L+A ++GV + + ++A + ++T++F DE+HRFNK+QQD FL +
Sbjct: 870 -MVGSRFIELNATSTGVSECKKYFQEATNDLALTGRKTIIFCDEIHRFNKAQQDVFLKPV 928
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G++ IGATTENPSF + + LLSRCR TL L DV +L+RA+ + +SV
Sbjct: 929 EAGTVTLIGATTENPSFKVASALLSRCRTFTLRSLTTEDVVRILQRAIKE-----EESVF 983
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ ++ + +L DGDAR ALN LE++ + +G
Sbjct: 984 PSTPLLDEAMVTYLARFADGDARTALNLLELALSLT----------------KREG---- 1023
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+T +D K A K L YDRAG++HY+ ISA HKS+RGNDADAA+Y+LARML+ GE P
Sbjct: 1024 ---ITQEDIKAAL-TKTLVYDRAGDQHYDTISAFHKSVRGNDADAALYYLARMLQSGEDP 1079
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
L+IARR+V ASEDVGLAD L A + Y A +GMPE + LA C L APKS
Sbjct: 1080 LFIARRMVVIASEDVGLADNTLLPLATATYTATQQIGMPEARIPLAHCAVALCNAPKSTK 1139
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLP 539
YRAL A +RE VPLHLRNAPT+LM+++GYG Y Y P+ + KQ++LP
Sbjct: 1140 AYRALNNAYAALREPGVAGLPVPLHLRNAPTRLMRDMGYGAEYKYPPNYREGRVKQTYLP 1199
Query: 540 PSLEGYKFLD 549
L G +F++
Sbjct: 1200 DELLGRRFVE 1209
>gi|26990707|ref|NP_746132.1| recombination factor protein RarA [Pseudomonas putida KT2440]
gi|386011403|ref|YP_005929680.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1]
gi|24985700|gb|AAN69596.1|AE016593_4 ATPase, AAA family [Pseudomonas putida KT2440]
gi|313498109|gb|ADR59475.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1]
Length = 441
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 259/427 (60%), Gaps = 40/427 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ +
Sbjct: 12 PLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQFC 71
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++ V SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 72 DAHFETV--SAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V DA + L + DGD R LN LE ++ A DG V
Sbjct: 185 RNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLA-----------------EDGSEIDV 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ L D++ F D+ GE Y+ ISALHKS+RG++ D A+YW ARML+GG
Sbjct: 228 EMLQSLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL+ ++ + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQS 536
++Y A +RE+ VPLHLRNAPTKLMK++GYG Y Y D+P +A +
Sbjct: 341 AVYVGFKTA---LREAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGED 397
Query: 537 FLPPSLE 543
+ P LE
Sbjct: 398 YFPDELE 404
>gi|429215940|ref|ZP_19207099.1| recombination factor protein RarA [Pseudomonas sp. M1]
gi|428153593|gb|EKX00147.1| recombination factor protein RarA [Pseudomonas sp. M1]
Length = 441
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 264/430 (61%), Gaps = 38/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLAK ++ V
Sbjct: 12 PLAARLRATSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAK-LLAQV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV SGVK++R +VE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETISAVLSGVKEIRQSVEMAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVQRALSE-----DKGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ L + DGD R LN LE ++ A DG
Sbjct: 185 RHLSLPEESFAILMAAADGDGRRLLNLLENASDLA-----------------EDGGEISA 227
Query: 363 ALVT--LDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
L+ L D++ F D+ GE Y+ ISALHKS+RG+ D A+YW ARML+GG
Sbjct: 228 ELLQNLLGDSRRRF-------DKGGEAFYDQISALHKSVRGSSPDGALYWYARMLDGGCD 280
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP AL + + LG PE + +AQ + YLA APKS
Sbjct: 281 PLYIARRVVRMASEDIGNADPRALTLCLHAWDVQERLGSPEGELAIAQAIVYLACAPKSN 340
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A++ + E+ G E VPLHLRNAPTKLMK +GYG+ Y Y D+P +A + +
Sbjct: 341 AVYNAYNTARRDVAEN-GSLE-VPLHLRNAPTKLMKNLGYGEEYRYAHDEPDAYAAGEDY 398
Query: 538 LPPSLEGYKF 547
P LE ++
Sbjct: 399 FPEQLEPRQY 408
>gi|422008048|ref|ZP_16355033.1| recombination factor protein RarA [Providencia rettgeri Dmel1]
gi|414096183|gb|EKT57842.1| recombination factor protein RarA [Providencia rettgeri Dmel1]
Length = 447
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 192/429 (44%), Positives = 267/429 (62%), Gaps = 32/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I N
Sbjct: 15 PLAARMRPETLEQYIGQKHLLAEGKPLPRAIKAGHLHSMILWGPPGTGKTTLAEIIGNYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+++E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADIERI--SAVTSGIKEIRESIEKARQNR-SAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L+ +D+E +L +A+ D + GL GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLEENDIEQVLLQALADSSRGL----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR +LN LE+ A A E+DG +
Sbjct: 188 QNIVLPDSTRKMVAQLVNGDARRSLNLLEMMADMA----------------EADGQGQRI 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T D KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 --LTADLLKEVSGERTARFDNKGDRYYDLISALHKSIRGSAPDAALYWFARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQ-NEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
Y A AA I+++ Q + VP HLRNAPTKL+KE+G GK Y Y D+P +A +++
Sbjct: 350 YTAYKAA---IKDAQMQPDYDVPEHLRNAPTKLLKEMGAGKEYRYAHDEPNAYAAGENYF 406
Query: 539 PPSLEGYKF 547
P ++ ++
Sbjct: 407 PEPMQTTRY 415
>gi|254480362|ref|ZP_05093609.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148]
gi|214038945|gb|EEB79605.1| ATPase, AAA family protein [marine gamma proteobacterium HTCC2148]
Length = 442
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 187/430 (43%), Positives = 262/430 (60%), Gaps = 40/430 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ R+RP ++ GQ HLL+P LR ++ +L S+IFWGPPG GKTTLA+
Sbjct: 18 YQPLAARLRPADLQSYAGQSHLLAPGKPLRESIDRRQLHSMIFWGPPGVGKTTLARIAAE 77
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F+ +SAV SGVK++R+A+ AR+ + S + TVLFVDEVHRFNKSQQD+FLP
Sbjct: 78 AADA--HFLQISAVLSGVKEIREAIAQARQHK-SSGRDTVLFVDEVHRFNKSQQDAFLPY 134
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+EDG+++F+GATTENPSF L LLSR RV L L+ ++ +LKR +D++
Sbjct: 135 VEDGTVIFVGATTENPSFELNNALLSRTRVYKLRSLEISELVGVLKRGMDEL-------- 186
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + + +E + + DGDAR ++N LE++A A DG
Sbjct: 187 -GDAAQASQHCLELIATQADGDARRSINLLELAADLA-----------------DDGE-- 226
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+T +E Q +D+ G+ Y+ ISALHK++RG+ AD A+YW RML+GG
Sbjct: 227 ----ITEQTLEEVLQASLRRFDKGGDLFYDQISALHKAVRGSSADGALYWFCRMLDGGCD 282
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASEDVG ADP AL+ ++ +Q LG PE + +AQ + YLA A KS
Sbjct: 283 PLYIARRVVRMASEDVGNADPRALSISLDAWQVQERLGSPEGELAVAQAIIYLACAAKSN 342
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSF 537
++Y A A VI G + VPLHL+NAPT LMK++ YG Y Y D+ +A +S+
Sbjct: 343 AVYNAYNQAVAVI--GAGDSHEVPLHLKNAPTSLMKDMDYGAEYRYAHDEEGGYAAGESY 400
Query: 538 LPPSLEGYKF 547
LP +L+ +F
Sbjct: 401 LPEALKDQQF 410
>gi|410092665|ref|ZP_11289186.1| recombination factor protein RarA [Pseudomonas viridiflava
UASWS0038]
gi|409759984|gb|EKN45154.1| recombination factor protein RarA [Pseudomonas viridiflava
UASWS0038]
Length = 440
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 191/424 (45%), Positives = 267/424 (62%), Gaps = 34/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLAHGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDETALRKLVHRALTE-----DRGLGQ 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ +N + L + DGD R LN LE ++ A ED S+ + +
Sbjct: 185 RQLTLNDEGFAILMAAADGDGRRMLNLLENASDLA--------------EDGSEIGTELL 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ L D++ F D+ GE Y+ ISALHKS+RG++ DAA+YW ARM++GG PL
Sbjct: 231 QSL-LGDSRRRF-------DKGGEAFYDQISALHKSIRGSNPDAALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL +S + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALPLCMSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A +A + E G E VPLHLRNAPTKLMK++GYG+ Y Y D+P +A + + P
Sbjct: 343 YMAFKSAMREASEH-GSLE-VPLHLRNAPTKLMKQLGYGEEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLE 543
LE
Sbjct: 401 DELE 404
>gi|307256490|ref|ZP_07538271.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864900|gb|EFM96802.1| Replication-associated recombination protein A [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 428
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 187/423 (44%), Positives = 260/423 (61%), Gaps = 31/423 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK 187
MRP + + +GQ HL+ LR A+ + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 1 MRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVE 60
Query: 188 FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247
LSAVTSGVK++R+A+E A KL ++ +RT+LFVDEVHRFNKSQQD+FLP IEDG+I+
Sbjct: 61 --RLSAVTSGVKEIREAIERA-KLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTII 117
Query: 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV 307
FIGATTENPSF L LLSR ++ L PL+ ++ +L A+ D GL G +
Sbjct: 118 FIGATTENPSFELNNALLSRAKIYILKPLQAVEIAQVLTNALYDKERGL----GNESYYI 173
Query: 308 NHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367
+ IE L +GDAR ALN LE+ + A + K + + AL+
Sbjct: 174 EDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNK--------------ALLA- 218
Query: 368 DDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427
E + +D+ G+ +Y+LISALHKS+RG+ D A+YW AR+L G PLY+ARR
Sbjct: 219 ----EVLGERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARR 274
Query: 428 LVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487
L+ ASED+G ADP A+ A++ + +G E +AQ V YLA+APKS ++Y A
Sbjct: 275 LLAIASEDIGNADPRAMQVAINAWDCYTRVGAYEGERAIAQAVIYLAVAPKSNAVYNAFN 334
Query: 488 AAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEG 544
A+++ +E G++ VP HLRNAPTKLMK +GYG+ Y Y +P +A +++ PP L+
Sbjct: 335 EAKRLAKE--GKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAGENYFPPELKD 392
Query: 545 YKF 547
F
Sbjct: 393 TVF 395
>gi|262196587|ref|YP_003267796.1| AAA ATPase [Haliangium ochraceum DSM 14365]
gi|262079934|gb|ACY15903.1| AAA ATPase central domain protein [Haliangium ochraceum DSM 14365]
Length = 463
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/435 (43%), Positives = 262/435 (60%), Gaps = 23/435 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP ++ + VGQ+HLL P LL LPS+I WGPPGTGKTTLA +
Sbjct: 16 PLAERMRPKSLQEFVGQNHLLGPRKLLARLGPGAALPSLILWGPPGTGKTTLAHILATRA 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ +SAVT+GV+++R V +A R + RTVLF+DE+HRF+K+QQD+ LP +E
Sbjct: 76 --GSRLAAISAVTAGVREMRQLVSEAGDRRDQFGSRTVLFIDEIHRFSKAQQDALLPHVE 133
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++ IGATTENPSFH+ LLSRCRVL L L ++ L +RA+ D GL ++
Sbjct: 134 AGTVTLIGATTENPSFHVNAALLSRCRVLRLGALSDEELGALARRALSDRERGLGRAA-- 191
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
V V+ + + L + GDAR LNALE++ V V+ E E E + +P
Sbjct: 192 --VSVSDEVLTDLVAQSGGDARRMLNALEVA---------VSLVRGGEGEGEDEDEAPRA 240
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ + +EA Q K L YD+AG+EH+ ++SA KSMRG+D DAA YW+ RMLE GE PL
Sbjct: 241 --LGREAIEEALQQKTLLYDKAGDEHFGVVSAFIKSMRGSDPDAAAYWMTRMLEAGEDPL 298
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ RR+V FASED+G ADP AL A S A FLGMPE + + Q Y+A APKS +
Sbjct: 299 FVLRRMVVFASEDIGNADPQALAVATSALSAYQFLGMPEGVLPMTQAAVYMACAPKSNTA 358
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK---QSFLP 539
AA++ +R+ VP LRNA L +E+G+ K Y Y P + + +++LP
Sbjct: 359 LTTYAAARRAVRQHGALP--VPKKLRNANNALDREMGHAKDYRY-PHNFAGHYVPETYLP 415
Query: 540 PSLEGYKFLDWPKSN 554
LEG +F + +S
Sbjct: 416 EGLEGARFYEPAESG 430
>gi|268315897|ref|YP_003289616.1| AAA ATPase [Rhodothermus marinus DSM 4252]
gi|262333431|gb|ACY47228.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252]
Length = 458
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 191/431 (44%), Positives = 268/431 (62%), Gaps = 30/431 (6%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
APL+ERMRP +++ VGQ+H+L P LLR A+ ++RL S+IF+GPPGTGKTTLA+ I
Sbjct: 16 QAPLAERMRPRTLDEFVGQEHILGPGKLLRRAIEADRLSSLIFYGPPGTGKTTLARIIAR 75
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F L+AV +GVKD+RDA+E A++ +RT+LF+DEVHRFNK+QQD+ LP
Sbjct: 76 TSRA--HFTALNAVLAGVKDIRDAIEAAQERLRLHQQRTILFIDEVHRFNKAQQDALLPH 133
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E+G+++FIGATTENP F +I PL+SR RV L PL P + + ++A+ D G
Sbjct: 134 VENGTVIFIGATTENPYFEVIKPLVSRSRVFELKPLTPEHLRRIAEQALADPERG----Y 189
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G V V+ +A++ L +GDAR LNALE++ E D S
Sbjct: 190 GRRNVVVDPEALDHLIDVANGDARSLLNALELAV-------------ETTPPDASGRIH- 235
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+TL A+E+ Q + + YD+ G+ H++ ISA KS+RG+D DAA+YWLARM+ GE
Sbjct: 236 ----ITLPVAEESIQRRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMIYAGED 291
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +I RR++ FA+EDVGLADP AL A + QA ++GMPE ILA+C YLA APKS
Sbjct: 292 PRFILRRMLIFAAEDVGLADPRALQVAAAAAQAFDYVGMPEGQFILAECCLYLATAPKSN 351
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
S A V RE G VP HL++A ++ + +G+G+GY Y + Q +L
Sbjct: 352 STMAYFNALAYVEREQSGD---VPTHLKDA-SRDRQGLGHGQGYKYPHAYREHYVPQQYL 407
Query: 539 PPSLEGYKFLD 549
P ++G F +
Sbjct: 408 PEHMQGTYFYE 418
>gi|393783814|ref|ZP_10371985.1| hypothetical protein HMPREF1071_02853 [Bacteroides salyersiae
CL02T12C01]
gi|392668256|gb|EIY61757.1| hypothetical protein HMPREF1071_02853 [Bacteroides salyersiae
CL02T12C01]
Length = 425
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 197/444 (44%), Positives = 267/444 (60%), Gaps = 47/444 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKDDLLELLQRAI------------A 168
Query: 303 TRVEVNHDAIEFLCSNC-----DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
T + IE +N GDAR LN LE+ V E E E+
Sbjct: 169 TDAVLKERQIELRETNAMLRFSGGDARKLLNILEL-------------VVESEAEE---- 211
Query: 358 CSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EG
Sbjct: 212 ----TVVITDDMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEG 267
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P +IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +P
Sbjct: 268 GEDPAFIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSP 327
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQ 535
KS S Y A+ A ++RE+ + VPLHLRNAPTKLMK++GYG+ Y Y + + KQ
Sbjct: 328 KSNSAYSAINDALALVRET--GSLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQ 385
Query: 536 SFLPPSLEGYKFLDW-PKSNTTDK 558
FLP L+ + W P+ N ++
Sbjct: 386 QFLPDELKNKRI--WQPQHNPAEQ 407
>gi|212691432|ref|ZP_03299560.1| hypothetical protein BACDOR_00924 [Bacteroides dorei DSM 17855]
gi|345513114|ref|ZP_08792637.1| recombination factor protein RarA [Bacteroides dorei 5_1_36/D4]
gi|423240306|ref|ZP_17221421.1| hypothetical protein HMPREF1065_02044 [Bacteroides dorei
CL03T12C01]
gi|212666042|gb|EEB26614.1| ATPase, AAA family [Bacteroides dorei DSM 17855]
gi|229434806|gb|EEO44883.1| recombination factor protein RarA [Bacteroides dorei 5_1_36/D4]
gi|392644407|gb|EIY38146.1| hypothetical protein HMPREF1065_02044 [Bacteroides dorei
CL03T12C01]
Length = 425
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/438 (43%), Positives = 262/438 (59%), Gaps = 36/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 4 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E AR R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L + + ++ ++N ++K V
Sbjct: 122 TGVVTLIGATTENPSFEVIRPLLSRCQLYVLK-------SLEKEDLLELLHNAIAKDVIL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + GDAR LN LE+ V + D G
Sbjct: 175 KEKKIELKETDAMLRFSGGDARKLLNILEL----------------VVEADADAGT---- 214
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D A+YWLARM+E GE P
Sbjct: 215 IVITDEKVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGALYWLARMVEAGEDPA 274
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 275 FIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSA 334
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPP 540
Y + +A +++R++ N VPLHLRNAPTKLMK++GYGK Y Y +Q FLP
Sbjct: 335 YEGINSALELVRQT--GNLPVPLHLRNAPTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPD 392
Query: 541 SLEGYKFLDW-PKSNTTD 557
++G + W P++N +
Sbjct: 393 EVKGSRI--WHPQNNAQE 408
>gi|384098731|ref|ZP_09999844.1| recombination factor protein RarA [Imtechella halotolerans K1]
gi|383835174|gb|EID74602.1| recombination factor protein RarA [Imtechella halotolerans K1]
Length = 425
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 186/432 (43%), Positives = 263/432 (60%), Gaps = 35/432 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP +++D V Q HL+ LR+ + +PS+I WGPPGTGKTTLA I N
Sbjct: 2 NEPLAERIRPKSLDDYVSQQHLVGETGSLRNQIKKGLIPSLILWGPPGTGKTTLANIIAN 61
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F LSA++SGVK+VR+ ++ A++ + ++K +LF+DE+HRF+KSQQDS L
Sbjct: 62 ES--DRPFYTLSAISSGVKEVREVIDKAKQSGGLFTSKNPILFIDEIHRFSKSQQDSLLA 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF +I LLSRC+V LN D+E LL RA+ SK+
Sbjct: 120 AVEKGWVTLIGATTENPSFEVIPALLSRCQVYILNSFGKEDLEALLHRALIKDKWLQSKN 179
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ E L GD R LN E+ I +A +ESD
Sbjct: 180 IQLKETEA-------LLRLSGGDGRKLLNIFEL--IVSA--------------EESD--- 213
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
+T + + Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 214 --TVFITDEKVMQRVQKNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARR++ ASED+G A+P AL A + +QA +G PE ++L+QC YLA +PKS
Sbjct: 272 DVKFIARRMLILASEDIGNANPTALIMANNTFQAVSTIGYPESRILLSQCAIYLATSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSF 537
+ Y A+ AQ+++R++ + VPLHLRNAPTKLMKE+GYG Y Y + ++ +Q F
Sbjct: 332 NASYTAINEAQQLVRQT--GDLSVPLHLRNAPTKLMKELGYGDEYKYAHSYENNFTQQDF 389
Query: 538 LPPSLEGYKFLD 549
LP S++G K D
Sbjct: 390 LPESIKGTKLYD 401
>gi|149918222|ref|ZP_01906714.1| AAA ATPase [Plesiocystis pacifica SIR-1]
gi|149820982|gb|EDM80389.1| AAA ATPase [Plesiocystis pacifica SIR-1]
Length = 513
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/431 (45%), Positives = 261/431 (60%), Gaps = 30/431 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ VGQ+HL P LLR V S+R+PS+IFWGPPGTGKTTLA+ I +
Sbjct: 21 PLAERMRPRDLDGYVGQEHLTGPGRLLRRVVESDRIPSMIFWGPPGTGKTTLARIIASRT 80
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSA +GVKD+R AVE AR+ R + T+LFVDE+HRFNK+QQD+ LP +E
Sbjct: 81 GA--HFDTLSATDAGVKDLRKAVERARERRDYQGRATLLFVDEIHRFNKAQQDALLPHVE 138
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G IGATTENPSF + LLSR RV+ L L + +L+ A++ GL G
Sbjct: 139 AGVCTLIGATTENPSFEVNAALLSRARVVQLRALGIPQLVDILRAALEHDERGL----GR 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+V+ + + + GDAR ALN+LE++ V V + + D +G
Sbjct: 195 RQVQASDRLLGAIALASQGDARRALNSLELA---------VDLVPDADP-DAGEGEEGTA 244
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++ + EA HL YDR GEEHYN+ SA KSMR +D DAA+YW+ARMLE GE
Sbjct: 245 RELSPELVAEALGQSHLRYDRDGEEHYNIASAFIKSMRASDPDAAVYWMARMLEAGEPLE 304
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
++ARRLV FA+EDVG A+P A+ A SC A F+GMPE + L+Q +L+LAPKS +
Sbjct: 305 FVARRLVIFAAEDVGNAEPQAIVVAQSCADAARFVGMPEAVLPLSQAAVFLSLAPKSNAT 364
Query: 483 YRALGAAQKVIRESVGQNEG---VPLHLRNAPTKLMKEIGYGKGYIYTPD-----DPSAK 534
+A AA+K +R G VP+ +RNA TKLMK+ GYG GY Y D DP +
Sbjct: 365 IKAYFAARKEVR-----RRGPLPVPMEIRNAVTKLMKQAGYGSGYRYPHDLEGNVDPRHR 419
Query: 535 QSFLPPSLEGY 545
S LP L +
Sbjct: 420 -SHLPERLRDH 429
>gi|417842098|ref|ZP_12488193.1| Replication-associated recombination protein A [Haemophilus
haemolyticus M19501]
gi|341947878|gb|EGT74519.1| Replication-associated recombination protein A [Haemophilus
haemolyticus M19501]
Length = 446
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQTHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQ-NCLADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPKRGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDHTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS---AKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P+ A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYVAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|452746992|ref|ZP_21946798.1| recombination factor protein RarA [Pseudomonas stutzeri NF13]
gi|452009105|gb|EME01332.1| recombination factor protein RarA [Pseudomonas stutzeri NF13]
Length = 441
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 266/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R ++++ VGQ+HLL+ LR A+ L S++FWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLAR-LLAKV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + K +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALTE-----PKGLGE 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ + L + DGD R LN LE ++ A E G
Sbjct: 185 LNLTLPEESFQMLLAAADGDGRRLLNLLENASDLA----------------EQGG----- 223
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+++ D ++ +D+ GE Y+ ISALHKS+RG++ DAA+YW ARML+GG PL
Sbjct: 224 -VISTDLLQDLLGDSRRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARR+VR ASE++G ADP AL ++ + LG PE + +AQ + YLA APKS ++
Sbjct: 283 YIARRVVRMASEEIGNADPRALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + E+ Q VPLHLRNAPTKLMKE+GYG Y Y D+P +A + + P
Sbjct: 343 YTAFKAAMRDAAENGSQE--VPLHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
++E ++
Sbjct: 401 EAMEPRRY 408
>gi|388580064|gb|EIM20382.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 556
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/458 (40%), Positives = 262/458 (57%), Gaps = 33/458 (7%)
Query: 89 EKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSL 148
+K K ++I P+P+F++ ++ + A PL+E++RP ++ VGQD L+ N +
Sbjct: 77 KKVKKKDIPPAPIFQQSQSNSQGNLQKA-----QPLAEKVRPNTLDGYVGQDDLMGENGI 131
Query: 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDA 208
LR + ++ + S + WGPPG+GKTTLA+ I + K + SA +GV + + ++ A
Sbjct: 132 LRDMIVNDTISSSLLWGPPGSGKTTLARIIAKTSRAKLKEI--SATNTGVNEAKQILDQA 189
Query: 209 RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRC 268
+ S RT++FVDE+HR++K QQD FLP IE G+ V IGATTENPSF + LLSRC
Sbjct: 190 KATLQVSGTRTIIFVDELHRYSKLQQDIFLPHIESGACVLIGATTENPSFKINNALLSRC 249
Query: 269 RVLTLNPLKPHDVEILLKRAVDD---VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARV 325
++ L L + +L A+ N G V+ D + +L S DGD RV
Sbjct: 250 QIYKLEKLTMEALTRMLSNALTHWKVANEGYD-----INALVDDDFVRYLASISDGDGRV 304
Query: 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAG 385
ALN+LE+ + +R K + ++D + L YDR G
Sbjct: 305 ALNSLEMVLRSVEIRRASSSAKPLTKQDLMGSLKRSIVL---------------KYDRDG 349
Query: 386 EEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALN 445
+ HY+ ISA HKS+RG+D +A++YWLARMLE GE PLY+ RR+V ASED+G+AD AL
Sbjct: 350 DFHYDSISAFHKSLRGSDVNASVYWLARMLEAGEDPLYVCRRMVVVASEDIGMADSYALT 409
Query: 446 QAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPL 505
A + YQAC +GMPEC + LA C YLA APKS Y A A ++ + VPL
Sbjct: 410 LATATYQACQVIGMPECRINLAHCCVYLAEAPKSTRSYEAYNKAVAAVK--MFPQYPVPL 467
Query: 506 HLRNAPTKLMKEIGYGKGYIYTPD-DPSAKQSFLPPSL 542
HLRNAPT+LMK++ YGK Y+Y P D Q + P +
Sbjct: 468 HLRNAPTRLMKDLNYGKDYLYNPAYDHPVHQEYFPDEM 505
>gi|456354589|dbj|BAM89034.1| recombination factor protein RarA [Agromonas oligotrophica S58]
Length = 419
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 262/431 (60%), Gaps = 38/431 (8%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183
+ ER+RP ++DVVGQDH+L P+ L + + L S+IFWGPPGTGKTT+A+ + + A
Sbjct: 1 MPERLRPHKLSDVVGQDHILGPDGALTRMLETRTLGSLIFWGPPGTGKTTVARLLAD--A 58
Query: 184 VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED 243
F +SAV SGV D++ V DA + R ++ + T+LFVDEVHRFN++QQDSFLPV+ED
Sbjct: 59 TELHFEQISAVFSGVADLKK-VFDAARARRETGQGTLLFVDEVHRFNRAQQDSFLPVMED 117
Query: 244 GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGT 303
G++V +GATTENPSF L LLSR RVL + L +E L A ++V G
Sbjct: 118 GTVVLVGATTENPSFELNAALLSRARVLVFHSLDAAAIEKLYSNA---------EAVEGH 168
Query: 304 RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363
++ ++ +A L DGD R AL E EV ++DE
Sbjct: 169 KLPLDDEARAVLIRMADGDGRAALTLAE-------------EVWRSARKDE------IFN 209
Query: 364 LVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLY 423
V L D Q + YD++ + HYNLISA+HKS+RG+D DAA+Y+ ARML+ GE PL+
Sbjct: 210 AVQLQDI---LQRRAPIYDKSADGHYNLISAMHKSVRGSDPDAALYYFARMLDAGEDPLF 266
Query: 424 IARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIY 483
+ARR+VR A ED+GLADP AL A + A FLG PE + +AQ V Y+A APKS + Y
Sbjct: 267 LARRIVRMAVEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAAY 326
Query: 484 RALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPPS 541
+A GAA++V +E G + P H+ NAPTKLM+ GYG GY Y D P A Q + P +
Sbjct: 327 KAFGAAKRVAKE--GGSLLPPKHILNAPTKLMQGEGYGAGYQYDHDTPDAFSGQDYFPEA 384
Query: 542 LEGYKFLDWPK 552
L F D P+
Sbjct: 385 LGRQHFYDPPE 395
>gi|302658374|ref|XP_003020891.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
gi|291184761|gb|EFE40273.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
Length = 551
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/441 (43%), Positives = 265/441 (60%), Gaps = 35/441 (7%)
Query: 111 VDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTG 170
V S+ AL APL+ERMRP ++++ GQ+ L+ N +LR + +R+PS+I WG GTG
Sbjct: 130 VKSSNALQ-KSAPLAERMRPRTLDEMCGQE-LVGENGVLRGLIERDRVPSMILWGSAGTG 187
Query: 171 KTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230
KTTLA+ I + V +FV +++ +SGV + + +A+ + ++T++F DE+HRF+
Sbjct: 188 KTTLARVIAS--MVGSRFVEINSTSSGVAECKKLFAEAKNELSLTGRKTIIFCDEIHRFS 245
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
KSQQD FL +E G + IGATTENPSF + LLSRCR TL L ++ +L RA+
Sbjct: 246 KSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLAKLTEENICAILNRALR 305
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
S S V+ + I++L + DGDAR ALN LE++ ++
Sbjct: 306 LEGPNYSPSA-----LVDDELIKYLAAFADGDARTALNLLELAM-------------DLS 347
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYW 410
Q + +T D+ K++ + L YDRAG++HY+ ISA HKS+RG+D DA++Y+
Sbjct: 348 QREN----------MTKDELKKSL-TRTLVYDRAGDQHYDTISAFHKSIRGSDPDASLYY 396
Query: 411 LARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCV 470
LARM++ GE PLYIARRL+ ASEDVGLAD L+ A + Y A +G+PE + LA
Sbjct: 397 LARMIQSGEDPLYIARRLIVVASEDVGLADNTMLSLATAAYTAVEKIGLPEARINLAHAT 456
Query: 471 AYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD- 529
LALAPKS YR L A + E +P+HLRNAPT+LMKEIGYGK Y Y PD
Sbjct: 457 VALALAPKSTRAYRGLANAMASLEEPGIAGLPIPIHLRNAPTRLMKEIGYGKEYKYNPDY 516
Query: 530 -DPSAKQSFLPPSLEGYKFLD 549
D Q +LP L G FL+
Sbjct: 517 KDGKVVQDYLPDKLIGRNFLE 537
>gi|85110657|ref|XP_963567.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
gi|9453819|emb|CAB99387.1| conserved hypothetical protein [Neurospora crassa]
gi|28925252|gb|EAA34331.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
Length = 622
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 200/459 (43%), Positives = 271/459 (59%), Gaps = 37/459 (8%)
Query: 97 EPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN 156
+PSP + L R ++ +A PL+ERMRP +++DV GQD L+ PN +LR+ + ++
Sbjct: 159 QPSPPIQPLVKRTKPNNRSA------PLAERMRPGSLDDVFGQD-LVGPNGVLRALIETD 211
Query: 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSN 216
R+PS+I WG GTGKTT+A+ I +F+ L+A +SGV + + +A +
Sbjct: 212 RVPSMILWGGSGTGKTTIARCIAQRTG--SRFIELNATSSGVAECKKYFGEAANELHLTG 269
Query: 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPL 276
+RT++F DE+HRF K+QQD FL +E G+I IGATTENPSF ++ LLSRCR TL PL
Sbjct: 270 RRTIIFCDEIHRFTKAQQDIFLKPVEAGTITLIGATTENPSFKVVPALLSRCRTFTLQPL 329
Query: 277 KPHDVEILLKRA----VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332
D++ +L RA + D + LS + + + + +LC+ DGDAR ALN LE+
Sbjct: 330 SRDDLQRILLRALKQEITDQHLPLSPLI-------DDELLSYLCAFADGDARTALNLLEL 382
Query: 333 SAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLI 392
+ + ES +A K L YDRA ++HY+ I
Sbjct: 383 ALSLTTTTTTTTSSPDEPLTKES---------------IKASLTKTLVYDRASDQHYDTI 427
Query: 393 SALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQ 452
SA HKS+RG+D DA++Y+LARML+ GE PL+IARRLV ASEDVGLAD L A + Y
Sbjct: 428 SAFHKSIRGSDPDASLYYLARMLQSGEDPLFIARRLVVIASEDVGLADNSLLPLATATYT 487
Query: 453 ACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPT 512
A +GMPE + LA C L LAPKS YR L A +RE VPLHLRNAPT
Sbjct: 488 ATQQIGMPEARIPLAHCTVALCLAPKSTRAYRGLNNAFSALREPGVAALPVPLHLRNAPT 547
Query: 513 KLMKEIGYGKGYIYTPD--DPSAKQSFLPPSLEGYKFLD 549
+LMKE+GYG Y Y P+ + KQS+LP L G KFL+
Sbjct: 548 RLMKEMGYGAEYKYPPNYRNGRVKQSYLPGELVGRKFLE 586
>gi|402849248|ref|ZP_10897488.1| Holliday junction DNA helicase [Rhodovulum sp. PH10]
gi|402500561|gb|EJW12233.1| Holliday junction DNA helicase [Rhodovulum sp. PH10]
Length = 446
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/429 (44%), Positives = 258/429 (60%), Gaps = 42/429 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + +VVGQDHLL P+ L + ++ L S++FWGPPGTGKTT+A+ + +
Sbjct: 27 PLADRLRPTALAEVVGQDHLLGPDGALTRMIETHSLGSLVFWGPPGTGKTTVARLLAH-- 84
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F LSAV SGV D++ A + AR R ++ + T+LFVDEVHRFN++QQDSFLPV+E
Sbjct: 85 ATDLEFAQLSAVFSGVADLKKAFDTARARR-ETGQGTLLFVDEVHRFNRAQQDSFLPVME 143
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVL PL +E LL RA + V G
Sbjct: 144 DGTVVLVGATTENPSFELNAALLSRARVLVFRPLDGPALEKLLARA---------EEVEG 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALE--ISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+ ++ +A L DGD R AL E A A R K ++++
Sbjct: 195 KPLPLDEEARGVLVRMADGDGRAALTLAEEIWRAARAGERFDAKTLQDI----------- 243
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
Q + YD++ + HYNLISALHKS+RG+D DAA+YWL RML+ GE
Sbjct: 244 -------------VQRRAPIYDKSRDGHYNLISALHKSVRGSDPDAALYWLCRMLDAGED 290
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PL++ARRLVR ASED+GLADP AL A + A FLG PE + +A+ V Y+A APKS
Sbjct: 291 PLFLARRLVRMASEDIGLADPQALVIANAAKDAYDFLGSPEGELAIAEAVIYMATAPKSN 350
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFL 538
+ Y A GAA + ++ G + P H+ NAPTKLMK+ GY GY Y ++ + Q +
Sbjct: 351 ATYVAFGAAMRTAKQ--GGSLVPPKHILNAPTKLMKQEGYSAGYEYDHATENAFSGQDYF 408
Query: 539 PPSLEGYKF 547
P L F
Sbjct: 409 PEELGRQSF 417
>gi|420149551|ref|ZP_14656726.1| MgsA AAA+ ATPase, C-terminal domain protein [Capnocytophaga sp.
oral taxon 335 str. F0486]
gi|394753538|gb|EJF37058.1| MgsA AAA+ ATPase, C-terminal domain protein [Capnocytophaga sp.
oral taxon 335 str. F0486]
Length = 426
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/439 (41%), Positives = 263/439 (59%), Gaps = 37/439 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ERMRP ++ VGQ+HL+ LR + LPS+IFWGPPGTGKTTLA I +
Sbjct: 3 SPLAERMRPTSLAQYVGQEHLVGAQGALRQQIERGLLPSLIFWGPPGTGKTTLANIIAHQ 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA++SG+K+VR+ ++ +++ + + + ++F+DE+HRFNK+QQDS L
Sbjct: 63 S--NRAFYTLSAISSGIKEVREVIDQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF +I LLSRC+V LN + D+E LL +N +++ V
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFERKDLEQLL-------HNAITQDV 173
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++ E L GD R LN E+ PV
Sbjct: 174 ILKTKDIQLQETEALLRLSGGDGRKLLNTFELIVNATPEGEPV----------------- 216
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T D Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 217 ---VITNDSVLRLVQKNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARR++ ASED+G A+P A+ A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 274 VKFIARRMLILASEDIGNANPTAMILANNTFQAVTTIGYPEARIILSQCAIYLASSPKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y+A+ +Q+V++++ + VP+HLRNAPTKLMKE+GYGK Y Y D S A Q +L
Sbjct: 334 ASYKAINKSQQVVKQT--GDLSVPIHLRNAPTKLMKELGYGKDYQYAHDYESNFAFQDYL 391
Query: 539 PPSLEGYKFL---DWPKSN 554
P L+G F D P+ N
Sbjct: 392 PDELQGETFYEPSDNPREN 410
>gi|295675840|ref|YP_003604364.1| ATPase AAA [Burkholderia sp. CCGE1002]
gi|295435683|gb|ADG14853.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
Length = 437
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 255/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQSHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFDAQFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L + LL+RA K +GG
Sbjct: 127 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLTDDEQRELLERA--------QKELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A L + DGD R LN LEI A AA ++ E DG
Sbjct: 179 --LTFTDEARTALIGSADGDGRKLLNNLEIVARAAAQ----------QKTTEIDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG++ D A+YW RML+GG P
Sbjct: 227 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A + + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + + Q+ VP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFVGKD--QSRAVPVHLRNAPTKLMKELGYGHDYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
+
Sbjct: 395 DGM 397
>gi|319643669|ref|ZP_07998286.1| AAA family ATPase [Bacteroides sp. 3_1_40A]
gi|345521418|ref|ZP_08800744.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA]
gi|254834496|gb|EET14805.1| recombination factor protein RarA [Bacteroides sp. 4_3_47FAA]
gi|317384699|gb|EFV65661.1| AAA family ATPase [Bacteroides sp. 3_1_40A]
Length = 425
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/438 (43%), Positives = 261/438 (59%), Gaps = 36/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++D +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 4 PLAERLRPKTLDDYIGQKHLVGPGAVLRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVRD +E AR R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVRDVIEKARSNRFFSQASPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L + + ++ ++N ++K V
Sbjct: 122 TGVVTLIGATTENPSFEVIRPLLSRCQLYVLK-------SLEKEDLLELLHNAIAKDVIL 174
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ + + GDAR LN LE+ A PV
Sbjct: 175 KEKKIELKETDAMLRFSGGDARKLLNILELVVEADADAGPV------------------- 215
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D A+YWLARM+E GE P
Sbjct: 216 -VITDEKVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGALYWLARMVEAGEDPA 274
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ YLA +PKS S
Sbjct: 275 FIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEATVYLATSPKSNSA 334
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPP 540
Y + +A +++R++ N VPLHLRNAPTKLMK++GYGK Y Y +Q FLP
Sbjct: 335 YEGINSALELVRQT--GNLPVPLHLRNAPTKLMKQLGYGKDYKYAHAYQGNFVQQQFLPD 392
Query: 541 SLEGYKFLDW-PKSNTTD 557
++G + W P++N +
Sbjct: 393 EVKGSRI--WHPQNNAQE 408
>gi|206576595|ref|YP_002239455.1| recombination factor protein RarA [Klebsiella pneumoniae 342]
gi|288936305|ref|YP_003440364.1| ATPase AAA [Klebsiella variicola At-22]
gi|206565653|gb|ACI07429.1| putative DNA recombination-associated ATPase RarA [Klebsiella
pneumoniae 342]
gi|288891014|gb|ADC59332.1| AAA ATPase central domain protein [Klebsiella variicola At-22]
Length = 447
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 259/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLDQAMNDKSRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QDIILPEETRKAIAELVNGDARRALNTLEMMADMA----------------ESDDSGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKAEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+ + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAALSDARDRPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|409436865|ref|ZP_11264024.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Rhizobium mesoamericanum STM3625]
gi|408751339|emb|CCM75178.1| putative polynucleotide enzyme with nucleotide triphosphate
hydrolase domain [Rhizobium mesoamericanum STM3625]
Length = 438
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 197/437 (45%), Positives = 257/437 (58%), Gaps = 48/437 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP +++V GQDHL + +LR + S L S+IFWGPPGTGKTT+A+ + S
Sbjct: 19 PLADRLRPRALSEVTGQDHLTGEDGVLRRMIDSGSLGSMIFWGPPGTGKTTVARLL--SG 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
S F +SA+ SGV D++ E AR LR ++T+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 77 EASLAFEQISAIFSGVADLKKVFEAAR-LRRMDGRQTLLFVDEIHRFNRAQQDSFLPVME 135
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++ +GATTENPSF L LLSR RVLT +E LLKRA ++ G
Sbjct: 136 DGTVILVGATTENPSFELNAALLSRARVLTFKSHDDESLEELLKRA---------ETTEG 186
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES---DGCS 359
+ + +DA L DGD R L E EV +EDE+ DG +
Sbjct: 187 KTLPLTNDARASLLRMADGDGRAVLTLAE-------------EVWRAAREDETFDTDGLT 233
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V Q + YD+A + HYNLISALHKS+RG+D DAA+Y+LARM + GE
Sbjct: 234 RIV------------QRRAPVYDKAQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGE 281
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
PLY+ RRLVR A ED+GLADP AL + A +LG PE + LAQ YLA APKS
Sbjct: 282 DPLYLGRRLVRMAVEDIGLADPQALVICNAAKDAYDYLGSPEGELALAQACVYLATAPKS 341
Query: 480 ISIYRALGAAQKVIRESVGQNEGV--PLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQ 535
++Y A AA + QN + P H+ NAPTKLMK GYG+GY Y D+P A Q
Sbjct: 342 NAVYTAFKAATMAAK----QNGSLLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQ 397
Query: 536 SFLPPSLEGYKFLDWPK 552
+ P + F D P+
Sbjct: 398 DYFPEKMGRQTFYDPPE 414
>gi|90417739|ref|ZP_01225651.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1]
gi|90337411|gb|EAS51062.1| ATPase, AAA family [Aurantimonas manganoxydans SI85-9A1]
Length = 452
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/427 (44%), Positives = 253/427 (59%), Gaps = 38/427 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + +VVGQ+HL +L + + L S+IFWGPPGTGKTT+A+ + + V
Sbjct: 32 PLADRLRPRQLGEVVGQEHLTGEGGVLSRMLEATSLGSMIFWGPPGTGKTTVARLLAHEV 91
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
Y F +SA+ SGV D++ E AR LR + +RT+LFVDE+HRFN++QQDSFLPV+E
Sbjct: 92 --DYAFEQISAIFSGVADLKKMFETAR-LRRSNGRRTLLFVDEIHRFNRAQQDSFLPVME 148
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG++V +GATTENPSF L LLSR RVLT P + LL+RA ++ G
Sbjct: 149 DGTVVLVGATTENPSFELNAALLSRARVLTFKPHGSASLVKLLERA---------EATEG 199
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +N A L DGD R AL E EV ++ E
Sbjct: 200 MALPLNEQARAVLLRMADGDGRAALTLAE-------------EVWRASRKGE-------- 238
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +E Q + YD+ + HYNLISALHKS+RG+D DAA+YWL RML+ GE PL
Sbjct: 239 -IFDAAGLQEIVQRRAPVYDKGQDGHYNLISALHKSVRGSDPDAALYWLCRMLDAGENPL 297
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ RRLVR ASED+GLADP AL A++ A +LG PE + LA+ YLA APKS ++
Sbjct: 298 YLGRRLVRMASEDIGLADPRALGIALAAKDAFDYLGSPEGELALAEATVYLASAPKSNAV 357
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA--KQSFLPP 540
Y A AA + +E + P H+ NAPT LM++ GYG GY Y D P A Q + P
Sbjct: 358 YTAYKAAMRAAKEH--GSLLPPKHILNAPTALMRDEGYGSGYAYDHDAPDAFSGQDYFPD 415
Query: 541 SLEGYKF 547
++ +F
Sbjct: 416 EMDRQQF 422
>gi|319761904|ref|YP_004125841.1| ATPase AAA [Alicycliphilus denitrificans BC]
gi|317116465|gb|ADU98953.1| AAA ATPase central domain protein [Alicycliphilus denitrificans BC]
Length = 437
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 196/429 (45%), Positives = 257/429 (59%), Gaps = 42/429 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP + +VVGQ H+L P LR A S R S I WGPPG GKTT+A+ +
Sbjct: 8 HQPLAERLRPRTLGEVVGQQHVLGPGMPLRLAFESGRPHSCILWGPPGVGKTTIARLMAE 67
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLP 239
A +F+ +SAV GVKD+RDAV+ A +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 68 --AFDAQFISISAVLGGVKDIRDAVQLAESAAGGLMPQRTIVFVDEVHRFNKSQQDAFLP 125
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G F+GATTENPSF + + LLSR V L PL D++ ++ RA D L
Sbjct: 126 HVESGLFTFVGATTENPSFEVNSALLSRAAVYVLQPLTSDDLKRIVVRAQD--IQALPA- 182
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
+ ++A+E L + DGDAR LN LE ++TA E +VE
Sbjct: 183 -------IENEALERLIAYADGDARRLLNTLETLSVTA-------EQAKVE--------- 219
Query: 360 PYVALVTLDDAK--EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
T+ DA + + YD+ GE+ Y+ ISALHKS+RG+D DAA+YWL RML+G
Sbjct: 220 ------TITDAWLLQVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDG 273
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
G P Y+ARR+VR A ED+GLADP A+ Q LG PE + LAQ V YLA+AP
Sbjct: 274 GADPRYMARRIVRMAWEDIGLADPRAMQICNEAAQTYERLGSPEGELALAQAVLYLAVAP 333
Query: 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAK 534
KS + Y A A+ +++ VPLHLRNAPT+LMKE+ YGKGY Y D+ +A
Sbjct: 334 KSNAGYMAYNKARAFVKQD--GTRPVPLHLRNAPTRLMKELDYGKGYRYAHDEEGGFAAG 391
Query: 535 QSFLPPSLE 543
+S+LP +E
Sbjct: 392 ESYLPEGME 400
>gi|160871530|ref|ZP_02061662.1| DNA-dependant ATPase [Rickettsiella grylli]
gi|159120329|gb|EDP45667.1| DNA-dependant ATPase [Rickettsiella grylli]
Length = 434
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 263/430 (61%), Gaps = 35/430 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ R+RP +++ GQ HLL P LR A+ +N+L S+I WGPPGTGKTTLA+ + +
Sbjct: 9 SPLAARLRPQHLDQFFGQAHLLGPQKPLRRALLNNQLHSMILWGPPGTGKTTLAQLMAHH 68
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDAR-KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ KF LSA+ SGVK++R + + ++ ++T+ FVDE+HRFNKSQQDS LP
Sbjct: 69 IQA--KFESLSALQSGVKEIRQLADRIKSQMNTHQPQKTICFVDEIHRFNKSQQDSLLPF 126
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF + LLSR RV L L +D+ ++ RA++D NGL
Sbjct: 127 VESGLFILIGATTENPSFEINNALLSRTRVYVLKKLSVNDIMKIIDRALNDQVNGL---- 182
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G ++ + + L DGDAR ALN LEI+A E+ + +
Sbjct: 183 GRQQLMMETSIKKQLAHMADGDARQALNLLEIAA-------------EIAENN------- 222
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++ + K+ Q +D+ GE Y+ ISALHKS+RG D DAA+YWLARML+GG
Sbjct: 223 ---IIDQNSLKKMTQTSLRRFDKNGEFFYDQISALHKSVRGTDPDAALYWLARMLDGGCD 279
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLYIARR+VR ASED+G ADP L+ A+ + A LG PE + LAQ V YL+ KS
Sbjct: 280 PLYIARRIVRMASEDIGNADPRGLHIALDAWMAQERLGSPEGELALAQAVVYLSCTTKSN 339
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA---KQSF 537
++Y A + ++ES G E VP+HLRNAPT+LM+++ YGK Y Y D+P A +++
Sbjct: 340 AVYTAFKKVMREVKES-GSLE-VPIHLRNAPTQLMRKLHYGKNYRYAHDEPDAYAFGENY 397
Query: 538 LPPSLEGYKF 547
LP L G ++
Sbjct: 398 LPEELVGRQY 407
>gi|398944042|ref|ZP_10671043.1| AAA ATPase [Pseudomonas sp. GM41(2012)]
gi|398158745|gb|EJM47085.1| AAA ATPase [Pseudomonas sp. GM41(2012)]
Length = 440
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 265/428 (61%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+HLL+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRAANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + +RT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L+ RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ ++ + + L S DGD R LN LE ++ A ED S+
Sbjct: 185 RQLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSE------ 224
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D + +D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG PL
Sbjct: 225 --IGVDLLQSLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y AA + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMGFKAALRSATEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE F
Sbjct: 401 EELEPQPF 408
>gi|421891189|ref|ZP_16322009.1| Replication-associated recombination protein A [Ralstonia
solanacearum K60-1]
gi|378963476|emb|CCF98757.1| Replication-associated recombination protein A [Ralstonia
solanacearum K60-1]
Length = 448
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 196/429 (45%), Positives = 262/429 (61%), Gaps = 42/429 (9%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H PL+ER+RP ++++V+GQ HLL P LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 12 HMPLAERLRPHSVDEVIGQRHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMAD 71
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
A +F+ LSAV SGVKD+R+AVE A + R +RT++FVDEVHRFNKSQQD+FLP
Sbjct: 72 --AFDAEFIALSAVLSGVKDIREAVERAEQFRAH-GRRTLVFVDEVHRFNKSQQDAFLPH 128
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G FIGATTENPSF + LLSR V L L +++ L +RA + +
Sbjct: 129 VESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERA--------RQEL 180
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
GG +E A++ + ++ DGD R LN LEI +T A R + E D
Sbjct: 181 GG--LEWAPAALDAVVASADGDGRKLLNNLEI--VTRAARA----------QAEGD---- 222
Query: 361 YVALVTLDDA--KEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+ T+D+A A +D+ G+ Y+ ISALHKS+RG+D DAA+YW RML+GG
Sbjct: 223 --TVPTVDEALLASALSENLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGG 280
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARR+VR A ED+GLADP A + + LG PE + LAQ + YLA+APK
Sbjct: 281 ADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPEGELALAQALIYLAIAPK 340
Query: 479 SISIYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SA 533
S + Y A AA R VGQ++ VP+HLRNAPT+LMKE+GYG Y Y D+P +A
Sbjct: 341 SNAGYNAYNAA----RAFVGQDKSRPVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAA 396
Query: 534 KQSFLPPSL 542
+++ P L
Sbjct: 397 GETYFPDDL 405
>gi|418465918|ref|ZP_13036850.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359755416|gb|EHK89580.1| recombination factor protein RarA [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 446
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 267/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + GQ HLL LR A+ + + S+IFWGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTTLAQYCGQSHLLGEGKPLRRAIEAGYVHSMIFWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ ++ + RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDKAKQNKL-AGLRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L PL ++E +L++A+DD+ NGL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYILKPLSAPEIERVLQQAIDDLENGLGK---- 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + L +GDAR+ALN LE+ A + +G
Sbjct: 188 VWLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAG--------------ESENGKILDR 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D+ G+ Y+ ISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 234 TLLT-----EVLGERQARFDKQGDRFYDFISALHKSIRGSAPDAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA+K+ ES + VP HLRNAPT LMK++G+G Y Y D+P +A +++ P
Sbjct: 349 YLAFKAAKKLAAESADFD--VPEHLRNAPTNLMKDLGFGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ +F
Sbjct: 407 PQLKETQF 414
>gi|153806769|ref|ZP_01959437.1| hypothetical protein BACCAC_01041 [Bacteroides caccae ATCC 43185]
gi|423218107|ref|ZP_17204603.1| hypothetical protein HMPREF1061_01376 [Bacteroides caccae
CL03T12C61]
gi|149131446|gb|EDM22652.1| recombination factor protein RarA [Bacteroides caccae ATCC 43185]
gi|392627610|gb|EIY21645.1| hypothetical protein HMPREF1061_01376 [Bacteroides caccae
CL03T12C61]
Length = 423
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 269/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ +
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLERAIST-----DTVLKE 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V + D D
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILEL----------------VVESDTDD-----T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDDMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C++ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLLANACFETLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WQPQNNPAEQ 407
>gi|332882226|ref|ZP_08449856.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332679849|gb|EGJ52816.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 425
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 186/438 (42%), Positives = 262/438 (59%), Gaps = 37/438 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP + D VGQ+HL+ L + LPS+IFWGPPGTGKTTLA I +
Sbjct: 3 PLAERMRPTTLEDYVGQEHLVGTQGALSQQIARGFLPSLIFWGPPGTGKTTLANIIAHQS 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F LSA++SG+K+VR+ +E +++ + + + ++F+DE+HRFNK+QQDS L +
Sbjct: 63 --NRAFYTLSAISSGIKEVREVIEQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQAV 120
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I IGATTENPSF +I LLSRC+V LN + D+E LL+ A+ SV
Sbjct: 121 EKGWITLIGATTENPSFEVIPALLSRCQVYILNAFERKDLEQLLQNAI------AKDSVL 174
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
T+ ++ E L GD R LN E+ + E +S
Sbjct: 175 KTK-DIQLKETEALLKLSGGDGRKLLNTFEL-------------IVNATPEGQS------ 214
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
++T D Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 215 -VVITNDSVLHLVQKNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGEDV 273
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR++ ASED+G A+P A+ A + +QA +G PE +IL+QC YLA + KS +
Sbjct: 274 KFIARRMLILASEDIGNANPTAMILANNTFQAVTTIGYPEARIILSQCAIYLASSAKSNA 333
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+A+ AQ+V++++ + VP+HLRNAPTKLMKE+GYGK Y Y D A Q +LP
Sbjct: 334 SYKAINKAQQVVKQT--GDLSVPIHLRNAPTKLMKELGYGKDYQYAHDYEGNFAFQDYLP 391
Query: 540 PSLEGYKFL---DWPKSN 554
L+G F D P+ N
Sbjct: 392 DELQGETFYEPSDNPREN 409
>gi|255731133|ref|XP_002550491.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132448|gb|EER32006.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 698
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 182/435 (41%), Positives = 266/435 (61%), Gaps = 20/435 (4%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+RP ++D GQ+ LL + LR+ + S+ +PS + WG PG GKT+LA+ I +
Sbjct: 161 PLAHRLRPKTLDDFFGQEKLLGKDGALRNMIQSDIIPSFLLWGVPGIGKTSLARIIAKNS 220
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
KFV LS + S K++++ A + + +RT+LF+DE+HRFNK+ QD LPVIE
Sbjct: 221 RC--KFVELSGIDSNAKNLKEVFLQAENHKKLTGQRTILFLDEIHRFNKAVQDLLLPVIE 278
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF+L LLSR + PL + +L RA+ +VN K G
Sbjct: 279 KGIVTVIGATTENPSFNLNNALLSRVHTFVMEPLNTESLIKILTRALFEVNRIRKKLYGF 338
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + DA ++ + GD+RVALN LE ++A +A + + +++ SP
Sbjct: 339 HYISLQKDAYHYIANLSMGDSRVALNILETLNAYLSADKFKI----------DNNDTSPK 388
Query: 362 --VALVTLDDAKEAFQCK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417
V V+ D K + + H YDR G+ HY++ISA HKS+RG+D +AA+++L +ML G
Sbjct: 389 QGVIKVSADLLKPLLKTRNFHQMYDRNGDSHYDIISAFHKSIRGSDPNAAMFYLVKMLSG 448
Query: 418 GEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477
GE P++I RR++ +SED+GL D L ++ +A F+GMPE +ILA C LALAP
Sbjct: 449 GEDPMFIMRRMIVISSEDIGLRDSSCLPFMIAAKEALEFVGMPEGEIILAHCTNKLALAP 508
Query: 478 KSISIYRALGAAQKVIRESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAK 534
KS YRAL +AQ +++E+ + VP+HLRNAPTKLMKE+GYG Y Y P ++ K
Sbjct: 509 KSTKSYRALRSAQNILKENPELTKLPVPIHLRNAPTKLMKELGYGDEYKYNPNYENGKIK 568
Query: 535 QSFLPPSLEGYKFLD 549
Q++ P +E KFLD
Sbjct: 569 QNYFPQGMEPIKFLD 583
>gi|334122635|ref|ZP_08496671.1| replication-associated recombination protein A [Enterobacter
hormaechei ATCC 49162]
gi|333391750|gb|EGK62859.1| replication-associated recombination protein A [Enterobacter
hormaechei ATCC 49162]
Length = 447
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 260/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEKVLTQAMEDKARGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + +GDAR ALN LE+ A A V K V ++QE
Sbjct: 188 QDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRV--LKQE---------- 235
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L+T E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 236 -LLT-----EIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMSDARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|303257968|ref|ZP_07343977.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium
1_1_47]
gi|302859311|gb|EFL82393.1| magnesium chelatase, subunit ChlI family [Burkholderiales bacterium
1_1_47]
Length = 484
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 257/412 (62%), Gaps = 33/412 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ER+RP I++VVGQ HLL P LRSA + S+I WGPPG GKTTLA+ + +
Sbjct: 36 SPLAERLRPKTIDEVVGQKHLLGPGKPLRSAFENAHPHSMILWGPPGVGKTTLARLMAD- 94
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A F+ +SAV GVKD+RDAVE A R K+ + TV+FVDEVHRF+KSQQD+FLP +
Sbjct: 95 -AFGLPFISISAVLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAFLPHV 153
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G FIGATTENPSF +I+ LLSR V L LK D+E LL RA++ GL
Sbjct: 154 ESGLFTFIGATTENPSFEVISALLSRSTVYVLESLKEEDLEELLHRALEREYLGL----- 208
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+VN +A + L DGDAR LNALE+SA A R +K ++++ +
Sbjct: 209 ----KVNEEAEKILIGLADGDARRFLNALEVSATMAKDR----GIKVIDEK--------F 252
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V + A +D+ G+ Y+ ISALHKS+RG+D DAA+YW+ RML+GG P
Sbjct: 253 V--------RAALPATIRRFDKGGDNFYDQISALHKSVRGSDPDAALYWMCRMLDGGVDP 304
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+R + ED+GLADP + + LG PE + LA V YLA APKS+S
Sbjct: 305 LYIARRLMRMSIEDIGLADPRGMEITTNAVDIYERLGSPEGELALANAVVYLACAPKSVS 364
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
+Y+A + +++ VP+H+RNAPTKLM+++G G GY Y PD+P +
Sbjct: 365 VYKAFNKMRAFVKQD--GTRPVPMHIRNAPTKLMQKVGNGAGYRYPPDEPGS 414
>gi|422022247|ref|ZP_16368755.1| recombination factor protein RarA [Providencia sneebia DSM 19967]
gi|414096740|gb|EKT58396.1| recombination factor protein RarA [Providencia sneebia DSM 19967]
Length = 447
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 264/428 (61%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPQVLEQYIGQKHLLAEGKPLPKAIKAGHLHSMILWGPPGTGKTTLAEVIGHYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+++E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADIERI--SAVTSGIKEIRESIEKARQNR-SAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L+P D+E +L +A+ DV GL GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLEPEDIEEVLLQAMSDVERGL----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR +LN LE+ A E +S G
Sbjct: 188 KNIILPDSTRKLIAELVNGDARRSLNLLEMMTDMA--------------ESDSQGQR--- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 231 -VLTPELLKEVSGERAARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASED+G ADP A+ AVS + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDIGNADPRAMQVAVSAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + + + VP HLRNAPTKL+KE+G GK Y Y ++P +A + + P
Sbjct: 350 YTAYKAA--LADAQLKPDYDVPAHLRNAPTKLLKELGAGKEYRYAHNEPNAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P ++G ++
Sbjct: 408 PEMQGTQY 415
>gi|407712579|ref|YP_006833144.1| ATPase [Burkholderia phenoliruptrix BR3459a]
gi|407234763|gb|AFT84962.1| ATPase [Burkholderia phenoliruptrix BR3459a]
Length = 437
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/423 (45%), Positives = 258/423 (60%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VFIGATTENPSF + + LLSR V L L ++ LL+RA +GG
Sbjct: 127 SGLFVFIGATTENPSFEVNSALLSRAAVYVLKSLDEDELRELLERA--------QHELGG 178
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ +A + L + DGD R LN LEI A A+ +++ E DG
Sbjct: 179 --LTFTDEARDALIGSADGDGRKLLNNLEIVARAASQ----------QKKTEIDGALLGS 226
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL +D+ G+ Y+ ISALHKS+RG+ D A+YW RML+GG P
Sbjct: 227 ALAE----------NLRRFDKGGDAFYDQISALHKSVRGSSPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A+ + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + + ++ VP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFVGKD--KSRAVPVHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
++
Sbjct: 395 ENM 397
>gi|282880078|ref|ZP_06288798.1| recombination factor protein RarA [Prevotella timonensis CRIS
5C-B1]
gi|281305951|gb|EFA97991.1| recombination factor protein RarA [Prevotella timonensis CRIS
5C-B1]
Length = 431
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/427 (44%), Positives = 260/427 (60%), Gaps = 34/427 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++ VGQ HL+ +++LR + S + S I WGPPG GKTTLA+ + N +
Sbjct: 4 PLAERMRPRTLDEYVGQQHLVGKDAVLRKMIESGHVSSFILWGPPGVGKTTLAQIVANKL 63
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR +E A+ +LF+DE+HRF+KSQQDS L +E
Sbjct: 64 ETP--FYTLSAVTSGVKDVRQVIERAKSNHFFQTASPILFIDEIHRFSKSQQDSLLGAVE 121
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + IGATTENPSF +I PLLSRC++ L PL D+ LL RAV++ +
Sbjct: 122 RGIVTLIGATTENPSFEVIRPLLSRCQLYLLKPLGKEDLLKLLHRAVNE-----DVILKN 176
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ L GDAR LN LE+ ++AA E E+
Sbjct: 177 RNIELQETGA--LLRYSGGDARKLLNILEL-VVSAA---------ETEK----------- 213
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+VT ++ Q LAYD+ GE HY++ISA KS+RG+D DAA+YW+ARM+EGGE P
Sbjct: 214 VVVTDQIVEQQLQQNPLAYDKGGEMHYDIISAFIKSIRGSDPDAALYWMARMIEGGEDPQ 273
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A + + A +G PE + LA+ V YLA +PKS S
Sbjct: 274 FIARRLVISAAEDIGLANPNALLLANAAFDAVMKIGWPEGRIPLAEAVVYLATSPKSNSA 333
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPP 540
Y + A ++RE+ N VPL LRNAPT+LMK++GY GY+Y+ D P +Q +LP
Sbjct: 334 YLGIDKALSIVRET--GNLPVPLPLRNAPTQLMKDLGYHDGYLYSHDYPGHFVQQQYLPD 391
Query: 541 SLEGYKF 547
+L+ ++
Sbjct: 392 ALQHHRI 398
>gi|260437226|ref|ZP_05791042.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
gi|292810539|gb|EFF69744.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
Length = 446
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 183/434 (42%), Positives = 260/434 (59%), Gaps = 29/434 (6%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP +++V+GQ H++ + LL A+ +++L SIIF+GPPGTGKTTLAK I N+
Sbjct: 17 PLASRMRPKTLDEVMGQKHIIGKDKLLYRAIKADKLSSIIFYGPPGTGKTTLAKVIANTT 76
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ S++ ++A +G KD+ D V A+ + +RT+LFVDE+HRFNK QQD LP +E
Sbjct: 77 SASFR--QINATVAGKKDMEDVVNGAKDIMASMGQRTILFVDEIHRFNKGQQDYLLPYVE 134
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+ IGATTENP F + L+SR V L PL+ D+ ++K AV D G+ G
Sbjct: 135 DGTIILIGATTENPYFEVNKALISRSVVFELKPLEKEDILSIIKTAVYDTKRGM----GN 190
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++ DA EFL +GDAR ALNA+E+ +T +D + +
Sbjct: 191 YNAVIDDDAAEFLADMSNGDARNALNAVELGIMT------------------TDAGNDGI 232
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+TLD A + Q + L YD+ G+ HY+ ISA KSMRG+D DAA+Y+LARM+ GE P
Sbjct: 233 IHITLDVASQCIQKRVLRYDKDGDNHYDTISAFIKSMRGSDPDAALYYLARMIYAGEDPK 292
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARR+ ASEDVG ADP A+ AVS + A +GMPE +ILAQ Y+A APKS +
Sbjct: 293 FIARRICICASEDVGNADPCAIQVAVSAFLAVERIGMPESQIILAQACTYVATAPKSNTA 352
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y + A + + + VP +L++A K ++ G GY+Y D + KQ +LP
Sbjct: 353 YHGIELAMDYVAKH--RTAQVPPYLQDAHYKDAAKLDRGTGYLYAHDYKNHYVKQQYLPD 410
Query: 541 SLEGYKFLDWPKSN 554
+ G F +P N
Sbjct: 411 EVVGNTFY-YPSDN 423
>gi|402224382|gb|EJU04445.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 590
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/447 (43%), Positives = 270/447 (60%), Gaps = 34/447 (7%)
Query: 109 HDVDSTTALHVPHA-PLSERMRPVNINDVVGQDHLLSPNSLLRSAV---CSNRLPSIIFW 164
H + ++T+ ++ A PL+ER+RP ++D VGQ+ ++ P SLLR + S + S + W
Sbjct: 110 HTIKNSTSSNLLAAQPLAERLRPQTLDDFVGQEDVVGPGSLLRGLMEKEGSTGVGSCVLW 169
Query: 165 GPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVD 224
GPPGTGKTTLA+ + + +K LSA +SG DVR E+A+ L + +RT+LFVD
Sbjct: 170 GPPGTGKTTLARILAHKSDAVFKE--LSATSSGTADVRGIFEEAKNLLKLTGRRTILFVD 227
Query: 225 EVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284
E+ RFNK+QQD FLP +E+G I + ATTENPSF + LLSRCRV L+ L ++ +
Sbjct: 228 EIQRFNKAQQDLFLPYVENGWIQLLAATTENPSFKVNGALLSRCRVFVLHSLTYENLLQI 287
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVK 344
L AV +++ S S + +E + GDAR AL+ALE+ A
Sbjct: 288 LCNAVSRISSSTSPSTSAPARPIPDQILERIARLSAGDARTALSALELVLSAPAT----- 342
Query: 345 EVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDA 404
L+ K + + YDR G++ Y+LISALHKS+RG+D
Sbjct: 343 ----------------LSEAALLETVKRSVVAR---YDRTGDDRYDLISALHKSLRGSDV 383
Query: 405 DAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464
DAA+Y+LARML GE PLY+ARRL+ ASEDVGLA+ AL AVS YQAC +GMPEC +
Sbjct: 384 DAAMYYLARMLSAGEDPLYVARRLIVVASEDVGLANNEALPLAVSTYQACQLIGMPECRI 443
Query: 465 ILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
LA CVA+LAL+ KS Y A A+ ++ VP+++RNAPT+LMKE+GYGKGY
Sbjct: 444 NLAHCVAHLALSKKSTRSYMAYNRAEAAAKQDT--TVPVPMNIRNAPTRLMKELGYGKGY 501
Query: 525 IYTPDDPSAKQS-FLPPSLEGYKFLDW 550
+Y P+ + FLP +L+G +FL W
Sbjct: 502 LYNPNFAHPVHNVFLPSTLQGSRFL-W 527
>gi|354722786|ref|ZP_09037001.1| recombination factor protein RarA [Enterobacter mori LMG 25706]
Length = 447
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A+DD G GG
Sbjct: 132 DGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEKVLTQAMDDKARGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A + K V + E E G
Sbjct: 188 QDIVLPDETRLAIAQLVNGDARRALNTLEMMADMAEIDDSGKRVLKPELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMSDARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEDYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAQTRY 415
>gi|189500549|ref|YP_001960019.1| recombination factor protein RarA [Chlorobium phaeobacteroides BS1]
gi|189495990|gb|ACE04538.1| AAA ATPase central domain protein [Chlorobium phaeobacteroides BS1]
Length = 445
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/424 (45%), Positives = 258/424 (60%), Gaps = 34/424 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER RP N++D+ GQ+HL+ LR + RLPS+IFWGPPG+GKTTLA+ NS+
Sbjct: 26 PLAERARPRNLDDMYGQEHLIGAEGPLRKFIAQGRLPSMIFWGPPGSGKTTLAEICANSL 85
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
++F LSAV +GV++VR ++E A + RT+LF+DE+HRFNK+QQDS L IE
Sbjct: 86 --DFRFDSLSAVDAGVREVRKSLELAASAQRLDGLRTLLFIDEIHRFNKAQQDSLLHAIE 143
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G +V IGATTENPSF + L+SR +V LN L+ ++ +++ A L+
Sbjct: 144 QGVVVLIGATTENPSFEVNAALMSRMQVYVLNALEDAALQAVVRCA-------LAGDPLI 196
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEIS-AITAAVRVPVKEVKEVEQEDESDGCSPY 361
EV D FL GDAR ALNA+E + ++ VPV + +
Sbjct: 197 APYEVVIDDWAFLLQFSAGDARKALNAVEAALSMVDLSTVPVHLSRTL------------ 244
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ Q K YD+ G HY++ISA KS+RG+D DAA++WLARML+GGE P
Sbjct: 245 --------LERVLQKKLPVYDKKGASHYDVISAFIKSLRGSDPDAALFWLARMLDGGEDP 296
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR+V FASEDVG ADP AL AVS + A +G+PE + LAQ V YLA APKS +
Sbjct: 297 KFIARRMVIFASEDVGNADPYALTLAVSVFHAVEMIGLPEARINLAQGVTYLAGAPKSNA 356
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y+A+ AQ+ + Q VP+HLRNAPTK MKE GYG+GY Y D P +++LP
Sbjct: 357 SYQAINEAQR--HAGMHQELSVPMHLRNAPTKYMKESGYGEGYKYPHDYPEHFVAETYLP 414
Query: 540 PSLE 543
L+
Sbjct: 415 EGLD 418
>gi|345867035|ref|ZP_08819053.1| ATPase associated with various cellular activities family protein
[Bizionia argentinensis JUB59]
gi|344048530|gb|EGV44136.1| ATPase associated with various cellular activities family protein
[Bizionia argentinensis JUB59]
Length = 425
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/437 (43%), Positives = 271/437 (62%), Gaps = 40/437 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP ++++ + Q HL+ PN L + + +PS+I WGPPG GKTTLA N +
Sbjct: 4 PLAERLRPKSLDEYISQAHLVGPNGTLTNQIKQGLIPSLILWGPPGIGKTTLA----NII 59
Query: 183 AVSYK--FVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLP 239
A K F LSA+ SGVKD+R+ ++ A++ + + K +LF+DE+HRF+KSQQDS L
Sbjct: 60 ATESKRPFYTLSAINSGVKDIREVIDKAKQSGGLFTTKNPILFIDEIHRFSKSQQDSLLQ 119
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E G + IGATTENPSF +I LLSRC+V LN D+E LLKRA+++ ++ LS+
Sbjct: 120 AVEKGWVTLIGATTENPSFEVIPALLSRCQVYILNAFNKADLEALLKRAMEE-DSYLSQK 178
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359
++ E L GDAR LN E+ V E ED
Sbjct: 179 ------KITLKETEALLRVSGGDARKLLNIFELI------------VNSHETED------ 214
Query: 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
++T + + Q YD+ GE+HY++ISAL KS+RG+D +AA+Y+LARM+EGGE
Sbjct: 215 ---IVITNELVTQRIQSNTARYDKTGEQHYDIISALIKSIRGSDPNAAVYYLARMIEGGE 271
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+IARRL+ ASED+G A+P AL A + +QA +G PE +IL+QC+ YLA +PKS
Sbjct: 272 DVKFIARRLLILASEDIGNANPTALVIANNTFQAVSTIGHPESRIILSQCITYLACSPKS 331
Query: 480 ISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSF 537
+ Y A+ AQ++++++ + VPL +RNAPTKLMKEIGYG+ Y Y + ++ AKQ F
Sbjct: 332 NAAYMAINHAQQIVKQT--GDLSVPLSIRNAPTKLMKEIGYGENYQYAHSYENNFAKQEF 389
Query: 538 LPPSLEGYKFLDWPKSN 554
LP + KF + P +N
Sbjct: 390 LPQEISNTKFYE-PGNN 405
>gi|326791959|ref|YP_004309780.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
DSM 5427]
gi|326542723|gb|ADZ84582.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
DSM 5427]
Length = 440
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 262/429 (61%), Gaps = 30/429 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ RMRP ++++VGQ HLL + LL A+ +++L S+IF+GPPGTGKTT+AK I N+
Sbjct: 16 SPLASRMRPTKLSEIVGQHHLLEEDKLLYRAIKADKLQSLIFYGPPGTGKTTIAKVIANT 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ L+A TSG ++ AVEDA+ R + K+T++F+DE+HRFNK+QQD+ LP
Sbjct: 76 TKAH--FIVLNATTSGKAEIIKAVEDAKLQRSMTGKKTIIFIDEIHRFNKAQQDALLPYT 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG++V IGATTENP F + L+SR V L PL+ DV+ ++K AV + GL G
Sbjct: 134 EDGTLVLIGATTENPYFEVNRALISRSLVFELKPLETDDVKKIIKEAVYNKERGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ +V DA+++L GDAR ALNA+E++ +T + DG
Sbjct: 190 AYKADVTEDALDYLAMRTAGDARNALNAIELAVMTTS--------------RSEDG---- 231
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ +T+ +E Q K L YD+ G+ HY++ISA KSMRG+D A ++LARM+ GE P
Sbjct: 232 IIHITISVLEECVQKKALHYDKKGDNHYDVISAFIKSMRGSDPQATAHYLARMIAAGEDP 291
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARR+V ASEDVG ADP AL A A +GMPE +IL+Q Y+A APKS +
Sbjct: 292 KFIARRIVICASEDVGNADPQALTVATQAMLAIERIGMPEGRIILSQAALYVAAAPKSNA 351
Query: 482 IYRALGAA-QKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
Y A+ AA V +G VP HLR++ KE+ +G+ Y+Y D P +Q +L
Sbjct: 352 SYMAINAALSDVEHREIGT---VPSHLRDSHYSGAKELNHGQDYLYAHDYPHHYVEQQYL 408
Query: 539 PPSLEGYKF 547
P +L G +
Sbjct: 409 PDALLGISY 417
>gi|331000051|ref|ZP_08323746.1| recombination factor protein RarA [Parasutterella excrementihominis
YIT 11859]
gi|329572935|gb|EGG54555.1| recombination factor protein RarA [Parasutterella excrementihominis
YIT 11859]
Length = 484
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 257/412 (62%), Gaps = 33/412 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ER+RP I++VVGQ HLL P LRSA + S+I WGPPG GKTTLA+ + +
Sbjct: 36 SPLAERLRPKTIDEVVGQKHLLGPGKPLRSAFENAHPHSMILWGPPGVGKTTLARLMAD- 94
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
A F+ +SAV GVKD+RDAVE A R K+ + TV+FVDEVHRF+KSQQD+FLP +
Sbjct: 95 -AFGLPFISISAVLGGVKDIRDAVEKATANREKTGRSTVVFVDEVHRFSKSQQDAFLPHV 153
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G FIGATTENPSF +I+ LLSR V L LK D+E LL RA++ GL
Sbjct: 154 ESGLFTFIGATTENPSFEVISALLSRSTVYVLESLKEEDLEELLHRALEREYLGL----- 208
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+VN +A + L DGDAR LNALE+SA A R +K ++++ +
Sbjct: 209 ----KVNEEAEKILIGLADGDARRFLNALEVSATMAKDR----GIKVIDEK--------F 252
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V + A +D+ G+ Y+ ISALHKS+RG+D DAA+YW+ RML+GG P
Sbjct: 253 V--------RAALPATIRRFDKGGDNFYDQISALHKSVRGSDPDAALYWMCRMLDGGVDP 304
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LYIARRL+R + ED+GLADP + + LG PE + LA V YLA APKS+S
Sbjct: 305 LYIARRLMRMSIEDIGLADPRGMEITTNAVDIYERLGSPEGELALANAVVYLACAPKSVS 364
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSA 533
+Y+A + +++ VP+H+RNAPTKLM+++G G GY Y PD+P +
Sbjct: 365 VYKAFNKMRAFVKQD--GTRPVPMHIRNAPTKLMQKVGNGAGYRYPPDEPGS 414
>gi|429746609|ref|ZP_19279951.1| putative replication-associated recombination protein A
[Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429165845|gb|EKY07872.1| putative replication-associated recombination protein A
[Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 426
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/439 (42%), Positives = 263/439 (59%), Gaps = 37/439 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ERMRP ++ VGQ+HL+ LR + LPS+IFWGPPGTGKTTLA I +
Sbjct: 3 SPLAERMRPTSLAQYVGQEHLVGAQGALRQQIERGLLPSLIFWGPPGTGKTTLANIIAHQ 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA++SG+K+VR+ ++ +++ + + + ++F+DE+HRFNK+QQDS L
Sbjct: 63 S--NRAFYTLSAISSGIKEVREVIDQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF +I LLSRC+V LN + D+E LL A+ + + K+
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFERKDLEQLLHNAI--TQDAILKTK 178
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
++ E L GD R LN E+ PV
Sbjct: 179 -----DIQLQETEALLRLSGGDGRKLLNTFELIVNATPEGEPV----------------- 216
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T D Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 217 ---VITNDSVLRLVQKNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARR++ ASED+G A+P A+ A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 274 VKFIARRMLILASEDIGNANPTAMILANNTFQAVTTIGYPEARIILSQCAIYLASSPKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y+A+ AQ+V++++ + VP+HLRNAPTKLMKE+GYGK Y Y D S A Q +L
Sbjct: 334 ASYKAINKAQQVVKQT--GDLSVPIHLRNAPTKLMKELGYGKDYQYAHDYESNFAFQDYL 391
Query: 539 PPSLEGYKFL---DWPKSN 554
P L+G F D P+ N
Sbjct: 392 PDELQGETFYEPSDNPREN 410
>gi|229845598|ref|ZP_04465724.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
gi|229811465|gb|EEP47168.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
Length = 446
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 182/428 (42%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ +MRP ++ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 132 DGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 -RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK-- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G PL
Sbjct: 231 --IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ ++ + VP HLRNAPT LMKE+GY Y Y D+P +A +++ P
Sbjct: 349 YTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYSAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|448241450|ref|YP_007405503.1| recombination factor protein RarA [Serratia marcescens WW4]
gi|445211814|gb|AGE17484.1| recombination factor protein RarA [Serratia marcescens WW4]
Length = 448
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 260/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+ L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 16 PLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYG 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 76 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+ +L +A++D G GG
Sbjct: 133 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIGQVLDQAMNDKARGF----GG 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
VE+ + L GDAR ALN+LE+ A A + ++ G V
Sbjct: 189 QNVELPAETRRLLSELVGGDARRALNSLEMMADMAEI--------------DAKG----V 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 231 RVLTPQLLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP + A++ + +G E +AQ + YLA APKS ++
Sbjct: 291 YVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + RE + VP HLRNAPTKLMKE+G G Y Y D+P +A +++ P
Sbjct: 351 YTAFKAAMRDAREQADYD--VPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGENYFP 408
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 409 PEMAHTRY 416
>gi|68468917|ref|XP_721517.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
gi|68469463|ref|XP_721246.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
gi|46443155|gb|EAL02439.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
gi|46443437|gb|EAL02719.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
Length = 678
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 278/479 (58%), Gaps = 22/479 (4%)
Query: 76 QTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNIND 135
Q KP AN ++E + +E S ++ K ++ ++ PL+ R+RP +++D
Sbjct: 129 QEKP---LANDIEETKSQKE---SKFLQKAKEIKELKRQASI-----PLAHRLRPKSLDD 177
Query: 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195
GQ+ L+ N LR+ + ++ +PS + WG PG GKT+LA+ I + S KFV LS +
Sbjct: 178 FFGQEKLVGENGALRNIIQADIIPSFLLWGVPGIGKTSLARIIAKTT--SCKFVELSGID 235
Query: 196 SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTEN 255
S K +++ A + S +RT+LF+DE+HRFNK+ QD LPVIE G++ IGATTEN
Sbjct: 236 SNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEKGTLTVIGATTEN 295
Query: 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFL 315
PSF+L LLSR + PL + +L RA+ +VN G + + DA ++
Sbjct: 296 PSFNLNNALLSRMHTFVMEPLTVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYI 355
Query: 316 CSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375
C GD+RVALN LE T + + K D+ V V+ D K +
Sbjct: 356 AELCMGDSRVALNILE----TINAYLSADKFKSTVNADDEQTKKQGVIKVSADLLKPLMK 411
Query: 376 CK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFAS 433
+ H YDR G+ HY++ISA HKS+RG+D +AA+++L +ML GGE PL+I RR++ AS
Sbjct: 412 SRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNAAMFYLVKMLSGGEDPLFIMRRMIVIAS 471
Query: 434 EDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVI 493
ED+GL D L A++ +A F+GMPE +ILA C LALAPKS YRAL AQ +I
Sbjct: 472 EDIGLRDSSCLPFAIAAKEALEFVGMPEGEIILAHCANKLALAPKSTKSYRALRTAQNII 531
Query: 494 RESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPPSLEGYKFLD 549
+E+ + VPLHLRNAPTKLMK++G+G Y Y P+ + K Q + P ++ K L+
Sbjct: 532 KENPDLTKLPVPLHLRNAPTKLMKDLGFGDKYKYNPNYENGKVRQGYFPDGMDPIKLLE 590
>gi|268590184|ref|ZP_06124405.1| replication-associated recombination protein A [Providencia
rettgeri DSM 1131]
gi|291314464|gb|EFE54917.1| replication-associated recombination protein A [Providencia
rettgeri DSM 1131]
Length = 447
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 192/429 (44%), Positives = 268/429 (62%), Gaps = 32/429 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I N
Sbjct: 15 PLAARMRPETLEQYIGQKHLLAEGKPLPRAIKAGHLHSMILWGPPGTGKTTLAEIIGNYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+++E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADIERI--SAVTSGIKEIRESIEKARQNR-SAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L+ +D+E +L +A+ D + GL GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLEENDIEQVLLQALADSSRGL----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + + +GDAR +LN LE+ A A E +S G
Sbjct: 188 QNIVLPDNTRKMVAQLVNGDARRSLNLLEMMADMA--------------EADSQGQR--- 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T D KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 231 -ILTADLLKEVSGERTARFDNKGDRYYDLISALHKSIRGSAPDAALYWFARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQ-NEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
Y A AA I+++ Q + VP HLRNAPTKL+KE+G GK Y Y D+P +A +++
Sbjct: 350 YTAYKAA---IKDAQMQPDYDVPEHLRNAPTKLLKEMGAGKEYRYAHDEPNAYAAGENYF 406
Query: 539 PPSLEGYKF 547
P ++ ++
Sbjct: 407 PEPMQTTRY 415
>gi|406995900|gb|EKE14470.1| hypothetical protein ACD_12C00493G0007 [uncultured bacterium]
Length = 402
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 263/437 (60%), Gaps = 48/437 (10%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+E++RP +++D VGQ+HL+ +R + + ++ S++FWGPPGTGKTTLA+ I +
Sbjct: 4 PLAEQLRPQSLDDFVGQEHLVGKGKPIRRMIENKKVISMVFWGPPGTGKTTLARIIAKYI 63
Query: 183 AVSYKFVCLSAVTSG-VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ F+ SAV G V +VR + +A+K K TVLFVDE+HRFNK+QQD+FLP +
Sbjct: 64 EAN--FIPFSAVAGGGVAEVRKIIAEAKKNYGLFKKTTVLFVDEIHRFNKAQQDAFLPYV 121
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+I IGATTENP F +I PL+SR ++ L L ++ ++KRA+
Sbjct: 122 EDGTITLIGATTENPGFEVIAPLVSRSQIYVLYSLTEEEITTIVKRAIKFY--------- 172
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
+ + +A+E + N +GD R A+NA+E+S S
Sbjct: 173 -PKHKFEKEAVEHIIKNSNGDGRTAINAVELS-------------------------SSL 206
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL A+EA Q K + YD+ G+ HY+ ISA KSMRG++ DA +++LARM++ GE P
Sbjct: 207 SKKITLKVAEEAVQRKAIFYDKKGDWHYDTISAFIKSMRGSNPDATLHYLARMIKAGEDP 266
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
++IARRLV FASED+G A P AL A + QACH +G PE +ILAQ YLA A KSI+
Sbjct: 267 IFIARRLVIFASEDIGNAQPTALVLATTAMQACHMIGWPEAGLILAQTATYLATAKKSIA 326
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK------Q 535
+ AA I E + +PLHLRNAP KLM+ +G+G+G++ P + Q
Sbjct: 327 STNGIMAAMGDIDEK--NLDPIPLHLRNAPNKLMRSLGFGQGHVRYPWKVERETGRKIIQ 384
Query: 536 SFLPPSLEGYKF--LDW 550
++P +L+G K+ +DW
Sbjct: 385 EYMPKNLKGKKYYVVDW 401
>gi|423139388|ref|ZP_17127026.1| replication-associated recombination protein A [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379051942|gb|EHY69833.1| replication-associated recombination protein A [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 447
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 258/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQSR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L P D+E +L +A+ D G G
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTPDDIEQVLDQAMQDKTRGY----GD 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + ++ + +GDAR ALN LE+ A A E+D V
Sbjct: 188 QDIVLPNETRRAIAELVNGDARRALNTLEMMADMA----------------EADDSGTRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LLPAL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAALADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEIAQTRY 415
>gi|425080737|ref|ZP_18483834.1| replication-associated recombination protein A [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425090799|ref|ZP_18493884.1| replication-associated recombination protein A [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428933571|ref|ZP_19007120.1| recombination factor protein RarA [Klebsiella pneumoniae JHCK1]
gi|405605508|gb|EKB78538.1| replication-associated recombination protein A [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405613535|gb|EKB86266.1| replication-associated recombination protein A [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|426304942|gb|EKV67074.1| recombination factor protein RarA [Klebsiella pneumoniae JHCK1]
Length = 447
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERVLDQAMNDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMA----------------ESDDSGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKAEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+ + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAALADARDRPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|374598739|ref|ZP_09671741.1| AAA ATPase central domain protein [Myroides odoratus DSM 2801]
gi|423323068|ref|ZP_17300910.1| hypothetical protein HMPREF9716_00267 [Myroides odoratimimus CIP
103059]
gi|373910209|gb|EHQ42058.1| AAA ATPase central domain protein [Myroides odoratus DSM 2801]
gi|404609800|gb|EKB09162.1| hypothetical protein HMPREF9716_00267 [Myroides odoratimimus CIP
103059]
Length = 425
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 257/426 (60%), Gaps = 35/426 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ER+RP + D V Q HL+ +L + + +PS++FWGPPGTGKTTLA+ +
Sbjct: 3 APLAERVRPQTLADYVSQAHLVGEQGILTKQLQTGFIPSLLFWGPPGTGKTTLAEIMAKE 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
F LSA+ SGVKDVR+ +E A+ + + + +LF+DE+HRF+KSQQDS L
Sbjct: 63 S--QRPFYVLSAINSGVKDVREVIEKAKSNHGLFTARNPILFIDEIHRFSKSQQDSLLAA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF +I LLSRC+V TL+ D+ LL RA++ + SK
Sbjct: 121 VERGWITLIGATTENPSFEVIPALLSRCQVYTLHAFTKEDLRALLDRAIEKDSFLRSK-- 178
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
R+ + F S GD R LN E+ V +D
Sbjct: 179 ---RITLQETEALFRVSG--GDGRKLLNTFELI------------VNATTGDD------- 214
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T D + Q + YD+ GE+HY+++SA KS+RG+D + A+YWLARM+EGGE
Sbjct: 215 --VVLTNDYVMQIVQKNTVLYDKTGEQHYDIVSAFIKSIRGSDPNGAVYWLARMIEGGED 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARRLV ASED+G A+P AL A + +QA +G PE ++L+QC YLA +PKS
Sbjct: 273 VKFIARRLVIAASEDIGNANPTALIMATNTFQAVSVIGYPESRILLSQCAIYLATSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
S Y A+G AQ++++++ + VP+HLRNAPTKLMKE+GYG+ Y Y+ D P+ Q FL
Sbjct: 333 STYMAIGKAQQLVKQT--GDLSVPIHLRNAPTKLMKELGYGEDYKYSHDYPNNFVNQEFL 390
Query: 539 PPSLEG 544
P L G
Sbjct: 391 PTELSG 396
>gi|410097263|ref|ZP_11292245.1| hypothetical protein HMPREF1076_01423 [Parabacteroides goldsteinii
CL02T12C30]
gi|409224581|gb|EKN17513.1| hypothetical protein HMPREF1076_01423 [Parabacteroides goldsteinii
CL02T12C30]
Length = 423
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 195/436 (44%), Positives = 258/436 (59%), Gaps = 36/436 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
+ PL+ER+RP ++D +GQ HL+ ++LR + + R+PS I WGPPG GKTTLA+ I N
Sbjct: 3 NQPLAERLRPKTLDDYIGQKHLVGQGAVLRKMIDAGRVPSFILWGPPGVGKTTLAQIISN 62
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA++SGVKDVRD +E A+ R + +LF+DE+HRF+KSQQDS L
Sbjct: 63 KLEAP--FYTLSAISSGVKDVRDVIEKAKSNRFFNTVSPILFIDEIHRFSKSQQDSLLNA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF +I PLLSRC+V L L +D+ LL +A+ + K +
Sbjct: 121 VETGVVTLIGATTENPSFEVIRPLLSRCQVYVLKSLDKNDLLTLLNKAIKEDIVLKDKDI 180
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
V DA + GDAR LN LE+ + +E E+E D+
Sbjct: 181 ----VLKETDA---MLRYSGGDARKLLNILELV-------ISAEETDEIEITDQK----- 221
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+ Q AYD+ GE HY++ISA KS+RG+D D AIYWLARM+ GGE
Sbjct: 222 ---------VVDRLQENPAAYDKGGEMHYDIISAFIKSIRGSDPDGAIYWLARMVAGGED 272
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
P +IARRLV ASEDVGLA+P AL A +C+ A +G PE +ILA+ YLA +PKS
Sbjct: 273 PEFIARRLVISASEDVGLANPNALLLANACFDALKKIGWPEGRIILAETTVYLACSPKSN 332
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFL 538
S Y A+ A ++ E G N VPLHLRNAPT LMKE+ YGK Y Y D + +Q +L
Sbjct: 333 SAYMAINDALALV-ERTG-NLPVPLHLRNAPTTLMKELDYGKEYKYAHDYKNNFVEQVYL 390
Query: 539 PPSLEGYKFLDWPKSN 554
P ++ F W N
Sbjct: 391 PKEVQDQHF--WKGQN 404
>gi|419802803|ref|ZP_14327986.1| replication-associated recombination protein A [Haemophilus
parainfluenzae HK262]
gi|419844713|ref|ZP_14368000.1| replication-associated recombination protein A [Haemophilus
parainfluenzae HK2019]
gi|385189589|gb|EIF37052.1| replication-associated recombination protein A [Haemophilus
parainfluenzae HK262]
gi|386416639|gb|EIJ31131.1| replication-associated recombination protein A [Haemophilus
parainfluenzae HK2019]
Length = 446
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 266/428 (62%), Gaps = 31/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ GQ HL+ LR A+ + + S+I WGPPGTGKTTLA+ I + +
Sbjct: 15 PLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRI 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+++E A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NAEVERI--SAVTSGVKEIRESIERAKQNRL-ADRQTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I+FIGATTENPSF L LLSR RV L L ++E +L++A+ D GL K
Sbjct: 132 DGTIIFIGATTENPSFELNNALLSRARVYLLKSLTVAEIEQVLQQAISDPERGLGKE--- 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
R+ + + ++ L +GDAR+ALN LE+ V E E + D
Sbjct: 189 -RLVLEENLLQVLAEYVNGDARLALNCLELM---------VDMAPETENGKKLDR----- 233
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL KE + +D+ G+ Y+LISALHKS+RG+ ADAA+YW AR++ G PL
Sbjct: 234 ---TL--LKEVLGERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPL 288
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YLA+APKS ++
Sbjct: 289 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAV 348
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA++ + VP HL NAPT LMKE+GYG Y Y D+P +A +++ P
Sbjct: 349 YNAFNAAKQ--HAKAFPDFDVPPHLCNAPTALMKELGYGAEYRYAHDEPNAYAAGENYFP 406
Query: 540 PSLEGYKF 547
P L+ ++
Sbjct: 407 PELKDTQY 414
>gi|238879198|gb|EEQ42836.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 678
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 278/479 (58%), Gaps = 22/479 (4%)
Query: 76 QTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNIND 135
Q KP AN ++E + +E S ++ K ++ ++ PL+ R+RP +++D
Sbjct: 129 QEKP---LANDIEETKSQKE---SKFLQKAKEIKELKRQASI-----PLAHRLRPKSLDD 177
Query: 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195
GQ+ L+ N LR+ + ++ +PS + WG PG GKT+LA+ I + S KFV LS +
Sbjct: 178 FFGQEKLVGENGALRNIIQADIIPSFLLWGVPGIGKTSLARIIAKTT--SCKFVELSGID 235
Query: 196 SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTEN 255
S K +++ A + S +RT+LF+DE+HRFNK+ QD LPVIE G++ IGATTEN
Sbjct: 236 SNAKRLKEVFVQAENHKNLSGQRTILFLDEIHRFNKAVQDLLLPVIEKGTLTVIGATTEN 295
Query: 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFL 315
PSF+L LLSR + PL + +L RA+ +VN G + + DA ++
Sbjct: 296 PSFNLNNALLSRMHTFVMEPLTVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYI 355
Query: 316 CSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375
C GD+RVALN LE T + + K D+ V V+ D K +
Sbjct: 356 AELCMGDSRVALNILE----TINAYLSADKFKSTVNADDEQTKKQGVIKVSADLLKPLMK 411
Query: 376 CK--HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFAS 433
+ H YDR G+ HY++ISA HKS+RG+D +AA+++L +ML GGE PL+I RR++ AS
Sbjct: 412 SRDFHQFYDRNGDSHYDIISAFHKSVRGSDPNAAMFYLVKMLSGGEDPLFIMRRMIVIAS 471
Query: 434 EDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVI 493
ED+GL D L A++ +A F+GMPE +ILA C LALAPKS YRAL AQ +I
Sbjct: 472 EDIGLRDSSCLPFAIAAKEALEFVGMPEGEIILAHCANKLALAPKSTKSYRALRTAQNII 531
Query: 494 RESVGQNE-GVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAK--QSFLPPSLEGYKFLD 549
+E+ + VPLHLRNAPTKLMK++G+G Y Y P+ + K Q + P ++ K L+
Sbjct: 532 KENPDLTKLPVPLHLRNAPTKLMKDLGFGDKYKYNPNYENGKVRQGYFPDGMDPIKLLE 590
>gi|58040097|ref|YP_192061.1| recombination factor protein RarA [Gluconobacter oxydans 621H]
gi|58002511|gb|AAW61405.1| ATPase associated with chromosome architecture/replication
[Gluconobacter oxydans 621H]
Length = 470
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/422 (45%), Positives = 251/422 (59%), Gaps = 38/422 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL++R+RP + DV GQDHLL P L + L S+I WG PG GKTT+A+ +
Sbjct: 52 PLADRLRPKRLEDVRGQDHLLGPEGTLTRMLERGTLSSLILWGGPGCGKTTIARLLAGRA 111
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ Y + SAV SGV D+R A E+A K + + K T+LFVDE+HRFN++QQD FLP +E
Sbjct: 112 GLFYSQI--SAVFSGVADLRRAFEEADKKQAATGKGTLLFVDEIHRFNRAQQDGFLPYVE 169
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G++V +GATTENPSF L LLSRC+VL LN L +E LL A ++V G
Sbjct: 170 RGTVVLVGATTENPSFALNAALLSRCQVLVLNRLDDASLESLLVHAEEEV---------G 220
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ +A L + DGD R LN +E ++ D S +P
Sbjct: 221 RPLPLDPEARASLRAMADGDGRYLLNMVE----------------QLVALDPSKVLTPR- 263
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
D + + YDR EEHYNLISALHKS+RG+D DAA+YW ARMLEGGE P
Sbjct: 264 ------DLAAILSRRAILYDRDREEHYNLISALHKSLRGSDPDAALYWFARMLEGGEDPR 317
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
YIARRL RFA+EDVG ADP AL AV+ +Q LG PE + LAQ V +LA APKS ++
Sbjct: 318 YIARRLTRFAAEDVGQADPSALPMAVAGWQTYERLGSPEGELALAQVVVHLATAPKSNAV 377
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQSFLPP 540
Y A AA+ + R++ P H+ NAPT LMK+IGYGKGY Y D D + Q++ P
Sbjct: 378 YTAYKAARALARDTGSLMP--PSHILNAPTSLMKDIGYGKGYEYDHDSEDAFSGQNYFPD 435
Query: 541 SL 542
+
Sbjct: 436 GM 437
>gi|398887738|ref|ZP_10642364.1| AAA ATPase [Pseudomonas sp. GM55]
gi|398191883|gb|EJM79057.1| AAA ATPase [Pseudomonas sp. GM55]
Length = 440
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 266/428 (62%), Gaps = 34/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ R+R N+++ VGQ+H+L+ LR A+ L S+IFWGPPG GKTTLA+ ++ V
Sbjct: 12 PLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR-LLAEV 70
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ ++ F +SAV +GVK++R AVE A++ + KRT+LFVDEVHRFNKSQQD+FLP +E
Sbjct: 71 SDAH-FETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVE 129
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+++FIGATTENPSF L LLSR RV L L + L++RA+ + + +G
Sbjct: 130 DGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVQRALTE-----ERGLGK 184
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ ++ + + L S DGD R LN LE ++ A ED S+ + +
Sbjct: 185 RNLTLSDEGFQMLLSAADGDGRRLLNLLENASDLA--------------EDNSEMGTDLL 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ L D + F D+ GE Y+ ISALHKS+RG++ D A+YW ARM++GG PL
Sbjct: 231 QSL-LGDTRRRF-------DKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPL 282
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL+ ++ ++ LG PE + +AQ + YLA APKS ++
Sbjct: 283 YLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAV 342
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A + E G E VPLHLRNAPTKLMK++GYG Y Y D+P +A + + P
Sbjct: 343 YMGFKTALRAAAEH-GSLE-VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP 400
Query: 540 PSLEGYKF 547
LE F
Sbjct: 401 EELEPIPF 408
>gi|354597962|ref|ZP_09015979.1| AAA ATPase central domain protein [Brenneria sp. EniD312]
gi|353675897|gb|EHD21930.1| AAA ATPase central domain protein [Brenneria sp. EniD312]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 261/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL L A+ +L S+I WGPPGTGKTTLA+ I +
Sbjct: 15 PLAARMRPATLEQYIGQQHLLGAGKPLPRAIEVGQLHSMILWGPPGTGKTTLAELIGHYG 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADVERI--SAVTSGIKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L++A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDIEQVLQQAMNDGERGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D L +GDAR ALN+LE+ A ++ EV+ + V
Sbjct: 188 QNIVLPDDTRRMLAELVNGDARRALNSLEMMA----------DMAEVDAQG--------V 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+T KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 230 RTLTSALLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP + A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + R+ + VP HLRNAPT+LMKEIG G Y Y D+P +A +++ P
Sbjct: 350 YTAFKAAMRDARDQPDYD--VPEHLRNAPTRLMKEIGLGAEYRYAHDEPNAYAAGENYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAAARY 415
>gi|336416399|ref|ZP_08596734.1| hypothetical protein HMPREF1017_03842 [Bacteroides ovatus
3_8_47FAA]
gi|423297944|ref|ZP_17276004.1| hypothetical protein HMPREF1070_04669 [Bacteroides ovatus
CL03T12C18]
gi|335938816|gb|EGN00700.1| hypothetical protein HMPREF1017_03842 [Bacteroides ovatus
3_8_47FAA]
gi|392664581|gb|EIY58119.1| hypothetical protein HMPREF1070_04669 [Bacteroides ovatus
CL03T12C18]
Length = 423
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/439 (44%), Positives = 270/439 (61%), Gaps = 37/439 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP +++ +GQ HL+ P ++LR + + R+ S I WGPPG GKTTLA+ I N +
Sbjct: 3 PLAERLRPKTLDEYIGQKHLVGPGAILRKMIDAGRISSFILWGPPGVGKTTLAQIIANKL 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
F LSAVTSGVKDVR+ ++ A+ R S +LF+DE+HRF+KSQQDS L +E
Sbjct: 63 ETP--FYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILFIDEIHRFSKSQQDSLLGAVE 120
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
+G++ IGATTENPSF +I PLLSRC++ L L+ D+ LL+RA+ + + K
Sbjct: 121 NGTVTLIGATTENPSFEVIRPLLSRCQLYVLKSLEKEDLLELLQRAI--TTDAILKE--- 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
++E+ S GDAR LN LE+ V+ E E
Sbjct: 176 RKIELKETTAMLRFSG--GDARKLLNILELV---------------VQSETEE------T 212
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + E Q LAYD+ GE HY++ISA KS+RG+D D AIYWLARM+EGGE P
Sbjct: 213 VVITDEMVTERLQQNPLAYDKDGEMHYDIISAFIKSIRGSDPDGAIYWLARMVEGGEDPA 272
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
+IARRLV A+ED+GLA+P AL A +C+ +G PE + LA+ YLA +PKS S
Sbjct: 273 FIARRLVISAAEDIGLANPNALLLANACFDTLMKIGWPEGRIPLAETTIYLATSPKSNSA 332
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLPP 540
Y A+ A +++R S G N VPLHLRNAPTKLMK++GYG+ Y Y + + KQ FLP
Sbjct: 333 YSAINDALELVR-STG-NLPVPLHLRNAPTKLMKQLGYGQEYKYAHSYEGNFVKQQFLPD 390
Query: 541 SLEGYKFLDW-PKSNTTDK 558
L+ + W P++N ++
Sbjct: 391 ELKDKRI--WQPQNNPAEQ 407
>gi|209520410|ref|ZP_03269172.1| AAA ATPase central domain protein [Burkholderia sp. H160]
gi|209499147|gb|EDZ99240.1| AAA ATPase central domain protein [Burkholderia sp. H160]
Length = 437
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 260/423 (61%), Gaps = 38/423 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP NI++V+GQ HLL PN LR A S + S+I WGPPG GKTTLA+ + +
Sbjct: 10 PLAERLRPRNIDEVIGQTHLLGPNKPLRVAFESGKAHSMILWGPPGVGKTTLARLMAD-- 67
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVKD+R+AVE A+ R ++ T++FVDEVHRFNKSQQD+FLP +E
Sbjct: 68 AFHAEFIALSAVLSGVKDIREAVETAQIHRANGHQ-TLVFVDEVHRFNKSQQDAFLPHVE 126
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G VF+GATTENPSF + + LLSR V L L + LL+RA +++ GL+
Sbjct: 127 SGLFVFVGATTENPSFEVNSALLSRAAVYVLKSLTDDEQRELLERAQEELG-GLT----- 180
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+A L + DGD R LN LEI A AA R E+ DG
Sbjct: 181 ----FTDEARAALIGSADGDGRKLLNNLEIVA-RAAARQTTTEI---------DG----- 221
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
TL + A + +D+ G+ Y+ ISALHKS+RG++ D A+YW RML+GG P
Sbjct: 222 ---TLLGSALAENLRR--FDKGGDAFYDQISALHKSVRGSNPDGALYWFCRMLDGGADPR 276
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A + + LG PE + LAQ + YLA+APKS +
Sbjct: 277 YLARRIVRMAWEDIGLADPRAARITLDAAETYERLGSPEGELALAQAIIYLAVAPKSNAG 336
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A++ + + Q+ VP+HLRNAPTKLMKE+GYG Y Y D+P +A +++LP
Sbjct: 337 YNAYNEARRFVGKD--QSRAVPVHLRNAPTKLMKELGYGHDYRYAHDEPDAYAAGETYLP 394
Query: 540 PSL 542
+
Sbjct: 395 DGM 397
>gi|393780838|ref|ZP_10369044.1| MgsA AAA+ ATPase, C-terminal domain protein [Capnocytophaga sp.
oral taxon 412 str. F0487]
gi|392607952|gb|EIW90818.1| MgsA AAA+ ATPase, C-terminal domain protein [Capnocytophaga sp.
oral taxon 412 str. F0487]
Length = 426
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 264/439 (60%), Gaps = 37/439 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
+PL+ERMRP ++ VGQ+HL+ LR + LPS+IFWGPPGTGKTTLA I +
Sbjct: 3 SPLAERMRPTSLAQYVGQEHLVGTQGALRQQIERGLLPSLIFWGPPGTGKTTLANIIAHQ 62
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+ F LSA++SG+K+VR+ ++ +++ + + + ++F+DE+HRFNK+QQDS L
Sbjct: 63 S--NRTFYTLSAISSGIKEVREVIDQSKQSGGLFTTQNPIVFIDEIHRFNKTQQDSLLQA 120
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G I IGATTENPSF +I LLSRC+V LN + D+E LL A+ + + K+
Sbjct: 121 VEKGWITLIGATTENPSFEVIPALLSRCQVYILNAFERKDLEQLLHNAI--TQDAILKT- 177
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
+E+ E L GD R LN E+ PV
Sbjct: 178 --KNIELQE--TEALLRLSGGDGRKLLNTFELIVNATPEGEPV----------------- 216
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
++T D Q + YD+ GE+HY++ISA KS+RG+D + A+YWLARM+EGGE
Sbjct: 217 ---VITNDSVLRLVQKNTVLYDKTGEQHYDIISAFIKSIRGSDPNGAVYWLARMIEGGED 273
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
+IARR++ ASED+G A+P A+ A + +QA +G PE +IL+QC YLA +PKS
Sbjct: 274 VKFIARRMLILASEDIGNANPTAMILANNTFQAVTTIGYPEARIILSQCAIYLASSPKSN 333
Query: 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFL 538
+ Y+A+ AQ+V++++ + VP+HLRNAPTKLMKE+GYGK Y Y D S A Q +L
Sbjct: 334 ASYKAINKAQQVVKQT--GDLSVPIHLRNAPTKLMKELGYGKDYQYAHDYESNFAFQDYL 391
Query: 539 PPSLEGYKFL---DWPKSN 554
P L+G F D P+ N
Sbjct: 392 PDELQGETFYEPSDNPREN 410
>gi|325105535|ref|YP_004275189.1| ATPase AAA [Pedobacter saltans DSM 12145]
gi|324974383|gb|ADY53367.1| AAA ATPase central domain protein [Pedobacter saltans DSM 12145]
Length = 426
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 259/428 (60%), Gaps = 34/428 (7%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ PL+ERMRP N+++ GQ HL+ P ++LR A+ +PS+IFWGPPG GKTTL+ I
Sbjct: 2 ITREPLAERMRPKNLDEYTGQKHLVGPGAVLRKAIDKGNIPSMIFWGPPGVGKTTLSFII 61
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
S F LSA+ SGVKDVRD ++ A+ + + VLF+DE+HRF+KSQQDS L
Sbjct: 62 AQSQ--DRPFFSLSAINSGVKDVRDVIDKAKMYKKAGHPIPVLFIDEIHRFSKSQQDSLL 119
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E G + IGATTENPSF +I+ LLSRC+V L L D+ LL RA+ ++ L +
Sbjct: 120 GAVERGYVTLIGATTENPSFEVISALLSRCQVYILENLSEEDLLGLLNRAMI-LDPILQE 178
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
E+ E L GD R LN E+ + AA P +V+
Sbjct: 179 K------EITLKETEALLRLSGGDGRKLLNIFEL-LVNAA---PTDKVE----------- 217
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
+T + Q + YD+AGE+HY++ISA KS+RG+D +AA+YWLARM+EGG
Sbjct: 218 ------ITNEFVLANVQQQMALYDKAGEQHYDIISAFIKSIRGSDPNAAVYWLARMIEGG 271
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
E P +IARRL+ ASED+G A+P AL A +C+QA + +G PE +IL+Q V YLA + K
Sbjct: 272 EDPSFIARRLLILASEDIGNANPNALLLANNCFQAVNIIGFPESRIILSQTVTYLASSAK 331
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQS 536
S + Y A+ AQ +++++ + VPLHLRNAPTKLMKEIGYG+ Y Y + Q
Sbjct: 332 SNAAYEAINQAQSLVKQT--GDLPVPLHLRNAPTKLMKEIGYGEEYKYAHAYEGNFVDQE 389
Query: 537 FLPPSLEG 544
F P L G
Sbjct: 390 FFPQKLSG 397
>gi|218291271|ref|ZP_03495247.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218238819|gb|EED06031.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 263/424 (62%), Gaps = 27/424 (6%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APL+ RMRP +++++VG ++L+ + +LR + +RL SII +GPPGTGKTT+A+ I
Sbjct: 16 APLAYRMRPRSLDEMVGHENLVGRDGILRRMIERDRLMSIILYGPPGTGKTTIAEVIARQ 75
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+F+ L+AVTSG+ DVR AVE AR+ R +RTV+F+DE+HRFNK+QQD+ LP +
Sbjct: 76 TKA--RFIPLNAVTSGIADVRKAVETAREERDLYGRRTVVFLDEIHRFNKNQQDALLPHV 133
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I +GATTENP F + LLSR V L PL P D+ L+ A+ D GL G
Sbjct: 134 EAGLISLVGATTENPYFDVNAALLSRSHVFRLEPLSPDDIGRLVDMAIADEERGL----G 189
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
RV ++ DA L GDAR ALN LE++A A V + E++ P
Sbjct: 190 RMRVRLHPDARRVLTLQARGDARRALNLLELAAFAA----------RVGPDGETEIGVPE 239
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
V D A EA YDRAG++HY+ ISA KS+RG+D +AA+ WLA+MLEGGE P
Sbjct: 240 V-----DAALEATGGPR--YDRAGDDHYDTISAFIKSVRGSDVNAAMLWLAKMLEGGEDP 292
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+IARRL+ A+EDVG+ADP AL AVS +QA +GMPE ++LA+ AYLA APKS
Sbjct: 293 AFIARRLMILAAEDVGMADPSALPIAVSGWQAAMAIGMPEARIVLAEVTAYLAKAPKSNH 352
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLP 539
Y A+ A +R + VPLHLR+ K K +G+G+GY+Y D P +Q++ P
Sbjct: 353 AYMAINRALDDVRSGLPLE--VPLHLRSTAYKGAKALGHGEGYLYPHDYPGHYVEQNYWP 410
Query: 540 PSLE 543
+E
Sbjct: 411 IGVE 414
>gi|149928209|ref|ZP_01916454.1| AAA ATPase, central region [Limnobacter sp. MED105]
gi|149823100|gb|EDM82340.1| AAA ATPase, central region [Limnobacter sp. MED105]
Length = 450
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 258/430 (60%), Gaps = 37/430 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ER+RP + +VVGQ HLL L + S+I WGPPG GKTTLA+ +
Sbjct: 27 PLAERIRPSTLAEVVGQTHLLGAGKPLTLLFEQQHVHSLILWGPPGVGKTTLARLLAG-- 84
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
A +F+ LSAV SGVK++R A++ A + ++ K T+LF+DE+HRFNKSQQD+ LP +E
Sbjct: 85 AAKAQFIALSAVLSGVKEIRAAIDQASEY-ARAGKSTILFIDEIHRFNKSQQDALLPFVE 143
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G + FIGATTENPSF + + LLSR +V LN L +D LLKRA ++ G
Sbjct: 144 SGLVTFIGATTENPSFEVNSALLSRSQVYVLNSLNSNDFTHLLKRAQAEL---------G 194
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
T + V++DA E LCS DGDAR LN +EI+ + + ++ G +
Sbjct: 195 TEIAVDNDAFEALCSYADGDARRFLNLVEITLL----------------QTKAQGLNK-- 236
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ L K+ + +D+ G+ Y+ ISALHKS+RG+D DAA+YW RML+GG P
Sbjct: 237 --LDLPALKQIAPSQIRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGADPR 294
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR A ED+GLADP A A Q LG PE + LAQCV YLA+A KS +
Sbjct: 295 YMARRIVRMAWEDIGLADPRAFTIANEAAQTYERLGSPEGELALAQCVLYLAIAAKSNAG 354
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A A +++S VP+HLRNAPTKLMKE+G+G Y Y D+ +A +++ P
Sbjct: 355 YNAYKQAMAHVKQS--STMPVPMHLRNAPTKLMKELGHGSAYRYAHDEEAGHAAGENYWP 412
Query: 540 PSLEGYKFLD 549
++ KF +
Sbjct: 413 EGMQVPKFYE 422
>gi|333926526|ref|YP_004500105.1| AAA ATPase [Serratia sp. AS12]
gi|333931479|ref|YP_004505057.1| ATPase AAA [Serratia plymuthica AS9]
gi|386328349|ref|YP_006024519.1| AAA ATPase [Serratia sp. AS13]
gi|333473086|gb|AEF44796.1| AAA ATPase central domain protein [Serratia plymuthica AS9]
gi|333490586|gb|AEF49748.1| AAA ATPase central domain protein [Serratia sp. AS12]
gi|333960682|gb|AEG27455.1| AAA ATPase central domain protein [Serratia sp. AS13]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 259/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+ L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYG 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+ +L +A+ D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLDQAMKDNSRGF----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + L GDAR ALN+LE+ A A + ++ G +
Sbjct: 188 QNIELPEETRRMLSELVGGDARRALNSLEMMADMAEI--------------DAKG----I 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 230 RVLTPSLLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP + A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + RE + VP HLRNAPTKLMKE+G G Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMRDAREMADYD--VPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGEDYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAKTRY 415
>gi|238893953|ref|YP_002918687.1| recombination factor protein RarA [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|386034108|ref|YP_005954021.1| recombination factor protein RarA [Klebsiella pneumoniae KCTC 2242]
gi|402781561|ref|YP_006637107.1| Holliday junction DNA helicase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|424829903|ref|ZP_18254631.1| putative DNA recombination-associated ATPase RarA [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|238546269|dbj|BAH62620.1| putative polynucleotide enzyme [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|339761236|gb|AEJ97456.1| recombination factor protein RarA [Klebsiella pneumoniae KCTC 2242]
gi|402542438|gb|AFQ66587.1| Holliday junction DNA helicase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|414707328|emb|CCN29032.1| putative DNA recombination-associated ATPase RarA [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+P L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 SADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMNDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A ESD V
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMA----------------ESDDSGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKAEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA R+ + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAALADARDRPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|386825102|ref|ZP_10112229.1| recombination factor protein RarA [Serratia plymuthica PRI-2C]
gi|386377959|gb|EIJ18769.1| recombination factor protein RarA [Serratia plymuthica PRI-2C]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 259/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+ L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYG 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+ +L +A+ D + G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLDQAMKDNSRGF----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + L GDAR ALN+LE+ A A + ++ G +
Sbjct: 188 QNIELPEETRRMLSELVGGDARRALNSLEMMADMAEI--------------DAKG----I 229
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T KE + +D G+ +Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 230 RVLTPSLLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP + A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + RE + VP HLRNAPTKLMKE+G G Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMRDAREMADYD--VPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGEDYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEMAKTRY 415
>gi|365969776|ref|YP_004951338.1| replication-associated recombination protein A [Enterobacter
cloacae EcWSU1]
gi|365748689|gb|AEW72916.1| Replication-associated recombination protein A [Enterobacter
cloacae EcWSU1]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 258/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTIFFIGATTENPSFELNSALLSRARVYLLKSLTVEDIEQVLTQAMNDNARGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + +GDAR ALN LE+ A A V K V P
Sbjct: 188 QDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDASGKRV-----------LKP-- 234
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
AL+T E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 235 ALLT-----EIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A+S + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+P +A + + P
Sbjct: 350 YTAFKAAMSDARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFP 407
Query: 540 PSLEGYKF 547
+ ++
Sbjct: 408 QEMAQTRY 415
>gi|255534679|ref|YP_003095050.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
gi|255340875|gb|ACU06988.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
Length = 442
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/447 (42%), Positives = 272/447 (60%), Gaps = 34/447 (7%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
+T ++ + + PL+E+MRP +++V GQ+HL +R + ++ L S+IFWGPPGTGKT
Sbjct: 13 TTISILISNTPLAEQMRPKTLDEVRGQEHLTGEKGTVRKMLENDTLNSLIFWGPPGTGKT 72
Query: 173 TLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS 232
T+A+ I S KF LSAV+SGVKDVR+ +E+A+K + S K +LF+DE+HRFNKS
Sbjct: 73 TIAEII--SEQSGRKFFKLSAVSSGVKDVREVIEEAKKQNLFSGKSPILFIDEIHRFNKS 130
Query: 233 QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
QQDS L +E G IV IGATTENPSF +++ LLSR +V L L +E L + ++ +
Sbjct: 131 QQDSLLHAVEKGWIVLIGATTENPSFEVVSALLSRSQVYVLKSLSYEKLEELAELSLKNY 190
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
N + GT + E GDAR +N++E + K +++
Sbjct: 191 N-----ASHGTEFRIKDK--EAFIQYSGGDARKLINSVE---------NVLNNFKNSDKK 234
Query: 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLA 412
+ S+ D E Q YD+ GE+HY++ISA KSMRG+D + A+YWLA
Sbjct: 235 EISNA-----------DVLEVLQETMALYDKNGEQHYDIISAFIKSMRGSDPNGAVYWLA 283
Query: 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAY 472
RML GGE +IARR++ A+ED+GLA+P AL A +C+QA + +G PE +IL++ Y
Sbjct: 284 RMLVGGEDVKFIARRMLILAAEDIGLANPNALVIANNCFQAVNVIGNPEARIILSETTVY 343
Query: 473 LALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDD 530
LA++PKS S Y A+ A ++++ N VPLHLRNAPTKLMK++ YGK Y Y + +
Sbjct: 344 LAVSPKSNSTYLAINEAMAFVKKT--GNLPVPLHLRNAPTKLMKDLNYGKDYDYAHSHEG 401
Query: 531 PSAKQSFLPPSLEGYKFLDWPKSNTTD 557
FLP + G KF + P +N+T+
Sbjct: 402 NFVDLEFLPDEISGEKFYN-PGNNSTE 427
>gi|325982389|ref|YP_004294791.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212]
gi|325531908|gb|ADZ26629.1| MgsA AAA+ ATPase domain-containing protein [Nitrosomonas sp. AL212]
Length = 444
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 192/434 (44%), Positives = 259/434 (59%), Gaps = 36/434 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
P APL+E +RP ++DV+GQ+HLL LR A S + S+I WGPPGTGKT+LA+ +
Sbjct: 16 TPQAPLAELLRPKQLSDVIGQNHLLGAGKPLRLAFESGKPHSMILWGPPGTGKTSLARLM 75
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
S +F+ LSAV SG+KD+R+A+E+AR ++ + T+LFVDEVHRFNKSQQD+FL
Sbjct: 76 --STEFDCEFISLSAVLSGIKDIRNAIEEARSTLQQTGRHTILFVDEVHRFNKSQQDAFL 133
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
P IE G I FIGATTENPSF + LLSR +V L L H++ LL+ A + + + L
Sbjct: 134 PHIEQGLITFIGATTENPSFEINNALLSRVQVYILTVLSEHELSCLLEHAQNQMPDNL-- 191
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+ + ++ + L DGDAR LN LE TAA + ++
Sbjct: 192 -------QFSDESRKLLIEFADGDARRLLNLLE-QIHTAAKTESITQI------------ 231
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
S + L TL +F D+ G+E Y+ ISALHKS+RG+ DAA+YWL RML+GG
Sbjct: 232 SKDIVLNTLSRNMRSF-------DKGGDEFYDQISALHKSVRGSSPDAALYWLCRMLDGG 284
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
LYI RRL+R A ED+GLADP AL + + LG PE + LAQ YLA A K
Sbjct: 285 ADALYIGRRLIRMAVEDIGLADPRALRLTLDACETYERLGTPEGELALAQATLYLACAAK 344
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S + Y A A+ ++ + ++ VP+ LRNAPTKLM++IGYG YIY D P +A Q
Sbjct: 345 SNAAYLAYKKARSLVAQD--KSRRVPIQLRNAPTKLMQDIGYGNAYIYAHDCPEAYAAGQ 402
Query: 536 SFLPPSLEGYKFLD 549
S+ P + F +
Sbjct: 403 SYFPDEMPEVSFYE 416
>gi|417732346|ref|ZP_12381015.1| ATPase family associated with various cellular activities family
protein [Shigella flexneri 2747-71]
gi|332760457|gb|EGJ90746.1| ATPase family associated with various cellular activities family
protein [Shigella flexneri 2747-71]
Length = 447
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/428 (45%), Positives = 257/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + D + +GDAR ALN LE+ A A V K V ++E E G
Sbjct: 188 QDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLKLELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+ +A + + P
Sbjct: 350 YTAFKAALADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEIAQTRY 415
>gi|440230294|ref|YP_007344087.1| AAA ATPase [Serratia marcescens FGI94]
gi|440051999|gb|AGB81902.1| AAA ATPase [Serratia marcescens FGI94]
Length = 448
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 259/428 (60%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + +GQ HLL+P L A+ + +L S+I WGPPGTGKTTLA+ I
Sbjct: 16 PLAARMRPTTLAQYIGQQHLLAPGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYG 75
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSG+K++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 76 QADVERI--SAVTSGIKEIREAIERARQNR-DAGRRTILFVDEVHRFNKSQQDAFLPHIE 132
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+ +L +A++D G GG
Sbjct: 133 DGTITFIGATTENPSFELNSALLSRARVYLLKALTADDIGQVLDQAMNDKERGF----GG 188
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + L GDAR ALN+LE+ A A + + V
Sbjct: 189 QNIELPDETRHVLSELVGGDARRALNSLEMMADMAEIN------------------AKGV 230
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
++T + KE + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 231 RVLTPELLKEVSGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 290
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL+ ASEDVG ADP + A++ + +G E +AQ + YLA APKS ++
Sbjct: 291 YVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 350
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA + +E + VP HLRNAPTKLMKE+G G Y Y D+P +A +++ P
Sbjct: 351 YTAFKAAMRDAKEMADYD--VPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGENYFP 408
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 409 PQMANTRY 416
>gi|319787147|ref|YP_004146622.1| ATPase AAA [Pseudoxanthomonas suwonensis 11-1]
gi|317465659|gb|ADV27391.1| AAA ATPase central domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 436
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/407 (48%), Positives = 252/407 (61%), Gaps = 30/407 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ERMRP +++++VGQ LL+P S LR AV R+ S+I WGPPG GKTTL+ ++ +
Sbjct: 3 PLAERMRPRSLDEMVGQRRLLAPGSALRRAVEGGRVHSMILWGPPGCGKTTLS--LLLAQ 60
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+F +SAV SG+ +VR + +A + R + +RTVLFVDEVHRFNK+QQD+FLP IE
Sbjct: 61 YADAEFRAISAVLSGLPEVRQVLAEAGQ-RFDAGRRTVLFVDEVHRFNKTQQDAFLPHIE 119
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
GSIVF+GATTENPSF L + LLSRCRV L + D+ LKRA+DD GL GG
Sbjct: 120 RGSIVFVGATTENPSFELNSALLSRCRVHVLEAVSADDIVDALKRALDDEERGL----GG 175
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ V A+ + DGD R AL LEI+A AA DE +
Sbjct: 176 QGIVVEEGALREIAGAADGDVRRALTLLEIAAELAA--------------DEGGHITEST 221
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L L D F D+ GE+ Y+ ISALHKS+R ++ DAA+YWLARML+GG P
Sbjct: 222 LLQVLADRTRRF-------DKGGEQFYDQISALHKSVRSSNPDAAVYWLARMLDGGCDPA 274
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARRL R A ED+GLADP AL ++ + LG PE ++ LAQ YLA KS +
Sbjct: 275 YLARRLTRMAVEDIGLADPRALQMSIDAWDTFERLGRPEGDLALAQVAIYLASTAKSNAA 334
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD 529
Y A AA+ + + G E VP+HLRNAPTKLMK++GY KGY Y D
Sbjct: 335 YAAYNAAKADVHQ-YGTAE-VPMHLRNAPTKLMKQLGYNKGYQYDHD 379
>gi|34496831|ref|NP_901046.1| recombination factor protein RarA [Chromobacterium violaceum ATCC
12472]
gi|34102686|gb|AAQ59051.1| probable ATPase associated with chromosome architecture
[Chromobacterium violaceum ATCC 12472]
Length = 443
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/435 (43%), Positives = 260/435 (59%), Gaps = 40/435 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179
P PL+E +RP ++ V+GQ HL+ P L AV S + S+I WGPPG GKTTLA+ +
Sbjct: 9 PQKPLAEALRPQALDQVIGQQHLIGPGKPLSLAVASGKPHSMILWGPPGVGKTTLARILA 68
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
S +F+ +SAV +GVKD+R+AVE A + +S +RT+LFVDEVHRFNKSQQD+FLP
Sbjct: 69 ASFDA--EFIPISAVFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQDAFLP 126
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRA-VDDVNNGLSK 298
+E G I FIGATTENPSF + + LLSR +V LN L +++ L RA + +GL+
Sbjct: 127 FVESGLITFIGATTENPSFEVNSALLSRAQVYVLNSLSEDELKQLFARARTEGALDGLN- 185
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGC 358
+ A+ L DGDAR LN LE + A R
Sbjct: 186 --------FDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARG----------------- 220
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418
VA + +E +D+ G+ Y+ ISALHKS+RG++ DAA+YWL+RML+GG
Sbjct: 221 ---VADIDPGFLEEVLTLNARRFDKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDGG 277
Query: 419 EQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPK 478
P Y+ARR+VR A ED+GLADP A+ A LG PE + L Q V YLA+A K
Sbjct: 278 ADPRYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYLAVAAK 337
Query: 479 SISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQ 535
S + Y+A A+ +++ ++ VP+HLRNAPT+LMKE+GYG Y Y D+P +A +
Sbjct: 338 SNAGYKAYNEARAFVKQD--KSRPVPVHLRNAPTRLMKELGYGHAYRYAHDEPHGYAAGE 395
Query: 536 SFLPPSLEGYKFLDW 550
++LP EG + ++W
Sbjct: 396 TYLP---EGLEDIEW 407
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,841,238,608
Number of Sequences: 23463169
Number of extensions: 375155042
Number of successful extensions: 1511673
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5437
Number of HSP's successfully gapped in prelim test: 23305
Number of HSP's that attempted gapping in prelim test: 1468434
Number of HSP's gapped (non-prelim): 35997
length of query: 558
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 410
effective length of database: 8,886,646,355
effective search space: 3643525005550
effective search space used: 3643525005550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)