BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008664
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 253/428 (59%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAXXXXXXXXXXXXXXXXSDGCSPYV 362
+ + + + +GDAR ALN LE+ A A D V
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEV----------------DDSGKRV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L E + +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 232 LKPEL--LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+ +A + + P
Sbjct: 350 YTAFKAALADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEIAQTRY 415
>pdb|3BGE|A Chain A, Crystal Structure Of The C-terminal Fragment Of Aaa+atpase
From Haemophilus Influenzae
pdb|3BGE|B Chain B, Crystal Structure Of The C-terminal Fragment Of Aaa+atpase
From Haemophilus Influenzae
Length = 201
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 5/166 (3%)
Query: 385 GEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLAL 444
G+ Y+LISALHKS+RG+ DAA+YW AR+L G PLY+ARRL+ ASEDVG ADP A+
Sbjct: 4 GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAM 63
Query: 445 NQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVP 504
A++ + +G E +AQ + YL++APKS ++Y A A++ ++ + VP
Sbjct: 64 QVALAAWDCFTRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYD--VP 121
Query: 505 LHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLPPSLEGYKF 547
HLRNAPT LMKE+GYG Y Y D+P +A +++ PP L+ ++
Sbjct: 122 PHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFPPELKDTQY 167
>pdb|3CTD|A Chain A, Crystal Structure Of A Putative Aaa Family Atpase From
Prochlorococcus Marinus Subsp. Pastoris
pdb|3CTD|B Chain B, Crystal Structure Of A Putative Aaa Family Atpase From
Prochlorococcus Marinus Subsp. Pastoris
Length = 213
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 12/197 (6%)
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ ++ L A+++ Q K++ YD+ G+ H+++ISA KS+RG+D DA +YWLA M+E GE P
Sbjct: 9 LVVIDLAIAEDSIQKKNIVYDKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDP 68
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
+I RRL+ A ED+GLADP A+ SC A +G PE L+Q YLA++PKS S
Sbjct: 69 NFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYLAISPKSNS 128
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPSAKQSFLPPS 541
A + + +V VP HL+N + + Y ++ +Q +LP
Sbjct: 129 TKSIFKAMEAIKATNVSL---VPNHLKNNASNYLNPHNYQGKWL--------QQEYLPTD 177
Query: 542 LEGYKFLDWPKSNTTDK 558
L+G KF PK + +K
Sbjct: 178 LQGIKFWK-PKDSGWEK 193
>pdb|2R9G|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|B Chain B, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|C Chain C, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|D Chain D, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|E Chain E, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|F Chain F, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|G Chain G, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|H Chain H, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|I Chain I, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|J Chain J, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|K Chain K, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|L Chain L, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|M Chain M, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|N Chain N, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|O Chain O, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
pdb|2R9G|P Chain P, Crystal Structure Of The C-Terminal Fragment Of Aaa Atpase
From Enterococcus Faecium
Length = 204
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 379 LAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGL 438
L +D+ G+ HY++ISA KS+RG+D DAA+++LAR++E G+ I RRL+ ED+GL
Sbjct: 5 LTHDKNGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAGDLAS-ICRRLMVIGYEDIGL 63
Query: 439 ADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVG 498
+P A + V+ A LG+PE + LA V L L+PKS S Y AL AA IRE G
Sbjct: 64 GNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKSNSAYMALDAALADIRE--G 121
Query: 499 QNEGVPLHLRNAPTKLMKEIGYGKGYIYTP--DDPSAKQSFLPPSLEGYKF 547
+ VP HLR++ K K + G GY Y D Q +LP L+ ++
Sbjct: 122 KAGDVPDHLRDSHYKGAKSLNRGVGYQYPHHFDQAWVNQQYLPDKLKNAQY 172
>pdb|2QW6|A Chain A, Crystal Structure Of The C-terminal Domain Of An Aaa
Atpase From Enterococcus Faecium Do
pdb|2QW6|B Chain B, Crystal Structure Of The C-terminal Domain Of An Aaa
Atpase From Enterococcus Faecium Do
pdb|2QW6|C Chain C, Crystal Structure Of The C-terminal Domain Of An Aaa
Atpase From Enterococcus Faecium Do
pdb|2QW6|D Chain D, Crystal Structure Of The C-terminal Domain Of An Aaa
Atpase From Enterococcus Faecium Do
Length = 112
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 379 LAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGL 438
L +D+ G+ HY++ISA KS+RG+D DAA+++LAR++E G+ I RRL+ ED+GL
Sbjct: 5 LTHDKNGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAGDLA-SICRRLMVIGYEDIGL 63
Query: 439 ADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+P A + V+ A LG+PE + LA V L L+PKS
Sbjct: 64 GNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKS 104
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 23/230 (10%)
Query: 112 DSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGK 171
+ + V P E+ RP ++D+VGQ+H++ L+ V + +P ++F GPPG GK
Sbjct: 3 EEIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKR---LKHYVKTGSMPHLLFAGPPGVGK 59
Query: 172 TTLAKAIVNSV---AVSYKFVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEV 226
TT A A+ + + F+ L+A G+ +R+ V++ AR + ++F+DE
Sbjct: 60 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEA 119
Query: 227 HRFNKSQQDSFLPVIE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284
+ Q + +E ++ FI + N S +I P+ SRC + PL+ D+
Sbjct: 120 DALTQDAQQALRRTMEMFSSNVRFILSC--NYSSKIIEPIQSRCAIFRFRPLRDEDIAKR 177
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
L+ + N GL E+ + ++ + +GD R A+N L+ +A
Sbjct: 178 LRYIAE--NEGL---------ELTEEGLQAILYIAEGDMRRAINILQAAA 216
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-AV 184
E+ RP +++VVGQD ++ L+ V +P ++F GPPGTGKT A A+ +
Sbjct: 9 EKYRPRTLDEVVGQDEVIQR---LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
Query: 185 SYK--FVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+++ F+ ++A G+ VR +++ AR + ++F+DE Q +
Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125
Query: 241 IE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E S FI + N +I P+ SRC V P+ E + KR ++ + +
Sbjct: 126 MEMYSKSCRFILSC--NYVSRIIEPIQSRCAVFRFKPVPK---EAMKKRLLE-----ICE 175
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
G V++ D +E L GD R A+NAL+ +A
Sbjct: 176 KEG---VKITEDGLEALIYISGGDFRKAINALQGAA 208
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-AV 184
E+ RP +++VVGQD ++ L+ V +P ++F GPPGTGKT A A+ +
Sbjct: 9 EKYRPRTLDEVVGQDEVIQR---LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
Query: 185 SYK--FVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+++ F+ ++A G+ VR +++ AR + ++F+DE Q +
Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125
Query: 241 IE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E S FI + N +I P+ SRC V P+ E + KR ++ + +
Sbjct: 126 MEMYSKSCRFILSC--NYVSRIIEPIQSRCAVFRFKPVPK---EAMKKRLLE-----ICE 175
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
G V++ D +E L GD R A+NAL+ +A
Sbjct: 176 KEG---VKITEDGLEALIYISGGDFRKAINALQGAA 208
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 35/232 (15%)
Query: 113 STTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT 172
ST + P E+ RP +++V GQ+ +++ +R V +LP ++F+GPPGTGKT
Sbjct: 4 STEKRSKENLPWVEKYRPETLDEVYGQNEVITT---VRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 173 TLAKAIVNSV-AVSYKFVCLSAVTS---GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVH 227
+ A+ + +Y + L S G+ VR+ ++D A ++ S ++ +DE
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEAD 120
Query: 228 RFNKSQQDSFLPVIEDGSIVFIGATTENPSF-------HLITP-LLSRCRVLTLNPLKPH 279
+ Q++ VIE T+N F H +TP LLS+C PL
Sbjct: 121 AMTNAAQNALRRVIE--------RYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQE 172
Query: 280 DVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+E R + +V + +++++ +A + L +GD R LN L+
Sbjct: 173 AIE----RRIANV-------LVHEKLKLSPNAEKALIELSNGDMRRVLNVLQ 213
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP ++++ +GQ+++ SL A + L ++ GPPG GKTTLA I + + +
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
VTSG V+ D + + VLF+DE+HR NK+ ++ IED
Sbjct: 79 IH------VTSGPVLVKQG--DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130
Query: 246 I--------------------VFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEIL 284
I +GATT S L +PL SR +L L+ +++ +
Sbjct: 131 IDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEI 188
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+KRA ++ VE+ A E + G R+A+
Sbjct: 189 IKRAASLMD-----------VEIEDAAAEMIAKRSRGTGRIAIR 221
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP ++++ +GQ+++ SL A + L ++ GPPG GKTTLA I + + +
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
VTSG V+ D + + VLF+DE+HR NK+ ++ IED
Sbjct: 79 IH------VTSGPVLVKQG--DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130
Query: 246 I--------------------VFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEIL 284
I +GATT S L +PL SR +L L+ +++ +
Sbjct: 131 IDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEI 188
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+KRA ++ VE+ A E + G R+A+
Sbjct: 189 IKRAASLMD-----------VEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 37/219 (16%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP--SIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP +++ +GQ+ L + A + + P ++ +GPPG GKTTLA I + + V+
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
+ VTSG + + A L + +LF+DE+HR ++ ++ P +ED
Sbjct: 66 LR------VTSG-PAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFV 118
Query: 246 I-VFIGA-------TTENPSFHLI----------TPLLSRCRVLTLNPLKPHDVEILLKR 287
+ + IG E P F LI PLLSR + VE L
Sbjct: 119 MDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI----------VEHLEYY 168
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
+++ G+ + V + +A + G RVA
Sbjct: 169 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVA 207
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP ++++ +GQ+++ SL A + L ++ GPPG G+TTLA I + + +
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
VTSG V+ D + + VLF+DE+HR NK+ ++ IED
Sbjct: 79 IH------VTSGPVLVKQG--DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130
Query: 246 I--------------------VFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEIL 284
I +GATT S L +PL SR +L L+ +++ +
Sbjct: 131 IDIMIGKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEI 188
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+KRA ++ VE+ A E + G R+A+
Sbjct: 189 IKRAASLMD-----------VEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 37/219 (16%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP--SIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP +++ +GQ+ L + A + + P ++ +GPPG GKTTLA I + + V+
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
+ VTSG + + A L + +LF+DE+HR ++ ++ P +ED
Sbjct: 66 LR------VTSG-PAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFV 118
Query: 246 I-VFIGA-------TTENPSFHLI----------TPLLSRCRVLTLNPLKPHDVEILLKR 287
+ + IG E P F LI PLLSR + VE L
Sbjct: 119 MDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI----------VEHLEYY 168
Query: 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
+++ G+ + V + +A + G RVA
Sbjct: 169 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVA 207
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP ++++ +GQ+++ SL A + L ++ GPPG GKTTLA I + + +
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
VTSG V+ D + + VLF+DE+HR NK+ ++ IED
Sbjct: 79 IH------VTSGPVLVKQG--DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130
Query: 246 I--------------------VFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEIL 284
I +G+TT S L +PL SR +L L+ +++ +
Sbjct: 131 IDIMIGKGPSAKSIRIDIQPFTLVGSTTR--SGLLSSPLRSRFGIILELDFYTVKELKEI 188
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+KRA ++ VE+ A E + G R+A+
Sbjct: 189 IKRAASLMD-----------VEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 45/223 (20%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP--SIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP +++ +GQ+ L + A + + P ++ +GPPG GKTTLA I + + V+
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 186 YKFVCLSAVTSGVKDVRDAVED----ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ VTSG A+E A L + +LF+DE+HR ++ ++ P +
Sbjct: 66 LR------VTSG-----PAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 114
Query: 242 EDGSI-VFIGA-------TTENPSFHLI----------TPLLSRCRVLTLNPLKPHDVEI 283
ED + + IG E P F LI PLLSR + VE
Sbjct: 115 EDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI----------VEH 164
Query: 284 LLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326
L +++ G+ + V + +A + G RVA
Sbjct: 165 LEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVA 207
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 44/224 (19%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP ++++ +GQ+++ SL A + L ++ GPPG GKTTLA I + + +
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
VTSG V+ D + + VLF+DE+HR NK+ ++ IED
Sbjct: 79 IH------VTSGPVLVKQG--DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130
Query: 246 I--------------------VFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEIL 284
I +GAT S L +PL SR +L L+ +++ +
Sbjct: 131 IDIMIGKGPSAKSIRIDIQPFTLVGATVR--SGLLSSPLRSRFGIILELDFYTVKELKEI 188
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+KRA ++ VE+ A E + G R+A+
Sbjct: 189 IKRAASLMD-----------VEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSA--VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP ++++ +GQ+++ SL A + L ++ GPPG GKTTLA I + + +
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
VTSG V+ D + + VLF+DE+HR NK+ ++ IED
Sbjct: 79 IH------VTSGPVLVKQG--DMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130
Query: 246 I-VFIGATTENPSFHL-ITPL-----LSRCRVLTLNPLKPHDVEILLK---RAVDDVNNG 295
I + IG S + I P +R +L+ +PL+ I+L+ V ++
Sbjct: 131 IDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS-SPLRSA-FGIILELDFYTVKELKEI 188
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
+ ++ VE+ A E + G R+A+
Sbjct: 189 IKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----L 174
+ P E+ RP N+++V QDH ++ +L+ + S LP ++F+GPPGTGKT+ L
Sbjct: 22 LAQQPWVEKYRPKNLDEVTAQDHAVT---VLKKTLKSANLPHMLFYGPPGTGKTSTILAL 78
Query: 175 AKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKR-----------TVLF 222
K + + + + L+A G+ VR+ V++ +L V + ++
Sbjct: 79 TKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIII 138
Query: 223 VDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRC 268
+DE Q + +E S V N +I PL S+C
Sbjct: 139 LDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 20/215 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP ++D+VG + L+ +P +I G PG GKTT + + +
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDR---LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVED--ARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
SY L S G+ VR+ ++ +KL + K ++ +DE Q +
Sbjct: 67 LGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA 126
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
+E S A N S +I PL S+C +L + L DV LKR L
Sbjct: 127 LRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDV---LKR--------L 175
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ + V+ +D +E + +GD R A+N L+
Sbjct: 176 LQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 124 LSERMRPVNINDVVGQDHLLSP---NSLLRSAVCSNRLPSIIFWGP-PGTGKTTLAKAIV 179
L ++ RP I D + P +S ++P II P PGTGKTT+AKA+
Sbjct: 16 LEQKYRPSTI------DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC 69
Query: 180 NSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR--FNKSQQD-- 235
+ V FV + + VR + + ++ V+ +DE R +SQ+
Sbjct: 70 HDVNADMMFV--NGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLR 127
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289
SF+ + I T N +I PL SRCRV+T D ++K+ +
Sbjct: 128 SFMEAYSSNCSIII---TANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMI 178
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 43/237 (18%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAK 176
H+ + L+ + RP DVVGQ+H+L+ L + + R+ + +F G G GKT++A+
Sbjct: 22 HMSYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIAR 78
Query: 177 AIVNSVAVSY-------------------KFVCL----SAVTSGVKDVRDAVEDARKLRV 213
+ + +FV L +A + V+D RD +++ +
Sbjct: 79 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 138
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVL 271
+ + V +DEVH ++ ++ L +E+ + F+ ATT+ L +LSRC
Sbjct: 139 RGRFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK--LPVTILSRCLQF 195
Query: 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
L L V+ + + L + + A++ L +G R AL+
Sbjct: 196 HLKALD-----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 241
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 43/237 (18%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAK 176
H+ + L+ + RP DVVGQ+H+L+ L + + R+ + +F G G GKT++A+
Sbjct: 3 HMSYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIAR 59
Query: 177 AIVNSVAVSY-------------------KFVCL----SAVTSGVKDVRDAVEDARKLRV 213
+ + +FV L +A + V+D RD +++ +
Sbjct: 60 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 119
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVL 271
+ + V +DEVH ++ ++ L +E+ + F+ ATT+ L +LSRC
Sbjct: 120 RGRFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK--LPVTILSRCLQF 176
Query: 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
L L V+ + + L + + A++ L +G R AL+
Sbjct: 177 HLKALD-----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 222
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 128 MRPVNINDVVGQDHLL-SPNSLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP N + +GQ+ + + N + +A N L I+F GP G GKTTLA I + +
Sbjct: 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSAN 82
Query: 186 YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG 244
K + SG D + ++ +LF+DE+HR + + ++ P ED
Sbjct: 83 IKTTAAPXIEKSG---------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAXEDY 133
Query: 245 SI-VFIGA-------TTENPSFHLITPLLSRCRVLTLNPLK 277
+ + IG+ + P F LI +R L+ NPL+
Sbjct: 134 RLDIIIGSGPAAQTIKIDLPKFTLIGA-TTRAGXLS-NPLR 172
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 43/237 (18%)
Query: 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAK 176
H+ + L+ + RP DVVGQ+H+L+ L + + R+ + +F G G GKT++A+
Sbjct: 22 HMSYQVLARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIAR 78
Query: 177 AIVNSVAVSY-------------------KFVCL----SAVTSGVKDVRDAVEDARKLRV 213
+ + +FV L +A + V+D RD +++ +
Sbjct: 79 LLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 138
Query: 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVL 271
+ + V +DEVH ++ ++ L +E+ + F+ AT + L +LSRC
Sbjct: 139 RGRFK-VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQK--LPVTILSRCLQF 195
Query: 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
L L V+ + + L + + A++ L +G R AL+
Sbjct: 196 HLKALD-----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 241
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 43/231 (18%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP DVVGQ+H+L+ L + + R+ + +F G G GKT++A+ + +
Sbjct: 6 LARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 183 AVSY-------------------KFVCL----SAVTSGVKDVRDAVEDARKLRVKSNKRT 219
+FV L +A + V+D RD +++ + + +
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK- 121
Query: 220 VLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
V +DEVH ++ ++ L +E+ + F+ ATT+ L +LSRC L L
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK--LPVTILSRCLQFHLKALD 179
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
V+ + + L + + A++ L +G R AL+
Sbjct: 180 -----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 43/231 (18%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP DVVGQ+H+L+ L + + R+ + +F G G GKT++A+ + +
Sbjct: 13 LARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69
Query: 183 AVSY-------------------KFVCL----SAVTSGVKDVRDAVEDARKLRVKSNKRT 219
+FV L +A + V+D RD +++ + + +
Sbjct: 70 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK- 128
Query: 220 VLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
V +DEVH ++ ++ L +E+ + F+ ATT+ L +LSRC L L
Sbjct: 129 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK--LPVTILSRCLQFHLKALD 186
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
V+ + + L + + A++ L +G R AL+
Sbjct: 187 -----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 226
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 43/231 (18%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSV 182
L+ + RP DVVGQ+H+L+ L + + R+ + +F G G GKT++A+ + +
Sbjct: 6 LARKWRPQTFADVVGQEHVLTA---LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 183 AVSY-------------------KFVCL----SAVTSGVKDVRDAVEDARKLRVKSNKRT 219
+FV L +A + V+D RD +++ + + +
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFK- 121
Query: 220 VLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277
V +DEVH ++ ++ L +E+ + F+ ATT+ L +LSRC L L
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK--LPVTILSRCLQFHLKALD 179
Query: 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328
V+ + + L + + A++ L +G R AL+
Sbjct: 180 -----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 219
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-----VTSGVKDVRDAVEDARKLRVKS 215
++ +GPPGTGKT L KA+ NS ++ V S + G + VRD AR+
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE----- 263
Query: 216 NKRTVLFVDEV 226
N +++F+DEV
Sbjct: 264 NAPSIIFIDEV 274
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 150 RSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-----VTSGVKDVRD 203
R A ++P ++ GPPGTGKT LAKA+ V + + S+ V G VRD
Sbjct: 35 RYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRD 94
Query: 204 AVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
E A+K +++F+DE+ KS+
Sbjct: 95 LFETAKK-----QAPSIIFIDEIDAIGKSR 119
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVC----------SNRLPS--IIFWGP 166
VP LSE+ V DV G L L+ AV NR P+ I+ +GP
Sbjct: 13 VPRGSLSEKPN-VKWEDVAG---LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGP 68
Query: 167 PGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEV 226
PGTGK+ LAKA+ ++ V S + S + + + NK +++F+DEV
Sbjct: 69 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEV 128
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSY-KFVCLSAVTSGVKDVRDAVEDARKLRVKSNKR 218
I+ +GPPGTGKT LAKA+ ++ + V V + + V+D KL K
Sbjct: 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKL-AKEKAP 111
Query: 219 TVLFVDEVHRFNKSQQDSF 237
+++F+DE+ + D+
Sbjct: 112 SIIFIDEIDAIAAKRTDAL 130
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR-----VK 214
++ +GPPGTGKT LAKA+ ++ ++ F + SG+ D + E AR +R K
Sbjct: 217 GVLLYGPPGTGKTLLAKAVAATIGANFIF----SPASGIVD-KYIGESARIIREMFAYAK 271
Query: 215 SNKRTVLFVDEV 226
++ ++F+DEV
Sbjct: 272 EHEPCIIFMDEV 283
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDARKLRVK 214
I+ +GPPGTGKT +A+A+ N + + + S + ++R A E+A K
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK---- 295
Query: 215 SNKRTVLFVDEV 226
N ++F+DE+
Sbjct: 296 -NAPAIIFIDEL 306
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 145 PNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
P+ L+ + ++ ++F+GPPG GKT LAKAI N ++
Sbjct: 500 PDKFLKFGMTPSK--GVLFYGPPGCGKTLLAKAIANECQANF 539
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDARKLRVK 214
I+ +GPPGTGKT +A+A+ N + + + S + ++R A E+A K
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK---- 295
Query: 215 SNKRTVLFVDEV 226
N ++F+DE+
Sbjct: 296 -NAPAIIFIDEL 306
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 145 PNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
P+ L+ + ++ ++F+GPPG GKT LAKAI N ++
Sbjct: 500 PDKFLKFGMTPSK--GVLFYGPPGCGKTLLAKAIANECQANF 539
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDARKLRVK 214
I+ +GPPGTGKT +A+A+ N + + + S + ++R A E+A K
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK---- 295
Query: 215 SNKRTVLFVDEV 226
N ++F+DE+
Sbjct: 296 -NAPAIIFIDEL 306
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDARKLRVK 214
I+ +GPPGTGKT +A+A+ N + + + S + ++R A E+A K
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK---- 295
Query: 215 SNKRTVLFVDEV 226
N ++F+DE+
Sbjct: 296 -NAPAIIFIDEL 306
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 142 LLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-----VTS 196
LLSP + + I+ +GPPGTGKT A+A+ N ++ V S V
Sbjct: 229 LLSPERFATLGIDPPK--GILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286
Query: 197 GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
G + VR+ E AR + K ++F DE+ ++ D
Sbjct: 287 GARMVRELFEMAR-----TKKACIIFFDEIDAVGGARFD 320
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDARKLRVK 214
I+ +GPPGTGKT +A+A+ N + + + S + ++R A E+A K
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK---- 295
Query: 215 SNKRTVLFVDEV 226
N ++F+DE+
Sbjct: 296 -NAPAIIFIDEL 306
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDARKLRVK 214
I+ +GPPGTGKT +A+A+ N + + + S + ++R A E+A K
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK---- 295
Query: 215 SNKRTVLFVDEV 226
N ++F+DE+
Sbjct: 296 -NAPAIIFIDEL 306
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 140 DHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA----- 193
++L P+ + ++P ++ GPPGTGKT LAKAI V + + S
Sbjct: 29 EYLREPSRFQK---LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85
Query: 194 VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
V G VRD E A+K ++F+DE+ + +
Sbjct: 86 VGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQR 120
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 24/140 (17%)
Query: 103 KRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSL--------LRSAVC 154
K LK +VDS A ++ + + V +D+ GQD L+ +L LR +
Sbjct: 85 KDLKNFRNVDSNLA-NLIMNEIVDNGTAVKFDDIAGQD--LAKQALQEIVILPSLRPELF 141
Query: 155 SN-RLPS--IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-----GVKDVRDAVE 206
+ R P+ ++ +GPPG GKT LAKA+ ++ + +++TS G K VR
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 207 DARKLRVKSNKRTVLFVDEV 226
AR+L+ +++F+D+V
Sbjct: 202 VARELQP-----SIIFIDQV 216
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 156 NRLPS--IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
NR P+ I+ +GPPGTGK+ LAKA+ ++ V S + S + +
Sbjct: 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 106
Query: 214 KSNKRTVLFVDEV 226
+ NK +++F+D+V
Sbjct: 107 RENKPSIIFIDQV 119
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 156 NRLPS--IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
NR P+ I+ +GPPGTGK+ LAKA+ ++ V S + S + +
Sbjct: 65 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 124
Query: 214 KSNKRTVLFVDEV 226
+ NK +++F+D+V
Sbjct: 125 RENKPSIIFIDQV 137
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 156 NRLPS--IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRV 213
NR P+ I+ +GPPGTGK+ LAKA+ ++ V S + S + +
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 139
Query: 214 KSNKRTVLFVDEV 226
+ NK +++F+D+V
Sbjct: 140 RENKPSIIFIDQV 152
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA--VTSGVKDVRDAVEDARKLRVKSNKR 218
I+ +GPPGTGK+ LAKA+ S F S+ V+ + + V++ +L + NK
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL-ARENKP 228
Query: 219 TVLFVDEV 226
+++F+DE+
Sbjct: 229 SIIFIDEI 236
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 23/122 (18%)
Query: 130 PVNINDVVG--------QDHLLSPNSLLRSAVCSN-RLP--SIIFWGPPGTGKTTLAKAI 178
PVN D+ G ++ ++ P +LR + + R P I+ +GPPGTGKT + K I
Sbjct: 80 PVNWEDIAGVEFAKATIKEIVVWP--MLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137
Query: 179 VNSVAVSYKFVCLSAVTS-----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
+ ++ + S++TS G K VR AR + V+F+DE+ +
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR-----CQQPAVIFIDEIDSLLSQR 192
Query: 234 QD 235
D
Sbjct: 193 GD 194
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKL--RVKSNKR 218
+I +G PGTGKT LAKA+ N + ++ + S + K + D R++ N
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ--KYLGDGPRLCRQIFKVAGENAP 276
Query: 219 TVLFVDEVHRFNKSQQDS 236
+++F+DE+ + DS
Sbjct: 277 SIVFIDEIDAIGTKRYDS 294
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA--VTSGVKDVRDAVEDARKLRVKSNKR 218
I+ +GPPGTGK+ LAKA+ S F S+ V+ + + V++ +L + NK
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL-ARENKP 106
Query: 219 TVLFVDEVHRFNKSQQDS 236
+++F+DE+ S+ ++
Sbjct: 107 SIIFIDEIDSLCGSRSEN 124
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 27/118 (22%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-----GVKDVRDAVEDARKLRVKS 215
++ +GPPG GKT LA+A+ + ++ + +++TS G K VR AR +
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM---- 112
Query: 216 NKRTVLFVDEV-----------HRFNKSQQDSF------LPVIEDGSIVFIGATTENP 256
+ +++F+DEV H ++ + F LP DG + + A T P
Sbjct: 113 -QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 162 IFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-------VTSGVKDVRDAVEDARKLRVK 214
+ +GPPGTGKT LA+A + + F+ L+A + G K VRDA A K
Sbjct: 219 LMYGPPGTGKTLLARAC--AAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA-----K 271
Query: 215 SNKRTVLFVDEVHRFNKSQQDS 236
T++F+DE+ + DS
Sbjct: 272 EKAPTIIFIDELDAIGTKRFDS 293
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKR-- 218
+I +GPPGTGKT LA+A+ + KF+ +S K + + R+L V + +
Sbjct: 185 VILYGPPGTGKTLLARAVAHH--TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242
Query: 219 TVLFVDEV 226
+++F+DE+
Sbjct: 243 SIIFMDEI 250
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 145 PNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKD- 200
P+ L+ + ++ ++F+GPPG GKT LAKAI N +S K L + G +
Sbjct: 38 PDKFLKFGMTPSK--GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 95
Query: 201 -VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
VR+ + AR+ VLF DE+ K++
Sbjct: 96 NVREIFDKARQ-----AAPCVLFFDELDSIAKAR 124
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 157 RLP-SIIFWGPPGTGKTTLAKAIVNSVAVSY------KFVCLSAVTSGVKDVRDAVEDAR 209
R+P I+ GPPGTGKT LA+A+ V + FV L V G VRD A
Sbjct: 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF-VGVGAARVRDLFAQA- 104
Query: 210 KLRVKSNKRTVLFVDEV 226
K++ ++F+DE+
Sbjct: 105 ----KAHAPCIVFIDEI 117
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 157 RLP-SIIFWGPPGTGKTTLAKAIVNSVAVSY------KFVCLSAVTSGVKDVRDAVEDAR 209
R+P ++ GPPG GKT LA+A+ V + FV + V G VRD E A
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF-VGVGAARVRDLFETA- 128
Query: 210 KLRVKSNKRTVLFVDEV 226
K + ++F+DE+
Sbjct: 129 ----KRHAPCIVFIDEI 141
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 157 RLP-SIIFWGPPGTGKTTLAKAIVNSVAVSY------KFVCLSAVTSGVKDVRDAVEDAR 209
R+P ++ GPPG GKT LA+A+ V + FV + V G VRD E A
Sbjct: 62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF-VGVGAARVRDLFETA- 119
Query: 210 KLRVKSNKRTVLFVDEV 226
K + ++F+DE+
Sbjct: 120 ----KRHAPCIVFIDEI 132
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 157 RLP-SIIFWGPPGTGKTTLAKAIVNSVAVSY------KFVCLSAVTSGVKDVRDAVEDAR 209
R+P ++ GPPG GKT LA+A+ V + FV + V G VRD E A
Sbjct: 47 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF-VGVGAARVRDLFETA- 104
Query: 210 KLRVKSNKRTVLFVDEVHRFNKSQ 233
K + ++F+DE+ + +
Sbjct: 105 ----KRHAPCIVFIDEIDAVGRKR 124
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 157 RLP-SIIFWGPPGTGKTTLAKAIVNSVAVSY------KFVCLSAVTSGVKDVRDAVEDAR 209
R+P ++ GPPG GKT LA+A+ V + FV + V G VRD E A
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF-VGVGAARVRDLFETA- 128
Query: 210 KLRVKSNKRTVLFVDEVHRFNKSQ 233
K + ++F+DE+ + +
Sbjct: 129 ----KRHAPCIVFIDEIDAVGRKR 148
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 157 RLP-SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-----VTSGVKDVRDAVEDARK 210
R+P I+ GPPGTG T LA+A+ V + + S V G VRD A
Sbjct: 47 RMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA-- 104
Query: 211 LRVKSNKRTVLFVDEV 226
K++ ++F+DE+
Sbjct: 105 ---KAHAPCIVFIDEI 117
>pdb|2CPW|A Chain A, Solution Structure Of Rsgi Ruh-031, A Uba Domain From
Human Cdna
Length = 64
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 3 MEQLLSMGFPDXXXXXXXXXTGGKSTLKATEWILSHKSSTT 43
++ LLSMGFP TGG+S A +W+ SH ++
Sbjct: 23 LDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 136 VVGQDHLLSPNSLLRSAVCSNRLP--SIIFWGPPGTGKTTLAKAIVNSVAVSYKF---VC 190
+VGQ++ ++ + S ++ +++ GPPGTGKT LA AI + F V
Sbjct: 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98
Query: 191 LSAVTSGVKDVRDAVEDARK---LRVKSNK 217
++ +K +E+ R+ LR+K K
Sbjct: 99 SEVYSTEIKKTEVLMENFRRAIGLRIKETK 128
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKD 200
P + GPPG GKT+LAK+I S+ KFV +S GV+D
Sbjct: 109 PILCLAGPPGVGKTSLAKSIAKSLG--RKFVRIS--LGGVRD 146
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 140 DHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-- 196
D+L SP L+ ++P + GPPG GKT LAKA+ V + + +
Sbjct: 23 DYLKSPERFLQ---LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79
Query: 197 ---GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
G VR ++AR + ++++DE+ K + +
Sbjct: 80 GGLGAARVRSLFKEAR-----ARAPCIVYIDEIDAVGKKRSTTM 118
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG-VKDVRDAVEDARKLRVKSNKRT 219
++ GPPG GKT LAKA+ N +++ V + + V + AV + R K++
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQ-RAKNSAPC 105
Query: 220 VLFVDEVHRFNKSQQD--------------SFLPVIEDGSIVFIGATTENPSFHLITPLL 265
V+F DEV + D + + +E VFI A T P +I P +
Sbjct: 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRP--DIIDPAI 163
Query: 266 SR 267
R
Sbjct: 164 LR 165
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 158 LPSIIFWGPPGTGKTTLAKAIVNSV 182
+ S IF GP G GKT LA+A+ S+
Sbjct: 521 IGSFIFLGPTGVGKTELARALAESI 545
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
LP+I+ G PG GKTTL K + + + Y
Sbjct: 4 LPNILLTGTPGVGKTTLGKELASKSGLKY 32
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSY 186
LP+I+ G PG GKTTL K + + + Y
Sbjct: 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 133 INDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
I+ V+GQ+H + ++++A R ++ G PGTGK+ L +A+
Sbjct: 40 IDQVIGQEHAVE---VIKTAANQKR--HVLLIGEPGTGKSMLGQAM 80
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKF 188
L++S + R +++ GPPGTGKT LA AI + F
Sbjct: 69 LIKSKKXAGR--AVLLAGPPGTGKTALALAIAQELGSKVPF 107
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194
S LR AV R+ I+ G G+GKTTL KA++ + + + + V
Sbjct: 166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 160 SIIFWGPPGTGKT----TLAKAIVNSVAVSYKFVCLSA--VTSGVKDVRDAVEDARKLRV 213
+I+ GP G+GKT TLAK + +A+S A V V+++ + A V
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 214 KSNKRTVLFVDEVHRFNK 231
+ ++ ++F+DE+ + ++
Sbjct: 134 QKAQKGIVFIDEIDKISR 151
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 149 LRSAVCSNRLP----SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG---VKDV 201
LR+ SN + +I+ GP G+GKT LA+ + + V + + +T +DV
Sbjct: 38 LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 97
Query: 202 RDAVEDARK---LRVKSNKRTVLFVDEVHRFNK 231
+ ++ + V+ +R ++++D++ + ++
Sbjct: 98 ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR 130
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 149 LRSAVCSNRLP----SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG---VKDV 201
LR+ SN + +I+ GP G+GKT LA+ + + V + + +T +DV
Sbjct: 38 LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 97
Query: 202 RDAVEDARK---LRVKSNKRTVLFVDEVHRFNK 231
+ ++ + V+ +R ++++D++ + ++
Sbjct: 98 ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR 130
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 39/195 (20%)
Query: 145 PNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDA 204
P+ +L +C ++ I+ GP G+GK+T ++++ + + + ++ + D
Sbjct: 125 PDKVLE--LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT--------IEDP 174
Query: 205 VEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI-EDGSIVFIG-----ATTENP-- 256
+E V +K++++ EV KS D+ + ED ++F+G T E
Sbjct: 175 IE-----YVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALR 229
Query: 257 ----------SFHLITPLLSRCRVLTLNPLKPHD-VEILLKRAVDD-VNNGLSKSVGGTR 304
+ H T + + R++ + PL + V I+L + ++ L +GG R
Sbjct: 230 AAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGR 289
Query: 305 VEVNHDAIEFLCSNC 319
V A E L N
Sbjct: 290 VL----AYELLIPNT 300
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 35/188 (18%)
Query: 162 IFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS------GVKDVRDAV---------E 206
+ +GPPG GKTT A + + S V S GVK+ D + E
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 140
Query: 207 DARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLS 266
+A+ L + K V+ +DEV + + + + F T+ TPL+
Sbjct: 141 EAQNL---NGKHFVIIMDEVDGMSGGDRGGVGQLAQ-----FCRKTS--------TPLIL 184
Query: 267 RCRVLTLNPLKPHD---VEILLKRA-VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD 322
C L ++P D ++I +R + + + L + +++ + I+ L GD
Sbjct: 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD 244
Query: 323 ARVALNAL 330
R +N L
Sbjct: 245 IRQVINLL 252
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 162 IFWGPPGTGK-TTLAKAIVNSVAVSYKFVC 190
I GPPGTGK TT+ + I+ +V K +C
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVLC 238
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 162 IFWGPPGTGK-TTLAKAIVNSVAVSYKFVC 190
I GPPGTGK TT+ + I+ +V K +C
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVLC 238
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKF 188
R+P ++ GP G GK TL K +++ ++F
Sbjct: 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRF 42
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 162 IFWGPPGTGKTTLAKAIVNSVA-------------VSYKFVCLSAVTSGVKDVRDAVEDA 208
+ G PG GKT + + + + VS + L A + + ++
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 209 RKLRVKSNKRTVLFVDEVHRFNKSQQ--------DSFLPVIEDGSIVFIGATT 253
+ V+S +LF+DE+H + + + P + G + IGATT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 307
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSV 182
++ RP ++N + + L + L+S R LP ++ +GP GTGK T A++ S+
Sbjct: 6 DKYRPKSLNALSHNEEL---TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 162 IFWGPPGTGKTTLAKAIVNSVA-------------VSYKFVCLSAVTSGVKDVRDAVEDA 208
+ G PG GKT + + + + VS + L A + + ++
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 209 RKLRVKSNKRTVLFVDEVHRFNKSQQ--------DSFLPVIEDGSIVFIGATT 253
+ V+S +LF+DE+H + + + P + G + IGATT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 170
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 24/142 (16%)
Query: 136 VVGQDHLLSPNSLLRSAV---CSNRLPSIIFWGPPGTGKTTLAKA----IVNSVAVSYKF 188
V G D L+ L A+ C R + + G G GKT +A+ IV
Sbjct: 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241
Query: 189 VC------LSAVTSGVKDVRDAVEDARKL--RVKSNKRTVLFVDEVHRF------NKSQQ 234
C + ++ +G K D + + L +++ + ++LF+DE+H + Q
Sbjct: 242 DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV 301
Query: 235 DS---FLPVIEDGSIVFIGATT 253
D+ P++ G I IG+TT
Sbjct: 302 DAANLIKPLLSSGKIRVIGSTT 323
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 42/214 (19%)
Query: 134 NDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193
N VVG + + ++ L A R + +G G GKT L ++I N V + + +
Sbjct: 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165
Query: 194 VTSG--VKDVRDAVEDAR--KLRVKSNKRT-VLFVDEVHRFNKSQQDSFLPVIEDGSIVF 248
+TS + D+ D++++ + + R K K+ +L +D+V FL
Sbjct: 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQ---------FL---------- 206
Query: 249 IGAT-TENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDVNNGL---------- 296
IG T + FH L S +++ + +P + R V GL
Sbjct: 207 IGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266
Query: 297 -SKSVGGTRVEVNH-----DAIEFLCSNCDGDAR 324
KS+ +E+ H + + F+ N D + R
Sbjct: 267 TRKSIARKMLEIEHGELPEEVLNFVAENVDDNLR 300
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 200 DVRDAVEDARK------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT- 252
D R V+D +K +++K + L D+V FN + D ++E+ IV G+
Sbjct: 75 DTRGIVKDEKKHTGIVFVQLKGASPSFLLYDDVAYFNXTLNDINWDIVEEAKIVNFGSVI 134
Query: 253 -TENPSFHLITPLLSRCR 269
NPS + ++ + +
Sbjct: 135 LARNPSRETVXKVIKKIK 152
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 28/153 (18%)
Query: 124 LSERMRPVNINDVVGQDHLLSPN-SLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
L+ER ++ V+G+D + +L+ +N P +I G PG GKT LA+ I
Sbjct: 12 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNN--PVLI--GEPGVGKTAIVEGLAQRI 67
Query: 179 VNS---VAVSYKFVC---LSAVTSGVKDVRDAVEDARKLRV----KSNKRTVLFVDEVHR 228
+N + + V + A+ +G K R E+ K + K +LF+DE+H
Sbjct: 68 INGEVPEGLKGRRVLALDMGALVAGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHT 126
Query: 229 F-NKSQQDSFL-------PVIEDGSIVFIGATT 253
+ D + P + G + +GATT
Sbjct: 127 MVGAGKADGAMDAGNMLKPALARGELHCVGATT 159
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 200 DVRDAVEDARK------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT- 252
D R V+D +K +++K + L D+V FN + D ++E+ IV G+
Sbjct: 75 DTRGIVKDEKKHTGIVFVQLKGASPSFLLYDDVAYFNXTLNDINWDIVEEAKIVNFGSVI 134
Query: 253 -TENPSFHLITPLLSRCR 269
NPS + ++ + +
Sbjct: 135 LARNPSRETVXKVIKKIK 152
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 40/125 (32%)
Query: 162 IFWGPPGTGKTTLAKAIVNSVAVSY------------KFVC--LSAVTSGVK---DVRDA 204
I G PG GKT AIV +A+ K V LS++ +G K D +
Sbjct: 47 ILLGDPGVGKT----AIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEER 102
Query: 205 VEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENP--SFHLIT 262
++ K + + V+F+DE+H ++V GA E + +++
Sbjct: 103 LKSILKEVQDAEGQVVMFIDEIH-----------------TVVGAGAVAEGALDAGNILK 145
Query: 263 PLLSR 267
P+L+R
Sbjct: 146 PMLAR 150
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 161 IIFWGPPGTGKTTLAKAIVNS---VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNK 217
++F GPPG GK T AK + V +S + AV G + A E + + +
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 218 RTVLFVDEV 226
+ ++EV
Sbjct: 63 LIIALIEEV 71
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
I F GP G+GKTT+ + + + Y V ++ GV E+ RK+ ++ N +
Sbjct: 25 ITFEGPEGSGKTTVINEVYHRLVKDYD-VIMTREPGGVP----TGEEIRKIVLEGNDMDI 79
Query: 221 LFVDEVHRFNKSQQDSF----LPVIEDGSIVF 248
E F S+++ +P +++G +V
Sbjct: 80 R--TEAMLFAASRREHLVLKVIPALKEGKVVL 109
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 145 PNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDA 204
P+ +L +C + I+ GP G+GK+T + ++ + + + ++ + D
Sbjct: 114 PDKVLE--LCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIIT--------IEDP 163
Query: 205 VEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI-EDGSIVFIG-----ATTENP-- 256
+E V +K++++ EV KS D+ + ED ++F+G T E
Sbjct: 164 IE-----YVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEXRDLETVETALR 218
Query: 257 ----------SFHLITPLLSRCRVLTLNPLKPHD-VEILLKRAVDD-VNNGLSKSVGGTR 304
+ H T + + R++ + PL + V I+L + ++ L +GG R
Sbjct: 219 AAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGR 278
Query: 305 VEVNHDAIEFLCSNC 319
V A E L N
Sbjct: 279 VL----AYELLIPNT 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,013,034
Number of Sequences: 62578
Number of extensions: 578648
Number of successful extensions: 1864
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 115
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)