BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008664
(558 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CG07|WRIP1_RAT ATPase WRNIP1 OS=Rattus norvegicus GN=Wrnip1 PE=2 SV=1
Length = 660
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 284/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + T LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 MFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>sp|Q91XU0|WRIP1_MOUSE ATPase WRNIP1 OS=Mus musculus GN=Wrnip1 PE=1 SV=2
Length = 660
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 283/442 (64%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN-S 181
PL+++MRP + D +GQ + +LLRS + +N +PS+I WGPPG GKTTLA I N S
Sbjct: 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNS 280
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 281 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 340
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN-------- 293
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ +
Sbjct: 341 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 400
Query: 294 --NGLSKSVGGTR---VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
+ LS S + V + A++ L DGDAR LN L+++ + ++
Sbjct: 401 PTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL------SSRK 454
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
V + SP L+T +D KE Q H+ YDRAGEEHYN ISALHK+MRG+D +A++
Sbjct: 455 VFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASL 514
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 515 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQ 574
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 575 CVVYFARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 634
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 635 MYSEP-VDQDYLPEELRGVDFF 655
>sp|Q96S55|WRIP1_HUMAN ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1 PE=1 SV=2
Length = 665
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/442 (48%), Positives = 280/442 (63%), Gaps = 23/442 (5%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-NS 181
PL++ MRP + D GQ + ++LLRS + +N +PS+I WGPPG GKTTLA I NS
Sbjct: 226 PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNS 285
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
S +FV LSA + DVRD ++ A+ + ++T+LF+DE+HRFNKSQQD+FLP +
Sbjct: 286 KKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHV 345
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G+I IGATTENPSF + LLSRCRV+ L L + +L RA++ + + S
Sbjct: 346 ECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSR 405
Query: 302 GT-------------RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKE 348
T + + A++ L DGDAR LN L+++ + ++
Sbjct: 406 PTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL------SSRK 459
Query: 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408
+ + SP L+T +D KE Q H+ YDRAGEEHYN ISALHKSMRG+D +A++
Sbjct: 460 MFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASL 519
Query: 409 YWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQ 468
YWLARMLEGGE PLY+ARRLVRFASED+GLADP AL QAV+ YQ CHF+GMPEC V+LAQ
Sbjct: 520 YWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQ 579
Query: 469 CVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTP 528
CV Y A APKSI +Y A + +R G VPLHLRNAPT+LMK++GYGKGY Y P
Sbjct: 580 CVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNP 639
Query: 529 --DDPSAKQSFLPPSLEGYKFL 548
+P Q +LP L G F
Sbjct: 640 MYSEP-VDQEYLPEELRGVDFF 660
>sp|Q75JU2|WRIP1_DICDI ATPase WRNIP1 OS=Dictyostelium discoideum GN=wrnip1 PE=3 SV=1
Length = 876
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 193/436 (44%), Positives = 268/436 (61%), Gaps = 24/436 (5%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
APLSE+MRP ++D +GQ+ LL + +++ S LPS I +GPPG GKTTLA+ + +
Sbjct: 195 APLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASK 254
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+Y LSAV SGVKD+++ ++ AR ++ K+T+LF+DE+HR+NK QQD LP I
Sbjct: 255 S--NYNINALSAVGSGVKDIKEVIDKARN-TLQFGKKTILFIDEIHRYNKLQQDVLLPAI 311
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E G I+ IGATTENPSF L LLSRC+V + L ++E L+KR ++ ++ +
Sbjct: 312 ESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLE-----VTPLLM 366
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R+ ++ DAI+ L DGDARVA+N L++ A++ +E E+ +E S
Sbjct: 367 DRRLIMDEDAIKSLAEIADGDARVAINVLDM-----AIKANKEEQTYKERMEEKHSTSGI 421
Query: 362 VALVTLDDAKEA--FQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419
V + L + Q L YD+ G+ Y LISALHKS+RG+DA+A YW+ RMLE G
Sbjct: 422 VRDIVLTKKQMGSLLQRTSLIYDKGGDAFYELISALHKSVRGSDANATAYWVIRMLESGC 481
Query: 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKS 479
+PLYI RR+VR ASED+GLAD AL A++ YQA HF+GMPEC + QC YLA A KS
Sbjct: 482 EPLYIVRRMVRMASEDIGLADNSALPLAIAAYQAVHFVGMPECTNAILQCAVYLANAAKS 541
Query: 480 ISIYRALGAAQKVIRESVGQNEG--VPLHLRNAPTKLMKEIGYGKGYIYT---PDDPSAK 534
S RE + ++EG VP+HLRNAPTK+MK+ GYG Y Y D
Sbjct: 542 NSCDHWYAHT----REYLEKHEGPPVPIHLRNAPTKMMKDWGYGADYQYNHAFDDQSQVT 597
Query: 535 QSFLPPSLEGYKFLDW 550
Q +LP ++ KF ++
Sbjct: 598 QIYLPEPIKNEKFFEY 613
>sp|O13984|WRIP1_SCHPO ATPase WRNIP1 homolog C26H5.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26H5.02c PE=3 SV=2
Length = 504
Score = 354 bits (909), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 205/495 (41%), Positives = 287/495 (57%), Gaps = 52/495 (10%)
Query: 64 PVQP--KLDRF-FHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVP 120
PV P K +R+ H +T SS Q K E EPSP K TR D
Sbjct: 38 PVSPFFKKERYKHHLETNVSSH-----QSATKFIEPEPSPTKKTKLTRRDT--------- 83
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
PL+ER RP ++++ VGQ+ L+ ++R+ + +R S+I WG GTGKTTLA+ I
Sbjct: 84 -RPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTTLARLI-- 140
Query: 181 SVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
+V +F+ +SA ++ V D R ED++ + ++T++F+DEVHRFN++QQD FLP+
Sbjct: 141 AVTTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPM 200
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E G + IGATTENPSF L + L+SRC V L L +V+ +L A S+ +
Sbjct: 201 VEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHAC----LLESERL 256
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSP 360
G + V I+++ + DGDAR+ALNALE+S I + P+
Sbjct: 257 GSSMPNVETSIIDYISAITDGDARMALNALEMS-IGMLRQGPL----------------- 298
Query: 361 YVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420
+L+D K+ YDR G+ HY+ ISA HKS+RG+D DA +Y+L RMLE GE
Sbjct: 299 -----SLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYYLGRMLESGED 353
Query: 421 PLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480
PLY+ARR+VR ASED+G+AD L A S + A +GMPE +VILA C LALAPKS+
Sbjct: 354 PLYVARRMVRIASEDIGIADNSMLPLASSTFTAVQQVGMPEADVILAHCAVALALAPKSV 413
Query: 481 SIYRALGAAQKVIRE--SVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DPSAKQS 536
+YR+ A + + G+ E +P+H+RNAPT LMK++GY KGY Y PD D Q
Sbjct: 414 DVYRSYNAVKSFLSSHPDAGRAE-IPMHIRNAPTNLMKQLGYHKGYKYNPDYKDGLVMQE 472
Query: 537 FLPPSLEGYKFLDWP 551
+LP S++G KF P
Sbjct: 473 YLPDSIKGTKFYKLP 487
>sp|P45262|RARA_HAEIN Replication-associated recombination protein A OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rarA PE=3 SV=1
Length = 446
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/429 (42%), Positives = 268/429 (62%), Gaps = 31/429 (7%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
PL+ +MRP ++ GQ HL+ LR A+ + + S+IFWGPPGTGKTTLA+ I
Sbjct: 14 GPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQR 73
Query: 182 VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
+ + + SAVTSG+K++R+A++ A++ R+ ++++T+LFVDEVHRFNKSQQD+FLP I
Sbjct: 74 INAEVERI--SAVTSGIKEIREAIDRAKQNRL-ADRKTILFVDEVHRFNKSQQDAFLPHI 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
EDG+++FIGATTENPSF L LLSR RV L L ++E +L++AV+D GL K
Sbjct: 131 EDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPKRGLGKE-- 188
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
R+ + + ++ L +GDAR+ALN LE+ V+ DE++
Sbjct: 189 --RLILEENLLQVLAEYVNGDARLALNCLELM---------------VDMADETENGKK- 230
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+ KE + +D+ G+ Y+LISALHKS+RG+ DAA+YW AR+L G P
Sbjct: 231 ---IDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDP 287
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
LY+ARRL+ ASEDVG ADP A+ A++ + +G E +AQ + YL++APKS +
Sbjct: 288 LYVARRLLAIASEDVGNADPRAMQVALAAWDCFSRVGAYEGERAIAQAIIYLSVAPKSNA 347
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFL 538
+Y A A++ ++ + VP HLRNAPT LMKE+GYG Y Y D+P +A +++
Sbjct: 348 VYTAFNTAKQQAKDLPDYD--VPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAAGENYF 405
Query: 539 PPSLEGYKF 547
PP L+ ++
Sbjct: 406 PPELKDTQY 414
>sp|P0AAZ4|RARA_ECOLI Replication-associated recombination protein A OS=Escherichia coli
(strain K12) GN=rarA PE=1 SV=1
Length = 447
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 256/428 (59%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A V K V + E E G
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+ +A + + P
Sbjct: 350 YTAFKAALADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEIAQTRY 415
>sp|P0AAZ5|RARA_ECOL6 Replication-associated recombination protein A OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rarA PE=3
SV=1
Length = 447
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 256/428 (59%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A V K V + E E G
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+ +A + + P
Sbjct: 350 YTAFKAALADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEIAQTRY 415
>sp|P0AAZ6|RARA_ECO57 Replication-associated recombination protein A OS=Escherichia coli
O157:H7 GN=rarA PE=3 SV=1
Length = 447
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 256/428 (59%), Gaps = 30/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP N+ +GQ HLL+ L A+ + L S+I WGPPGTGKTTLA+ I
Sbjct: 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ + SAVTSGVK++R+A+E AR+ R + +RT+LFVDEVHRFNKSQQD+FLP IE
Sbjct: 75 NADVERI--SAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIE 131
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
DG+I FIGATTENPSF L + LLSR RV L L D+E +L +A++D G GG
Sbjct: 132 DGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGY----GG 187
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+ + + + +GDAR ALN LE+ A A V K V + E E G
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE---- 243
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
+ +D G+ Y+LISALHKS+RG+ DAA+YW AR++ G PL
Sbjct: 244 --------------RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR + ASEDVG ADP A+ A++ + +G E +AQ + YLA APKS ++
Sbjct: 290 YVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAV 349
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y A AA RE + VP+HLRNAPTKLMKE+GYG+ Y Y D+ +A + + P
Sbjct: 350 YTAFKAALADARERPDYD--VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFP 407
Query: 540 PSLEGYKF 547
P + ++
Sbjct: 408 PEIAQTRY 415
>sp|P40151|WRIP1_YEAST DNA-dependent ATPase MGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MGS1 PE=1 SV=2
Length = 587
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/505 (37%), Positives = 284/505 (56%), Gaps = 61/505 (12%)
Query: 75 FQTKPSSAAANAVQEKEKDREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNIN 134
F+ PS+ A ++ E P R + +D +S + H PLSE++RP +
Sbjct: 96 FKAAPSTDFAKSIVE----------PASSRDQLHNDYESRWLQKISHLPLSEKLRPKELR 145
Query: 135 DVVGQDHLLSP-NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-------- 185
D VGQ H+LS N L + +PS+I WGPPG GKT+LA+ + + S
Sbjct: 146 DYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLARLLTKTATTSSNESNVGS 205
Query: 186 -YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG 244
Y + SA + +++R E ++K + +RTVLF+DE+HRFNK QQD LP +E+G
Sbjct: 206 RYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEIHRFNKVQQDLLLPHVENG 265
Query: 245 SIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTR 304
I+ IGATTENPSF L L+SRC + L L +++ I+L R + +N K V
Sbjct: 266 DIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLSRGIALLNK-CRKQVWNIE 324
Query: 305 --VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVR------VPVKEVKEVEQEDESD 356
++++ +E++ GD R ALN LE+ ++ R + + +V+++ + + S+
Sbjct: 325 NPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERKADEEELSIDDVRDIIKNNSSN 384
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416
G + Y YD G+ HY+ ISA HKS+RG D +A++Y+LARML+
Sbjct: 385 GLNTY-------------------YDPKGDNHYDTISAFHKSIRGGDENASLYYLARMLQ 425
Query: 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476
GGE PLY+ARR++R ASED+GL D L AV+ + A +G+PE ++ LAQC LA A
Sbjct: 426 GGEDPLYVARRMIRIASEDIGLRDSSLLPLAVAAHDAVMKVGLPEADLALAQCCVALARA 485
Query: 477 PKSISIYRALGAAQKVIRE---SVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD--DP 531
PKS+ +YRA + ++ E S+ +E +P+H+RNAPTKLM+E+GY KGY Y PD +
Sbjct: 486 PKSVELYRAWKKLRAMMSENMYSLASSE-IPMHIRNAPTKLMEELGYHKGYKYNPDYIEG 544
Query: 532 SAKQSFLP-------PSLEGYKFLD 549
+Q + P P+ KFLD
Sbjct: 545 KVQQDYFPKEVLEKCPNKTDLKFLD 569
>sp|P39918|RARA_COXBU Replication-associated recombination protein A OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=rarA PE=3 SV=3
Length = 440
Score = 318 bits (816), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 189/428 (44%), Positives = 253/428 (59%), Gaps = 33/428 (7%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP + + VGQ HLL + L A+ +L S+I WGPPG+GKTTLA+ I
Sbjct: 9 PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQKA 68
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+ +SAV +GVKD+RD VE A + + ++ T+LFVDEVH FNKSQQD+FLP +E
Sbjct: 69 GA--RVESISAVLAGVKDIRDVVERAERHKGQA---TILFVDEVHGFNKSQQDAFLPHVE 123
Query: 243 DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGG 302
G+I IGATTENPSF L LLSR RV L L D+ +L+ A+ + GL K
Sbjct: 124 KGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERGLGKKA-- 181
Query: 303 TRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362
+E+ + DGDAR LN LEI A A ++E + DG V
Sbjct: 182 --LEIPEPLRRRIVQFADGDARQCLNLLEIIADFA--------LEENGRFVVDDGLIDKV 231
Query: 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPL 422
L +D+ GE Y+ ISALHKS+RG+D DA++YWL+R+L+GG P
Sbjct: 232 LTEGLR-----------RFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPF 280
Query: 423 YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISI 482
Y+ARR+VR ASED+G ADP AL A+ ++ LG PE + +AQ V Y A A KS ++
Sbjct: 281 YVARRVVRMASEDIGNADPRALQLALDAWETFERLGTPEGELAIAQAVVYCACAAKSNAV 340
Query: 483 YRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDP---SAKQSFLP 539
Y+A AA + ++ S G E VPL+LRNAPT+LMK + YGK Y Y D+ +A +LP
Sbjct: 341 YKAFNAASREVK-STGSLE-VPLYLRNAPTRLMKSLDYGKDYRYAHDESDGFAAGVDYLP 398
Query: 540 PSLEGYKF 547
SL G ++
Sbjct: 399 ESLIGRRY 406
>sp|Q50739|Y2559_MYCTU Uncharacterized AAA domain-containing protein Rv2559c/MT2636
OS=Mycobacterium tuberculosis GN=Rv2559c PE=3 SV=1
Length = 452
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 182/440 (41%), Positives = 265/440 (60%), Gaps = 39/440 (8%)
Query: 105 LKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFW 164
+ + HD+ ++ APL+ RMRP ++++VVGQDHLL+P S LR V + + S+I +
Sbjct: 17 MTSGHDLGASAG-----APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILY 71
Query: 165 GPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVD 224
GPPG+GKTTLA I S A +F LSA+++GVK+VR +E++RK + ++TVLF+D
Sbjct: 72 GPPGSGKTTLAALI--SQATGRRFEALSALSAGVKEVRAVIENSRKALLH-GEQTVLFID 128
Query: 225 EVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284
EVHRF+K+QQD+ L +E ++ + ATTENPSF ++ PLLSR +L L PL D +
Sbjct: 129 EVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAV 188
Query: 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVK 344
++RA+DD GL ++V V +A++ L GDAR AL ALE++A A +
Sbjct: 189 VQRAIDD-PRGLGRAVA-----VAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELV 242
Query: 345 EVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDA 404
V+ +E+ ++D A + YDR G++HY+++SA KS+RG+D
Sbjct: 243 SVQTIER--------------SVDKAA-------VRYDRDGDQHYDVVSAFIKSVRGSDV 281
Query: 405 DAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464
DAA+++LARML GE P +IARRL+ ASED+G+A P AL AV+ Q +GMPE +
Sbjct: 282 DAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQL 341
Query: 465 ILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGY 524
LA +LA APKS ++ AL AA I+ G+ VP HLR+ +G +GY
Sbjct: 342 TLAHATIHLATAPKSNAVTTALAAAMNDIK--AGKAGLVPAHLRDGHYSGAAALGNAQGY 399
Query: 525 IYTPDDPSA--KQSFLPPSL 542
Y+ DDP Q + P L
Sbjct: 400 KYSHDDPDGVVAQQYPPDEL 419
>sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0508 PE=4
SV=1
Length = 599
Score = 275 bits (702), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 239/431 (55%), Gaps = 53/431 (12%)
Query: 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT--- 173
+ + PLSE +RP + D VGQDH+ +LR + + + S I +GPPG+GKT+
Sbjct: 1 MSISEKPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFS 60
Query: 174 LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233
L K N + V LS+ GV ++++ ++ +LR K K+ +LF+DE+HR NK+Q
Sbjct: 61 LLKRYFNG-----EVVYLSSTVHGVSEIKNVLKRGEQLR-KYGKKLLLFLDEIHRLNKNQ 114
Query: 234 QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVN 293
Q + +E G IV + TTENPSF ++ LLSRCR+L L D+ +LK+A + +N
Sbjct: 115 QMVLVSHVERGDIVLVATTTENPSFVIVPALLSRCRILYFKKLSDEDLMKILKKATEVLN 174
Query: 294 NGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353
L +SV + + +GDAR LN LEI V K +
Sbjct: 175 IDLEESVEKA-----------IVRHSEGDARKLLNTLEI------VHQAFKNKR------ 211
Query: 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413
VTL+D E Y + E HY+ SA KSMRG+D +AA+Y+L +
Sbjct: 212 -----------VTLEDL-ETLLGNVSGYTK--ESHYDFASAFIKSMRGSDPNAAVYYLVK 257
Query: 414 MLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYL 473
M+E GE P +IARR++ FASEDVGLADP AL+ AVS A +G+PEC + L +C YL
Sbjct: 258 MIEMGEDPRFIARRMIIFASEDVGLADPNALHIAVSTSIAVEHVGLPECLMNLVECAVYL 317
Query: 474 ALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPD-DPS 532
+LAPKS S+Y A+ Q++ E VPL LRN T+ MK+ GYG+GY+Y D
Sbjct: 318 SLAPKSNSVYLAMKKVQEL------PVEDVPLFLRNPVTEEMKKRGYGEGYLYPHDFGGF 371
Query: 533 AKQSFLPPSLE 543
K ++LP L+
Sbjct: 372 VKTNYLPEKLK 382
>sp|O34528|YRVN_BACSU Uncharacterized AAA domain-containing protein YrvN OS=Bacillus
subtilis (strain 168) GN=yrvN PE=3 SV=1
Length = 421
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/428 (36%), Positives = 248/428 (57%), Gaps = 36/428 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
PL+ RMRP I D++GQ HL++ + ++ V + L S+I +GPPG GKT++A AI S
Sbjct: 3 PLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGST 62
Query: 183 AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE 242
+++++ L+AV + KD+ ++A K + + +L +DEVHR +K +QD LP +E
Sbjct: 63 SIAFR--KLNAVINNKKDMEIVAQEA-----KMSGQVILILDEVHRLDKGKQDFLLPYLE 115
Query: 243 DGSIVFIGATTENPSFHLITPLL-SRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
+G I+ IGATT NP +H I P + SR ++ L PL P ++ L+RA+ D + GL G
Sbjct: 116 NGMIILIGATTANP-YHAINPAIRSRTQIFELEPLTPELIKQALERALHDEHRGL----G 170
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361
V ++ A+E C GD R ALNALE++ ++ ++ +DG
Sbjct: 171 TYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLST--------------KESADG---- 212
Query: 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQP 421
+TL+ A+E Q K ++D+ G+ HY+++SA KS+RG+DA+AA+++LAR++E G+
Sbjct: 213 EIHITLETAEECLQKKSFSHDKDGDAHYDVLSAFQKSIRGSDANAALHYLARLIEAGDLE 272
Query: 422 LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIS 481
IARRL+ A ED+GLA P A + ++ Q +G PE + LA V L L+PKS S
Sbjct: 273 -SIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAVIELCLSPKSNS 331
Query: 482 IYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIY--TPDDPSAKQSFLP 539
A+ A IR G+ VP HL++A K +E+G G Y Y D+ +Q +LP
Sbjct: 332 AILAIDEALADIR--AGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLP 389
Query: 540 PSLEGYKF 547
L+ ++
Sbjct: 390 DPLKNKQY 397
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181
P E+ RP N++D++GQ +++ L+ V +P+++F GP G GKTT A A+V +
Sbjct: 3 GPWVEKYRPQNLDDIIGQKQIVNR---LQKYVGEESMPNLMFTGPAGVGKTTTAIALVKA 59
Query: 182 VAVSY---KFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+ Y F+ L+A + G+ VR+ +++ +L+ ++F+DEV K Q +
Sbjct: 60 ILGEYWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHAL 119
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
+E + + N S +I P+ SRC + P+K +++ N L
Sbjct: 120 RREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKG-----------EEIANRLK 168
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
R E IE + +GD R A+N L+ +A
Sbjct: 169 YICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQAAA 205
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI 178
+ + P E+ RP ++D+VGQ+H++ L+ V +P+++F GP G GKTT A A+
Sbjct: 3 IMNGPWVEKYRPQKLDDIVGQEHIIPR---LKRYVEEKSMPNLMFTGPAGVGKTTAALAL 59
Query: 179 VNSVAVSY---KFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQ 234
+ Y F+ L+A + G+ VR ++++ +L+ ++F+DEV K Q
Sbjct: 60 AREILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQ 119
Query: 235 DSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
+ +E + + N S +I P+ SRC + PLK H + L+ + N
Sbjct: 120 HALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN- 178
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+E A+E + +GD R A+N L+ +A
Sbjct: 179 ----------LEYEAHALETIVYFAEGDLRKAINLLQSAA 208
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 18/218 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP ++D+VG + S L+ + N LP ++F GP G GKTT A AI V
Sbjct: 16 EKYRPQTLDDIVGHE---SITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGD 72
Query: 186 ---YKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ L+A G+ VRD ++ + ++F+DE Q + +
Sbjct: 73 DWRENFLELNASDQRGIDVVRDRIKSFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 132
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E S + N S +I P+ SRC V +PL AVD+ ++ + G
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDA--------AVDEQIRIIADTEG 184
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
+E+ D ++ L DGD R A+N L+ +A+
Sbjct: 185 ---IELTDDGVDALVYAADGDMRKAINGLQAAAVMGGT 219
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 37/289 (12%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAI-VNSVA 183
+E+ RP ++DV+G+D ++ L+S V + LP +IF GP GTGKT+ A A+ +
Sbjct: 6 TEKYRPKRLDDVIGEDENINT---LKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFG 62
Query: 184 VSYK--FVCLSAVTS-GVKDVRDAVEDARKLRVKSNKR--TVLFVDEVHRFNKSQQDSFL 238
+K F+ L+A G+ +R+ ++D K+R SNK ++F+DE + Q +
Sbjct: 63 DDWKENFLELNASDERGIDIIRNNIKDFAKIR-PSNKLGFKIIFLDEADQLTNEAQAALR 121
Query: 239 PVIEDGSIVFIGAT----TENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNN 294
+E +F T + N S +I P+ SRC VL PL +E L+ +
Sbjct: 122 RTME----MFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKN--- 174
Query: 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354
+ +++ D+++ + DGD R A+N ++ AI + + ++ E+ E
Sbjct: 175 --------EKFDIDDDSLDAIYEISDGDMRKAINVMQ--AIQSTGEIKPSKIYEISGEIN 224
Query: 355 SDGCSPYVALV---TLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR 400
+ ++L DAK + Y +G ++I +H ++R
Sbjct: 225 KNEYKNLISLSLNGAFSDAKSLLDKMLVDYGLSG---IDIIRGMHSAIR 270
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 34/325 (10%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-A 183
+E+ RP ++++V Q+ ++S L+ V +P ++F GPPGTGKTT A + + +
Sbjct: 14 AEKYRPKTLDEIVDQEEIVSR---LKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG 70
Query: 184 VSYKFVCLSAVTS---GVKDVRDAVEDARKLRVKSN-KRTVLFVDEVHRFNKSQQDSFLP 239
+Y+ L S G+ +R V++ + RV +N ++ +DE Q +
Sbjct: 71 ENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQALRR 130
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
++E + N +I P+ SRC V PLK DV LK +
Sbjct: 131 LMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQ-------- 182
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRV-PVKEVKEVEQEDESDGC 358
+VE++ +A+E + +GD R A+N L+ +A V V V +V + E
Sbjct: 183 ---EKVEIDEEALEAIHDLSEGDMRRAINILQAAAALGKVTVDSVYKVVGLAHPREIRQM 239
Query: 359 SPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND-----------ADAA 407
+DA+E + + Y +G ++I +H+ + D AD A
Sbjct: 240 IQLALAGNFNDAREKLRELMINYGLSG---VDVIKQVHREIFSTDIKIPDEFKIIIADLA 296
Query: 408 IYWLARMLEGGEQPLYIARRLVRFA 432
R++EG + + + L R A
Sbjct: 297 GEIQFRLVEGADDEIQLNAFLARLA 321
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-AV 184
E+ RP ++DV+G ++++ L+S V N L ++F GP GTGKTT A AI +
Sbjct: 18 EKYRPQTLDDVMGHENIVGR---LKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 185 SYK--FVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
++ F+ L+A G+ VRD +++ + + ++F+DE Q + +
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 242 EDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
E S + FI + N S +I P+ SRC V +PL A D V +
Sbjct: 135 EQFSNNVRFILSC--NYSSQIIDPIQSRCAVFRFSPL-----------ADDAVAEEIRTI 181
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
+E+ D ++ L DGD R A+N L+ ++++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSG 219
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP ++DVVGQ+ ++ L+ V LP+I+F G G GKTT A A+ S+
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGR---LKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSL 60
Query: 183 AVSY---KFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238
Y F+ L+A + G+ VR+ ++ KL+ ++F+DEV K Q +
Sbjct: 61 LGEYWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGAPFRIIFLDEVDNMTKDAQQALR 120
Query: 239 PVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298
+E + + N S +I P+ SRC + +P+K ++ +KR L
Sbjct: 121 REMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANI---IKR--------LKY 169
Query: 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333
+E A+E + GD R ++N L+ S
Sbjct: 170 IASEEGIEAEQSALENIVYFTQGDMRKSINILQAS 204
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 19/219 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP + ++VV + + S LR V S +P ++F+GPPGTGKTT+A + +
Sbjct: 8 EKYRPRSFDEVVDLEEV---KSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 186 Y----KFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y ++ G+ +R+ V++ AR V ++ +DE Q + +
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E + N +I P++SRC V +P+ H + LK ++KS
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKY--------IAKSE 176
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
G VEV DAI+ + +GD R A+N L+++A T +
Sbjct: 177 G---VEVKEDAIDLIYELSEGDMRKAINILQVAAATNKI 212
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 19/218 (8%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-- 182
+E+ RP + DV+G + L S V S LP ++F GPPG GKT A A+ +
Sbjct: 8 TEKYRPRRLEDVIGHQQI---TRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG 64
Query: 183 -AVSYKFVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F+ L+A G+ VR+ +++ AR + K ++F+DE Q +
Sbjct: 65 ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFLDEADALTSDAQSALRR 124
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E + + N S +I P+ SRC V PL D+ G+++
Sbjct: 125 TMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNAT-----------DITTGITRI 173
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
+++ D ++ L GD R A+NAL+ +A A
Sbjct: 174 AKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIA 211
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
GN=rfc2 PE=3 SV=1
Length = 338
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 128/285 (44%), Gaps = 28/285 (9%)
Query: 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LA 175
P P E+ RP+ I D+VG + +S L S LP+II GPPGTGKT+ LA
Sbjct: 18 PLLPWVEKYRPILIKDIVGNEETVSR---LESISKDGNLPNIIISGPPGTGKTSSILCLA 74
Query: 176 KAIVNSVAVSYKFVC--LSAVTSGVKD-VRDAVED--ARKLRVKSNKRTVLFVDEVHRFN 230
+A++ + +YK L+A D VRD ++ +K+ + + + ++ +DEV
Sbjct: 75 RALLGA---NYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMT 131
Query: 231 KSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290
Q + ++E S A N S +I P+ SRC VL L D +IL +
Sbjct: 132 SGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRL--SDSQILTR---- 185
Query: 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350
L + V +V D + + +GD R ALN L+ + + + + V +V
Sbjct: 186 -----LREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGL-INAENVTKVC 239
Query: 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISAL 395
+ +AL D KEA+ +D G ++ISAL
Sbjct: 240 DQPHPLIIKQIIALCAKSDFKEAYPFLKKLWDD-GYSSIDIISAL 283
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
HA E+ RP + D++GQ ++ LRS V +P ++F G GTGKTT A A+
Sbjct: 5 HAIWIEKYRPRVLEDIIGQQEIIER---LRSYVAKREMPHLLFTGNAGTGKTTAAVALAR 61
Query: 181 SVA---VSYKFVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
F L+A G+ VR+ ++ AR + +LF+DE Q
Sbjct: 62 EFFGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFGGSTFKILFLDEADALTTDAQS 121
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E + + N S +I P+ SRC + PL V ++KR D N
Sbjct: 122 ALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQN-- 179
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335
+ V + I+ + GD R A+NAL+ +AI
Sbjct: 180 ---------LTVTEEVIDAIFYVAQGDMRKAINALQGAAI 210
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 19/214 (8%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV 182
P E+ RP +++V G + +++ ++ V +LP ++F GPPGTGKTT A+ +
Sbjct: 18 PWVEKYRPTTLDEVAGHEGVITT---IKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQI 74
Query: 183 -AVSYKFVCLSAVTS---GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237
+Y+ + L S G+ VRD ++ A ++ S+ ++ +DE + Q++
Sbjct: 75 YGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQNAL 134
Query: 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
+IE S N + L LLSRC +PLK D + + L+
Sbjct: 135 RRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKE-----------DAIKHRLA 183
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ V+++ +A + L GD R ALN L+
Sbjct: 184 HVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQ 217
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 122/291 (41%), Gaps = 48/291 (16%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP + ++VV + + + LR V +P ++F+GPPGTGKTT+A + +
Sbjct: 8 EKYRPRSFDEVVDLEEV---KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 186 Y----KFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y ++ G+ +R+ V++ AR V ++ +DE Q + +
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 241 IEDGSIVFIGATTENPSFHL--------ITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
+E +N F L I P+ SR ++ +PL V L+ D
Sbjct: 125 ME--------MYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAD-- 174
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352
N G V+++ DA+E + GD R A+NAL+I+A T KE+ E
Sbjct: 175 NEG---------VKISDDALEAIYEFTQGDMRRAINALQIAATTG------KEITEETVA 219
Query: 353 DESDGCSPYVALVTLDDA------KEAFQCKHLAYDRAGEEHYNLISALHK 397
SP + TL+DA K A Q D G ++ LH+
Sbjct: 220 KALGMVSPRLLRETLNDAFRGNFGKAATQIYGFVVD-GGIGELEIVKQLHR 269
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 27/287 (9%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-A 183
+E+ RP +++D+V Q ++ L+ V +P ++F GPPGTGKTT A A+V+ +
Sbjct: 10 AEKYRPRSLDDIVNQKDIVER---LKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 184 VSYK--FVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+Y+ F+ L+A G+ +R+ V++ AR + + V+ +DE Q +
Sbjct: 67 DNYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALRR 126
Query: 240 VIE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
+E + FI A N +I P+ SR + PLK DV + R L+
Sbjct: 127 TMELYTETTRFILAC--NYLSKIIEPIQSRTALFRFYPLKKEDV---VAR--------LA 173
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRV-PVKEVKEVEQEDESD 356
+VE + A+E + GD R A+N L+ S++ V V V +V + Q E
Sbjct: 174 YIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYGKVTVEAVYKVLGLAQPKEIR 233
Query: 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND 403
A+E + + Y +GE ++I +H+ + GN+
Sbjct: 234 EMIMLALQGNFLKAREKLRELLVNYGLSGE---DIIKQIHREVTGNE 277
>sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1
Length = 352
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RPV +N++VG + +S L +P+II GPPGTGKTT LA+A+
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 91
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
+ ++ G+ VR+ ++ +K+ + + ++ +DE Q +
Sbjct: 92 LGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 151
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
+E S A N S +I P+ SRC VL L D++IL + L
Sbjct: 152 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT--DMQILAR---------L 200
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ +V+ D +E + GD R ALN L+
Sbjct: 201 LSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQ 235
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
Length = 354
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAKAI 178
P E+ RPV +N++VG + +S L +P+II GPPGTGKTT LA+A+
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 93
Query: 179 VNSVAVSYKFVCLSAVTSGVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236
+ ++ G+ VR+ ++ +K+ + + ++ +DE Q +
Sbjct: 94 LGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQA 153
Query: 237 FLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296
+E S A N S +I P+ SRC VL L D +IL + L
Sbjct: 154 LRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT--DAQILTR---------L 202
Query: 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331
+ RV D +E + GD R ALN L+
Sbjct: 203 MNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 19/214 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP + +VV + + + LR V + LP ++F+GPPGTGKTT+A + +
Sbjct: 8 EKYRPRSFEEVVDLEEV---KARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 186 Y----KFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y ++ G+ +R+ V++ AR V ++ +DE Q + +
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E + N +I P++SRC V +P+ H + L+ +++S
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLRE--------IARSE 176
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
G VE+ DAI+ + +GD R A+N L+++A
Sbjct: 177 G---VELKDDAIDLIYEISEGDMRKAINLLQVAA 207
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP + ++VV + + + LR V +P ++F+GPPGTGKTT+A + +
Sbjct: 8 EKYRPRSFDEVVDLEEV---KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 186 Y----KFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y ++ G+ +R+ V++ AR V ++ +DE Q + +
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E + N +I P++SRC V +P+ + L+ ++KS
Sbjct: 125 MEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRH--------IAKSE 176
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
G +E+ DAI+ + +GD R A+N L+++A T+ V
Sbjct: 177 G---IELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKV 212
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 19/221 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-AV 184
E+ RP +++D+V Q H++ L+ V +P ++F GPPGTGKTT A A+ + +
Sbjct: 11 EKYRPRSLDDIVDQKHVVER---LKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGE 67
Query: 185 SYKFVCLSAVTS---GVKDVRDAVEDARKLRVKSN-KRTVLFVDEVHRFNKSQQDSFLPV 240
+Y+ L S G+ +R+ V++ + R ++ +DE Q + +
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRL 127
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E S V N +I P+ SRC PL DV L+ + N G
Sbjct: 128 MELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAE--NEG----- 180
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRV 341
V+ +A++ + +GD R A+N L+ ++ V V
Sbjct: 181 ----VDYEEEALDAIYEISEGDMRKAINVLQAASYLGKVTV 217
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 35/224 (15%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP + ++VV + + S LR V S +P ++F+GPPGTGKTT+A + +
Sbjct: 8 EKYRPRSFDEVVDLEEV---KSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 186 Y----KFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y ++ G+ +R+ V++ AR V ++ +DE Q + +
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 241 IEDGSIVFIGATTENPSFHL--------ITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV 292
+E +N F L I P+ SR ++ NPL P + I R + +
Sbjct: 125 ME--------IYAQNTRFILLANYISGIIEPIQSRVVMIRFNPL-PKEAVISRLRYIAE- 174
Query: 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336
N G V+++ DA+E + GD R A+NAL+I+A T
Sbjct: 175 NEG---------VKISDDALETIYEFTQGDMRKAINALQIAAAT 209
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 42/329 (12%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-A 183
+E+ RP +++++V Q ++ L+ V +P ++F GPPGTGKTT A A+V +
Sbjct: 8 AEKYRPKSLDEIVNQKEIVER---LKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYG 64
Query: 184 VSYK--FVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
+Y+ F+ L+A G+ +R+ V++ AR + + V+ +DE Q +
Sbjct: 65 NNYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQALRR 124
Query: 240 VIE--DGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLS 297
+E + FI A N +I P+ SR + PLK +DV N L
Sbjct: 125 TMELYTETTRFILAC--NYLSKIIEPIQSRTALFRFYPLKK-----------EDVVNRLI 171
Query: 298 KSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDG 357
+ +VE + IE + GD R A+N I A +A ++ V+ V +V +
Sbjct: 172 QIAKNEKVEFDPKGIETIFDITQGDMRKAINV--IQAASAYGKITVETVYKVLGLAQPKE 229
Query: 358 CSPYVALV---TLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGND----------- 403
+ L A++ + + Y +GE ++I +HK + GN+
Sbjct: 230 IREMLHLALSGKFLQARDKLRELLINYGLSGE---DIIKQVHKELTGNEISIPDDLKVIL 286
Query: 404 ADAAIYWLARMLEGGEQPLYIARRLVRFA 432
D A R++EG + + ++ L + A
Sbjct: 287 VDYAGEVEFRIMEGADDEIQLSAFLAKLA 315
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
H E+ RP + D+VGQD ++ L S V S LP ++F G G GKTT A +
Sbjct: 5 HTIWIEKYRPAKLADIVGQDDIVER---LSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAR 61
Query: 181 SV---AVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKR-TVLFVDEVHRFNKSQQD 235
+ F L+A G+ VR+ +++ + R + +LF+DE Q
Sbjct: 62 EFFGDSWQMNFRELNASDERGIDVVRNQIKEFARTRPAGDAAFKILFLDEADALTTDAQA 121
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E + + N S +I P+ SRC + PL P V+
Sbjct: 122 ALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVK-----------EE 170
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAA 338
+++ ++V +A++ + GD R A+NAL+ +AI +A
Sbjct: 171 ITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSA 213
>sp|Q183N8|RUVB_CLOD6 Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
difficile (strain 630) GN=ruvB PE=3 SV=1
Length = 339
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 114 TTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGK 171
T+ + + + +RP + D +GQ+ S+ A S +L ++ +GPPG GK
Sbjct: 12 TSTMKMEDIDIENSLRPKTLEDYLGQEKSKEQLSIFIEAAKSRNEQLDHVLLYGPPGLGK 71
Query: 172 TTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231
TTLA I N + V+ + +TSG R D + N+ VLF+DE+HR N+
Sbjct: 72 TTLASIIANEMGVNLR------ITSGPAIERAG--DLAAILTNLNENDVLFIDEIHRINR 123
Query: 232 SQQDSFLPVIEDGSI-VFIGATTENPSFHLITPLL------SRCRVLTLNPLK 277
S ++ P +ED + + IG S L P +R +LT NPL+
Sbjct: 124 SVEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLT-NPLR 175
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1
Length = 349
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 31/241 (12%)
Query: 97 EPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN 156
EPSP V S TA H P E+ RP+ +N++VG + +S L
Sbjct: 17 EPSP----------VPSKTAGHY-ELPWVEKYRPLKLNEIVGNEDTVSR---LEVFAREG 62
Query: 157 RLPSIIFWGPPGTGKTT----LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVE--DARK 210
+P+II GPPGTGKTT LA+A++ ++ G+ VR+ ++ +K
Sbjct: 63 NVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQK 122
Query: 211 LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRV 270
+ + + ++ +DE Q + +E S A N S +I P+ SRC V
Sbjct: 123 VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV 182
Query: 271 LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330
L L D ++L + L + +V D +E + GD R ALN L
Sbjct: 183 LRYTKLT--DAQVLTR---------LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNL 231
Query: 331 E 331
+
Sbjct: 232 Q 232
>sp|Q0SRN3|RUVB_CLOPS Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
perfringens (strain SM101 / Type A) GN=ruvB PE=3 SV=1
Length = 346
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 128 MRPVNINDVVGQDHLLSP-NSLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP IN+ +GQD + N +++A L +I +GPPG GKTTLA I N + +
Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRRGEALDHVILYGPPGLGKTTLANIIANEMGGN 80
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
K +TSG R D + N VLF+DE+HR N+S ++ P +ED
Sbjct: 81 LK------ITSGPAIERAG--DLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYV 132
Query: 246 I-VFIGATTENPSFHLITP 263
+ + IG + S L P
Sbjct: 133 LDIIIGKGAASKSIRLDLP 151
>sp|Q8XJ14|RUVB_CLOPE Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
perfringens (strain 13 / Type A) GN=ruvB PE=3 SV=1
Length = 346
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNR--LPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP IN+ +GQD + ++ A L +I +GPPG GKTTLA I N + +
Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
K +TSG R D + N VLF+DE+HR N+S ++ P +ED
Sbjct: 81 LK------ITSGPAIERAG--DLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYV 132
Query: 246 I-VFIGATTENPSFHLITP 263
+ + IG + S L P
Sbjct: 133 LDIIIGKGAASKSIRLDLP 151
>sp|Q0TP13|RUVB_CLOP1 Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
GN=ruvB PE=3 SV=1
Length = 346
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNR--LPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
+RP IN+ +GQD + ++ A L +I +GPPG GKTTLA I N + +
Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80
Query: 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245
K +TSG R D + N VLF+DE+HR N+S ++ P +ED
Sbjct: 81 LK------ITSGPAIERAG--DLAAILTTLNTNDVLFIDEIHRLNRSVEEILYPAMEDYV 132
Query: 246 I-VFIGATTENPSFHLITP 263
+ + IG + S L P
Sbjct: 133 LDIIIGKGAASKSIRLDLP 151
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV-- 182
+E+ RP I+D++ Q+ + L+S V +P ++F GPPGTGKTT A A+ + +
Sbjct: 5 TEKYRPKRIDDIINQEEI---KKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG 61
Query: 183 -AVSYKFVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
A F+ L+A G+ +R V++ AR + ++F+DE + Q +
Sbjct: 62 DAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVFLDEADALTRDAQQALRR 121
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
++E S + N +I P+ SR V PL+ L+ R V
Sbjct: 122 IMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKG-------- 173
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
G +E + I L +GD R A+N L+ +A+ +
Sbjct: 174 -EGLILENEDEIINALYDIAEGDLRKAINILQAAAMMS 210
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT----LAK 176
P E+ RP N+++VVG ++ L++ V +P ++F G PG GKTT LAK
Sbjct: 2 QKPWVEKYRPENLDEVVGHQEIIKR---LKNYVEKKSMPHLLFSGSPGVGKTTAALCLAK 58
Query: 177 AIVNSVAVSYKFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ + S+ G+ +R V+D AR + V+F+DE Q+
Sbjct: 59 DLYGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E S + + N +I P+ SRC + +PLK D+ LK + +
Sbjct: 119 ALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESIN 178
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
+ KS DAI ++ +GD R A+N L+ A
Sbjct: 179 VEKS--------GMDAIIYV---SEGDMRKAINVLQTGA 206
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=dnaX PE=3 SV=1
Length = 681
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 47/279 (16%)
Query: 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAI---- 178
L ++ RP +D VGQD + ++ +A+ ++LP IF G GTGKTT AK I
Sbjct: 5 LYQKYRPTKFSDTVGQDSI---KRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAI 61
Query: 179 ------------------VNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTV 220
+NS + F +A +G+ D+R+ E+ L K K+ V
Sbjct: 62 NCLNWNGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKK-V 120
Query: 221 LFVDEVHRFNKSQQDSFLPVIEDG--SIVFIGATTENPSFHLI-TPLLSRCRVLTLNPLK 277
+DE H L +E+ ++FI ATTE F+ I +LSRC+
Sbjct: 121 YILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTE---FNKIPITILSRCQ-------- 169
Query: 278 PHDVEILLKRAVDD-VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL-EISAI 335
K+ +D + L++ +++ DA+ L G R L+ L +IS
Sbjct: 170 ----SFFFKQITNDLIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNF 225
Query: 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAF 374
+ + + + +V++ + + ++ V D K++F
Sbjct: 226 SESKTISLADVEKTFNLLDKEQKFGFIEAVLSGDLKQSF 264
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2
SV=1
Length = 349
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 31/241 (12%)
Query: 97 EPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN 156
EPSP V S T H P E+ RPV +N++VG + +S L
Sbjct: 17 EPSP----------VPSKTTGHY-ELPWVEKYRPVKLNEIVGNEDTVSR---LEVFAREG 62
Query: 157 RLPSIIFWGPPGTGKTT----LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVE--DARK 210
+P+II GPPGTGKTT LA+A++ ++ G+ VR+ ++ +K
Sbjct: 63 NVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQK 122
Query: 211 LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRV 270
+ + + ++ +DE Q + +E S A N S +I P+ SRC V
Sbjct: 123 VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV 182
Query: 271 LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330
L L D ++L + L + +V D +E + GD R ALN L
Sbjct: 183 LRYTKLT--DAQVLSR---------LMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNL 231
Query: 331 E 331
+
Sbjct: 232 Q 232
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 19/219 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS 185
E+ RP + ++VV + + + LR V + +P ++F+GPPGTGKTT+A + +
Sbjct: 8 EKYRPRSFDEVVDLEEV---KARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 186 Y----KFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPV 240
Y ++ G+ +R+ V++ AR V ++ +DE Q + +
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 241 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300
+E + N +I P++SRC V +P+ + LK ++K+
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLK--------FIAKNE 176
Query: 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339
G VE+ DAI + +GD R A+N L+++A T V
Sbjct: 177 G---VELREDAINMIYELSEGDMRKAINLLQVAAATNKV 212
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKT----TLAKAIVNS 181
E+ RPV +N V GQD + L+S V + LP ++F GPPG GKT ++A+ I
Sbjct: 17 EKYRPVRLNQVAGQDETIER---LKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
Query: 182 VAVSYKFVCLSAVTS-GVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLP 239
F L+A G+ VR+ +++ A+ + ++F+DE Q +
Sbjct: 74 DLWRENFTELNASDERGIDIVRNKIKNFAKTAPIGGAPFKIIFLDEADALTADAQSALRR 133
Query: 240 VIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299
+E S + N S +I P+ SRC V L ++ L+ D GLS +
Sbjct: 134 TMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGD--QGLSIT 191
Query: 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335
GG E L GD R A+N+L+ +A
Sbjct: 192 EGG---------YEALIYVAQGDMRKAVNSLQAAAF 218
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV--- 182
E+ RP + DVVG + L+S V + LP ++F GP GTGKT + +I +
Sbjct: 14 EKYRPERLEDVVGHPDI---TERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD 70
Query: 183 AVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ L+A G+ VRD ++D + + V+F+DE Q + +
Sbjct: 71 DWQDNFLELNASDERGIDVVRDRIKDFARSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E S + N S +I P+ SRC V L V L+ ++++ G
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLRE--------IAETEG 182
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
+E D I+ L DGD R A+NAL+ ++ T
Sbjct: 183 ---LEHTDDGIDALVYAADGDMRRAINALQAASATG 215
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV--- 182
E+ RP + DVVG + L+S V + LP ++F GP GTGKT + +I +
Sbjct: 14 EKYRPERLEDVVGHPDI---TERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD 70
Query: 183 AVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241
F+ L+A G+ VRD ++D + + V+F+DE Q + +
Sbjct: 71 DWQDNFLELNASDERGIDVVRDRIKDFARSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 242 EDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301
E S + N S +I P+ SRC V L V L+ ++++ G
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLRE--------IAETEG 182
Query: 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337
+E D I+ L DGD R A+NAL+ ++ T
Sbjct: 183 ---LEHTDDGIDALVYAADGDMRRAINALQAASATG 215
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 19/219 (8%)
Query: 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180
P E+ RP +++VVG ++ L + V +P ++F G PG GKTT A A+
Sbjct: 2 QKPWVEKYRPQTLSEVVGHHEIIKR---LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 181 SV---AVSYKFVCL-SAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKSQQD 235
+ F+ L S+ G+ +R V+D AR + V+F+DE Q+
Sbjct: 59 DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 236 SFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNG 295
+ +E S + + N +I P+ SRC + +PLK D+ LK + N
Sbjct: 119 ALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLT 178
Query: 296 LSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334
L K GG DAI ++ +GD R A+N L+ +A
Sbjct: 179 LEK--GGI------DAIIYV---SEGDMRKAINVLQTAA 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,357,940
Number of Sequences: 539616
Number of extensions: 8986004
Number of successful extensions: 36781
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 1032
Number of HSP's that attempted gapping in prelim test: 34283
Number of HSP's gapped (non-prelim): 2432
length of query: 558
length of database: 191,569,459
effective HSP length: 123
effective length of query: 435
effective length of database: 125,196,691
effective search space: 54460560585
effective search space used: 54460560585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)