Query 008664
Match_columns 558
No_of_seqs 638 out of 5384
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2256 MGS1 ATPase related to 100.0 2E-116 5E-121 874.0 38.8 400 122-552 12-413 (436)
2 KOG2028 ATPase related to the 100.0 2E-109 5E-114 807.3 31.6 413 120-548 124-541 (554)
3 PRK13342 recombination factor 100.0 1.1E-89 2.4E-94 728.1 41.0 391 123-552 1-394 (413)
4 PRK13341 recombination factor 100.0 2.2E-88 4.8E-93 749.3 39.1 405 120-552 14-420 (725)
5 PRK14700 recombination factor 100.0 1.8E-83 3.9E-88 626.8 27.2 278 238-552 1-280 (300)
6 PF12002 MgsA_C: MgsA AAA+ ATP 100.0 4E-59 8.7E-64 420.1 11.6 150 401-552 1-152 (168)
7 PRK14962 DNA polymerase III su 100.0 1.1E-47 2.4E-52 408.6 31.0 299 122-471 2-327 (472)
8 PRK14956 DNA polymerase III su 100.0 2.8E-39 6E-44 338.5 33.3 306 119-475 3-368 (484)
9 PRK14949 DNA polymerase III su 100.0 1.5E-36 3.3E-41 333.7 28.1 261 120-431 2-288 (944)
10 KOG0989 Replication factor C, 100.0 1E-34 2.2E-39 280.3 23.5 281 121-451 23-318 (346)
11 PLN03025 replication factor C 100.0 3.9E-34 8.4E-39 293.8 28.3 260 122-432 1-268 (319)
12 PRK14964 DNA polymerase III su 100.0 5.7E-34 1.2E-38 302.0 26.4 315 123-489 2-367 (491)
13 PRK07994 DNA polymerase III su 100.0 8.1E-34 1.8E-38 308.9 26.4 255 120-425 2-282 (647)
14 PRK07003 DNA polymerase III su 100.0 3.7E-33 7.9E-38 301.7 26.7 259 120-429 2-286 (830)
15 PRK14960 DNA polymerase III su 100.0 3.7E-33 8.1E-38 299.2 25.9 308 121-479 2-362 (702)
16 PRK06645 DNA polymerase III su 100.0 6.6E-33 1.4E-37 296.3 27.4 261 118-426 5-295 (507)
17 PRK14958 DNA polymerase III su 100.0 3.7E-33 7.9E-38 300.3 25.2 259 120-429 2-286 (509)
18 PRK07764 DNA polymerase III su 100.0 1.6E-32 3.5E-37 307.9 29.9 256 122-427 3-286 (824)
19 PRK14952 DNA polymerase III su 100.0 1.1E-31 2.3E-36 291.1 35.1 309 123-481 2-368 (584)
20 PRK14957 DNA polymerase III su 100.0 1.4E-32 3.1E-37 295.3 26.7 259 120-429 2-286 (546)
21 PRK14959 DNA polymerase III su 100.0 2E-32 4.4E-37 295.4 26.3 259 120-429 2-286 (624)
22 PRK12323 DNA polymerase III su 100.0 1.8E-32 3.9E-37 293.2 25.5 259 120-429 2-291 (700)
23 PRK05896 DNA polymerase III su 100.0 3.8E-32 8.3E-37 291.8 27.0 261 121-432 3-289 (605)
24 PRK14963 DNA polymerase III su 100.0 1.1E-31 2.3E-36 288.3 30.4 298 123-475 3-340 (504)
25 PRK08691 DNA polymerase III su 100.0 4E-32 8.6E-37 294.0 25.7 259 120-429 2-286 (709)
26 PRK09111 DNA polymerase III su 100.0 1.6E-31 3.4E-36 291.4 30.6 262 117-429 7-299 (598)
27 PRK14951 DNA polymerase III su 100.0 5.7E-32 1.2E-36 294.1 26.7 259 120-429 2-291 (618)
28 PRK14965 DNA polymerase III su 100.0 1.6E-31 3.4E-36 292.8 29.5 258 121-429 3-286 (576)
29 PRK14961 DNA polymerase III su 100.0 1.9E-31 4.1E-36 278.1 26.4 261 120-431 2-288 (363)
30 COG2812 DnaX DNA polymerase II 100.0 3.2E-32 6.9E-37 287.4 20.3 259 120-429 2-286 (515)
31 PRK06647 DNA polymerase III su 100.0 3.9E-31 8.5E-36 287.1 28.2 322 121-496 3-381 (563)
32 PRK05563 DNA polymerase III su 100.0 5.7E-31 1.2E-35 287.1 27.9 259 120-429 2-286 (559)
33 KOG0991 Replication factor C, 100.0 1.9E-31 4.2E-36 247.3 19.7 264 118-432 11-282 (333)
34 PRK08451 DNA polymerase III su 100.0 5.1E-30 1.1E-34 274.2 33.0 317 122-493 2-352 (535)
35 PRK07133 DNA polymerase III su 100.0 9.9E-31 2.1E-35 286.0 27.6 317 119-486 3-365 (725)
36 PF05496 RuvB_N: Holliday junc 100.0 5.1E-32 1.1E-36 255.2 14.5 198 119-338 9-230 (233)
37 PRK06305 DNA polymerase III su 100.0 1.2E-30 2.5E-35 277.9 26.1 255 121-426 4-285 (451)
38 PRK14953 DNA polymerase III su 100.0 1.7E-30 3.7E-35 278.2 27.3 318 120-488 2-366 (486)
39 PRK14969 DNA polymerase III su 100.0 1.3E-30 2.8E-35 282.4 25.1 304 120-474 2-356 (527)
40 PRK14955 DNA polymerase III su 100.0 2.7E-30 5.8E-35 272.5 25.0 259 121-425 3-295 (397)
41 PRK14954 DNA polymerase III su 100.0 5.6E-30 1.2E-34 279.5 26.9 259 121-425 3-295 (620)
42 PRK14948 DNA polymerase III su 100.0 3E-29 6.4E-34 275.4 28.0 257 120-428 2-286 (620)
43 PRK14971 DNA polymerase III su 100.0 2.4E-29 5.2E-34 276.2 26.5 254 121-425 4-284 (614)
44 PRK12402 replication factor C 100.0 1.1E-28 2.5E-33 255.7 30.1 261 122-432 3-296 (337)
45 PRK14950 DNA polymerase III su 100.0 1.6E-28 3.5E-33 270.4 30.8 255 121-426 3-284 (585)
46 TIGR02397 dnaX_nterm DNA polym 100.0 9.7E-29 2.1E-33 258.2 26.8 260 121-431 1-286 (355)
47 PRK14970 DNA polymerase III su 100.0 1.7E-28 3.7E-33 257.3 26.7 257 121-428 4-274 (367)
48 PRK00440 rfc replication facto 100.0 1.9E-27 4E-32 244.7 30.3 302 120-475 3-315 (319)
49 COG2255 RuvB Holliday junction 99.9 2E-26 4.4E-31 220.7 20.5 248 124-422 16-292 (332)
50 PRK04195 replication factor C 99.9 5.8E-26 1.3E-30 245.6 26.4 255 122-431 2-267 (482)
51 PRK00080 ruvB Holliday junctio 99.9 1.8E-25 4E-30 230.6 24.3 262 121-429 12-302 (328)
52 PHA02544 44 clamp loader, smal 99.9 2E-24 4.4E-29 221.9 29.8 206 118-334 5-214 (316)
53 TIGR00635 ruvB Holliday juncti 99.9 7.9E-25 1.7E-29 223.9 23.5 241 131-422 1-270 (305)
54 KOG2035 Replication factor C, 99.9 1.1E-24 2.3E-29 207.6 15.7 291 123-431 2-343 (351)
55 TIGR02902 spore_lonB ATP-depen 99.9 8.5E-24 1.8E-28 230.0 18.3 221 121-377 52-332 (531)
56 PRK04132 replication factor C 99.9 4.3E-21 9.4E-26 214.4 29.3 224 161-432 567-800 (846)
57 TIGR02639 ClpA ATP-dependent C 99.9 3.6E-22 7.8E-27 225.9 18.4 227 120-377 168-429 (731)
58 KOG0990 Replication factor C, 99.9 9.4E-22 2E-26 191.6 16.8 237 117-376 24-271 (360)
59 COG1223 Predicted ATPase (AAA+ 99.9 1.1E-21 2.3E-26 185.5 15.2 215 121-376 108-354 (368)
60 TIGR00602 rad24 checkpoint pro 99.9 1.7E-21 3.6E-26 212.8 17.9 209 119-336 69-330 (637)
61 TIGR03345 VI_ClpV1 type VI sec 99.9 2.1E-21 4.6E-26 221.0 17.2 207 119-339 172-412 (852)
62 TIGR02928 orc1/cdc6 family rep 99.9 5.7E-20 1.2E-24 192.7 24.8 291 122-462 6-349 (365)
63 PRK09112 DNA polymerase III su 99.9 4.1E-20 8.9E-25 190.6 22.8 188 126-332 15-243 (351)
64 TIGR02903 spore_lon_C ATP-depe 99.9 2.5E-20 5.3E-25 205.9 21.7 230 121-378 141-431 (615)
65 PRK08084 DNA replication initi 99.9 1.8E-20 4E-25 183.9 18.2 198 132-375 20-234 (235)
66 COG1222 RPT1 ATP-dependent 26S 99.9 2.7E-20 5.8E-25 184.1 19.0 207 130-381 147-396 (406)
67 PRK07940 DNA polymerase III su 99.8 1.4E-20 2.9E-25 196.7 16.7 178 132-331 3-215 (394)
68 KOG1969 DNA replication checkp 99.8 1E-19 2.2E-24 193.4 22.4 202 121-339 258-520 (877)
69 PRK05564 DNA polymerase III su 99.8 1.9E-19 4E-24 184.7 22.2 178 132-330 2-191 (313)
70 PRK06893 DNA replication initi 99.8 7.6E-20 1.7E-24 178.9 18.5 204 129-375 11-228 (229)
71 PRK06620 hypothetical protein; 99.8 9.4E-20 2E-24 175.9 18.3 191 132-374 14-213 (214)
72 PRK08903 DnaA regulatory inact 99.8 1.4E-19 3.1E-24 177.1 19.2 202 128-376 12-225 (227)
73 TIGR02881 spore_V_K stage V sp 99.8 5.1E-20 1.1E-24 183.9 14.4 188 132-338 4-239 (261)
74 KOG0730 AAA+-type ATPase [Post 99.8 1.5E-19 3.2E-24 191.2 17.0 210 126-378 426-675 (693)
75 PRK07471 DNA polymerase III su 99.8 2.3E-19 5.1E-24 186.0 18.3 184 128-332 13-241 (365)
76 TIGR03420 DnaA_homol_Hda DnaA 99.8 5.6E-19 1.2E-23 172.6 17.8 201 130-374 11-225 (226)
77 PRK08727 hypothetical protein; 99.8 1.2E-18 2.7E-23 170.7 20.1 212 123-376 7-230 (233)
78 PRK10865 protein disaggregatio 99.8 1.9E-19 4.1E-24 205.8 14.9 207 118-338 162-402 (857)
79 TIGR03346 chaperone_ClpB ATP-d 99.8 2.6E-19 5.6E-24 205.5 16.0 207 119-339 158-398 (852)
80 TIGR02880 cbbX_cfxQ probable R 99.8 4E-19 8.8E-24 179.0 14.2 186 135-339 23-255 (284)
81 TIGR00678 holB DNA polymerase 99.8 1.2E-18 2.7E-23 165.4 16.4 160 147-326 2-188 (188)
82 KOG0734 AAA+-type ATPase conta 99.8 8.5E-19 1.8E-23 180.2 16.0 234 122-397 292-564 (752)
83 PTZ00112 origin recognition co 99.8 1.5E-17 3.4E-22 181.4 25.8 290 124-468 748-1093(1164)
84 CHL00181 cbbX CbbX; Provisiona 99.8 7.9E-19 1.7E-23 176.8 14.8 187 134-339 23-256 (287)
85 PRK05642 DNA replication initi 99.8 4.6E-18 1E-22 166.7 19.0 212 123-375 7-233 (234)
86 COG0542 clpA ATP-binding subun 99.8 6.1E-19 1.3E-23 193.3 13.7 192 134-335 491-752 (786)
87 TIGR01241 FtsH_fam ATP-depende 99.8 3.1E-18 6.6E-23 186.2 19.1 210 129-382 50-300 (495)
88 PRK11034 clpA ATP-dependent Cl 99.8 2.5E-18 5.4E-23 192.5 18.5 226 121-377 173-433 (758)
89 PRK07399 DNA polymerase III su 99.8 2.6E-18 5.7E-23 174.9 17.0 182 132-333 2-225 (314)
90 PRK11034 clpA ATP-dependent Cl 99.8 9.5E-19 2.1E-23 195.9 13.4 257 68-336 389-714 (758)
91 COG2204 AtoC Response regulato 99.8 6.2E-18 1.3E-22 176.9 18.4 202 131-339 138-376 (464)
92 PRK12422 chromosomal replicati 99.8 1.5E-17 3.2E-22 177.0 21.1 267 132-438 109-405 (445)
93 PRK00149 dnaA chromosomal repl 99.8 1.3E-17 2.7E-22 179.4 20.8 265 132-437 120-409 (450)
94 COG3829 RocR Transcriptional r 99.8 1.2E-17 2.7E-22 174.2 19.2 204 129-339 240-481 (560)
95 CHL00095 clpC Clp protease ATP 99.8 2.8E-18 6.1E-23 196.4 15.0 203 121-338 166-402 (821)
96 KOG0733 Nuclear AAA ATPase (VC 99.8 4.8E-18 1E-22 177.3 14.9 178 132-333 188-406 (802)
97 PRK14088 dnaA chromosomal repl 99.8 1E-16 2.3E-21 170.9 25.4 210 132-377 103-332 (440)
98 KOG0733 Nuclear AAA ATPase (VC 99.8 1.1E-17 2.5E-22 174.5 17.3 232 131-392 508-784 (802)
99 CHL00176 ftsH cell division pr 99.8 1E-17 2.2E-22 184.6 17.4 206 131-377 180-423 (638)
100 COG1224 TIP49 DNA helicase TIP 99.8 3.1E-17 6.6E-22 162.0 18.8 128 217-375 291-430 (450)
101 PRK14087 dnaA chromosomal repl 99.8 5.7E-17 1.2E-21 173.1 22.6 270 130-438 111-409 (450)
102 PRK09087 hypothetical protein; 99.8 1.1E-17 2.4E-22 162.8 15.5 194 132-376 19-221 (226)
103 PRK14086 dnaA chromosomal repl 99.8 4.7E-17 1E-21 175.7 21.6 267 132-438 286-577 (617)
104 PRK05707 DNA polymerase III su 99.8 1.9E-16 4E-21 162.2 24.6 167 147-331 10-205 (328)
105 KOG0738 AAA+-type ATPase [Post 99.8 1.1E-17 2.3E-22 166.7 14.7 218 131-378 209-470 (491)
106 TIGR01817 nifA Nif-specific re 99.8 1.9E-17 4.2E-22 181.8 18.4 205 126-338 188-429 (534)
107 PRK03992 proteasome-activating 99.8 3E-17 6.5E-22 172.7 18.9 204 131-378 128-373 (389)
108 TIGR02639 ClpA ATP-dependent C 99.8 7.8E-18 1.7E-22 190.7 15.4 256 68-336 385-710 (731)
109 PRK08058 DNA polymerase III su 99.8 1.5E-17 3.2E-22 171.2 16.0 176 132-331 3-206 (329)
110 TIGR02974 phageshock_pspF psp 99.7 2.2E-17 4.7E-22 169.7 16.6 196 136-338 1-234 (329)
111 CHL00195 ycf46 Ycf46; Provisio 99.7 5.1E-17 1.1E-21 173.9 19.2 207 130-379 224-465 (489)
112 TIGR02329 propionate_PrpR prop 99.7 8.5E-17 1.8E-21 174.0 20.4 198 131-338 209-451 (526)
113 TIGR00362 DnaA chromosomal rep 99.7 7.9E-17 1.7E-21 171.1 20.0 212 132-377 108-337 (405)
114 PRK05022 anaerobic nitric oxid 99.7 1E-16 2.2E-21 174.7 20.9 201 132-339 185-422 (509)
115 PRK11388 DNA-binding transcrip 99.7 1E-16 2.2E-21 179.9 20.1 263 131-461 322-618 (638)
116 COG0542 clpA ATP-binding subun 99.7 1.6E-16 3.4E-21 174.6 20.9 207 118-339 154-395 (786)
117 PTZ00454 26S protease regulato 99.7 1.8E-16 3.9E-21 166.2 19.8 204 130-377 141-386 (398)
118 KOG0731 AAA+-type ATPase conta 99.7 6.1E-17 1.3E-21 176.4 16.5 208 130-377 307-553 (774)
119 PTZ00361 26 proteosome regulat 99.7 9.1E-17 2E-21 169.4 16.9 208 125-377 174-424 (438)
120 PRK11608 pspF phage shock prot 99.7 1.3E-16 2.9E-21 163.9 17.7 200 132-338 4-241 (326)
121 COG3604 FhlA Transcriptional r 99.7 5.1E-17 1.1E-21 167.3 14.2 199 132-337 221-456 (550)
122 PRK07993 DNA polymerase III su 99.7 3.9E-16 8.5E-21 160.2 20.9 167 147-332 12-207 (334)
123 PRK10820 DNA-binding transcrip 99.7 7.1E-16 1.5E-20 168.2 23.9 203 130-339 200-439 (520)
124 CHL00095 clpC Clp protease ATP 99.7 5.9E-17 1.3E-21 185.6 15.7 192 134-335 509-779 (821)
125 TIGR03345 VI_ClpV1 type VI sec 99.7 4.4E-17 9.5E-22 185.9 14.5 194 134-336 566-829 (852)
126 PRK15424 propionate catabolism 99.7 4E-16 8.8E-21 168.6 21.1 198 131-338 216-466 (538)
127 COG1221 PspF Transcriptional r 99.7 6.6E-17 1.4E-21 166.4 14.2 203 130-339 74-311 (403)
128 KOG0736 Peroxisome assembly fa 99.7 1.6E-16 3.6E-21 169.9 17.3 240 124-394 662-949 (953)
129 COG0593 DnaA ATPase involved i 99.7 5.5E-16 1.2E-20 160.1 20.4 240 158-438 113-373 (408)
130 PRK00411 cdc6 cell division co 99.7 4.7E-16 1E-20 164.9 20.1 221 122-377 21-282 (394)
131 PF06068 TIP49: TIP49 C-termin 99.7 3.6E-16 7.9E-21 157.1 17.1 106 218-334 279-396 (398)
132 COG0470 HolB ATPase involved i 99.7 7.1E-17 1.5E-21 166.4 12.5 175 134-336 1-206 (325)
133 TIGR01243 CDC48 AAA family ATP 99.7 2.9E-16 6.2E-21 178.5 18.4 226 130-383 449-716 (733)
134 PF00308 Bac_DnaA: Bacterial d 99.7 5.7E-16 1.2E-20 150.3 17.2 195 132-338 6-217 (219)
135 PF03215 Rad17: Rad17 cell cyc 99.7 2.4E-16 5.1E-21 169.7 16.0 210 119-336 4-270 (519)
136 TIGR00763 lon ATP-dependent pr 99.7 2.8E-16 6E-21 179.0 17.3 222 135-378 321-587 (775)
137 TIGR03346 chaperone_ClpB ATP-d 99.7 1.9E-16 4.1E-21 182.0 15.7 193 134-336 565-824 (852)
138 PRK06871 DNA polymerase III su 99.7 8.9E-16 1.9E-20 156.1 18.4 167 147-332 12-206 (325)
139 PRK10923 glnG nitrogen regulat 99.7 9.1E-16 2E-20 166.4 19.5 201 132-339 136-373 (469)
140 TIGR01242 26Sp45 26S proteasom 99.7 8.1E-16 1.7E-20 161.1 17.6 204 129-376 117-362 (364)
141 PRK08769 DNA polymerase III su 99.7 1.1E-15 2.3E-20 155.3 16.8 166 147-332 14-211 (319)
142 PRK15429 formate hydrogenlyase 99.7 4.2E-15 9.1E-20 167.9 22.8 202 131-339 373-611 (686)
143 TIGR03689 pup_AAA proteasome A 99.7 1.9E-15 4.2E-20 161.5 18.6 162 124-291 172-380 (512)
144 KOG0743 AAA+-type ATPase [Post 99.7 1.1E-16 2.4E-21 163.9 7.5 210 68-291 148-385 (457)
145 PRK15115 response regulator Gl 99.7 3.4E-15 7.3E-20 160.8 19.2 234 159-462 158-426 (444)
146 TIGR02915 PEP_resp_reg putativ 99.7 3.4E-15 7.3E-20 160.9 19.1 201 132-339 137-374 (445)
147 PF13177 DNA_pol3_delta2: DNA 99.7 8.5E-16 1.8E-20 142.0 12.1 134 138-277 1-162 (162)
148 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.1E-15 4.5E-20 175.4 17.9 181 158-378 1630-1878(2281)
149 TIGR01818 ntrC nitrogen regula 99.6 5.3E-15 1.2E-19 160.1 19.7 280 134-462 134-454 (463)
150 PRK11361 acetoacetate metaboli 99.6 1.1E-14 2.3E-19 157.5 21.2 267 133-462 142-445 (457)
151 PRK06090 DNA polymerase III su 99.6 9.3E-15 2E-19 148.3 18.1 163 147-331 13-203 (319)
152 PLN00020 ribulose bisphosphate 99.6 4.1E-15 8.9E-20 150.0 15.0 147 158-322 148-331 (413)
153 COG0465 HflB ATP-dependent Zn 99.6 2.5E-15 5.4E-20 161.3 13.5 209 130-379 146-392 (596)
154 PRK05342 clpX ATP-dependent pr 99.6 5.1E-15 1.1E-19 155.6 15.7 194 136-336 73-377 (412)
155 COG0464 SpoVK ATPases of the A 99.6 1E-14 2.2E-19 159.1 18.6 205 131-377 239-483 (494)
156 KOG1942 DNA helicase, TBP-inte 99.6 1.1E-14 2.3E-19 140.4 16.3 128 217-375 296-436 (456)
157 KOG1970 Checkpoint RAD17-RFC c 99.6 1E-14 2.3E-19 151.5 17.0 207 118-335 66-321 (634)
158 PRK10787 DNA-binding ATP-depen 99.6 8.4E-15 1.8E-19 165.5 17.2 220 135-380 323-585 (784)
159 PRK13407 bchI magnesium chelat 99.6 1.3E-14 2.8E-19 148.3 16.6 224 129-375 3-304 (334)
160 KOG0739 AAA+-type ATPase [Post 99.6 3E-15 6.6E-20 144.5 10.9 167 132-321 131-333 (439)
161 COG1474 CDC6 Cdc6-related prot 99.6 1.4E-14 2.9E-19 150.3 16.3 211 136-375 19-263 (366)
162 CHL00081 chlI Mg-protoporyphyr 99.6 1.9E-14 4.1E-19 147.3 16.9 229 124-376 6-321 (350)
163 KOG0740 AAA+-type ATPase [Post 99.6 1.2E-14 2.6E-19 150.2 15.4 229 125-386 144-413 (428)
164 KOG0737 AAA+-type ATPase [Post 99.6 6.9E-15 1.5E-19 146.8 13.0 181 132-336 90-310 (386)
165 KOG0727 26S proteasome regulat 99.6 2.3E-14 4.9E-19 135.5 15.7 203 132-377 153-396 (408)
166 KOG0728 26S proteasome regulat 99.6 2.9E-14 6.3E-19 134.6 15.9 210 124-377 137-388 (404)
167 PRK10365 transcriptional regul 99.6 5.2E-14 1.1E-18 151.5 20.1 237 158-462 162-433 (441)
168 PRK10733 hflB ATP-dependent me 99.6 2.1E-14 4.6E-19 160.1 17.5 209 128-377 146-392 (644)
169 COG0466 Lon ATP-dependent Lon 99.6 3.5E-14 7.6E-19 152.1 16.8 221 135-383 324-590 (782)
170 PRK06964 DNA polymerase III su 99.6 4.7E-14 1E-18 144.5 16.7 152 158-331 21-227 (342)
171 TIGR02640 gas_vesic_GvpN gas v 99.6 1.5E-13 3.2E-18 137.3 19.6 185 147-375 12-255 (262)
172 COG3283 TyrR Transcriptional r 99.6 1.2E-13 2.5E-18 136.7 18.1 201 132-339 202-434 (511)
173 PRK10865 protein disaggregatio 99.6 3.1E-14 6.7E-19 163.2 15.9 227 100-336 535-827 (857)
174 TIGR01243 CDC48 AAA family ATP 99.6 1.7E-13 3.7E-18 156.0 21.6 172 129-325 173-383 (733)
175 TIGR00390 hslU ATP-dependent p 99.6 1.3E-13 2.9E-18 142.2 18.1 145 217-377 247-430 (441)
176 TIGR00382 clpX endopeptidase C 99.6 7.9E-14 1.7E-18 145.9 16.4 194 135-337 78-384 (413)
177 PRK05201 hslU ATP-dependent pr 99.5 1.3E-13 2.8E-18 142.4 16.7 145 217-377 249-432 (443)
178 TIGR03015 pepcterm_ATPase puta 99.5 9E-13 1.9E-17 132.2 22.0 191 158-376 43-265 (269)
179 KOG0741 AAA+-type ATPase [Post 99.5 4.1E-14 8.9E-19 145.9 12.3 299 159-491 257-596 (744)
180 PF00004 AAA: ATPase family as 99.5 6.8E-14 1.5E-18 124.2 12.1 105 161-273 1-130 (132)
181 KOG0735 AAA+-type ATPase [Post 99.5 2E-13 4.4E-18 145.2 17.3 180 132-335 665-886 (952)
182 PRK13531 regulatory ATPase Rav 99.5 6E-13 1.3E-17 140.1 20.7 217 134-376 20-282 (498)
183 TIGR02030 BchI-ChlI magnesium 99.5 9.2E-14 2E-18 142.4 13.9 221 133-376 3-308 (337)
184 KOG0652 26S proteasome regulat 99.5 1E-13 2.2E-18 131.6 12.7 201 131-376 168-411 (424)
185 PRK05917 DNA polymerase III su 99.5 3.7E-13 7.9E-18 134.1 17.4 149 147-324 7-176 (290)
186 KOG0729 26S proteasome regulat 99.5 1.1E-13 2.4E-18 131.9 11.5 147 131-289 174-361 (435)
187 TIGR02442 Cob-chelat-sub cobal 99.5 3.8E-13 8.2E-18 149.9 17.8 218 133-375 3-302 (633)
188 KOG2680 DNA helicase TIP49, TB 99.5 7.8E-13 1.7E-17 128.0 16.7 128 217-375 288-427 (454)
189 PRK07132 DNA polymerase III su 99.5 1.1E-12 2.4E-17 132.2 18.3 164 147-330 6-185 (299)
190 KOG0726 26S proteasome regulat 99.5 9.9E-14 2.1E-18 133.7 10.1 204 125-376 176-425 (440)
191 KOG2004 Mitochondrial ATP-depe 99.5 4.2E-13 9.1E-18 143.1 14.4 194 134-338 411-646 (906)
192 KOG0742 AAA+-type ATPase [Post 99.5 1.9E-12 4.1E-17 130.1 18.0 190 133-333 354-588 (630)
193 PRK07276 DNA polymerase III su 99.5 1.3E-12 2.8E-17 130.7 16.2 166 138-330 6-198 (290)
194 PRK08699 DNA polymerase III su 99.5 8.1E-13 1.8E-17 135.3 14.5 129 156-287 18-183 (325)
195 PRK05818 DNA polymerase III su 99.4 1E-11 2.2E-16 121.2 19.9 155 157-333 6-194 (261)
196 KOG0732 AAA+-type ATPase conta 99.4 2.8E-12 6E-17 143.9 16.2 225 130-378 261-526 (1080)
197 PRK05574 holA DNA polymerase I 99.4 4.4E-10 9.5E-15 116.7 28.6 237 147-431 6-257 (340)
198 TIGR01128 holA DNA polymerase 99.4 1.5E-10 3.3E-15 118.1 24.7 259 185-494 18-283 (302)
199 COG1219 ClpX ATP-dependent pro 99.4 5.7E-12 1.2E-16 123.3 13.2 174 159-336 98-366 (408)
200 KOG0730 AAA+-type ATPase [Post 99.4 1.4E-11 3.1E-16 131.1 16.4 158 158-335 218-399 (693)
201 COG3284 AcoR Transcriptional a 99.4 1.4E-11 3.1E-16 131.4 15.8 173 159-339 337-542 (606)
202 TIGR01650 PD_CobS cobaltochela 99.4 4.3E-11 9.4E-16 120.9 18.6 137 147-289 55-233 (327)
203 KOG0651 26S proteasome regulat 99.3 3.7E-12 8E-17 124.2 9.9 170 131-321 129-339 (388)
204 TIGR02031 BchD-ChlD magnesium 99.3 2.8E-11 6E-16 133.6 18.1 200 155-376 13-257 (589)
205 TIGR00764 lon_rel lon-related 99.3 4.2E-11 9.1E-16 132.4 19.5 135 217-377 217-391 (608)
206 PRK05907 hypothetical protein; 99.3 1.8E-10 4E-15 117.1 22.6 231 147-431 8-248 (311)
207 PRK06585 holA DNA polymerase I 99.3 2.8E-10 6E-15 118.4 24.4 234 148-429 8-252 (343)
208 cd00009 AAA The AAA+ (ATPases 99.3 2.2E-11 4.7E-16 109.2 13.2 135 138-275 2-151 (151)
209 PF00158 Sigma54_activat: Sigm 99.3 4.5E-12 9.6E-17 117.6 8.7 134 136-272 1-166 (168)
210 PRK07452 DNA polymerase III su 99.3 2.7E-10 5.8E-15 117.7 22.1 225 159-429 2-240 (326)
211 KOG0744 AAA+-type ATPase [Post 99.3 3.8E-11 8.1E-16 117.8 14.3 133 159-292 178-343 (423)
212 TIGR00368 Mg chelatase-related 99.3 4.6E-11 1E-15 128.7 15.8 220 131-375 189-497 (499)
213 COG0714 MoxR-like ATPases [Gen 99.3 6.9E-11 1.5E-15 122.1 16.1 143 136-286 26-200 (329)
214 PRK05629 hypothetical protein; 99.3 2.9E-10 6.3E-15 117.0 20.2 220 159-428 7-233 (318)
215 PF05673 DUF815: Protein of un 99.3 1.5E-10 3.3E-15 111.4 16.7 189 127-333 20-245 (249)
216 PF01078 Mg_chelatase: Magnesi 99.3 2.8E-12 6E-17 120.9 4.6 110 132-246 1-135 (206)
217 PRK13765 ATP-dependent proteas 99.3 8.7E-11 1.9E-15 129.5 17.0 133 217-375 226-398 (637)
218 smart00350 MCM minichromosome 99.2 1.2E-10 2.7E-15 126.9 16.2 215 135-375 204-502 (509)
219 PF05621 TniB: Bacterial TniB 99.2 2E-10 4.4E-15 114.0 15.6 214 133-373 33-285 (302)
220 PRK07914 hypothetical protein; 99.2 3.3E-09 7E-14 109.3 24.8 219 159-427 6-234 (320)
221 PHA02244 ATPase-like protein 99.2 5.5E-10 1.2E-14 114.1 18.4 126 147-278 110-263 (383)
222 PF07724 AAA_2: AAA domain (Cd 99.2 1.4E-11 3.1E-16 114.5 6.1 86 159-245 4-107 (171)
223 KOG2227 Pre-initiation complex 99.2 1E-10 2.2E-15 120.3 12.6 256 135-407 151-450 (529)
224 KOG1968 Replication factor C, 99.2 3E-11 6.4E-16 136.2 9.6 200 121-337 307-539 (871)
225 PF01637 Arch_ATPase: Archaeal 99.2 1.1E-10 2.4E-15 113.8 12.5 174 136-328 1-233 (234)
226 PF07728 AAA_5: AAA domain (dy 99.2 1.5E-11 3.2E-16 110.7 5.5 105 160-268 1-139 (139)
227 KOG1051 Chaperone HSP104 and r 99.2 5.7E-11 1.2E-15 132.9 10.7 205 124-338 176-411 (898)
228 COG1220 HslU ATP-dependent pro 99.2 3.7E-10 7.9E-15 111.6 14.8 144 217-376 250-432 (444)
229 KOG1514 Origin recognition com 99.2 1.3E-09 2.8E-14 117.0 20.1 193 159-376 423-654 (767)
230 KOG0745 Putative ATP-dependent 99.2 4.6E-10 1E-14 114.1 15.6 176 159-339 227-510 (564)
231 PRK08487 DNA polymerase III su 99.2 3.1E-09 6.8E-14 109.7 22.1 231 147-430 4-241 (328)
232 PF07726 AAA_3: ATPase family 99.2 7.2E-11 1.6E-15 102.4 8.2 107 160-269 1-130 (131)
233 COG0606 Predicted ATPase with 99.1 4.6E-11 9.9E-16 123.9 6.6 192 130-330 175-444 (490)
234 PRK06581 DNA polymerase III su 99.1 4.4E-09 9.6E-14 100.6 18.1 172 147-335 3-193 (263)
235 COG1239 ChlI Mg-chelatase subu 99.1 2E-09 4.4E-14 110.3 16.0 220 132-376 15-321 (423)
236 PRK11331 5-methylcytosine-spec 99.1 8E-10 1.7E-14 115.8 13.0 145 133-285 174-368 (459)
237 PF14532 Sigma54_activ_2: Sigm 99.1 1.7E-10 3.7E-15 103.8 6.2 124 138-276 2-138 (138)
238 PRK09862 putative ATP-dependen 99.1 1.8E-09 4E-14 115.9 15.0 222 131-377 188-492 (506)
239 PTZ00111 DNA replication licen 99.1 2.5E-09 5.4E-14 120.1 16.5 126 160-289 494-657 (915)
240 KOG0735 AAA+-type ATPase [Post 99.1 5.3E-09 1.1E-13 112.1 18.0 166 159-338 432-625 (952)
241 KOG1051 Chaperone HSP104 and r 99.0 4E-09 8.6E-14 118.3 15.3 193 134-336 562-832 (898)
242 smart00763 AAA_PrkA PrkA AAA d 99.0 3.8E-09 8.2E-14 108.0 12.2 92 217-318 236-348 (361)
243 COG1466 HolA DNA polymerase II 99.0 3.1E-07 6.7E-12 95.1 25.8 263 149-468 6-286 (334)
244 PRK13406 bchD magnesium chelat 98.9 1.8E-08 3.8E-13 110.6 16.1 191 157-376 24-249 (584)
245 PF13173 AAA_14: AAA domain 98.9 5.7E-09 1.2E-13 92.6 9.8 120 159-281 3-127 (128)
246 PRK08485 DNA polymerase III su 98.9 7.3E-09 1.6E-13 96.5 10.6 129 192-338 33-176 (206)
247 PRK12377 putative replication 98.9 2.9E-09 6.3E-14 104.8 8.4 94 158-252 101-203 (248)
248 COG2607 Predicted ATPase (AAA+ 98.9 6.2E-08 1.3E-12 92.0 16.0 187 127-334 53-278 (287)
249 COG3267 ExeA Type II secretory 98.9 7.8E-08 1.7E-12 92.5 16.6 184 147-339 41-255 (269)
250 smart00382 AAA ATPases associa 98.8 3.1E-08 6.8E-13 87.6 11.9 90 159-253 3-124 (148)
251 COG4650 RtcR Sigma54-dependent 98.8 8E-08 1.7E-12 93.4 14.3 190 159-376 209-442 (531)
252 KOG0741 AAA+-type ATPase [Post 98.8 3.2E-08 7E-13 103.0 12.1 155 158-335 538-721 (744)
253 PRK08116 hypothetical protein; 98.8 2.4E-08 5.2E-13 99.9 10.4 118 159-277 115-250 (268)
254 PRK07952 DNA replication prote 98.7 4.1E-08 8.8E-13 96.4 9.1 124 125-252 63-202 (244)
255 KOG0482 DNA replication licens 98.7 3.4E-07 7.4E-12 95.0 15.3 214 124-376 332-637 (721)
256 KOG0736 Peroxisome assembly fa 98.7 4.2E-07 9E-12 98.8 15.7 124 159-291 432-578 (953)
257 PF13401 AAA_22: AAA domain; P 98.7 1.3E-07 2.9E-12 83.7 9.8 95 159-254 5-125 (131)
258 PRK06921 hypothetical protein; 98.7 7.5E-08 1.6E-12 96.2 9.1 85 158-243 117-210 (266)
259 COG1618 Predicted nucleotide k 98.6 4.1E-07 8.8E-12 81.5 11.7 128 159-291 6-174 (179)
260 PHA00729 NTP-binding motif con 98.6 2.3E-07 4.9E-12 89.3 9.9 119 149-287 8-138 (226)
261 PF12775 AAA_7: P-loop contain 98.6 1.2E-07 2.7E-12 94.9 8.2 142 148-291 25-195 (272)
262 PRK08181 transposase; Validate 98.5 2.7E-07 5.8E-12 92.0 9.3 99 151-252 101-206 (269)
263 PF00931 NB-ARC: NB-ARC domain 98.5 2.1E-06 4.4E-11 86.9 15.9 172 147-333 6-206 (287)
264 COG1241 MCM2 Predicted ATPase 98.5 3.6E-07 7.8E-12 100.6 9.6 192 159-376 320-591 (682)
265 KOG0478 DNA replication licens 98.5 1.1E-06 2.5E-11 94.3 12.3 116 159-279 463-616 (804)
266 PRK06835 DNA replication prote 98.5 3.9E-07 8.5E-12 93.5 8.4 109 159-268 184-305 (329)
267 PF12774 AAA_6: Hydrolytic ATP 98.5 8.7E-06 1.9E-10 79.4 17.2 120 159-286 33-177 (231)
268 PRK06526 transposase; Provisio 98.5 4.5E-07 9.7E-12 89.9 8.3 84 159-243 99-187 (254)
269 KOG2170 ATPase of the AAA+ sup 98.4 3.2E-06 7E-11 83.1 13.6 169 136-318 84-318 (344)
270 COG1484 DnaC DNA replication p 98.4 1.1E-06 2.4E-11 87.2 9.5 86 157-243 104-195 (254)
271 PF00493 MCM: MCM2/3/5 family 98.4 7.6E-08 1.7E-12 99.3 1.0 190 159-375 58-324 (331)
272 KOG0480 DNA replication licens 98.4 3.7E-06 7.9E-11 89.9 13.0 190 159-376 379-642 (764)
273 PF05729 NACHT: NACHT domain 98.4 2.8E-06 6.1E-11 78.0 10.6 130 160-290 2-164 (166)
274 PF01695 IstB_IS21: IstB-like 98.4 5.9E-07 1.3E-11 84.3 5.9 88 158-252 47-147 (178)
275 COG5271 MDN1 AAA ATPase contai 98.4 1.8E-06 3.9E-11 99.5 10.4 136 148-290 1535-1704(4600)
276 PRK04841 transcriptional regul 98.3 2.3E-05 4.9E-10 92.2 18.8 159 157-331 31-227 (903)
277 PF06144 DNA_pol3_delta: DNA p 98.3 3E-06 6.5E-11 78.9 8.7 163 161-335 1-172 (172)
278 PF14516 AAA_35: AAA-like doma 98.3 0.00025 5.4E-09 73.4 23.5 170 147-335 21-245 (331)
279 PRK08939 primosomal protein Dn 98.3 2.1E-06 4.6E-11 87.4 8.0 94 158-252 156-258 (306)
280 PRK09183 transposase/IS protei 98.3 1.8E-06 3.8E-11 86.1 7.2 84 159-243 103-192 (259)
281 PF07693 KAP_NTPase: KAP famil 98.2 8.8E-05 1.9E-09 76.4 19.6 121 215-337 170-322 (325)
282 TIGR02688 conserved hypothetic 98.2 1.7E-05 3.6E-10 82.7 13.9 83 151-245 204-292 (449)
283 PF13191 AAA_16: AAA ATPase do 98.2 1.3E-06 2.7E-11 82.1 3.9 59 135-196 1-63 (185)
284 PF03266 NTPase_1: NTPase; In 98.1 2.1E-06 4.7E-11 79.6 4.7 64 217-281 95-163 (168)
285 KOG0477 DNA replication licens 98.1 1.9E-05 4.2E-10 84.1 11.8 129 135-270 450-625 (854)
286 PF13604 AAA_30: AAA domain; P 98.1 2E-05 4.3E-10 75.2 9.8 104 148-252 9-130 (196)
287 COG1373 Predicted ATPase (AAA+ 98.1 4.1E-05 8.8E-10 81.1 13.0 132 147-284 27-162 (398)
288 PF00627 UBA: UBA/TS-N domain; 98.1 5.6E-06 1.2E-10 56.2 4.2 32 3-35 6-37 (37)
289 COG3899 Predicted ATPase [Gene 98.1 0.00033 7E-09 81.1 21.1 106 216-336 153-267 (849)
290 PRK04296 thymidine kinase; Pro 98.0 3.5E-05 7.6E-10 73.2 10.9 88 160-250 4-111 (190)
291 smart00165 UBA Ubiquitin assoc 98.0 6.9E-06 1.5E-10 55.8 4.2 34 2-36 4-37 (37)
292 KOG2228 Origin recognition com 98.0 1.9E-05 4.2E-10 78.8 8.7 142 148-290 39-220 (408)
293 cd00194 UBA Ubiquitin Associat 98.0 8.7E-06 1.9E-10 55.6 4.5 35 2-37 4-38 (38)
294 PF12780 AAA_8: P-loop contain 98.0 8.7E-05 1.9E-09 74.1 12.2 141 147-291 21-212 (268)
295 PRK04132 replication factor C 97.9 3.4E-06 7.4E-11 95.7 2.1 51 120-173 5-55 (846)
296 COG5271 MDN1 AAA ATPase contai 97.9 8.2E-05 1.8E-09 86.6 12.1 124 158-290 888-1048(4600)
297 cd01120 RecA-like_NTPases RecA 97.9 7.1E-05 1.5E-09 68.2 9.1 23 161-183 2-24 (165)
298 PLN03210 Resistant to P. syrin 97.8 0.00029 6.3E-09 84.8 16.1 173 130-328 180-394 (1153)
299 PRK10536 hypothetical protein; 97.8 0.00015 3.4E-09 71.1 11.2 105 147-253 65-213 (262)
300 KOG2543 Origin recognition com 97.8 0.0003 6.5E-09 71.6 13.1 182 135-337 7-234 (438)
301 PF00910 RNA_helicase: RNA hel 97.8 2.9E-05 6.3E-10 66.4 5.0 72 161-246 1-82 (107)
302 PHA02624 large T antigen; Prov 97.8 0.00011 2.4E-09 79.7 10.0 102 159-275 432-561 (647)
303 PHA02774 E1; Provisional 97.7 0.00018 3.9E-09 77.8 11.0 113 147-274 422-553 (613)
304 PF10236 DAP3: Mitochondrial r 97.7 0.001 2.2E-08 68.0 15.6 51 270-328 258-308 (309)
305 PF04665 Pox_A32: Poxvirus A32 97.7 0.00087 1.9E-08 65.4 14.0 126 159-287 14-168 (241)
306 PRK13695 putative NTPase; Prov 97.7 0.00024 5.2E-09 66.3 9.8 72 216-288 95-171 (174)
307 PF03969 AFG1_ATPase: AFG1-lik 97.7 0.00011 2.3E-09 76.6 8.1 114 157-276 61-201 (362)
308 COG3854 SpoIIIAA ncharacterize 97.6 0.00067 1.4E-08 64.6 11.3 101 144-252 123-250 (308)
309 cd01128 rho_factor Transcripti 97.6 0.00025 5.5E-09 70.0 8.9 76 157-233 15-119 (249)
310 cd01131 PilT Pilus retraction 97.6 0.00041 9E-09 66.3 10.1 83 159-248 2-103 (198)
311 PF09848 DUF2075: Uncharacteri 97.6 0.00022 4.8E-09 74.5 8.6 90 160-251 3-125 (352)
312 PF13207 AAA_17: AAA domain; P 97.6 7.2E-05 1.6E-09 65.1 4.2 31 161-193 2-32 (121)
313 PRK09376 rho transcription ter 97.6 0.00025 5.3E-09 73.6 8.4 76 158-234 169-273 (416)
314 TIGR02858 spore_III_AA stage I 97.5 0.00071 1.5E-08 67.7 11.4 37 147-183 100-136 (270)
315 PF04851 ResIII: Type III rest 97.5 0.00036 7.8E-09 65.0 8.8 43 138-183 7-50 (184)
316 COG4088 Predicted nucleotide k 97.5 0.00087 1.9E-08 62.8 10.9 25 159-183 2-26 (261)
317 PTZ00202 tuzin; Provisional 97.5 0.003 6.5E-08 66.3 15.6 61 129-194 257-320 (550)
318 PF06309 Torsin: Torsin; Inte 97.5 0.00034 7.4E-09 60.9 7.3 47 134-183 25-78 (127)
319 COG2909 MalT ATP-dependent tra 97.5 0.0028 6E-08 70.8 15.9 162 147-323 25-227 (894)
320 PF00437 T2SE: Type II/IV secr 97.4 0.00046 9.9E-09 69.3 8.6 141 132-288 102-260 (270)
321 cd00046 DEXDc DEAD-like helica 97.4 0.0005 1.1E-08 60.3 7.9 25 159-183 1-25 (144)
322 PRK08118 topology modulation p 97.4 0.0029 6.2E-08 58.7 12.8 32 160-193 3-34 (167)
323 TIGR00767 rho transcription te 97.4 0.0005 1.1E-08 71.6 8.4 77 158-235 168-273 (415)
324 KOG3347 Predicted nucleotide k 97.4 0.00013 2.8E-09 64.7 3.3 34 158-193 7-40 (176)
325 PRK15455 PrkA family serine pr 97.4 0.00012 2.7E-09 79.0 3.8 52 129-183 71-128 (644)
326 TIGR01448 recD_rel helicase, p 97.4 0.0004 8.6E-09 79.1 8.0 98 159-256 339-456 (720)
327 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00059 1.3E-08 69.7 8.1 47 134-183 61-113 (358)
328 TIGR02768 TraA_Ti Ti-type conj 97.4 0.00049 1.1E-08 78.6 8.4 94 159-252 369-476 (744)
329 TIGR01618 phage_P_loop phage n 97.3 0.00021 4.5E-09 69.1 4.5 66 159-231 13-95 (220)
330 cd01124 KaiC KaiC is a circadi 97.3 0.001 2.2E-08 62.6 9.0 23 160-182 1-23 (187)
331 PF00448 SRP54: SRP54-type pro 97.3 0.00077 1.7E-08 64.2 8.1 25 159-183 2-26 (196)
332 PF01443 Viral_helicase1: Vira 97.3 0.00023 5.1E-09 69.5 4.5 91 161-252 1-97 (234)
333 PRK13889 conjugal transfer rel 97.3 0.0011 2.4E-08 77.0 9.9 95 160-254 364-472 (988)
334 PF05272 VirE: Virulence-assoc 97.2 0.0016 3.4E-08 62.1 9.2 100 159-275 53-169 (198)
335 TIGR02788 VirB11 P-type DNA tr 97.2 0.0019 4.2E-08 66.1 10.4 86 159-252 145-250 (308)
336 TIGR01420 pilT_fam pilus retra 97.2 0.0024 5.2E-08 66.4 11.1 92 147-246 112-222 (343)
337 PF13245 AAA_19: Part of AAA d 97.2 0.001 2.2E-08 53.1 6.3 45 159-203 11-60 (76)
338 PF10443 RNA12: RNA12 protein; 97.2 0.0066 1.4E-07 63.6 14.0 183 147-334 6-283 (431)
339 smart00487 DEXDc DEAD-like hel 97.2 0.00074 1.6E-08 63.1 6.6 25 159-183 25-50 (201)
340 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0025 5.4E-08 63.7 10.5 93 147-247 70-177 (264)
341 PRK13851 type IV secretion sys 97.2 0.0021 4.5E-08 66.5 10.0 84 159-250 163-266 (344)
342 KOG3928 Mitochondrial ribosome 97.2 0.012 2.7E-07 60.7 15.1 54 267-328 402-455 (461)
343 PRK13900 type IV secretion sys 97.2 0.0019 4.2E-08 66.6 9.5 84 159-250 161-265 (332)
344 PRK14737 gmk guanylate kinase; 97.1 0.0014 3.1E-08 61.9 7.8 116 158-286 4-135 (186)
345 PRK13949 shikimate kinase; Pro 97.1 0.0017 3.7E-08 60.4 8.0 33 159-193 2-34 (169)
346 PRK06547 hypothetical protein; 97.1 0.0028 6.1E-08 59.0 9.3 39 152-192 9-47 (172)
347 PRK05800 cobU adenosylcobinami 97.1 0.0021 4.6E-08 59.7 8.4 35 160-196 3-37 (170)
348 PRK03839 putative kinase; Prov 97.1 0.00043 9.3E-09 65.0 3.8 31 160-192 2-32 (180)
349 COG0703 AroK Shikimate kinase 97.1 0.00083 1.8E-08 61.9 5.5 33 159-193 3-35 (172)
350 PRK00131 aroK shikimate kinase 97.1 0.00052 1.1E-08 63.6 4.3 32 159-192 5-36 (175)
351 PRK12723 flagellar biosynthesi 97.1 0.0045 9.7E-08 65.1 11.6 85 158-242 174-281 (388)
352 TIGR01447 recD exodeoxyribonuc 97.1 0.0015 3.3E-08 72.3 8.5 35 218-252 260-295 (586)
353 cd03283 ABC_MutS-like MutS-lik 97.1 0.0027 5.8E-08 60.7 9.1 24 159-182 26-49 (199)
354 COG1067 LonB Predicted ATP-dep 97.1 0.00082 1.8E-08 74.6 6.2 224 125-377 95-399 (647)
355 PRK10875 recD exonuclease V su 97.1 0.0021 4.6E-08 71.5 9.5 94 159-252 168-301 (615)
356 cd01121 Sms Sms (bacterial rad 97.1 0.0018 4E-08 67.8 8.5 47 147-193 69-118 (372)
357 KOG0479 DNA replication licens 97.1 0.0019 4.2E-08 68.8 8.6 148 136-290 303-499 (818)
358 PF05970 PIF1: PIF1-like helic 97.1 0.00076 1.6E-08 70.8 5.7 95 147-241 11-126 (364)
359 PRK13947 shikimate kinase; Pro 97.1 0.00056 1.2E-08 63.5 4.1 33 159-193 2-34 (171)
360 PRK00625 shikimate kinase; Pro 97.1 0.00053 1.1E-08 64.0 3.9 32 160-193 2-33 (173)
361 PF13671 AAA_33: AAA domain; P 97.1 0.00055 1.2E-08 61.3 4.0 29 161-191 2-30 (143)
362 PRK14974 cell division protein 97.1 0.0037 8E-08 64.5 10.4 27 157-183 139-165 (336)
363 cd01130 VirB11-like_ATPase Typ 97.1 0.0026 5.6E-08 60.1 8.7 90 147-246 16-126 (186)
364 PF10923 DUF2791: P-loop Domai 97.0 0.0096 2.1E-07 62.8 13.4 97 217-318 239-370 (416)
365 COG4619 ABC-type uncharacteriz 97.0 0.0044 9.6E-08 56.4 9.2 25 159-183 30-54 (223)
366 PRK13948 shikimate kinase; Pro 97.0 0.0081 1.8E-07 56.5 11.5 34 158-193 10-43 (182)
367 KOG1808 AAA ATPase containing 97.0 0.001 2.2E-08 80.4 6.4 136 148-289 431-599 (1856)
368 cd02027 APSK Adenosine 5'-phos 97.0 0.0067 1.4E-07 55.1 10.5 22 161-182 2-23 (149)
369 cd03216 ABC_Carb_Monos_I This 97.0 0.0044 9.5E-08 57.2 9.2 81 159-242 27-126 (163)
370 PRK13826 Dtr system oriT relax 97.0 0.0019 4.1E-08 75.6 8.2 95 159-253 398-506 (1102)
371 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0063 1.4E-07 54.9 10.0 90 159-252 27-124 (144)
372 COG5207 UBP14 Isopeptidase T [ 97.0 0.0014 3E-08 68.3 6.2 39 3-41 562-600 (749)
373 cd00464 SK Shikimate kinase (S 96.9 0.00077 1.7E-08 61.2 3.9 31 160-192 1-31 (154)
374 PRK11823 DNA repair protein Ra 96.9 0.0036 7.9E-08 67.3 9.6 48 147-194 67-117 (446)
375 PRK14722 flhF flagellar biosyn 96.9 0.0042 9.1E-08 64.8 9.6 24 159-182 138-161 (374)
376 PF13479 AAA_24: AAA domain 96.9 0.0016 3.4E-08 63.0 6.0 64 159-230 4-81 (213)
377 PRK13894 conjugal transfer ATP 96.9 0.0079 1.7E-07 61.7 11.4 94 147-250 139-249 (319)
378 TIGR02237 recomb_radB DNA repa 96.9 0.0074 1.6E-07 58.0 10.6 37 159-195 13-50 (209)
379 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0067 1.5E-07 58.6 10.3 22 159-180 30-51 (213)
380 PRK12608 transcription termina 96.9 0.0034 7.4E-08 65.0 8.6 28 156-183 131-158 (380)
381 PF02562 PhoH: PhoH-like prote 96.9 0.0015 3.2E-08 62.4 5.6 37 217-253 119-156 (205)
382 COG0529 CysC Adenylylsulfate k 96.9 0.015 3.3E-07 53.4 11.7 46 147-192 12-58 (197)
383 COG1126 GlnQ ABC-type polar am 96.9 0.003 6.5E-08 59.9 7.4 38 217-254 154-195 (240)
384 PRK07261 topology modulation p 96.9 0.00086 1.9E-08 62.5 3.8 32 160-193 2-33 (171)
385 PRK14532 adenylate kinase; Pro 96.9 0.00088 1.9E-08 63.3 4.0 30 160-191 2-31 (188)
386 COG0464 SpoVK ATPases of the A 96.9 0.037 8E-07 60.6 17.2 189 153-377 13-226 (494)
387 KOG0481 DNA replication licens 96.9 0.0061 1.3E-07 64.3 10.2 104 135-245 332-456 (729)
388 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0067 1.4E-07 56.8 9.7 81 159-242 26-115 (177)
389 cd02020 CMPK Cytidine monophos 96.8 0.0024 5.2E-08 57.3 6.3 30 161-192 2-31 (147)
390 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.00099 2.1E-08 62.5 3.8 29 161-191 2-30 (183)
391 COG1102 Cmk Cytidylate kinase 96.8 0.00098 2.1E-08 60.2 3.4 28 161-190 3-30 (179)
392 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0086 1.9E-07 54.7 9.9 81 159-243 26-125 (157)
393 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.6E-08 63.9 4.3 31 159-191 4-34 (215)
394 COG1936 Predicted nucleotide k 96.8 0.00084 1.8E-08 61.4 2.9 30 160-192 2-31 (180)
395 PRK11889 flhF flagellar biosyn 96.8 0.0092 2E-07 62.2 10.8 25 159-183 242-266 (436)
396 PRK13833 conjugal transfer pro 96.8 0.0077 1.7E-07 61.7 10.1 94 147-250 135-245 (323)
397 PRK08533 flagellar accessory p 96.8 0.011 2.4E-07 57.9 10.9 34 159-192 25-59 (230)
398 TIGR01613 primase_Cterm phage/ 96.8 0.0076 1.6E-07 61.6 10.2 108 159-274 77-202 (304)
399 PRK04040 adenylate kinase; Pro 96.8 0.0026 5.7E-08 60.2 6.2 33 159-191 3-35 (188)
400 cd02021 GntK Gluconate kinase 96.8 0.0013 2.7E-08 59.7 3.9 29 161-191 2-30 (150)
401 TIGR02782 TrbB_P P-type conjug 96.8 0.004 8.6E-08 63.4 7.8 90 147-246 123-230 (299)
402 PRK06217 hypothetical protein; 96.8 0.0013 2.7E-08 62.1 3.9 32 160-193 3-34 (183)
403 COG1116 TauB ABC-type nitrate/ 96.7 0.0081 1.7E-07 58.4 9.2 25 159-183 30-54 (248)
404 TIGR00174 miaA tRNA isopenteny 96.7 0.018 3.9E-07 58.0 12.0 31 161-193 2-32 (287)
405 COG4178 ABC-type uncharacteriz 96.7 0.0055 1.2E-07 67.1 8.8 38 216-253 532-572 (604)
406 cd00544 CobU Adenosylcobinamid 96.7 0.013 2.7E-07 54.5 10.1 32 161-194 2-33 (169)
407 PRK14531 adenylate kinase; Pro 96.7 0.0015 3.4E-08 61.4 4.0 31 159-191 3-33 (183)
408 PRK13808 adenylate kinase; Pro 96.7 0.06 1.3E-06 55.3 15.7 30 160-191 2-31 (333)
409 PF13238 AAA_18: AAA domain; P 96.7 0.0013 2.7E-08 57.6 3.1 22 161-182 1-22 (129)
410 COG2842 Uncharacterized ATPase 96.7 0.041 8.9E-07 54.8 13.8 161 159-339 95-281 (297)
411 PTZ00293 thymidine kinase; Pro 96.7 0.0075 1.6E-07 57.7 8.5 81 160-249 6-108 (211)
412 TIGR01313 therm_gnt_kin carboh 96.7 0.0014 3.1E-08 60.3 3.4 29 161-191 1-29 (163)
413 cd01428 ADK Adenylate kinase ( 96.7 0.0016 3.4E-08 61.7 3.8 30 161-192 2-31 (194)
414 TIGR03574 selen_PSTK L-seryl-t 96.7 0.011 2.3E-07 58.6 9.9 23 161-183 2-24 (249)
415 PRK06067 flagellar accessory p 96.7 0.026 5.6E-07 55.3 12.5 23 159-181 26-48 (234)
416 TIGR02525 plasmid_TraJ plasmid 96.7 0.0069 1.5E-07 63.3 8.7 83 158-247 149-253 (372)
417 COG3842 PotA ABC-type spermidi 96.6 0.0046 1E-07 63.7 7.3 23 161-183 34-56 (352)
418 PF13086 AAA_11: AAA domain; P 96.6 0.003 6.6E-08 61.1 5.8 23 160-182 19-41 (236)
419 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0021 4.6E-08 60.4 4.5 32 158-191 3-34 (188)
420 PHA02530 pseT polynucleotide k 96.6 0.016 3.5E-07 58.9 11.3 23 160-182 4-26 (300)
421 PRK00091 miaA tRNA delta(2)-is 96.6 0.0088 1.9E-07 61.0 9.1 33 159-193 5-37 (307)
422 smart00072 GuKc Guanylate kina 96.6 0.013 2.8E-07 55.2 9.5 118 159-287 3-134 (184)
423 PTZ00088 adenylate kinase 1; P 96.6 0.0019 4.1E-08 63.1 3.8 33 159-193 7-39 (229)
424 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.018 4E-07 52.6 9.9 104 159-268 3-146 (159)
425 COG1124 DppF ABC-type dipeptid 96.6 0.011 2.3E-07 57.2 8.5 25 159-183 34-58 (252)
426 PRK09361 radB DNA repair and r 96.6 0.017 3.6E-07 56.2 10.3 36 159-194 24-60 (225)
427 PRK13764 ATPase; Provisional 96.6 0.0068 1.5E-07 67.0 8.2 25 159-183 258-282 (602)
428 cd00227 CPT Chloramphenicol (C 96.5 0.0018 4E-08 60.4 3.3 25 159-183 3-27 (175)
429 PF08433 KTI12: Chromatin asso 96.5 0.005 1.1E-07 61.6 6.6 82 159-243 2-95 (270)
430 cd03243 ABC_MutS_homologs The 96.5 0.013 2.8E-07 56.1 9.2 22 159-180 30-51 (202)
431 PRK00771 signal recognition pa 96.5 0.013 2.9E-07 62.5 10.1 26 158-183 95-120 (437)
432 PF05707 Zot: Zonular occluden 96.5 0.0022 4.9E-08 60.9 3.9 50 217-268 79-137 (193)
433 PRK06762 hypothetical protein; 96.5 0.0027 5.9E-08 58.6 4.2 25 159-183 3-27 (166)
434 cd02019 NK Nucleoside/nucleoti 96.5 0.0023 5.1E-08 49.9 3.2 22 161-182 2-23 (69)
435 PRK14528 adenylate kinase; Pro 96.5 0.0024 5.2E-08 60.4 3.9 31 159-191 2-32 (186)
436 cd03115 SRP The signal recogni 96.5 0.043 9.3E-07 50.9 12.3 35 160-194 2-37 (173)
437 COG0563 Adk Adenylate kinase a 96.5 0.0024 5.3E-08 59.8 3.8 24 160-183 2-25 (178)
438 PRK03731 aroL shikimate kinase 96.5 0.0028 6.1E-08 58.8 4.2 32 159-192 3-34 (171)
439 PRK05703 flhF flagellar biosyn 96.5 0.027 5.9E-07 60.2 12.1 84 159-242 222-326 (424)
440 TIGR03819 heli_sec_ATPase heli 96.5 0.02 4.4E-07 59.3 10.7 118 159-288 179-318 (340)
441 PRK05057 aroK shikimate kinase 96.5 0.0028 6E-08 59.1 4.0 33 159-193 5-37 (172)
442 PRK02496 adk adenylate kinase; 96.5 0.0024 5.2E-08 60.1 3.6 30 160-191 3-32 (184)
443 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.015 3.2E-07 55.8 9.1 23 159-181 30-52 (204)
444 KOG0944 Ubiquitin-specific pro 96.4 0.003 6.5E-08 68.2 4.5 39 3-41 575-613 (763)
445 cd03223 ABCD_peroxisomal_ALDP 96.4 0.019 4.2E-07 53.1 9.4 91 159-252 28-145 (166)
446 PRK03846 adenylylsulfate kinas 96.4 0.029 6.2E-07 53.5 10.9 27 157-183 23-49 (198)
447 cd03246 ABCC_Protease_Secretio 96.4 0.022 4.7E-07 53.0 9.8 25 159-183 29-53 (173)
448 cd03228 ABCC_MRP_Like The MRP 96.4 0.023 5E-07 52.7 9.7 25 159-183 29-53 (171)
449 COG2804 PulE Type II secretory 96.4 0.012 2.6E-07 62.7 8.5 99 147-249 248-357 (500)
450 TIGR02533 type_II_gspE general 96.4 0.022 4.8E-07 61.9 10.8 94 147-248 232-340 (486)
451 PRK13946 shikimate kinase; Pro 96.4 0.0029 6.2E-08 59.7 3.5 32 159-192 11-42 (184)
452 cd03247 ABCC_cytochrome_bd The 96.4 0.021 4.4E-07 53.5 9.3 25 159-183 29-53 (178)
453 TIGR01351 adk adenylate kinase 96.4 0.003 6.4E-08 60.9 3.6 29 161-191 2-30 (210)
454 PRK14738 gmk guanylate kinase; 96.4 0.015 3.2E-07 56.0 8.4 23 159-181 14-36 (206)
455 COG5245 DYN1 Dynein, heavy cha 96.3 0.01 2.2E-07 69.6 8.1 130 157-291 1493-1660(3164)
456 PRK14021 bifunctional shikimat 96.3 0.026 5.7E-07 62.4 11.3 34 158-193 6-39 (542)
457 CHL00195 ycf46 Ycf46; Provisio 96.3 0.68 1.5E-05 50.4 21.9 102 218-334 82-190 (489)
458 COG2884 FtsE Predicted ATPase 96.3 0.034 7.4E-07 51.8 10.1 24 160-183 30-53 (223)
459 PRK00279 adk adenylate kinase; 96.3 0.0034 7.3E-08 60.7 3.7 30 160-191 2-31 (215)
460 COG1419 FlhF Flagellar GTP-bin 96.3 0.013 2.8E-07 61.0 8.0 40 158-197 203-247 (407)
461 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.029 6.4E-07 54.5 10.2 22 159-180 32-53 (222)
462 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.012 2.7E-07 61.3 8.0 92 148-247 125-240 (358)
463 TIGR00416 sms DNA repair prote 96.3 0.021 4.5E-07 61.6 9.9 47 147-193 81-130 (454)
464 PF00519 PPV_E1_C: Papillomavi 96.3 0.017 3.6E-07 59.7 8.5 115 147-275 250-382 (432)
465 PLN02200 adenylate kinase fami 96.3 0.004 8.7E-08 61.1 4.1 31 159-191 44-74 (234)
466 PRK14712 conjugal transfer nic 96.3 0.022 4.7E-07 69.2 10.9 109 147-256 842-971 (1623)
467 COG1485 Predicted ATPase [Gene 96.3 0.022 4.8E-07 58.0 9.2 26 158-183 65-90 (367)
468 COG1066 Sms Predicted ATP-depe 96.3 0.018 3.9E-07 59.7 8.7 79 147-230 80-181 (456)
469 COG1125 OpuBA ABC-type proline 96.3 0.031 6.7E-07 54.5 9.7 33 160-192 29-61 (309)
470 KOG2383 Predicted ATPase [Gene 96.2 0.013 2.8E-07 60.4 7.5 26 158-183 114-139 (467)
471 COG0194 Gmk Guanylate kinase [ 96.2 0.025 5.4E-07 52.6 8.8 25 159-183 5-29 (191)
472 TIGR00150 HI0065_YjeE ATPase, 96.2 0.005 1.1E-07 54.6 4.0 25 159-183 23-47 (133)
473 COG4608 AppF ABC-type oligopep 96.2 0.021 4.6E-07 56.2 8.7 94 159-252 40-167 (268)
474 PF01583 APS_kinase: Adenylyls 96.2 0.016 3.5E-07 52.8 7.4 34 159-192 3-37 (156)
475 PLN02840 tRNA dimethylallyltra 96.2 0.042 9E-07 58.1 11.5 32 159-192 22-53 (421)
476 TIGR00643 recG ATP-dependent D 96.2 0.018 4E-07 64.9 9.4 36 217-252 357-395 (630)
477 TIGR00455 apsK adenylylsulfate 96.2 0.067 1.4E-06 50.2 11.9 28 156-183 16-43 (184)
478 cd03230 ABC_DR_subfamily_A Thi 96.2 0.028 6.2E-07 52.3 9.2 25 159-183 27-51 (173)
479 TIGR02012 tigrfam_recA protein 96.2 0.017 3.7E-07 59.0 8.3 36 147-182 41-79 (321)
480 PRK13709 conjugal transfer nic 96.2 0.021 4.6E-07 70.1 10.4 106 148-254 975-1101(1747)
481 COG1435 Tdk Thymidine kinase [ 96.2 0.033 7.1E-07 52.2 9.3 92 160-252 6-117 (201)
482 cd03214 ABC_Iron-Siderophores_ 96.2 0.038 8.2E-07 51.8 9.9 85 159-243 26-142 (180)
483 PF13521 AAA_28: AAA domain; P 96.2 0.0053 1.2E-07 56.5 4.0 26 161-189 2-27 (163)
484 PRK10436 hypothetical protein; 96.1 0.035 7.6E-07 59.8 10.7 94 147-248 208-316 (462)
485 PRK05986 cob(I)alamin adenolsy 96.1 0.019 4.2E-07 54.0 7.6 104 159-268 23-166 (191)
486 cd03284 ABC_MutS1 MutS1 homolo 96.1 0.02 4.3E-07 55.5 8.1 22 159-180 31-52 (216)
487 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.024 5.3E-07 55.3 8.8 47 159-205 20-74 (235)
488 COG1134 TagH ABC-type polysacc 96.1 0.025 5.4E-07 54.8 8.5 28 159-186 54-81 (249)
489 COG2805 PilT Tfp pilus assembl 96.1 0.065 1.4E-06 53.5 11.4 95 147-249 115-228 (353)
490 PF08303 tRNA_lig_kinase: tRNA 96.1 0.062 1.3E-06 49.0 10.4 126 162-292 3-146 (168)
491 PF00406 ADK: Adenylate kinase 96.1 0.0054 1.2E-07 55.7 3.7 27 163-191 1-27 (151)
492 PF01926 MMR_HSR1: 50S ribosom 96.1 0.063 1.4E-06 46.1 10.3 21 161-181 2-22 (116)
493 TIGR02538 type_IV_pilB type IV 96.1 0.03 6.4E-07 62.2 10.2 94 147-248 306-414 (564)
494 PRK14526 adenylate kinase; Pro 96.1 0.0055 1.2E-07 59.1 3.9 29 160-190 2-30 (211)
495 cd01393 recA_like RecA is a b 96.1 0.072 1.6E-06 51.7 11.8 24 159-182 20-43 (226)
496 COG3910 Predicted ATPase [Gene 96.1 0.04 8.8E-07 51.2 9.2 26 158-183 37-62 (233)
497 COG2874 FlaH Predicted ATPases 96.1 0.035 7.6E-07 52.7 9.0 117 147-268 15-178 (235)
498 PRK12724 flagellar biosynthesi 96.1 0.046 1E-06 57.7 10.9 24 159-182 224-247 (432)
499 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.039 8.5E-07 55.0 10.1 23 159-181 37-59 (259)
500 TIGR01425 SRP54_euk signal rec 96.1 0.04 8.7E-07 58.5 10.4 26 158-183 100-125 (429)
No 1
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-116 Score=874.02 Aligned_cols=400 Identities=54% Similarity=0.864 Sum_probs=384.6
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHH
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDV 201 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i 201 (558)
.||++++||++++|++||+|.+|+.+.|+++++.+.+++++|||||||||||+|++||+..+ ..|..+|++..+++++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f~~~sAv~~gvkdl 89 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAFEALSAVTSGVKDL 89 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--CceEEeccccccHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHH
Q 008664 202 RDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDV 281 (558)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i 281 (558)
+++++++++.. ..+++.||||||||+|++.+|+.||+.||+|.+++||+||+||+|.++++|+|||+++.|.|++.+++
T Consensus 90 r~i~e~a~~~~-~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 90 REIIEEARKNR-LLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred HHHHHHHHHHH-hcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 99999997765 44788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCC
Q 008664 282 EILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361 (558)
Q Consensus 282 ~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
..+|.+.+....+++ ++..+.++++++++|+..++||.|.++|.||.+...+.. +
T Consensus 169 ~~~l~ra~~~~~rgl----~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~--------------~------- 223 (436)
T COG2256 169 KKLLKRALLDEERGL----GGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEP--------------D------- 223 (436)
T ss_pred HHHHHHHHhhhhcCC----CcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCC--------------C-------
Confidence 999999887766666 556777999999999999999999999999999988765 2
Q ss_pred ccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCCh
Q 008664 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADP 441 (558)
Q Consensus 362 ~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~ 441 (558)
..++.++++++++++...||+.||.|||+|||||||+||||+|||+|||+||+++|+||.||+|||+++||||||||||
T Consensus 224 -~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP 302 (436)
T COG2256 224 -EVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADP 302 (436)
T ss_pred -cccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCCh
Confidence 2456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCC
Q 008664 442 LALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYG 521 (558)
Q Consensus 442 ~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~ 521 (558)
+|+.+|++|+++|++||||||+++|||||||||+|||||++|.||++|+++++++ +..+||.||||+||++||+||||
T Consensus 303 ~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKSNavY~A~~~A~~d~~~~--~~~~vP~HLrna~t~lmk~lGy~ 380 (436)
T COG2256 303 NALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKSNAVYTAINAALADAKEG--GSLEVPKHLRNAPTKLMKELGYG 380 (436)
T ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHhc--CCCCCChhhcccchHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred CCCccCCCCCC--CCCCCCCCCCCCCccccCCC
Q 008664 522 KGYIYTPDDPS--AKQSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 522 ~~y~y~~~~~~--~~q~y~p~~~~~~~~~~~~~ 552 (558)
+||+||||||+ |.|+|||++|+++.||+|+.
T Consensus 381 ~gYkY~HD~~~~~v~Q~YlP~~l~~~~yy~p~~ 413 (436)
T COG2256 381 KGYKYPHDYPAGAVGQQYLPDELKNKRYYQPTN 413 (436)
T ss_pred cCcCCCCCCcccccccccCchhhcCcccccCCC
Confidence 99999999996 99999999999999999987
No 2
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-109 Score=807.34 Aligned_cols=413 Identities=56% Similarity=0.906 Sum_probs=378.8
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccH
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGV 198 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~ 198 (558)
...||++++||++++|++||++++++...|+..++.+++++++|||||||||||||+.|+.... .++.|++++++..++
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t 203 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT 203 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch
Confidence 4579999999999999999999999999999999999999999999999999999999999886 447799999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCH
Q 008664 199 KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~ 278 (558)
.++|.+|+.+.+.....+++.||||||||+|++.+|+.||+.+|.|.+++||+||+||+|.++.+|+|||++|.+++++.
T Consensus 204 ~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~ 283 (554)
T KOG2028|consen 204 NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPV 283 (554)
T ss_pred HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCH
Confidence 99999999999887788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhc--ccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCC
Q 008664 279 HDVEILLKRAVDDVNN--GLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356 (558)
Q Consensus 279 ~~i~~iL~~~l~~~~~--~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~ 356 (558)
+.+..||.+.+..+.. +......+..+.+++.++++|+..+.||.|.++|.||.+......+. |
T Consensus 284 n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~------------g-- 349 (554)
T KOG2028|consen 284 NAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRS------------G-- 349 (554)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhc------------C--
Confidence 9999999997763221 11111122345689999999999999999999999999854332210 1
Q ss_pred CCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhcccccc
Q 008664 357 GCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDV 436 (558)
Q Consensus 357 ~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edi 436 (558)
+.....++.+|+++.+++.+..||+.|++|||.||||||||||+|.++++|||+|||++||||+|+||||+++|||||
T Consensus 350 --~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDI 427 (554)
T KOG2028|consen 350 --QSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDI 427 (554)
T ss_pred --CcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhccc
Confidence 111457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhh
Q 008664 437 GLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMK 516 (558)
Q Consensus 437 gla~~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~ 516 (558)
|||||.+|.+|++|++|++++|||||.++||||++|||+||||..+|.||+++++.++++.|+..+||+|||||||++||
T Consensus 428 GlaD~S~L~~Avaa~qav~~vGmPE~dviLAqC~v~lA~APKSievYra~~~vka~ls~~~~~~~~vPlHlRNAPTkLMk 507 (554)
T KOG2028|consen 428 GLADPSALTQAVAAYQAVHFVGMPECDVILAQCVVYLARAPKSIEVYRAYNAVKACLSNHQGPLPEVPLHLRNAPTKLMK 507 (554)
T ss_pred CcCCchhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhcccCCCCCCCchhhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hcCCCCCCccCCCCCC--CCCCCCCCCCCCCccc
Q 008664 517 EIGYGKGYIYTPDDPS--AKQSFLPPSLEGYKFL 548 (558)
Q Consensus 517 ~~~~~~~y~y~~~~~~--~~q~y~p~~~~~~~~~ 548 (558)
+||||+||+|++||+. |.|+|||++|-.+.||
T Consensus 508 eLGY~KgYkYnPdy~~g~v~Qeylp~ell~~~~~ 541 (554)
T KOG2028|consen 508 ELGYGKGYKYNPDYISGPVDQEYLPEELLEKCPN 541 (554)
T ss_pred HhCcCCCccCCCcccccccchhhccHHHHhhccc
Confidence 9999999999999987 9999999999844443
No 3
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=1.1e-89 Score=728.07 Aligned_cols=391 Identities=55% Similarity=0.891 Sum_probs=368.8
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHH
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVR 202 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~ 202 (558)
||+++|||++|+|++||++.++..+.+.+++..+..++++|+|||||||||+|+.+++.++ ..|+.+++...+..+++
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~~~l~a~~~~~~~ir 78 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APFEALSAVTSGVKDLR 78 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEecccccHHHHH
Confidence 7999999999999999999998778899999999999999999999999999999999998 88999999998999999
Q ss_pred HHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHH
Q 008664 203 DAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVE 282 (558)
Q Consensus 203 ~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~ 282 (558)
.+++.+.... ..+++.||||||+|++++.+|+.|++.++++.+++|++||+|+.+.++++|+|||.++.|.+++.+++.
T Consensus 79 ~ii~~~~~~~-~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 79 EVIEEARQRR-SAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred HHHHHHHHhh-hcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence 9988876543 345778999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHhHhcccccccCCccc-ccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCC
Q 008664 283 ILLKRAVDDVNNGLSKSVGGTRV-EVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361 (558)
Q Consensus 283 ~iL~~~l~~~~~~~~~~~~~~~~-~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
.++.+.+.... .++ .+++++++.|++.++||+|.+++.|+.++.. .
T Consensus 158 ~lL~~~l~~~~---------~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~--~---------------------- 204 (413)
T PRK13342 158 QLLKRALEDKE---------RGLVELDDEALDALARLANGDARRALNLLELAALG--V---------------------- 204 (413)
T ss_pred HHHHHHHHHhh---------cCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc--c----------------------
Confidence 99999886521 233 7899999999999999999999999998765 2
Q ss_pred ccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCCh
Q 008664 362 VALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADP 441 (558)
Q Consensus 362 ~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~ 441 (558)
..|+.++++++++.....||+.++.||+++|+|+||+||+|++++++||++|+++|+||.+|+|||+++|+||||||||
T Consensus 205 -~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~ 283 (413)
T PRK13342 205 -DSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADP 283 (413)
T ss_pred -CCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCH
Confidence 2599999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCC
Q 008664 442 LALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYG 521 (558)
Q Consensus 442 ~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~ 521 (558)
+++.+|++|++|++++|||||+++|||||||||+|||||++|.||++|+++|+++ +..+||.||||+||++|+++|||
T Consensus 284 ~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~~~~~~--~~~~vp~~l~~~~~~~~~~~~~~ 361 (413)
T PRK13342 284 NALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALADVREG--GSLPVPLHLRNAPTKLMKELGYG 361 (413)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc--CCCCCChhhcCCCchhHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred CCCccCCCCCC--CCCCCCCCCCCCCccccCCC
Q 008664 522 KGYIYTPDDPS--AKQSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 522 ~~y~y~~~~~~--~~q~y~p~~~~~~~~~~~~~ 552 (558)
+||+||||||+ |.|+|||++|++.+||+|++
T Consensus 362 ~~y~y~~~~~~~~~~q~y~p~~~~~~~~~~~~~ 394 (413)
T PRK13342 362 KGYKYPHDYPNGYVGQQYLPDELKGKRYYEPTE 394 (413)
T ss_pred CCCCCCCCCCCCccccccCCcccCCCeeeCCCC
Confidence 99999999998 99999999999999999986
No 4
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=2.2e-88 Score=749.30 Aligned_cols=405 Identities=46% Similarity=0.718 Sum_probs=373.4
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHH
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVK 199 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~ 199 (558)
...||+++|||++|+|++||++.+++...+++++..++.++++|||||||||||+|+++++.+. ..|+.++++..+..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~~lna~~~~i~ 91 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFSSLNAVLAGVK 91 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--CcceeehhhhhhhH
Confidence 3459999999999999999999998878999999999999999999999999999999999988 78899999888888
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHH
Q 008664 200 DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPH 279 (558)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~ 279 (558)
++++.++.+.......+.+.+|||||||+|++.+|+.|++.++++.+++|++||+|+.+.++++++|||.++.|+|++.+
T Consensus 92 dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~e 171 (725)
T PRK13341 92 DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDE 171 (725)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHH
Confidence 88888877654433345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCC
Q 008664 280 DVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359 (558)
Q Consensus 280 ~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 359 (558)
++..++++++.....++ +..++.+++++++.|++.++||+|.++++|+.++..+... ..+
T Consensus 172 di~~IL~~~l~~~~~~~----g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~-----------~~~----- 231 (725)
T PRK13341 172 DLHQLLKRALQDKERGY----GDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPD-----------EDG----- 231 (725)
T ss_pred HHHHHHHHHHHHHHhhc----CCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC-----------CCC-----
Confidence 99999999998644433 3467899999999999999999999999999987543220 001
Q ss_pred CCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccC
Q 008664 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLA 439 (558)
Q Consensus 360 ~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla 439 (558)
...||.+.++++++.....||+.|+.|||.||+|+|||||||+++|+|||++|+++|+||.||+|||+++|+||||||
T Consensus 232 --~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigla 309 (725)
T PRK13341 232 --LIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLA 309 (725)
T ss_pred --ceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCC
Confidence 234999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcC
Q 008664 440 DPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519 (558)
Q Consensus 440 ~~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~ 519 (558)
||+++.+|++|++|++++|||||+++|+||++|||+|||||++ .||++|+++|+++ +..+||.||||+ |++|+++|
T Consensus 310 dp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~~~~~~--~~~~vP~hlr~~-~~~~~~~g 385 (725)
T PRK13341 310 DPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALKKVREE--QVQDVPNHLRDA-NRDGKAFG 385 (725)
T ss_pred ChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHHhc--CCCCCChHHhCc-chhHHHhC
Confidence 9999999999999999999999999999999999999999999 9999999999998 899999999999 99999999
Q ss_pred CCCCCccCCCCCC--CCCCCCCCCCCCCccccCCC
Q 008664 520 YGKGYIYTPDDPS--AKQSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 520 ~~~~y~y~~~~~~--~~q~y~p~~~~~~~~~~~~~ 552 (558)
||.||+||||||+ |+|+|||++|++++||+|++
T Consensus 386 ~g~~y~yph~~~~~~v~q~ylp~~l~~~~~y~p~~ 420 (725)
T PRK13341 386 DGVGYRYPHAFRDHWVAQQYLPEALQGEVFWQPSR 420 (725)
T ss_pred CCCCCCCCCCCCCCceecccCCcccCCCeeeCCCC
Confidence 9999999999998 99999999999999999975
No 5
>PRK14700 recombination factor protein RarA; Provisional
Probab=100.00 E-value=1.8e-83 Score=626.75 Aligned_cols=278 Identities=37% Similarity=0.592 Sum_probs=257.6
Q ss_pred HhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHH
Q 008664 238 LPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCS 317 (558)
Q Consensus 238 l~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~ 317 (558)
|+.+|+|.+++||+||+||+|.++++|+|||+++.|.+++.+++..+|++.+.. ...+ +...+.++++++++|++
T Consensus 1 Lp~vE~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~-~~~~----~~~~~~i~~~al~~ia~ 75 (300)
T PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQ-DEVL----AKHKFKIDDGLYNAMHN 75 (300)
T ss_pred CCCccCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHh-hhcc----CCcCCCcCHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999976 2223 33468899999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHH
Q 008664 318 NCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHK 397 (558)
Q Consensus 318 ~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~k 397 (558)
.++||+|.++|.||.++...... + ...||.+.++++++++...||+.||.|||+||||||
T Consensus 76 ~a~GDaR~aLN~LE~a~~~~~~~-------------~-------~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~K 135 (300)
T PRK14700 76 YNEGDCRKILNLLERMFLISTRG-------------D-------EIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHK 135 (300)
T ss_pred hcCCHHHHHHHHHHHHHhhcccc-------------C-------CCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHH
Confidence 99999999999999987533210 1 125999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCC
Q 008664 398 SMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAP 477 (558)
Q Consensus 398 s~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~p 477 (558)
||||||+|||+|||+||+++||||.||+|||+++||||||||||+|+.+|++|++|+++|||||||++|||||+|||+||
T Consensus 136 SiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aP 215 (300)
T PRK14700 136 SVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAP 215 (300)
T ss_pred HhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCCCCCccCCCCCC--CCCCCCCCCCCCCccccCCC
Q 008664 478 KSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 478 ks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~y~y~~~~~~--~~q~y~p~~~~~~~~~~~~~ 552 (558)
|||++|.||++|+++|+++ +..+||.||||+ +|.||+||||||+ |.|+|||++|+++ ||+|++
T Consensus 216 KSNs~y~A~~~A~~~v~~~--~~~~VP~hLrn~---------~~~gY~Yphd~~~~~v~Q~YlP~~l~~~-fY~p~~ 280 (300)
T PRK14700 216 KSNACYKALAQAQQLVKSL--GNIDVPQHLKNY---------KDSNYLYPHNYPNSYVIQQYLPDNIIQN-FYQPTA 280 (300)
T ss_pred CchHHHHHHHHHHHHHHhc--CCCCCChhhhCC---------CCCCCCCCCCCCCCceecccCChhhhcc-eeCCCC
Confidence 9999999999999999998 899999999994 2478999999998 8999999999955 999975
No 6
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=100.00 E-value=4e-59 Score=420.05 Aligned_cols=150 Identities=58% Similarity=0.936 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCch
Q 008664 401 GNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSI 480 (558)
Q Consensus 401 gsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~ 480 (558)
|||+|+|+|||++||++||||.||+|||+++||||||||||+|+.+|++|+++++++|||||+++|+|||+|||+|||||
T Consensus 1 GSD~dAAlywlarml~~GeDp~~i~RRL~i~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La~aviyLa~apKSn 80 (168)
T PF12002_consen 1 GSDPDAALYWLARMLEGGEDPRFIARRLIIIASEDIGLADPQALSIAVAAYQAVERIGMPEARIPLAQAVIYLALAPKSN 80 (168)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTGGGSTCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHS----
T ss_pred CCChHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCCCCCccCCCCCC--CCCCCCCCCCCCCccccCCC
Q 008664 481 SIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 481 ~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~y~y~~~~~~--~~q~y~p~~~~~~~~~~~~~ 552 (558)
++|.|+++|+++|+++ +..+||.||||+||++|+++|+|.||+||||||+ |.|+|||++|+|++||+|++
T Consensus 81 s~y~a~~~A~~~v~~~--~~~~VP~hlrd~~t~~~~~lG~g~~Y~Yphd~~~~~v~Q~YlP~~l~~~~~y~p~~ 152 (168)
T PF12002_consen 81 SAYLAINKAKEDVKEG--PSPPVPLHLRDAHTKLMKELGYGKGYKYPHDYPNGYVPQQYLPDELKGKRFYEPTE 152 (168)
T ss_dssp HHHHHHHHHHHHHHHS--------GGGSSSTTCCCHHHTTTTTS--GGGSGGG-TT--SS-GGGTT-B-----S
T ss_pred HHHHHHHHHHHHHHhc--CCCChhHHHHhccchhhhhcCCCCCccccccccCCCcccccCCCcCCCCeeeCCCC
Confidence 9999999999999997 8999999999999999999999999999999998 99999999999999999986
No 7
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-47 Score=408.58 Aligned_cols=299 Identities=22% Similarity=0.348 Sum_probs=269.5
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCC----------------
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAV---------------- 184 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~---------------- 184 (558)
+.|+++|||++|+|++||++++ ..|.+++..++.+ ++||||||||||||+|+++|+.+++
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~---~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVK---KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 4689999999999999999997 9999999999885 4899999999999999999999874
Q ss_pred ------CceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCC
Q 008664 185 ------SYKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTEN 255 (558)
Q Consensus 185 ------~~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n 255 (558)
...++++++. ..+.++++.+.+.+...+ ..+.+.||||||+|+|+..+++.|+..+++ +.+++|++|+ +
T Consensus 79 ~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt-n 156 (472)
T PRK14962 79 SIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRP-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT-N 156 (472)
T ss_pred HHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhCh-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC-C
Confidence 2268888885 568889998887766543 456789999999999999999999999998 7788888876 4
Q ss_pred CCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008664 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335 (558)
Q Consensus 256 ~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~ 335 (558)
+. .+.+++.|||+++.|.+++.+++..+++.++.. +++.+++++++.|++.++||+|.+++.|+.++.
T Consensus 157 ~~-kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~-----------egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 157 LE-KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA-----------EGIEIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred hH-hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43 789999999999999999999999999999987 788999999999999999999999999999876
Q ss_pred HhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008664 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415 (558)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll 415 (558)
++. ..||.+++++++... .-+.+++|+++++++|+++|++|+++|+
T Consensus 225 ~~~------------------------~~It~e~V~~~l~~~----------~~~~i~~li~si~~~d~~~Al~~l~~ll 270 (472)
T PRK14962 225 FSE------------------------GKITLETVHEALGLI----------PIEVVRDYINAIFNGDVKRVFTVLDDVY 270 (472)
T ss_pred hcC------------------------CCCCHHHHHHHHcCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 532 249999999998753 3488999999999999999999999999
Q ss_pred hCCCChHHHHHHHhhccccccccCC-hHhHHHHHHHHHHHHHhCCchhhHHHHHHHH
Q 008664 416 EGGEQPLYIARRLVRFASEDVGLAD-PLALNQAVSCYQACHFLGMPECNVILAQCVA 471 (558)
Q Consensus 416 ~~gedp~~I~rrl~~~a~edigla~-~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~ 471 (558)
.+|+||.+|+|||+++++||+|+|| |+++.++.+++++++.+|||||+++|+|..+
T Consensus 271 ~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~ 327 (472)
T PRK14962 271 YSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLGS 327 (472)
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999999765
No 8
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-39 Score=338.50 Aligned_cols=306 Identities=21% Similarity=0.312 Sum_probs=250.9
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC------------
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------ 185 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------ 185 (558)
..+.+|++||||++|+|++||++++ ..|..++..++.++ +||+|||||||||+|+++|+.+++.
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv---~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAI---GALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 3568999999999999999999998 89999999999864 8999999999999999999998742
Q ss_pred ----------ceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEecc
Q 008664 186 ----------YKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGAT 252 (558)
Q Consensus 186 ----------~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~at 252 (558)
..++++++ ...++++++++.+.+.... ..+++.|+||||+|+|+.+++++||+.||+ +.++||++|
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p-~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAP-MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhh-hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 25777886 4557889999888776543 456789999999999999999999999999 789999998
Q ss_pred CCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHH
Q 008664 253 TENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332 (558)
Q Consensus 253 t~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~ 332 (558)
|+ ...+.++++|||+.+.|.+++.+++..+|++++.. +++.++++++..|++.++||+|.++++|++
T Consensus 159 te--~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~-----------Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq 225 (484)
T PRK14956 159 TE--FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI-----------ENVQYDQEGLFWIAKKGDGSVRDMLSFMEQ 225 (484)
T ss_pred CC--hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCChHHHHHHHHHH
Confidence 65 45899999999999999999999999999999987 789999999999999999999999999999
Q ss_pred HHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHH-HHHHHH
Q 008664 333 SAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD-AAIYWL 411 (558)
Q Consensus 333 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~-aal~~l 411 (558)
++.... ..||.+.|.+++. -.||+++++|+++++++|.+ ++++|+
T Consensus 226 ~i~~~~------------------------~~it~~~V~~~lg----------~~~~~~~~~l~~si~~~d~~~~al~~l 271 (484)
T PRK14956 226 AIVFTD------------------------SKLTGVKIRKMIG----------YHGIEFLTSFIKSLIDPDNHSKSLEIL 271 (484)
T ss_pred HHHhCC------------------------CCcCHHHHHHHhC----------CCCHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 876532 2599999998874 34899999999999999875 899999
Q ss_pred HHHHhCCCChHHHHHHHh-------hccc--ccc-----------------ccCChHhHHHHHHH----HHHHHH---hC
Q 008664 412 ARMLEGGEQPLYIARRLV-------RFAS--EDV-----------------GLADPLALNQAVSC----YQACHF---LG 458 (558)
Q Consensus 412 ~~ll~~gedp~~I~rrl~-------~~a~--edi-----------------gla~~~a~~~~~~~----~~a~~~---~G 458 (558)
++|+++|+||..+++.|+ .... .+. +..++..|..+... ...... =+
T Consensus 272 ~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (484)
T PRK14956 272 ESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRN 351 (484)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999976654443 2221 111 22244444433221 122211 23
Q ss_pred CchhhHHHHHHHHHHhc
Q 008664 459 MPECNVILAQCVAYLAL 475 (558)
Q Consensus 459 ~pe~~~~l~~~~~~l~~ 475 (558)
-++-|+.|.-|++.||.
T Consensus 352 s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 352 SFEIKVFTEIQIKKLVE 368 (484)
T ss_pred CCCchHHHHHHHHHHhc
Confidence 57789999999999986
No 9
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-36 Score=333.72 Aligned_cols=261 Identities=23% Similarity=0.390 Sum_probs=229.3
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeE-EEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSI-IFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~-LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
.+.+|++||||.+|++||||++++ ..|++++..+++++. ||+|||||||||+|+++|+.++|.
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv---~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVL---HALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHH---HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 467899999999999999999998 899999999998775 899999999999999999999753
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++. ..+++++|++++.+.... ..++++|+||||+|+|++..++.||++||+ +.++||++||
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P-~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP-SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh-hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 234666665 367889999988875543 456789999999999999999999999999 7788998886
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
++. ++.+.|+|||+++.|.+++.+++..+|++++.. +++.++++++..|++.++|++|.++++++++
T Consensus 158 e~~--kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~-----------EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQa 224 (944)
T PRK14949 158 DPQ--KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ-----------EQLPFEAEALTLLAKAANGSMRDALSLTDQA 224 (944)
T ss_pred Cch--hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 544 688999999999999999999999999999987 7889999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.... ..|+.+.|.++++.. ..+.+++++++++++|++++++|+++
T Consensus 225 la~~~------------------------~~It~~~V~~llG~i----------D~~~V~~llksI~~~D~~aaL~~l~~ 270 (944)
T PRK14949 225 IAFGG------------------------GQVMLTQVQTMLGSI----------DEQHVIALLKALTDADIGVLMQTCAQ 270 (944)
T ss_pred HHhcC------------------------CcccHHHHHHHhCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 85432 369999999998642 24558899999999999999999999
Q ss_pred HHhCCCChHHHHHHHhhc
Q 008664 414 MLEGGEQPLYIARRLVRF 431 (558)
Q Consensus 414 ll~~gedp~~I~rrl~~~ 431 (558)
|+..|+|+.+|+|+|+..
T Consensus 271 Ll~~G~D~~~ILr~Ll~~ 288 (944)
T PRK14949 271 VLAFGADAQEVLRSLLEL 288 (944)
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 999999999999998865
No 10
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1e-34 Score=280.28 Aligned_cols=281 Identities=25% Similarity=0.436 Sum_probs=236.1
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC----CceEEEEecccc
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV----SYKFVCLSAVTS 196 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~----~~~~i~l~~~~~ 196 (558)
...|+++|||++|+|++||++++ ..|.+.+.++..+++|||||||||||+.|+++|+++++ ...+.++++++.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV---~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVV---QVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHH---HHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 34599999999999999999999 99999999977899999999999999999999999984 234566677654
Q ss_pred -cHHHHHHHHHHHHHhhh--------hcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhh
Q 008664 197 -GVKDVRDAVEDARKLRV--------KSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLL 265 (558)
Q Consensus 197 -~~~~i~~~~~~~~~~~~--------~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~ 265 (558)
|..-+++-+....+... ......|+||||+|.|+.+.|..|++.||+ ...+||+.| |....++..+.
T Consensus 100 rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc--nylsrii~pi~ 177 (346)
T KOG0989|consen 100 RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC--NYLSRIIRPLV 177 (346)
T ss_pred ccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc--CChhhCChHHH
Confidence 44444444444333211 112458999999999999999999999998 667888878 67778999999
Q ss_pred cccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccc
Q 008664 266 SRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKE 345 (558)
Q Consensus 266 sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~ 345 (558)
|||+.|+|+++..+++...|+.++.+ +++.+++++++.|+..++||+|.++..||.+...
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~-----------E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~--------- 237 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASK-----------EGVDIDDDALKLIAKISDGDLRRAITTLQSLSLL--------- 237 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHH-----------hCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhcc---------
Confidence 99999999999999999999999998 9999999999999999999999999999998763
Q ss_pred hhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHH
Q 008664 346 VKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIA 425 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~ 425 (558)
| ..||...+.+.+. |-...+.|..+.+..+.+|......++..+++.|.+|.+|.
T Consensus 238 --------g--------k~It~~~~~e~~~---------GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lm 292 (346)
T KOG0989|consen 238 --------G--------KRITTSLVNEELA---------GVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLM 292 (346)
T ss_pred --------C--------cccchHHHHHHHh---------ccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHH
Confidence 2 4688666666555 44557788889999999999999999999999999999999
Q ss_pred HHHhhccccccccCChHhHHHHHHHH
Q 008664 426 RRLVRFASEDVGLADPLALNQAVSCY 451 (558)
Q Consensus 426 rrl~~~a~edigla~~~a~~~~~~~~ 451 (558)
+++....-+.+|+.|++--.....-+
T Consensus 293 sQLa~vi~~~~g~~d~~k~~~~~kl~ 318 (346)
T KOG0989|consen 293 SQLAEVIMDIIGLSDEQKAQISLKLF 318 (346)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999888888998887665544433
No 11
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=293.83 Aligned_cols=260 Identities=24% Similarity=0.387 Sum_probs=221.6
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccc-c
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTS-G 197 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~-~ 197 (558)
.||++||||++|+|++||++++ ..|+.++..+..+++||+|||||||||+|+++|+.+.+ ...++++++++. +
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~---~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~ 77 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAV---SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG 77 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHH---HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc
Confidence 4899999999999999999998 88999999988899999999999999999999999842 245788888764 6
Q ss_pred HHHHHHHHHHHHHhhh--hcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 198 VKDVRDAVEDARKLRV--KSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 198 ~~~i~~~~~~~~~~~~--~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
.+.+++.+........ ..+...|+||||+|.|+...|+.|+.++|. ....||+++ |....+.++|+|||.++.|
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~--n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALAC--NTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEe--CCccccchhHHHhhhcccC
Confidence 6677777665533211 124578999999999999999999999987 445566666 4455788999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~ 353 (558)
++++.+++..+|..++.+ +++.++++++++|++.++||+|.++|.||.+.. . .
T Consensus 156 ~~l~~~~l~~~L~~i~~~-----------egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~-~-~-------------- 208 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEA-----------EKVPYVPEGLEAIIFTADGDMRQALNNLQATHS-G-F-------------- 208 (319)
T ss_pred CCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-c-C--------------
Confidence 999999999999999988 899999999999999999999999999995442 1 1
Q ss_pred cCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhcc
Q 008664 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFA 432 (558)
Q Consensus 354 ~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a 432 (558)
..||.+++.++.. ..+++.+..++++++++|.+.|++++.+|+..|++|..|...|....
T Consensus 209 ---------~~i~~~~v~~~~~----------~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~ 268 (319)
T PLN03025 209 ---------GFVNQENVFKVCD----------QPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVV 268 (319)
T ss_pred ---------CCCCHHHHHHHcC----------CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3599999988765 34688999999999999999999999999999999999998886554
No 12
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.7e-34 Score=302.02 Aligned_cols=315 Identities=23% Similarity=0.349 Sum_probs=255.9
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCC-----------------
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAV----------------- 184 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~----------------- 184 (558)
.|+.||||++|+|++||++++ +.|.+++..++.+ ++||+||+|+||||+|+++|+.++|
T Consensus 2 ~la~KyRP~~f~dliGQe~vv---~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~ 78 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLV---RILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCIS 78 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHH
Confidence 478999999999999999998 9999999999885 7999999999999999999998742
Q ss_pred -----CceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCC
Q 008664 185 -----SYKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENP 256 (558)
Q Consensus 185 -----~~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~ 256 (558)
+.+++++++. ..++++++++++.+...+ ..+++.|+||||+|+|+...++.|+++||+ ..++||++||+.
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P-~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~- 156 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLP-ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV- 156 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhcc-ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh-
Confidence 3567888875 568999999999887665 567899999999999999999999999998 678888888543
Q ss_pred CCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 257 SFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 257 ~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
.++.++++|||+.+.|.+++.+++..++.+++.+ +++.+++++++.|++.++||+|.+++.|++++.+
T Consensus 157 -~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~-----------Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y 224 (491)
T PRK14964 157 -KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK-----------ENIEHDEESLKLIAENSSGSMRNALFLLEQAAIY 224 (491)
T ss_pred -HHHHHHHHHhheeeecccccHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999988 8999999999999999999999999999999876
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~ 416 (558)
.. ..||.++|+++++.. ..+.+..+++++.++|.+.|+.++.+|+.
T Consensus 225 ~~------------------------~~It~e~V~~llg~~----------~~~~If~L~~aI~~~d~~~Al~~l~~Ll~ 270 (491)
T PRK14964 225 SN------------------------NKISEKSVRDLLGCV----------DKHILEDLVEAILLGDAQSALNVFRELCN 270 (491)
T ss_pred cC------------------------CCCCHHHHHHHHccC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 53 269999999998643 23457777888888999999999999999
Q ss_pred CCCChHHHHHHHhhcccc----------ccccC-------------ChHhHHHHHH-HHHHHHHh-CCchhhHHHHHHHH
Q 008664 417 GGEQPLYIARRLVRFASE----------DVGLA-------------DPLALNQAVS-CYQACHFL-GMPECNVILAQCVA 471 (558)
Q Consensus 417 ~gedp~~I~rrl~~~a~e----------digla-------------~~~a~~~~~~-~~~a~~~~-G~pe~~~~l~~~~~ 471 (558)
+| +|..|.++|+.+..+ +..+. .+..+..... ..++.+.+ .-|..++.+..+++
T Consensus 271 ~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~ 349 (491)
T PRK14964 271 TS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMII 349 (491)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 76 788899988866532 11110 1111111111 12223333 45888899999999
Q ss_pred HHhcCCCchHHHHHHHHH
Q 008664 472 YLALAPKSISIYRALGAA 489 (558)
Q Consensus 472 ~l~~~pks~~~~~a~~~a 489 (558)
.||..+--.+--.++++.
T Consensus 350 rl~~~~~~~~~~~~~~~~ 367 (491)
T PRK14964 350 RLCYLSDLPSPQQIIKKI 367 (491)
T ss_pred HHHhcCCCCCHHHHHHHH
Confidence 999877776665555433
No 13
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.1e-34 Score=308.91 Aligned_cols=255 Identities=24% Similarity=0.416 Sum_probs=223.1
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
++.+|++||||++|+|||||++++ +.|.+.+..+++++ +||+||+||||||+|+++|+.++|.
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv---~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVL---TALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 467899999999999999999998 99999999999866 6999999999999999999999752
Q ss_pred ---------ceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.+++++++.. .+++++|++++.+.... ..+++.|+||||+|+|+...++.||++||+ +.++||++||
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p-~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP-ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 2567777763 68899999998876544 457889999999999999999999999999 7788999886
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+.. ++.+.++|||+.+.|.+++.+++..+|.+++.. +++.++++++..|++.++|++|.++++++.+
T Consensus 158 ~~~--kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~-----------e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqa 224 (647)
T PRK07994 158 DPQ--KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA-----------EQIPFEPRALQLLARAADGSMRDALSLTDQA 224 (647)
T ss_pred Ccc--ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 543 788999999999999999999999999999987 7889999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.... ..||.+++.++++.. | .+.++++++++.+ +|.+++++|+.+
T Consensus 225 ia~~~------------------------~~it~~~v~~~lg~~----d--~~~~~~ll~al~~----~d~~~~l~~~~~ 270 (647)
T PRK07994 225 IASGN------------------------GQVTTDDVSAMLGTL----D--DDQALSLLEALVE----GDGERVMALINQ 270 (647)
T ss_pred HHhcC------------------------CCcCHHHHHHHHccC----C--HHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 76532 259999999998753 2 3568899999988 899999999999
Q ss_pred HHhCCCChHHHH
Q 008664 414 MLEGGEQPLYIA 425 (558)
Q Consensus 414 ll~~gedp~~I~ 425 (558)
|++.|+|+..+.
T Consensus 271 l~~~g~d~~~~L 282 (647)
T PRK07994 271 LAERGPDWEGLL 282 (647)
T ss_pred HHHhCCCHHHHH
Confidence 999999985443
No 14
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.7e-33 Score=301.73 Aligned_cols=259 Identities=22% Similarity=0.329 Sum_probs=219.1
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
+++.|++||||++|+|||||++++ +.|++++..+++++ +||+||+||||||+++++++.++|.
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv---~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHH---HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 367899999999999999999998 99999999988755 5999999999999999999998742
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++. ..++++++++++...... ..++++|+||||+|+|+...++.||+.||+ ..++||++||
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P-~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP-VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhcc-ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 257788775 357889999998775443 346789999999999999999999999999 5788888885
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ ..++.++|+|||+.|.|.+++.+++..+|++++.. +++.++++++..|++.++||+|.++++|+++
T Consensus 158 d--~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~-----------EgI~id~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 158 D--PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE-----------ERIAFEPQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred C--hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 34788999999999999999999999999999987 8899999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.+.. ..|+.++|..+++.. ..+.+..++..+..+|...++.++..
T Consensus 225 ia~~~------------------------~~It~~~V~~~LG~~----------d~~~i~~ll~aL~~~d~~~~l~~~~~ 270 (830)
T PRK07003 225 IAYSA------------------------NEVTETAVSGMLGAL----------DQTYMVRLLDALAAGDGPEILAVADE 270 (830)
T ss_pred HHhcc------------------------CCcCHHHHHHHhCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 86643 259999999988643 22334455555555999999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
|+..|.|...+...|+
T Consensus 271 l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 271 MALRSLSFSTALQDLA 286 (830)
T ss_pred HHHhCCCHHHHHHHHH
Confidence 9999998865555444
No 15
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.7e-33 Score=299.15 Aligned_cols=308 Identities=24% Similarity=0.356 Sum_probs=244.7
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC--------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS-------------- 185 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~-------------- 185 (558)
+.+|++||||++|++|+||++++ +.|.+++..++. +.+||+||+||||||+|+++|+.++|.
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv---~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVS---RALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 56899999999999999999998 999999999987 566999999999999999999998741
Q ss_pred --------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 186 --------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 186 --------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
..++++++. ..+.+++|++++.....+ ..++++|+||||+|+|+...++.|++.||+ +.+.||++|++
T Consensus 79 ~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P-~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP-TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhh-hcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 257777775 457889999988776543 456789999999999999999999999999 67888888854
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
. .++..+++|||.++.|.+++.+++..+|.+++.+ +++.++++++..|++.++||+|.++++|++++
T Consensus 158 ~--~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k-----------EgI~id~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 158 P--QKLPITVISRCLQFTLRPLAVDEITKHLGAILEK-----------EQIAADQDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred h--HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 3678899999999999999999999999999988 88999999999999999999999999999987
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.+. ...||.++|.++++.. ++ +.+|++++++++ +|...++.++..+
T Consensus 225 ayg------------------------~g~IT~edV~~lLG~~----d~--e~IfdLldAI~k----~d~~~al~~L~el 270 (702)
T PRK14960 225 AYG------------------------QGAVHHQDVKEMLGLI----DR--TIIYDLILAVHQ----NQREKVSQLLLQF 270 (702)
T ss_pred Hhc------------------------CCCcCHHHHHHHhccC----CH--HHHHHHHHHHHh----cCHHHHHHHHHHH
Confidence 653 1369999999998843 22 457899998888 9999999999999
Q ss_pred HhCCCChHHHHHHHh-------hcc-ccccccCC----------------hHhHHHHHH-HHHHHHHhC-CchhhHHHHH
Q 008664 415 LEGGEQPLYIARRLV-------RFA-SEDVGLAD----------------PLALNQAVS-CYQACHFLG-MPECNVILAQ 468 (558)
Q Consensus 415 l~~gedp~~I~rrl~-------~~a-~edigla~----------------~~a~~~~~~-~~~a~~~~G-~pe~~~~l~~ 468 (558)
...|.|+..+...|+ .+- ..+.++.. +..+..... ..+..+.+. -|..|+.|-.
T Consensus 271 ~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm 350 (702)
T PRK14960 271 RYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEM 350 (702)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHH
Confidence 999999865544433 221 12222211 222222111 112223443 3788888888
Q ss_pred HHHHHhc-CCCc
Q 008664 469 CVAYLAL-APKS 479 (558)
Q Consensus 469 ~~~~l~~-~pks 479 (558)
+++.||. .|.+
T Consensus 351 ~llrl~~~~p~~ 362 (702)
T PRK14960 351 CVLRLLAFRPLA 362 (702)
T ss_pred HHHHHHhCCCCC
Confidence 8888765 4443
No 16
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.6e-33 Score=296.26 Aligned_cols=261 Identities=22% Similarity=0.358 Sum_probs=225.1
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC-----------
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS----------- 185 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~----------- 185 (558)
...+.+|+++|||++|+|++||++++ ..|..++..++. +++||+|||||||||+|+++|+.++|.
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv---~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLV---KVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 45678999999999999999999998 899998888876 689999999999999999999998642
Q ss_pred ---------------ceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEE
Q 008664 186 ---------------YKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIV 247 (558)
Q Consensus 186 ---------------~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~ii 247 (558)
..++++++ +..++++++++++.+...+ ..+++.|+||||+|+++...++.|+..+|+ ..++
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P-~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v 160 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP-LQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII 160 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc-ccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence 35677776 4458999999998887654 567889999999999999999999999998 6688
Q ss_pred EEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHH
Q 008664 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVAL 327 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~ 327 (558)
||++|++. .++.+++.|||+.+.|.+++.+++..++..++.+ +++.+++++++.|++.++||+|.++
T Consensus 161 fI~aTte~--~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~-----------egi~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 161 FIFATTEV--QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ-----------ENLKTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred EEEEeCCh--HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 88888543 4788999999999999999999999999999988 8899999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHH
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAA 407 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aa 407 (558)
+.|++++.++... ...||.++|++++.... .+..++++.++.+ .|...|
T Consensus 228 ~~Ldkai~~~~~~---------------------~~~It~~~V~~llg~~~------~~~if~L~~ai~~----~d~~~A 276 (507)
T PRK06645 228 SILDQAASMSAKS---------------------DNIISPQVINQMLGLVD------SSVIIEFVEYIIH----RETEKA 276 (507)
T ss_pred HHHHHHHHhhccC---------------------CCCcCHHHHHHHHCCCC------HHHHHHHHHHHHc----CCHHHH
Confidence 9999998775421 23699999999987642 2345666666666 999999
Q ss_pred HHHHHHHHhCCCChHHHHH
Q 008664 408 IYWLARMLEGGEQPLYIAR 426 (558)
Q Consensus 408 l~~l~~ll~~gedp~~I~r 426 (558)
+.++..++..|+||..|.+
T Consensus 277 l~~l~~L~~~g~~~~~~l~ 295 (507)
T PRK06645 277 INLINKLYGSSVNLEIFIE 295 (507)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 9999999999999986654
No 17
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.7e-33 Score=300.33 Aligned_cols=259 Identities=24% Similarity=0.377 Sum_probs=220.6
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
++.+|++||||++|+|++||++++ +.|.+++..++.++ +||+||+||||||+|+++|+.++|.
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~---~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVV---RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHH---HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 467899999999999999999998 99999999998866 7999999999999999999999742
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.+++++++. ..+++++|++++.+...+ ..++++|+||||+|+|+...++.|+++||+ ..++||++||
T Consensus 79 C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p-~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP-TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred HHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc-ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 247888864 568999999988776543 456789999999999999999999999999 5788888885
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ ..++.++++|||.++.|.+++.+++..++..++.+ +++.++++++..|++.++||+|.+++.|+++
T Consensus 158 d--~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~-----------egi~~~~~al~~ia~~s~GslR~al~lLdq~ 224 (509)
T PRK14958 158 D--HHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE-----------ENVEFENAALDLLARAANGSVRDALSLLDQS 224 (509)
T ss_pred C--hHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4 34678889999999999999999999999999988 7899999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.+. . ..||.++|.++++... .+..++++.++. ..|.+.++..+..
T Consensus 225 ia~~-~-----------------------~~It~~~V~~~lg~~~------~~~i~~ll~al~----~~d~~~~l~~~~~ 270 (509)
T PRK14958 225 IAYG-N-----------------------GKVLIADVKTMLGTIE------PLLLFDILEALA----AKAGDRLLGCVTR 270 (509)
T ss_pred HhcC-C-----------------------CCcCHHHHHHHHCCCC------HHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 7663 1 3699999999987431 223355555544 4999999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
|+..|+|+..|...|+
T Consensus 271 l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 271 LVEQGVDFSNALADLL 286 (509)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999999966655544
No 18
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-32 Score=307.92 Aligned_cols=256 Identities=25% Similarity=0.358 Sum_probs=222.3
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC----------------
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV---------------- 184 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~---------------- 184 (558)
..|.+||||.+|++||||++++ +.|++++..+++++ +||+||+||||||+|++||+.++|
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~---~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVT---EPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHH---HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 3588999999999999999998 99999999998866 899999999999999999999974
Q ss_pred --------CceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 185 --------SYKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 185 --------~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
+..++++++.. .+++++|++.+.+.... ..++++|+||||+|+|+...++.||++||+ ..++||++|+
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p-~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAP-AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhch-hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 24567777643 57899999877664433 456889999999999999999999999999 7888888885
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+. .++.++|+|||+++.|.+++.+++..+|.+++.+ +++.++++++.+|++.++||+|.+++.|+++
T Consensus 159 ~~--~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~-----------EGv~id~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 159 EP--DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ-----------EGVPVEPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred Ch--hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43 3688999999999999999999999999999988 7899999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.+... ..||.+++..++. ..+.+.|..+++.+..+|...++.++.+
T Consensus 226 ia~~~~-----------------------~~IT~e~V~allg----------~~~~~~I~~lidAL~~~D~a~al~~l~~ 272 (824)
T PRK07764 226 LAGAGP-----------------------EGVTYERAVALLG----------VTDSALIDEAVDALAAGDGAALFGTVDR 272 (824)
T ss_pred HhhcCC-----------------------CCCCHHHHHHHhc----------CCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 865432 3599999999886 3467888899999989999999999999
Q ss_pred HHhCCCChHHHHHH
Q 008664 414 MLEGGEQPLYIARR 427 (558)
Q Consensus 414 ll~~gedp~~I~rr 427 (558)
|++.|+++..|.+.
T Consensus 273 Li~~G~dp~~~L~~ 286 (824)
T PRK07764 273 VIEAGHDPRRFAED 286 (824)
T ss_pred HHHcCCCHHHHHHH
Confidence 99999999655433
No 19
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-31 Score=291.08 Aligned_cols=309 Identities=25% Similarity=0.353 Sum_probs=248.0
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC-----------------
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV----------------- 184 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~----------------- 184 (558)
.|.+||||++|+||+||++++ +.|++++..+++++ +||+||+||||||+|+++|+.++|
T Consensus 2 al~~kyRP~~f~eivGq~~i~---~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVT---EPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 477999999999999999998 99999999999877 699999999999999999999873
Q ss_pred -------CceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 185 -------SYKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 185 -------~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
+.+++++++.. .++++++++.+.+...+ ..+.+.|+||||+|+|+...++.||++||+ ..++||++|++
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P-~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAP-AQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhh-hcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 24577787744 48999999988876554 557889999999999999999999999999 78999998865
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
. .++.++++|||+++.|.+++.+++..+|.+++.+ +++.++++++..|++.++||+|.+++.|++++
T Consensus 158 ~--~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~-----------egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 158 P--EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ-----------EGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred h--HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 4899999999999999999999999999999988 78899999999999999999999999999998
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.+... ..||.+++.+++... ..+.+..++..+...|...++.++.++
T Consensus 225 ~~~~~-----------------------~~It~~~v~~llg~~----------~~~~i~~lv~al~~~d~~~al~~l~~l 271 (584)
T PRK14952 225 AGAAD-----------------------THVTYQRALGLLGAT----------DVALIDDAVDALAADDAAALFGAIESV 271 (584)
T ss_pred hccCC-----------------------CCcCHHHHHHHHCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76422 369999999998742 344555556666669999999999999
Q ss_pred HhCCCChHHHHHHHhhc-------cc-c---cccc-----------------CChHhHHHHHHHHHHH--HHhCCchhhH
Q 008664 415 LEGGEQPLYIARRLVRF-------AS-E---DVGL-----------------ADPLALNQAVSCYQAC--HFLGMPECNV 464 (558)
Q Consensus 415 l~~gedp~~I~rrl~~~-------a~-e---digl-----------------a~~~a~~~~~~~~~a~--~~~G~pe~~~ 464 (558)
+..|+||..|...|+.+ .. . .-|+ -.+..|..+......+ ..-|-...|+
T Consensus 272 ~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl 351 (584)
T PRK14952 272 IDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRL 351 (584)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHH
Confidence 99999997665444432 11 1 1112 1123333333333322 2346777899
Q ss_pred HHHHHHHHHhcCCCchH
Q 008664 465 ILAQCVAYLALAPKSIS 481 (558)
Q Consensus 465 ~l~~~~~~l~~~pks~~ 481 (558)
.|-.+++.||..+-+.+
T Consensus 352 ~LE~llikl~~~~~~~~ 368 (584)
T PRK14952 352 LLEVVCARLLLPSASDA 368 (584)
T ss_pred HHHHHHHHHhccccccc
Confidence 99999999998554433
No 20
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-32 Score=295.29 Aligned_cols=259 Identities=23% Similarity=0.391 Sum_probs=225.0
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC--------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV-------------- 184 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~-------------- 184 (558)
++.+|++||||.+|++++||++++ +.|.+++..++.++ +||+||+|+||||+|+.+|+.+.|
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v---~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHAL---NSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 367899999999999999999998 89999999988855 899999999999999999998864
Q ss_pred --------CceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 185 --------SYKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 185 --------~~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
...++++++ ...++++++++++.+...+ ..+++.|+||||+|+|+...++.||++||+ +.++||++||
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p-~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMP-SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhh-hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 135677776 5568899999998876554 567889999999999999999999999999 5788888885
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ ...+.++++|||+++.|.+++.+++..+|.+++.+ +++.++++++..|++.++||+|.+++.|+.+
T Consensus 158 d--~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~-----------egi~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 158 D--YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK-----------ENINSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred C--hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 45788889999999999999999999999999988 7889999999999999999999999999999
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.+.. ..|+.++++++++.. .++.+|++++++++ .|...++.++..
T Consensus 225 i~~~~------------------------~~It~~~V~~~l~~~------~~~~v~~ll~Al~~----~d~~~~l~~~~~ 270 (546)
T PRK14957 225 ISFCG------------------------GELKQAQIKQMLGII------DSEEVYSIINAIID----NDPKAILPAIKN 270 (546)
T ss_pred HHhcc------------------------CCCCHHHHHHHHccC------CHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 87642 259999999998752 25678999999988 899999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
+...|.+...+...|+
T Consensus 271 l~~~~~~~~~~l~~l~ 286 (546)
T PRK14957 271 LALTESSADAVLDRIA 286 (546)
T ss_pred HHHhCCCHHHHHHHHH
Confidence 9988888865554444
No 21
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-32 Score=295.38 Aligned_cols=259 Identities=24% Similarity=0.405 Sum_probs=219.2
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
++.+|++||||++|+||+||++++ +.|.+++..++. +++||+||||||||++|+++|+.+.|.
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~---~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVK---AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 457899999999999999999998 999999999875 889999999999999999999999742
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++. ..++++++.+.+...... ..+++.||||||+|+|+...++.|+++||+ ..++||++|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p-~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP-MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred HHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhh-hcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 236777664 457888888776665443 556789999999999999999999999998 6788888885
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+. ..+.+.|+|||+++.|.+++.+++..+|..++.. +++.+++++++.|++.++||+|.++++|+++
T Consensus 158 ~~--~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~-----------egi~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 158 EP--HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR-----------EGVDYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred Ch--hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43 3677899999999999999999999999999877 7888999999999999999999999999987
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.. . ...||.++|.+++... ..+.++++++++ +++|..+++.|+.+
T Consensus 225 l~~--g----------------------~~~It~d~V~~~lg~~------~~e~vfeLl~AL----~~~D~~aal~~l~~ 270 (624)
T PRK14959 225 LAL--G----------------------ESRLTIDGARGVLGLA------GQELFLRLMEAL----AAQDCLGVANVVRE 270 (624)
T ss_pred HHh--c----------------------CCCcCHHHHHHHhCCC------CHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 532 1 2369999999998653 234466777766 45999999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
|+..|+|+.++.++|+
T Consensus 271 Ll~~g~d~~~iL~~Ll 286 (624)
T PRK14959 271 LLDRGVDMGFFLRELV 286 (624)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999999987765555
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-32 Score=293.20 Aligned_cols=259 Identities=22% Similarity=0.345 Sum_probs=219.0
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
+++.|++||||++|+|||||++++ +.|.+++..+++++ +||+||+||||||+|+.+++.++|.
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv---~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVV---RALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHH---HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 467899999999999999999998 99999999999865 5999999999999999999999852
Q ss_pred --------------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEE
Q 008664 186 --------------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVF 248 (558)
Q Consensus 186 --------------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iil 248 (558)
.+++++++. ..++++++++++...... ..++++|+||||+|+|+...+|.||+.||+ ++++|
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P-~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~F 157 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP-TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch-hcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceE
Confidence 256777765 458899999998876543 456789999999999999999999999999 77889
Q ss_pred EeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHH
Q 008664 249 IGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328 (558)
Q Consensus 249 I~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~ 328 (558)
|++||+. .++.++++|||+.+.|.+++.+++..+|++++.. +++.+++++++.|++.++|++|.+++
T Consensus 158 ILaTtep--~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~-----------Egi~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 158 ILATTDP--QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE-----------EGIAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred EEEeCCh--HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9988643 4788999999999999999999999999999987 78899999999999999999999999
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHH
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal 408 (558)
++++++.+.. ..||.++|.++++.. ..+.+..++..+..+|...++
T Consensus 225 LLdQaia~~~------------------------~~It~~~V~~~LG~~----------d~~~i~~Ll~aL~~~d~~~~l 270 (700)
T PRK12323 225 LTDQAIAYSA------------------------GNVSEEAVRGMLGAI----------DQSYLVRLLDALAAEDGAALL 270 (700)
T ss_pred HHHHHHHhcc------------------------CCcCHHHHHHHhCCC----------CHHHHHHHHHHHHcCCHHHHH
Confidence 9998876542 259999999988643 233444555555568999999
Q ss_pred HHHHHHHhCCCChHHHHHHHh
Q 008664 409 YWLARMLEGGEQPLYIARRLV 429 (558)
Q Consensus 409 ~~l~~ll~~gedp~~I~rrl~ 429 (558)
.++..+...|.|+..+.+.|+
T Consensus 271 ~l~~~l~~~G~d~~~~L~dLl 291 (700)
T PRK12323 271 AIADEMAGRSLSFAGALQDLA 291 (700)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999754444433
No 23
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-32 Score=291.76 Aligned_cols=261 Identities=25% Similarity=0.417 Sum_probs=224.8
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCC---------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAV--------------- 184 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~--------------- 184 (558)
..+|+++|||.+|++++||++++ ..+.+++..++.+ ++||+||+|+|||++|+++|+.+.|
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv---~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIK---KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46899999999999999999998 9999999888764 6999999999999999999999863
Q ss_pred -------CceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 185 -------SYKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 185 -------~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
+..++++++.. .+.++++.+++.+...+ ..+++.|+||||+|.|+...++.|+.+||+ +.+++|++|+.
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P-~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLP-TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhch-hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 23567777654 68889999998877654 456788999999999999999999999998 56788887743
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
...+.++++|||+++.|.+++.+++..+|..++.+ +++.++++++..|++.++||+|.+++.|+.+.
T Consensus 159 --~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k-----------egi~Is~eal~~La~lS~GdlR~AlnlLekL~ 225 (605)
T PRK05896 159 --FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKK-----------EKIKIEDNAIDKIADLADGSLRDGLSILDQLS 225 (605)
T ss_pred --hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35888999999999999999999999999999987 78889999999999999999999999999987
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.+... .||.+++.+++... ..+.+.+++++++++|.++++.|+.+|
T Consensus 226 ~y~~~------------------------~It~e~V~ellg~~----------~~~~Vf~Ll~AI~~kd~~~al~~l~~L 271 (605)
T PRK05896 226 TFKNS------------------------EIDIEDINKTFGLV----------DNNKKINLIELIQKNDIEELRNLINEL 271 (605)
T ss_pred hhcCC------------------------CCCHHHHHHHhccC----------CHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66421 39999999987532 123356778888889999999999999
Q ss_pred HhCCCChHHHHHHHhhcc
Q 008664 415 LEGGEQPLYIARRLVRFA 432 (558)
Q Consensus 415 l~~gedp~~I~rrl~~~a 432 (558)
+..|++|.++.++|+...
T Consensus 272 l~~ge~~~~il~~L~~~~ 289 (605)
T PRK05896 272 ESKGINFEAFCRDLINLL 289 (605)
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 999999999988887553
No 24
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-31 Score=288.27 Aligned_cols=298 Identities=26% Similarity=0.315 Sum_probs=238.7
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeE-EEEcCCCchHHHHHHHHHHHhCC-----------------
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSI-IFWGPPGTGKTTLAKAIVNSVAV----------------- 184 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~-LL~GppGtGKTtLa~~la~~l~~----------------- 184 (558)
-|.+||||.+|+||+||++++ ..|.+++..+++++. ||+|||||||||+|+++|+.+.+
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~---~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVK---EVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 367999999999999999998 999999999988665 99999999999999999999863
Q ss_pred ----CceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCC
Q 008664 185 ----SYKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPS 257 (558)
Q Consensus 185 ----~~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~ 257 (558)
+..++++++. ..+.++++++.+.+...+ ..+.+.||||||+|.++...++.|+..+++ ..+++|++++. .
T Consensus 80 ~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p-~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~--~ 156 (504)
T PRK14963 80 RRGAHPDVLEIDAASNNSVEDVRDLREKVLLAP-LRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE--P 156 (504)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhcc-ccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC--h
Confidence 2346777765 447788888877665543 456789999999999999999999999998 56777777743 3
Q ss_pred CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 008664 258 FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITA 337 (558)
Q Consensus 258 ~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a 337 (558)
..+.+.+.|||.++.|.+++.+++..+|.+++.+ +++.+++++++.|++.++||+|.+++.|+.++..
T Consensus 157 ~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~-----------egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~- 224 (504)
T PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA-----------EGREAEPEALQLVARLADGAMRDAESLLERLLAL- 224 (504)
T ss_pred hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-
Confidence 4788999999999999999999999999999988 7899999999999999999999999999998654
Q ss_pred cccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 008664 338 AVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG 417 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~ 417 (558)
. ..||.++|.+++.... .+.+|++++++.. +|.+.|++++.+|+..
T Consensus 225 -~-----------------------~~It~~~V~~~l~~~~------~~~if~Li~al~~----~d~~~Al~~l~~Ll~~ 270 (504)
T PRK14963 225 -G-----------------------TPVTRKQVEEALGLPP------QERLRGIAAALAQ----GDAAEALSGAAQLYRD 270 (504)
T ss_pred -C-----------------------CCCCHHHHHHHHCCCc------HHHHHHHHHHHHc----CCHHHHHHHHHHHHHc
Confidence 2 2599999999987643 4556777777744 9999999999999999
Q ss_pred CCChHHHHHHHhhccc-----------c-ccccCChHhHHHHHHHHHHH-HH--hCCchhhHHHHHHHHHHhc
Q 008664 418 GEQPLYIARRLVRFAS-----------E-DVGLADPLALNQAVSCYQAC-HF--LGMPECNVILAQCVAYLAL 475 (558)
Q Consensus 418 gedp~~I~rrl~~~a~-----------e-digla~~~a~~~~~~~~~a~-~~--~G~pe~~~~l~~~~~~l~~ 475 (558)
|++|..|.++|...-- + ...++ +..+..++....-. ++ -|. .+..|--+.+.||.
T Consensus 271 G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~l~~~l~~~~~ 340 (504)
T PRK14963 271 GFAARTLVEGLLEAFRAALYAELGLGGGPRLEGA-EPRLLAAMTALDEQMERFARRS--DALSLELALLHALL 340 (504)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCcccccccC-cHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHh
Confidence 9999999988876543 1 11122 33444444432222 33 233 35667777888874
No 25
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4e-32 Score=294.00 Aligned_cols=259 Identities=24% Similarity=0.388 Sum_probs=222.3
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
++.+|++||||++|+||+||++++ +.|.+++..++++ .+||+||+||||||+|+++++.++|.
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv---~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVV---KALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 367899999999999999999998 9999999998875 57999999999999999999997632
Q ss_pred ---------ceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++ ...++++++++++.+.... ..+++.||||||+|.|+...++.||+.||+ +.++||++|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P-~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP-TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh-hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 24566764 3468889999998765543 456789999999999999999999999998 6788888875
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
. ..++...++|||..|.|.+++.+++..+|.+++.. +++.++++++..|++.++||+|.++++|+++
T Consensus 158 d--~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k-----------Egi~id~eAL~~Ia~~A~GslRdAlnLLDqa 224 (709)
T PRK08691 158 D--PHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS-----------EKIAYEPPALQLLGRAAAGSMRDALSLLDQA 224 (709)
T ss_pred C--ccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH-----------cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 34788999999999999999999999999999988 8899999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.+.. ..|+.++|..++.... .+..+++++++.+ +|...++.++..
T Consensus 225 ia~g~------------------------g~It~e~V~~lLG~~d------~~~If~LldAL~~----~d~~~al~~l~~ 270 (709)
T PRK08691 225 IALGS------------------------GKVAENDVRQMIGAVD------KQYLYELLTGIIN----QDGAALLAKAQE 270 (709)
T ss_pred HHhcC------------------------CCcCHHHHHHHHcccC------HHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 87642 2599999999987531 2346777777777 999999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
|+..|.|+..+.+.|+
T Consensus 271 L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 271 MAACAVGFDNALGELA 286 (709)
T ss_pred HHHhCCCHHHHHHHHH
Confidence 9999999977666554
No 26
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.6e-31 Score=291.38 Aligned_cols=262 Identities=25% Similarity=0.413 Sum_probs=223.9
Q ss_pred CCCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCC----------
Q 008664 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVS---------- 185 (558)
Q Consensus 117 ~~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~---------- 185 (558)
....+.+|++||||++|+|++||++.+ +.|.+++..++.+ ++||+||+|+||||+|+++|+.+.|.
T Consensus 7 ~~~~y~~la~KyRP~~f~dliGq~~~v---~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 7 AATPYRVLARKYRPQTFDDLIGQEAMV---RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred CCccchhHHhhhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 345578999999999999999999998 9999999999875 69999999999999999999998742
Q ss_pred -----------------ceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--Cc
Q 008664 186 -----------------YKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GS 245 (558)
Q Consensus 186 -----------------~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~ 245 (558)
..++++++ +..+++++|++++.+...+ ..+.++|+||||+|.|+...++.|+++||+ ..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~ 162 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 162 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence 23455554 3457899999998876654 567889999999999999999999999998 67
Q ss_pred EEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHH
Q 008664 246 IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARV 325 (558)
Q Consensus 246 iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~ 325 (558)
++||++|++. .++.+.++|||+++.|.+++.+++..+|.+++.+ +++.+++++++.|++.++||+|.
T Consensus 163 ~~fIl~tte~--~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k-----------egi~i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 163 VKFIFATTEI--RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK-----------EGVEVEDEALALIARAAEGSVRD 229 (598)
T ss_pred eEEEEEeCCh--hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHH
Confidence 8888887543 3688899999999999999999999999999988 88999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHH
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD 405 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~ 405 (558)
+++.|++++.+.. ..||.++|++++.... .+..++++.++.+ +|.+
T Consensus 230 al~~Ldkli~~g~------------------------g~It~e~V~~llg~~~------~~~if~L~~ai~~----gd~~ 275 (598)
T PRK09111 230 GLSLLDQAIAHGA------------------------GEVTAEAVRDMLGLAD------RARVIDLFEALMR----GDVA 275 (598)
T ss_pred HHHHHHHHHhhcC------------------------CCcCHHHHHHHhCCCC------HHHHHHHHHHHHc----CCHH
Confidence 9999999876531 2599999999987431 2345666665555 8999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHh
Q 008664 406 AAIYWLARMLEGGEQPLYIARRLV 429 (558)
Q Consensus 406 aal~~l~~ll~~gedp~~I~rrl~ 429 (558)
.|+.++.+++..|++|..|.+.|+
T Consensus 276 ~Al~~l~~l~~~G~~p~~il~~L~ 299 (598)
T PRK09111 276 AALAEFRAQYDAGADPVVVLTDLA 299 (598)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999998887777
No 27
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.7e-32 Score=294.05 Aligned_cols=259 Identities=22% Similarity=0.351 Sum_probs=220.9
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
++..|++||||++|+|||||++++ ..|.+++..++.++ +||+||+||||||+|+++|+.++|.
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv---~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVV---QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 367899999999999999999998 99999999999855 5999999999999999999998752
Q ss_pred --------------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEE
Q 008664 186 --------------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVF 248 (558)
Q Consensus 186 --------------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iil 248 (558)
..++++++. ..++++++++++.+...+ ..+++.|+||||+|+|+...++.|++.||+ +.++|
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p-~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP-VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc-ccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 256777764 468889999998775543 456789999999999999999999999999 67888
Q ss_pred EeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHH
Q 008664 249 IGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328 (558)
Q Consensus 249 I~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~ 328 (558)
|++||+. .++...++|||+++.|.+++.+++..+|.+++.+ +++.++++++.+|++.++||+|.+++
T Consensus 158 IL~Ttd~--~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~-----------egi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 158 VLATTDP--QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA-----------ENVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred EEEECCc--hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 8888643 3678889999999999999999999999999988 88999999999999999999999999
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHH
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAI 408 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal 408 (558)
++++++.+.. ..||.++|+++++.. ..+.+..++..+..+|...++
T Consensus 225 lLdq~ia~~~------------------------~~It~~~V~~~Lg~~----------~~~~i~~LldaL~~~d~~~al 270 (618)
T PRK14951 225 LTDQAIAFGS------------------------GQLQEAAVRQMLGSV----------DRSHVFRLIDALAQGDGRTVV 270 (618)
T ss_pred HHHHHHHhcC------------------------CCcCHHHHHHHHcCC----------CHHHHHHHHHHHHcCCHHHHH
Confidence 9999887642 369999999998743 233444445555559999999
Q ss_pred HHHHHHHhCCCChHHHHHHHh
Q 008664 409 YWLARMLEGGEQPLYIARRLV 429 (558)
Q Consensus 409 ~~l~~ll~~gedp~~I~rrl~ 429 (558)
.++..|+..|+++..|.+.|+
T Consensus 271 ~~l~~l~~~G~~~~~il~~l~ 291 (618)
T PRK14951 271 ETADELRLNGLSAASTLEEMA 291 (618)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999987766554
No 28
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-31 Score=292.76 Aligned_cols=258 Identities=23% Similarity=0.388 Sum_probs=223.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCC---------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAV--------------- 184 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~--------------- 184 (558)
+..|+++|||++|+||+||++++ +.|.+++..++.+ .+||+||+|+|||++|+++++.+.|
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~---~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVS---RTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 56689999999999999999998 9999999999875 4699999999999999999999874
Q ss_pred -------CceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 185 -------SYKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 185 -------~~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
+..++++++. ..++++++++++.+...+ ..+++.|+||||+|+|+...++.|+++||+ ..++||++||+
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p-~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP-SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc-ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 2346777754 468899999988876554 556889999999999999999999999998 67888888854
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
. .++.++++|||+.+.|.+++.+++..+|..++.+ +++.++++++..|++.++||+|.+++.|++++
T Consensus 159 ~--~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~-----------egi~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 159 P--HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ-----------EGISISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred h--hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH-----------hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 5899999999999999999999999999999988 88999999999999999999999999999998
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.+... .||.+++.++++.. ..+.+..++..+..+|...++.++.+|
T Consensus 226 ay~g~------------------------~It~edV~~llG~~----------~~~~l~~ll~al~~~d~~~al~~l~~l 271 (576)
T PRK14965 226 AFCGD------------------------AVGDDDVAELLGVV----------DRRLLLDISAAVFGRDTRALLEIVERV 271 (576)
T ss_pred HhccC------------------------CCCHHHHHHHhCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87532 49999999987642 234566777777789999999999999
Q ss_pred HhCCCChHHHHHHHh
Q 008664 415 LEGGEQPLYIARRLV 429 (558)
Q Consensus 415 l~~gedp~~I~rrl~ 429 (558)
+..|+++..+.+.|+
T Consensus 272 ~~~G~~~~~~l~~Ll 286 (576)
T PRK14965 272 DEFGYNMRQFCQELI 286 (576)
T ss_pred HHhCCCHHHHHHHHH
Confidence 999999977665554
No 29
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-31 Score=278.14 Aligned_cols=261 Identities=21% Similarity=0.372 Sum_probs=217.3
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
.+.+|++||||++|++++||++.+ +.+.+++..++.++ +||+||||+||||+|+++|+.+.+.
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~---~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIV---TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHH---HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 357899999999999999999998 89999999988755 6999999999999999999998632
Q ss_pred ---------ceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++.. .+.++++++++.....+ ..+.+.|+||||+|.++...++.|++.+|+ ..+.+|++|+
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p-~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP-SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc-ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 2456666554 57788888887765443 345678999999999999999999999998 5677777775
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ ...+.+++.|||..+.|.|++.+++..+|..++.. +++.+++++++.|++.++||+|.+++.|+.+
T Consensus 158 ~--~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~-----------~g~~i~~~al~~ia~~s~G~~R~al~~l~~~ 224 (363)
T PRK14961 158 D--VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIK-----------ESIDTDEYALKLIAYHAHGSMRDALNLLEHA 224 (363)
T ss_pred C--hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 34688999999999999999999999999999988 7888999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.... ..||.++|.+++.... .+..++++.++ ..+|...++.++..
T Consensus 225 ~~~~~------------------------~~It~~~v~~~l~~~~------~~~i~~l~~ai----~~~~~~~~~~~~~~ 270 (363)
T PRK14961 225 INLGK------------------------GNINIKNVTDMLGLLN------EKQSFLLTDAL----LKKDSKKTMLLLNK 270 (363)
T ss_pred HHhcC------------------------CCCCHHHHHHHHCCCC------HHHHHHHHHHH----HcCCHHHHHHHHHH
Confidence 86632 3699999999987431 22334555554 44999999999999
Q ss_pred HHhCCCChHHHHHHHhhc
Q 008664 414 MLEGGEQPLYIARRLVRF 431 (558)
Q Consensus 414 ll~~gedp~~I~rrl~~~ 431 (558)
++..|++|..|...|+..
T Consensus 271 l~~~g~~~~~il~~l~~~ 288 (363)
T PRK14961 271 ISSIGIEWENILIEMLRF 288 (363)
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 999999998877666543
No 30
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-32 Score=287.42 Aligned_cols=259 Identities=25% Similarity=0.464 Sum_probs=225.4
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
.+..++.+|||++|+|++||++++ ..|..++..++. +.++|+||.||||||+||.+|+.++|.
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~---~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVV---KTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHH---HHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 356799999999999999999998 999999999997 789999999999999999999999842
Q ss_pred ---------ceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.+++++++ +..+++++|++.++....+ ..++++|.+|||+|+|++..+++||+.+|+ ..++||++||
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P-~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP-SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC-ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 34455554 4558999999999997765 677899999999999999999999999999 6799999998
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+. .+++..++|||+.+.|+.++.+++...|..++.+ +++.++++++..|++.++|.+|.++++|+++
T Consensus 158 e~--~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~-----------E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~ 224 (515)
T COG2812 158 EP--QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK-----------EGINIEEDALSLIARAAEGSLRDALSLLDQA 224 (515)
T ss_pred Cc--CcCchhhhhccccccccCCCHHHHHHHHHHHHHh-----------cCCccCHHHHHHHHHHcCCChhhHHHHHHHH
Confidence 64 3899999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
..... ..||.+.|...++.. ..+.+..++..+-..|...++..+..
T Consensus 225 i~~~~------------------------~~It~~~v~~~lG~~----------~~~~~~~~~~~i~~~d~~~~~~~~~~ 270 (515)
T COG2812 225 IAFGE------------------------GEITLESVRDMLGLT----------DIEKLLSLLEAILKGDAKEALRLINE 270 (515)
T ss_pred HHccC------------------------CcccHHHHHHHhCCC----------CHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88764 269999999998753 23334444444444999999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
+++.|.+|..+...|+
T Consensus 271 l~~~G~~~~~~l~dl~ 286 (515)
T COG2812 271 LIEEGKDPEAFLEDLL 286 (515)
T ss_pred HHHhCcCHHHHHHHHH
Confidence 9999999966554444
No 31
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.9e-31 Score=287.13 Aligned_cols=322 Identities=21% Similarity=0.312 Sum_probs=252.2
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC--------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS-------------- 185 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~-------------- 185 (558)
+..|+.||||++|+|++||++++ ..|.+++..++.++ +||+||+|+|||++|+++|+.+.+.
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv---~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVV---ETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 56789999999999999999998 89999999988854 9999999999999999999998742
Q ss_pred --------ceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 186 --------YKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 186 --------~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
..++++++.. .+.++++++.+.+...+ ..+++.|+||||+|.|+...++.|++.+|+ ..++||++|++
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 3567777553 67889999888776554 567889999999999999999999999998 67888888854
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
..++.++|+|||+.+.|.+++.+++..+|..++.. +++.++++++.+|++.++||+|.+++.|++++
T Consensus 159 --~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~-----------egi~id~eAl~lLa~~s~GdlR~alslLdkli 225 (563)
T PRK06647 159 --VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE-----------DQIKYEDEALKWIAYKSTGSVRDAYTLFDQVV 225 (563)
T ss_pred --hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999887 78899999999999999999999999999988
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.+.. ..||.++++++++.. .-+.+..+++++.++|..+++.|+.+|
T Consensus 226 s~~~------------------------~~It~e~V~~llg~~----------~~~~if~LidaI~~~D~~~al~~l~~L 271 (563)
T PRK06647 226 SFSD------------------------SDITLEQIRSKMGLT----------GDEFLEKLASSILNEDAKELLCVLDSV 271 (563)
T ss_pred hhcC------------------------CCCCHHHHHHHhCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6642 259999999998743 346677888999999999999999999
Q ss_pred HhCCCChHHHHH-------HHhhccc-c----ccccCChHhHH----------------HHHHHHHHHHHhCCchhhHHH
Q 008664 415 LEGGEQPLYIAR-------RLVRFAS-E----DVGLADPLALN----------------QAVSCYQACHFLGMPECNVIL 466 (558)
Q Consensus 415 l~~gedp~~I~r-------rl~~~a~-e----digla~~~a~~----------------~~~~~~~a~~~~G~pe~~~~l 466 (558)
+..|++|..+.+ .++.+.. . .+|. .|..+. ....+.+..+. -...++.|
T Consensus 272 l~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~-~~e~l~k~~~~~s~~~L~~~l~~Llea~~~lK~--n~~~~l~l 348 (563)
T PRK06647 272 FLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGI-KAERLPEKLREFDLSQIERAISVLLETYRDLQF--SVNPRYEL 348 (563)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccc-cHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh--CCCcHHHH
Confidence 999999976654 3333321 0 1111 112211 22223333333 34557788
Q ss_pred HHHHHHHhcC---CCchHHHHHHHHHHHHHHhh
Q 008664 467 AQCVAYLALA---PKSISIYRALGAAQKVIRES 496 (558)
Q Consensus 467 ~~~~~~l~~~---pks~~~~~a~~~a~~~~~~~ 496 (558)
..+++-||.. |..-..-..+++..+.++++
T Consensus 349 E~llikl~~~~~~~~~~~~~~~~~~~e~~~~~~ 381 (563)
T PRK06647 349 EINFSKILRLKDYVPNHELIKQIQDLESKLLEH 381 (563)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcC
Confidence 8888888863 33334444555555555543
No 32
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.98 E-value=5.7e-31 Score=287.08 Aligned_cols=259 Identities=27% Similarity=0.451 Sum_probs=224.5
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC--------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV-------------- 184 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~-------------- 184 (558)
.++.|.++|||++|++++||++++ +.|.+++..++.++ +||+||+|||||++|+.+|+.+.|
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~---~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHIT---KTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 356799999999999999999998 99999999988755 899999999999999999999863
Q ss_pred --------CceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 185 --------SYKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 185 --------~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
+.+++++++.. .++++++++.+.+...+ ..+++.|+||||+|+|+...++.|++.+|+ ..++||++|+
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p-~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP-SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 24677887754 57889999998876554 567889999999999999999999999998 5688888875
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ + .++.++++|||+.+.|.+++.+++..+|..++.+ +++.++++++..|++.++||+|.+++.|+++
T Consensus 158 ~-~-~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~-----------egi~i~~~al~~ia~~s~G~~R~al~~Ldq~ 224 (559)
T PRK05563 158 E-P-HKIPATILSRCQRFDFKRISVEDIVERLKYILDK-----------EGIEYEDEALRLIARAAEGGMRDALSILDQA 224 (559)
T ss_pred C-h-hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 3 5789999999999999999999999999999987 8899999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
..+. . ..||.++|.+++... ..+.+..+.+++..+|...++.++.+
T Consensus 225 ~~~~-~-----------------------~~It~~~V~~vlg~~----------~~~~i~~l~~al~~~d~~~al~~l~~ 270 (559)
T PRK05563 225 ISFG-D-----------------------GKVTYEDALEVTGSV----------SQEALDDLVDAIVEGDVAKALKILEE 270 (559)
T ss_pred HHhc-c-----------------------CCCCHHHHHHHhCCC----------CHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8764 2 259999999988643 45667777787877999999999999
Q ss_pred HHhCCCChHHHHHHHh
Q 008664 414 MLEGGEQPLYIARRLV 429 (558)
Q Consensus 414 ll~~gedp~~I~rrl~ 429 (558)
++..|+||..+.+.|+
T Consensus 271 l~~~g~d~~~~l~~L~ 286 (559)
T PRK05563 271 LLDEGKDPNRFIEDLI 286 (559)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999999977665443
No 33
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.98 E-value=1.9e-31 Score=247.33 Aligned_cols=264 Identities=24% Similarity=0.364 Sum_probs=225.2
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecc
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAV 194 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~ 194 (558)
.....||.+||||..+.|++|+++.+ ..+..+.+.+..++++|.|||||||||.+.++|+++- ...-++++|++
T Consensus 11 ~~~~l~wVeKYrP~~l~dIVGNe~tv---~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 11 DKYQLPWVEKYRPSVLQDIVGNEDTV---ERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred ccccchHHHhhCchHHHHhhCCHHHH---HHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 44567899999999999999999998 9999999999999999999999999999999999985 23457899998
Q ss_pred cc-cHHHHHHHHHHHHHhhhh--cCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccc
Q 008664 195 TS-GVKDVRDAVEDARKLRVK--SNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCR 269 (558)
Q Consensus 195 ~~-~~~~i~~~~~~~~~~~~~--~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~ 269 (558)
+. |.+.+|.-++........ .++.+||++||+|.|+...|.+|.+.||- .+..|..++ |.+.++.+++.|||.
T Consensus 88 deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaC--N~s~KIiEPIQSRCA 165 (333)
T KOG0991|consen 88 DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALAC--NQSEKIIEPIQSRCA 165 (333)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhh--cchhhhhhhHHhhhH
Confidence 76 888888877776554323 26788999999999999999999999986 556677766 778899999999999
Q ss_pred eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhh
Q 008664 270 VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEV 349 (558)
Q Consensus 270 ~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~ 349 (558)
+++|..+++.++...|..+++. +++.++++.++.|...++||+|+++|.|+......
T Consensus 166 iLRysklsd~qiL~Rl~~v~k~-----------Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~------------ 222 (333)
T KOG0991|consen 166 ILRYSKLSDQQILKRLLEVAKA-----------EKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGF------------ 222 (333)
T ss_pred hhhhcccCHHHHHHHHHHHHHH-----------hCCCCCcchHHHhhhhccchHHHHHHHHHHHhccc------------
Confidence 9999999999999999998877 89999999999999999999999999999876432
Q ss_pred hccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHh
Q 008664 350 EQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLV 429 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~ 429 (558)
..|+.+.|-.+.... |-.++..++..+-.++.+.|+..++.+.+.|.+|..|..-+.
T Consensus 223 -------------g~Vn~enVfKv~d~P----------hP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 223 -------------GLVNQENVFKVCDEP----------HPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred -------------cccchhhhhhccCCC----------ChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 257777777776543 445555555555568999999999999999999999988777
Q ss_pred hcc
Q 008664 430 RFA 432 (558)
Q Consensus 430 ~~a 432 (558)
+.+
T Consensus 280 Rv~ 282 (333)
T KOG0991|consen 280 RVV 282 (333)
T ss_pred HHH
Confidence 664
No 34
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.98 E-value=5.1e-30 Score=274.16 Aligned_cols=317 Identities=20% Similarity=0.306 Sum_probs=250.5
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC----------------
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV---------------- 184 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~---------------- 184 (558)
..|++||||++|+|++||++++ ..|..++..++.++ +|||||+|+|||++|+++++.+.+
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~---~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVS---KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHH---HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 5799999999999999999998 99999999998865 599999999999999999999852
Q ss_pred ------CceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCC
Q 008664 185 ------SYKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTEN 255 (558)
Q Consensus 185 ------~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n 255 (558)
+..++++++.. .+.++++++++.....+ ..+.+.|+||||+|+|+.+.++.||+.||+ ..++||++|+.
T Consensus 79 ~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P-~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd- 156 (535)
T PRK08451 79 SALENRHIDIIEMDAASNRGIDDIRELIEQTKYKP-SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD- 156 (535)
T ss_pred HHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCc-ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC-
Confidence 23577777653 57889999887754433 456789999999999999999999999998 56778887753
Q ss_pred CCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008664 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335 (558)
Q Consensus 256 ~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~ 335 (558)
+ .++.++++|||++++|.+++.+++..++..++.+ +++.++++++..|++.++||+|.+++.|++++.
T Consensus 157 ~-~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~-----------EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~ 224 (535)
T PRK08451 157 P-LKLPATILSRTQHFRFKQIPQNSIISHLKTILEK-----------EGVSYEPEALEILARSGNGSLRDTLTLLDQAII 224 (535)
T ss_pred h-hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3 6889999999999999999999999999999988 789999999999999999999999999999987
Q ss_pred HhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008664 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415 (558)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll 415 (558)
++. ..||.++|.++++.. ..+.+..++..+...|.+.++.++..+
T Consensus 225 ~~~------------------------~~It~~~V~~~lg~~----------~~~~I~~li~ai~~~d~~~a~~~l~~L- 269 (535)
T PRK08451 225 YCK------------------------NAITESKVADMLGLL----------DPSKLEDFFQAILNQDKEKLFELLKEL- 269 (535)
T ss_pred hcC------------------------CCCCHHHHHHHhCCC----------CHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence 752 259999999987642 234455555566669999999999998
Q ss_pred hCCCChHHHHHHHhhccc-----cccccCChHhH---HHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHH
Q 008664 416 EGGEQPLYIARRLVRFAS-----EDVGLADPLAL---NQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALG 487 (558)
Q Consensus 416 ~~gedp~~I~rrl~~~a~-----edigla~~~a~---~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~ 487 (558)
.|.|+..+...|+.... ++. ......+ ...+...+..-..|.. -++.|.-+++.||.+.+-.+....|+
T Consensus 270 -~g~~~~~~l~~l~~~l~~~~~~~~~-~~~l~~l~r~~riL~~~k~~l~~g~~-~~i~l~~~~~~~~~~~~~~~~~~~~~ 346 (535)
T PRK08451 270 -EDYEAEMVLDEMMLFLKEKFLSKDS-EFSILLYERFFRILSSAKSLLKEGAD-DGFVLLLMLFKMKEALKLKEIDDAIE 346 (535)
T ss_pred -HCCCHHHHHHHHHHHHHHHhhcccc-cccHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 46788777776664443 211 1111112 1233333443444544 45788889999999999888887776
Q ss_pred HHHHHH
Q 008664 488 AAQKVI 493 (558)
Q Consensus 488 ~a~~~~ 493 (558)
...+.+
T Consensus 347 ~l~~~~ 352 (535)
T PRK08451 347 ELEQEK 352 (535)
T ss_pred HHHhhc
Confidence 655443
No 35
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.98 E-value=9.9e-31 Score=286.01 Aligned_cols=317 Identities=23% Similarity=0.364 Sum_probs=245.8
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCC------------
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVS------------ 185 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~------------ 185 (558)
..+.+|+++|||.+|++++||++++ +.|++++..++.+ .+||+||+|+|||++|+++|+.+.|.
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v---~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIV---QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 4567899999999999999999998 9999999998874 57999999999999999999998642
Q ss_pred -------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCC
Q 008664 186 -------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTEN 255 (558)
Q Consensus 186 -------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n 255 (558)
..++++++. ..+.++++++++.+...+ ..+++.|+||||+|.|+...++.|+..||+ ..+++|++|+.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P-~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte- 157 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLP-TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE- 157 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCC-
Confidence 234555543 357888999998887654 567889999999999999999999999998 56888888853
Q ss_pred CCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008664 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335 (558)
Q Consensus 256 ~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~ 335 (558)
..++.++++|||+++.|.+++.+++..+|..++.+ +++.++++++..|++.++|++|.+++.++.+..
T Consensus 158 -~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k-----------egI~id~eAl~~LA~lS~GslR~AlslLekl~~ 225 (725)
T PRK07133 158 -VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEK-----------ENISYEKNALKLIAKLSSGSLRDALSIAEQVSI 225 (725)
T ss_pred -hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34888999999999999999999999999999988 788999999999999999999999999999877
Q ss_pred HhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008664 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415 (558)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll 415 (558)
+.. ..||.+++.+++... .-+.+..+++.+.++|...++.++..|+
T Consensus 226 y~~------------------------~~It~e~V~ellg~~----------~~e~If~Ll~aI~~kd~~~aL~~l~~L~ 271 (725)
T PRK07133 226 FGN------------------------NKITLKNVEELFGLV----------SNENLINLLNLLYSKDIKEVLNILNQIK 271 (725)
T ss_pred hcc------------------------CCCCHHHHHHHHcCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 642 249999999988643 1234556777788899999999999999
Q ss_pred hCCCChHHHHHHHhhcc--------ccc---cccCChHhH----------HHHHH-HHHHHHHh-CCchhhHHHHHHHHH
Q 008664 416 EGGEQPLYIARRLVRFA--------SED---VGLADPLAL----------NQAVS-CYQACHFL-GMPECNVILAQCVAY 472 (558)
Q Consensus 416 ~~gedp~~I~rrl~~~a--------~ed---igla~~~a~----------~~~~~-~~~a~~~~-G~pe~~~~l~~~~~~ 472 (558)
..|++|..|.+.|+... ..+ +...+...+ ..+.. ..++-+.| .-+..++.+-.+++.
T Consensus 272 ~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~ 351 (725)
T PRK07133 272 EQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIK 351 (725)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999977765554321 111 111222211 11111 12222223 345667777788888
Q ss_pred HhcCCCchHHHHHH
Q 008664 473 LALAPKSISIYRAL 486 (558)
Q Consensus 473 l~~~pks~~~~~a~ 486 (558)
|+..+-.-..+.-.
T Consensus 352 L~~~~~~~~~~~~~ 365 (725)
T PRK07133 352 LLALSELEEEDENE 365 (725)
T ss_pred HhhcCCCchhHHhh
Confidence 87765555444333
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.98 E-value=5.1e-32 Score=255.15 Aligned_cols=198 Identities=34% Similarity=0.549 Sum_probs=146.4
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT- 195 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~- 195 (558)
....++++++||++|+|++||+++++..+.+.++... ..+.++|||||||+||||||+.||++++ ..+..+++..
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~--~~~~~~sg~~i 86 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG--VNFKITSGPAI 86 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC-
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC--CCeEeccchhh
Confidence 3457899999999999999999999555555555443 3468999999999999999999999999 7788887743
Q ss_pred ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc--------------------EEEEeccCCC
Q 008664 196 SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--------------------IVFIGATTEN 255 (558)
Q Consensus 196 ~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~--------------------iilI~att~n 255 (558)
....++..++... ..+.||||||||+|++.+|+.|++.||++. +++|||||..
T Consensus 87 ~k~~dl~~il~~l-------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~ 159 (233)
T PF05496_consen 87 EKAGDLAAILTNL-------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA 159 (233)
T ss_dssp -SCHHHHHHHHT---------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG
T ss_pred hhHHHHHHHHHhc-------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc
Confidence 3445565555433 367899999999999999999999999865 4578888654
Q ss_pred CCCCCcHHhhcccce-eeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 256 PSFHLITPLLSRCRV-LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 256 ~~~~l~~aL~sR~~~-i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
..+.++|++||.+ ..+..++.+++..|+.+.... .++.+++++..+|++.|.|.+|-+.++|+++.
T Consensus 160 --g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-----------l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 160 --GLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-----------LNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp --CCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-----------TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred --cccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-----------hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4789999999976 479999999999999987655 79999999999999999999999999999987
Q ss_pred HHhc
Q 008664 335 ITAA 338 (558)
Q Consensus 335 ~~a~ 338 (558)
.++.
T Consensus 227 D~a~ 230 (233)
T PF05496_consen 227 DFAQ 230 (233)
T ss_dssp CCCC
T ss_pred HHHH
Confidence 6653
No 37
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=1.2e-30 Score=277.92 Aligned_cols=255 Identities=21% Similarity=0.322 Sum_probs=214.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC--------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS-------------- 185 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~-------------- 185 (558)
++.|+++|||.+|+|++||++++ ..+.+++..++. +++||+||||+|||++|+.+|+.+.+.
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v---~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVV---AVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHH---HHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 57899999999999999999998 899999999887 558999999999999999999998632
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++. ..+.++++.+.+...... ..+.+.||||||+|.++...++.|+++||+ +.+++|++|+
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~-~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP-SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred HHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 356677653 446788888776554332 346789999999999999999999999999 6777888774
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
...++.+++++||.++.|++++.+++..+|..++.+ +++.+++++++.|+..++||+|.+++.++.+
T Consensus 160 --~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~-----------eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl 226 (451)
T PRK06305 160 --EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ-----------EGIETSREALLPIARAAQGSLRDAESLYDYV 226 (451)
T ss_pred --ChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 335889999999999999999999999999999887 7889999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
..+.. ..||.++|.+++.... .+.+++++ .+++.+|.+.|++|+.+
T Consensus 227 ~~~~~------------------------~~It~~~V~~l~~~~~------~~~vf~L~----~ai~~~d~~~al~~l~~ 272 (451)
T PRK06305 227 VGLFP------------------------KSLDPDSVAKALGLLS------QDSLYTLD----EAITTQNYAQALEPVTD 272 (451)
T ss_pred HHhcc------------------------CCcCHHHHHHHHCCCC------HHHHHHHH----HHHHcCCHHHHHHHHHH
Confidence 76532 2499999999887542 34455555 45566999999999999
Q ss_pred HHhCCCChHHHHH
Q 008664 414 MLEGGEQPLYIAR 426 (558)
Q Consensus 414 ll~~gedp~~I~r 426 (558)
|+..|++|..|..
T Consensus 273 L~~~g~~~~~iL~ 285 (451)
T PRK06305 273 AMNSGVAPAHFLH 285 (451)
T ss_pred HHHcCcCHHHHHH
Confidence 9999999976643
No 38
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.7e-30 Score=278.18 Aligned_cols=318 Identities=22% Similarity=0.296 Sum_probs=249.3
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC--------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV-------------- 184 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~-------------- 184 (558)
++.||+++|||.+|++++||++++ ..|.+++..++..+ +||+||+|+||||+|+.+|+.++|
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~---~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVV---RILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 467999999999999999999998 99999999988755 689999999999999999999863
Q ss_pred --------CceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 185 --------SYKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 185 --------~~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
...++++++ +..+.++++.+.+.+...+ ..+.+.|+||||+|.|+...++.|+.++++ ..+++|++|+
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P-~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP-IKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc-ccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 124566665 3457888998887776654 567889999999999999999999999998 4677777774
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ ...+.+++.+||+++.|.+++.+++..+|..++.. .++.+++++++.|++.++||+|.+++.|+.+
T Consensus 158 ~--~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~-----------egi~id~~al~~La~~s~G~lr~al~~Ldkl 224 (486)
T PRK14953 158 E--YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE-----------EKIEYEEKALDLLAQASEGGMRDAASLLDQA 224 (486)
T ss_pred C--HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 34688899999999999999999999999999988 7889999999999999999999999999999
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.++. ..||.++|++++... ..+.+..+++++..+|.+.|+.++.+
T Consensus 225 ~~~~~------------------------~~It~~~V~~~lg~~----------~~~~vf~Li~ai~~~d~~~al~~l~~ 270 (486)
T PRK14953 225 STYGE------------------------GKVTIKVVEEFLGIV----------SQESVRKFLNLLLESDVDEAIKFLRT 270 (486)
T ss_pred HHhcC------------------------CCcCHHHHHHHhCCC----------CHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 86642 369999999998753 34556677777777999999999999
Q ss_pred HHhCCCChHHHHHHHhhcc-------c---cccccCC----------hHhHHHHHHH-HHHHHHhCCchhhHHHHHHHHH
Q 008664 414 MLEGGEQPLYIARRLVRFA-------S---EDVGLAD----------PLALNQAVSC-YQACHFLGMPECNVILAQCVAY 472 (558)
Q Consensus 414 ll~~gedp~~I~rrl~~~a-------~---edigla~----------~~a~~~~~~~-~~a~~~~G~pe~~~~l~~~~~~ 472 (558)
|+..|++|..|...|+... . .+.=+.+ ...+..+... .++...+-.+..++.+-.+++.
T Consensus 271 L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~E~~ll~ 350 (486)
T PRK14953 271 LEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEKPLEALLYLEDVINKAFSEARTRDPLRAYELAILK 350 (486)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcCCHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 9999999976654444321 1 1110111 2223322222 2333444447788899999999
Q ss_pred HhcCCCchHHHHHHHH
Q 008664 473 LALAPKSISIYRALGA 488 (558)
Q Consensus 473 l~~~pks~~~~~a~~~ 488 (558)
||..+--.+.-..++.
T Consensus 351 l~~~~~~~~~~~~~~~ 366 (486)
T PRK14953 351 LLYVKDIVPISELLKE 366 (486)
T ss_pred HHhhCCCCCHHHHHHh
Confidence 9976665555444443
No 39
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.3e-30 Score=282.39 Aligned_cols=304 Identities=22% Similarity=0.335 Sum_probs=240.6
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
++.+|++||||++|+|++||++++ +.|.+++..++.++ +||+||||+||||+|+++|+.++|.
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~---~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVV---RALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHH---HHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 367899999999999999999998 99999999988865 6999999999999999999999642
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.+++++++. ..++++++++++.+...+ ..+++.|+||||+|+|+...++.||+.||+ +.++||++|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p-~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP-TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc-ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 246667654 557889999998876544 556789999999999999999999999999 6788888886
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+. .++.+.++|||+.+.|.+++.+++..+|.+++.+ +++.++++++..|++.++||+|.++++++++
T Consensus 158 d~--~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~-----------egi~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 158 DP--QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ-----------ENIPFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred Ch--hhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43 3667789999999999999999999999999987 7889999999999999999999999999999
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.+.. ..|+.++++++++.. | .+..+++++++.. .|...++.++..
T Consensus 225 i~~~~------------------------~~I~~~~v~~~~~~~----~--~~~i~~ll~al~~----~~~~~~l~~~~~ 270 (527)
T PRK14969 225 IAYGG------------------------GTVNESEVRAMLGAI----D--QDYLFALLEALLA----QDGAALLAIADA 270 (527)
T ss_pred HHhcC------------------------CCcCHHHHHHHHCCC----C--HHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 87742 369999999998754 1 3446777777765 889999999999
Q ss_pred HHhCCCChHHH-------HHHHhhccccc--cccC--------------ChHhHHHHHH-HHHHHHHhCC-chhhHHHHH
Q 008664 414 MLEGGEQPLYI-------ARRLVRFASED--VGLA--------------DPLALNQAVS-CYQACHFLGM-PECNVILAQ 468 (558)
Q Consensus 414 ll~~gedp~~I-------~rrl~~~a~ed--igla--------------~~~a~~~~~~-~~~a~~~~G~-pe~~~~l~~ 468 (558)
|...|+++..+ .|+++..-.-. .... .+..+..... ..++-+-+.. |..|+.+..
T Consensus 271 l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 350 (527)
T PRK14969 271 MEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTM 350 (527)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 99999887543 45544433211 1111 1222222211 2223344554 888888888
Q ss_pred HHHHHh
Q 008664 469 CVAYLA 474 (558)
Q Consensus 469 ~~~~l~ 474 (558)
+++.|+
T Consensus 351 ~~~r~~ 356 (527)
T PRK14969 351 TLLRML 356 (527)
T ss_pred HHHHHh
Confidence 888776
No 40
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=2.7e-30 Score=272.48 Aligned_cols=259 Identities=22% Similarity=0.339 Sum_probs=216.2
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC--------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS-------------- 185 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~-------------- 185 (558)
...++++|||.+|++|+||++++ +.|++++..++.++ +||+||||+||||+|+++|+.+.+.
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~---~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHIT---RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHH---HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 46789999999999999999998 89999999998865 9999999999999999999999752
Q ss_pred ----------------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcE
Q 008664 186 ----------------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSI 246 (558)
Q Consensus 186 ----------------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~i 246 (558)
..++.+++. ..+.++++++.+.....+ ..+.+.|+||||+|+++...++.|+.++|+ ...
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p-~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t 158 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGP-QKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA 158 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhch-hcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe
Confidence 135555553 345888998877775544 567889999999999999999999999998 467
Q ss_pred EEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHH
Q 008664 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~ 326 (558)
+||++|++ ..++.+++.+||.++.|.+++.+++..++...+.. +++.+++++++.|++.++||+|.+
T Consensus 159 ~~Il~t~~--~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~-----------~g~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 159 IFIFATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEA-----------EGISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred EEEEEeCC--hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 77776643 35888999999999999999999999999999987 788999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHH
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADA 406 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~a 406 (558)
++.|+.+..++... . + ...||.++|.+++.... .+..++++.++.+ .+...
T Consensus 226 ~~~L~kl~~~~~~~-----------~-~-------~~~It~~~v~~~v~~~~------~~~vf~l~~ai~~----~~~~~ 276 (397)
T PRK14955 226 QSILDQVIAFSVES-----------E-G-------EGSIRYDKVAELLNYID------DEHFFAVTDAVAD----GDAVA 276 (397)
T ss_pred HHHHHHHHHhcccc-----------C-C-------CCccCHHHHHHHHCCCC------HHHHHHHHHHHHc----CCHHH
Confidence 99999998875310 0 1 34799999999986532 2344566666655 99999
Q ss_pred HHHHHHHHHhCCCChHHHH
Q 008664 407 AIYWLARMLEGGEQPLYIA 425 (558)
Q Consensus 407 al~~l~~ll~~gedp~~I~ 425 (558)
|+.++..|+..|++|..|.
T Consensus 277 al~~~~~l~~~~~~~~~iL 295 (397)
T PRK14955 277 MLDVAQFVIRNGYDEQDFL 295 (397)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 9999999999999997654
No 41
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=5.6e-30 Score=279.48 Aligned_cols=259 Identities=21% Similarity=0.356 Sum_probs=217.2
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC--------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS-------------- 185 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~-------------- 185 (558)
+..++++|||.+|++|+||++++ +.|++++..++.++ +||+||+||||||+|+++|+.+.|.
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~---~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHIT---HTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 46789999999999999999998 89999999988855 9999999999999999999999752
Q ss_pred ----------------ceEEEEec-ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcE
Q 008664 186 ----------------YKFVCLSA-VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSI 246 (558)
Q Consensus 186 ----------------~~~i~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~i 246 (558)
..++.+++ ...++++++.+.+.....+ ..+.+.|+||||+|.|+...++.|+++||+ +..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~t 158 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHA 158 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCe
Confidence 23455554 3346889999887776544 667889999999999999999999999999 567
Q ss_pred EEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHH
Q 008664 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~ 326 (558)
+||++|++ ..++.+++.+||+++.|.+++.+++..+|..++.. +++.+++++++.|++.++||+|.+
T Consensus 159 v~IL~t~~--~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~-----------egi~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 159 IFIFATTE--LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA-----------EGIQIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred EEEEEeCC--hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHhCCCHHHH
Confidence 77877743 35888999999999999999999999999999987 788999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHH
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADA 406 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~a 406 (558)
++.|+.++.+.... + ....||.++|.+++.... .+..++++.++.+ .|...
T Consensus 226 l~eLeKL~~y~~~~-------------~------~~~~It~~~V~~lv~~~~------e~~iF~L~dai~~----~d~~~ 276 (620)
T PRK14954 226 QSILDQVIAFSVGS-------------E------AEKVIAYQGVAELLNYID------DEQFFDVTDAIAE----NDAVK 276 (620)
T ss_pred HHHHHHHHHhcccc-------------c------cCCccCHHHHHHHHcCCC------HHHHHHHHHHHHc----CCHHH
Confidence 99999998886210 0 034799999999886431 2344666666655 99999
Q ss_pred HHHHHHHHHhCCCChHHHH
Q 008664 407 AIYWLARMLEGGEQPLYIA 425 (558)
Q Consensus 407 al~~l~~ll~~gedp~~I~ 425 (558)
++.++..|+..|++|..|.
T Consensus 277 al~~l~~Ll~~ge~p~~iL 295 (620)
T PRK14954 277 MLEVARFVIDNGYDEQDFL 295 (620)
T ss_pred HHHHHHHHHHhCCCHHHHH
Confidence 9999999999999997654
No 42
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=3e-29 Score=275.37 Aligned_cols=257 Identities=24% Similarity=0.447 Sum_probs=219.2
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC-------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS------------- 185 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~------------- 185 (558)
.+.||.++|||++|++++||++++ ..|.+++..++. +++||+||+|+|||++|+++|+.+.|.
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~---~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIA---TTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHH---HHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 367999999999999999999998 999999999876 789999999999999999999998742
Q ss_pred -----------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEec
Q 008664 186 -----------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGA 251 (558)
Q Consensus 186 -----------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~a 251 (558)
.+++++++. ..+++.++++++.+.... ..+.+.|+||||+|.|+...++.||++||+ ..++||++
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p-~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP-VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh-hcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 246666664 368889999998775543 456789999999999999999999999999 67888887
Q ss_pred cCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 252 TTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 252 tt~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
|+ ++ ..+.++|+|||+.+.|.+++.+++..++..++.+ +++.++++++..|++.++||+|.++++|+
T Consensus 158 t~-~~-~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k-----------egi~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 158 TT-DP-QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK-----------ESIEIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred eC-Ch-hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH-----------hCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 75 33 3688999999999999999999999999999877 78889999999999999999999999999
Q ss_pred HHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Q 008664 332 ISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWL 411 (558)
Q Consensus 332 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l 411 (558)
....+. ..||.+++.+++... ..+.+..+++++.++|...++.++
T Consensus 225 klsL~~-------------------------~~It~e~V~~lvg~~----------~e~~i~~Ll~ai~~~d~~~al~~~ 269 (620)
T PRK14948 225 QLSLLP-------------------------GPITPEAVWDLLGAV----------PEQDLLNLLKALASNDPESLLDSC 269 (620)
T ss_pred HHHhcc-------------------------CCCCHHHHHHHhcCC----------CHHHHHHHHHHHHCCCHHHHHHHH
Confidence 976652 149999999987643 234455778888889999999999
Q ss_pred HHHHhCCCChHHHHHHH
Q 008664 412 ARMLEGGEQPLYIARRL 428 (558)
Q Consensus 412 ~~ll~~gedp~~I~rrl 428 (558)
.+|+..|++|..|...|
T Consensus 270 ~~Ll~~g~~p~~iL~~L 286 (620)
T PRK14948 270 RQLLDRGREPLAILQGL 286 (620)
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 99999999997664433
No 43
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=2.4e-29 Score=276.16 Aligned_cols=254 Identities=24% Similarity=0.424 Sum_probs=216.9
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC---------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV--------------- 184 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~--------------- 184 (558)
+..|++||||.+|++|+||++++ ..|.+++..++.++ +|||||+|+|||++|+++|+.+.|
T Consensus 4 ~~~~~~kyRP~~f~~viGq~~~~---~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 4 YIVSARKYRPSTFESVVGQEALT---TTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 56799999999999999999998 99999999998865 899999999999999999998863
Q ss_pred --------CceEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 185 --------SYKFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 185 --------~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
+..++.+++.. .+.++++.+++++...+ ..+.+.|+||||+|.|+...++.|+++||+ ...+||++|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPP-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCc-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 24667777653 45889999998876654 567889999999999999999999999999 6678888875
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
.. .++.++|+|||.++.|.+++.+++..+|..++.+ +++.+++++++.|++.++||+|.+++.|+.+
T Consensus 160 ~~--~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~-----------egi~i~~~al~~La~~s~gdlr~al~~Lekl 226 (614)
T PRK14971 160 EK--HKILPTILSRCQIFDFNRIQVADIVNHLQYVASK-----------EGITAEPEALNVIAQKADGGMRDALSIFDQV 226 (614)
T ss_pred Cc--hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43 5899999999999999999999999999999988 8899999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
+.++.. .||.+++.+.+.... .+..++++ ..+..++...++..+..
T Consensus 227 ~~y~~~------------------------~It~~~V~~~l~~~~------~~~iF~L~----dai~~~~~~~al~ll~~ 272 (614)
T PRK14971 227 VSFTGG------------------------NITYKSVIENLNILD------YDYYFRLT----DALLAGKVSDSLLLFDE 272 (614)
T ss_pred HHhccC------------------------CccHHHHHHHhCCCC------HHHHHHHH----HHHHcCCHHHHHHHHHH
Confidence 877532 399999888876421 22334444 44455899999999999
Q ss_pred HHhCCCChHHHH
Q 008664 414 MLEGGEQPLYIA 425 (558)
Q Consensus 414 ll~~gedp~~I~ 425 (558)
|+..|++|..|.
T Consensus 273 Ll~~g~~~~~iL 284 (614)
T PRK14971 273 ILNKGFDGSHFI 284 (614)
T ss_pred HHHcCCCHHHHH
Confidence 999999997654
No 44
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.97 E-value=1.1e-28 Score=255.73 Aligned_cols=261 Identities=24% Similarity=0.380 Sum_probs=208.7
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC---ceEEEEeccccc-
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS---YKFVCLSAVTSG- 197 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~---~~~i~l~~~~~~- 197 (558)
.+|.++|||.+|++++|+++.+ ..+..++..+..++++|+||||||||++|+++++.+.+. ..++.+++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~---~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVV---ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD 79 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHH---HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh
Confidence 4899999999999999999998 999999999888899999999999999999999998632 345666664321
Q ss_pred --------------------------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEE
Q 008664 198 --------------------------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFI 249 (558)
Q Consensus 198 --------------------------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI 249 (558)
...++.++..........+...+|||||+|.++...++.|+.+++. ....+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~I 159 (337)
T PRK12402 80 QGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFI 159 (337)
T ss_pred cchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEE
Confidence 1223333333322222234668999999999999999999999986 334555
Q ss_pred eccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHH
Q 008664 250 GATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNA 329 (558)
Q Consensus 250 ~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~ 329 (558)
++++ ++ ..+.+.|.+||..+.|.|++.+++..++...+.+ .++.+++++++.|++.++||+|.+++.
T Consensus 160 l~~~-~~-~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 160 IATR-QP-SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA-----------EGVDYDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred EEeC-Ch-hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 33 3677899999999999999999999999999887 788899999999999999999999999
Q ss_pred HHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHH
Q 008664 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIY 409 (558)
Q Consensus 330 Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~ 409 (558)
|+.++.. ...||.+++++++... ...+.+..+++.+..+|...|+.
T Consensus 227 l~~~~~~-------------------------~~~It~~~v~~~~~~~---------~~~~~i~~l~~ai~~~~~~~a~~ 272 (337)
T PRK12402 227 LQTAALA-------------------------AGEITMEAAYEALGDV---------GTDEVIESLLDAAEAGDFTDARK 272 (337)
T ss_pred HHHHHHc-------------------------CCCCCHHHHHHHhCCC---------CCHHHHHHHHHHHHcCCHHHHHH
Confidence 9986521 1369999999988742 12345667777777799999999
Q ss_pred HHHHHH-hCCCChHHHHHHHhhcc
Q 008664 410 WLARML-EGGEQPLYIARRLVRFA 432 (558)
Q Consensus 410 ~l~~ll-~~gedp~~I~rrl~~~a 432 (558)
++.+|+ +.|.++..|++.|...+
T Consensus 273 ~l~~l~~~~g~~~~~i~~~l~~~~ 296 (337)
T PRK12402 273 TLDDLLIDEGLSGGEVLEELLRVA 296 (337)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999997 78999999999987543
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.6e-28 Score=270.36 Aligned_cols=255 Identities=24% Similarity=0.380 Sum_probs=215.2
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCC--------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVS-------------- 185 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~-------------- 185 (558)
.+-|.++|||++|+||+||++++ ..|..++..++.. .+||+||+|+|||++|+.+++.+.|.
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~---~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVV---QTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHH---HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 34588999999999999999998 8999999988875 46999999999999999999998631
Q ss_pred ---------ceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 186 ---------YKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 186 ---------~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
..++++++. ..+.++++++++...... ..+.+.||||||+|.|+...++.|+++||+ ...+||++++
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 346677763 467888998887665543 456789999999999999999999999998 5677777664
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+ ...+.+.+.|||+++.|.+++..++..++..++.+ +++.++++++..|++.++||+|.+++.|+.+
T Consensus 159 ~--~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~-----------egl~i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 159 E--VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA-----------EGINLEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred C--hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 34688899999999999999999999999999887 7888999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
..+.. ..||.+++++++.... -+.+..+++.+..+|...++.|+.+
T Consensus 226 ~~y~~------------------------~~It~e~V~~ll~~s~----------~~~vf~Lidal~~~d~~~al~~l~~ 271 (585)
T PRK14950 226 ATTYG------------------------GEISLSQVQSLLGISG----------DEEVKALAEALLAKDLKAALRTLNA 271 (585)
T ss_pred HHhcC------------------------CCCCHHHHHHHhcCCC----------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76531 3699999999987532 2345566777777999999999999
Q ss_pred HHhCCCChHHHHH
Q 008664 414 MLEGGEQPLYIAR 426 (558)
Q Consensus 414 ll~~gedp~~I~r 426 (558)
|+..|+++..|.+
T Consensus 272 L~~~g~~~~~il~ 284 (585)
T PRK14950 272 VAADGADLRQFTR 284 (585)
T ss_pred HHHcCCCHHHHHH
Confidence 9999999987755
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.97 E-value=9.7e-29 Score=258.16 Aligned_cols=260 Identities=28% Similarity=0.498 Sum_probs=215.8
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCC---------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAV--------------- 184 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~--------------- 184 (558)
++||+++|||.+|++++||++.+ ..+..++..++.+ .+||+||||+|||++|+.+++.+.+
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~---~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIV---QTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 36899999999999999999998 9999999988875 5899999999999999999999752
Q ss_pred -------CceEEEEecc-cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 185 -------SYKFVCLSAV-TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 185 -------~~~~i~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
+..++.+++. ..+.++++.+++.+...+ ..+.+.||+|||+|.++...++.|+..+++ ..+++|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p-~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~- 155 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAP-SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT- 155 (355)
T ss_pred HHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCc-ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC-
Confidence 2346667665 335667888888876543 556788999999999999999999999987 5566777663
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
+ ..++.+++.+||..+.|++++.+++..++..++.+ .++.+++++++.|++.++||+|.+.+.++.+.
T Consensus 156 ~-~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~-----------~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 156 E-PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDK-----------EGIKIEDEALELIARAADGSLRDALSLLDQLI 223 (355)
T ss_pred C-HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3 34678899999999999999999999999999987 78889999999999999999999999999998
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.+.. ..||.++|++++.... ....++++ +++..+|...|+.++.+|
T Consensus 224 ~~~~------------------------~~it~~~v~~~~~~~~------~~~i~~l~----~ai~~~~~~~a~~~~~~l 269 (355)
T TIGR02397 224 SFGN------------------------GNITYEDVNELLGLVD------DEKLIELL----EAILNKDTAEALKILDEI 269 (355)
T ss_pred hhcC------------------------CCCCHHHHHHHhCCCC------HHHHHHHH----HHHHcCCHHHHHHHHHHH
Confidence 7642 2499999999886431 12234444 444458999999999999
Q ss_pred HhCCCChHHHHHHHhhc
Q 008664 415 LEGGEQPLYIARRLVRF 431 (558)
Q Consensus 415 l~~gedp~~I~rrl~~~ 431 (558)
++.|++|..|.+.|...
T Consensus 270 ~~~~~~~~~il~~l~~~ 286 (355)
T TIGR02397 270 LESGVDPEKFLEDLIEI 286 (355)
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 99999998877766654
No 47
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.7e-28 Score=257.29 Aligned_cols=257 Identities=25% Similarity=0.417 Sum_probs=212.9
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC----------CceEE
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV----------SYKFV 189 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~----------~~~~i 189 (558)
+.+|++||||.+|+|++||+..+ +.+.+++..++. +++|||||||+|||++|+++++.+.+ +..++
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~---~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHIT---NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 56899999999999999999998 999999998876 47999999999999999999999863 23455
Q ss_pred EEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhc
Q 008664 190 CLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLS 266 (558)
Q Consensus 190 ~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~s 266 (558)
++++.. .+.++++.+++++...+ ..+++.||||||+|.++...++.|+..+++ ...++|++++. ...+.+++.+
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p-~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~--~~kl~~~l~s 157 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPP-QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE--KHKIIPTILS 157 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhcc-ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCC--cccCCHHHHh
Confidence 565433 35678888888775543 456788999999999999999999999987 34566666643 3578899999
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccch
Q 008664 267 RCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEV 346 (558)
Q Consensus 267 R~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~ 346 (558)
||.++.|.+++.+++..++...+.+ +++.+++++++.|+..++||+|.+++.|+.++.+...
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~-----------~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~------- 219 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVK-----------EGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGK------- 219 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------
Confidence 9999999999999999999999987 7889999999999999999999999999999887532
Q ss_pred hhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHH
Q 008664 347 KEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIAR 426 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~r 426 (558)
.||.+++++++.... .+..+++++++ ..++...++.++.+++..|++|..|..
T Consensus 220 -----------------~it~~~v~~~~~~~~------~~~if~l~~ai----~~~~~~~a~~~~~~l~~~~~~~~~il~ 272 (367)
T PRK14970 220 -----------------NITRQAVTENLNILD------YDTYINVTDLI----LENKIPELLLAFNEILRKGFDGHHFIA 272 (367)
T ss_pred -----------------CCCHHHHHHHhCCCC------HHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 299999999887532 22334555555 448999999999999999999987744
Q ss_pred HH
Q 008664 427 RL 428 (558)
Q Consensus 427 rl 428 (558)
-|
T Consensus 273 ~l 274 (367)
T PRK14970 273 GL 274 (367)
T ss_pred HH
Confidence 33
No 48
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.96 E-value=1.9e-27 Score=244.68 Aligned_cols=302 Identities=25% Similarity=0.332 Sum_probs=228.4
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccc
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTS 196 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~ 196 (558)
...+|+++|||++|++++|+++.+ ..+..+++.+..++++|+||||+|||++++.+++.+.+ ...++++++.+.
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~---~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIV---ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 457899999999999999999988 99999999888889999999999999999999999742 235677765543
Q ss_pred -cHHHHHHHHHHHHHhhhhc-CCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceee
Q 008664 197 -GVKDVRDAVEDARKLRVKS-NKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLT 272 (558)
Q Consensus 197 -~~~~i~~~~~~~~~~~~~~-~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~ 272 (558)
+...++..+.......... ..+.+|+|||+|.+....++.|+.+++. ....+|+++ +...++.+++.+||.++.
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~--~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 80 RGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSC--NYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred cchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEe--CCccccchhHHHHhheee
Confidence 3333444444433222122 4578999999999999999999999986 445566555 333477889999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcc
Q 008664 273 LNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352 (558)
Q Consensus 273 ~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~ 352 (558)
|.+++.+++..++...+.+ .++.+++++++.|++.++||+|.+++.|+.++...
T Consensus 158 ~~~l~~~ei~~~l~~~~~~-----------~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~--------------- 211 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAEN-----------EGIEITDDALEAIYYVSEGDMRKAINALQAAAATG--------------- 211 (319)
T ss_pred eCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---------------
Confidence 9999999999999999987 78889999999999999999999999999877642
Q ss_pred ccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHH-hCCCChHHHHHHHhhc
Q 008664 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML-EGGEQPLYIARRLVRF 431 (558)
Q Consensus 353 ~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll-~~gedp~~I~rrl~~~ 431 (558)
..||.++|.+++.... .+..++++.++.+ ++...|+.++..|+ ..|.++..|+..+...
T Consensus 212 ----------~~it~~~v~~~~~~~~------~~~i~~l~~~~~~----~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~ 271 (319)
T PRK00440 212 ----------KEVTEEAVYKITGTAR------PEEIREMIELALN----GDFTEAREKLRDLMIDYGLSGEDIIKQIHRE 271 (319)
T ss_pred ----------CCCCHHHHHHHhCCCC------HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2599999999986532 2234566666654 88999999999988 4899999998888654
Q ss_pred cccccccCChHhHHHHHH---HHHHHHHhCCchhhHHHHHHHHHHhc
Q 008664 432 ASEDVGLADPLALNQAVS---CYQACHFLGMPECNVILAQCVAYLAL 475 (558)
Q Consensus 432 a~edigla~~~a~~~~~~---~~~a~~~~G~pe~~~~l~~~~~~l~~ 475 (558)
+.. ..-++..+..++. -.+-.-..| -+.++.|...++-+|.
T Consensus 272 ~~~--~~~~~~~l~~~~~~~~~~d~~~k~g-~~~~~~le~~i~~~~~ 315 (319)
T PRK00440 272 VWS--LDIPEELKVELIDAIGEADFRITEG-ANERIQLEALLAKLAL 315 (319)
T ss_pred HHh--cCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
Confidence 432 1123333333322 233333467 3777777666666654
No 49
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.95 E-value=2e-26 Score=220.68 Aligned_cols=248 Identities=26% Similarity=0.407 Sum_probs=196.8
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHcCC-----CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-cc
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR-----LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT-SG 197 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~-----~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~-~~ 197 (558)
.....||++|+|++||++++ +.+.-+++..+ +.++||+||||.||||||+.||++++ ..+-..++.. ..
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk---~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg--vn~k~tsGp~leK 90 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVK---EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG--VNLKITSGPALEK 90 (332)
T ss_pred hhcccCcccHHHhcChHHHH---HHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc--CCeEecccccccC
Confidence 45568999999999999998 77766665543 47999999999999999999999999 4444333321 23
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC--------------------cEEEEeccCCCCC
Q 008664 198 VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG--------------------SIVFIGATTENPS 257 (558)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~--------------------~iilI~att~n~~ 257 (558)
..++-.++... ..+.|+||||||++++...+.|.+.||+. .+++|||||.-.
T Consensus 91 ~gDlaaiLt~L-------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G- 162 (332)
T COG2255 91 PGDLAAILTNL-------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG- 162 (332)
T ss_pred hhhHHHHHhcC-------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc-
Confidence 34444444432 37799999999999999999999999872 267999998643
Q ss_pred CCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 258 FHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 258 ~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
.+..+|+.||- +.++.-++.+|+..|+.+.... .++.+++++...|++.|.|-+|-+.++|.++..+
T Consensus 163 -~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-----------l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDf 230 (332)
T COG2255 163 -MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-----------LGIEIDEEAALEIARRSRGTPRIANRLLRRVRDF 230 (332)
T ss_pred -cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-----------hCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 78899999994 7889999999999999998866 7889999999999999999999999999999998
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcch--HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEH--YNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~--~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
+... + ...|+.+.+.+++.. +..|..|.+. ..++++++....|+... +.-++..
T Consensus 231 a~V~-------------~-------~~~I~~~ia~~aL~~--L~Vd~~GLd~~D~k~L~~li~~f~GgPVG--l~tia~~ 286 (332)
T COG2255 231 AQVK-------------G-------DGDIDRDIADKALKM--LDVDELGLDEIDRKYLRALIEQFGGGPVG--LDTIAAA 286 (332)
T ss_pred HHHh-------------c-------CCcccHHHHHHHHHH--hCcccccccHHHHHHHHHHHHHhCCCCcc--HHHHHHH
Confidence 8752 3 457999999999986 5677777555 56899999988887654 2344443
Q ss_pred HhCCCChH
Q 008664 415 LEGGEQPL 422 (558)
Q Consensus 415 l~~gedp~ 422 (558)
+ |||..
T Consensus 287 l--ge~~~ 292 (332)
T COG2255 287 L--GEDRD 292 (332)
T ss_pred h--cCchh
Confidence 3 44443
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=99.95 E-value=5.8e-26 Score=245.56 Aligned_cols=255 Identities=24% Similarity=0.366 Sum_probs=197.2
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCC----CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR----LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG 197 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~----~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~ 197 (558)
.+|+++|||+++++++|+++.+ ..+..|+.... .+++||+|||||||||+|+++|+.++ ..++++++++..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~---~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ielnasd~r 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAK---EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIELNASDQR 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHH---HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEEcccccc
Confidence 5899999999999999999998 88888886532 57899999999999999999999999 889999987763
Q ss_pred -HHHHHHHHHHHHHhhhhcC-CceEEEEeCCccCCH----HHHHHHHhhHhcCcEEEEeccCCCCCCCCcH-Hhhcccce
Q 008664 198 -VKDVRDAVEDARKLRVKSN-KRTVLFVDEVHRFNK----SQQDSFLPVIEDGSIVFIGATTENPSFHLIT-PLLSRCRV 270 (558)
Q Consensus 198 -~~~i~~~~~~~~~~~~~~~-~~~il~IDEid~l~~----~~~~~Ll~~le~~~iilI~att~n~~~~l~~-aL~sR~~~ 270 (558)
...++.++..+.......+ .+.||||||+|.++. ..++.|+.+++.....+|+++ |....+.. .|++||..
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~--n~~~~~~~k~Lrsr~~~ 154 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTA--NDPYDPSLRELRNACLM 154 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEec--cCccccchhhHhccceE
Confidence 4556666666544332333 678999999999976 567889999998666666655 33345555 89999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhh
Q 008664 271 LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350 (558)
Q Consensus 271 i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~ 350 (558)
+.|++++.+++..+|+.++.. +++.+++++++.|++.++||+|.+++.|+.++ ..
T Consensus 155 I~f~~~~~~~i~~~L~~i~~~-----------egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a---~~----------- 209 (482)
T PRK04195 155 IEFKRLSTRSIVPVLKRICRK-----------EGIECDDEALKEIAERSGGDLRSAINDLQAIA---EG----------- 209 (482)
T ss_pred EEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHh---cC-----------
Confidence 999999999999999999987 78899999999999999999999999999832 21
Q ss_pred ccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhh
Q 008664 351 QEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVR 430 (558)
Q Consensus 351 ~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~ 430 (558)
...|+.++++.+..+. . ....++++.++.+ +.+.+.++..+. ...+||..+...|..
T Consensus 210 -----------~~~it~~~v~~~~~~d-----~-~~~if~~l~~i~~---~k~~~~a~~~~~---~~~~~~~~i~~~l~e 266 (482)
T PRK04195 210 -----------YGKLTLEDVKTLGRRD-----R-EESIFDALDAVFK---ARNADQALEASY---DVDEDPDDLIEWIDE 266 (482)
T ss_pred -----------CCCCcHHHHHHhhcCC-----C-CCCHHHHHHHHHC---CCCHHHHHHHHH---cccCCHHHHHHHHHh
Confidence 2469999999876421 1 2334566555544 456666654433 345677766666553
Q ss_pred c
Q 008664 431 F 431 (558)
Q Consensus 431 ~ 431 (558)
-
T Consensus 267 n 267 (482)
T PRK04195 267 N 267 (482)
T ss_pred c
Confidence 3
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.94 E-value=1.8e-25 Score=230.55 Aligned_cols=262 Identities=23% Similarity=0.340 Sum_probs=198.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHc-----CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS-----NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-----~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
...|..++||.+|++++||++.+ ..+..++.. ...++++|+||||||||++|+++|+.++ ..+...++..
T Consensus 12 ~~~~~~~~rP~~~~~~vG~~~~~---~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~~~~~~~~ 86 (328)
T PRK00080 12 EDEIERSLRPKSLDEFIGQEKVK---ENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG--VNIRITSGPA 86 (328)
T ss_pred cchhhhhcCcCCHHHhcCcHHHH---HHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCeEEEeccc
Confidence 34567899999999999999998 677666653 2347899999999999999999999998 5554444332
Q ss_pred -ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc--------------------EEEEeccCC
Q 008664 196 -SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--------------------IVFIGATTE 254 (558)
Q Consensus 196 -~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~--------------------iilI~att~ 254 (558)
....++..++.. ...+.+|||||||.++...++.|+..+++.. +.+|++|+.
T Consensus 87 ~~~~~~l~~~l~~-------l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 87 LEKPGDLAAILTN-------LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ccChHHHHHHHHh-------cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 222333333332 2367899999999999999999988887532 457777743
Q ss_pred CCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 255 n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
...+.++|++|| .++.|.+++.+++..++++.+.. .++.++++++..|++.++|++|.+.++|+.+
T Consensus 160 --~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-----------~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 160 --AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-----------LGVEIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred --cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-----------cCCCcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 347889999999 57899999999999999998877 7888999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR 413 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ 413 (558)
...+... + ...|+.++++.++......+......+++++++++++++|++. .+..++.
T Consensus 227 ~~~a~~~-------------~-------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~--~~~~~a~ 284 (328)
T PRK00080 227 RDFAQVK-------------G-------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPV--GLDTLAA 284 (328)
T ss_pred HHHHHHc-------------C-------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCce--eHHHHHH
Confidence 7765431 1 3479999999999765444444445678999999999988853 3456666
Q ss_pred HHhCCCCh-HHHHH-HHh
Q 008664 414 MLEGGEQP-LYIAR-RLV 429 (558)
Q Consensus 414 ll~~gedp-~~I~r-rl~ 429 (558)
.+.-..+. ..+.+ +|+
T Consensus 285 ~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 285 ALGEERDTIEDVYEPYLI 302 (328)
T ss_pred HHCCCcchHHHHhhHHHH
Confidence 65333222 22445 555
No 52
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.94 E-value=2e-24 Score=221.94 Aligned_cols=206 Identities=24% Similarity=0.321 Sum_probs=164.8
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEE-EcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIF-WGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL-~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
.....+|.+||||++|++++||++.. ..+..++..++.++++| +||||+|||++++++++.++ ..++.+++...
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~---~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~~~~i~~~~~ 79 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADK---ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AEVLFVNGSDC 79 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHH---HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--ccceEeccCcc
Confidence 44567999999999999999999998 89999999888766655 89999999999999999988 67788888774
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC-CHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 197 GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF-NKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l-~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
....++..+..........+.+.+|||||+|.+ ..+.++.|..++++ +...+|+++ |....+.+++++||..+.|
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~--n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 80 RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA--NNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc--CChhhchHHHHhhceEEEe
Confidence 444455544443332223356789999999999 67788888888987 556777766 4455889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
+.++.++...++...+....... ..+++.++++++..+++.+.||.|.+++.++...
T Consensus 158 ~~p~~~~~~~il~~~~~~~~~~~----~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~ 214 (316)
T PHA02544 158 GVPTKEEQIEMMKQMIVRCKGIL----EAEGVEVDMKVLAALVKKNFPDFRRTINELQRYA 214 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999998888776555432221 2368889999999999999999999999999664
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.93 E-value=7.9e-25 Score=223.85 Aligned_cols=241 Identities=27% Similarity=0.395 Sum_probs=186.2
Q ss_pred CCCCccccccccCCchHHHHHHHHc-----CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-ccHHHHHHH
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS-----NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT-SGVKDVRDA 204 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~-----~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~-~~~~~i~~~ 204 (558)
++|++|+||++.+ ..+..++.. ....+++|+||||||||++|+++|+.++ ..+....+.. ....++...
T Consensus 1 ~~~~~~iG~~~~~---~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVK---EQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHH---HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeccchhcCchhHHHH
Confidence 4789999999998 778888763 4457899999999999999999999998 4444443321 122333333
Q ss_pred HHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc--------------------EEEEeccCCCCCCCCcHHh
Q 008664 205 VEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--------------------IVFIGATTENPSFHLITPL 264 (558)
Q Consensus 205 ~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~--------------------iilI~att~n~~~~l~~aL 264 (558)
+.. .+.+.+|||||+|.+++..++.|+.++++.. +++|++|+.+ ..+.+++
T Consensus 76 l~~-------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~--~~l~~~l 146 (305)
T TIGR00635 76 LTN-------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA--GMLTSPL 146 (305)
T ss_pred HHh-------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc--cccCHHH
Confidence 222 2356899999999999999999999987533 5677777543 4788999
Q ss_pred hccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCc
Q 008664 265 LSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPV 343 (558)
Q Consensus 265 ~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~ 343 (558)
++|| .++.|.+++.+++.+++++.+.. .++.++++++++|++.++|++|.+.++++.+...+...
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~-----------~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~--- 212 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGL-----------LNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVR--- 212 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHH-----------hCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHc---
Confidence 9999 46799999999999999998876 67889999999999999999999999999887665321
Q ss_pred cchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHH--HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCh
Q 008664 344 KEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYN--LISALHKSMRGNDADAAIYWLARMLEGGEQP 421 (558)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d--~isal~ks~rgsd~~aal~~l~~ll~~gedp 421 (558)
+ ...|+.+.+++++.. +.++..+..+++ ++++++++++|++.. +..++..+ |.++
T Consensus 213 ----------~-------~~~it~~~v~~~l~~--l~~~~~~l~~~~~~~L~al~~~~~~~~~~--~~~ia~~l--g~~~ 269 (305)
T TIGR00635 213 ----------G-------QKIINRDIALKALEM--LMIDELGLDEIDRKLLSVLIEQFQGGPVG--LKTLAAAL--GEDA 269 (305)
T ss_pred ----------C-------CCCcCHHHHHHHHHH--hCCCCCCCCHHHHHHHHHHHHHhCCCccc--HHHHHHHh--CCCc
Confidence 1 346999999999987 455666777887 999999999988643 45555554 3444
Q ss_pred H
Q 008664 422 L 422 (558)
Q Consensus 422 ~ 422 (558)
.
T Consensus 270 ~ 270 (305)
T TIGR00635 270 D 270 (305)
T ss_pred c
Confidence 3
No 54
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-24 Score=207.55 Aligned_cols=291 Identities=14% Similarity=0.266 Sum_probs=206.8
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-------------------
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA------------------- 183 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~------------------- 183 (558)
.|.++|||++++.++++.+.- ..+......+..+++++|||+|.||.|.+-++.+++-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~---~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~ 78 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELA---NLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSK 78 (351)
T ss_pred cchhhcCcchhhhcccHHHHH---HHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCC
Confidence 599999999999999998876 7777777777889999999999999999999999874
Q ss_pred --------CCceEEEEecccccHHH---HHHHHHHHHHhh----hhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcE
Q 008664 184 --------VSYKFVCLSAVTSGVKD---VRDAVEDARKLR----VKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSI 246 (558)
Q Consensus 184 --------~~~~~i~l~~~~~~~~~---i~~~~~~~~~~~----~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~i 246 (558)
.+...++++.++.|..+ +.+++++..+.. ......++++|.|+|.+++++|.+|.+.||. +.+
T Consensus 79 kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 79 KKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred ceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 12344666666666543 566666664431 1123568999999999999999999999998 667
Q ss_pred EEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHH
Q 008664 247 VFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~ 326 (558)
.+|..+ |...++.++++|||..++++.++++|+..++..++++ +++.++.+.+..|++.|+||+|.+
T Consensus 159 RlIl~c--ns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~k-----------E~l~lp~~~l~rIa~kS~~nLRrA 225 (351)
T KOG2035|consen 159 RLILVC--NSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK-----------EGLQLPKELLKRIAEKSNRNLRRA 225 (351)
T ss_pred eEEEEe--cCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH-----------hcccCcHHHHHHHHHHhcccHHHH
Confidence 777766 6667999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCC-CCCccccCHHHHHHHHhhccccccCCC------cchHHHHHHHHHHh
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGC-SPYVALVTLDDAKEAFQCKHLAYDRAG------EEHYNLISALHKSM 399 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~It~e~v~~~l~~~~~~~d~~~------~~~~d~isal~ks~ 399 (558)
+-+||.+...... ..+....++..+|+... +.+...+..+....+++-+...|+-.. ...-.+++.|+..+
T Consensus 226 llmlE~~~~~n~~--~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~ 303 (351)
T KOG2035|consen 226 LLMLEAVRVNNEP--FTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKC 303 (351)
T ss_pred HHHHHHHHhcccc--ccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC
Confidence 9999998876432 22233445555552221 111222222233333333333344211 12224445555422
Q ss_pred cCC----CHHHHHHHHHHHHhCCCCh----HHHHHHHhhc
Q 008664 400 RGN----DADAAIYWLARMLEGGEQP----LYIARRLVRF 431 (558)
Q Consensus 400 rgs----d~~aal~~l~~ll~~gedp----~~I~rrl~~~ 431 (558)
... -...|.+|-+||..|...+ .|+|..|.++
T Consensus 304 d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~iy 343 (351)
T KOG2035|consen 304 DTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFMCIY 343 (351)
T ss_pred CchhHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHH
Confidence 222 2346667777777665554 4566655543
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.91 E-value=8.5e-24 Score=230.01 Aligned_cols=221 Identities=26% Similarity=0.461 Sum_probs=175.3
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~ 192 (558)
..||.+++||.+|++++||++.+ +.++.++......++||+||||||||++|+++++... .+.+|++++
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGI---KALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHH---HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 56999999999999999999998 8888887777778999999999999999999987542 136789999
Q ss_pred ccccc--HHHHH-HHHHHH-------H------------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-----
Q 008664 193 AVTSG--VKDVR-DAVEDA-------R------------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS----- 245 (558)
Q Consensus 193 ~~~~~--~~~i~-~~~~~~-------~------------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~----- 245 (558)
|.... ...+. .++... . ........+++|||||||.|+..+|+.|+++|+++.
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~ 208 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDS 208 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecc
Confidence 86421 11111 111100 0 000112356899999999999999999999997642
Q ss_pred -------------------------EEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhccccccc
Q 008664 246 -------------------------IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSV 300 (558)
Q Consensus 246 -------------------------iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~ 300 (558)
+++|++||.++. .+++++++||..+.|++++.+++..++++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k--------- 278 (531)
T TIGR02902 209 AYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK--------- 278 (531)
T ss_pred ccccccCcccccchhhhcccCcccceEEEEEecCCcc-cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH---------
Confidence 367888876654 899999999999999999999999999999887
Q ss_pred CCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 301 GGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 301 ~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.++.+++++++.|.+++. |.|.+.|+++.++..+..+ + ...|+.+|++.++...
T Consensus 279 --~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~-------------~-------~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 279 --IGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGE-------------G-------RKRILAEDIEWVAENG 332 (531)
T ss_pred --cCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhC-------------C-------CcEEcHHHHHHHhCCc
Confidence 678899999999988865 8999999999998776541 2 3579999999999854
No 56
>PRK04132 replication factor C small subunit; Provisional
Probab=99.89 E-value=4.3e-21 Score=214.40 Aligned_cols=224 Identities=20% Similarity=0.265 Sum_probs=184.2
Q ss_pred EEEEc--CCCchHHHHHHHHHHHhC---CCceEEEEeccc-ccHHHHHHHHHHHHHhhhhc-CCceEEEEeCCccCCHHH
Q 008664 161 IIFWG--PPGTGKTTLAKAIVNSVA---VSYKFVCLSAVT-SGVKDVRDAVEDARKLRVKS-NKRTVLFVDEVHRFNKSQ 233 (558)
Q Consensus 161 ~LL~G--ppGtGKTtLa~~la~~l~---~~~~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~-~~~~il~IDEid~l~~~~ 233 (558)
-++.| |.+.||||+|+++|+++. .+..++++|+++ .+.+.++++++.+....... .+..|+||||+|+|+.++
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence 45668 999999999999999983 236899999999 48999999998876543222 246899999999999999
Q ss_pred HHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHH
Q 008664 234 QDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDA 311 (558)
Q Consensus 234 ~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~a 311 (558)
|++|+++||+ +.+.||++| |+...+.++|+|||+++.|.+++.+++..+|..++.+ +++.+++++
T Consensus 647 QnALLk~lEep~~~~~FILi~--N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~-----------Egi~i~~e~ 713 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSC--NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN-----------EGLELTEEG 713 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEe--CChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh-----------cCCCCCHHH
Confidence 9999999997 778888887 5667899999999999999999999999999999987 788899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHH
Q 008664 312 IEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNL 391 (558)
Q Consensus 312 l~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~ 391 (558)
+..|+..++||+|.++|.||.++... ..||.+++..+..... -+.
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq~~~~~~-------------------------~~It~~~V~~~~~~~~----------~~~ 758 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQAAAALD-------------------------DKITDENVFLVASRAR----------PED 758 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------CCCCHHHHHHHhCCCC----------HHH
Confidence 99999999999999999999886542 2499999988765421 112
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH-hCCCChHHHHHHHhhcc
Q 008664 392 ISALHKSMRGNDADAAIYWLARML-EGGEQPLYIARRLVRFA 432 (558)
Q Consensus 392 isal~ks~rgsd~~aal~~l~~ll-~~gedp~~I~rrl~~~a 432 (558)
+..+...+..++...+...+..++ ..|.++..|...|....
T Consensus 759 I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l 800 (846)
T PRK04132 759 IREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREV 800 (846)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 233333333477888888888877 78999999988887665
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.88 E-value=3.6e-22 Score=225.90 Aligned_cols=227 Identities=19% Similarity=0.296 Sum_probs=183.0
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEE
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCL 191 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l 191 (558)
...+|+++.||..+++++|+++.+ ..+...+.+...++++|+||||||||++++.+|+.+. .+..++.+
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei---~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDEL---ERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHH---HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 456899999999999999999998 7788888888889999999999999999999999872 13667777
Q ss_pred ecccc--c-------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC---------HHHHHHHHhhHhcCcEEEEeccC
Q 008664 192 SAVTS--G-------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN---------KSQQDSFLPVIEDGSIVFIGATT 253 (558)
Q Consensus 192 ~~~~~--~-------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~---------~~~~~~Ll~~le~~~iilI~att 253 (558)
+.... + ...++.+++++.. ..+.||||||+|.+. .+.++.|++.+++|.+.+|++||
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt 319 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEK-----EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTT 319 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhc-----cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecC
Confidence 64322 1 2456666666543 257899999999885 34688999999999999999999
Q ss_pred C---CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHH
Q 008664 254 E---NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DAR 324 (558)
Q Consensus 254 ~---n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R 324 (558)
. ++++..+++|.|||+.+.+.+|+.+++..||+.....++.. .++.++++++..+++.+.. -++
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~-------~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEF-------HHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhc-------cCcccCHHHHHHHHHhhhcccccccCCH
Confidence 7 56678899999999999999999999999999988775433 5788999999999998654 388
Q ss_pred HHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 325 VALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 325 ~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.++.+|+.++....... . . .....|+.+++.+++...
T Consensus 393 kai~lld~a~a~~~~~~---------~--~-----~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRP---------K--A-----KKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHHhhhhhhcCc---------c--c-----ccccccCHHHHHHHHHHH
Confidence 99999999887544310 0 0 002469999999998764
No 58
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.88 E-value=9.4e-22 Score=191.60 Aligned_cols=237 Identities=23% Similarity=0.248 Sum_probs=181.8
Q ss_pred CCCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC----ceEEEEe
Q 008664 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS----YKFVCLS 192 (558)
Q Consensus 117 ~~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~----~~~i~l~ 192 (558)
......||.++|||.+++|+++|++.+ ..+.+....++.+++|+|||||+|||+...+.|+.+.+. ..+.+++
T Consensus 24 ~~~~~~pwvekyrP~~l~dv~~~~ei~---st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 24 SPQYPQPWVEKYRPPFLGIVIKQEPIW---STENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CcccCCCCccCCCCchhhhHhcCCchh---hHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 345678999999999999999999999 899999888899999999999999999999999998642 2245667
Q ss_pred cccc-cHHHHHHHHHHHHHh---hhhc--CCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhc
Q 008664 193 AVTS-GVKDVRDAVEDARKL---RVKS--NKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLS 266 (558)
Q Consensus 193 ~~~~-~~~~i~~~~~~~~~~---~~~~--~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~s 266 (558)
+++. +.+-+++-+...... .... ...+++|+||+|.++.++|++|.+.++..+.-+-+++..|+...+.+++.+
T Consensus 101 aSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qs 180 (360)
T KOG0990|consen 101 ASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQS 180 (360)
T ss_pred ccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhc
Confidence 6655 444444433332221 1111 267899999999999999999999998843322222444888899999999
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCcc-c
Q 008664 267 RCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVK-E 345 (558)
Q Consensus 267 R~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~-~ 345 (558)
||..++|.|++..+....+..+++. +....+++....+++.+.||+|.++|.|+..........+.. .
T Consensus 181 Rctrfrf~pl~~~~~~~r~shi~e~-----------e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~ 249 (360)
T KOG0990|consen 181 RCTRFRFAPLTMAQQTERQSHIRES-----------EQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNP 249 (360)
T ss_pred ccccCCCCCCChhhhhhHHHHHHhc-----------chhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 9999999999999999999999987 888899999999999999999999999999877654321111 1
Q ss_pred hhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 346 VKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
...+..|+| .....+++++++.
T Consensus 250 ~~~vy~c~g---------~p~~~dI~~I~~~ 271 (360)
T KOG0990|consen 250 NDLVYQCKG---------APQPSDIRQIIEK 271 (360)
T ss_pred hhhHHHhcC---------CCChhHHHHHHHH
Confidence 223444544 3444466666653
No 59
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=185.52 Aligned_cols=215 Identities=22% Similarity=0.355 Sum_probs=165.7
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcC------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
.....+..+..+|+|+|||+++..+-+.+.+.+++. .+.++|||||||||||.+|+++|++.. .+++.+.+.
T Consensus 108 ~~~~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vkat 185 (368)
T COG1223 108 REEDREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKAT 185 (368)
T ss_pred chhhhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--CceEEechH
Confidence 334456666779999999999986666777777663 248999999999999999999999999 999999875
Q ss_pred c-------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH------------HHHHHHHhhHhc----CcEEEEec
Q 008664 195 T-------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK------------SQQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 195 ~-------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~------------~~~~~Ll~~le~----~~iilI~a 251 (558)
. .+...++++++.+++. .++|+||||+|.+.- +..|+||.-|+. ..++.|++
T Consensus 186 ~liGehVGdgar~Ihely~rA~~~-----aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 186 ELIGEHVGDGARRIHELYERARKA-----APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc-----CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 4 3667788888888665 789999999997743 346788887765 45888888
Q ss_pred cCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHH-
Q 008664 252 TTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALN- 328 (558)
Q Consensus 252 tt~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~- 328 (558)
| |....++++++|||. -|.|.-++.+++..+++..++. -.+.++.. +++++..+.| +-|.+..
T Consensus 261 T--N~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-----------~Plpv~~~-~~~~~~~t~g~SgRdikek 326 (368)
T COG1223 261 T--NRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-----------FPLPVDAD-LRYLAAKTKGMSGRDIKEK 326 (368)
T ss_pred c--CChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh-----------CCCccccC-HHHHHHHhCCCCchhHHHH
Confidence 8 555689999999995 8999999999999999999987 55666655 7888888666 4444433
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.|..+...+-.+ + ...|+.+|++.++.+
T Consensus 327 vlK~aLh~Ai~e-------------d-------~e~v~~edie~al~k 354 (368)
T COG1223 327 VLKTALHRAIAE-------------D-------REKVEREDIEKALKK 354 (368)
T ss_pred HHHHHHHHHHHh-------------c-------hhhhhHHHHHHHHHh
Confidence 444444433321 2 457999999999885
No 60
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.7e-21 Score=212.83 Aligned_cols=209 Identities=19% Similarity=0.313 Sum_probs=155.3
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-----CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE-Ee
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-----PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC-LS 192 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-----~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~-l~ 192 (558)
....||+++|||++++|++||++.+ ..++.|+..... ..++|+||||+||||+++++++.++ ..+++ .+
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki---~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~--~~~~Ew~n 143 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKI---EEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG--IQVQEWSN 143 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHH---HHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh--hHHHHHhh
Confidence 4557999999999999999999998 889999887544 2399999999999999999999987 33222 11
Q ss_pred ----------------------cccccHHHHHHHHHHHHHhhh-----hcCCceEEEEeCC----ccCCHHHHHHHH-hh
Q 008664 193 ----------------------AVTSGVKDVRDAVEDARKLRV-----KSNKRTVLFVDEV----HRFNKSQQDSFL-PV 240 (558)
Q Consensus 193 ----------------------~~~~~~~~i~~~~~~~~~~~~-----~~~~~~il~IDEi----d~l~~~~~~~Ll-~~ 240 (558)
......+.++.++..+..... ..++..||||||+ |+.+...++.|+ .+
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~ 223 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKY 223 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHh
Confidence 112244556666666542110 1246789999999 444455666666 57
Q ss_pred HhcCcEEEEeccCCCCC---------CC----CcHHhhc--ccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCccc
Q 008664 241 IEDGSIVFIGATTENPS---------FH----LITPLLS--RCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRV 305 (558)
Q Consensus 241 le~~~iilI~att~n~~---------~~----l~~aL~s--R~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~ 305 (558)
++.+.+.+|+++|+++. +. +.+++++ |+.+|.|+|++..++.+.|.+++....... +....
T Consensus 224 ~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~----~~~~~ 299 (637)
T TIGR00602 224 VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKN----GEKIK 299 (637)
T ss_pred hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcc----ccccc
Confidence 77888889999987764 22 4478988 456799999999999999999998732221 11112
Q ss_pred ccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 306 EVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 306 ~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
..+++++..|+..+.||+|.|++.||.++..
T Consensus 300 ~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 300 VPKKTSVELLCQGCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cCCHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 2367899999999999999999999998754
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.86 E-value=2.1e-21 Score=221.01 Aligned_cols=207 Identities=18% Similarity=0.250 Sum_probs=168.3
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEE
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVC 190 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~ 190 (558)
....+|+++.||..+++++||++.+ ..+...+.++..++++|+||||||||++++.+|+.+. .+..++.
T Consensus 172 ~~~~~L~~~~r~~~ld~~iGr~~ei---~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 172 QYTTDLTAQAREGKIDPVLGRDDEI---RQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred HHhhhHHHHhcCCCCCcccCCHHHH---HHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 3456899999999999999999988 8888888888889999999999999999999999873 1234444
Q ss_pred Eecc--c---c----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----HHH---HHHHhhHhcCcEEEEeccC
Q 008664 191 LSAV--T---S----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----SQQ---DSFLPVIEDGSIVFIGATT 253 (558)
Q Consensus 191 l~~~--~---~----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----~~~---~~Ll~~le~~~iilI~att 253 (558)
++.. . . -...++.+++++... +.+.||||||||.+.+ .++ +.|++.+++|.+.+||+||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~----~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT 324 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKAS----PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATT 324 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhc----CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecC
Confidence 4322 1 1 124667777776432 3678999999999964 233 4799999999999999999
Q ss_pred C---CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHH
Q 008664 254 E---NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DAR 324 (558)
Q Consensus 254 ~---n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R 324 (558)
. ++++.++++|.|||++|.+++|+.++...||+.....++.+ .++.++++++..+++.+.+ -+.
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~-------~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKH-------HGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhc-------CCCeeCHHHHHHHHHHcccccccccCcc
Confidence 8 56678999999999999999999999999997776664443 5789999999999999765 578
Q ss_pred HHHHHHHHHHHHhcc
Q 008664 325 VALNALEISAITAAV 339 (558)
Q Consensus 325 ~~~~~Le~a~~~a~~ 339 (558)
.++.+|+.++.....
T Consensus 398 KAIdlldea~a~~~~ 412 (852)
T TIGR03345 398 KAVSLLDTACARVAL 412 (852)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876543
No 62
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.86 E-value=5.7e-20 Score=192.75 Aligned_cols=291 Identities=18% Similarity=0.234 Sum_probs=201.5
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHc----CCCCeEEEEcCCCchHHHHHHHHHHHhCC-------CceEEE
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS----NRLPSIIFWGPPGTGKTTLAKAIVNSVAV-------SYKFVC 190 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~----~~~~~~LL~GppGtGKTtLa~~la~~l~~-------~~~~i~ 190 (558)
..|...|.|. +++|++..+ +.+..++.. ...++++|+||||||||++++.+++.+.. ...++.
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~---~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~ 79 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQI---EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVY 79 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHH---HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3566777775 578999887 777777653 45578999999999999999999987641 156788
Q ss_pred Eeccccc--HHHHHHHHHHH---------------------HHhhhhcCCceEEEEeCCccCCHHHHH---HHHhh--Hh
Q 008664 191 LSAVTSG--VKDVRDAVEDA---------------------RKLRVKSNKRTVLFVDEVHRFNKSQQD---SFLPV--IE 242 (558)
Q Consensus 191 l~~~~~~--~~~i~~~~~~~---------------------~~~~~~~~~~~il~IDEid~l~~~~~~---~Ll~~--le 242 (558)
++|.... ..-+..+.... .......++..||+|||+|.+....++ .|+.+ ..
T Consensus 80 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 80 VNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG 159 (365)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc
Confidence 8876532 11222222221 111112345679999999999543333 34433 11
Q ss_pred c---CcEEEEeccCCCCC-CCCcHHhhccc--ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHH
Q 008664 243 D---GSIVFIGATTENPS-FHLITPLLSRC--RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLC 316 (558)
Q Consensus 243 ~---~~iilI~att~n~~-~~l~~aL~sR~--~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La 316 (558)
+ ..+.+|++++.... ..+.+.+.+|| ..+.|+|++.+++.++++..+.. +.....+++++++.++
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~---------~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK---------AFYDGVLDDGVIPLCA 230 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh---------hccCCCCChhHHHHHH
Confidence 1 45777877743221 25778888898 47999999999999999998863 1123347888887766
Q ss_pred Hh---CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHH
Q 008664 317 SN---CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLIS 393 (558)
Q Consensus 317 ~~---s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~is 393 (558)
+. +.||+|.++++|+.+...+..+ + ...||.+++++++... ..+
T Consensus 231 ~~~~~~~Gd~R~al~~l~~a~~~a~~~-------------~-------~~~it~~~v~~a~~~~-------------~~~ 277 (365)
T TIGR02928 231 ALAAQEHGDARKAIDLLRVAGEIAERE-------------G-------AERVTEDHVEKAQEKI-------------EKD 277 (365)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHc-------------C-------CCCCCHHHHHHHHHHH-------------HHH
Confidence 54 6799999999999998776441 2 3579999999988753 246
Q ss_pred HHHHHhcCCCHHHH--HHHHHHHHhCCCChHHHHHHHhh---ccccccccCChHhHHHHHHHHHHHHHhCCchh
Q 008664 394 ALHKSMRGNDADAA--IYWLARMLEGGEQPLYIARRLVR---FASEDVGLADPLALNQAVSCYQACHFLGMPEC 462 (558)
Q Consensus 394 al~ks~rgsd~~aa--l~~l~~ll~~gedp~~I~rrl~~---~a~edigla~~~a~~~~~~~~~a~~~~G~pe~ 462 (558)
.+.+.+++.+.... ++++.++...+ +.....+++.. ..++++| ++|..-....+..+..+.+|+=|.
T Consensus 278 ~~~~~i~~l~~~~~~~l~ai~~~~~~~-~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 278 RLLELIRGLPTHSKLVLLAIANLAAND-EDPFRTGEVYEVYKEVCEDIG-VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 67888888887766 77777777654 33345555554 4567887 588888888888888888887553
No 63
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=4.1e-20 Score=190.63 Aligned_cols=188 Identities=20% Similarity=0.344 Sum_probs=149.2
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCC-------------------
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVS------------------- 185 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~------------------- 185 (558)
...+|..+++++||++++ ..+..++..++.+ .+||+||+|+|||++|+.+|+.+.+.
T Consensus 15 ~~~~P~~~~~l~Gh~~a~---~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~ 91 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAE---AFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPV 91 (351)
T ss_pred CCCCCCchhhccCcHHHH---HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHH
Confidence 346899999999999998 9999999999875 49999999999999999999998641
Q ss_pred ---------ceEEEEec----------ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--C
Q 008664 186 ---------YKFVCLSA----------VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--G 244 (558)
Q Consensus 186 ---------~~~i~l~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~ 244 (558)
..++.+.. ...++++++.+.+...... ..+...|+||||+|.|+...++.||+.+|+ .
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~-~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS-GDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc-ccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 01222321 1124677777666554432 456788999999999999999999999998 3
Q ss_pred cEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHH
Q 008664 245 SIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDAR 324 (558)
Q Consensus 245 ~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R 324 (558)
..++|..|+ ++ ..+.++++|||+.+.|.|++.+++..+|...... .+ ++++++..+++.++|++|
T Consensus 171 ~~~fiLit~-~~-~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-----------~~--~~~~~~~~i~~~s~G~pr 235 (351)
T PRK09112 171 RALFILISH-SS-GRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-----------QG--SDGEITEALLQRSKGSVR 235 (351)
T ss_pred CceEEEEEC-Ch-hhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-----------cC--CCHHHHHHHHHHcCCCHH
Confidence 445555442 33 4678999999999999999999999999974322 22 788999999999999999
Q ss_pred HHHHHHHH
Q 008664 325 VALNALEI 332 (558)
Q Consensus 325 ~~~~~Le~ 332 (558)
.++++++.
T Consensus 236 ~Al~ll~~ 243 (351)
T PRK09112 236 KALLLLNY 243 (351)
T ss_pred HHHHHHhc
Confidence 99998864
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.86 E-value=2.5e-20 Score=205.92 Aligned_cols=230 Identities=30% Similarity=0.453 Sum_probs=172.4
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~ 192 (558)
..++.+.+||.+|++++||++.+ ..+...+......+++|+|||||||||+|+.+++... .+..|+.++
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~---~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAI---KALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 35788999999999999999998 6777777777778999999999999999999988763 235788888
Q ss_pred ccccc--HHHHHH-H--------HHHHHHh------------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc----
Q 008664 193 AVTSG--VKDVRD-A--------VEDARKL------------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS---- 245 (558)
Q Consensus 193 ~~~~~--~~~i~~-~--------~~~~~~~------------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~---- 245 (558)
+.... ...+.. + ...+... ......+++|||||++.|+...|+.|+.+|+++.
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~ 297 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS 297 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee
Confidence 76532 111110 0 0111100 0011246799999999999999999999997643
Q ss_pred --------------------------EEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccc
Q 008664 246 --------------------------IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299 (558)
Q Consensus 246 --------------------------iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~ 299 (558)
+++|++||.++. .++++|++||..+.|.|++.+++..++++.+.+
T Consensus 298 ~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~-------- 368 (615)
T TIGR02903 298 SSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK-------- 368 (615)
T ss_pred cceeccCCcccchhhhhhcccCccceEEEEEecccccc-ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH--------
Confidence 578888877664 789999999999999999999999999998876
Q ss_pred cCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 300 ~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
.++.+++++++.|++++. +.|.++|.|+.+......... ......+ ...|+.++++++++...
T Consensus 369 ---~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~-----~~~~~~~-------~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 369 ---INVHLAAGVEELIARYTI-EGRKAVNILADVYGYALYRAA-----EAGKEND-------KVTITQDDVYEVIQISR 431 (615)
T ss_pred ---cCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHH-----HhccCCC-------CeeECHHHHHHHhCCCc
Confidence 566789999999999854 679999999888655321000 0000001 35799999999999754
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.85 E-value=1.8e-20 Score=183.91 Aligned_cols=198 Identities=19% Similarity=0.278 Sum_probs=141.6
Q ss_pred CCCccc-c-ccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccccHHHHHHHHH
Q 008664 132 NINDVV-G-QDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTSGVKDVRDAVE 206 (558)
Q Consensus 132 ~~~dvi-G-q~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~~~~~i~~~~~ 206 (558)
+|++++ | +..++ ..+.++......++++||||||||||+|++++++.+.. ...++.++..... ..++++
T Consensus 20 ~fd~f~~~~n~~a~---~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~---~~~~~~ 93 (235)
T PRK08084 20 TFASFYPGDNDSLL---AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF---VPEVLE 93 (235)
T ss_pred CccccccCccHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh---hHHHHH
Confidence 677777 4 33333 67777766666689999999999999999999987641 1233333321111 112222
Q ss_pred HHHHhhhhcCCceEEEEeCCccCCHH--HH----HHHHhhHhcCcEEEEeccCCCCCCC---CcHHhhccc---ceeecc
Q 008664 207 DARKLRVKSNKRTVLFVDEVHRFNKS--QQ----DSFLPVIEDGSIVFIGATTENPSFH---LITPLLSRC---RVLTLN 274 (558)
Q Consensus 207 ~~~~~~~~~~~~~il~IDEid~l~~~--~~----~~Ll~~le~~~iilI~att~n~~~~---l~~aL~sR~---~~i~~~ 274 (558)
.. ....+|+|||+|.+... .+ +.+...++.++..+|++++ +++.. +.+.|+||| .++.+.
T Consensus 94 ~~-------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~-~~p~~l~~~~~~L~SRl~~g~~~~l~ 165 (235)
T PRK08084 94 GM-------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD-RPPRQLNLGLPDLASRLDWGQIYKLQ 165 (235)
T ss_pred Hh-------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC-CChHHcCcccHHHHHHHhCCceeeec
Confidence 21 13469999999998643 33 3444455666666666665 44434 579999999 799999
Q ss_pred CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcccc
Q 008664 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354 (558)
Q Consensus 275 ~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~ 354 (558)
+++.+++..+|++.+.. .++.++++++++|++.++||+|.++++|+.+...+.. .
T Consensus 166 ~~~~~~~~~~l~~~a~~-----------~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~--------------~ 220 (235)
T PRK08084 166 PLSDEEKLQALQLRARL-----------RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASIT--------------A 220 (235)
T ss_pred CCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--------------c
Confidence 99999999999887766 6789999999999999999999999999997534322 1
Q ss_pred CCCCCCCccccCHHHHHHHHh
Q 008664 355 SDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 355 ~~~~~~~~~~It~e~v~~~l~ 375 (558)
+..||.+.+++++.
T Consensus 221 -------~~~it~~~~k~~l~ 234 (235)
T PRK08084 221 -------QRKLTIPFVKEILK 234 (235)
T ss_pred -------CCCCCHHHHHHHHc
Confidence 24699999999874
No 66
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.7e-20 Score=184.11 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=164.1
Q ss_pred CCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
-.+++||-|-+..+ +.++..++.. .+.++|||||||||||.||+++|++.+ ..|+.+.++..
T Consensus 147 dvtY~dIGGL~~Qi---~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtFIrvvgSEl 221 (406)
T COG1222 147 DVTYEDIGGLDEQI---QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATFIRVVGSEL 221 (406)
T ss_pred CCChhhccCHHHHH---HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceEEEeccHHH
Confidence 35889999999888 8888888764 247899999999999999999999999 99999988654
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcEEEEec
Q 008664 197 -------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSIVFIGA 251 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~iilI~a 251 (558)
|..-+|++|.-++.. .++||||||||.+. .+.|..++++|.+ +.+-+|+|
T Consensus 222 VqKYiGEGaRlVRelF~lArek-----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREK-----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhc-----CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 677789999888664 78999999999773 3577777777754 78999999
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh-HHHHHHHHhCCC-CHHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH-DAIEFLCSNCDG-DARVA 326 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~-~al~~La~~s~G-d~R~~ 326 (558)
| |..+-++|+|++ |+ +.|.|+.|+.+....|++-...+. .+.+ -.++.|++.+.| +--++
T Consensus 297 T--NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-------------~l~~dvd~e~la~~~~g~sGAdl 361 (406)
T COG1222 297 T--NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-------------NLADDVDLELLARLTEGFSGADL 361 (406)
T ss_pred c--CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-------------cCccCcCHHHHHHhcCCCchHHH
Confidence 9 788899999999 55 689999999999999999877652 2222 236778888666 55566
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccc
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAY 381 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~ 381 (558)
.+++..|-.++-.+ . ...||.+|+.++..+.....
T Consensus 362 kaictEAGm~AiR~-------------~-------R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 362 KAICTEAGMFAIRE-------------R-------RDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHHHhHHHHHh-------------c-------cCeecHHHHHHHHHHHHhcc
Confidence 67777777666431 2 56899999999988754333
No 67
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=1.4e-20 Score=196.68 Aligned_cols=178 Identities=21% Similarity=0.385 Sum_probs=143.5
Q ss_pred CCCccccccccCCchHHHHHHHHcCC----------CCeEEEEcCCCchHHHHHHHHHHHhCCCc---------------
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNR----------LPSIIFWGPPGTGKTTLAKAIVNSVAVSY--------------- 186 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~----------~~~~LL~GppGtGKTtLa~~la~~l~~~~--------------- 186 (558)
.|++|+||++++ +.|++++..++ .+++||+||||+|||++|+.+|+.+.|..
T Consensus 3 ~f~~IiGq~~~~---~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVV---AELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHH---HHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 578999999998 99999999875 46799999999999999999999886431
Q ss_pred ------e--EEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCC
Q 008664 187 ------K--FVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENP 256 (558)
Q Consensus 187 ------~--~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~ 256 (558)
. ++.......++++++++++.+...+ ..+++.|+||||+|+|+...++.||+.||+ ...++|.+|+ +
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p-~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~-~- 156 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRP-STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP-S- 156 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCc-ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC-C-
Confidence 1 2323334567889999998876543 456788999999999999999999999998 2344444443 3
Q ss_pred CCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 257 SFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 257 ~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
...+.++++|||+.+.|++++.+++..+|... . .++++.+..++..++|+++.++.+++
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~--------------~--~~~~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR--------------D--GVDPETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHh--------------c--CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 35889999999999999999999998888731 1 25678889999999999998877753
No 68
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.85 E-value=1e-19 Score=193.38 Aligned_cols=202 Identities=19% Similarity=0.311 Sum_probs=165.1
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCC----------------------------------CCeEEEEcC
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR----------------------------------LPSIIFWGP 166 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~----------------------------------~~~~LL~Gp 166 (558)
...|+++|+|+.|.|++|.+..- +.+..|++.+. ...+||+||
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tN---R~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gp 334 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTN---RRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGP 334 (877)
T ss_pred cceeecccChhHHHHHhcchhHH---HHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecC
Confidence 44899999999999999998875 78888887531 156999999
Q ss_pred CCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHhhhh---cCCceEEEEeCCccCCHHHHHHHHhhHh
Q 008664 167 PGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVK---SNKRTVLFVDEVHRFNKSQQDSFLPVIE 242 (558)
Q Consensus 167 pGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~~~~---~~~~~il~IDEid~l~~~~~~~Ll~~le 242 (558)
||.||||||++||++.| +.++++|+++. +...+++.+..+...... .+++.+|+|||||.-.+...+.++.+++
T Consensus 335 pGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 335 PGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 99999999999999999 99999999987 556677777777554323 3688999999999999999999999996
Q ss_pred c------Cc-----------------EEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccc
Q 008664 243 D------GS-----------------IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299 (558)
Q Consensus 243 ~------~~-----------------iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~ 299 (558)
. |. ..+||.++ |.+..-...|+--+.++.|.|++..-+.+.|+.+|.+
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN-dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r-------- 483 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN-DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR-------- 483 (877)
T ss_pred hhcchhhcCcccchhhhhhhccccccCCEEEEec-CccchhhhhcccceEEEEecCCChhHHHHHHHHHHhh--------
Confidence 2 10 23555553 3332223344445689999999999999999999988
Q ss_pred cCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc
Q 008664 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339 (558)
Q Consensus 300 ~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
+++.++..++..|++++.+|+|.++|.||.+......
T Consensus 484 ---E~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 484 ---ENMRADSKALNALCELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred ---hcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999876543
No 69
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=1.9e-19 Score=184.66 Aligned_cols=178 Identities=20% Similarity=0.394 Sum_probs=144.4
Q ss_pred CCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC------ceEEEEec---ccccHHHH
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS------YKFVCLSA---VTSGVKDV 201 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~------~~~i~l~~---~~~~~~~i 201 (558)
+|++++||++.+ +.+.+++..++. +.+||+||+|+|||++|+.+++.+.|. .++..+.. ...+.+++
T Consensus 2 ~~~~i~g~~~~~---~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 2 SFHTIIGHENIK---NRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred ChhhccCcHHHH---HHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 588999999998 999999999887 456999999999999999999987532 24445543 34477889
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHH
Q 008664 202 RDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPH 279 (558)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~ 279 (558)
+++.+.+...+ ..+.+.|+|||++|.|+...++.||+++|+ ...++|..| +++ ..+.++++|||+++.|.+++.+
T Consensus 79 r~~~~~~~~~p-~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~-~~~-~~ll~TI~SRc~~~~~~~~~~~ 155 (313)
T PRK05564 79 RNIIEEVNKKP-YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLC-ENL-EQILDTIKSRCQIYKLNRLSKE 155 (313)
T ss_pred HHHHHHHhcCc-ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEe-CCh-HhCcHHHHhhceeeeCCCcCHH
Confidence 99888765543 567889999999999999999999999999 345555555 344 4899999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 280 DVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 280 ~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
++..++..... .+++++++.++.+++|++..+...+
T Consensus 156 ~~~~~l~~~~~---------------~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 156 EIEKFISYKYN---------------DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred HHHHHHHHHhc---------------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99988876431 3677888899999999988776554
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=99.84 E-value=7.6e-20 Score=178.89 Aligned_cols=204 Identities=19% Similarity=0.284 Sum_probs=140.2
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHHHH
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRDAV 205 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~~~ 205 (558)
++.+|++++|+++.... ..+.+.......+.++||||||||||+|++++++++. ....|+.++...... ..++
T Consensus 11 ~~~~fd~f~~~~~~~~~-~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~---~~~~ 86 (229)
T PRK06893 11 DDETLDNFYADNNLLLL-DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS---PAVL 86 (229)
T ss_pred CcccccccccCChHHHH-HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh---HHHH
Confidence 35689999988765321 2222222333336689999999999999999999863 224444443211111 1222
Q ss_pred HHHHHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHhc----CcEE-EEeccCCCCCC-CCcHHhhcccc---eeecc
Q 008664 206 EDARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIED----GSIV-FIGATTENPSF-HLITPLLSRCR---VLTLN 274 (558)
Q Consensus 206 ~~~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le~----~~ii-lI~att~n~~~-~l~~aL~sR~~---~i~~~ 274 (558)
+. ..+..+|+|||++.+.. ..+..|+.+++. +..+ ++.+++..... ...+.|.||+. ++.++
T Consensus 87 ~~-------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~ 159 (229)
T PRK06893 87 EN-------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN 159 (229)
T ss_pred hh-------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC
Confidence 21 22557999999998753 334456666543 4444 34333322222 24489999985 89999
Q ss_pred CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcccc
Q 008664 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354 (558)
Q Consensus 275 ~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~ 354 (558)
+|+.+++..++++.+.. .++.++++++++|++.++||+|.+++.|+.+...+.. .
T Consensus 160 ~pd~e~~~~iL~~~a~~-----------~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~--------------~ 214 (229)
T PRK06893 160 DLTDEQKIIVLQRNAYQ-----------RGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQ--------------A 214 (229)
T ss_pred CCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh--------------c
Confidence 99999999999998877 7899999999999999999999999999988543222 1
Q ss_pred CCCCCCCccccCHHHHHHHHh
Q 008664 355 SDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 355 ~~~~~~~~~~It~e~v~~~l~ 375 (558)
+..||.+.+++++.
T Consensus 215 -------~~~it~~~v~~~L~ 228 (229)
T PRK06893 215 -------QRKLTIPFVKEILG 228 (229)
T ss_pred -------CCCCCHHHHHHHhc
Confidence 24699999999874
No 71
>PRK06620 hypothetical protein; Validated
Probab=99.84 E-value=9.4e-20 Score=175.86 Aligned_cols=191 Identities=17% Similarity=0.258 Sum_probs=138.3
Q ss_pred CCCccc-cccccCCchHHHHHHHHcCC--C--CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHH
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCSNR--L--PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVE 206 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~~~--~--~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~ 206 (558)
+|++++ |..+.. ....+..+..... . ++++||||||+|||||++++++..+ ..++. ..... .
T Consensus 14 tfd~Fvvg~~N~~-a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~--~~~~~----~---- 80 (214)
T PRK06620 14 HPDEFIVSSSNDQ-AYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN--AYIIK--DIFFN----E---- 80 (214)
T ss_pred CchhhEecccHHH-HHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC--CEEcc--hhhhc----h----
Confidence 455554 442321 1255666654321 1 5699999999999999999998876 43322 11000 0
Q ss_pred HHHHhhhhcCCceEEEEeCCccCCHHH-HHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccc---eeeccCCCHHHHH
Q 008664 207 DARKLRVKSNKRTVLFVDEVHRFNKSQ-QDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCR---VLTLNPLKPHDVE 282 (558)
Q Consensus 207 ~~~~~~~~~~~~~il~IDEid~l~~~~-~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~---~i~~~~l~~~~i~ 282 (558)
. ......+|+|||||.+.... ...+..+.+.|..++|++++.++...+ ++|+||+. ++.+.+++.+++.
T Consensus 81 ~------~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 81 E------ILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred h------HHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 0 11245799999999774322 222222336788899999988887777 99999996 9999999999999
Q ss_pred HHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCc
Q 008664 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362 (558)
Q Consensus 283 ~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (558)
.++++.+.. .++.++++++++|++.+.||+|.+++.|+.+...+... +
T Consensus 154 ~~l~k~~~~-----------~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~---------------------~ 201 (214)
T PRK06620 154 ILIFKHFSI-----------SSVTISRQIIDFLLVNLPREYSKIIEILENINYFALIS---------------------K 201 (214)
T ss_pred HHHHHHHHH-----------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHc---------------------C
Confidence 999998877 67889999999999999999999999999976543321 3
Q ss_pred cccCHHHHHHHH
Q 008664 363 ALVTLDDAKEAF 374 (558)
Q Consensus 363 ~~It~e~v~~~l 374 (558)
..||.+.+++++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 469999999876
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.84 E-value=1.4e-19 Score=177.05 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=150.7
Q ss_pred cCCCCCCcccccc--ccCCchHHHHHHHHc-CCCCeEEEEcCCCchHHHHHHHHHHHh-CCCceEEEEecccccHHHHHH
Q 008664 128 MRPVNINDVVGQD--HLLSPNSLLRSAVCS-NRLPSIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVCLSAVTSGVKDVRD 203 (558)
Q Consensus 128 ~rp~~~~dviGq~--~~i~~~~~l~~~i~~-~~~~~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~l~~~~~~~~~i~~ 203 (558)
-+|.+|+++++.. ..+ ..++.+... ....+++|+||+|||||+||+++++.. .....++.+++.....
T Consensus 12 ~~~~~~d~f~~~~~~~~~---~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~----- 83 (227)
T PRK08903 12 PPPPTFDNFVAGENAELV---ARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL----- 83 (227)
T ss_pred CChhhhcccccCCcHHHH---HHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-----
Confidence 3466889988443 333 566666553 234789999999999999999999986 2235666666543221
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc----CcEEEEeccCCCC-CCCCcHHhhccc---ceeeccC
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED----GSIVFIGATTENP-SFHLITPLLSRC---RVLTLNP 275 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~----~~iilI~att~n~-~~~l~~aL~sR~---~~i~~~~ 275 (558)
.+ . ......+|+|||+|.++...+..|+.+++. +..++|++++..+ ...+.+.|.||+ ..+.++|
T Consensus 84 ~~---~----~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 84 AF---D----FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred HH---h----hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 11 1 123567999999999999999999888854 4444555554433 334668899886 6899999
Q ss_pred CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccC
Q 008664 276 LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355 (558)
Q Consensus 276 l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~ 355 (558)
++.++...++...+.. .++.++++++++|++.|+||+|++.++|+.+...+.. .
T Consensus 157 l~~~~~~~~l~~~~~~-----------~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~--------------~- 210 (227)
T PRK08903 157 LSDADKIAALKAAAAE-----------RGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLE--------------Q- 210 (227)
T ss_pred CCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--------------h-
Confidence 9999888888887766 6899999999999999999999999999998766543 1
Q ss_pred CCCCCCccccCHHHHHHHHhh
Q 008664 356 DGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 356 ~~~~~~~~~It~e~v~~~l~~ 376 (558)
+..||...++++++.
T Consensus 211 ------~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 211 ------KRPVTLPLLREMLAQ 225 (227)
T ss_pred ------CCCCCHHHHHHHHhc
Confidence 457999999999864
No 73
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=5.1e-20 Score=183.93 Aligned_cols=188 Identities=22% Similarity=0.257 Sum_probs=137.6
Q ss_pred CCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEecc
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAV 194 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~ 194 (558)
.+++++|.+.++.....+..++.. +...+++|+||||||||++|+++|+.+. ....++.+++.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 356789998887444444444421 1236899999999999999999999763 22356666654
Q ss_pred ccc-------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC--------HHHHHHHHhhHhc--CcEEEEeccCC---
Q 008664 195 TSG-------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN--------KSQQDSFLPVIED--GSIVFIGATTE--- 254 (558)
Q Consensus 195 ~~~-------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~--------~~~~~~Ll~~le~--~~iilI~att~--- 254 (558)
+.. ...++++++.+ .++||||||+|.|. .+.++.|++.|++ +.+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a--------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA--------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc--------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 331 22233333322 45799999999975 4578889999987 44566665533
Q ss_pred CCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh----------CCCCH
Q 008664 255 NPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN----------CDGDA 323 (558)
Q Consensus 255 n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~----------s~Gd~ 323 (558)
++...++++|.+|| ..+.|++++.+++..++++.+.. .+..++++++.+|++. +.||+
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-----------~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~ 224 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-----------REYKLTEEAKWKLREHLYKVDQLSSREFSNA 224 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-----------cCCccCHHHHHHHHHHHHHHHhccCCCCchH
Confidence 23346789999999 57999999999999999999977 6678999999988643 47999
Q ss_pred HHHHHHHHHHHHHhc
Q 008664 324 RVALNALEISAITAA 338 (558)
Q Consensus 324 R~~~~~Le~a~~~a~ 338 (558)
|.+.|+++.+.....
T Consensus 225 R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 225 RYVRNIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 74
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-19 Score=191.16 Aligned_cols=210 Identities=23% Similarity=0.348 Sum_probs=165.2
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+...+++|+-|++++. ..++..+... .+..+|||||||||||++|+++|++.+ ..|+.+.
T Consensus 426 ve~p~v~W~dIGGlE~lK---~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nFlsvk 500 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELK---RELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNFLSVK 500 (693)
T ss_pred ccCCCCChhhccCHHHHH---HHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCeeecc
Confidence 345566899999999887 7777666542 347899999999999999999999999 8898886
Q ss_pred c-------ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH-----------HHHHHHhhHhc----CcEEEEe
Q 008664 193 A-------VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-----------QQDSFLPVIED----GSIVFIG 250 (558)
Q Consensus 193 ~-------~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-----------~~~~Ll~~le~----~~iilI~ 250 (558)
+ ...++..++++|..++.. .++|||+||||.+.+. ..+.||.-|+. .++.+|+
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~-----aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQV-----APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhc-----CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 5 344788899999999876 6799999999988553 35566666655 5788888
Q ss_pred ccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCC-CHHH
Q 008664 251 ATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDG-DARV 325 (558)
Q Consensus 251 att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~G-d~R~ 325 (558)
+| |....++++|++ |+ +++++++++.+...+|++..+++ ..++++ .++.|++.+.| +-..
T Consensus 576 AT--NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-------------mp~~~~vdl~~La~~T~g~SGAe 640 (693)
T KOG0730|consen 576 AT--NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-------------MPFSEDVDLEELAQATEGYSGAE 640 (693)
T ss_pred cc--CChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-------------CCCCccccHHHHHHHhccCChHH
Confidence 88 777899999999 77 68999999999999999988754 344444 58889998666 6777
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
+.++++.|+..+-.+. ..-..|+.+++.++++...
T Consensus 641 l~~lCq~A~~~a~~e~------------------i~a~~i~~~hf~~al~~~r 675 (693)
T KOG0730|consen 641 IVAVCQEAALLALRES------------------IEATEITWQHFEEALKAVR 675 (693)
T ss_pred HHHHHHHHHHHHHHHh------------------cccccccHHHHHHHHHhhc
Confidence 8888888887765410 0034699999999988654
No 75
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=2.3e-19 Score=185.98 Aligned_cols=184 Identities=26% Similarity=0.347 Sum_probs=145.6
Q ss_pred cCCCCCCccccccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCCc--------------------
Q 008664 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVSY-------------------- 186 (558)
Q Consensus 128 ~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~~-------------------- 186 (558)
.+|+++++|+||++++ +.|.+++..+++++ +||+||+|+||+++|..+|+.+.|..
T Consensus 13 ~~P~~~~~iiGq~~~~---~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c 89 (365)
T PRK07471 13 PHPRETTALFGHAAAE---AALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH 89 (365)
T ss_pred CCCCchhhccChHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC
Confidence 6899999999999998 99999999998865 99999999999999999999885321
Q ss_pred ------------eEEEEec----------ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-
Q 008664 187 ------------KFVCLSA----------VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED- 243 (558)
Q Consensus 187 ------------~~i~l~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~- 243 (558)
+++.+.. ...+++++|++........ ..+.+.|+||||+|.++...++.||+.+|+
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA-AEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc-ccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 2222321 1124677887776654332 446788999999999999999999999999
Q ss_pred -CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCC
Q 008664 244 -GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD 322 (558)
Q Consensus 244 -~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd 322 (558)
...+||.+| .++. .+.+.++|||+.+.|.+++.+++..+|.... ...+++.+..+++.++|+
T Consensus 169 p~~~~~IL~t-~~~~-~llpti~SRc~~i~l~~l~~~~i~~~L~~~~---------------~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 169 PARSLFLLVS-HAPA-RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG---------------PDLPDDPRAALAALAEGS 231 (365)
T ss_pred CCCeEEEEEE-CCch-hchHHhhccceEEECCCCCHHHHHHHHHHhc---------------ccCCHHHHHHHHHHcCCC
Confidence 345555544 2443 6789999999999999999999999987642 223455568899999999
Q ss_pred HHHHHHHHHH
Q 008664 323 ARVALNALEI 332 (558)
Q Consensus 323 ~R~~~~~Le~ 332 (558)
++.++++++.
T Consensus 232 p~~Al~ll~~ 241 (365)
T PRK07471 232 VGRALRLAGG 241 (365)
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 76
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.81 E-value=5.6e-19 Score=172.56 Aligned_cols=201 Identities=16% Similarity=0.262 Sum_probs=146.0
Q ss_pred CCCCCcccc--ccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHH
Q 008664 130 PVNINDVVG--QDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVE 206 (558)
Q Consensus 130 p~~~~dviG--q~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~ 206 (558)
+.+|+++++ +...+ ..+++++......+++|+||+|||||++|+.+++.+. ....++.+++...... ...++.
T Consensus 11 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 86 (226)
T TIGR03420 11 DPTFDNFYAGGNAELL---AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA-DPEVLE 86 (226)
T ss_pred chhhcCcCcCCcHHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh-HHHHHh
Confidence 457888874 33344 7788877666678999999999999999999999874 2246667776544321 112222
Q ss_pred HHHHhhhhcCCceEEEEeCCccCCHHH--HHHHHhhHhc----CcEEEEeccCCCCC-CCCc-HHhhccc---ceeeccC
Q 008664 207 DARKLRVKSNKRTVLFVDEVHRFNKSQ--QDSFLPVIED----GSIVFIGATTENPS-FHLI-TPLLSRC---RVLTLNP 275 (558)
Q Consensus 207 ~~~~~~~~~~~~~il~IDEid~l~~~~--~~~Ll~~le~----~~iilI~att~n~~-~~l~-~aL~sR~---~~i~~~~ 275 (558)
. .....+|+|||+|.+.... ++.|+.+++. +. .+|++++..+. ..+. +.|.+|+ ..+.++|
T Consensus 87 ~-------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~-~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~ 158 (226)
T TIGR03420 87 G-------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG-RLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158 (226)
T ss_pred h-------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC-eEEEECCCChHHCCcccHHHHHHHhcCeeEecCC
Confidence 1 1245699999999998643 7778777654 33 34444432221 2233 7888887 4899999
Q ss_pred CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccC
Q 008664 276 LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDES 355 (558)
Q Consensus 276 l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~ 355 (558)
++.+++..+++..+.+ .++.+++++++.|++.|+||+|.+.++|+.+...+.. +
T Consensus 159 l~~~e~~~~l~~~~~~-----------~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~--------------~- 212 (226)
T TIGR03420 159 LSDEEKIAALQSRAAR-----------RGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLA--------------A- 212 (226)
T ss_pred CCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--------------h-
Confidence 9999999999887765 6788999999999999999999999999998765543 1
Q ss_pred CCCCCCccccCHHHHHHHH
Q 008664 356 DGCSPYVALVTLDDAKEAF 374 (558)
Q Consensus 356 ~~~~~~~~~It~e~v~~~l 374 (558)
...||.+.+++++
T Consensus 213 ------~~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 ------KRKITIPFVKEVL 225 (226)
T ss_pred ------CCCCCHHHHHHHh
Confidence 3579999999876
No 77
>PRK08727 hypothetical protein; Validated
Probab=99.81 E-value=1.2e-18 Score=170.73 Aligned_cols=212 Identities=17% Similarity=0.249 Sum_probs=145.2
Q ss_pred CchhhcCC-CCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHH
Q 008664 123 PLSERMRP-VNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKD 200 (558)
Q Consensus 123 ~l~~~~rp-~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~ 200 (558)
+|.-.+++ .+|+++++..... ...+..+........++|+||+|||||+|+++++..+. .....+.++... ....
T Consensus 7 ~l~~~~~~~~~f~~f~~~~~n~--~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~-~~~~ 83 (233)
T PRK08727 7 PLALRYPSDQRFDSYIAAPDGL--LAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA-AAGR 83 (233)
T ss_pred cccCCCCCcCChhhccCCcHHH--HHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH-hhhh
Confidence 34333443 3788887654321 13333333333346799999999999999999987753 223444444321 1112
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCccCC--HHHHHHHHhhHhc---CcEEEEeccCCCCC--CCCcHHhhcc---cce
Q 008664 201 VRDAVEDARKLRVKSNKRTVLFVDEVHRFN--KSQQDSFLPVIED---GSIVFIGATTENPS--FHLITPLLSR---CRV 270 (558)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~il~IDEid~l~--~~~~~~Ll~~le~---~~iilI~att~n~~--~~l~~aL~sR---~~~ 270 (558)
+...++.. ....+|+|||+|.+. ...+..|+.+++. ....+|++++..|. ..+.++|.|| +.+
T Consensus 84 ~~~~~~~l-------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~ 156 (233)
T PRK08727 84 LRDALEAL-------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIR 156 (233)
T ss_pred HHHHHHHH-------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCce
Confidence 22222222 255799999999886 3455677777764 23334444443332 2357999999 679
Q ss_pred eeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhh
Q 008664 271 LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVE 350 (558)
Q Consensus 271 i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~ 350 (558)
+.|++++.+++..++++.+.. .++.++++++++|++.++||+|.++++|+.+...+...
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~-----------~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~---------- 215 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQR-----------RGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAA---------- 215 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 999999999999999998877 68899999999999999999999999999887543321
Q ss_pred ccccCCCCCCCccccCHHHHHHHHhh
Q 008664 351 QEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 351 ~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
+..||.+.++++++.
T Consensus 216 -----------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 -----------KRRVTVPFLRRVLEE 230 (233)
T ss_pred -----------CCCCCHHHHHHHHhh
Confidence 246999999999875
No 78
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.81 E-value=1.9e-19 Score=205.78 Aligned_cols=207 Identities=17% Similarity=0.269 Sum_probs=164.4
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC--------CceEE
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--------SYKFV 189 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~--------~~~~i 189 (558)
.....+++++.||..+++++|+++.+ ..+...+.+...++++|+||||||||++++.+|+.+.. +.+++
T Consensus 162 ~~~~~~l~~~~r~~~l~~vigr~~ei---~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 162 KKYTIDLTERAEQGKLDPVIGRDEEI---RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HHHhhhHHHHHhcCCCCcCCCCHHHH---HHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 33457899999999999999999988 88888888888899999999999999999999999831 35666
Q ss_pred EEeccc--cc-------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------HHHHHHHhhHhcCcEEEEecc
Q 008664 190 CLSAVT--SG-------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------SQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 190 ~l~~~~--~~-------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------~~~~~Ll~~le~~~iilI~at 252 (558)
.++... .+ ...++.++++... ...+.||||||+|.+.+ +.++.|++.+++|.+.+|++|
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~----~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaT 314 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGAT 314 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHH----cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcC
Confidence 654332 22 2245666665433 23678999999999964 368999999999999999999
Q ss_pred CCCCC---CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CH
Q 008664 253 TENPS---FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DA 323 (558)
Q Consensus 253 t~n~~---~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~ 323 (558)
|.+++ +.++++|.+||+.|.+..|+.++...+|+....+++.+ .++.++++++...+..+.+ -+
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~-------~~v~~~d~a~~~a~~ls~ry~~~~~~p 387 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH-------HHVQITDPAIVAAATLSHRYIADRQLP 387 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccC-------CCCCcCHHHHHHHHHHhhccccCCCCC
Confidence 99886 56899999999989999999999999998776654433 5788899988887666433 56
Q ss_pred HHHHHHHHHHHHHhc
Q 008664 324 RVALNALEISAITAA 338 (558)
Q Consensus 324 R~~~~~Le~a~~~a~ 338 (558)
..++.+++.++....
T Consensus 388 dkAi~LiD~aaa~~r 402 (857)
T PRK10865 388 DKAIDLIDEAASSIR 402 (857)
T ss_pred hHHHHHHHHHhcccc
Confidence 778888888776544
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.81 E-value=2.6e-19 Score=205.50 Aligned_cols=207 Identities=18% Similarity=0.289 Sum_probs=167.9
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEE
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVC 190 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~ 190 (558)
....+|++++||..+++++|+++.+ ..+...+.+...++++|+||||||||++++.+++.+. ...+++.
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei---~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEI---RRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHH---HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 3456899999999999999999988 8888888888889999999999999999999999873 1355665
Q ss_pred Eeccc--cc-------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------HHHHHHHhhHhcCcEEEEeccC
Q 008664 191 LSAVT--SG-------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------SQQDSFLPVIEDGSIVFIGATT 253 (558)
Q Consensus 191 l~~~~--~~-------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------~~~~~Ll~~le~~~iilI~att 253 (558)
++... .+ ...++.+++.+.. ...+.||||||||.+.. +..+.|++.++.|.+.+|++||
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~----~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTK----SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATT 310 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHh----cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCc
Confidence 54322 11 2245555555432 23578999999998863 4678899999999999999999
Q ss_pred CCCC---CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHH
Q 008664 254 ENPS---FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DAR 324 (558)
Q Consensus 254 ~n~~---~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R 324 (558)
.+++ +.+++++.+||+.+.+..|+.++...+|+....+++.+ .++.++++++..++..+.+ -+.
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~-------~~v~~~d~~i~~~~~ls~~yi~~r~lPd 383 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVH-------HGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccc-------cCCCCCHHHHHHHHHhccccccccCCch
Confidence 8876 56799999999999999999999999999887775544 6888999999999988654 389
Q ss_pred HHHHHHHHHHHHhcc
Q 008664 325 VALNALEISAITAAV 339 (558)
Q Consensus 325 ~~~~~Le~a~~~a~~ 339 (558)
.++.+|+.++.....
T Consensus 384 kAidlld~a~a~~~~ 398 (852)
T TIGR03346 384 KAIDLIDEAAARIRM 398 (852)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999986543
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=4e-19 Score=178.97 Aligned_cols=186 Identities=18% Similarity=0.241 Sum_probs=136.2
Q ss_pred ccccccccCCchHHHHHHHHc-------C-----CCCeEEEEcCCCchHHHHHHHHHHHhCC-----CceEEEEecccc-
Q 008664 135 DVVGQDHLLSPNSLLRSAVCS-------N-----RLPSIIFWGPPGTGKTTLAKAIVNSVAV-----SYKFVCLSAVTS- 196 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~-------~-----~~~~~LL~GppGtGKTtLa~~la~~l~~-----~~~~i~l~~~~~- 196 (558)
+++|.++++.....+..++.. + ...+++|+||||||||++|+++++.+.. ..+++.+++.+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 588888887333333333221 1 1137999999999999999999988741 235777775322
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC---------CHHHHHHHHhhHhc--CcEEEEeccCCCC---
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF---------NKSQQDSFLPVIED--GSIVFIGATTENP--- 256 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l---------~~~~~~~Ll~~le~--~~iilI~att~n~--- 256 (558)
....++.+++.+ .+++|||||+|.+ ....++.|++.|++ +.+++|++++.+.
T Consensus 103 ~~~~g~~~~~~~~~~~~a--------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred HhhcccchHHHHHHHHHc--------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 112222333322 4589999999977 35678899999987 4678888876542
Q ss_pred CCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh--------CCCCHHHHH
Q 008664 257 SFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN--------CDGDARVAL 327 (558)
Q Consensus 257 ~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~--------s~Gd~R~~~ 327 (558)
...++++|.+|| ..+.|++++.+++..++...+.+ ....+++++++.+..+ |.||+|.+.
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~-----------~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lr 243 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE-----------QQYRFSAEAEEAFADYIALRRTQPHFANARSIR 243 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH-----------hccccCHHHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 235689999999 58999999999999999999988 5567888888888764 889999999
Q ss_pred HHHHHHHHHhcc
Q 008664 328 NALEISAITAAV 339 (558)
Q Consensus 328 ~~Le~a~~~a~~ 339 (558)
|+++.++.....
T Consensus 244 n~ve~~~~~~~~ 255 (284)
T TIGR02880 244 NAIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999877543
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.80 E-value=1.2e-18 Score=165.36 Aligned_cols=160 Identities=27% Similarity=0.435 Sum_probs=130.4
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC------------------------ceEEEEecccccHHHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS------------------------YKFVCLSAVTSGVKDV 201 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~------------------------~~~i~l~~~~~~~~~i 201 (558)
..+.+.+..++. +.+||+||+|+|||++|+.+++.+.+. ..++..+....+.+.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 457788888887 569999999999999999999998632 2333334445578889
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHH
Q 008664 202 RDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPH 279 (558)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~ 279 (558)
+.+++.+...+ ..+.+.||||||+|.++...++.|+.+||+ ....+|++|+ ++ ..+.+++.+||+++.|.|++.+
T Consensus 82 ~~i~~~~~~~~-~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~-~~-~~l~~~i~sr~~~~~~~~~~~~ 158 (188)
T TIGR00678 82 RELVEFLSRTP-QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITP-SP-EKLLPTIRSRCQVLPFPPLSEE 158 (188)
T ss_pred HHHHHHHccCc-ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC-Ch-HhChHHHHhhcEEeeCCCCCHH
Confidence 98888876654 456789999999999999999999999998 3355666554 34 5889999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHH
Q 008664 280 DVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVA 326 (558)
Q Consensus 280 ~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~ 326 (558)
++.++|... + +++++++.|++.++||+|.+
T Consensus 159 ~~~~~l~~~---------------g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 159 ALLQWLIRQ---------------G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHc---------------C--CCHHHHHHHHHHcCCCcccC
Confidence 998888752 2 68899999999999999864
No 82
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.5e-19 Score=180.21 Aligned_cols=234 Identities=24% Similarity=0.314 Sum_probs=174.4
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..-.+++.-.+|+|+.|-+++..+.+.+...++... +..+||+||||||||.|||++|.+.+ .+|+..+
T Consensus 292 ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~--VPFF~~s 369 (752)
T KOG0734|consen 292 EVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG--VPFFYAS 369 (752)
T ss_pred ccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC--CCeEecc
Confidence 334456666789999999999855566666666532 37899999999999999999999999 9999888
Q ss_pred cccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEe
Q 008664 193 AVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIG 250 (558)
Q Consensus 193 ~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~ 250 (558)
.+.. |...+|++|..++.. .++||||||||.+.. ...+.||--|+. ..+++|+
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~-----APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKAR-----APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhc-----CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 7654 778899999998664 789999999997732 345677777765 4589999
Q ss_pred ccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC-hHHHHHHHHhCCC-CHHH
Q 008664 251 ATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN-HDAIEFLCSNCDG-DARV 325 (558)
Q Consensus 251 att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~-~~al~~La~~s~G-d~R~ 325 (558)
+| |....++++|.+ || ..+.++.|+..-..+||..++.+ +.++ +-....||+-+.| +--.
T Consensus 445 AT--Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k-------------i~~~~~VD~~iiARGT~GFsGAd 509 (752)
T KOG0734|consen 445 AT--NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK-------------IPLDEDVDPKIIARGTPGFSGAD 509 (752)
T ss_pred cc--CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc-------------CCcccCCCHhHhccCCCCCchHH
Confidence 99 777789999998 66 47889999999999999998865 2222 2235577887766 5667
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCC---cchHHHHHHHHH
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAG---EEHYNLISALHK 397 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~---~~~~d~isal~k 397 (558)
+.|++.+++..+..+ | ...+|..+++-+-.+..+.-.+.+ ++.-..+-|+|.
T Consensus 510 LaNlVNqAAlkAa~d-------------g-------a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE 564 (752)
T KOG0734|consen 510 LANLVNQAALKAAVD-------------G-------AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHE 564 (752)
T ss_pred HHHHHHHHHHHHHhc-------------C-------cccccHHHHhhhhhheeecccccccccChhhhhhhhhhc
Confidence 888888888887652 3 457888888877666543333222 223345555555
No 83
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.79 E-value=1.5e-17 Score=181.35 Aligned_cols=290 Identities=16% Similarity=0.184 Sum_probs=184.1
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc----CCCCe-EEEEcCCCchHHHHHHHHHHHhC--------CCceEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS----NRLPS-IIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVC 190 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~----~~~~~-~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~ 190 (558)
|...|.| +.|.|++..+ ..|..++.. ....+ ++|+|+||||||++++.+.+++. ..+.++.
T Consensus 748 L~~DYVP---D~LPhREeEI---eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY 821 (1164)
T PTZ00112 748 MQLDVVP---KYLPCREKEI---KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE 821 (1164)
T ss_pred cCcccCC---CcCCChHHHH---HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence 3444555 4577888887 555555543 33334 57999999999999999988773 1267889
Q ss_pred Eeccccc-HHH-HH------------------HHHHHHHHhh-hhcCCceEEEEeCCccCCHHHHHHHHhhHhc-----C
Q 008664 191 LSAVTSG-VKD-VR------------------DAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-----G 244 (558)
Q Consensus 191 l~~~~~~-~~~-i~------------------~~~~~~~~~~-~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-----~ 244 (558)
+||.... ... +. .+++...... .......||||||||.|....++.|+.+++. +
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~S 901 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINS 901 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCC
Confidence 9985421 111 11 1111111111 1122346999999999988788888877753 5
Q ss_pred cEEEEeccCC-CCCCCCcHHhhcccc--eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHH---h
Q 008664 245 SIVFIGATTE-NPSFHLITPLLSRCR--VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCS---N 318 (558)
Q Consensus 245 ~iilI~att~-n~~~~l~~aL~sR~~--~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~---~ 318 (558)
.+++||+++. +....+.+.+.+||. .+.|+|++.+++.+||...+.. ....+++++++++|+ .
T Consensus 902 KLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~-----------A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-----------CKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-----------CCCCCCHHHHHHHHHhhhh
Confidence 6888888853 223467788999985 5899999999999999999876 223589999999998 5
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Q 008664 319 CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKS 398 (558)
Q Consensus 319 s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks 398 (558)
..||+|.|+++|+.+...+. ...|+.++|++++.+.. -+.+...
T Consensus 971 ~SGDARKALDILRrAgEike-----------------------gskVT~eHVrkAleeiE-------------~srI~e~ 1014 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFENKR-----------------------GQKIVPRDITEATNQLF-------------DSPLTNA 1014 (1164)
T ss_pred cCCHHHHHHHHHHHHHhhcC-----------------------CCccCHHHHHHHHHHHH-------------hhhHHHH
Confidence 78999999999999987532 23799999999986431 1123444
Q ss_pred hcCCCHHHHHHH--HHHHHhC-CCCh---HHHHHHHhhcc---ccccccCChHhHHHHHHHHHHHHHhCC--chhhHHHH
Q 008664 399 MRGNDADAAIYW--LARMLEG-GEQP---LYIARRLVRFA---SEDVGLADPLALNQAVSCYQACHFLGM--PECNVILA 467 (558)
Q Consensus 399 ~rgsd~~aal~~--l~~ll~~-gedp---~~I~rrl~~~a---~edigla~~~a~~~~~~~~~a~~~~G~--pe~~~~l~ 467 (558)
+++.....-+.. +..++.. |..+ ..|..+...++ ...+|. +|.-= +..-...-..++|+ -|..|||.
T Consensus 1015 IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv-~plTq-RV~d~L~eL~~LGIIl~ep~~~~~ 1092 (1164)
T PTZ00112 1015 INYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM-CSNNE-LFKIMLDKLVKMGILLIRPYIPLE 1092 (1164)
T ss_pred HHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC-CCcHH-HHHHHHHHHHhcCeEEecCCCchh
Confidence 445554433333 3333344 3323 23444333333 223443 22222 33334455667775 56667665
Q ss_pred H
Q 008664 468 Q 468 (558)
Q Consensus 468 ~ 468 (558)
.
T Consensus 1093 ~ 1093 (1164)
T PTZ00112 1093 S 1093 (1164)
T ss_pred h
Confidence 4
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=7.9e-19 Score=176.77 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=133.3
Q ss_pred CccccccccCCchHHHHHHHHc-------C-----CCCeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEecccc
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCS-------N-----RLPSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAVTS 196 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~-------~-----~~~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~~~ 196 (558)
.+++|.+.++.....+..++.. + ...+++|+||||||||++|+++++.+. ...+++.+++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 3689998887322233222211 1 124699999999999999999999863 1235777775332
Q ss_pred c-------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccC---------CHHHHHHHHhhHhc--CcEEEEeccCCCC--
Q 008664 197 G-------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF---------NKSQQDSFLPVIED--GSIVFIGATTENP-- 256 (558)
Q Consensus 197 ~-------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l---------~~~~~~~Ll~~le~--~~iilI~att~n~-- 256 (558)
. ....+.+++. ..++||||||+|.+ ..+.++.|+..|++ +.+++|++++.+.
T Consensus 103 ~~~~~g~~~~~~~~~l~~--------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK--------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHhccchHHHHHHHHH--------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 1 1111222222 24679999999986 46688999999987 4578888875432
Q ss_pred -CCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh--------CCCCHHHH
Q 008664 257 -SFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN--------CDGDARVA 326 (558)
Q Consensus 257 -~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~--------s~Gd~R~~ 326 (558)
....+|+|.|||. .+.|++++.+++..|+...+.+ .+..+++++...+..+ +.||+|.+
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~-----------~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~v 243 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE-----------QQYQLTPEAEKALLDYIKKRMEQPLFANARSV 243 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH-----------hcCCCChhHHHHHHHHHHHhCCCCCCccHHHH
Confidence 2345799999995 8999999999999999999988 5666777776666653 56999999
Q ss_pred HHHHHHHHHHhcc
Q 008664 327 LNALEISAITAAV 339 (558)
Q Consensus 327 ~~~Le~a~~~a~~ 339 (558)
.++++.+......
T Consensus 244 rn~ve~~~~~~~~ 256 (287)
T CHL00181 244 RNALDRARMRQAN 256 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877543
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=99.79 E-value=4.6e-18 Score=166.72 Aligned_cols=212 Identities=14% Similarity=0.193 Sum_probs=146.3
Q ss_pred CchhhcCC-CCCCccccccccCCchHHHHHHHHc--C-CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccccc
Q 008664 123 PLSERMRP-VNINDVVGQDHLLSPNSLLRSAVCS--N-RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSG 197 (558)
Q Consensus 123 ~l~~~~rp-~~~~dviGq~~~i~~~~~l~~~i~~--~-~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~ 197 (558)
+|.-...| -+|++++...... ....+.++... + ..++++||||+|+|||+|++++++++. ....++.+++....
T Consensus 7 ~l~~~~~~~~tfdnF~~~~~~~-a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 7 PLGVRLRDDATFANYYPGANAA-ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred ccCCCCCCcccccccCcCChHH-HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 33334444 3788887332211 11223333222 1 136799999999999999999998753 22455555543221
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHh----cCcEEEEeccCCCCCCCC-cHHhhccc--
Q 008664 198 VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIE----DGSIVFIGATTENPSFHL-ITPLLSRC-- 268 (558)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le----~~~iilI~att~n~~~~l-~~aL~sR~-- 268 (558)
. ....+++.. ....+|+|||++.+.. ..+..|+.+++ .+..++|++++.++.... .+.|.||+
T Consensus 86 ~-~~~~~~~~~-------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~ 157 (234)
T PRK05642 86 D-RGPELLDNL-------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL 157 (234)
T ss_pred h-hhHHHHHhh-------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc
Confidence 1 111122111 2446999999998853 44566777775 477788887776665554 79999999
Q ss_pred -ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchh
Q 008664 269 -RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347 (558)
Q Consensus 269 -~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~ 347 (558)
.++.+.+++.++...+++..+.. .++.++++++++|++.++||+|.+.++|+.+...+..
T Consensus 158 gl~~~l~~~~~e~~~~il~~ka~~-----------~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~-------- 218 (234)
T PRK05642 158 ALVFQMRGLSDEDKLRALQLRASR-----------RGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQ-------- 218 (234)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--------
Confidence 78999999999999999976665 5688999999999999999999999999998754432
Q ss_pred hhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 348 EVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
. +..||...+++++.
T Consensus 219 ------~-------~~~it~~~~~~~L~ 233 (234)
T PRK05642 219 ------A-------QRKLTIPFLKETLG 233 (234)
T ss_pred ------c-------CCcCCHHHHHHHhc
Confidence 1 35699999999875
No 86
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.1e-19 Score=193.35 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=145.4
Q ss_pred CccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc-------
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS------- 196 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~------- 196 (558)
..|+||++++ ..+.++++..+ ..++||.||+|||||.||+++|..+. ....++.++.+..
T Consensus 491 ~rViGQd~AV---~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAV---EAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHH---HHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 4599999999 88888887744 26899999999999999999999996 3356677776554
Q ss_pred ----------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccC
Q 008664 197 ----------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATT 253 (558)
Q Consensus 197 ----------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att 253 (558)
|.++-..+.+..++ .+++||++|||++.+++.++.||++|++|+ .++|.+++
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr-----~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRR-----KPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhc-----CCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 33332333333333 378999999999999999999999999864 23444332
Q ss_pred C-------CC-------------------CCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccc
Q 008664 254 E-------NP-------------------SFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVE 306 (558)
Q Consensus 254 ~-------n~-------------------~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~ 306 (558)
- +. ...+.|+|++|+. +|.|.|++.+++..|+...+.+....+.+ .+..+.
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~--~~i~l~ 720 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAE--RGITLE 720 (786)
T ss_pred cchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHh--CCceEE
Confidence 1 00 0124578889996 99999999999999999999887776632 246778
Q ss_pred cChHHHHHHHHhC---CCCHHHHHHHHHHHHH
Q 008664 307 VNHDAIEFLCSNC---DGDARVALNALEISAI 335 (558)
Q Consensus 307 i~~~al~~La~~s---~Gd~R~~~~~Le~a~~ 335 (558)
+++++.++|++.+ ...+|-+.++++.-+.
T Consensus 721 ~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 721 LSDEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred ECHHHHHHHHHhccCCCcCchHHHHHHHHHHH
Confidence 9999999999983 4567888888876544
No 87
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=3.1e-18 Score=186.22 Aligned_cols=210 Identities=26% Similarity=0.352 Sum_probs=153.8
Q ss_pred CCCCCCccccccccCCchHHHHHHHH---c---------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVC---S---------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~---~---------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
...+|+|++|+++.+ ..+..++. . ..+.++||+||||||||++|+++|+.++ .+++.+++...
T Consensus 50 ~~~~~~di~g~~~~k---~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~ 124 (495)
T TIGR01241 50 PKVTFKDVAGIDEAK---EELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDF 124 (495)
T ss_pred CCCCHHHhCCHHHHH---HHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCeeeccHHHH
Confidence 345899999999887 44444443 1 2236899999999999999999999998 88888886542
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--------------HHHHHHhhHhc----CcEEEEec
Q 008664 197 -------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le~----~~iilI~a 251 (558)
+...++.+|..+... .++||||||||.+... ..+.|+..|+. ..+++|++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~-----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKN-----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhc-----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 455677888777543 6789999999987532 23456666643 45778887
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVAL 327 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~ 327 (558)
| |....+++++++ || ..+.++.|+.++..+|++..+.. ..+. ++..+..+++.+.| +.+.+.
T Consensus 200 T--n~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~-----------~~~~-~~~~l~~la~~t~G~sgadl~ 265 (495)
T TIGR01241 200 T--NRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN-----------KKLA-PDVDLKAVARRTPGFSGADLA 265 (495)
T ss_pred c--CChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc-----------CCCC-cchhHHHHHHhCCCCCHHHHH
Confidence 7 666799999998 66 57999999999999999988755 2221 33456788888776 667777
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcccccc
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYD 382 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d 382 (558)
++++.+...+..+ + ...||.+++++++.+....++
T Consensus 266 ~l~~eA~~~a~~~-------------~-------~~~i~~~~l~~a~~~~~~~~~ 300 (495)
T TIGR01241 266 NLLNEAALLAARK-------------N-------KTEITMNDIEEAIDRVIAGPE 300 (495)
T ss_pred HHHHHHHHHHHHc-------------C-------CCCCCHHHHHHHHHHHhcccc
Confidence 7777776544321 2 356999999999987654443
No 88
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.79 E-value=2.5e-18 Score=192.54 Aligned_cols=226 Identities=17% Similarity=0.267 Sum_probs=171.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~ 192 (558)
...|+++.+-..++.++|++..+ ..+...+.+...+++||+||||||||++|+.+++.+. .+..++.++
T Consensus 173 ~~~l~~~a~~g~~~~liGR~~ei---~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 173 TTNLNQLARVGGIDPLIGREKEL---ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred HHhHHHHHHcCCCCcCcCCCHHH---HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 44677888888999999999998 8888888888889999999999999999999998752 123344433
Q ss_pred ccc--cc-------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC---------HHHHHHHHhhHhcCcEEEEeccCC
Q 008664 193 AVT--SG-------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN---------KSQQDSFLPVIEDGSIVFIGATTE 254 (558)
Q Consensus 193 ~~~--~~-------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~---------~~~~~~Ll~~le~~~iilI~att~ 254 (558)
... .+ ...++.++..+.. ..+.||||||||.+. .+..+.|.++++.+.+.+|++||.
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~-----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHh-----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCCh
Confidence 211 11 2234455554432 256799999999872 234556888999999999999987
Q ss_pred CCC---CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHHH
Q 008664 255 NPS---FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DARV 325 (558)
Q Consensus 255 n~~---~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R~ 325 (558)
+.+ +..+++|.+||+.|.+++|+.++...||+.....++.+ +++.++++++..+++++.. -+..
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~-------h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhc-------cCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 653 46799999999999999999999999999988876654 6899999999998876443 5679
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
++.+|+.++...... + .... ...|+.+++.+++.+.
T Consensus 398 aidlldea~a~~~~~-~--------~~~~-------~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 398 AIDVIDEAGARARLM-P--------VSKR-------KKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHHHHhhccC-c--------cccc-------ccccChhhHHHHHHHH
Confidence 999999998765431 0 0001 2358899998888754
No 89
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=2.6e-18 Score=174.87 Aligned_cols=182 Identities=20% Similarity=0.384 Sum_probs=142.4
Q ss_pred CCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCCc----------------eEEEEecc
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVSY----------------KFVCLSAV 194 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~~----------------~~i~l~~~ 194 (558)
.|++++||++++ ..+.+.+..++. +.+||+||+|+||+++|.++|+.+.+.. +++.+...
T Consensus 2 ~f~~iiGq~~~~---~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 2 LFANLIGQPLAI---ELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred cHHHhCCHHHHH---HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 478999999998 999999999986 8999999999999999999999985321 12222221
Q ss_pred ------------------------cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEE
Q 008664 195 ------------------------TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFI 249 (558)
Q Consensus 195 ------------------------~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI 249 (558)
..+++.++++.+.+...+ ..+.+.|+|||++|.|+...++.||++||+ ...+||
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPP-LEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCc-ccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 123567777766665443 557889999999999999999999999998 334555
Q ss_pred eccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHH
Q 008664 250 GATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNA 329 (558)
Q Consensus 250 ~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~ 329 (558)
..|+ ++ ..+.++++|||+++.|.+++.+++..+|...... .... .....++..++|+++.+++.
T Consensus 158 Li~~-~~-~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~-----------~~~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAP-SP-ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE-----------EILN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEC-Ch-HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc-----------ccch---hHHHHHHHHcCCCHHHHHHH
Confidence 5553 34 5899999999999999999999999999976432 1111 12568889999999999998
Q ss_pred HHHH
Q 008664 330 LEIS 333 (558)
Q Consensus 330 Le~a 333 (558)
++..
T Consensus 222 l~~~ 225 (314)
T PRK07399 222 IEQL 225 (314)
T ss_pred HHHH
Confidence 8754
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.78 E-value=9.5e-19 Score=195.86 Aligned_cols=257 Identities=16% Similarity=0.225 Sum_probs=178.0
Q ss_pred CCCCCCCCccchhHHhhhhhhhhhc----ccCCCCcchhhhcccccCCCCCccCCCCCCCchhhcCCCCCCccccccccC
Q 008664 68 KLDRFFHFQTKPSSAAANAVQEKEK----DREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLL 143 (558)
Q Consensus 68 ~~~~~lp~k~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~dviGq~~~i 143 (558)
..++++|+|+++++|+|++..+... ...+...++...+....++|.......... ....+.-.--..|+||++++
T Consensus 389 i~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~-~l~~l~~~L~~~ViGQ~~ai 467 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRD-TLKNLGDRLKMLVFGQDKAI 467 (758)
T ss_pred ccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHH-HHHHHHHHhcceEeCcHHHH
Confidence 7889999999999999997654321 122444455666666666665443222111 11111122224589999998
Q ss_pred CchHHHHHHHHcC--------C-CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHH-HHHH----------
Q 008664 144 SPNSLLRSAVCSN--------R-LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVK-DVRD---------- 203 (558)
Q Consensus 144 ~~~~~l~~~i~~~--------~-~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~-~i~~---------- 203 (558)
..+..++... + ..++||+||||||||.+|+.+|+.++ .+++.++++..... .+..
T Consensus 468 ---~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~~i~id~se~~~~~~~~~LiG~~~gyvg 542 (758)
T PRK11034 468 ---EALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAPPGYVG 542 (758)
T ss_pred ---HHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CCcEEeechhhcccccHHHHcCCCCCccc
Confidence 7887777632 2 25799999999999999999999998 78888887654211 1111
Q ss_pred -----HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCC---------
Q 008664 204 -----AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENP--------- 256 (558)
Q Consensus 204 -----~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~--------- 256 (558)
.+.++. ...+.+||||||||+++++.++.|+++|++|. .++|++|+...
T Consensus 543 ~~~~g~L~~~v----~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g 618 (758)
T PRK11034 543 FDQGGLLTDAV----IKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIG 618 (758)
T ss_pred ccccchHHHHH----HhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccC
Confidence 222221 12367899999999999999999999998753 34666664210
Q ss_pred --------------CCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC--
Q 008664 257 --------------SFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC-- 319 (558)
Q Consensus 257 --------------~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s-- 319 (558)
...+.|+|++|+. ++.|+|++.+++..|+...+.+....+.. .+..+.++++++++|++..
T Consensus 619 ~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~--~~i~l~~~~~~~~~l~~~~~~ 696 (758)
T PRK11034 619 LIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQ--KGVSLEVSQEARDWLAEKGYD 696 (758)
T ss_pred cccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCceECHHHHHHHHHhCCC
Confidence 0236689999995 89999999999999999988876655522 2357889999999999862
Q ss_pred -CCCHHHHHHHHHHHHHH
Q 008664 320 -DGDARVALNALEISAIT 336 (558)
Q Consensus 320 -~Gd~R~~~~~Le~a~~~ 336 (558)
...+|.+.+.++..+..
T Consensus 697 ~~~GAR~l~r~i~~~l~~ 714 (758)
T PRK11034 697 RAMGARPMARVIQDNLKK 714 (758)
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 33678888877776543
No 91
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=6.2e-18 Score=176.88 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=162.0
Q ss_pred CCCCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHH-HHH
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRD-AVE 206 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~-~~~ 206 (558)
....+++|+...+ ..+++.+.+- .-.++||+|++||||..+|++|++... .+.+|+.+||.....+-+.. +|.
T Consensus 138 ~~~~~liG~S~am---~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAM---QQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG 214 (464)
T ss_pred cccCCceecCHHH---HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc
Confidence 3567899999998 7777777552 236899999999999999999999986 34699999998887766655 333
Q ss_pred HHHH----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----C
Q 008664 207 DARK----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----F 258 (558)
Q Consensus 207 ~~~~----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~ 258 (558)
..+- .......+++||||||..|+.+.|..||.+++++. +.+|++|+.|.. .
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G 294 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAG 294 (464)
T ss_pred ccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcC
Confidence 2110 01123478999999999999999999999998743 568888876653 3
Q ss_pred CCcHHhhcccce--eeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHH
Q 008664 259 HLITPLLSRCRV--LTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEIS 333 (558)
Q Consensus 259 ~l~~aL~sR~~~--i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a 333 (558)
.+.+.|..|+.+ +.++||.+ +||.-++.+++.+....+ +.....++++++..|..+ |+||+|++.|+++++
T Consensus 295 ~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~----~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~ 370 (464)
T COG2204 295 RFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAEL----GRPPKGFSPEALAALLAYDWPGNVRELENVVERA 370 (464)
T ss_pred CcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 566788889864 56788876 999999999998877665 557788999999999999 999999999999999
Q ss_pred HHHhcc
Q 008664 334 AITAAV 339 (558)
Q Consensus 334 ~~~a~~ 339 (558)
+..+..
T Consensus 371 ~il~~~ 376 (464)
T COG2204 371 VILSEG 376 (464)
T ss_pred HhcCCc
Confidence 998764
No 92
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.77 E-value=1.5e-17 Score=176.96 Aligned_cols=267 Identities=19% Similarity=0.339 Sum_probs=168.9
Q ss_pred CCCccc-cccccCCchHHHHHHHHc------CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHH
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCS------NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRD 203 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~------~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~ 203 (558)
+|++++ |..... ....+..+... ...++++||||+|+|||+|++++++.+. ....++.+++..... .+..
T Consensus 109 tFdnFv~g~~N~~-a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~ 186 (445)
T PRK12422 109 TFANFLVTPENDL-PHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVS 186 (445)
T ss_pred cccceeeCCcHHH-HHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHH
Confidence 777776 544332 11334444331 1236799999999999999999999873 235666666533221 1111
Q ss_pred HHHH--HHHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHh----cCcEEEEeccCC-CCCCCCcHHhhccc---cee
Q 008664 204 AVED--ARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIE----DGSIVFIGATTE-NPSFHLITPLLSRC---RVL 271 (558)
Q Consensus 204 ~~~~--~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le----~~~iilI~att~-n~~~~l~~aL~sR~---~~i 271 (558)
.+.. ............+|+|||+|.+.. ..|+.|+.+++ ++..+++.++.. .....+.+.|.||| .++
T Consensus 187 ~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~ 266 (445)
T PRK12422 187 AIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAI 266 (445)
T ss_pred HHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEE
Confidence 1111 111111234678999999999864 45666666653 455444443321 12245778999999 589
Q ss_pred eccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH---HHhcccCCccchhh
Q 008664 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA---ITAAVRVPVKEVKE 348 (558)
Q Consensus 272 ~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~---~~a~~~~~~~~~~~ 348 (558)
.+.+|+.+++..+|++.+.. .++.++++++++|+....+|+|.+++.|+.++ .++...
T Consensus 267 ~l~~pd~e~r~~iL~~k~~~-----------~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~-------- 327 (445)
T PRK12422 267 PLHPLTKEGLRSFLERKAEA-----------LSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLS-------- 327 (445)
T ss_pred ecCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh--------
Confidence 99999999999999999877 67899999999999999999999999999996 333321
Q ss_pred hhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcC-------CCHHHHHHHHHHHHhCCCCh
Q 008664 349 VEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRG-------NDADAAIYWLARMLEGGEQP 421 (558)
Q Consensus 349 ~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rg-------sd~~aal~~l~~ll~~gedp 421 (558)
...||.+.+++++......-.+..-..-+++.++.+...- ..-... ...+|-+.
T Consensus 328 -------------~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~~R~~~-i~~~Rqia----- 388 (445)
T PRK12422 328 -------------HQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSRE-YVLPRQVA----- 388 (445)
T ss_pred -------------CCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcCCCCcc-cccHHHHH-----
Confidence 2468999998888743111111111223444444443321 111111 12233332
Q ss_pred HHHHHHHhhcccccccc
Q 008664 422 LYIARRLVRFASEDVGL 438 (558)
Q Consensus 422 ~~I~rrl~~~a~edigl 438 (558)
+|++|++......+||-
T Consensus 389 myl~r~~t~~s~~~IG~ 405 (445)
T PRK12422 389 MYLCRQKLSLSYVKIGD 405 (445)
T ss_pred HHHHHHhcCCCHHHHHH
Confidence 58999999888888874
No 93
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=1.3e-17 Score=179.38 Aligned_cols=265 Identities=20% Similarity=0.284 Sum_probs=169.9
Q ss_pred CCCccc-cccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccccHHHHHHHH
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTSGVKDVRDAV 205 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~~~~~i~~~~ 205 (558)
+|++++ |..... ....+..+.... ..++++||||||+|||+|++++++.+.. ...++.+++..... .+...+
T Consensus 120 tfd~fv~g~~n~~-a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRL-AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNAL 197 (450)
T ss_pred cccccccCCCcHH-HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHH
Confidence 677755 543322 123444444432 2367999999999999999999999842 35677777654321 111111
Q ss_pred HH--HHHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHh----cCcEEEEeccCCCCC--CCCcHHhhccc---ceee
Q 008664 206 ED--ARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIE----DGSIVFIGATTENPS--FHLITPLLSRC---RVLT 272 (558)
Q Consensus 206 ~~--~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le----~~~iilI~att~n~~--~~l~~aL~sR~---~~i~ 272 (558)
.. ............+|+|||+|.+.. ..++.|+.+++ .+..++|+++ ..|. ..+.+.|.||+ .++.
T Consensus 198 ~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~-~~p~~l~~l~~~l~SRl~~gl~v~ 276 (450)
T PRK00149 198 RNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD-RPPKELPGLEERLRSRFEWGLTVD 276 (450)
T ss_pred HcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC-CCHHHHHHHHHHHHhHhcCCeeEE
Confidence 10 001111223567999999999864 34566666554 4555555433 2332 23678999999 4899
Q ss_pred ccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcc
Q 008664 273 LNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352 (558)
Q Consensus 273 ~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~ 352 (558)
|.+|+.+++..+|+..+.. .++.++++++++|++.+.||+|.+...|..+...+...
T Consensus 277 i~~pd~~~r~~il~~~~~~-----------~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~------------ 333 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEE-----------EGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLT------------ 333 (450)
T ss_pred ecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhh------------
Confidence 9999999999999999877 68889999999999999999999999999998776541
Q ss_pred ccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHH------HHHHHHHHHHhCCCChHHHHH
Q 008664 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDAD------AAIYWLARMLEGGEQPLYIAR 426 (558)
Q Consensus 353 ~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~------aal~~l~~ll~~gedp~~I~r 426 (558)
...||.+.+++++.... ...+..-..-+++.++.+...-+..+ ..-...+|.+. +|++|
T Consensus 334 ---------~~~it~~~~~~~l~~~~-~~~~~~~~~~~i~~~v~~~~~i~~~~l~~~~R~~~~~~aR~ia-----myl~~ 398 (450)
T PRK00149 334 ---------GKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIA-----MYLAK 398 (450)
T ss_pred ---------CCCCCHHHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccChHHHHH-----HHHHH
Confidence 34699999999998632 11222223345666655544222111 00011223222 57888
Q ss_pred HHhhccccccc
Q 008664 427 RLVRFASEDVG 437 (558)
Q Consensus 427 rl~~~a~edig 437 (558)
++......+||
T Consensus 399 ~~~~~s~~~Ig 409 (450)
T PRK00149 399 ELTDLSLPEIG 409 (450)
T ss_pred HhcCCCHHHHH
Confidence 88877777776
No 94
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=1.2e-17 Score=174.18 Aligned_cols=204 Identities=21% Similarity=0.279 Sum_probs=157.9
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHH
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAV 205 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~ 205 (558)
...+|++++|....+ ..+.+.+++. ...++||.|++||||..+|++|++... .+.+|+.+||......-+..-+
T Consensus 240 a~y~f~~Iig~S~~m---~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESEL 316 (560)
T COG3829 240 AKYTFDDIIGESPAM---LRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESEL 316 (560)
T ss_pred cccchhhhccCCHHH---HHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHH
Confidence 345899999998877 5554444432 237899999999999999999999986 4589999999877554443322
Q ss_pred H--------HHHHh----hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC---
Q 008664 206 E--------DARKL----RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS--- 257 (558)
Q Consensus 206 ~--------~~~~~----~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~--- 257 (558)
- .+... ......++.||+|||..|+...|..||++++++. +.+|+||+.|+.
T Consensus 317 FGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 317 FGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred hCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 2 22110 1122367899999999999999999999998843 678999987764
Q ss_pred --CCCcHHhhcccce--eeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHH
Q 008664 258 --FHLITPLLSRCRV--LTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNAL 330 (558)
Q Consensus 258 --~~l~~aL~sR~~~--i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~L 330 (558)
..+...|.-|..+ +.++||.+ +|+..+...++.+++..+ +..-..++++++..|.++ |+||+|++.|++
T Consensus 397 ~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~----~~~v~~ls~~a~~~L~~y~WPGNVRELeNvi 472 (560)
T COG3829 397 AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRY----GRNVKGLSPDALALLLRYDWPGNVRELENVI 472 (560)
T ss_pred hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHc----CCCcccCCHHHHHHHHhCCCCchHHHHHHHH
Confidence 3456678888864 66888876 999999999999888776 444455999999999999 999999999999
Q ss_pred HHHHHHhcc
Q 008664 331 EISAITAAV 339 (558)
Q Consensus 331 e~a~~~a~~ 339 (558)
+++......
T Consensus 473 ER~v~~~~~ 481 (560)
T COG3829 473 ERAVNLVES 481 (560)
T ss_pred HHHHhccCC
Confidence 999986544
No 95
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.77 E-value=2.8e-18 Score=196.42 Aligned_cols=203 Identities=17% Similarity=0.232 Sum_probs=166.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~ 192 (558)
...|+++.+...+++++|++..+ ..+..++.+...++++|+||||||||++|+.+|+.+. .+..++.++
T Consensus 166 ~~~l~~~a~~~~~~~~igr~~ei---~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 166 GTNLTKEAIDGNLDPVIGREKEI---ERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred HHHHHHHHHcCCCCCCCCcHHHH---HHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 34577888888999999999998 9999999988889999999999999999999999874 236777777
Q ss_pred cccc---------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------HHHHHHHhhHhcCcEEEEeccCCC
Q 008664 193 AVTS---------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------SQQDSFLPVIEDGSIVFIGATTEN 255 (558)
Q Consensus 193 ~~~~---------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------~~~~~Ll~~le~~~iilI~att~n 255 (558)
.... -.+.++.+++++.. ..+.||||||||.+.. +..+.|.+.+..|.+.+|++||.+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 5321 13356667776643 2578999999998754 357889999999999999999987
Q ss_pred CC---CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHHHH
Q 008664 256 PS---FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DARVA 326 (558)
Q Consensus 256 ~~---~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R~~ 326 (558)
++ ...+++|.+||+.+.+.+++.++...+++.....+... .++.++++++..++..+.| -++.+
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~-------~~v~i~deal~~i~~ls~~yi~~r~lPdka 390 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKH-------HNLSISDKALEAAAKLSDQYIADRFLPDKA 390 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhccCccccCchHH
Confidence 65 45789999999999999999999999999887765544 4566999999999998765 38899
Q ss_pred HHHHHHHHHHhc
Q 008664 327 LNALEISAITAA 338 (558)
Q Consensus 327 ~~~Le~a~~~a~ 338 (558)
+.+|+.++....
T Consensus 391 idlld~a~a~~~ 402 (821)
T CHL00095 391 IDLLDEAGSRVR 402 (821)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 96
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.8e-18 Score=177.30 Aligned_cols=178 Identities=24% Similarity=0.350 Sum_probs=138.9
Q ss_pred CCCccccccccCCchHHHHHHHHc---C---------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc----
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCS---N---------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT---- 195 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~---~---------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~---- 195 (558)
+|.++-|.+..+ ..|..++.. . .++++||+||||||||.||++||.+++ .+|+.+++..
T Consensus 188 ~f~diGG~d~~~---~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTL---AELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHH---HHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhhcc
Confidence 588898988887 555554432 1 237899999999999999999999999 9999998743
Q ss_pred ---ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH-----------HHHHHHhhHhc--------CcEEEEeccC
Q 008664 196 ---SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-----------QQDSFLPVIED--------GSIVFIGATT 253 (558)
Q Consensus 196 ---~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-----------~~~~Ll~~le~--------~~iilI~att 253 (558)
.+++.++++|+++... .++|+||||||.+.+. ....|+..|++ ..+++|++|
T Consensus 263 vSGESEkkiRelF~~A~~~-----aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgAT- 336 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSN-----APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGAT- 336 (802)
T ss_pred cCcccHHHHHHHHHHHhcc-----CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecC-
Confidence 3678899999999665 7899999999998753 34478888876 348899998
Q ss_pred CCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 254 ENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 254 ~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
|..+.++++|++ || +-|.+.-++.....+||+.+|..+. ....+ ....||..++|-+..-+..|
T Consensus 337 -nRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr---------l~g~~---d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 337 -NRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR---------LSGDF---DFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred -CCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC---------CCCCc---CHHHHHhcCCCccchhHHHH
Confidence 677799999988 66 5788999999999999999986511 11122 26789999999776655555
Q ss_pred HHH
Q 008664 331 EIS 333 (558)
Q Consensus 331 e~a 333 (558)
-..
T Consensus 404 ~~~ 406 (802)
T KOG0733|consen 404 CRE 406 (802)
T ss_pred HHH
Confidence 443
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=1e-16 Score=170.87 Aligned_cols=210 Identities=18% Similarity=0.246 Sum_probs=143.8
Q ss_pred CCCccc-cccccCCchHHHHHHHHc-CCCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHHH--
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCS-NRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRDA-- 204 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~-~~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~~-- 204 (558)
+|++++ |..... .......+... ++.++++||||||+|||+|++++++.+. ....++.+++.+....-+..+
T Consensus 103 tFdnFv~g~~n~~-a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~ 181 (440)
T PRK14088 103 TFENFVVGPGNSF-AYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE 181 (440)
T ss_pred cccccccCCchHH-HHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc
Confidence 677776 544332 11333344432 3346899999999999999999999873 235667776643211111111
Q ss_pred --HHHHHHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHh----cCcEEEEeccCCCCC--CCCcHHhhcccc---ee
Q 008664 205 --VEDARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIE----DGSIVFIGATTENPS--FHLITPLLSRCR---VL 271 (558)
Q Consensus 205 --~~~~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le----~~~iilI~att~n~~--~~l~~aL~sR~~---~i 271 (558)
....... ......+|+|||++.+.. ..+..|+..++ .+..++|. ++.+|. ..+.+.+.|||. ++
T Consensus 182 ~~~~~f~~~--~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIit-sd~~p~~l~~l~~rL~SR~~~gl~v 258 (440)
T PRK14088 182 GKLNEFREK--YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC-SDREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_pred ccHHHHHHH--HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEE-CCCCHHHHHHHHHHHhhHHhcCceE
Confidence 0111110 112467999999998743 24556666553 35544443 333443 245678999995 89
Q ss_pred eccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhc
Q 008664 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351 (558)
Q Consensus 272 ~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~ 351 (558)
.+.+|+.+++..||++.+.. .++.++++++++|++.+.||+|.+...|.++...+...
T Consensus 259 ~i~~pd~e~r~~IL~~~~~~-----------~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~----------- 316 (440)
T PRK14088 259 KLEPPDEETRKKIARKMLEI-----------EHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETT----------- 316 (440)
T ss_pred eeCCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999998877 67889999999999999999999999999998776542
Q ss_pred cccCCCCCCCccccCHHHHHHHHhhc
Q 008664 352 EDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 352 ~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
...||.+.+++++...
T Consensus 317 ----------~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 317 ----------GEEVDLKEAILLLKDF 332 (440)
T ss_pred ----------CCCCCHHHHHHHHHHH
Confidence 3569999999988753
No 98
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-17 Score=174.52 Aligned_cols=232 Identities=22% Similarity=0.338 Sum_probs=157.6
Q ss_pred CCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc---
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV--- 194 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~--- 194 (558)
.+++||-+++++. ..|..++... .+.++|||||||||||.||+++|++.+ ..|+.+...
T Consensus 508 VtW~dIGaL~~vR---~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag--~NFisVKGPELl 582 (802)
T KOG0733|consen 508 VTWDDIGALEEVR---LELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG--ANFISVKGPELL 582 (802)
T ss_pred CChhhcccHHHHH---HHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc--CceEeecCHHHH
Confidence 4678888888876 7777776653 236899999999999999999999999 999988763
Q ss_pred ----cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEeccCCC
Q 008664 195 ----TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGATTEN 255 (558)
Q Consensus 195 ----~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~att~n 255 (558)
..++..+|++|..++.. .++|||+||+|.|.+ ...+.||.-|+. ..+.+|+|| |
T Consensus 583 NkYVGESErAVR~vFqRAR~s-----aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT--N 655 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARAS-----APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT--N 655 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcC-----CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec--C
Confidence 33667789999998664 799999999999854 356788887765 458888888 7
Q ss_pred CCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhC--CC----CHHH
Q 008664 256 PSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNC--DG----DARV 325 (558)
Q Consensus 256 ~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s--~G----d~R~ 325 (558)
..+.+++++++ |+ ..+.+..++.+|..+||+...+. .+..++++ .++.|++.. .| |+-.
T Consensus 656 RPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn-----------~k~pl~~dVdl~eia~~~~c~gftGADLaa 724 (802)
T KOG0733|consen 656 RPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN-----------TKPPLSSDVDLDEIARNTKCEGFTGADLAA 724 (802)
T ss_pred CCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc-----------CCCCCCcccCHHHHhhcccccCCchhhHHH
Confidence 77899999998 55 47788888999999999988764 33344333 366777652 23 4433
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHH
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLI 392 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~i 392 (558)
+. +.+...+-.+.-+ ++.....+.........+|..++++++++......+....+|+-+
T Consensus 725 Lv---reAsi~AL~~~~~----~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l 784 (802)
T KOG0733|consen 725 LV---REASILALRESLF----EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRL 784 (802)
T ss_pred HH---HHHHHHHHHHHHh----hccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 33 2222222110000 000000000000113358888999999987666665555566554
No 99
>CHL00176 ftsH cell division protein; Validated
Probab=99.76 E-value=1e-17 Score=184.59 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=151.6
Q ss_pred CCCCccccccccCCchHHHHHHHHcC---------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-----
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSN---------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS----- 196 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~---------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~----- 196 (558)
.+|+|++|.++.......+..+++.. .+.++||+||||||||++|+++|.+.+ .+++.++++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VPFFSISGSEFVEMFV 257 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeeeccHHHHHHHhh
Confidence 57899999988873333443333332 136899999999999999999999998 88998887543
Q ss_pred --cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HH---HHHHHhhHhc----CcEEEEeccCCCC
Q 008664 197 --GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQ---QDSFLPVIED----GSIVFIGATTENP 256 (558)
Q Consensus 197 --~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~---~~~Ll~~le~----~~iilI~att~n~ 256 (558)
+...++.++..+.. ..++||||||||.+.. .. .+.|+..++. ..+++|++| |.
T Consensus 258 g~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT--N~ 330 (638)
T CHL00176 258 GVGAARVRDLFKKAKE-----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT--NR 330 (638)
T ss_pred hhhHHHHHHHHHHHhc-----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec--Cc
Confidence 33456667766643 3678999999998842 22 3344544442 457788877 55
Q ss_pred CCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHHHHH
Q 008664 257 SFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNALEI 332 (558)
Q Consensus 257 ~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~Le~ 332 (558)
...+++++++ || ..+.|.+|+.+++..|++..+.. .. ..++..+..|++.+.| +.+.+.++++.
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-----------~~-~~~d~~l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-----------KK-LSPDVSLELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-----------cc-cchhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5678999997 55 58999999999999999998865 11 1245678899999888 88888888888
Q ss_pred HHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 333 SAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 333 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
++..+... + ...||.+++.+++.+.
T Consensus 399 Aal~a~r~-------------~-------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 399 AAILTARR-------------K-------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHh-------------C-------CCCcCHHHHHHHHHHH
Confidence 87654331 2 3569999999998764
No 100
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.76 E-value=3.1e-17 Score=161.96 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=107.8
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccCC----------CCCCCCcHHhhcccceeeccCCCHHHHHHHH
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATTE----------NPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att~----------n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL 285 (558)
-++||||||+|.|+-+.+..|.+.||+ -.-++|.||+. ..++-++..|+.|..++.-.|++.++++.|+
T Consensus 291 VpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 291 VPGVLFIDEVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred ecceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 378999999999999999999999988 33455566632 1235688999999999999999999999999
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccc
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (558)
+..+.. +++.++++|+++|+.. ..-++|.++++|.-+...+..+ + ...
T Consensus 371 ~iRa~e-----------e~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r-------------g-------~~~ 419 (450)
T COG1224 371 RIRAKE-----------EDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR-------------G-------SKR 419 (450)
T ss_pred HHhhhh-----------hccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-------------C-------CCe
Confidence 999988 8999999999999999 6679999999999877776542 3 457
Q ss_pred cCHHHHHHHHh
Q 008664 365 VTLDDAKEAFQ 375 (558)
Q Consensus 365 It~e~v~~~l~ 375 (558)
|..+||+++..
T Consensus 420 V~~~dVe~a~~ 430 (450)
T COG1224 420 VEVEDVERAKE 430 (450)
T ss_pred eehhHHHHHHH
Confidence 99999988754
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=5.7e-17 Score=173.06 Aligned_cols=270 Identities=15% Similarity=0.265 Sum_probs=169.2
Q ss_pred CCCCCccc-cccccCCchHHHHHHHHc-C-CCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHH
Q 008664 130 PVNINDVV-GQDHLLSPNSLLRSAVCS-N-RLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRD 203 (558)
Q Consensus 130 p~~~~dvi-Gq~~~i~~~~~l~~~i~~-~-~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~ 203 (558)
+.+|+.++ |..... .......+... + ..++++|||++|+|||+|++++++.+. ....++.+++......-...
T Consensus 111 ~~tFdnFv~g~~n~~-A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 111 ENTFENFVIGSSNEQ-AFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred ccchhcccCCCcHHH-HHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 45788876 433321 11334444432 2 236799999999999999999999763 33666777664332111111
Q ss_pred HH---HHHHHhhhhcCCceEEEEeCCccCC--HHHHHHHHhhHhc----CcEEEEeccCCCCC--CCCcHHhhccc---c
Q 008664 204 AV---EDARKLRVKSNKRTVLFVDEVHRFN--KSQQDSFLPVIED----GSIVFIGATTENPS--FHLITPLLSRC---R 269 (558)
Q Consensus 204 ~~---~~~~~~~~~~~~~~il~IDEid~l~--~~~~~~Ll~~le~----~~iilI~att~n~~--~~l~~aL~sR~---~ 269 (558)
+- ..............+|+|||+|.+. ...++.|+.+++. +..+++ ++...|. ..+.+.|.||+ .
T Consensus 190 l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIl-tsd~~P~~l~~l~~rL~SR~~~Gl 268 (450)
T PRK14087 190 LQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFF-SSDKSPELLNGFDNRLITRFNMGL 268 (450)
T ss_pred HHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEE-ECCCCHHHHhhccHHHHHHHhCCc
Confidence 10 0111111123467899999999987 4567777776644 443333 3322232 24678999998 4
Q ss_pred eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcc--cccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchh
Q 008664 270 VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTR--VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVK 347 (558)
Q Consensus 270 ~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~--~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~ 347 (558)
++.+.+|+.+++.++|++.+.. .+ +.++++++++|++.++||+|.+.++|.++...+...
T Consensus 269 ~~~L~~pd~e~r~~iL~~~~~~-----------~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~------- 330 (450)
T PRK14087 269 SIAIQKLDNKTATAIIKKEIKN-----------QNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQN------- 330 (450)
T ss_pred eeccCCcCHHHHHHHHHHHHHh-----------cCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcc-------
Confidence 8999999999999999999876 33 379999999999999999999999999997665431
Q ss_pred hhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhCCCC
Q 008664 348 EVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR-------GNDADAAIYWLARMLEGGEQ 420 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~r-------gsd~~aal~~l~~ll~~ged 420 (558)
. ....||.+.+++++.... ...+..-..-+++.++.+... |..-... ...+|.+.
T Consensus 331 ------~------~~~~it~~~v~~~l~~~~-~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~-i~~~Rqia---- 392 (450)
T PRK14087 331 ------P------EEKIITIEIVSDLFRDIP-TSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKS-IVTARHIA---- 392 (450)
T ss_pred ------c------CCCCCCHHHHHHHHhhcc-ccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcc-ccHHHHHH----
Confidence 0 014689999988887531 111111223344444444322 2111111 12344433
Q ss_pred hHHHHHHHhhcccccccc
Q 008664 421 PLYIARRLVRFASEDVGL 438 (558)
Q Consensus 421 p~~I~rrl~~~a~edigl 438 (558)
+|++|++......+||-
T Consensus 393 -myL~r~~t~~sl~~IG~ 409 (450)
T PRK14087 393 -MYLTKEILNHTLAQIGE 409 (450)
T ss_pred -HHHHHHHcCCCHHHHHH
Confidence 58999999888888864
No 102
>PRK09087 hypothetical protein; Validated
Probab=99.76 E-value=1.1e-17 Score=162.77 Aligned_cols=194 Identities=16% Similarity=0.206 Sum_probs=141.0
Q ss_pred CCCcccc-ccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHH
Q 008664 132 NINDVVG-QDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARK 210 (558)
Q Consensus 132 ~~~dviG-q~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~ 210 (558)
+|++++. ..+.. ....+.++. ....+.++||||+|+|||||++++++..+ ..++... ..+.+ ++...
T Consensus 19 ~~~~Fi~~~~N~~-a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~--~~~~~----~~~~~-- 86 (226)
T PRK09087 19 GRDDLLVTESNRA-AVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKSD--ALLIHPN--EIGSD----AANAA-- 86 (226)
T ss_pred ChhceeecCchHH-HHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhcC--CEEecHH--HcchH----HHHhh--
Confidence 6888774 32211 113333322 11224599999999999999999998866 5544332 11111 11111
Q ss_pred hhhhcCCceEEEEeCCccCCHHHHHHHHhhH----hcCcEEEEeccCCCCCCCC-cHHhhccc---ceeeccCCCHHHHH
Q 008664 211 LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI----EDGSIVFIGATTENPSFHL-ITPLLSRC---RVLTLNPLKPHDVE 282 (558)
Q Consensus 211 ~~~~~~~~~il~IDEid~l~~~~~~~Ll~~l----e~~~iilI~att~n~~~~l-~~aL~sR~---~~i~~~~l~~~~i~ 282 (558)
...+|+|||+|.+.. .+..|+.++ +.+..++|.+++.++.... .+.|+||+ .++.+.+++.+++.
T Consensus 87 ------~~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 87 ------AEGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLS 159 (226)
T ss_pred ------hcCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHH
Confidence 125899999998753 345566555 4477888888877776665 79999999 79999999999999
Q ss_pred HHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCc
Q 008664 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362 (558)
Q Consensus 283 ~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (558)
.++++.+.. .++.++++++++|++.+.|++|.++.+|+++...+... +
T Consensus 160 ~iL~~~~~~-----------~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~---------------------~ 207 (226)
T PRK09087 160 QVIFKLFAD-----------RQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALER---------------------K 207 (226)
T ss_pred HHHHHHHHH-----------cCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh---------------------C
Confidence 999999987 78899999999999999999999999888887665431 3
Q ss_pred cccCHHHHHHHHhh
Q 008664 363 ALVTLDDAKEAFQC 376 (558)
Q Consensus 363 ~~It~e~v~~~l~~ 376 (558)
..||...+++++..
T Consensus 208 ~~it~~~~~~~l~~ 221 (226)
T PRK09087 208 SRITRALAAEVLNE 221 (226)
T ss_pred CCCCHHHHHHHHHh
Confidence 56999999999874
No 103
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=4.7e-17 Score=175.71 Aligned_cols=267 Identities=15% Similarity=0.232 Sum_probs=168.7
Q ss_pred CCCccc-cccccCCchHHHHHHHHc-C-CCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHHHH
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCS-N-RLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRDAV 205 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~-~-~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~~~ 205 (558)
+|++|+ |..+.+ ....+..+... + ..+.++|||++|+|||+|+++|++.+. ....++.+++.....+-+..+.
T Consensus 286 TFDnFvvG~sN~~-A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~ 364 (617)
T PRK14086 286 TFDTFVIGASNRF-AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIR 364 (617)
T ss_pred CHhhhcCCCccHH-HHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH
Confidence 677776 443321 01233443332 1 235699999999999999999999874 2356677766433221111111
Q ss_pred HHH-HHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHhc----CcEEEEeccCCCCC--CCCcHHhhccc---ceeec
Q 008664 206 EDA-RKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIED----GSIVFIGATTENPS--FHLITPLLSRC---RVLTL 273 (558)
Q Consensus 206 ~~~-~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le~----~~iilI~att~n~~--~~l~~aL~sR~---~~i~~ 273 (558)
... ...........+|+||||+.+.. ..++.|+.+++. +..++| +++..+. ..+.+.|.||+ .++.+
T Consensus 365 ~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I 443 (617)
T PRK14086 365 DGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDV 443 (617)
T ss_pred hccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEc
Confidence 100 01111233568999999999854 345667776654 443444 3322222 34678999998 48999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~ 353 (558)
.+++.+....||++.+.. .++.++++++++|++...+|+|.+..+|.++..++...
T Consensus 444 ~~PD~EtR~aIL~kka~~-----------r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~------------- 499 (617)
T PRK14086 444 QPPELETRIAILRKKAVQ-----------EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN------------- 499 (617)
T ss_pred CCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh-------------
Confidence 999999999999999877 78999999999999999999999999999998776542
Q ss_pred cCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhCCCChHHHHH
Q 008664 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR-------GNDADAAIYWLARMLEGGEQPLYIAR 426 (558)
Q Consensus 354 ~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~r-------gsd~~aal~~l~~ll~~gedp~~I~r 426 (558)
...||.+.+++++......-.+..-..-+++..+.+... ++.-.. -...+|.+. +|++|
T Consensus 500 --------~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~v~~~dl~s~~R~~-~i~~aRqiA-----MYL~r 565 (617)
T PRK14086 500 --------RQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDLCGTSRSR-VLVTARQIA-----MYLCR 565 (617)
T ss_pred --------CCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhCCCHHHHhCCCCCc-ccchHHHHH-----HHHHH
Confidence 346888888888864311111111122344444444332 111111 112344433 58888
Q ss_pred HHhhcccccccc
Q 008664 427 RLVRFASEDVGL 438 (558)
Q Consensus 427 rl~~~a~edigl 438 (558)
++......+||-
T Consensus 566 ~lt~~Sl~~IG~ 577 (617)
T PRK14086 566 ELTDLSLPKIGQ 577 (617)
T ss_pred HHcCCCHHHHHH
Confidence 888888877764
No 104
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=1.9e-16 Score=162.18 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=132.3
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC----------------------ceEEEEecc----cccHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS----------------------YKFVCLSAV----TSGVK 199 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~----------------------~~~i~l~~~----~~~~~ 199 (558)
..+.+++..++. +.+||+||+|+|||++|+.+|+.+.|. .+++.+... ..+++
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id 89 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVD 89 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHH
Confidence 455666777776 569999999999999999999998742 245555432 35789
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCC
Q 008664 200 DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277 (558)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~ 277 (558)
++|++.+.+...+ ..+...|+||||+|+|+...++.||+.+|+ +..+||.+|+ ++ ..+.++++|||+.+.|.+++
T Consensus 90 ~iR~l~~~~~~~~-~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~-~~-~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 90 QVRELVSFVVQTA-QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISH-QP-SRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred HHHHHHHHHhhcc-ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEEC-Ch-hhCcHHHHhhceeeeCCCcC
Confidence 9999988776554 456788999999999999999999999999 5677776653 44 36899999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 278 ~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
.+++..+|..... ..+++....++..++|++..++.+++
T Consensus 167 ~~~~~~~L~~~~~---------------~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 167 NEESLQWLQQALP---------------ESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHHHHHHHHhcc---------------cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 9999999875421 13456667788999999999887754
No 105
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=166.69 Aligned_cols=218 Identities=24% Similarity=0.296 Sum_probs=146.6
Q ss_pred CCCCccccccccCCchHHHHHHHHcC------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSN------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-- 196 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-- 196 (558)
..++||.|..+++ +.|..++-.. ...++|++||||||||.||+++|.+++ ..|+.+++++.
T Consensus 209 ikW~DIagl~~AK---~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--tTFFNVSsstltS 283 (491)
T KOG0738|consen 209 IKWDDIAGLHEAK---KLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--TTFFNVSSSTLTS 283 (491)
T ss_pred cChHhhcchHHHH---HHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--CeEEEechhhhhh
Confidence 4678999998887 7888777643 137899999999999999999999999 99999998765
Q ss_pred -----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC------------HHHHHHHHhhHhc-------CcEEEEecc
Q 008664 197 -----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN------------KSQQDSFLPVIED-------GSIVFIGAT 252 (558)
Q Consensus 197 -----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~------------~~~~~~Ll~~le~-------~~iilI~at 252 (558)
+++-+|-+|+-++.. .+++|||||||.+. +.....||..|+. .++++|.|.
T Consensus 284 KwRGeSEKlvRlLFemARfy-----APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFY-----APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhccchHHHHHHHHHHHHHh-----CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 445577777777655 78999999999883 2356678877765 356777776
Q ss_pred CCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCC-HHHHHHHH
Q 008664 253 TENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD-ARVALNAL 330 (558)
Q Consensus 253 t~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd-~R~~~~~L 330 (558)
| |....|+.+|++|+. .|.++-++.+....+|+..+.. ....++-.++.|++.+.|- --.+.|++
T Consensus 359 T-N~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~------------~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 359 T-NFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS------------VELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred c-CCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc------------ccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 6 666799999999996 6777777777777777776643 1122334466777765552 22233334
Q ss_pred HHHHHHhcccC-Ccc---chhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 331 EISAITAAVRV-PVK---EVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 331 e~a~~~a~~~~-~~~---~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
..+...+-.+. ... +.....++.- ...|+.+|+++++.+..
T Consensus 426 reAsm~~mRR~i~g~~~~ei~~lakE~~-------~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 426 REASMMAMRRKIAGLTPREIRQLAKEEP-------KMPVTNEDFEEALRKVR 470 (491)
T ss_pred HHHHHHHHHHHHhcCCcHHhhhhhhhcc-------ccccchhhHHHHHHHcC
Confidence 33333321100 000 0111111111 24688888888888754
No 106
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.75 E-value=1.9e-17 Score=181.79 Aligned_cols=205 Identities=22% Similarity=0.315 Sum_probs=157.4
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHH
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVR 202 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~ 202 (558)
.+.+..+++.++|++..+ ..+.+.++.- ...+++|+|++|||||++|++|+.... ...+|+.++|.......+.
T Consensus 188 ~~~~~~~~~~liG~s~~~---~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~ 264 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAM---RQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLE 264 (534)
T ss_pred cccccCccCceEECCHHH---HHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHH
Confidence 455567899999999887 6655555432 336899999999999999999999875 4479999999877554443
Q ss_pred HHH-HHHH----------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-
Q 008664 203 DAV-EDAR----------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS- 257 (558)
Q Consensus 203 ~~~-~~~~----------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~- 257 (558)
..+ .... ........+++||||||+.|+...|..|+.+++++. +.+|++|+.+..
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 322 1110 000122357899999999999999999999998753 678888876542
Q ss_pred ----CCCcHHhhcccc--eeeccCCC--HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHH
Q 008664 258 ----FHLITPLLSRCR--VLTLNPLK--PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALN 328 (558)
Q Consensus 258 ----~~l~~aL~sR~~--~i~~~~l~--~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~ 328 (558)
..+.+.|..|+. .|.++||. .+|+..++..++.++...+ +.. +.+++++++.|..+ |+||+|++.|
T Consensus 345 ~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~----~~~-~~~s~~a~~~L~~~~WPGNvrEL~~ 419 (534)
T TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN----GRP-LTITPSAIRVLMSCKWPGNVRELEN 419 (534)
T ss_pred HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc----CCC-CCCCHHHHHHHHhCCCCChHHHHHH
Confidence 356678888874 57799998 4899999999998765543 334 78999999999999 9999999999
Q ss_pred HHHHHHHHhc
Q 008664 329 ALEISAITAA 338 (558)
Q Consensus 329 ~Le~a~~~a~ 338 (558)
++++++..+.
T Consensus 420 v~~~a~~~~~ 429 (534)
T TIGR01817 420 CLERTATLSR 429 (534)
T ss_pred HHHHHHHhCC
Confidence 9999987764
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.75 E-value=3e-17 Score=172.71 Aligned_cols=204 Identities=24% Similarity=0.343 Sum_probs=147.9
Q ss_pred CCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
.+++++.|.+..+ ..+...+.. ..+.++||+||||||||++|+++|+.++ ..|+.+++...
T Consensus 128 ~~~~di~Gl~~~~---~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~~i~v~~~~l~ 202 (389)
T PRK03992 128 VTYEDIGGLEEQI---REVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSELV 202 (389)
T ss_pred CCHHHhCCcHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CCEEEeehHHHh
Confidence 4678899998887 777766542 2346899999999999999999999998 78888887543
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcEEEEecc
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSIVFIGAT 252 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~iilI~at 252 (558)
+...++.++..+.. ..++||||||+|.+. ...+..|..++.. +.+.+|++|
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~-----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 203 QKFIGEGARLVRELFELARE-----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred HhhccchHHHHHHHHHHHHh-----cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence 23445666665543 367899999999873 3445555555532 467888877
Q ss_pred CCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHH
Q 008664 253 TENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALN 328 (558)
Q Consensus 253 t~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~ 328 (558)
|....+++++++ || ..+.|++|+.++..+|++..+.. ..+. .+..+..|++.+.| ..+.+..
T Consensus 278 --n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~-----------~~~~-~~~~~~~la~~t~g~sgadl~~ 343 (389)
T PRK03992 278 --NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK-----------MNLA-DDVDLEELAELTEGASGADLKA 343 (389)
T ss_pred --CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc-----------CCCC-CcCCHHHHHHHcCCCCHHHHHH
Confidence 555689999987 77 57999999999999999987654 1111 11236778887666 5566777
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
++..+...+..+ + ...|+.+|+.+++.+..
T Consensus 344 l~~eA~~~a~~~-------------~-------~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 344 ICTEAGMFAIRD-------------D-------RTEVTMEDFLKAIEKVM 373 (389)
T ss_pred HHHHHHHHHHHc-------------C-------CCCcCHHHHHHHHHHHh
Confidence 777777665431 1 34799999999988754
No 108
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=7.8e-18 Score=190.70 Aligned_cols=256 Identities=18% Similarity=0.268 Sum_probs=173.8
Q ss_pred CCCCCCCCccchhHHhhhhhhhhhcc----cCCCCcchhhhcccccCCCCCccCCCCCCCchhhcCCCCCCccccccccC
Q 008664 68 KLDRFFHFQTKPSSAAANAVQEKEKD----REIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLL 143 (558)
Q Consensus 68 ~~~~~lp~k~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~dviGq~~~i 143 (558)
..++++|+|+++++++|++..+.... ..+...+....+.....+|..........-+ ....-.--..|+||++++
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l-~~l~~~l~~~v~GQ~~ai 463 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKL-KNLEKNLKAKIFGQDEAI 463 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHH-HHHHHHHhcceeCcHHHH
Confidence 77899999999999998886554322 2233344555555555554322211110011 111122234689999998
Q ss_pred CchHHHHHHHHcC--------CC-CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-----------------c
Q 008664 144 SPNSLLRSAVCSN--------RL-PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-----------------G 197 (558)
Q Consensus 144 ~~~~~l~~~i~~~--------~~-~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-----------------~ 197 (558)
..+.+++... ++ .+++|+||||||||++|+++|+.++ ..++.++++.. |
T Consensus 464 ---~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~--~~~~~~d~se~~~~~~~~~lig~~~gyvg 538 (731)
T TIGR02639 464 ---DSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG--VHLERFDMSEYMEKHTVSRLIGAPPGYVG 538 (731)
T ss_pred ---HHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc--CCeEEEeCchhhhcccHHHHhcCCCCCcc
Confidence 7777777642 12 4699999999999999999999998 66777765442 1
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCC--------
Q 008664 198 VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENP-------- 256 (558)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~-------- 256 (558)
.+....+.+..+ ..+++||||||||.++++.++.|++++++|. .++|++|+...
T Consensus 539 ~~~~~~l~~~~~-----~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~ 613 (731)
T TIGR02639 539 FEQGGLLTEAVR-----KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPI 613 (731)
T ss_pred cchhhHHHHHHH-----hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccC
Confidence 112222222222 2367999999999999999999999999863 33555542210
Q ss_pred ---------------CCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC-
Q 008664 257 ---------------SFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC- 319 (558)
Q Consensus 257 ---------------~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s- 319 (558)
...+.|+|++|+ .++.|+|++.+++..|+.+.+.+....+.. .+..+.++++++++|++.+
T Consensus 614 ~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~--~~~~l~i~~~a~~~La~~~~ 691 (731)
T TIGR02639 614 GFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE--KNIKLELTDDAKKYLAEKGY 691 (731)
T ss_pred CcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh--CCCeEEeCHHHHHHHHHhCC
Confidence 012567899999 599999999999999999999876655521 1246889999999999962
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 008664 320 --DGDARVALNALEISAIT 336 (558)
Q Consensus 320 --~Gd~R~~~~~Le~a~~~ 336 (558)
.-.+|.+.+.++..+..
T Consensus 692 ~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 692 DEEFGARPLARVIQEEIKK 710 (731)
T ss_pred CcccCchHHHHHHHHHhHH
Confidence 34688888888776543
No 109
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.75 E-value=1.5e-17 Score=171.24 Aligned_cols=176 Identities=22% Similarity=0.360 Sum_probs=138.2
Q ss_pred CCCcccc-ccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC------------------------
Q 008664 132 NINDVVG-QDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS------------------------ 185 (558)
Q Consensus 132 ~~~dviG-q~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~------------------------ 185 (558)
.++.|+| |++++ +.+...+..+++++ +||+||+|+|||++|+.+++.+.+.
T Consensus 3 ~~~~i~~~q~~~~---~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 3 TWEQLTALQPVVV---KMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred cHHHHHhhHHHHH---HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 3667888 88887 99999999998755 5999999999999999999998532
Q ss_pred ceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHH
Q 008664 186 YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITP 263 (558)
Q Consensus 186 ~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~a 263 (558)
..++.......++++++++.+.....+ ..+.+.|+||||+|+|+...++.||++||+ ..++||++|+ ++ ..+.++
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~-~~-~~ll~T 156 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE-NK-HQILPT 156 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC-Ch-HhCcHH
Confidence 222322333456788999888776543 456789999999999999999999999999 6677777664 44 489999
Q ss_pred hhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 264 LLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 264 L~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
++|||+++.|.+++.+++..+|.. ++ ++++....++..+ |+++.++.+++
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~---------------~g--i~~~~~~~l~~~~-g~~~~A~~l~~ 206 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQE---------------EG--ISESLATLLAGLT-NSVEEALALSE 206 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHH---------------cC--CChHHHHHHHHHc-CCHHHHHHHhc
Confidence 999999999999999999777753 22 4556566666664 78888887765
No 110
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.75 E-value=2.2e-17 Score=169.65 Aligned_cols=196 Identities=22% Similarity=0.239 Sum_probs=147.1
Q ss_pred cccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHH-HHHH--
Q 008664 136 VVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAV-EDAR-- 209 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~-~~~~-- 209 (558)
++|+...+ ..+.+.+..- ...++||+|++||||+++|++|+.... ...+|+.++|.......+...+ ....
T Consensus 1 liG~S~~m---~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAF---LEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHH---HHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcccccc
Confidence 35666555 4444444332 236799999999999999999998875 4579999999876554443322 1110
Q ss_pred --------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCC-----CCCCcHH
Q 008664 210 --------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENP-----SFHLITP 263 (558)
Q Consensus 210 --------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~-----~~~l~~a 263 (558)
........+++||||||+.|+...|..|+.+++++. +.+|++|+.+. ...+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 001123367899999999999999999999998754 57888887654 2356688
Q ss_pred hhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcc-cccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHh
Q 008664 264 LLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTR-VEVNHDAIEFLCSN-CDGDARVALNALEISAITA 337 (558)
Q Consensus 264 L~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~-~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a 337 (558)
|..|+ ..|.++||.+ +|+..++..++.++...+ +... ..+++++++.|..+ |+||+|++.|++++++..+
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~----~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL----GLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh----CCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 88998 4788999995 899999999888766544 3233 67999999999999 9999999999999999876
Q ss_pred c
Q 008664 338 A 338 (558)
Q Consensus 338 ~ 338 (558)
.
T Consensus 234 ~ 234 (329)
T TIGR02974 234 G 234 (329)
T ss_pred C
Confidence 4
No 111
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.74 E-value=5.1e-17 Score=173.85 Aligned_cols=207 Identities=19% Similarity=0.199 Sum_probs=147.8
Q ss_pred CCCCCccccccccCCchHHHHHHHHc----------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc----
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS----------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT---- 195 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~----------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~---- 195 (558)
..+|++|.|.+..+ ..+...... ..+.++||+||||||||++|+++|++++ .+++.+++..
T Consensus 224 ~~~~~dvgGl~~lK---~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~~~l~~~~l~~~ 298 (489)
T CHL00195 224 NEKISDIGGLDNLK---DWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPLLRLDVGKLFGG 298 (489)
T ss_pred CCCHHHhcCHHHHH---HHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEEEhHHhccc
Confidence 34788999987665 444332111 2247899999999999999999999999 8888887643
Q ss_pred ---ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH------------HHHHHHHhhHhc--CcEEEEeccCCCCCC
Q 008664 196 ---SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK------------SQQDSFLPVIED--GSIVFIGATTENPSF 258 (558)
Q Consensus 196 ---~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~------------~~~~~Ll~~le~--~~iilI~att~n~~~ 258 (558)
.+...+++++..+... .++||||||||.+.. .....|+.+|++ ..+.+|++| |...
T Consensus 299 ~vGese~~l~~~f~~A~~~-----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT--N~~~ 371 (489)
T CHL00195 299 IVGESESRMRQMIRIAEAL-----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA--NNID 371 (489)
T ss_pred ccChHHHHHHHHHHHHHhc-----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec--CChh
Confidence 2456678888776543 789999999997633 123456777765 345566555 5556
Q ss_pred CCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 008664 259 HLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNALEISA 334 (558)
Q Consensus 259 ~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~Le~a~ 334 (558)
.+++++++ || .++.++.|+.++..+|++..+.+.. ....++..++.|++.+.| ....+.+++..+.
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~----------~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR----------PKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC----------CCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 89999987 77 4888999999999999999987611 111234457888888766 5566666666666
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccc
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHL 379 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~ 379 (558)
..+..+ ...+|.+++..++.....
T Consensus 442 ~~A~~~---------------------~~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 442 YIAFYE---------------------KREFTTDDILLALKQFIP 465 (489)
T ss_pred HHHHHc---------------------CCCcCHHHHHHHHHhcCC
Confidence 655431 346999999999887543
No 112
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.74 E-value=8.5e-17 Score=174.04 Aligned_cols=198 Identities=20% Similarity=0.266 Sum_probs=150.4
Q ss_pred CCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHH
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVED 207 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~ 207 (558)
.+|++++|+...+ ..+.+.++. ....++||+|++||||+++|+.|++... .+.+|+.++|.......+...+..
T Consensus 209 ~~f~~iiG~S~~m---~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPM---EQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHH---HHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcC
Confidence 5688999999887 666666643 2337899999999999999999998764 457999999987765444332211
Q ss_pred HH------------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCCC----
Q 008664 208 AR------------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPSF---- 258 (558)
Q Consensus 208 ~~------------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~~---- 258 (558)
.. ........+++||||||+.|+...|..|+.+++++. +.+|++|+.+...
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~ 365 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhh
Confidence 00 001112357899999999999999999999998754 3688888765432
Q ss_pred -CCcHHhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHH-------HHHh-CCCCHHH
Q 008664 259 -HLITPLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEF-------LCSN-CDGDARV 325 (558)
Q Consensus 259 -~l~~aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~-------La~~-s~Gd~R~ 325 (558)
.+.+.|..|+ ..+.++||.+ +|+..++..++.++... .++.++++++.. |.++ |+||+|+
T Consensus 366 g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~-------~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrE 438 (526)
T TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAA-------LRLPDSEAAAQVLAGVADPLQRYPWPGNVRE 438 (526)
T ss_pred cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHH-------cCCCCCHHHHHHhHHHHHHHHhCCCCchHHH
Confidence 3455677776 4788999987 89999999998875543 245689999887 8777 9999999
Q ss_pred HHHHHHHHHHHhc
Q 008664 326 ALNALEISAITAA 338 (558)
Q Consensus 326 ~~~~Le~a~~~a~ 338 (558)
+.|++++++....
T Consensus 439 L~nvier~~i~~~ 451 (526)
T TIGR02329 439 LRNLVERLALELS 451 (526)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988753
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.74 E-value=7.9e-17 Score=171.12 Aligned_cols=212 Identities=21% Similarity=0.291 Sum_probs=143.4
Q ss_pred CCCcc-ccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccccHHHHHHHH
Q 008664 132 NINDV-VGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTSGVKDVRDAV 205 (558)
Q Consensus 132 ~~~dv-iGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~~~~~i~~~~ 205 (558)
+|+++ +|..... ....+..+.... ..++++||||+|+|||+|++++++++.. ...++.+++......-+..+.
T Consensus 108 tfd~fi~g~~n~~-a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~ 186 (405)
T TIGR00362 108 TFDNFVVGKSNRL-AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALR 186 (405)
T ss_pred cccccccCCcHHH-HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHH
Confidence 56664 4654432 123344444332 2357899999999999999999998731 356777776433211111111
Q ss_pred HH-HHHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHhc----CcEEEEeccCCCCC--CCCcHHhhccc---ceeec
Q 008664 206 ED-ARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIED----GSIVFIGATTENPS--FHLITPLLSRC---RVLTL 273 (558)
Q Consensus 206 ~~-~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le~----~~iilI~att~n~~--~~l~~aL~sR~---~~i~~ 273 (558)
.. ............+|+|||+|.+.. ..++.|+..++. +..++|. ++..|. ..+.+.+.||+ .++.|
T Consensus 187 ~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiit-s~~~p~~l~~l~~~l~SRl~~g~~v~i 265 (405)
T TIGR00362 187 NNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLT-SDRPPKELPGLEERLRSRFEWGLVVDI 265 (405)
T ss_pred cCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEe-cCCCHHHHhhhhhhhhhhccCCeEEEe
Confidence 00 000001112457999999998864 346667766643 4444443 332232 24678899998 47999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~ 353 (558)
.+++.+++..+|+..+.. .++.++++++++|++.+.||+|.+...|..+...+...
T Consensus 266 ~~pd~~~r~~il~~~~~~-----------~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~------------- 321 (405)
T TIGR00362 266 EPPDLETRLAILQKKAEE-----------EGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLT------------- 321 (405)
T ss_pred CCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-------------
Confidence 999999999999999887 78899999999999999999999999999998776541
Q ss_pred cCCCCCCCccccCHHHHHHHHhhc
Q 008664 354 ESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 354 ~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+..||.+.+++++...
T Consensus 322 --------~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 322 --------GKPITLELAKEALKDL 337 (405)
T ss_pred --------CCCCCHHHHHHHHHHh
Confidence 3468988888888753
No 114
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.74 E-value=1e-16 Score=174.72 Aligned_cols=201 Identities=19% Similarity=0.256 Sum_probs=154.9
Q ss_pred CCCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHH-HHHH
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRD-AVED 207 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~-~~~~ 207 (558)
.+.+++|+...+ ..+.+.+..- ...+++|+|++||||+++|++|+.... .+.+|+.++|.......+.. +|..
T Consensus 185 ~~~~iig~s~~~---~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAM---QQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGH 261 (509)
T ss_pred cCCceeecCHHH---HHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCc
Confidence 567899998887 6666665542 237899999999999999999999875 45789999998775443332 2221
Q ss_pred HHH----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CC
Q 008664 208 ARK----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FH 259 (558)
Q Consensus 208 ~~~----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~ 259 (558)
... .......+++||||||+.|+...|..|+.+++++. +.+|++|+.+.. ..
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 100 01123467899999999999999999999998743 578888866542 34
Q ss_pred CcHHhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 008664 260 LITPLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISA 334 (558)
Q Consensus 260 l~~aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~ 334 (558)
+...|..|+. .|.++||.+ +|+..++..++.++...+ +...+.+++++++.|.++ |+||+|++.|.+++++
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~----~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~ 417 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARL----GLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAA 417 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 6778888874 588999987 889999999988866554 446678999999999999 9999999999999999
Q ss_pred HHhcc
Q 008664 335 ITAAV 339 (558)
Q Consensus 335 ~~a~~ 339 (558)
..+..
T Consensus 418 ~~~~~ 422 (509)
T PRK05022 418 LLARA 422 (509)
T ss_pred HhcCC
Confidence 88754
No 115
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.73 E-value=1e-16 Score=179.94 Aligned_cols=263 Identities=17% Similarity=0.236 Sum_probs=185.4
Q ss_pred CCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHH-HHHH
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVR-DAVE 206 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~-~~~~ 206 (558)
.+|++++|.+..+ ..+.+.+.. ....+++|+|++||||+++|++|++... ...+|+.++|.....+.+. ++|.
T Consensus 322 ~~~~~l~g~s~~~---~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQM---RRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG 398 (638)
T ss_pred ccccceEECCHHH---HHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcC
Confidence 3689999998777 444444433 2236799999999999999999999875 4579999999887654443 2333
Q ss_pred HH---HH----hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCCc
Q 008664 207 DA---RK----LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHLI 261 (558)
Q Consensus 207 ~~---~~----~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l~ 261 (558)
.. .. .......+++||||||+.|+...|..|+.+++++. +.+|++|+.+.. ..+.
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~ 478 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFS 478 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCCh
Confidence 11 00 00113467899999999999999999999998753 568888876542 3456
Q ss_pred HHhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Q 008664 262 TPLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAIT 336 (558)
Q Consensus 262 ~aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~ 336 (558)
+.|..|+. .|.++||.+ +|+..++..++.++...+ + ..+.+++++++.|.++ |+||+|++.|+++.++..
T Consensus 479 ~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~----~-~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 479 RQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF----S-TRLKIDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh----C-CCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 67777774 678999987 789999999998765443 2 2367999999999999 999999999999999876
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~ 416 (558)
+.. ..|+.+++...+.......+. . ... +.
T Consensus 554 ~~~-----------------------~~i~~~~lp~~~~~~~~~~~~-~---------------~~~-----------~~ 583 (638)
T PRK11388 554 SDN-----------------------GRIRLSDLPEHLFTEQATDDV-S---------------ATR-----------LS 583 (638)
T ss_pred CCC-----------------------CeecHHHCchhhhcccccccc-c---------------ccc-----------cc
Confidence 532 368888876655321000000 0 000 00
Q ss_pred CCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCch
Q 008664 417 GGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPE 461 (558)
Q Consensus 417 ~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe 461 (558)
.+.....+.|+++..|.++.|. +..+||++|||+-
T Consensus 584 ~~~~l~~~E~~~i~~al~~~~g----------n~~~aA~~LGisR 618 (638)
T PRK11388 584 TSLSLAELEKEAIINAAQVCGG----------RIQEMAALLGIGR 618 (638)
T ss_pred cchhHHHHHHHHHHHHHHHhCC----------CHHHHHHHHCCCH
Confidence 0011125778888888777766 6789999999864
No 116
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-16 Score=174.55 Aligned_cols=207 Identities=17% Similarity=0.267 Sum_probs=172.8
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEE
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFV 189 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i 189 (558)
......+++..|-..+|.+||+++.+ ..+.+.+.+.+.++.+|.|+||+|||.++..+|.... .+..++
T Consensus 154 ~~y~~dlt~~Ar~gklDPvIGRd~EI---~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 154 EKYTRDLTELAREGKLDPVIGRDEEI---RRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHHhhhhHHHHhcCCCCCCcChHHHH---HHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 33456788899999999999999999 9999999999999999999999999999999999984 234555
Q ss_pred EEeccc--c-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC---------HHHHHHHHhhHhcCcEEEEec
Q 008664 190 CLSAVT--S-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN---------KSQQDSFLPVIEDGSIVFIGA 251 (558)
Q Consensus 190 ~l~~~~--~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~---------~~~~~~Ll~~le~~~iilI~a 251 (558)
.++-.. . -++.++.++++.... .+.||||||||.+- -+..|.|.+.+..|.+.+|||
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~-----~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGA 305 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKS-----KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGA 305 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcC-----CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEe
Confidence 554322 1 245677777776543 48899999999872 346789999999999999999
Q ss_pred cCCCCC---CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------C
Q 008664 252 TTENPS---FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------D 322 (558)
Q Consensus 252 tt~n~~---~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d 322 (558)
||.+.+ +.-+++|-+||+.+.+..|+.++...||+..-.+|+.+ +++.++++|+...+.+|.. -
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~h-------H~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAH-------HGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHc-------cCceecHHHHHHHHHHHHhhcccCCC
Confidence 998765 45679999999999999999999999999998887776 6899999999999887543 5
Q ss_pred HHHHHHHHHHHHHHhcc
Q 008664 323 ARVALNALEISAITAAV 339 (558)
Q Consensus 323 ~R~~~~~Le~a~~~a~~ 339 (558)
+..++.+++.++.....
T Consensus 379 PDKAIDLiDeA~a~~~l 395 (786)
T COG0542 379 PDKAIDLLDEAGARVRL 395 (786)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 78899999999987665
No 117
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=1.8e-16 Score=166.16 Aligned_cols=204 Identities=23% Similarity=0.322 Sum_probs=147.4
Q ss_pred CCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
..+++||.|.+..+ ..++.++.. ..+.++||+||||||||++|+++|+.++ ..|+.+.+...
T Consensus 141 ~v~~~digGl~~~k---~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~fi~i~~s~l 215 (398)
T PTZ00454 141 DVTYSDIGGLDIQK---QEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATFIRVVGSEF 215 (398)
T ss_pred CCCHHHcCCHHHHH---HHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHH
Confidence 45789999998887 777766642 1247899999999999999999999998 78888876432
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHH---HhhHhc----CcEEEEec
Q 008664 197 -------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSF---LPVIED----GSIVFIGA 251 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~L---l~~le~----~~iilI~a 251 (558)
+...+++++..+.. ..++||||||+|.+.. ..+..+ +..++. ..+.+|++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~-----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a 290 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 290 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHh-----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 33445666665543 3689999999997632 233334 444443 45778887
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVAL 327 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~ 327 (558)
| |....+++++++ |+ ..|.|++|+.++...|++..+.+ .++. .+-.+..++..+.| +...+.
T Consensus 291 T--N~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-----------~~l~-~dvd~~~la~~t~g~sgaDI~ 356 (398)
T PTZ00454 291 T--NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-----------MNLS-EEVDLEDFVSRPEKISAADIA 356 (398)
T ss_pred c--CCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-----------CCCC-cccCHHHHHHHcCCCCHHHHH
Confidence 7 566799999987 66 47899999999999999977754 2222 12236677777655 677788
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+++..+...+..+ + ...|+.+|+.+++.+.
T Consensus 357 ~l~~eA~~~A~r~-------------~-------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 357 AICQEAGMQAVRK-------------N-------RYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHHHHc-------------C-------CCccCHHHHHHHHHHH
Confidence 8888887766442 2 3579999999988764
No 118
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.1e-17 Score=176.43 Aligned_cols=208 Identities=24% Similarity=0.298 Sum_probs=160.2
Q ss_pred CCCCCccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc----
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---- 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---- 196 (558)
+.+|+||.|.++++.+...+...+++.. ++.+||+||||||||.||+++|.+.+ .+|+.++++..
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSVSGSEFVEMF 384 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--CceeeechHHHHHHh
Confidence 3589999999999855555555555532 47899999999999999999999999 99999998765
Q ss_pred ---cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH---------------HHHHHHhhHhc----CcEEEEeccCC
Q 008664 197 ---GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS---------------QQDSFLPVIED----GSIVFIGATTE 254 (558)
Q Consensus 197 ---~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~---------------~~~~Ll~~le~----~~iilI~att~ 254 (558)
+...++.+|..++.. .++||||||||.+... ..+.||.-|+. +.++++++|
T Consensus 385 ~g~~asrvr~lf~~ar~~-----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~t-- 457 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKN-----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAAT-- 457 (774)
T ss_pred cccchHHHHHHHHHhhcc-----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEecc--
Confidence 567789999988765 7899999999977432 34566666665 457888877
Q ss_pred CCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCH-HHHHHHH
Q 008664 255 NPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDA-RVALNAL 330 (558)
Q Consensus 255 n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~-R~~~~~L 330 (558)
|...-++++|++ || +.+.+..++.....+|++..+.. .....++..+..|+.++.|.. -.+.|++
T Consensus 458 nr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~-----------~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 458 NRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK-----------KKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc-----------cCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 677789999998 66 58999999999999999988765 444445666666999988854 3456666
Q ss_pred HHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 331 EISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 331 e~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
..+...+..+ + ...|+.+++..++.+.
T Consensus 527 neaa~~a~r~-------------~-------~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 527 NEAALLAARK-------------G-------LREIGTKDLEYAIERV 553 (774)
T ss_pred hHHHHHHHHh-------------c-------cCccchhhHHHHHHHH
Confidence 6666555431 2 4679999999998843
No 119
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.72 E-value=9.1e-17 Score=169.45 Aligned_cols=208 Identities=22% Similarity=0.281 Sum_probs=147.3
Q ss_pred hhhcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 125 ~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++..+.+|+||.|.+..+ ..+..++.. ....++||+||||||||++|+++|+.+. ..|+.+
T Consensus 174 ~~~~p~~~~~DIgGl~~qi---~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~fi~V 248 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQI---QEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATFLRV 248 (438)
T ss_pred cccCCCCCHHHhcCHHHHH---HHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCEEEE
Confidence 4555667999999999888 777776652 1236899999999999999999999998 778887
Q ss_pred ecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhH---h----cCcE
Q 008664 192 SAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVI---E----DGSI 246 (558)
Q Consensus 192 ~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~l---e----~~~i 246 (558)
.++.. +...++.+|..+.. ..++||||||||.+.. ..+..++.++ + ...+
T Consensus 249 ~~seL~~k~~Ge~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 249 VGSELIQKYLGDGPKLVRELFRVAEE-----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred ecchhhhhhcchHHHHHHHHHHHHHh-----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 76543 33345666665543 3678999999997632 2344444444 3 2467
Q ss_pred EEEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh-HHHHHHHHhCCC-
Q 008664 247 VFIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH-DAIEFLCSNCDG- 321 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~-~al~~La~~s~G- 321 (558)
.+|++| |....+++++++ |+ ..|.|++|+.++...|++..+.+ .. +.+ -.++.++..+.|
T Consensus 324 ~VI~AT--Nr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k-----------~~--l~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 324 KVIMAT--NRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK-----------MT--LAEDVDLEEFIMAKDEL 388 (438)
T ss_pred EEEEec--CChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc-----------CC--CCcCcCHHHHHHhcCCC
Confidence 888877 566788999986 66 58999999999999999987654 22 222 234556655433
Q ss_pred CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 322 DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 322 d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+...+.+++..|...+..+ + ...||.+|+.+++.+.
T Consensus 389 sgAdI~~i~~eA~~~Alr~-------------~-------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 389 SGADIKAICTEAGLLALRE-------------R-------RMKVTQADFRKAKEKV 424 (438)
T ss_pred CHHHHHHHHHHHHHHHHHh-------------c-------CCccCHHHHHHHHHHH
Confidence 5566666777777665431 2 4579999999998864
No 120
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.72 E-value=1.3e-16 Score=163.95 Aligned_cols=200 Identities=21% Similarity=0.234 Sum_probs=151.1
Q ss_pred CCCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHH-HH
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAV-ED 207 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~-~~ 207 (558)
.+++++|.+..+ ..+.+.+..- ...+++|+|++||||+++|+.|+.... ...+|+.++|.......+...+ ..
T Consensus 4 ~~~~liG~S~~~---~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~ 80 (326)
T PRK11608 4 YKDNLLGEANSF---LEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80 (326)
T ss_pred ccCccEECCHHH---HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccc
Confidence 467799998777 5555555432 236899999999999999999998765 3578999999887654443322 11
Q ss_pred HH----------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCC-----CCC
Q 008664 208 AR----------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENP-----SFH 259 (558)
Q Consensus 208 ~~----------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~-----~~~ 259 (558)
.. ........+++||||||+.|+...|..|+.+++++. +.+|++|+.+. ...
T Consensus 81 ~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 10 000123467899999999999999999999998743 67888776553 245
Q ss_pred CcHHhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcc-cccChHHHHHHHHh-CCCCHHHHHHHHHHH
Q 008664 260 LITPLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTR-VEVNHDAIEFLCSN-CDGDARVALNALEIS 333 (558)
Q Consensus 260 l~~aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~-~~i~~~al~~La~~-s~Gd~R~~~~~Le~a 333 (558)
+.+.|..|+ ..|.++||.+ +|+..++..++.++...+ +... ..++++++..|.++ |+||+|++.++++.+
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~----~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a 236 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL----GLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 678888888 4788999987 889999998887765544 2222 47999999999999 999999999999999
Q ss_pred HHHhc
Q 008664 334 AITAA 338 (558)
Q Consensus 334 ~~~a~ 338 (558)
+..+.
T Consensus 237 ~~~~~ 241 (326)
T PRK11608 237 VYRHG 241 (326)
T ss_pred HHhcC
Confidence 88654
No 121
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=5.1e-17 Score=167.35 Aligned_cols=199 Identities=24% Similarity=0.346 Sum_probs=154.8
Q ss_pred CCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHH-----
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRD----- 203 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~----- 203 (558)
.+.++||+...+ ..+.+.++. ..-.++||.|++||||..+|++|++... .+.+|+.+||......-+..
T Consensus 221 ~~~~iIG~S~am---~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAM---RQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH 297 (550)
T ss_pred ccccceecCHHH---HHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcc
Confidence 567899998887 555555432 2236799999999999999999999986 45789999997764433322
Q ss_pred ---HHHHHHHh---hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CC
Q 008664 204 ---AVEDARKL---RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FH 259 (558)
Q Consensus 204 ---~~~~~~~~---~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~ 259 (558)
.|..+... ......++.||+|||..|+...|..||.+++++. +.+|+||+.|.. .+
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~ 377 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGE 377 (550)
T ss_pred cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCc
Confidence 22222111 1122468899999999999999999999998743 679999966542 34
Q ss_pred CcHHhhcccce--eeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 008664 260 LITPLLSRCRV--LTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISA 334 (558)
Q Consensus 260 l~~aL~sR~~~--i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~ 334 (558)
+...|..|..+ +.++|+.+ +|+.-+...++++.+..+ |...+.+++++++.|.++ |+||+|.+.|++++++
T Consensus 378 FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~----gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRav 453 (550)
T COG3604 378 FRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL----GRAILSLSAEALELLSSYEWPGNVRELENVVERAV 453 (550)
T ss_pred chhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhc----CCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 55677788865 55788876 889999999998877776 667899999999999999 9999999999999999
Q ss_pred HHh
Q 008664 335 ITA 337 (558)
Q Consensus 335 ~~a 337 (558)
..+
T Consensus 454 lla 456 (550)
T COG3604 454 LLA 456 (550)
T ss_pred HHh
Confidence 987
No 122
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=3.9e-16 Score=160.19 Aligned_cols=167 Identities=21% Similarity=0.294 Sum_probs=134.6
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC----------------------CceEEEEec----ccccHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV----------------------SYKFVCLSA----VTSGVK 199 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~----------------------~~~~i~l~~----~~~~~~ 199 (558)
+.+.+.+..++. +.+||+||+|+||+++|..+|+.+.| +.++..+.. ...+++
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~id 91 (334)
T PRK07993 12 EQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVD 91 (334)
T ss_pred HHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHH
Confidence 678888888776 67889999999999999999999853 123444432 235789
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCC
Q 008664 200 DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277 (558)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~ 277 (558)
++|++.+...... ..+...|+|||++|+|+...+|.||+.||+ +..+||..|. + ...+.++++|||+.+.|++++
T Consensus 92 qiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~-~-~~~lLpTIrSRCq~~~~~~~~ 168 (334)
T PRK07993 92 AVREVTEKLYEHA-RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACR-E-PARLLATLRSRCRLHYLAPPP 168 (334)
T ss_pred HHHHHHHHHhhcc-ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEEC-C-hhhChHHHHhccccccCCCCC
Confidence 9999888876554 557889999999999999999999999999 5666776663 3 348999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHH
Q 008664 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332 (558)
Q Consensus 278 ~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~ 332 (558)
.+++..+|... ..++++....+++.++|++..++.+++.
T Consensus 169 ~~~~~~~L~~~----------------~~~~~~~a~~~~~la~G~~~~Al~l~~~ 207 (334)
T PRK07993 169 EQYALTWLSRE----------------VTMSQDALLAALRLSAGAPGAALALLQP 207 (334)
T ss_pred HHHHHHHHHHc----------------cCCCHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 99999988641 1356677788899999999999888753
No 123
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.72 E-value=7.1e-16 Score=168.18 Aligned_cols=203 Identities=20% Similarity=0.190 Sum_probs=152.7
Q ss_pred CCCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHH-H
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDA-V 205 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~-~ 205 (558)
..+|++++|.+..+ ..+...+++ ....+++|+|++||||+++|++++.... ...+|+.++|.......+... |
T Consensus 200 ~~~f~~~ig~s~~~---~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elF 276 (520)
T PRK10820 200 DSAFSQIVAVSPKM---RQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELF 276 (520)
T ss_pred cccccceeECCHHH---HHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhc
Confidence 45889999998876 545444432 2236799999999999999999998765 336899999987765444332 2
Q ss_pred HHHH----------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----
Q 008664 206 EDAR----------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS----- 257 (558)
Q Consensus 206 ~~~~----------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~----- 257 (558)
.... ........+++||||||+.|+...|..|+.+++++. +.+|++|+.+..
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~ 356 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 356 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHc
Confidence 1110 000112357899999999999999999999998742 578888776642
Q ss_pred CCCcHHhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHH
Q 008664 258 FHLITPLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEI 332 (558)
Q Consensus 258 ~~l~~aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~ 332 (558)
..+.+.|..|+ ..+.++||.+ +|+..++..++.++.... +.....+++++++.|..+ |+||+|++.|++++
T Consensus 357 g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~----g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~ 432 (520)
T PRK10820 357 GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQ----GVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYR 432 (520)
T ss_pred CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHc----CCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34667788886 4788999987 789988888888765544 334568999999999999 99999999999999
Q ss_pred HHHHhcc
Q 008664 333 SAITAAV 339 (558)
Q Consensus 333 a~~~a~~ 339 (558)
++..+..
T Consensus 433 a~~~~~~ 439 (520)
T PRK10820 433 ALTQLEG 439 (520)
T ss_pred HHHhCCC
Confidence 9887643
No 124
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.72 E-value=5.9e-17 Score=185.59 Aligned_cols=192 Identities=21% Similarity=0.306 Sum_probs=138.8
Q ss_pred CccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEeccccc------
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSG------ 197 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~------ 197 (558)
+.|+||++++ ..+..++...+ ..++||+||+|||||++|+++|+.+.+ ...++.++.+...
T Consensus 509 ~~v~GQ~~ai---~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAV---VAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHH---HHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 5699999998 88877776432 246899999999999999999999852 3466666654321
Q ss_pred -----------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccC
Q 008664 198 -----------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATT 253 (558)
Q Consensus 198 -----------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att 253 (558)
.++...+.+..+ ..+++||||||+|.++++.++.|++++++|. .++|++|+
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~-----~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVR-----KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHH-----hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 111222333332 2367999999999999999999999999854 34555543
Q ss_pred CCC----------CC-------------------------CCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccc
Q 008664 254 ENP----------SF-------------------------HLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLS 297 (558)
Q Consensus 254 ~n~----------~~-------------------------~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~ 297 (558)
-.. .+ .+.|+|++|+ .++.|.|++.+++..|+...+.+....+.
T Consensus 661 ~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~ 740 (821)
T CHL00095 661 LGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLN 740 (821)
T ss_pred cchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 210 00 1346899999 79999999999999999999987655542
Q ss_pred cccCCcccccChHHHHHHHHhC---CCCHHHHHHHHHHHHH
Q 008664 298 KSVGGTRVEVNHDAIEFLCSNC---DGDARVALNALEISAI 335 (558)
Q Consensus 298 ~~~~~~~~~i~~~al~~La~~s---~Gd~R~~~~~Le~a~~ 335 (558)
. .+-.+.++++++++|++.. .-.+|.+.+.++....
T Consensus 741 ~--~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 741 E--QGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred H--CCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 1 1346889999999999972 3357888877776654
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=4.4e-17 Score=185.90 Aligned_cols=194 Identities=20% Similarity=0.330 Sum_probs=141.9
Q ss_pred CccccccccCCchHHHHHHHHcC--------CC-CeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccH-----
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSN--------RL-PSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGV----- 198 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~--------~~-~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~----- 198 (558)
..|+||++++ ..+.+++... ++ .++||+||||||||.+|+++|+.+.. ...++.++++....
T Consensus 566 ~~v~GQ~~Av---~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHAL---EAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHH---HHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 5689999998 7777777542 12 46999999999999999999999842 24667777543211
Q ss_pred ------------HHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccC
Q 008664 199 ------------KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATT 253 (558)
Q Consensus 199 ------------~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att 253 (558)
.+-..+.+..+ ..+++||+||||+.++++.++.|++++++|. .++|++|+
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~-----~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVR-----RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred cccCCCCCcccccccchHHHHHH-----hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 11111222222 2478999999999999999999999998753 34555543
Q ss_pred C----------CCC-----------------CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccc
Q 008664 254 E----------NPS-----------------FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVE 306 (558)
Q Consensus 254 ~----------n~~-----------------~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~ 306 (558)
- +.. ..+.|+|++|+.+|.|.|++.+++..|+...+.+....+.+.. +..+.
T Consensus 718 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~-gi~l~ 796 (852)
T TIGR03345 718 AGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENH-GAELV 796 (852)
T ss_pred CchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhc-CceEE
Confidence 1 000 1266889999999999999999999999999887554432111 24578
Q ss_pred cChHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 008664 307 VNHDAIEFLCSNCDG---DARVALNALEISAIT 336 (558)
Q Consensus 307 i~~~al~~La~~s~G---d~R~~~~~Le~a~~~ 336 (558)
++++++++|++.+.+ ++|.+.+.|+..+..
T Consensus 797 i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~ 829 (852)
T TIGR03345 797 YSEALVEHIVARCTEVESGARNIDAILNQTLLP 829 (852)
T ss_pred ECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 999999999999776 899999999886543
No 126
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.72 E-value=4e-16 Score=168.60 Aligned_cols=198 Identities=21% Similarity=0.225 Sum_probs=146.5
Q ss_pred CCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHH--------hC-CCceEEEEecccccHH
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNS--------VA-VSYKFVCLSAVTSGVK 199 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~--------l~-~~~~~i~l~~~~~~~~ 199 (558)
.+|++++|++..+ ..+.+.+.. ....++||+|++||||+++|+.|++. .. .+.+|+.+||......
T Consensus 216 ~~f~~iiG~S~~m---~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~ 292 (538)
T PRK15424 216 YVLGDLLGQSPQM---EQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES 292 (538)
T ss_pred cchhheeeCCHHH---HHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh
Confidence 3688999999887 666666643 23368999999999999999999997 32 4579999999877654
Q ss_pred HHHHHHHHHH------------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCC
Q 008664 200 DVRDAVEDAR------------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTE 254 (558)
Q Consensus 200 ~i~~~~~~~~------------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~ 254 (558)
.+...+.... ........+++||||||+.|+...|..|+.+++++. +.+|++|+.
T Consensus 293 lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~ 372 (538)
T PRK15424 293 LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 372 (538)
T ss_pred hHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCC
Confidence 4433221100 001123457899999999999999999999998754 368888876
Q ss_pred CCC-----CCCcHHhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHH-------HHHHHh
Q 008664 255 NPS-----FHLITPLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAI-------EFLCSN 318 (558)
Q Consensus 255 n~~-----~~l~~aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al-------~~La~~ 318 (558)
+.. ..+.+.|..|+ ..+.++||.+ +|+..++..++.++...+ +..++++++ +.|..+
T Consensus 373 ~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~a~~~~~~a~~~L~~y 445 (538)
T PRK15424 373 DLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL-------SAPFSAALRQGLQQCETLLLHY 445 (538)
T ss_pred CHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc-------CCCCCHHHHHhhHHHHHHHHhC
Confidence 643 23556677776 4788999987 899999999888754332 333565555 667777
Q ss_pred -CCCCHHHHHHHHHHHHHHhc
Q 008664 319 -CDGDARVALNALEISAITAA 338 (558)
Q Consensus 319 -s~Gd~R~~~~~Le~a~~~a~ 338 (558)
|+||+|++.|++++++....
T Consensus 446 ~WPGNvREL~nvier~~i~~~ 466 (538)
T PRK15424 446 DWPGNVRELRNLMERLALFLS 466 (538)
T ss_pred CCCchHHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 127
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=6.6e-17 Score=166.39 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=155.8
Q ss_pred CCCCCccccccccCCchHHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEecccccHHHHH-HH
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAVTSGVKDVR-DA 204 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~~~~~~~~i~-~~ 204 (558)
...++++||.+... ..+++.++.-.+ .++|++|++||||+.+|+.|+..... ..+|+.+||......-.. ++
T Consensus 74 ~~~~~~LIG~~~~~---~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 74 SEALDDLIGESPSL---QELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred chhhhhhhccCHHH---HHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHH
Confidence 34678899998776 666666665322 68999999999999999999966543 689999999766433221 12
Q ss_pred HHHHHH----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCCCCCc
Q 008664 205 VEDARK----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPSFHLI 261 (558)
Q Consensus 205 ~~~~~~----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~~~l~ 261 (558)
|...+- .......+++||+|||++|....|..|+.+||+|. +.+|+||+++....+.
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred hccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 221111 01123368999999999999999999999999853 6799999999887777
Q ss_pred H--Hhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 008664 262 T--PLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISA 334 (558)
Q Consensus 262 ~--aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~ 334 (558)
. .|.+|+ ..|.++|+.+ +|+..++...+..+...+ +......+++++..|..+ |.||+|++.|.+++++
T Consensus 231 ~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l----~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 231 AGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL----GLPLSVDSPEALRALLAYDWPGNIRELKNLVERAV 306 (403)
T ss_pred hhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 7 888866 4788999987 889999999988877665 223334445888888887 9999999999999999
Q ss_pred HHhcc
Q 008664 335 ITAAV 339 (558)
Q Consensus 335 ~~a~~ 339 (558)
..+..
T Consensus 307 ~~~~~ 311 (403)
T COG1221 307 AQASG 311 (403)
T ss_pred HHhcc
Confidence 98864
No 128
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-16 Score=169.85 Aligned_cols=240 Identities=21% Similarity=0.331 Sum_probs=159.1
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHcC------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.+-+..-.+++||-|-++++ ..+..-|... +-.++|||||||||||.+|+++|-++. ..|+.+
T Consensus 662 GAPKIPnV~WdDVGGLeevK---~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--L~FlSV 736 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVK---TEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--LNFLSV 736 (953)
T ss_pred CCCCCCccchhcccCHHHHH---HHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--eeEEee
Confidence 34445556889999988887 7777766652 125799999999999999999999988 899888
Q ss_pred ecc-------cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH-------------HHHHHHhhHhc------Cc
Q 008664 192 SAV-------TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-------------QQDSFLPVIED------GS 245 (558)
Q Consensus 192 ~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-------------~~~~Ll~~le~------~~ 245 (558)
... ..+++.+|++|+.++.. .++|||+||+|.+.+. ....||.-|+. ..
T Consensus 737 KGPELLNMYVGqSE~NVR~VFerAR~A-----~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 737 KGPELLNMYVGQSEENVREVFERARSA-----APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred cCHHHHHHHhcchHHHHHHHHHHhhcc-----CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 653 34788999999999765 8999999999999652 45677777765 34
Q ss_pred EEEEeccCCCCCCCCcHHhhc--ccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCC-
Q 008664 246 IVFIGATTENPSFHLITPLLS--RCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCD- 320 (558)
Q Consensus 246 iilI~att~n~~~~l~~aL~s--R~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~- 320 (558)
+.+|||| |..+.++++|++ ||. .+.+.+....+-+.-+-+++.+ ...++++ .+..||+.|+
T Consensus 812 VFViGAT--NRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr------------kFkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 812 VFVIGAT--NRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR------------KFKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred eEEEecC--CCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH------------HccCCCCcCHHHHHhhCCc
Confidence 7888998 778899999998 674 6677777665555544445443 2333332 2667777744
Q ss_pred ----CCHHHHHHHHHHHHHHhcccCC-ccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHH
Q 008664 321 ----GDARVALNALEISAITAAVRVP-VKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISA 394 (558)
Q Consensus 321 ----Gd~R~~~~~Le~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isa 394 (558)
.|+-.+.. -|...+..+.. .-+...+.++ ..+.....|+.+|+-+.+.+-.......+..+|+.+.+
T Consensus 878 ~~TGADlYsLCS---dA~l~AikR~i~~ie~g~~~~~----e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~ 949 (953)
T KOG0736|consen 878 NMTGADLYSLCS---DAMLAAIKRTIHDIESGTISEE----EQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRA 949 (953)
T ss_pred CCchhHHHHHHH---HHHHHHHHHHHHHhhhcccccc----ccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 34443332 22222111000 0000000000 00122467999999998888666666666677777654
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.71 E-value=5.5e-16 Score=160.07 Aligned_cols=240 Identities=20% Similarity=0.279 Sum_probs=163.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHHHHHH-HHHhhhhcCCceEEEEeCCccCCHH-
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRDAVED-ARKLRVKSNKRTVLFVDEVHRFNKS- 232 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~il~IDEid~l~~~- 232 (558)
.++++||||+|.|||+|++++++... .+..++.+++.....+.+..+.+. ........ .-.+++||||+.+...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCCh
Confidence 58899999999999999999999875 445677777765544444444332 22223334 6689999999998754
Q ss_pred -HHHHHHhhHh----cCcEEEEecc-CCCCCCCCcHHhhccc---ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCc
Q 008664 233 -QQDSFLPVIE----DGSIVFIGAT-TENPSFHLITPLLSRC---RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGT 303 (558)
Q Consensus 233 -~~~~Ll~~le----~~~iilI~at-t~n~~~~l~~aL~sR~---~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~ 303 (558)
.|..|+.+++ .++.+++.+. +......+.+.|.||+ .++.+.||+.+....+|++.+.. .
T Consensus 192 ~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~-----------~ 260 (408)
T COG0593 192 RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED-----------R 260 (408)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh-----------c
Confidence 4666666654 4554444332 1111223558999998 58999999999999999998877 8
Q ss_pred ccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccC
Q 008664 304 RVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDR 383 (558)
Q Consensus 304 ~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~ 383 (558)
++.++++++.+|++....|+|.+...|+++..++... +..||.+.+++++......-.
T Consensus 261 ~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~---------------------~~~iTi~~v~e~L~~~~~~~~- 318 (408)
T COG0593 261 GIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFT---------------------KRAITIDLVKEILKDLLRAGE- 318 (408)
T ss_pred CCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc---------------------CccCcHHHHHHHHHHhhcccc-
Confidence 9999999999999999999999999999999887652 346888888888875432222
Q ss_pred CCcchHHHHHHHHHHhcCC-------CHHHHHHHHHHHHhCCCChHHHHHHHhhcccccccc
Q 008664 384 AGEEHYNLISALHKSMRGN-------DADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGL 438 (558)
Q Consensus 384 ~~~~~~d~isal~ks~rgs-------d~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigl 438 (558)
. -...+++..+.+...-+ .-...+-+ .|=+. +|++|.+.-...-+||-
T Consensus 319 ~-itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~-~Rqia-----myL~r~lt~~Slp~IG~ 373 (408)
T COG0593 319 K-ITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVR-PRQIA-----MYLARELTNLSLPEIGK 373 (408)
T ss_pred c-CCHHHHHHHHHHHhCCCHHHhhccccccccch-HHHHH-----HHHHHHHccCcHHHHHH
Confidence 1 23344555554432222 11111111 12111 47888888777766664
No 130
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.71 E-value=4.7e-16 Score=164.86 Aligned_cols=221 Identities=20% Similarity=0.310 Sum_probs=153.3
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHH----cCCCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecc
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVC----SNRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAV 194 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~----~~~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~ 194 (558)
.++...+.| +.++|++..+ ..+...+. .....+++|+||||+|||++++.+++.+. ....++.++|.
T Consensus 21 ~~l~~~~~P---~~l~~Re~e~---~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 21 EVLEPDYVP---ENLPHREEQI---EELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred hhCCCCCcC---CCCCCHHHHH---HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 345555555 4578998887 66666653 34557899999999999999999999873 13678888875
Q ss_pred cccH--HHH-------------------HHHHHHHHHhhhhcCCceEEEEeCCccCC----HHHHHHHHhhHhc---CcE
Q 008664 195 TSGV--KDV-------------------RDAVEDARKLRVKSNKRTVLFVDEVHRFN----KSQQDSFLPVIED---GSI 246 (558)
Q Consensus 195 ~~~~--~~i-------------------~~~~~~~~~~~~~~~~~~il~IDEid~l~----~~~~~~Ll~~le~---~~i 246 (558)
.... .-+ .+++..........+.+.||+|||+|.+. .+....|+..++. ..+
T Consensus 95 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v 174 (394)
T PRK00411 95 IDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence 4311 111 12222222222123456799999999986 2344555555543 256
Q ss_pred EEEeccCCC-CCCCCcHHhhccc--ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC---C
Q 008664 247 VFIGATTEN-PSFHLITPLLSRC--RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC---D 320 (558)
Q Consensus 247 ilI~att~n-~~~~l~~aL~sR~--~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s---~ 320 (558)
.+|++++.. ....+++.+.+|+ ..+.|+|++.+++.++++..+.. +.....+++++++.+++.+ .
T Consensus 175 ~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~---------~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 175 GVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE---------GFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred EEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---------hcccCCCCHhHHHHHHHHHHHhc
Confidence 677766432 2234678888887 47899999999999999988754 1123468999999999986 8
Q ss_pred CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 321 GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 321 Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
||+|.++++|..+...+..+ + ...||.+++++++...
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~-------------~-------~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAERE-------------G-------SRKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHc-------------C-------CCCcCHHHHHHHHHHH
Confidence 99999999999988776531 2 3579999999998753
No 131
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.70 E-value=3.6e-16 Score=157.15 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=80.6
Q ss_pred ceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccCCC----------CCCCCcHHhhcccceeeccCCCHHHHHHHHH
Q 008664 218 RTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATTEN----------PSFHLITPLLSRCRVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 218 ~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att~n----------~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~ 286 (558)
++||||||+|.|+-+.+..|.+.+|. -.-++|.+|+.- .++-++..|++||.++...|++.+|+.+||+
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHH
Confidence 78999999999999999999999998 445666666421 1356788999999999999999999999999
Q ss_pred HHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 008664 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISA 334 (558)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~ 334 (558)
..++. +++.+++++++.|.+. ....+|.++++|.-+.
T Consensus 359 iR~~~-----------E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 359 IRAKE-----------EDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHH-----------CT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred hhhhh-----------hcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99998 9999999999999988 6678999999987664
No 132
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.70 E-value=7.1e-17 Score=166.37 Aligned_cols=175 Identities=26% Similarity=0.403 Sum_probs=135.1
Q ss_pred CccccccccCCchHHHHHHHH-cCCCCe-EEEEcCCCchHHHHHHHHHHHhCC----------------------CceEE
Q 008664 134 NDVVGQDHLLSPNSLLRSAVC-SNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV----------------------SYKFV 189 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~-~~~~~~-~LL~GppGtGKTtLa~~la~~l~~----------------------~~~~i 189 (558)
++++|+++.+ ..+..++. .++.++ +||+||||+|||++|.++|+.+.+ +..++
T Consensus 1 ~~~~~~~~~~---~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 1 DELVPWQEAV---KRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CCcccchhHH---HHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 3577888777 77777776 566776 999999999999999999999872 35889
Q ss_pred EEecccccH-----HHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcH
Q 008664 190 CLSAVTSGV-----KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLIT 262 (558)
Q Consensus 190 ~l~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~ 262 (558)
++++++... +.++++........ ..++..|++|||+|.|+.+.+++|++.+|+ ....+|++| |....+.+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~-~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~--n~~~~il~ 154 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP-LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT--NDPSKILP 154 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC-CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc--CChhhccc
Confidence 999877643 33444444332221 235789999999999999999999999998 556677766 45568888
Q ss_pred HhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 263 PLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 263 aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
+++|||+++.|+|++ .+..++.. + ++++..++..+.||+|.+++.++.+...
T Consensus 155 tI~SRc~~i~f~~~~------~~~~i~~~-----------e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 155 TIRSRCQRIRFKPPS------RLEAIAWL-----------E-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhhcceeeecCCch------HHHHHHHh-----------h-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999999933 23333332 2 5778899999999999999999998766
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=2.9e-16 Score=178.52 Aligned_cols=226 Identities=22% Similarity=0.283 Sum_probs=154.4
Q ss_pred CCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT- 195 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~- 195 (558)
..+++++.|.+..+ ..+...+.. ..+.++|||||||||||++|+++|++++ ..|+.+++..
T Consensus 449 ~~~~~di~g~~~~k---~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l 523 (733)
T TIGR01243 449 NVRWSDIGGLEEVK---QELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEI 523 (733)
T ss_pred ccchhhcccHHHHH---HHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHH
Confidence 44788999998887 666666542 1236799999999999999999999999 8888887643
Q ss_pred ------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH------------HHHHHHHhhHhc----CcEEEEeccC
Q 008664 196 ------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK------------SQQDSFLPVIED----GSIVFIGATT 253 (558)
Q Consensus 196 ------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~------------~~~~~Ll~~le~----~~iilI~att 253 (558)
.+...++.+|..++.. .++||||||||.+.+ ...+.|+..|+. ..+++|++|
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~-----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT- 597 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQA-----APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT- 597 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhc-----CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC-
Confidence 2456688888887654 689999999998732 234667777763 567888877
Q ss_pred CCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC-hHHHHHHHHhCCC-CHHHHHH
Q 008664 254 ENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN-HDAIEFLCSNCDG-DARVALN 328 (558)
Q Consensus 254 ~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~-~~al~~La~~s~G-d~R~~~~ 328 (558)
|....+++++++ || .++.+++|+.++..+|++....+ ..++ +..++.|++.+.| ....+.+
T Consensus 598 -n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-------------~~~~~~~~l~~la~~t~g~sgadi~~ 663 (733)
T TIGR01243 598 -NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-------------MPLAEDVDLEELAEMTEGYTGADIEA 663 (733)
T ss_pred -CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-------------CCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 666789999997 88 58899999999999999866533 2222 2347888888776 4455666
Q ss_pred HHHHHHHHhcccCCccch-hhhhccccCCCCCCCccccCHHHHHHHHhhccccccC
Q 008664 329 ALEISAITAAVRVPVKEV-KEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDR 383 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~ 383 (558)
+++.+...+..+...... ..... +.. .......|+.+|+.+++++....+.+
T Consensus 664 ~~~~A~~~a~~~~~~~~~~~~~~~--~~~-~~~~~~~i~~~~f~~al~~~~ps~~~ 716 (733)
T TIGR01243 664 VCREAAMAALRESIGSPAKEKLEV--GEE-EFLKDLKVEMRHFLEALKKVKPSVSK 716 (733)
T ss_pred HHHHHHHHHHHHHhhhccchhhhc--ccc-cccccCcccHHHHHHHHHHcCCCCCH
Confidence 666666544321000000 00000 000 00012469999999999876555544
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.70 E-value=5.7e-16 Score=150.25 Aligned_cols=195 Identities=21% Similarity=0.315 Sum_probs=127.6
Q ss_pred CCCccc-cccccCCchHHHHHHHHcCC--CCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHHHH
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCSNR--LPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRDAV 205 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~~~--~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~~~ 205 (558)
+|+.++ |..+.. ............. ..+++||||+|+|||+|.+++++++. ....++.+++......-...+-
T Consensus 6 tFdnfv~g~~N~~-a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~ 84 (219)
T PF00308_consen 6 TFDNFVVGESNEL-AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALR 84 (219)
T ss_dssp SCCCS--TTTTHH-HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHH
T ss_pred ccccCCcCCcHHH-HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHH
Confidence 677775 654432 1133333333322 36799999999999999999998763 3467777776443221111110
Q ss_pred H-HHHHhhhhcCCceEEEEeCCccCCHHH--HHHHHhhHhc----CcEEEEeccCC-CCCCCCcHHhhccc---ceeecc
Q 008664 206 E-DARKLRVKSNKRTVLFVDEVHRFNKSQ--QDSFLPVIED----GSIVFIGATTE-NPSFHLITPLLSRC---RVLTLN 274 (558)
Q Consensus 206 ~-~~~~~~~~~~~~~il~IDEid~l~~~~--~~~Ll~~le~----~~iilI~att~-n~~~~l~~aL~sR~---~~i~~~ 274 (558)
. .............+|+||++|.+.... |+.|+.+++. +..++|.+... .....+.+.|.||+ .++.+.
T Consensus 85 ~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~ 164 (219)
T PF00308_consen 85 DGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ 164 (219)
T ss_dssp TTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-
T ss_pred cccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcC
Confidence 0 001111123467899999999997654 7788777754 55554444322 22235778999998 489999
Q ss_pred CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008664 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAA 338 (558)
Q Consensus 275 ~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~ 338 (558)
+|+.++...++++.+.. .++.++++++++|++.+.+|+|.+..+|+++..++.
T Consensus 165 ~pd~~~r~~il~~~a~~-----------~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 165 PPDDEDRRRILQKKAKE-----------RGIELPEEVIEYLARRFRRDVRELEGALNRLDAYAQ 217 (219)
T ss_dssp ---HHHHHHHHHHHHHH-----------TT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----------hCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999988 888999999999999999999999999999987753
No 135
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.70 E-value=2.4e-16 Score=169.70 Aligned_cols=210 Identities=19% Similarity=0.311 Sum_probs=142.5
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCC-----CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR-----LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~-----~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
....+|+++|+|++++|++.++..+ ..++.|+.... ...+||+|||||||||+++++|++++ ..+.+...
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv---~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKV---EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHH---HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 4568999999999999999999888 89999987632 25689999999999999999999999 66666532
Q ss_pred -ccc-----c-----------------HHHHHHHHHHHHHhhh-------hcCCceEEEEeCCccCCHH----HHHHHHh
Q 008664 194 -VTS-----G-----------------VKDVRDAVEDARKLRV-------KSNKRTVLFVDEVHRFNKS----QQDSFLP 239 (558)
Q Consensus 194 -~~~-----~-----------------~~~i~~~~~~~~~~~~-------~~~~~~il~IDEid~l~~~----~~~~Ll~ 239 (558)
... . ...+.++.-...+... ...++.||+|||+..+... .++.|.+
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 210 0 0111111011111100 1135789999999875432 3455556
Q ss_pred hHhcC---cEEEEeccCC-----CCC--------CCCcHHhhcc--cceeeccCCCHHHHHHHHHHHHHhHhcccccccC
Q 008664 240 VIEDG---SIVFIGATTE-----NPS--------FHLITPLLSR--CRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG 301 (558)
Q Consensus 240 ~le~~---~iilI~att~-----n~~--------~~l~~aL~sR--~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~ 301 (558)
++..+ .++||.+-++ +.. ..+.+.++.. +..|.|+|....-+.+.|.+++....... .+
T Consensus 159 ~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~---~~ 235 (519)
T PF03215_consen 159 YLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS---SG 235 (519)
T ss_pred HHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh---cC
Confidence 66543 4555555221 111 1355677764 46899999999999999999998732222 01
Q ss_pred CcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 302 GTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 302 ~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
.....-..++++.|++.+.||+|.|++.||.++..
T Consensus 236 ~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 236 KNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred CccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 11222234569999999999999999999999983
No 136
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=2.8e-16 Score=179.05 Aligned_cols=222 Identities=20% Similarity=0.298 Sum_probs=150.5
Q ss_pred ccccccccCCchHHHHHHHHcC------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHH--------
Q 008664 135 DVVGQDHLLSPNSLLRSAVCSN------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVK-------- 199 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~~------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~-------- 199 (558)
+++|++.++ ..+..++... +.++++|+||||||||++|++||+.++ .+++.++.... ...
T Consensus 321 ~~~G~~~~k---~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~--~~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVK---ERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN--RKFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHH---HHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCeEEEeCCCcccHHHHcCCCCc
Confidence 588998887 6766655422 235799999999999999999999998 77877765432 111
Q ss_pred -------HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH----HHHHHhhHhc-----------------CcEEEEec
Q 008664 200 -------DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ----QDSFLPVIED-----------------GSIVFIGA 251 (558)
Q Consensus 200 -------~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~----~~~Ll~~le~-----------------~~iilI~a 251 (558)
.+.+.+..+ .....||||||||.+++.. .+.|+++++. +.++||++
T Consensus 396 ~~g~~~g~i~~~l~~~------~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T 469 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKA------KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT 469 (775)
T ss_pred eeCCCCchHHHHHHHh------CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe
Confidence 122222221 1244599999999997643 4788888763 34666655
Q ss_pred cCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC--CCCHHHHHHH
Q 008664 252 TTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC--DGDARVALNA 329 (558)
Q Consensus 252 tt~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s--~Gd~R~~~~~ 329 (558)
| |....++++|++||.++.|++++.++...|+++.+....... .......+.++++++.+|++.+ ...+|.+.+.
T Consensus 470 t--N~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~-~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~ 546 (775)
T TIGR00763 470 A--NSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALED-HGLKPDELKITDEALLLLIKYYTREAGVRNLERQ 546 (775)
T ss_pred c--CCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHH-cCCCcceEEECHHHHHHHHHhcChhcCChHHHHH
Confidence 5 777789999999999999999999999999988764311110 0012246789999999999873 3478888888
Q ss_pred HHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 330 Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
++..+.....+... ... ...+ ......|+.+++++.++...
T Consensus 547 i~~~~~~~~~~~~~--~~~--~~~~----~~~~v~i~~~~~~~~lg~~~ 587 (775)
T TIGR00763 547 IEKICRKAAVKLVE--QGE--KKKS----EAESVVITPDNLKKYLGKPV 587 (775)
T ss_pred HHHHHHHHHHHHHh--ccC--cccC----CcccccCCHHHHHHhcCccc
Confidence 88887654321000 000 0000 01125799999999988643
No 137
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=1.9e-16 Score=181.99 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=142.7
Q ss_pred CccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHH-H-
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKD-V- 201 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~-i- 201 (558)
..|+||++++ ..+...+...+ ..+++|+||+|||||++|++||+.+.. ...++.++++...... +
T Consensus 565 ~~v~GQ~~av---~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAV---EAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHH---HHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5699999998 88888776532 257999999999999999999998853 3567777765431111 1
Q ss_pred ---------------HHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccC
Q 008664 202 ---------------RDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATT 253 (558)
Q Consensus 202 ---------------~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att 253 (558)
..+.+..+ ..+++|||||||+.++++.++.|++++++|. .++|++|+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~-----~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVR-----RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHH-----cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 11222222 2366899999999999999999999998753 23565553
Q ss_pred CCC-----------------------CCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh
Q 008664 254 ENP-----------------------SFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH 309 (558)
Q Consensus 254 ~n~-----------------------~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~ 309 (558)
... ...+.|+|+.|+ .++.|.|++.+++..|+...+......+... +..+.+++
T Consensus 717 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~--~~~l~i~~ 794 (852)
T TIGR03346 717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER--KITLELSD 794 (852)
T ss_pred cchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC--CCeecCCH
Confidence 311 112457888898 6899999999999999999988655444211 13478999
Q ss_pred HHHHHHHHh-C--CCCHHHHHHHHHHHHHH
Q 008664 310 DAIEFLCSN-C--DGDARVALNALEISAIT 336 (558)
Q Consensus 310 ~al~~La~~-s--~Gd~R~~~~~Le~a~~~ 336 (558)
+++++|++. | .+++|.+.+.++..+..
T Consensus 795 ~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 795 AALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 999999998 5 79999999999987654
No 138
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=8.9e-16 Score=156.05 Aligned_cols=167 Identities=18% Similarity=0.265 Sum_probs=131.8
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC----------------------CceEEEEec---ccccHHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV----------------------SYKFVCLSA---VTSGVKD 200 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~----------------------~~~~i~l~~---~~~~~~~ 200 (558)
..+.+.+..++. +.+||+||+|+||+++|+.+|+.+.| +.+++.+.. ...++++
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~ 91 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQ 91 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHH
Confidence 778888888886 67889999999999999999999863 223444432 2358899
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCH
Q 008664 201 VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~ 278 (558)
+|++.+.....+ ..++..|+|||++|+|+...+|+||+.||+ ..++||.+|+ ++ ..+.++++|||+.+.|.|++.
T Consensus 92 iR~l~~~~~~~~-~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~-~~-~~llpTI~SRC~~~~~~~~~~ 168 (325)
T PRK06871 92 VREINEKVSQHA-QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQAD-LS-AALLPTIYSRCQTWLIHPPEE 168 (325)
T ss_pred HHHHHHHHhhcc-ccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC-Ch-HhCchHHHhhceEEeCCCCCH
Confidence 999888776553 556789999999999999999999999999 5667776653 33 489999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHH
Q 008664 279 HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332 (558)
Q Consensus 279 ~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~ 332 (558)
+++..+|..... .+...+..++..++|.+..++..++.
T Consensus 169 ~~~~~~L~~~~~----------------~~~~~~~~~~~l~~g~p~~A~~~~~~ 206 (325)
T PRK06871 169 QQALDWLQAQSS----------------AEISEILTALRINYGRPLLALTFLEQ 206 (325)
T ss_pred HHHHHHHHHHhc----------------cChHHHHHHHHHcCCCHHHHHHHhhC
Confidence 999999886421 23334567778899999877766543
No 139
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.69 E-value=9.1e-16 Score=166.39 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=151.0
Q ss_pred CCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHH
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDA 208 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~ 208 (558)
.+.+++|....+ ..+.+.+.. ....+++|+|++|||||++|++++.... ...+|+.++|.......+...+...
T Consensus 136 ~~~~lig~s~~~---~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAM---QDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH 212 (469)
T ss_pred ccccceecCHHH---HHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC
Confidence 456788887666 555444432 2236799999999999999999999875 4578999999877554444332111
Q ss_pred HH-----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCC-----CCC
Q 008664 209 RK-----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENP-----SFH 259 (558)
Q Consensus 209 ~~-----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~-----~~~ 259 (558)
.. .......++.||||||+.|+...|..|+.+++++. +.+|++|+.+. ...
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 00 00122356799999999999999999999998754 36788776654 235
Q ss_pred CcHHhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 008664 260 LITPLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISA 334 (558)
Q Consensus 260 l~~aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~ 334 (558)
+.+.|..|+ ..|.++|+.+ +|+..++..++.++...+ +.....++++++..|.++ |+||+|++.|++++++
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~ 368 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAAREL----GVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHc----CCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 678888887 4788899887 899999999988765554 334457999999999999 9999999999999999
Q ss_pred HHhcc
Q 008664 335 ITAAV 339 (558)
Q Consensus 335 ~~a~~ 339 (558)
..+..
T Consensus 369 ~~~~~ 373 (469)
T PRK10923 369 VMAAG 373 (469)
T ss_pred HhCCC
Confidence 87653
No 140
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.68 E-value=8.1e-16 Score=161.06 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=141.0
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
...+++++.|.+..+ +.+..++... .+.++||+||||||||++|+++++.++ ..|+.+.+..
T Consensus 117 p~~~~~di~Gl~~~~---~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~~~v~~~~ 191 (364)
T TIGR01242 117 PNVSYEDIGGLEEQI---REIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATFIRVVGSE 191 (364)
T ss_pred CCCCHHHhCChHHHH---HHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCEEecchHH
Confidence 345778999999887 7777766432 236799999999999999999999998 7777776543
Q ss_pred c-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhH---h----cCcEEEEe
Q 008664 196 S-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVI---E----DGSIVFIG 250 (558)
Q Consensus 196 ~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~l---e----~~~iilI~ 250 (558)
. +...++.++..+.. ..++||||||+|.+. ...+..|..++ + .+.+.+|+
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~~-----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ 266 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAKE-----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIA 266 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHHh-----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 2 12223444444322 367899999999873 23344454444 3 24677887
Q ss_pred ccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHH
Q 008664 251 ATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVA 326 (558)
Q Consensus 251 att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~ 326 (558)
+| |....+++++++ || ..+.|+.|+.++..+|++..+.. ..+. ++..+..|++.+.| ..+.+
T Consensus 267 tt--n~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~-----------~~l~-~~~~~~~la~~t~g~sg~dl 332 (364)
T TIGR01242 267 AT--NRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK-----------MKLA-EDVDLEAIAKMTEGASGADL 332 (364)
T ss_pred ec--CChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc-----------CCCC-ccCCHHHHHHHcCCCCHHHH
Confidence 77 555688999986 66 58899999999999999877644 1111 11236778887766 45566
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.+++..+...+..+ + ...|+.+|+.+++.+
T Consensus 333 ~~l~~~A~~~a~~~-------------~-------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 333 KAICTEAGMFAIRE-------------E-------RDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHHh-------------C-------CCccCHHHHHHHHHH
Confidence 66777776655331 2 457999999998864
No 141
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.1e-15 Score=155.29 Aligned_cols=166 Identities=19% Similarity=0.232 Sum_probs=129.5
Q ss_pred HHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCCC-------------------ceEEEE--ecc--------cc
Q 008664 147 SLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAVS-------------------YKFVCL--SAV--------TS 196 (558)
Q Consensus 147 ~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~~-------------------~~~i~l--~~~--------~~ 196 (558)
..+...+..++.++ +||+||+|+||+++|..+|+.+.|. .++..+ ... ..
T Consensus 14 ~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I 93 (319)
T PRK08769 14 DQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEI 93 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccc
Confidence 77888888888754 9999999999999999999987521 223333 221 23
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeecc
Q 008664 197 GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLN 274 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~ 274 (558)
+++.+|++.+.....+ ..++..|+|||++|.|+...+|+||++||+ ...+||..+ +....+.++++|||+.+.|.
T Consensus 94 ~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~--~~~~~lLpTIrSRCq~i~~~ 170 (319)
T PRK08769 94 VIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLIS--AQPARLPATIRSRCQRLEFK 170 (319)
T ss_pred cHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEE--CChhhCchHHHhhheEeeCC
Confidence 5778888887775543 446789999999999999999999999999 456666665 33447889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHH
Q 008664 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEI 332 (558)
Q Consensus 275 ~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~ 332 (558)
+++.+++..+|.. . .+++.....++..++|.+..++.+++.
T Consensus 171 ~~~~~~~~~~L~~---------------~--~~~~~~a~~~~~l~~G~p~~A~~~~~~ 211 (319)
T PRK08769 171 LPPAHEALAWLLA---------------Q--GVSERAAQEALDAARGHPGLAAQWLRE 211 (319)
T ss_pred CcCHHHHHHHHHH---------------c--CCChHHHHHHHHHcCCCHHHHHHHhcC
Confidence 9999999988864 1 144555667789999999998877643
No 142
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.67 E-value=4.2e-15 Score=167.92 Aligned_cols=202 Identities=19% Similarity=0.284 Sum_probs=150.1
Q ss_pred CCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHH-HH
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDA-VE 206 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~-~~ 206 (558)
..|++++|+...+ ..+.+.+.. ....+++|+|++|||||++|++|+.... ...+|+.++|.......+... |.
T Consensus 373 ~~~~~liG~S~~~---~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAM---YSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred ccccceeecCHHH---HHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcC
Confidence 4678899998887 555544442 2236899999999999999999999875 457999999977643332221 11
Q ss_pred HH----------HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----C
Q 008664 207 DA----------RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----F 258 (558)
Q Consensus 207 ~~----------~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~ 258 (558)
.. .........+++||||||+.++.+.|..|+.+++++. +.+|++|+.+.. .
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 10 0001122356899999999999999999999997743 578888866542 2
Q ss_pred CCcHHhhccc--ceeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHH
Q 008664 259 HLITPLLSRC--RVLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEIS 333 (558)
Q Consensus 259 ~l~~aL~sR~--~~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a 333 (558)
.+...|..|+ ..|.++||.+ +|+..+++.++.++...+ +.....+++++++.|..+ |+||+|++.|+++++
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~----~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a 605 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM----GRNIDSIPAETLRTLSNMEWPGNVRELENVIERA 605 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc----CCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 4556677776 3688999987 889999999888766554 334446999999999998 999999999999999
Q ss_pred HHHhcc
Q 008664 334 AITAAV 339 (558)
Q Consensus 334 ~~~a~~ 339 (558)
+..+..
T Consensus 606 ~~~~~~ 611 (686)
T PRK15429 606 VLLTRG 611 (686)
T ss_pred HHhCCC
Confidence 987653
No 143
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.67 E-value=1.9e-15 Score=161.54 Aligned_cols=162 Identities=22% Similarity=0.383 Sum_probs=120.3
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCC-----
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVS----- 185 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~----- 185 (558)
..+...+.+|++|.|.+..+ +.++..+.. ..++++|||||||||||++|+++|+.+...
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i---~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQI---EQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred eeecCCCCCHHHcCChHHHH---HHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 34566677999999999888 777777643 124789999999999999999999998622
Q ss_pred ---ceEEEEeccc-------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH------------HHHHHHhhHhc
Q 008664 186 ---YKFVCLSAVT-------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS------------QQDSFLPVIED 243 (558)
Q Consensus 186 ---~~~i~l~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~------------~~~~Ll~~le~ 243 (558)
..|+.+.... .+...++.++..+.... ..+.+.||||||+|.+.+. ..+.|+..|+.
T Consensus 249 ~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 249 GDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKA-SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred CCceeEEeccchhhcccccchHHHHHHHHHHHHHHHh-hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 2344443222 13445777777775542 3356899999999987431 23567777764
Q ss_pred ----CcEEEEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHh
Q 008664 244 ----GSIVFIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 244 ----~~iilI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
+.+++|++| |....++++|++ || ..|.|++|+.++..+|++.++..
T Consensus 328 l~~~~~ViVI~AT--N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 VESLDNVIVIGAS--NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccCCceEEEecc--CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 567888877 777799999998 77 47999999999999999998754
No 144
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-16 Score=163.85 Aligned_cols=210 Identities=13% Similarity=0.152 Sum_probs=150.5
Q ss_pred CCCCCCCCccchhHHhhhhhhhhhcccCCCCcchhhhccc-ccCCCCCccCCCCCCCchhhcCCCCCCccccccccCCch
Q 008664 68 KLDRFFHFQTKPSSAAANAVQEKEKDREIEPSPLFKRLKT-RHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPN 146 (558)
Q Consensus 68 ~~~~~lp~k~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~rp~~~~dviGq~~~i~~~ 146 (558)
++.+|+++.. .++..+...++...++.......+.. ....|....+.++...-+-.|.|..-+.|+..-+.+..+
T Consensus 148 V~~syl~~v~----~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~ 223 (457)
T KOG0743|consen 148 VTLSYLPYVV----SKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKG 223 (457)
T ss_pred hHHhHHHHHH----HHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhc
Confidence 7788888777 77888888888888888877666654 456677777777655555556665544444333332222
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCC
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEi 226 (558)
+....-+...+.+++|||||||||||+++.++|+.++.+...++++....+.+ ++.++... ..++||+|+||
T Consensus 224 k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~d-Lr~LL~~t-------~~kSIivIEDI 295 (457)
T KOG0743|consen 224 KDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSD-LRHLLLAT-------PNKSILLIEDI 295 (457)
T ss_pred chHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHH-HHHHHHhC-------CCCcEEEEeec
Confidence 33333333344589999999999999999999999995555566655555543 77776644 47789999999
Q ss_pred ccCCH------------------HHHHHHHhhHhc------CcEEEEeccCCCCCCCCcHHhhccc---ceeeccCCCHH
Q 008664 227 HRFNK------------------SQQDSFLPVIED------GSIVFIGATTENPSFHLITPLLSRC---RVLTLNPLKPH 279 (558)
Q Consensus 227 d~l~~------------------~~~~~Ll~~le~------~~iilI~att~n~~~~l~~aL~sR~---~~i~~~~l~~~ 279 (558)
|.-.. -....||++++. +..++|++| |...+++|||+++. ..|.+...+.+
T Consensus 296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT--Nh~EkLDPALlRpGRmDmhI~mgyCtf~ 373 (457)
T KOG0743|consen 296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT--NHKEKLDPALLRPGRMDMHIYMGYCTFE 373 (457)
T ss_pred ccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec--CChhhcCHhhcCCCcceeEEEcCCCCHH
Confidence 96511 134579999986 356777766 77789999999965 37999999999
Q ss_pred HHHHHHHHHHHh
Q 008664 280 DVEILLKRAVDD 291 (558)
Q Consensus 280 ~i~~iL~~~l~~ 291 (558)
....+..+++.-
T Consensus 374 ~fK~La~nYL~~ 385 (457)
T KOG0743|consen 374 AFKTLASNYLGI 385 (457)
T ss_pred HHHHHHHHhcCC
Confidence 999999888743
No 145
>PRK15115 response regulator GlrR; Provisional
Probab=99.66 E-value=3.4e-15 Score=160.83 Aligned_cols=234 Identities=17% Similarity=0.199 Sum_probs=165.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHHHH-----------hhhhcCCceEEEEeCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDARK-----------LRVKSNKRTVLFVDEV 226 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~il~IDEi 226 (558)
.+++|+|++|+|||++|+.+++... ...+|+.++|.......+...+..... .......+++||||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 237 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEcc
Confidence 6799999999999999999999875 447899999987765544433211100 0112235689999999
Q ss_pred ccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCCcHHhhcccc--eeeccCCCH--HHHHHH
Q 008664 227 HRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHLITPLLSRCR--VLTLNPLKP--HDVEIL 284 (558)
Q Consensus 227 d~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l~~aL~sR~~--~i~~~~l~~--~~i~~i 284 (558)
|.|+...|..|+.+++++. +.+|++|+.+.. ..+.+.|..|+. .|.++||.+ +|+..+
T Consensus 238 ~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l 317 (444)
T PRK15115 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLL 317 (444)
T ss_pred ccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHH
Confidence 9999999999999998753 467777765432 245566777764 678889887 789989
Q ss_pred HHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCcc
Q 008664 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363 (558)
Q Consensus 285 L~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (558)
+..++.++.... +.....+++++++.|..+ |+||+|++.+.++.++..+.. .
T Consensus 318 ~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~-----------------------~ 370 (444)
T PRK15115 318 ANHLLRQAAERH----KPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSS-----------------------P 370 (444)
T ss_pred HHHHHHHHHHHh----CCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC-----------------------C
Confidence 888888755443 223346999999999999 899999999999999876543 3
Q ss_pred ccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHh
Q 008664 364 LVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLA 443 (558)
Q Consensus 364 ~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a 443 (558)
.|+.+++...+... . . ..+ . +..-++ .+.|.++..|.++.|.
T Consensus 371 ~i~~~~l~~~~~~~-----~-~----------------~~~--~---~~~~~~------~~E~~~i~~al~~~~g----- 412 (444)
T PRK15115 371 VISDALVEQALEGE-----N-T----------------ALP--T---FVEARN------QFELNYLRKLLQITKG----- 412 (444)
T ss_pred ccChhhhhhhhccc-----c-c----------------ccc--c---HHHHHH------HHHHHHHHHHHHHhCC-----
Confidence 68888776543210 0 0 000 0 111111 4677788777777666
Q ss_pred HHHHHHHHHHHHHhCCchh
Q 008664 444 LNQAVSCYQACHFLGMPEC 462 (558)
Q Consensus 444 ~~~~~~~~~a~~~~G~pe~ 462 (558)
+..+||+.|||.-.
T Consensus 413 -----n~~~aA~~Lgisr~ 426 (444)
T PRK15115 413 -----NVTHAARMAGRNRT 426 (444)
T ss_pred -----CHHHHHHHhCCCHH
Confidence 67888999998543
No 146
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.66 E-value=3.4e-15 Score=160.88 Aligned_cols=201 Identities=17% Similarity=0.245 Sum_probs=150.8
Q ss_pred CCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHH
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDA 208 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~ 208 (558)
.+.+++|....+ ..+...+.. ....+++|+|++||||+++|+.++.... ...+|+.++|.......+...+...
T Consensus 137 ~~~~lig~s~~~---~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGM---QKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGY 213 (445)
T ss_pred cccceeecCHHH---HHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCC
Confidence 456688887766 555555543 2336799999999999999999998875 3468999999887654443322110
Q ss_pred H--------H---hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CC
Q 008664 209 R--------K---LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FH 259 (558)
Q Consensus 209 ~--------~---~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~ 259 (558)
. . .......+++||||||+.|+...|..|+.+++++. +.+|++|+.+.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 0 0 00122467899999999999999999999998743 578888765532 35
Q ss_pred CcHHhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 008664 260 LITPLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISA 334 (558)
Q Consensus 260 l~~aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~ 334 (558)
+.+.|..|+. .|.++|+.+ +|+..++..++.++...+ +.....+++++++.|..+ |+||+|++.|++++++
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAREL----KRKTKGFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHh----CCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 6677878874 788999987 789999998888866554 334568999999999998 9999999999999999
Q ss_pred HHhcc
Q 008664 335 ITAAV 339 (558)
Q Consensus 335 ~~a~~ 339 (558)
..+..
T Consensus 370 ~~~~~ 374 (445)
T TIGR02915 370 IMAEG 374 (445)
T ss_pred HhCCC
Confidence 87653
No 147
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.65 E-value=8.5e-16 Score=141.97 Aligned_cols=134 Identities=28% Similarity=0.548 Sum_probs=102.6
Q ss_pred cccccCCchHHHHHHHHcCCCCe-EEEEcCCCchHHHHHHHHHHHhCC---------------------CceEEEEeccc
Q 008664 138 GQDHLLSPNSLLRSAVCSNRLPS-IIFWGPPGTGKTTLAKAIVNSVAV---------------------SYKFVCLSAVT 195 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~~~~~~-~LL~GppGtGKTtLa~~la~~l~~---------------------~~~~i~l~~~~ 195 (558)
||+.++ +.|.+.+..++.++ +||+||+|+||+++|..+++.+.+ +.+++.+....
T Consensus 1 gq~~~~---~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 1 GQEEII---ELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK 77 (162)
T ss_dssp S-HHHH---HHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred CcHHHH---HHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence 677777 89999999999865 899999999999999999999862 34566666553
Q ss_pred ----ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccc
Q 008664 196 ----SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCR 269 (558)
Q Consensus 196 ----~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~ 269 (558)
.+.++++++.+...... ..+.+.|++|||+|.|+...+++||+.||+ ..++||..| +....+.++++|||+
T Consensus 78 ~~~~i~i~~ir~i~~~~~~~~-~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t--~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 78 KKKSIKIDQIREIIEFLSLSP-SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT--NNPSKILPTIRSRCQ 154 (162)
T ss_dssp SSSSBSHHHHHHHHHHCTSS--TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE--S-GGGS-HHHHTTSE
T ss_pred ccchhhHHHHHHHHHHHHHHH-hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE--CChHHChHHHHhhce
Confidence 47889998888765443 346789999999999999999999999999 467777766 333489999999999
Q ss_pred eeeccCCC
Q 008664 270 VLTLNPLK 277 (558)
Q Consensus 270 ~i~~~~l~ 277 (558)
.+.|+|++
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 99999875
No 148
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=2.1e-15 Score=175.44 Aligned_cols=181 Identities=12% Similarity=0.163 Sum_probs=135.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc----------------------------------------
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG---------------------------------------- 197 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~---------------------------------------- 197 (558)
++++||+||||||||.||+++|.+.+ .+|+.+++...-
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~--VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY--VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC--CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 47899999999999999999999999 888888763321
Q ss_pred --------HH--HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH-----HHHHHHhhHhc-------CcEEEEeccCCC
Q 008664 198 --------VK--DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-----QQDSFLPVIED-------GSIVFIGATTEN 255 (558)
Q Consensus 198 --------~~--~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-----~~~~Ll~~le~-------~~iilI~att~n 255 (558)
+. .++.+++.|+.. .++||+|||||.+... ....|+..|+. ..+++|+|| |
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~-----SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAAT--N 1780 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAM-----SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAST--H 1780 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHC-----CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeC--C
Confidence 11 145566666554 7899999999999754 24677777763 347888888 6
Q ss_pred CCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH--HHHHHHHhCCC-CHHHHHHH
Q 008664 256 PSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD--AIEFLCSNCDG-DARVALNA 329 (558)
Q Consensus 256 ~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~--al~~La~~s~G-d~R~~~~~ 329 (558)
....++|||++ |+ +.|.+..|+..+.++++...+.. .++.++++ .++.+|+.+.| ..+.+.++
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t-----------kg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT-----------RGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh-----------cCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 77799999998 77 58889888887777777644322 23333322 36788999877 78888899
Q ss_pred HHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 330 Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
+..|+..+..+ + ...|+.++++.++.+..
T Consensus 1850 vNEAaliAirq-------------~-------ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1850 TNEALSISITQ-------------K-------KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHHc-------------C-------CCccCHHHHHHHHHHHH
Confidence 99988876552 3 46799999999988653
No 149
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.65 E-value=5.3e-15 Score=160.13 Aligned_cols=280 Identities=20% Similarity=0.221 Sum_probs=186.2
Q ss_pred CccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHHHH
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDARK 210 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~~~ 210 (558)
..++|..... ..+.+.+.. ....++++.|++||||+++|+++++... ...+|+.++|.....+.+...+.....
T Consensus 134 ~~lig~s~~~---~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~ 210 (463)
T TIGR01818 134 AELIGEAPAM---QEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEK 210 (463)
T ss_pred cceeecCHHH---HHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCC
Confidence 3577776655 444444432 2336799999999999999999999875 457899999988765554443311000
Q ss_pred -----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCCc
Q 008664 211 -----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHLI 261 (558)
Q Consensus 211 -----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l~ 261 (558)
.......+++||||||+.|+...|..|+.+++++. +.+|++|+.+.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 00112356889999999999999999999998753 467777765532 2456
Q ss_pred HHhhcccc--eeeccCCC--HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Q 008664 262 TPLLSRCR--VLTLNPLK--PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAIT 336 (558)
Q Consensus 262 ~aL~sR~~--~i~~~~l~--~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~ 336 (558)
+.|..|+. .|.++||. .+|+..++..++.++...+ +.....+++++++.|.++ |+||+|++.+++++++..
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL----DVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh----CCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 68888874 78899998 5899999999988765543 334467999999999999 999999999999999987
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc-cc--ccCC-CcchHHHHHHHHHHhcCCCHHHHHHHHH
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH-LA--YDRA-GEEHYNLISALHKSMRGNDADAAIYWLA 412 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~-~~--~d~~-~~~~~d~isal~ks~rgsd~~aal~~l~ 412 (558)
+.. ..|+.+++...+.... .. .+.. .+...+-++.+.++........ .+.
T Consensus 367 ~~~-----------------------~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 420 (463)
T TIGR01818 367 ASG-----------------------DEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQG---LLD 420 (463)
T ss_pred CCC-----------------------CcccHHhchHHHhccccccccccccccccccccccccccccccccccc---hHH
Confidence 753 3688888765543210 00 0000 0011111222222221111000 122
Q ss_pred HHHhCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchh
Q 008664 413 RMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462 (558)
Q Consensus 413 ~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~ 462 (558)
..++ .+.|.++..|.++.|. +..+||+.|||.-.
T Consensus 421 ~~l~------~~E~~~i~~al~~~~g----------n~~~aA~~Lgisr~ 454 (463)
T TIGR01818 421 RALP------EFERPLLEAALQHTRG----------HKQEAAALLGWGRN 454 (463)
T ss_pred HHHH------HHHHHHHHHHHHHcCC----------CHHHHHHHhCCCHH
Confidence 2222 5678888888877776 78999999999743
No 150
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.64 E-value=1.1e-14 Score=157.49 Aligned_cols=267 Identities=15% Similarity=0.193 Sum_probs=179.6
Q ss_pred CCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHHH
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDAR 209 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~~ 209 (558)
+..++|....+ ..+.+.+... ...+++++|++||||+++|+.++.... ...+|+.++|.......+...+....
T Consensus 142 ~~~ii~~S~~~---~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~ 218 (457)
T PRK11361 142 WGHILTNSPAM---MDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE 218 (457)
T ss_pred ccceecccHHH---hHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCC
Confidence 34577776655 4444433321 226799999999999999999998765 44789999998776544433221100
Q ss_pred H-----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCC
Q 008664 210 K-----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHL 260 (558)
Q Consensus 210 ~-----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l 260 (558)
. .......+++||||||+.++...|..|+.+++++. +.+|++|+.+.. ..+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 0 01122356899999999999999999999998743 578888865532 356
Q ss_pred cHHhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q 008664 261 ITPLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAI 335 (558)
Q Consensus 261 ~~aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~ 335 (558)
.+.|..|+. .+.++|+.+ +|+..++..++.++.... +.....+++++++.|..+ |+||+|++.+.++.++.
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN----QRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc----CCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 667777764 677888885 888888888888765543 234467999999999998 99999999999999987
Q ss_pred HhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008664 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML 415 (558)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll 415 (558)
.+.. ..|+.+++...+......... ... ...+. . -+...+
T Consensus 375 ~~~~-----------------------~~i~~~~l~~~~~~~~~~~~~-~~~----------~~~~~-----~-~l~~~~ 414 (457)
T PRK11361 375 MNSG-----------------------PIIFSEDLPPQIRQPVCNAGE-VKT----------APVGE-----R-NLKEEI 414 (457)
T ss_pred hCCC-----------------------CcccHHHChHhhhcccccccc-ccc----------ccccc-----c-chhhHH
Confidence 7643 368888876444211000000 000 00000 0 011112
Q ss_pred hCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchh
Q 008664 416 EGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462 (558)
Q Consensus 416 ~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~ 462 (558)
+ .+.|.++..|.++.|. +..+||+.|||.-.
T Consensus 415 ~------~~E~~~i~~al~~~~g----------n~~~aA~~LGisr~ 445 (457)
T PRK11361 415 K------RVEKRIIMEVLEQQEG----------NRTRTALMLGISRR 445 (457)
T ss_pred H------HHHHHHHHHHHHHhCC----------CHHHHHHHHCCCHH
Confidence 2 5778888888777765 68899999999744
No 151
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=9.3e-15 Score=148.25 Aligned_cols=163 Identities=15% Similarity=0.262 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC---------------------CceEEEEecc----cccHHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV---------------------SYKFVCLSAV----TSGVKD 200 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~---------------------~~~~i~l~~~----~~~~~~ 200 (558)
..+.+.+..++. +.+||+||.|+||+++|+.+|+.+.| +.+++.+... ..++++
T Consensus 13 ~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdq 92 (319)
T PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQ 92 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHH
Confidence 678888888887 57999999999999999999998852 2345555432 347888
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCH
Q 008664 201 VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~ 278 (558)
+|++.+...... ..+...|++||++|+|+...+|+||+++|+ ...+||..|+ + ...+.++++|||+.+.|++++.
T Consensus 93 iR~l~~~~~~~~-~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~-~-~~~lLpTI~SRCq~~~~~~~~~ 169 (319)
T PRK06090 93 IRQCNRLAQESS-QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH-N-QKRLLPTIVSRCQQWVVTPPST 169 (319)
T ss_pred HHHHHHHHhhCc-ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC-C-hhhChHHHHhcceeEeCCCCCH
Confidence 998876664433 456789999999999999999999999999 5566776663 3 3488999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 279 HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 279 ~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
+++.++|.. .++. ....+++.++|++..++..++
T Consensus 170 ~~~~~~L~~---------------~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 170 AQAMQWLKG---------------QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred HHHHHHHHH---------------cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 999998864 2222 134677889999999987754
No 152
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.63 E-value=4.1e-15 Score=149.96 Aligned_cols=147 Identities=17% Similarity=0.232 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~ 230 (558)
+..++||||||||||.+|+++|++++ ..++.+++... ++..+|++|..+.......+.++||||||||.+.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg--~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMG--IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcC--CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 46799999999999999999999999 88999987532 5678999999987653345688999999999764
Q ss_pred HH-----------H-HHHHHhhHhc----------------CcEEEEeccCCCCCCCCcHHhhc--ccceeeccCCCHHH
Q 008664 231 KS-----------Q-QDSFLPVIED----------------GSIVFIGATTENPSFHLITPLLS--RCRVLTLNPLKPHD 280 (558)
Q Consensus 231 ~~-----------~-~~~Ll~~le~----------------~~iilI~att~n~~~~l~~aL~s--R~~~i~~~~l~~~~ 280 (558)
+. . ...|+..+++ ..+.+|++| |....++++|++ |+..+ +..|+.++
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTT--Nrpd~LDpALlRpGRfDk~-i~lPd~e~ 302 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTG--NDFSTLYAPLIRDGRMEKF-YWAPTRED 302 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeC--CCcccCCHhHcCCCCCCce-eCCCCHHH
Confidence 31 1 1356666542 335666665 667799999999 88543 34689999
Q ss_pred HHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCC
Q 008664 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD 322 (558)
Q Consensus 281 i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd 322 (558)
+..||+.+++. ..++...+..|+...+|-
T Consensus 303 R~eIL~~~~r~-------------~~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 303 RIGVVHGIFRD-------------DGVSREDVVKLVDTFPGQ 331 (413)
T ss_pred HHHHHHHHhcc-------------CCCCHHHHHHHHHcCCCC
Confidence 99999988754 345678888999987774
No 153
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.5e-15 Score=161.33 Aligned_cols=209 Identities=27% Similarity=0.347 Sum_probs=157.6
Q ss_pred CCCCCccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc----
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---- 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---- 196 (558)
..+|.|+.|.++++.+...+...++... +..++|+||||||||.||+++|.+.+ .+|+.++.++.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iSGS~FVemf 223 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVEMF 223 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCceeccchhhhhhh
Confidence 3589999999999855555666666433 37899999999999999999999999 99999998765
Q ss_pred ---cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--------------HHHHHHhhHhc----CcEEEEeccCCC
Q 008664 197 ---GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIED----GSIVFIGATTEN 255 (558)
Q Consensus 197 ---~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le~----~~iilI~att~n 255 (558)
|...+|.+|+++++. .++||||||||...+. ..+.||.-|+. ..+++|++| |
T Consensus 224 VGvGAsRVRdLF~qAkk~-----aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT--N 296 (596)
T COG0465 224 VGVGASRVRDLFEQAKKN-----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT--N 296 (596)
T ss_pred cCCCcHHHHHHHHHhhcc-----CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecC--C
Confidence 778999999999765 6799999999987542 45677777766 247888887 7
Q ss_pred CCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCC-HHHHHHHHH
Q 008664 256 PSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD-ARVALNALE 331 (558)
Q Consensus 256 ~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd-~R~~~~~Le 331 (558)
...-++++|++ || +.+.+..++.....+|++-.+.. . .....++ +..|++.+.|- .-.+.|++.
T Consensus 297 RpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~-------~l~~~Vd---l~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 297 RPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--K-------PLAEDVD---LKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred CcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--C-------CCCCcCC---HHHHhhhCCCcccchHhhhHH
Confidence 76788999998 55 67888888889999999966544 1 1122233 34488887774 345667776
Q ss_pred HHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccc
Q 008664 332 ISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHL 379 (558)
Q Consensus 332 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~ 379 (558)
.+...+... + ...|+..++.++..+...
T Consensus 365 EAal~aar~-------------n-------~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 365 EAALLAARR-------------N-------KKEITMRDIEEAIDRVIA 392 (596)
T ss_pred HHHHHHHHh-------------c-------CeeEeccchHHHHHHHhc
Confidence 666665432 2 467999999999887543
No 154
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=5.1e-15 Score=155.60 Aligned_cols=194 Identities=25% Similarity=0.396 Sum_probs=129.7
Q ss_pred cccccccCCchHHHHHHHHc-------C---------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccH-
Q 008664 136 VVGQDHLLSPNSLLRSAVCS-------N---------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV- 198 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~-------~---------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~- 198 (558)
|+||++++ +.+..++.. . ...++||+||||||||++|+++|+.++ .+|+.++++....
T Consensus 73 ViGq~~ak---~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~--~pf~~id~~~l~~~ 147 (412)
T PRK05342 73 VIGQERAK---KVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD--VPFAIADATTLTEA 147 (412)
T ss_pred eeChHHHH---HHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC--CCceecchhhcccC
Confidence 89999997 666555421 0 126899999999999999999999998 8888888754321
Q ss_pred ----HHHHHHHHHHHH---hhhhcCCceEEEEeCCccCCHH--------------HHHHHHhhHhcCc------------
Q 008664 199 ----KDVRDAVEDARK---LRVKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIEDGS------------ 245 (558)
Q Consensus 199 ----~~i~~~~~~~~~---~~~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le~~~------------ 245 (558)
.++..++..... .......++||||||||.+++. .|+.||++||...
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 122233222211 1112346789999999999753 8999999997421
Q ss_pred -----------EEEEeccCC--------------------C-C---------------------CCCCcHHhhccc-cee
Q 008664 246 -----------IVFIGATTE--------------------N-P---------------------SFHLITPLLSRC-RVL 271 (558)
Q Consensus 246 -----------iilI~att~--------------------n-~---------------------~~~l~~aL~sR~-~~i 271 (558)
+.+|+..+- + . .+.+.|+|+.|+ .++
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv 307 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVA 307 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeee
Confidence 112211100 0 0 001467888898 478
Q ss_pred eccCCCHHHHHHHHHH----HHHhHhcccccccCCcccccChHHHHHHHHhC---CCCHHHHHHHHHHHHHH
Q 008664 272 TLNPLKPHDVEILLKR----AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC---DGDARVALNALEISAIT 336 (558)
Q Consensus 272 ~~~~l~~~~i~~iL~~----~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s---~Gd~R~~~~~Le~a~~~ 336 (558)
.|.+|+.+++..|+.. .++++...+.. .+-.+.++++++++|++.+ .-.+|.+.+.++..+.-
T Consensus 308 ~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~--~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~ 377 (412)
T PRK05342 308 TLEELDEEALVRILTEPKNALVKQYQKLFEM--DGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLD 377 (412)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHH
Confidence 9999999999999983 44443332211 2356789999999999972 34678888888776654
No 155
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1e-14 Score=159.06 Aligned_cols=205 Identities=25% Similarity=0.364 Sum_probs=152.0
Q ss_pred CCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
.+++++.|.+... ..+...+.. .....+||+||||||||.||+++|++++ .+|+.+.....
T Consensus 239 v~~~diggl~~~k---~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~l~ 313 (494)
T COG0464 239 VTLDDIGGLEEAK---EELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSELL 313 (494)
T ss_pred cceehhhcHHHHH---HHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHHHh
Confidence 4677777766655 444444432 1235899999999999999999999998 89999887532
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEeccCCC
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGATTEN 255 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~att~n 255 (558)
....++.+|..++.. .++||||||+|.+.. ...+.|+..++. ..+.+|++| |
T Consensus 314 sk~vGesek~ir~~F~~A~~~-----~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aT--N 386 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKL-----APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAAT--N 386 (494)
T ss_pred ccccchHHHHHHHHHHHHHcC-----CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecC--C
Confidence 566788899888754 789999999998732 456677777753 456778877 7
Q ss_pred CCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccc-cChHHHHHHHHhCCC-CHHHHHHHH
Q 008664 256 PSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVE-VNHDAIEFLCSNCDG-DARVALNAL 330 (558)
Q Consensus 256 ~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~-i~~~al~~La~~s~G-d~R~~~~~L 330 (558)
..+.+++++++ || .++.|++++.++..++++..+.. .... .++-.++.+++.+.| ....+..++
T Consensus 387 ~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~-----------~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 387 RPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD-----------KKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred CccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc-----------cCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 77899999999 98 48999999999999999998865 2222 345567778877665 555666777
Q ss_pred HHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 331 EISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 331 e~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+.+...+..+ . ....||.+|+.+++.+.
T Consensus 456 ~ea~~~~~~~-------------~------~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 456 REAALEALRE-------------A------RRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHHHH-------------h------ccCCccHHHHHHHHHhc
Confidence 7777665431 0 02369999999998864
No 156
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.62 E-value=1.1e-14 Score=140.37 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=105.3
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhcC-cEEEEeccCC-----------CCCCCCcHHhhcccceeeccCCCHHHHHHH
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDG-SIVFIGATTE-----------NPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~~-~iilI~att~-----------n~~~~l~~aL~sR~~~i~~~~l~~~~i~~i 284 (558)
-++||||||+|.|+-+.+..|.+.+|.. .-++|++++. ...+-+++.|+.|..++...+++++++++|
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 4789999999999999999999999982 3445555532 123568899999999999999999999999
Q ss_pred HHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCcc
Q 008664 285 LKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363 (558)
Q Consensus 285 L~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (558)
++..... +++.++++++..+++. +...+|.++.+|--+...+... | ..
T Consensus 376 i~~Ra~~-----------E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~-------------g-------~~ 424 (456)
T KOG1942|consen 376 IKIRAQV-----------EGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN-------------G-------RK 424 (456)
T ss_pred HHHHHhh-----------hcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc-------------C-------Cc
Confidence 9999877 8999999999999998 6778999999998666655442 3 45
Q ss_pred ccCHHHHHHHHh
Q 008664 364 LVTLDDAKEAFQ 375 (558)
Q Consensus 364 ~It~e~v~~~l~ 375 (558)
.|..+|++++-.
T Consensus 425 ~i~v~dvee~~~ 436 (456)
T KOG1942|consen 425 EISVEDVEEVTE 436 (456)
T ss_pred eeecccHHHHHH
Confidence 788888888754
No 157
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.62 E-value=1e-14 Score=151.47 Aligned_cols=207 Identities=18% Similarity=0.300 Sum_probs=141.9
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHH-----cCCC--CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVC-----SNRL--PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~-----~~~~--~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
.....+|.++|+|++.+|+.-+...+ ..++.|+. .... +.+||+||+||||||.++.|+++++ +.+++
T Consensus 66 ~d~~elW~eKy~P~t~eeLAVHkkKI---~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg--~~~~E 140 (634)
T KOG1970|consen 66 EDEFELWVEKYKPRTLEELAVHKKKI---SEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG--YQLIE 140 (634)
T ss_pred ccccchhHHhcCcccHHHHhhhHHhH---HHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC--ceeee
Confidence 44567899999999999999999988 88888888 4444 4799999999999999999999999 77777
Q ss_pred Eecccc--------------------cHHHHHHHHHHHHHh-------hhhcCCceEEEEeCCccCCHH-----HHHHHH
Q 008664 191 LSAVTS--------------------GVKDVRDAVEDARKL-------RVKSNKRTVLFVDEVHRFNKS-----QQDSFL 238 (558)
Q Consensus 191 l~~~~~--------------------~~~~i~~~~~~~~~~-------~~~~~~~~il~IDEid~l~~~-----~~~~Ll 238 (558)
.+.... .....+..+..+.+. ....+.+.+|+|||+-..... .++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 652111 111222233333221 111235669999999765432 345555
Q ss_pred hhHhcCcEEEEeccCC-------CCCCCCcHHhhc--ccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC-
Q 008664 239 PVIEDGSIVFIGATTE-------NPSFHLITPLLS--RCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN- 308 (558)
Q Consensus 239 ~~le~~~iilI~att~-------n~~~~l~~aL~s--R~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~- 308 (558)
.+...+...+|++-|+ |........+.- |...|.|+|....-+.+.|.++|......+ .++.+.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~------s~~k~~~ 294 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKK------SGIKVPD 294 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccc------cCCcCch
Confidence 5555555433333332 222223333333 456899999999999999999998844333 223333
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008664 309 HDAIEFLCSNCDGDARVALNALEISAI 335 (558)
Q Consensus 309 ~~al~~La~~s~Gd~R~~~~~Le~a~~ 335 (558)
...++.|+..++||+|.|++.|+....
T Consensus 295 ~~~v~~i~~~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 295 TAEVELICQGSGGDIRSAINSLQLSSS 321 (634)
T ss_pred hHHHHHHHHhcCccHHHHHhHhhhhcc
Confidence 456888999999999999999999853
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=8.4e-15 Score=165.54 Aligned_cols=220 Identities=17% Similarity=0.286 Sum_probs=150.9
Q ss_pred ccccccccCCchHHHHHHHHc------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHH----
Q 008664 135 DVVGQDHLLSPNSLLRSAVCS------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRD---- 203 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~---- 203 (558)
+.+|.+.++ +.+..++.. .+...++|+||||+|||++++.+++.++ .+++.++.... ...+++.
T Consensus 323 ~~~g~~~vK---~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVK---DRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHH---HHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEcCCCCCHHHhccchhc
Confidence 488888886 666665542 2346799999999999999999999999 77777765432 1222211
Q ss_pred --------HHHHHHHhhhhcCCceEEEEeCCccCCHHH----HHHHHhhHhc-----------------CcEEEEeccCC
Q 008664 204 --------AVEDARKLRVKSNKRTVLFVDEVHRFNKSQ----QDSFLPVIED-----------------GSIVFIGATTE 254 (558)
Q Consensus 204 --------~~~~~~~~~~~~~~~~il~IDEid~l~~~~----~~~Ll~~le~-----------------~~iilI~att~ 254 (558)
++..... ......||||||+|++++++ +++|+.+++. +.++||+++
T Consensus 398 ~~g~~~G~~~~~l~~---~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta-- 472 (784)
T PRK10787 398 YIGSMPGKLIQKMAK---VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS-- 472 (784)
T ss_pred cCCCCCcHHHHHHHh---cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC--
Confidence 1111111 11245699999999999875 5899999975 456676643
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHH-hHhcccccccCCcccccChHHHHHHHHhC--CCCHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD-DVNNGLSKSVGGTRVEVNHDAIEFLCSNC--DGDARVALNALE 331 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~-~~~~~~~~~~~~~~~~i~~~al~~La~~s--~Gd~R~~~~~Le 331 (558)
|.. .++++|++||.++.|.+++.++...|+++.+. +..... ......+.++++++.+|++.+ .-.+|.+.+.++
T Consensus 473 N~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~--~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~ 549 (784)
T PRK10787 473 NSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERN--ALKKGELTVDDSAIIGIIRYYTREAGVRSLEREIS 549 (784)
T ss_pred CCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHh--CCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHH
Confidence 554 69999999999999999999999999999884 211111 012246889999999999763 235788888887
Q ss_pred HHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcccc
Q 008664 332 ISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLA 380 (558)
Q Consensus 332 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~ 380 (558)
..+.....+. ... + ......|+.+++.+.++.....
T Consensus 550 ~i~r~~l~~~-------~~~--~----~~~~v~v~~~~~~~~lg~~~~~ 585 (784)
T PRK10787 550 KLCRKAVKQL-------LLD--K----SLKHIEINGDNLHDYLGVQRFD 585 (784)
T ss_pred HHHHHHHHHH-------Hhc--C----CCceeeecHHHHHHHhCCCccc
Confidence 7765533210 000 1 0113579999999999976443
No 159
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.61 E-value=1.3e-14 Score=148.34 Aligned_cols=224 Identities=17% Similarity=0.228 Sum_probs=144.8
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-------CceEEE-----------
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-------SYKFVC----------- 190 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-------~~~~i~----------- 190 (558)
.|..|++++||++.+ ..+.-..-....+++||+|+||||||++|+++++.+.+ .+.+..
T Consensus 3 ~~~~f~~i~Gq~~~~---~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~ 79 (334)
T PRK13407 3 KPFPFSAIVGQEEMK---QAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVS 79 (334)
T ss_pred CCCCHHHhCCHHHHH---HHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccccc
Confidence 477899999999987 65554443334578999999999999999999999841 111110
Q ss_pred -------------Eecc-----cccHHHHHHHHHHH----HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE--
Q 008664 191 -------------LSAV-----TSGVKDVRDAVEDA----RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI-- 246 (558)
Q Consensus 191 -------------l~~~-----~~~~~~i~~~~~~~----~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i-- 246 (558)
+... -.|.-++...+..- .........+++||+|||++++...|+.|+..|+++.+
T Consensus 80 ~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 80 STTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred CCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 1000 00222222221111 01111223567999999999999999999999987642
Q ss_pred -----------EEEeccCCCCC-CCCcHHhhcccc-eeeccCCCH-HHHHHHHHHHHHhHh--ccc--------------
Q 008664 247 -----------VFIGATTENPS-FHLITPLLSRCR-VLTLNPLKP-HDVEILLKRAVDDVN--NGL-------------- 296 (558)
Q Consensus 247 -----------ilI~att~n~~-~~l~~aL~sR~~-~i~~~~l~~-~~i~~iL~~~l~~~~--~~~-------------- 296 (558)
.|+..+|.|+. ..+.++|+.||. .+.+.+++. ++..+++.+...... ..+
T Consensus 160 ~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (334)
T PRK13407 160 EREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGR 239 (334)
T ss_pred EECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHH
Confidence 12333334653 468899999994 666776666 676777766432100 000
Q ss_pred --ccccCCcccccChHHHHHHHHh---CC-CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHH
Q 008664 297 --SKSVGGTRVEVNHDAIEFLCSN---CD-GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDA 370 (558)
Q Consensus 297 --~~~~~~~~~~i~~~al~~La~~---s~-Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v 370 (558)
..+..-..+.++++++++|++. ++ ..+|..+.++..+...+..+ | ...|+.+||
T Consensus 240 i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~-------------G-------r~~V~~~Di 299 (334)
T PRK13407 240 ILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFE-------------G-------AEAVGRSHL 299 (334)
T ss_pred HHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc-------------C-------CCeeCHHHH
Confidence 0000125678999999998876 22 46888888888888777653 4 678999999
Q ss_pred HHHHh
Q 008664 371 KEAFQ 375 (558)
Q Consensus 371 ~~~l~ 375 (558)
+++..
T Consensus 300 ~~~~~ 304 (334)
T PRK13407 300 RSVAT 304 (334)
T ss_pred HHHHH
Confidence 88764
No 160
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3e-15 Score=144.46 Aligned_cols=167 Identities=27% Similarity=0.419 Sum_probs=124.3
Q ss_pred CCCccccccccCCchHHHHHHHHcC----------C--CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSN----------R--LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--- 196 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~----------~--~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--- 196 (558)
.++||.|.+.+. ..|+.++-.. + .+.+||||||||||+.||+++|.+.+ ..|+.++.++.
T Consensus 131 kWsDVAGLE~AK---eALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSSSDLvSK 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAK---EALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSK 205 (439)
T ss_pred chhhhccchhHH---HHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeehHHHHHH
Confidence 567899988776 7777765431 1 37899999999999999999999999 89999998765
Q ss_pred ----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH-----------HHHHHHhhHhc-----CcEEEEeccCCCC
Q 008664 197 ----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-----------QQDSFLPVIED-----GSIVFIGATTENP 256 (558)
Q Consensus 197 ----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-----------~~~~Ll~~le~-----~~iilI~att~n~ 256 (558)
++.-++++|+-++.. +++||||||||.+... ....||--|+. ..+.++++| |-
T Consensus 206 WmGESEkLVknLFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT--Ni 278 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT--NI 278 (439)
T ss_pred HhccHHHHHHHHHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC--CC
Confidence 455578888887664 8899999999988431 23355555543 457888888 77
Q ss_pred CCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC
Q 008664 257 SFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG 321 (558)
Q Consensus 257 ~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G 321 (558)
.+.++.++++||. .|.++-+........++..+ |.....+++..+..|++.+.|
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl-----------G~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHL-----------GDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheecc-----------CCCccccchhhHHHHHhhcCC
Confidence 7799999999996 55554444443333333332 457778899999999998766
No 161
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-14 Score=150.28 Aligned_cols=211 Identities=18% Similarity=0.295 Sum_probs=150.5
Q ss_pred cccccccCCc-hHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccccH--HHHH-------
Q 008664 136 VVGQDHLLSP-NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTSGV--KDVR------- 202 (558)
Q Consensus 136 viGq~~~i~~-~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~~~--~~i~------- 202 (558)
+.+++..+.. ...+..++..+.+.++++||+||||||++++.+++++.. ...++.+||..... .-+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 5566655511 123445555667788999999999999999999999862 13378888854421 1111
Q ss_pred ----------HHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-----CcEEEEeccCCCC-CCCCcHHhhc
Q 008664 203 ----------DAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-----GSIVFIGATTENP-SFHLITPLLS 266 (558)
Q Consensus 203 ----------~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-----~~iilI~att~n~-~~~l~~aL~s 266 (558)
++++...+.....+...||++||+|.|....++.|..++.- .++.+|+.++... ...+++.+.|
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 22222222222345678999999999987755666665533 3456777664432 3467788888
Q ss_pred ccc--eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcccC
Q 008664 267 RCR--VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEISAITAAVRV 341 (558)
Q Consensus 267 R~~--~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~a~~~~ 341 (558)
++. .|.|+|++.+++..||....+. +.....+++++++.++.. ..||+|.++.+|+.+...+..+
T Consensus 179 ~l~~~~I~F~pY~a~el~~Il~~R~~~---------~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~- 248 (366)
T COG1474 179 SLGPSEIVFPPYTAEELYDILRERVEE---------GFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE- 248 (366)
T ss_pred ccCcceeeeCCCCHHHHHHHHHHHHHh---------hccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh-
Confidence 873 6889999999999999999876 336777899999998865 6789999999999999998752
Q ss_pred CccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 342 PVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
+ ...|+.+++..+..
T Consensus 249 ------------~-------~~~v~~~~v~~a~~ 263 (366)
T COG1474 249 ------------G-------SRKVSEDHVREAQE 263 (366)
T ss_pred ------------C-------CCCcCHHHHHHHHH
Confidence 3 56899999999844
No 162
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.60 E-value=1.9e-14 Score=147.31 Aligned_cols=229 Identities=21% Similarity=0.240 Sum_probs=153.6
Q ss_pred chhhcCCC-CCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC-----ceEE--------
Q 008664 124 LSERMRPV-NINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-----YKFV-------- 189 (558)
Q Consensus 124 l~~~~rp~-~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~-----~~~i-------- 189 (558)
+.++.++. .|.+++||++.+ ..|...+...+++++||.||+|||||++|+.+++.+... .+|.
T Consensus 6 ~~~~~~~~~pf~~ivGq~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~ 82 (350)
T CHL00081 6 LKKKERPVFPFTAIVGQEEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPEL 82 (350)
T ss_pred hhhccCCCCCHHHHhChHHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhh
Confidence 34444554 789999999987 888888888888999999999999999999998887510 1111
Q ss_pred -------------------------EEecccccHH------HHHHHHHHHH----HhhhhcCCceEEEEeCCccCCHHHH
Q 008664 190 -------------------------CLSAVTSGVK------DVRDAVEDAR----KLRVKSNKRTVLFVDEVHRFNKSQQ 234 (558)
Q Consensus 190 -------------------------~l~~~~~~~~------~i~~~~~~~~----~~~~~~~~~~il~IDEid~l~~~~~ 234 (558)
.+.. ....+ ++...+.... ........+++||+|||++++...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q 161 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPL-GATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLV 161 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCC-CCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHH
Confidence 0000 00111 1122221111 1111233578999999999999999
Q ss_pred HHHHhhHhcCcE-------------EEEeccCCCCC-CCCcHHhhcccc-eeeccCCC-HHHHHHHHHHHHHhH--hcc-
Q 008664 235 DSFLPVIEDGSI-------------VFIGATTENPS-FHLITPLLSRCR-VLTLNPLK-PHDVEILLKRAVDDV--NNG- 295 (558)
Q Consensus 235 ~~Ll~~le~~~i-------------ilI~att~n~~-~~l~~aL~sR~~-~i~~~~l~-~~~i~~iL~~~l~~~--~~~- 295 (558)
..|+..|+++.+ .|+.++|.|+. ..+.++|+.||. .+.+..++ .++..+++++..... ...
T Consensus 162 ~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~ 241 (350)
T CHL00081 162 DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEF 241 (350)
T ss_pred HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhh
Confidence 999999987431 23444455664 368999999995 67788777 466777776643210 000
Q ss_pred --------------c-ccccCCcccccChHHHHHHHHh---CC-CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCC
Q 008664 296 --------------L-SKSVGGTRVEVNHDAIEFLCSN---CD-GDARVALNALEISAITAAVRVPVKEVKEVEQEDESD 356 (558)
Q Consensus 296 --------------~-~~~~~~~~~~i~~~al~~La~~---s~-Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~ 356 (558)
+ ..+..-..+.++++.+++|++. ++ -.+|..+.+++.+...+..+ |
T Consensus 242 ~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~-------------G-- 306 (350)
T CHL00081 242 REKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE-------------G-- 306 (350)
T ss_pred hhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc-------------C--
Confidence 0 0000125688999999999887 22 26999999999988887763 5
Q ss_pred CCCCCccccCHHHHHHHHhh
Q 008664 357 GCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 357 ~~~~~~~~It~e~v~~~l~~ 376 (558)
...|+.+||+.+..-
T Consensus 307 -----R~~V~pdDv~~~a~~ 321 (350)
T CHL00081 307 -----RTEVTPKDIFKVITL 321 (350)
T ss_pred -----CCCCCHHHHHHHHHH
Confidence 678999999998764
No 163
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-14 Score=150.16 Aligned_cols=229 Identities=25% Similarity=0.337 Sum_probs=155.6
Q ss_pred hhhcCCCCCCccccccccCCchHHHHHHHHcC------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSN------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 125 ~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+..++..++|+.|.+.+. ..+...+--. ...++||.||||+|||.|+++||-+.+ ..|+.++
T Consensus 144 ~~~~~~v~~~di~gl~~~k---~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~--atff~iS 218 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAK---QSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG--ATFFNIS 218 (428)
T ss_pred hccCCcccccCCcchhhHH---HHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc--ceEeecc
Confidence 3445566788888877665 5554444321 237899999999999999999999999 9999998
Q ss_pred cccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH------------HHHHHHhhHh-----cCcEEE
Q 008664 193 AVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS------------QQDSFLPVIE-----DGSIVF 248 (558)
Q Consensus 193 ~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~------------~~~~Ll~~le-----~~~iil 248 (558)
++.. ++.-++.+|.-++.. .+.|+||||||.+... .-+.|+++.- +.++++
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~-----qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSL-----QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhc-----CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 8654 455677778777654 8899999999987321 2234444432 257889
Q ss_pred EeccCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC----CH
Q 008664 249 IGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG----DA 323 (558)
Q Consensus 249 I~att~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G----d~ 323 (558)
|||| |.++.++.++++||. ++.++.|+.+....++...+.+ ....+.+..++.|++.+.| |+
T Consensus 294 igaT--N~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~-----------~~~~l~~~d~~~l~~~Tegysgsdi 360 (428)
T KOG0740|consen 294 IGAT--NRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE-----------QPNGLSDLDISLLAKVTEGYSGSDI 360 (428)
T ss_pred EecC--CCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh-----------CCCCccHHHHHHHHHHhcCcccccH
Confidence 9988 888899999999995 6778888888888899999887 5667788889999998555 44
Q ss_pred HHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCc
Q 008664 324 RVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGE 386 (558)
Q Consensus 324 R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~ 386 (558)
..+ +..+...................+. ...|+..+++.++......+...+.
T Consensus 361 ~~l---~kea~~~p~r~~~~~~~~~~~~~~~-------~r~i~~~df~~a~~~i~~~~s~~~l 413 (428)
T KOG0740|consen 361 TAL---CKEAAMGPLRELGGTTDLEFIDADK-------IRPITYPDFKNAFKNIKPSVSLEGL 413 (428)
T ss_pred HHH---HHHhhcCchhhcccchhhhhcchhc-------cCCCCcchHHHHHHhhccccCcccc
Confidence 333 3333221111000000000001111 3568888888888776555555443
No 164
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.9e-15 Score=146.85 Aligned_cols=181 Identities=24% Similarity=0.420 Sum_probs=129.4
Q ss_pred CCCccccccccCCchHHHHHHHHcC--------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSN--------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG 197 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~--------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~ 197 (558)
+|+|+-|-+.++ ..++..+.-. ...++||+||||||||.+|+++|++.+ ..|+.++.+...
T Consensus 90 ~f~DIggLe~v~---~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVK---DALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANFINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHH---HHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--CCcceeeccccc
Confidence 678888888877 6666665431 136899999999999999999999999 888888876553
Q ss_pred HH-------HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH-----------HHHHHhhHhc------CcEEEEeccC
Q 008664 198 VK-------DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ-----------QDSFLPVIED------GSIVFIGATT 253 (558)
Q Consensus 198 ~~-------~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~-----------~~~Ll~~le~------~~iilI~att 253 (558)
.+ -++.+|.-+.+. .+++|||||+|.+.... -+.|...=+. .+++++|||
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl-----~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT- 238 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKL-----QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT- 238 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhc-----CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC-
Confidence 33 344444444433 78999999999875321 1112111111 347778888
Q ss_pred CCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNALE 331 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~Le 331 (558)
|..+.++.++++|+ +++++.-|+.++..+||+-+++. +.+. ++-.+..+++.+.| .-+++.+++.
T Consensus 239 -NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~-----------e~~e-~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 239 -NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK-----------EKLE-DDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred -CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc-----------cccC-cccCHHHHHHhcCCCcHHHHHHHHH
Confidence 77789999999997 78999999999999999999876 3333 33347788888877 4555666665
Q ss_pred HHHHH
Q 008664 332 ISAIT 336 (558)
Q Consensus 332 ~a~~~ 336 (558)
.+...
T Consensus 306 ~Aa~~ 310 (386)
T KOG0737|consen 306 LAALR 310 (386)
T ss_pred HHhHh
Confidence 55444
No 165
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.3e-14 Score=135.49 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=139.0
Q ss_pred CCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-- 196 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-- 196 (558)
+..|+-|-+-.. ..++.+++. ..++++|+|||||||||.|++++|+... ..|+.+..+..
T Consensus 153 sy~diggld~qk---qeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~firvvgsefvq 227 (408)
T KOG0727|consen 153 SYADIGGLDVQK---QEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEFVQ 227 (408)
T ss_pred cccccccchhhH---HHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hheeeeccHHHHH
Confidence 566676665443 555555543 3458999999999999999999999988 88999987654
Q ss_pred -----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcEEEEeccC
Q 008664 197 -----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSIVFIGATT 253 (558)
Q Consensus 197 -----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~iilI~att 253 (558)
|-.-++.+|.-++.. .+.||||||||.+. .+.|..|+.++.. ..+-+|.+|
T Consensus 228 kylgegprmvrdvfrlaken-----apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimat- 301 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKEN-----APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMAT- 301 (408)
T ss_pred HHhccCcHHHHHHHHHHhcc-----CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEec-
Confidence 556677887777553 78999999999763 4567777776644 457888888
Q ss_pred CCCCCCCcHHhhccc---ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRC---RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~---~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
|....++|+|++.. +.|.|+-++..+.+-++..+..+ ..+.-+-+.-+++++--.-+.-.+..++
T Consensus 302 -nradtldpallrpgrldrkiefplpdrrqkrlvf~titsk-----------m~ls~~vdle~~v~rpdkis~adi~aic 369 (408)
T KOG0727|consen 302 -NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK-----------MNLSDEVDLEDLVARPDKISGADINAIC 369 (408)
T ss_pred -CcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc-----------ccCCcccCHHHHhcCccccchhhHHHHH
Confidence 77789999999854 57999977777777677766655 2222222223344443222233344556
Q ss_pred HHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 331 EISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 331 e~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+.+-..+-.. + ...|...|++++....
T Consensus 370 qeagm~avr~-------------n-------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 370 QEAGMLAVRE-------------N-------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred HHHhHHHHHh-------------c-------ceeeeHHHHHHHHHhh
Confidence 6665554331 1 4578888888887653
No 166
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.9e-14 Score=134.59 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=150.1
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..++....+.+-+-|.+..+ +.++..++.. .+..+|||||||+|||.||+++|.... ..|+.
T Consensus 137 mVeKvPDStYeMiGgLd~QI---keIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~--c~fir 211 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQI---KEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIR 211 (404)
T ss_pred hhhhCCccHHHHhccHHHHH---HHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc--eEEEE
Confidence 45555444555455556666 6777776653 347899999999999999999999988 89999
Q ss_pred Eecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------Cc
Q 008664 191 LSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GS 245 (558)
Q Consensus 191 l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~ 245 (558)
++.+.. |..-++++|--++.. .++|||+||||.+. .+.|..+|.+++. ..
T Consensus 212 vsgselvqk~igegsrmvrelfvmareh-----apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred echHHHHHHHhhhhHHHHHHHHHHHHhc-----CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 987653 566678888877665 78999999999873 3456666666543 56
Q ss_pred EEEEeccCCCCCCCCcHHhhccc---ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-
Q 008664 246 IVFIGATTENPSFHLITPLLSRC---RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG- 321 (558)
Q Consensus 246 iilI~att~n~~~~l~~aL~sR~---~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G- 321 (558)
+-+|.+| |..+-++++|++.. +.|.|+|++.+...+||+-.-.+.+.- .++. +..|++.-+|
T Consensus 287 ikvimat--nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-------rgi~-----l~kiaekm~ga 352 (404)
T KOG0728|consen 287 IKVIMAT--NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-------RGIN-----LRKIAEKMPGA 352 (404)
T ss_pred eEEEEec--cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-------cccC-----HHHHHHhCCCC
Confidence 8889888 77778999999854 579999999999999998766552211 2322 5567776444
Q ss_pred CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 322 DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 322 d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+.-.+...+..+-.++-.+ - ..++|.+|++-++.+.
T Consensus 353 sgaevk~vcteagm~alre-------------r-------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 353 SGAEVKGVCTEAGMYALRE-------------R-------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ccchhhhhhhhhhHHHHHH-------------h-------hccccHHHHHHHHHHH
Confidence 3445555666666655431 1 4679999998877653
No 167
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.59 E-value=5.2e-14 Score=151.47 Aligned_cols=237 Identities=19% Similarity=0.245 Sum_probs=169.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHHHHh-----------hhhcCCceEEEEeC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDARKL-----------RVKSNKRTVLFVDE 225 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~il~IDE 225 (558)
...++++|++|+||+++|++++.... ...+|+.++|.......+...+...... ......+++|||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 36799999999999999999998765 4478999999887665555433211100 01223578999999
Q ss_pred CccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCCC-----CCcHHhhcccc--eeeccCCCH--HHHHH
Q 008664 226 VHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPSF-----HLITPLLSRCR--VLTLNPLKP--HDVEI 283 (558)
Q Consensus 226 id~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~~-----~l~~aL~sR~~--~i~~~~l~~--~~i~~ 283 (558)
||.|+...|..|+.+++++. +.+|++|+.++.. .+.+.|..|+. .+.++|+.+ +|+..
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~ 321 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPL 321 (441)
T ss_pred cccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHH
Confidence 99999999999999998854 4588888776532 35566666763 677888876 78999
Q ss_pred HHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCc
Q 008664 284 LLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYV 362 (558)
Q Consensus 284 iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (558)
++..++.++.... +.....+++++++.|..+ |+||+|++.++++.++..+..
T Consensus 322 l~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~----------------------- 374 (441)
T PRK10365 322 LAGHFLQRFAERN----RKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTG----------------------- 374 (441)
T ss_pred HHHHHHHHHHHHh----CCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----------------------
Confidence 9999888765543 234456999999999998 899999999999999876543
Q ss_pred cccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChH
Q 008664 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPL 442 (558)
Q Consensus 363 ~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~ 442 (558)
..|+.+++...+........ ...+ +.. + ..+.|.++..|.++.|.
T Consensus 375 ~~i~~~~l~~~~~~~~~~~~-----------------~~~~-------~~~-l------~~~e~~~i~~~l~~~~g---- 419 (441)
T PRK10365 375 EYISERELPLAIASTPIPLG-----------------QSQD-------IQP-L------VEVEKEVILAALEKTGG---- 419 (441)
T ss_pred CccchHhCchhhcccccCcc-----------------cccc-------hhh-H------HHHHHHHHHHHHHHhCC----
Confidence 36888877644321100000 0000 011 1 24778888888777766
Q ss_pred hHHHHHHHHHHHHHhCCchh
Q 008664 443 ALNQAVSCYQACHFLGMPEC 462 (558)
Q Consensus 443 a~~~~~~~~~a~~~~G~pe~ 462 (558)
+..+||+.|||+-.
T Consensus 420 ------n~~~aa~~Lgisr~ 433 (441)
T PRK10365 420 ------NKTEAARQLGITRK 433 (441)
T ss_pred ------CHHHHHHHhCCCHH
Confidence 68899999999754
No 168
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.59 E-value=2.1e-14 Score=160.10 Aligned_cols=209 Identities=24% Similarity=0.303 Sum_probs=147.4
Q ss_pred cCCCCCCccccccccCCchHHHHHHHHc---------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc---
Q 008664 128 MRPVNINDVVGQDHLLSPNSLLRSAVCS---------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT--- 195 (558)
Q Consensus 128 ~rp~~~~dviGq~~~i~~~~~l~~~i~~---------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~--- 195 (558)
....+|+++.|.+..+.....+..++.. ....+++|+||||||||+++++++++++ .+|+.+++.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHHhHH
Confidence 3345788898988776222333333221 1136799999999999999999999999 8899888753
Q ss_pred ----ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEEEEeccC
Q 008664 196 ----SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIVFIGATT 253 (558)
Q Consensus 196 ----~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~iilI~att 253 (558)
.+...++.++..+... .++||||||+|.+.. ...+.||..|+. ..+++|++|
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~-----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaT- 297 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKA-----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT- 297 (644)
T ss_pred hhhcccHHHHHHHHHHHHhc-----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEec-
Confidence 2456677777776443 679999999998842 134556655654 457778777
Q ss_pred CCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHH
Q 008664 254 ENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNA 329 (558)
Q Consensus 254 ~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~ 329 (558)
|....+++++++ || +.+.|+.|+.++...|++..+.+ ..+. .+..+..+++.+.| ....+.++
T Consensus 298 -N~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~-----------~~l~-~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 298 -NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR-----------VPLA-PDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred -CChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc-----------CCCC-CcCCHHHHHhhCCCCCHHHHHHH
Confidence 677789999997 77 68899999999999999988755 1111 11225568888777 66666777
Q ss_pred HHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 330 Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+..+...+... + ...|+.+++.+++.+.
T Consensus 365 ~~eAa~~a~r~-------------~-------~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 365 VNEAALFAARG-------------N-------KRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHHHHHHc-------------C-------CCcccHHHHHHHHHHH
Confidence 77776655431 2 4579999998887643
No 169
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.5e-14 Score=152.11 Aligned_cols=221 Identities=21% Similarity=0.346 Sum_probs=155.2
Q ss_pred ccccccccCCchHHHHHHHHcC------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHH-----
Q 008664 135 DVVGQDHLLSPNSLLRSAVCSN------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVR----- 202 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~~------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~----- 202 (558)
|-.|-+.+. .++...+.-. +.+.++|+||||+|||+|++.||+.++ ..|+.++-... .+.++|
T Consensus 324 dHYGLekVK---eRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--RkfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVK---ERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHH---HHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCEEEEecCccccHHHhcccccc
Confidence 455666665 5665555432 227899999999999999999999999 88888874332 233332
Q ss_pred -------HHHHHHHHhhhhcCCceEEEEeCCccCCHH----HHHHHHhhHhc-----------------CcEEEEeccCC
Q 008664 203 -------DAVEDARKLRVKSNKRTVLFVDEVHRFNKS----QQDSFLPVIED-----------------GSIVFIGATTE 254 (558)
Q Consensus 203 -------~~~~~~~~~~~~~~~~~il~IDEid~l~~~----~~~~Ll~~le~-----------------~~iilI~att~ 254 (558)
.++....+ ....+.+++|||||.|+.+ -..+||.+++- ..+.||+ |.
T Consensus 399 YIGamPGrIiQ~mkk---a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia--TA 473 (782)
T COG0466 399 YIGAMPGKIIQGMKK---AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA--TA 473 (782)
T ss_pred ccccCChHHHHHHHH---hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEe--ec
Confidence 12222222 2236679999999999764 45788888853 2355655 44
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhH---hcccccccCCcccccChHHHHHHHHh--CCCCHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV---NNGLSKSVGGTRVEVNHDAIEFLCSN--CDGDARVALNA 329 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~---~~~~~~~~~~~~~~i~~~al~~La~~--s~Gd~R~~~~~ 329 (558)
|....++.+|+.|..+|++..++.++-..|.++++-.. ..++ ....+.++++++..|.++ -...+|.+.+.
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL----~~~el~i~d~ai~~iI~~YTREAGVR~LeR~ 549 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGL----KKGELTITDEAIKDIIRYYTREAGVRNLERE 549 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCC----CccceeecHHHHHHHHHHHhHhhhhhHHHHH
Confidence 77778999999999999999999999999988876421 1122 235789999999999988 34468888888
Q ss_pred HHHHHHHhcccCCccchhhhhccccCCCCCCCc-cccCHHHHHHHHhhccccccC
Q 008664 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYV-ALVTLDDAKEAFQCKHLAYDR 383 (558)
Q Consensus 330 Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~It~e~v~~~l~~~~~~~d~ 383 (558)
+..++..+... ....... . ..|+..++++.++...+++++
T Consensus 550 i~ki~RK~~~~-------i~~~~~k-------~~~~i~~~~l~~yLG~~~f~~~~ 590 (782)
T COG0466 550 IAKICRKAAKK-------ILLKKEK-------SIVKIDEKNLKKYLGVPVFRYGK 590 (782)
T ss_pred HHHHHHHHHHH-------HHhcCcc-------cceeeCHHHHHHHhCCcccCccc
Confidence 88887765431 0000001 2 269999999999988776664
No 170
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=4.7e-14 Score=144.51 Aligned_cols=152 Identities=17% Similarity=0.280 Sum_probs=116.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCC-----------------------ceEEEEecc--------------------
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVS-----------------------YKFVCLSAV-------------------- 194 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~-----------------------~~~i~l~~~-------------------- 194 (558)
.+.+||+||+|+||+++|+.+|+.+.|. .++..+...
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 4789999999999999999999998642 123333211
Q ss_pred ----------cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcH
Q 008664 195 ----------TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLIT 262 (558)
Q Consensus 195 ----------~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~ 262 (558)
..+++++|++........ ..++..|+|||++|+|+...+|.||+.+|+ ..++||..|+ + ...+.+
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~-~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~-~-~~~LLp 177 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGT-HRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSA-R-IDRLLP 177 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCC-ccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEEC-C-hhhCcH
Confidence 236788888877665432 456789999999999999999999999999 5566777663 3 348999
Q ss_pred HhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 263 PLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 263 aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
+++|||+.+.|++++.+++..+|... + +++ .+.++..++|++..++.+++
T Consensus 178 TI~SRcq~i~~~~~~~~~~~~~L~~~---------------~--~~~--~~~~l~~~~Gsp~~Al~~~~ 227 (342)
T PRK06964 178 TILSRCRQFPMTVPAPEAAAAWLAAQ---------------G--VAD--ADALLAEAGGAPLAALALAS 227 (342)
T ss_pred HHHhcCEEEEecCCCHHHHHHHHHHc---------------C--CCh--HHHHHHHcCCCHHHHHHHHC
Confidence 99999999999999999999988752 1 222 22356778999999887763
No 171
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.57 E-value=1.5e-13 Score=137.30 Aligned_cols=185 Identities=18% Similarity=0.196 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHH---------HHHHHHHH-------
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDV---------RDAVEDAR------- 209 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i---------~~~~~~~~------- 209 (558)
+.+..++..+ .+++|+||||||||++|+.+|+.++ .+++.+++... ...++ +..+....
T Consensus 12 ~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~ 87 (262)
T TIGR02640 12 SRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLE 87 (262)
T ss_pred HHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhh
Confidence 4445555554 5799999999999999999999988 78888876543 11111 00111100
Q ss_pred ----------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc------------------EEEEeccCCCCC---C
Q 008664 210 ----------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS------------------IVFIGATTENPS---F 258 (558)
Q Consensus 210 ----------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~------------------iilI~att~n~~---~ 258 (558)
........+.+|+||||++++++.|+.|+.+|+++. +.+|++++...+ .
T Consensus 88 ~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 88 DIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred cccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 000011245799999999999999999999998642 345655532211 3
Q ss_pred CCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-----------CCCCHHHHH
Q 008664 259 HLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-----------CDGDARVAL 327 (558)
Q Consensus 259 ~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-----------s~Gd~R~~~ 327 (558)
.++++|++||..+.+..++.++..+|+.... .++++.++.+++. .. .+|.++
T Consensus 168 ~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~----------------~~~~~~~~~iv~~~~~~R~~~~~~~~-~~r~~i 230 (262)
T TIGR02640 168 ETQDALLDRLITIFMDYPDIDTETAILRAKT----------------DVAEDSAATIVRLVREFRASGDEITS-GLRASL 230 (262)
T ss_pred cccHHHHhhcEEEECCCCCHHHHHHHHHHhh----------------CCCHHHHHHHHHHHHHHHhhCCccCC-cHHHHH
Confidence 5688999999999999999998888888643 2344555554443 22 388998
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
.+.+.+..... ...++.++++++..
T Consensus 231 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 231 MIAEVATQQDI-----------------------PVDVDDEDFVDLCI 255 (262)
T ss_pred HHHHHHHHcCC-----------------------CCCCCcHHHHHHHH
Confidence 88888877643 24689999988765
No 172
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.57 E-value=1.2e-13 Score=136.67 Aligned_cols=201 Identities=22% Similarity=0.259 Sum_probs=146.1
Q ss_pred CCCccccccccCCchHHHHHHH-HcCCC-CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHH-HHHHH
Q 008664 132 NINDVVGQDHLLSPNSLLRSAV-CSNRL-PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVR-DAVED 207 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i-~~~~~-~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~-~~~~~ 207 (558)
.|+.++++...+ +.+.... +-... .++||.|++||||..+|++.+.... .+.+|+.+||.....+... ++|..
T Consensus 202 ~F~~~v~~S~~m---k~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~ 278 (511)
T COG3283 202 GFEQIVAVSPKM---KHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGH 278 (511)
T ss_pred chHHHhhccHHH---HHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcC
Confidence 466677766555 3332222 22222 6799999999999999999998875 4579999999876544332 22222
Q ss_pred HH-----HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCCcHHh
Q 008664 208 AR-----KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHLITPL 264 (558)
Q Consensus 208 ~~-----~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l~~aL 264 (558)
+. ........++.+|+|||..|++..|..||.++.+|+ +.+|++|..|.. .++...|
T Consensus 279 apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDL 358 (511)
T COG3283 279 APGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDL 358 (511)
T ss_pred CCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHH
Confidence 21 001122367899999999999999999999998864 568888866542 3556778
Q ss_pred hcccce--eeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcc
Q 008664 265 LSRCRV--LTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAV 339 (558)
Q Consensus 265 ~sR~~~--i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
..|..+ +.++|+.+ +++..+.+.++.+....+ +.....++++.+.+|.++ |+||+|++.|.+-+++.....
T Consensus 359 fyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~el----g~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg 434 (511)
T COG3283 359 FYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDEL----GVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEG 434 (511)
T ss_pred HHHhheeeecCCccccCcccchHHHHHHHHHHHHHh----CCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcc
Confidence 888864 56777776 777777777777655554 457778999999999998 999999999999999988654
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=3.1e-14 Score=163.17 Aligned_cols=227 Identities=21% Similarity=0.309 Sum_probs=152.8
Q ss_pred chhhhcccccCCCCCccCCCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCC--------C-CeEEEEcCCCch
Q 008664 100 PLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR--------L-PSIIFWGPPGTG 170 (558)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~--------~-~~~LL~GppGtG 170 (558)
++...+..++++|.......... -...+.-.-...++||+.++ ..+...+...+ + .+++|+||+|||
T Consensus 535 ~i~~vv~~~tgip~~~~~~~~~~-~l~~l~~~l~~~viGQ~~ai---~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~G 610 (857)
T PRK10865 535 EIAEVLARWTGIPVSRMLESERE-KLLRMEQELHHRVIGQNEAV---EAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVG 610 (857)
T ss_pred HHHHHHHHHHCCCchhhhhhHHH-HHHHHHHHhCCeEeCCHHHH---HHHHHHHHHHHhcccCCCCCCceEEEECCCCCC
Confidence 34444555555554433222111 11233344566799999998 77777776421 1 479999999999
Q ss_pred HHHHHHHHHHHhC-CCceEEEEecccccHH-HHHHH---------------HHHHHHhhhhcCCceEEEEeCCccCCHHH
Q 008664 171 KTTLAKAIVNSVA-VSYKFVCLSAVTSGVK-DVRDA---------------VEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233 (558)
Q Consensus 171 KTtLa~~la~~l~-~~~~~i~l~~~~~~~~-~i~~~---------------~~~~~~~~~~~~~~~il~IDEid~l~~~~ 233 (558)
||++|++||+.+. ....++.++++..... .+..+ +.+.. ...+++||||||++.+++..
T Consensus 611 KT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v----~~~p~~vLllDEieka~~~v 686 (857)
T PRK10865 611 KTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAV----RRRPYSVILLDEVEKAHPDV 686 (857)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHH----HhCCCCeEEEeehhhCCHHH
Confidence 9999999999875 2346777777543221 11111 11111 22356899999999999999
Q ss_pred HHHHHhhHhcCc-------------EEEEeccCCCC-----------------------CCCCcHHhhccc-ceeeccCC
Q 008664 234 QDSFLPVIEDGS-------------IVFIGATTENP-----------------------SFHLITPLLSRC-RVLTLNPL 276 (558)
Q Consensus 234 ~~~Ll~~le~~~-------------iilI~att~n~-----------------------~~~l~~aL~sR~-~~i~~~~l 276 (558)
++.|++++++|. .++|++|+... ...+.|+|++|+ .++.|.|+
T Consensus 687 ~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL 766 (857)
T PRK10865 687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPL 766 (857)
T ss_pred HHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCC
Confidence 999999998753 23555553210 123568999999 79999999
Q ss_pred CHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC---CCCHHHHHHHHHHHHHH
Q 008664 277 KPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC---DGDARVALNALEISAIT 336 (558)
Q Consensus 277 ~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s---~Gd~R~~~~~Le~a~~~ 336 (558)
+.+++..|+...+.+....+.+ .+..+.++++++++|++.. .-.+|.+.+.++..+..
T Consensus 767 ~~edl~~Iv~~~L~~l~~rl~~--~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~ 827 (857)
T PRK10865 767 GEQHIASIAQIQLQRLYKRLEE--RGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIEN 827 (857)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh--CCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHH
Confidence 9999999999999875443311 1134678999999999973 23688888888877654
No 174
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.56 E-value=1.7e-13 Score=155.96 Aligned_cols=172 Identities=23% Similarity=0.370 Sum_probs=128.4
Q ss_pred CCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
...+|+++.|.+..+ ..++.++.. ....++||+||||||||++++++|+.++ ..++.+++..
T Consensus 173 ~~~~~~di~G~~~~~---~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAK---EKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeEEEEecHH
Confidence 345889999999887 777776643 1236899999999999999999999998 7888887643
Q ss_pred c-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEeccC
Q 008664 196 S-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGATT 253 (558)
Q Consensus 196 ~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~att 253 (558)
. ....++.++..+... .++||||||||.+.. ..++.|+.+|+. +.+++|++|
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~~~-----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at- 321 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAEEN-----APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT- 321 (733)
T ss_pred HhcccccHHHHHHHHHHHHHHhc-----CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec-
Confidence 2 345577777776442 678999999998742 356778888864 567788777
Q ss_pred CCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCccccc-ChHHHHHHHHhCCCCHHH
Q 008664 254 ENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV-NHDAIEFLCSNCDGDARV 325 (558)
Q Consensus 254 ~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i-~~~al~~La~~s~Gd~R~ 325 (558)
|....+++++++ || ..+.+..|+.++...|++..... ..+ ++..++.+++.+.|-...
T Consensus 322 -n~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-------------~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 322 -NRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-------------MPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred -CChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-------------CCCccccCHHHHHHhCCCCCHH
Confidence 666688999987 66 47889999999999999865432 222 234578888888875443
No 175
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.56 E-value=1.3e-13 Score=142.18 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=102.1
Q ss_pred CceEEEEeCCccCCH------------HHHHHHHhhHhc------------CcEEEEeccCCC--CCCCCcHHhhccc-c
Q 008664 217 KRTVLFVDEVHRFNK------------SQQDSFLPVIED------------GSIVFIGATTEN--PSFHLITPLLSRC-R 269 (558)
Q Consensus 217 ~~~il~IDEid~l~~------------~~~~~Ll~~le~------------~~iilI~att~n--~~~~l~~aL~sR~-~ 269 (558)
..+||||||||++.. ..|..||+++|. .++.||++..-+ ....+.|+|.-|+ .
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 678999999998853 378999999987 346677665422 1235789999999 4
Q ss_pred eeeccCCCHHHHHHHH----HHHHHhHhcccccccCCcccccChHHHHHHHHhC--------CCCHHHHHHHHHHHHHHh
Q 008664 270 VLTLNPLKPHDVEILL----KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC--------DGDARVALNALEISAITA 337 (558)
Q Consensus 270 ~i~~~~l~~~~i~~iL----~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s--------~Gd~R~~~~~Le~a~~~a 337 (558)
++.+.+|+.+++..|| ...+++|...+ +. .+-.+.++++++..||+.+ +-.+|.+..+++.++.-.
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf-~~-egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~ 404 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALM-KT-EGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDI 404 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHH-hh-cCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 7889999999999999 33455544333 11 2356778999999999873 557999999999988654
Q ss_pred cccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 338 AVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.-+.+. .......||.+.|++-+...
T Consensus 405 ~fe~p~--------------~~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 405 SFEAPD--------------LSGQNITIDADYVSKKLGAL 430 (441)
T ss_pred HhcCCC--------------CCCCEEEECHHHHHhHHHHH
Confidence 321110 01113568888887766643
No 176
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=7.9e-14 Score=145.85 Aligned_cols=194 Identities=22% Similarity=0.375 Sum_probs=130.1
Q ss_pred ccccccccCCchHHHHHHHHc----------CC--------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 135 DVVGQDHLLSPNSLLRSAVCS----------NR--------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~----------~~--------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
-++||++++ +.+..++.+ .. ..++||+||||||||++|+++|+.++ .+|..+++...
T Consensus 78 ~ViGQe~A~---~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~--~pf~~~da~~L 152 (413)
T TIGR00382 78 YVIGQEQAK---KVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN--VPFAIADATTL 152 (413)
T ss_pred eecCHHHHH---HHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC--CCeEEechhhc
Confidence 379999998 766655521 11 25899999999999999999999998 77777766542
Q ss_pred cH-----HHHHHHHHHHHHh---hhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhcC---------c
Q 008664 197 GV-----KDVRDAVEDARKL---RVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIEDG---------S 245 (558)
Q Consensus 197 ~~-----~~i~~~~~~~~~~---~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~~---------~ 245 (558)
.. .+....+...... ......++||||||||.+++ ..|+.||++||.. +
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 11 1223333322111 01223567999999999987 5899999999631 1
Q ss_pred ------EEEEeccCCCC--------------------------------------------------CCCCcHHhhccc-
Q 008664 246 ------IVFIGATTENP--------------------------------------------------SFHLITPLLSRC- 268 (558)
Q Consensus 246 ------iilI~att~n~--------------------------------------------------~~~l~~aL~sR~- 268 (558)
.++|.++ |. .+.+.|+|+.|+
T Consensus 233 ~~~~~~~i~i~Ts--Nilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTS--NILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLP 310 (413)
T ss_pred cccCCCeEEEEcC--CceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCC
Confidence 1222221 11 011557888898
Q ss_pred ceeeccCCCHHHHHHHHHHH----HHhHhcccccccCCcccccChHHHHHHHHhC---CCCHHHHHHHHHHHHHHh
Q 008664 269 RVLTLNPLKPHDVEILLKRA----VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC---DGDARVALNALEISAITA 337 (558)
Q Consensus 269 ~~i~~~~l~~~~i~~iL~~~----l~~~~~~~~~~~~~~~~~i~~~al~~La~~s---~Gd~R~~~~~Le~a~~~a 337 (558)
.++.|.||+.+++..|+... +.++...+.. .+-.+.++++++++|++.+ .-.+|.+.++++..+.-.
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~--~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKM--DNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhcc--CCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 47889999999999999874 4433332211 2356788999999999973 346888888888876543
No 177
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=1.3e-13 Score=142.39 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=102.2
Q ss_pred CceEEEEeCCccCCH------------HHHHHHHhhHhc------------CcEEEEeccCCC--CCCCCcHHhhcccc-
Q 008664 217 KRTVLFVDEVHRFNK------------SQQDSFLPVIED------------GSIVFIGATTEN--PSFHLITPLLSRCR- 269 (558)
Q Consensus 217 ~~~il~IDEid~l~~------------~~~~~Ll~~le~------------~~iilI~att~n--~~~~l~~aL~sR~~- 269 (558)
..+||||||||.+.. ..|..||+++|. .++.||++..-+ ....+.|+|..|+-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 568999999998853 378999999987 346677665321 12357899999994
Q ss_pred eeeccCCCHHHHHHHHH----HHHHhHhcccccccCCcccccChHHHHHHHHhC--------CCCHHHHHHHHHHHHHHh
Q 008664 270 VLTLNPLKPHDVEILLK----RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC--------DGDARVALNALEISAITA 337 (558)
Q Consensus 270 ~i~~~~l~~~~i~~iL~----~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s--------~Gd~R~~~~~Le~a~~~a 337 (558)
++.+.+|+.+++..||. ..+.+|...+.. .+-.+.+++++++.||+.+ +-.+|.+..+++.++.-.
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~--egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~ 406 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLAT--EGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDI 406 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhh--cCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 78899999999999994 366665444311 2356788999999999873 457899999999988654
Q ss_pred cccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 338 AVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.-+.+ .. ......||.+.|+.-+...
T Consensus 407 ~Fe~p--------~~------~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 407 SFEAP--------DM------SGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred hccCC--------CC------CCCEEEECHHHHHHHHHHH
Confidence 32110 00 1113568888887766543
No 178
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.54 E-value=9e-13 Score=132.24 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=124.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCC-ceEEEEecccccHHH---------------------HHHHHHHHHHhhhhc
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVS-YKFVCLSAVTSGVKD---------------------VRDAVEDARKLRVKS 215 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~-~~~i~l~~~~~~~~~---------------------i~~~~~~~~~~~~~~ 215 (558)
.+.++|+||+|+||||+++.+++.+... ..+..+........+ ++.+...... ....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~-~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE-QFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH-HHhC
Confidence 3579999999999999999999987622 221121111111111 1111111111 1124
Q ss_pred CCceEEEEeCCccCCHHHHHHHHhhHhc----Cc-EEEEeccCCCCC----CCCcHHhhccc-ceeeccCCCHHHHHHHH
Q 008664 216 NKRTVLFVDEVHRFNKSQQDSFLPVIED----GS-IVFIGATTENPS----FHLITPLLSRC-RVLTLNPLKPHDVEILL 285 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~~~~~Ll~~le~----~~-iilI~att~n~~----~~l~~aL~sR~-~~i~~~~l~~~~i~~iL 285 (558)
+...+|+|||+|.+.....+.|..+.+. +. +.++.+.+.... ..-...+.+|+ ..+.+++++.+++..++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 5678999999999998877776554432 22 233333322111 11123567775 57889999999999999
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCcccc
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALV 365 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~I 365 (558)
...+..... .....+++++++.|++.++|++|.+..++..+...+..+ + ...|
T Consensus 202 ~~~l~~~g~-------~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~-------------~-------~~~i 254 (269)
T TIGR03015 202 EHRLERAGN-------RDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLE-------------E-------KREI 254 (269)
T ss_pred HHHHHHcCC-------CCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHc-------------C-------CCCC
Confidence 998875110 134568999999999999999999999999887776442 2 4579
Q ss_pred CHHHHHHHHhh
Q 008664 366 TLDDAKEAFQC 376 (558)
Q Consensus 366 t~e~v~~~l~~ 376 (558)
+.++|++++..
T Consensus 255 ~~~~v~~~~~~ 265 (269)
T TIGR03015 255 GGEEVREVIAE 265 (269)
T ss_pred CHHHHHHHHHH
Confidence 99999998874
No 179
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.1e-14 Score=145.92 Aligned_cols=299 Identities=19% Similarity=0.219 Sum_probs=183.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec-------ccccHHHHHHHHHHHHHhhhhc---CCceEEEEeCCcc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-------VTSGVKDVRDAVEDARKLRVKS---NKRTVLFVDEVHR 228 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~-------~~~~~~~i~~~~~~~~~~~~~~---~~~~il~IDEid~ 228 (558)
..+|||||||||||.+||.|.+.++...+-+ +|. +..+++.+|.+|.++....... +.-.||++||||.
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKI-VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDA 335 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKI-VNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDA 335 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcc-cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHH
Confidence 6799999999999999999999998433322 222 3447889999999997653232 3457999999998
Q ss_pred CCH-------------HHHHHHHhhHhc----CcEEEEeccCCCCCCCCcHHhhc--ccc-eeeccCCCHHHHHHHHHHH
Q 008664 229 FNK-------------SQQDSFLPVIED----GSIVFIGATTENPSFHLITPLLS--RCR-VLTLNPLKPHDVEILLKRA 288 (558)
Q Consensus 229 l~~-------------~~~~~Ll~~le~----~~iilI~att~n~~~~l~~aL~s--R~~-~i~~~~l~~~~i~~iL~~~ 288 (558)
+.+ ...+.||.-|+. ..+.+||.| |..+.++.+|++ |+. ..++.-|++.-..+|++-.
T Consensus 336 ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT--NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 336 ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT--NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEecc--CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 744 467889988876 679999999 788899999998 453 4667777777777777765
Q ss_pred HHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcccC---CccchhhhhccccCCCCCCCccc
Q 008664 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNALEISAITAAVRV---PVKEVKEVEQEDESDGCSPYVAL 364 (558)
Q Consensus 289 l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~Le~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 364 (558)
-++.... ....-.++ ++.|+..+.. .--.+..++..|...+-.+. ..+ ....+. ......
T Consensus 414 T~rMre~-----~~l~~dVd---l~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~-~~~~~~-------~~e~lk 477 (744)
T KOG0741|consen 414 TKRMREN-----NKLSADVD---LKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGK-VEVDPV-------AIENLK 477 (744)
T ss_pred hhhhhhc-----CCCCCCcC---HHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcc-eecCch-------hhhhee
Confidence 5542221 11233333 4555554221 12223333333333322210 101 111111 122567
Q ss_pred cCHHHHHHHHhhccccccCCCcchHHHHHHHHHH--hcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccc-----
Q 008664 365 VTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKS--MRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVG----- 437 (558)
Q Consensus 365 It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks--~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edig----- 437 (558)
||.+|+-.++......|....++ ++.+... +.-+.+ ..+.++.| .-+++. .-.+|-.+
T Consensus 478 V~r~DFl~aL~dVkPAFG~see~----l~~~~~~Gmi~~g~~------v~~il~~G---~llv~q--vk~s~~s~lvSvL 542 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAFGISEED----LERFVMNGMINWGPP------VTRILDDG---KLLVQQ--VKNSERSPLVSVL 542 (744)
T ss_pred ecHHHHHHHHHhcCcccCCCHHH----HHHHHhCCceeeccc------HHHHHhhH---HHHHHH--hhccccCcceEEE
Confidence 99999999888766666553321 2222220 000110 11222222 011111 11223222
Q ss_pred cCChHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 008664 438 LADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQK 491 (558)
Q Consensus 438 la~~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~ 491 (558)
++-|..-..+.-|.+++...++|--+++.++-.|.|..+.|-+.+-.++.+|++
T Consensus 543 l~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 543 LEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred EecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhc
Confidence 355666667777889999999999999999999999999999988777777765
No 180
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.53 E-value=6.8e-14 Score=124.18 Aligned_cols=105 Identities=30% Similarity=0.571 Sum_probs=83.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~ 233 (558)
+||+||||||||++++.+|+.++ .+++.+++... ....+..++..+... ..++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS----AKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT----STSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--ccccccccccccccccccccccccccccccccc----ccceeeeeccchhccccc
Confidence 68999999999999999999999 99999998654 345566677766443 147999999999998776
Q ss_pred -----------HHHHHhhHhc-----CcEEEEeccCCCCCCCCcHHhh-cccc-eeec
Q 008664 234 -----------QDSFLPVIED-----GSIVFIGATTENPSFHLITPLL-SRCR-VLTL 273 (558)
Q Consensus 234 -----------~~~Ll~~le~-----~~iilI~att~n~~~~l~~aL~-sR~~-~i~~ 273 (558)
.+.|+..++. ..+++|++| |....++++++ +||. .+.+
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~tt--n~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATT--NSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEE--SSGGGSCHHHHSTTSEEEEEE
T ss_pred ccccccccccccceeeecccccccccccceeEEee--CChhhCCHhHHhCCCcEEEEc
Confidence 7788888876 347888877 55678999999 9985 4544
No 181
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-13 Score=145.18 Aligned_cols=180 Identities=22% Similarity=0.339 Sum_probs=134.8
Q ss_pred CCCccccccccCCchHHHHHHHHcCC-------------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc----
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNR-------------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV---- 194 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~-------------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~---- 194 (558)
.++|+-|-.++. +.+...+.... ..++|||||||||||.||.++|...+ ..|+.+...
T Consensus 665 ~w~digg~~~~k---~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--~~fisvKGPElL~ 739 (952)
T KOG0735|consen 665 RWEDIGGLFEAK---KVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--LRFISVKGPELLS 739 (952)
T ss_pred CceecccHHHHH---HHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--eeEEEecCHHHHH
Confidence 467787877776 77777776543 15799999999999999999999998 999988763
Q ss_pred ---cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEeccCCCC
Q 008664 195 ---TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGATTENP 256 (558)
Q Consensus 195 ---~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~att~n~ 256 (558)
..+++.+|.+|+.++.. +++|||+||+|.+.+ ...+.||.-|+. ..+.++++|+ .
T Consensus 740 KyIGaSEq~vR~lF~rA~~a-----~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs--R 812 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSA-----KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS--R 812 (952)
T ss_pred HHhcccHHHHHHHHHHhhcc-----CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC--C
Confidence 34778899999998654 899999999998854 367889988876 3466677774 3
Q ss_pred CCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC----CHHHHHHH
Q 008664 257 SFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG----DARVALNA 329 (558)
Q Consensus 257 ~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G----d~R~~~~~ 329 (558)
.+.++++|++ |+ ..+..+.|+..+..+|++..... ...-++-.++.++..+.| |+..++..
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s------------~~~~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS------------LLKDTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc------------cCCccccchHHHhhhcCCCchhhHHHHHHH
Confidence 3589999998 44 46788888999999999876543 112234557888887555 66666555
Q ss_pred HHHHHH
Q 008664 330 LEISAI 335 (558)
Q Consensus 330 Le~a~~ 335 (558)
.+.+..
T Consensus 881 A~l~av 886 (952)
T KOG0735|consen 881 AQLAAV 886 (952)
T ss_pred HHHHHH
Confidence 554443
No 182
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.53 E-value=6e-13 Score=140.10 Aligned_cols=217 Identities=18% Similarity=0.239 Sum_probs=136.4
Q ss_pred CccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHH------HHHHHH
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDV------RDAVED 207 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i------~~~~~~ 207 (558)
..|+|+++.+ +.+..++..+ .++||+||||||||++|+++++.+....+|..+.+......++ ......
T Consensus 20 ~~i~gre~vI---~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~ 94 (498)
T PRK13531 20 KGLYERSHAI---RLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE 94 (498)
T ss_pred hhccCcHHHH---HHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhc
Confidence 3488999888 7776666655 6899999999999999999999876322444333321111221 111111
Q ss_pred HHHhhhhcC---CceEEEEeCCccCCHHHHHHHHhhHhcCc------------EEEEeccCCCC-CCCCcHHhhcccc-e
Q 008664 208 ARKLRVKSN---KRTVLFVDEVHRFNKSQQDSFLPVIEDGS------------IVFIGATTENP-SFHLITPLLSRCR-V 270 (558)
Q Consensus 208 ~~~~~~~~~---~~~il~IDEid~l~~~~~~~Ll~~le~~~------------iilI~att~n~-~~~l~~aL~sR~~-~ 270 (558)
........+ ...+||+|||+++++..|+.||..|+++. ..++++|++-| .....+++..||. .
T Consensus 95 g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFlir 174 (498)
T PRK13531 95 GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIR 174 (498)
T ss_pred CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEE
Confidence 000000111 23489999999999999999999997743 23444442222 1234568999995 5
Q ss_pred eeccCCCH-HHHHHHHHHHHHhHhccc------------ccccCCcccccChHHHHHHHHhC------C----CCHHHHH
Q 008664 271 LTLNPLKP-HDVEILLKRAVDDVNNGL------------SKSVGGTRVEVNHDAIEFLCSNC------D----GDARVAL 327 (558)
Q Consensus 271 i~~~~l~~-~~i~~iL~~~l~~~~~~~------------~~~~~~~~~~i~~~al~~La~~s------~----Gd~R~~~ 327 (558)
+.+++++. ++..++|........... .....-..+.+++.++++|.+.. . -+.|..+
T Consensus 175 i~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~ 254 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWK 254 (498)
T ss_pred EECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHH
Confidence 77888874 555777765321000000 00001256788888888887762 2 3678888
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.++..+.+.|..+ | ...|+++|++ ++..
T Consensus 255 ~l~~~akA~A~l~-------------G-------R~~V~p~Dv~-ll~~ 282 (498)
T PRK13531 255 KAIRLLQASAFFS-------------G-------RDAIAPIDLI-LLKD 282 (498)
T ss_pred HHHHHHHHHHHHC-------------C-------CCCCCHHHHH-HhHH
Confidence 8888777776653 5 6789999999 5553
No 183
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.53 E-value=9.2e-14 Score=142.37 Aligned_cols=221 Identities=21% Similarity=0.250 Sum_probs=143.5
Q ss_pred CCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-------Cce------------------
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-------SYK------------------ 187 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-------~~~------------------ 187 (558)
|..|+||++.+ ..+.-.+-.....+++|.|+||+||||++++++..+.. ...
T Consensus 3 f~~ivgq~~~~---~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 79 (337)
T TIGR02030 3 FTAIVGQDEMK---LALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVD 79 (337)
T ss_pred ccccccHHHHH---HHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhh
Confidence 67899999987 66655555666788999999999999999999988731 000
Q ss_pred -------------EEEEec--cc---ccHHHHHHHHHHH----HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc
Q 008664 188 -------------FVCLSA--VT---SGVKDVRDAVEDA----RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245 (558)
Q Consensus 188 -------------~i~l~~--~~---~~~~~i~~~~~~~----~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~ 245 (558)
+..+.. .. .|.-++...+..- .........+++|||||+++++...|+.|+..|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~ 159 (337)
T TIGR02030 80 SQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGW 159 (337)
T ss_pred cccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCC
Confidence 011000 00 0222222222111 0011122356899999999999999999999998753
Q ss_pred E-------------EEEeccCCCCC-CCCcHHhhcccc-eeeccCCCH-HHHHHHHHHHHHh----------Hh------
Q 008664 246 I-------------VFIGATTENPS-FHLITPLLSRCR-VLTLNPLKP-HDVEILLKRAVDD----------VN------ 293 (558)
Q Consensus 246 i-------------ilI~att~n~~-~~l~~aL~sR~~-~i~~~~l~~-~~i~~iL~~~l~~----------~~------ 293 (558)
+ .++..+|.|+. ..+.++|+.||. .+.+.+++. ++..+++++.... +.
T Consensus 160 ~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~ 239 (337)
T TIGR02030 160 NVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEAL 239 (337)
T ss_pred eEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcC
Confidence 1 13333344654 468999999995 567777765 6667777663211 00
Q ss_pred -ccc-ccccCCcccccChHHHHHHHHh---CCC-CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCH
Q 008664 294 -NGL-SKSVGGTRVEVNHDAIEFLCSN---CDG-DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367 (558)
Q Consensus 294 -~~~-~~~~~~~~~~i~~~al~~La~~---s~G-d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~ 367 (558)
..+ ..+..-..+.+++++++++++. .+. .+|..+.++..+...+..+ | ...|+.
T Consensus 240 ~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~-------------G-------R~~V~~ 299 (337)
T TIGR02030 240 QAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE-------------G-------RTEVTV 299 (337)
T ss_pred HHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc-------------C-------CCCCCH
Confidence 000 0000015678999999998876 333 5799999999988887763 4 678999
Q ss_pred HHHHHHHhh
Q 008664 368 DDAKEAFQC 376 (558)
Q Consensus 368 e~v~~~l~~ 376 (558)
+||+.+..-
T Consensus 300 dDv~~~a~~ 308 (337)
T TIGR02030 300 DDIRRVAVL 308 (337)
T ss_pred HHHHHHHHH
Confidence 999987663
No 184
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-13 Score=131.65 Aligned_cols=201 Identities=24% Similarity=0.314 Sum_probs=137.9
Q ss_pred CCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc---
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV--- 194 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~--- 194 (558)
...+|+-|-+..+ ..|..++-.. .+..+|+|||||||||.+|++.|.+.+ ..|+.+.+.
T Consensus 168 E~YsDiGGldkQI---qELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~--aTFLKLAgPQLV 242 (424)
T KOG0652|consen 168 EQYSDIGGLDKQI---QELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN--ATFLKLAGPQLV 242 (424)
T ss_pred ccccccccHHHHH---HHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc--chHHHhcchHHH
Confidence 3567788877776 6666666442 236899999999999999999999988 777666542
Q ss_pred ----cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcEEEEecc
Q 008664 195 ----TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSIVFIGAT 252 (558)
Q Consensus 195 ----~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~iilI~at 252 (558)
..|..-+|..|.-+.. ..+.||||||+|.+. .+.|..+|.++.. ..+-+|++|
T Consensus 243 QMfIGdGAkLVRDAFaLAKE-----kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAAT 317 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKE-----KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAAT 317 (424)
T ss_pred hhhhcchHHHHHHHHHHhhc-----cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeec
Confidence 2355666666665543 378999999999763 3466666666543 468899988
Q ss_pred CCCCCCCCcHHhhccc---ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh-HHHHHHHHhCCC-CHHHHH
Q 008664 253 TENPSFHLITPLLSRC---RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH-DAIEFLCSNCDG-DARVAL 327 (558)
Q Consensus 253 t~n~~~~l~~aL~sR~---~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~-~al~~La~~s~G-d~R~~~ 327 (558)
|...-++|+|++.. +.|.|+-++++....|++....+ ..+++ --.+.|++.+++ |.-++.
T Consensus 318 --NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK-------------Mnv~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 318 --NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK-------------MNVSDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred --ccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh-------------cCCCCCCCHHHHhhcccccCchhhe
Confidence 77778999999844 58999999998888888766544 22222 236677777543 445555
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
..+-.+-..+-.+ + ...|+.+|+-+.+..
T Consensus 383 AVcVEAGMiALRr-------------~-------atev~heDfmegI~e 411 (424)
T KOG0652|consen 383 AVCVEAGMIALRR-------------G-------ATEVTHEDFMEGILE 411 (424)
T ss_pred eeehhhhHHHHhc-------------c-------cccccHHHHHHHHHH
Confidence 5444444333221 2 346888887666543
No 185
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=3.7e-13 Score=134.10 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=118.2
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC--------------CceEEEEecc----cccHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV--------------SYKFVCLSAV----TSGVKDVRDAVED 207 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~--------------~~~~i~l~~~----~~~~~~i~~~~~~ 207 (558)
+.+.+.+..++. +.+||+||+|+||+++|..+|+.+.| +.++..+... ..+++++|++.+.
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~ 86 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQ 86 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHH
Confidence 678888888886 67889999999999999999999864 2344444332 2468889988887
Q ss_pred HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHH
Q 008664 208 ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285 (558)
Q Consensus 208 ~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL 285 (558)
....+ ..+...|++||++|.|+.+.++.||+++|+ ..++||..|+ + ...+.++++|||+.+.|+++.
T Consensus 87 ~~~~p-~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~-~-~~~ll~TI~SRcq~~~~~~~~-------- 155 (290)
T PRK05917 87 IWIHP-YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSA-K-PQRLPPTIRSRSLSIHIPMEE-------- 155 (290)
T ss_pred HhhCc-cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeC-C-hhhCcHHHHhcceEEEccchh--------
Confidence 76543 557889999999999999999999999999 5566766663 3 348899999999999998861
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHH
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDAR 324 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R 324 (558)
. . .++++....++..++|+++
T Consensus 156 -----~-----------~--~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 156 -----K-----------T--LVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred -----c-----------c--CCCHHHHHHHHHHhCCChh
Confidence 1 1 2677888888889999886
No 186
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-13 Score=131.85 Aligned_cols=147 Identities=29% Similarity=0.380 Sum_probs=115.2
Q ss_pred CCCCccccccccCCchHHHHHHHHcCC-------------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSNR-------------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~~-------------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
.+..|+-|-++.+ ..++..++..- +..+|+|||||||||.+|+++|+... ..|+.+-.+..
T Consensus 174 vty~dvggckeqi---eklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfirvigselv 248 (435)
T KOG0729|consen 174 VTYSDVGGCKEQI---EKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVIGSELV 248 (435)
T ss_pred cccccccchHHHH---HHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeehhHHHH
Confidence 4778888888777 78888777642 36899999999999999999999998 88988876543
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcEEEEecc
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSIVFIGAT 252 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~iilI~at 252 (558)
|..-++++|+-++.. +.+|||+||||.+. .+.|..+|.++.. |.+-++.+|
T Consensus 249 qkyvgegarmvrelf~martk-----kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmat 323 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTK-----KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMAT 323 (435)
T ss_pred HHHhhhhHHHHHHHHHHhccc-----ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeec
Confidence 566788888887553 67999999999773 3467777777643 788888888
Q ss_pred CCCCCCCCcHHhhccc---ceeeccCCCHHHHHHHHHHHH
Q 008664 253 TENPSFHLITPLLSRC---RVLTLNPLKPHDVEILLKRAV 289 (558)
Q Consensus 253 t~n~~~~l~~aL~sR~---~~i~~~~l~~~~i~~iL~~~l 289 (558)
|....++++|++.. +.+.|.-++.+-...|++...
T Consensus 324 --nrpdtldpallrpgrldrkvef~lpdlegrt~i~kiha 361 (435)
T KOG0729|consen 324 --NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHA 361 (435)
T ss_pred --CCCCCcCHhhcCCcccccceeccCCcccccceeEEEec
Confidence 77779999999844 478888887777777766543
No 187
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=3.8e-13 Score=149.95 Aligned_cols=218 Identities=23% Similarity=0.333 Sum_probs=145.8
Q ss_pred CCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-----------------------------
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA----------------------------- 183 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~----------------------------- 183 (558)
|.+|+||++++ ..+..+.......++||.|++|||||++|++|++.+.
T Consensus 3 f~~ivGq~~~~---~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~ 79 (633)
T TIGR02442 3 FTAIVGQEDLK---LALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYR 79 (633)
T ss_pred cchhcChHHHH---HHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccc
Confidence 67899999987 7777777777778899999999999999999999882
Q ss_pred ----CCceEEEEecccc-----cHHHHHHHHHHHH----HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-----
Q 008664 184 ----VSYKFVCLSAVTS-----GVKDVRDAVEDAR----KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS----- 245 (558)
Q Consensus 184 ----~~~~~i~l~~~~~-----~~~~i~~~~~~~~----~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~----- 245 (558)
...+|+.+.+... |..++...+.... ........+++||||||++|+...|+.|+..|+++.
T Consensus 80 ~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r 159 (633)
T TIGR02442 80 PSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVER 159 (633)
T ss_pred ccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEE
Confidence 0245666544322 2222332222110 011112356899999999999999999999998763
Q ss_pred ----------EEEEeccCCCCC-CCCcHHhhcccc-eeeccCCC-HHHHHHHHHHHHHhHh-----------------cc
Q 008664 246 ----------IVFIGATTENPS-FHLITPLLSRCR-VLTLNPLK-PHDVEILLKRAVDDVN-----------------NG 295 (558)
Q Consensus 246 ----------iilI~att~n~~-~~l~~aL~sR~~-~i~~~~l~-~~~i~~iL~~~l~~~~-----------------~~ 295 (558)
+++|+++ |+. ..+.++|++||. .+.+.++. .++..+++.+.+.... ..
T Consensus 160 ~g~~~~~~~~~~lIat~--np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (633)
T TIGR02442 160 EGLSVSHPARFVLIGTM--NPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNR 237 (633)
T ss_pred CCceeeecCCeEEEEec--CCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHH
Confidence 4566654 553 468899999994 45566554 3555556554322000 00
Q ss_pred c-ccccCCcccccChHHHHHHHHhC---CC-CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHH
Q 008664 296 L-SKSVGGTRVEVNHDAIEFLCSNC---DG-DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDA 370 (558)
Q Consensus 296 ~-~~~~~~~~~~i~~~al~~La~~s---~G-d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v 370 (558)
. ....-...+.++++++++|+..+ +- .+|..+.+++.+...+..+ | ...|+.+||
T Consensus 238 i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~-------------g-------r~~V~~~Dv 297 (633)
T TIGR02442 238 IARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALD-------------G-------RRRVTAEDV 297 (633)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc-------------C-------CCcCCHHHH
Confidence 0 00000145788999999998873 22 4888898888887777653 4 568999999
Q ss_pred HHHHh
Q 008664 371 KEAFQ 375 (558)
Q Consensus 371 ~~~l~ 375 (558)
++++.
T Consensus 298 ~~A~~ 302 (633)
T TIGR02442 298 REAAE 302 (633)
T ss_pred HHHHH
Confidence 88665
No 188
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.50 E-value=7.8e-13 Score=128.00 Aligned_cols=128 Identities=23% Similarity=0.369 Sum_probs=105.6
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhcC-cEEEEeccCC----------CCCCCCcHHhhcccceeeccCCCHHHHHHHH
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDG-SIVFIGATTE----------NPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~~-~iilI~att~----------n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL 285 (558)
-++||||||+|.|+-+.+..|...+|+. .-++|.+|+. ...+-++-.|+.|..+|.-.|++.+++..||
T Consensus 288 vpGVLFIDEvHMLDIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred ccceEEEeeehhhhhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 4789999999999999999999999883 3334444422 2235688899999999999999999999999
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccc
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (558)
+..|.+ +.+.+++++++.|... ..-.+|.+++++..+...+..+ . ...
T Consensus 368 ~iRc~E-----------Edv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr-------------k-------~~~ 416 (454)
T KOG2680|consen 368 RIRCQE-----------EDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR-------------K-------GKV 416 (454)
T ss_pred Hhhhhh-----------hccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-------------c-------Cce
Confidence 999988 8999999999999998 5678999999998887776542 1 357
Q ss_pred cCHHHHHHHHh
Q 008664 365 VTLDDAKEAFQ 375 (558)
Q Consensus 365 It~e~v~~~l~ 375 (558)
+..+|++++..
T Consensus 417 v~~~di~r~y~ 427 (454)
T KOG2680|consen 417 VEVDDIERVYR 427 (454)
T ss_pred eehhHHHHHHH
Confidence 89999988865
No 189
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=1.1e-12 Score=132.22 Aligned_cols=164 Identities=12% Similarity=0.176 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCC-----------ceEEEEe--cccccHHHHHHHHHHHHHhh
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVS-----------YKFVCLS--AVTSGVKDVRDAVEDARKLR 212 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~-----------~~~i~l~--~~~~~~~~i~~~~~~~~~~~ 212 (558)
+.+.+.++.++. +.+||+|+.|+||+++++.+++.+.|. ..++.++ ....+.++++++.+......
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~ 85 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSS 85 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCC
Confidence 778889988877 667899999999999999999998431 1334444 44456788888877765433
Q ss_pred hhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHH
Q 008664 213 VKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVD 290 (558)
Q Consensus 213 ~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~ 290 (558)
...+.+.|++||+++.++...++.||++||+ ...++|+.|+ ++ .++.++++|||+++.|.|++.+++..+|..
T Consensus 86 ~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~-~~-~kll~TI~SRc~~~~f~~l~~~~l~~~l~~--- 160 (299)
T PRK07132 86 FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK-NI-NKVLPTIVSRCQVFNVKEPDQQKILAKLLS--- 160 (299)
T ss_pred cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeC-Ch-HhChHHHHhCeEEEECCCCCHHHHHHHHHH---
Confidence 2235889999999999999999999999999 5566666554 44 588999999999999999999999888764
Q ss_pred hHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 291 DVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
. .++++....++..++ ++..++..+
T Consensus 161 ------------~--~~~~~~a~~~a~~~~-~~~~a~~~~ 185 (299)
T PRK07132 161 ------------K--NKEKEYNWFYAYIFS-NFEQAEKYI 185 (299)
T ss_pred ------------c--CCChhHHHHHHHHcC-CHHHHHHHH
Confidence 1 256666667777776 488887764
No 190
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=9.9e-14 Score=133.70 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=143.6
Q ss_pred hhhcCCCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 125 SERMRPVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 125 ~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++..-.++.|+-|-+..+ ..++..++.. .+..++|||+||||||.||+++|++.. ..|+.+
T Consensus 176 ~eKaP~Ety~diGGle~Qi---QEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlRv 250 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQI---QEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLRV 250 (440)
T ss_pred cccCchhhhcccccHHHHH---HHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhhh
Confidence 3455556888998888877 7777777653 237899999999999999999999988 788877
Q ss_pred eccc-------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcE
Q 008664 192 SAVT-------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSI 246 (558)
Q Consensus 192 ~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~i 246 (558)
..+. .|..-+|++|.-+... .++|+||||||.+. .+.|..+|.+++. +.+
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~-----apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDv 325 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhc-----CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCe
Confidence 6643 3667788888887654 78999999999773 2456666666643 678
Q ss_pred EEEeccCCCCCCCCcHHhhccc---ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHH----Hh
Q 008664 247 VFIGATTENPSFHLITPLLSRC---RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLC----SN 318 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~sR~---~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La----~~ 318 (558)
-+|.+| |.-..++|+|++.. +.|.|+-++....+.|+.-.-.+ ..+..+ .++.+. ..
T Consensus 326 KvimAT--nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~-------------Mtl~~dVnle~li~~kddl 390 (440)
T KOG0726|consen 326 KVIMAT--NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR-------------MTLAEDVNLEELIMTKDDL 390 (440)
T ss_pred EEEEec--ccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc-------------cchhccccHHHHhhccccc
Confidence 899999 77778999999854 57899988887777766543322 122211 122222 23
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 319 CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 319 s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
|+.|+.....-.-.++.... ...+|.+|++.+..+
T Consensus 391 SGAdIkAictEaGllAlRer-----------------------Rm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 391 SGADIKAICTEAGLLALRER-----------------------RMKVTMEDFKKAKEK 425 (440)
T ss_pred ccccHHHHHHHHhHHHHHHH-----------------------HhhccHHHHHHHHHH
Confidence 66676665544444433332 346999999988765
No 191
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.2e-13 Score=143.08 Aligned_cols=194 Identities=21% Similarity=0.361 Sum_probs=139.8
Q ss_pred CccccccccCCchHHHHHHHHcCCC------CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHH----
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNRL------PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVR---- 202 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~~------~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~---- 202 (558)
+|-.|-+++. +++...+.-+++ +.++|+||||+|||++++.||+.++ ..|+.++-... .+.+|+
T Consensus 411 eDHYgm~dVK---eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVK---ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHH---HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceEEEeccccccHHhhcccce
Confidence 4566777776 778777766543 6799999999999999999999999 88888774322 233332
Q ss_pred --------HHHHHHHHhhhhcCCceEEEEeCCccCCH----HHHHHHHhhHhc-----------------CcEEEEeccC
Q 008664 203 --------DAVEDARKLRVKSNKRTVLFVDEVHRFNK----SQQDSFLPVIED-----------------GSIVFIGATT 253 (558)
Q Consensus 203 --------~~~~~~~~~~~~~~~~~il~IDEid~l~~----~~~~~Ll~~le~-----------------~~iilI~att 253 (558)
.++.-.++ -...+.+++|||||.+.. +-..+||.+|+- .++.||++.
T Consensus 486 TYVGAMPGkiIq~LK~---v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTA- 561 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKK---VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTA- 561 (906)
T ss_pred eeeccCChHHHHHHHh---hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEec-
Confidence 12222222 223567999999999864 345678877753 346666644
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-C-CCCHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-C-DGDARVALNALE 331 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s-~Gd~R~~~~~Le 331 (558)
|....++++|+.|..+|.+.-+..++-..|.++++-.....-. ....+.+.++++++..|.++ | ...+|.+...++
T Consensus 562 -N~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~-gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ie 639 (906)
T KOG2004|consen 562 -NVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDC-GLKPEQVKISDDALLALIERYCREAGVRNLQKQIE 639 (906)
T ss_pred -cccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHc-CCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888999999999999999999999999999988754222110 01346789999999888876 3 346888888888
Q ss_pred HHHHHhc
Q 008664 332 ISAITAA 338 (558)
Q Consensus 332 ~a~~~a~ 338 (558)
.++....
T Consensus 640 kI~Rk~A 646 (906)
T KOG2004|consen 640 KICRKVA 646 (906)
T ss_pred HHHHHHH
Confidence 8776543
No 192
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.9e-12 Score=130.09 Aligned_cols=190 Identities=19% Similarity=0.292 Sum_probs=127.6
Q ss_pred CCccccccccCCchHHHHHHHH---c-----CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc------cH
Q 008664 133 INDVVGQDHLLSPNSLLRSAVC---S-----NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS------GV 198 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~---~-----~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~------~~ 198 (558)
|++||-+...- +.+..+.. + ...++++||||||||||..|+.||+..+ .++-.+...+. ++
T Consensus 354 l~~ViL~psLe---~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG--lDYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 354 LEGVILHPSLE---KRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG--LDYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCeecCHHHH---HHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC--CceehhcCCCccccchHHH
Confidence 77777766554 44444332 2 1248999999999999999999999999 66555554433 45
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCccC---------CHHHHHHHHhhH----hc-CcEEEEeccCCCCCCCCcHHh
Q 008664 199 KDVRDAVEDARKLRVKSNKRTVLFVDEVHRF---------NKSQQDSFLPVI----ED-GSIVFIGATTENPSFHLITPL 264 (558)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~~il~IDEid~l---------~~~~~~~Ll~~l----e~-~~iilI~att~n~~~~l~~aL 264 (558)
..+.++|+=+.+. .++-+|||||+|.| +.++...|..++ +. ..++++.+| |....++.++
T Consensus 429 TkiH~lFDWakkS----~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAt--NrpgdlDsAV 502 (630)
T KOG0742|consen 429 TKIHKLFDWAKKS----RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLAT--NRPGDLDSAV 502 (630)
T ss_pred HHHHHHHHHHhhc----ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEecc--CCccchhHHH
Confidence 6677777766544 37789999999965 334444444444 22 568888888 6667899999
Q ss_pred hccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccC-----------CcccccC----hHHHHHHHHhCCC-CHHHHH
Q 008664 265 LSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVG-----------GTRVEVN----HDAIEFLCSNCDG-DARVAL 327 (558)
Q Consensus 265 ~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~-----------~~~~~i~----~~al~~La~~s~G-d~R~~~ 327 (558)
-.|+ .+++|+-|..++...+|..++.+|-..-...-+ .+.+.+. ...+...+..+.| +-|.+-
T Consensus 503 ~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia 582 (630)
T KOG0742|consen 503 NDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA 582 (630)
T ss_pred HhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHH
Confidence 9999 699999999999999999999886422111000 1334443 3455566666655 556555
Q ss_pred HHHHHH
Q 008664 328 NALEIS 333 (558)
Q Consensus 328 ~~Le~a 333 (558)
.++--+
T Consensus 583 kLva~v 588 (630)
T KOG0742|consen 583 KLVASV 588 (630)
T ss_pred HHHHHH
Confidence 554433
No 193
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.3e-12 Score=130.66 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=122.4
Q ss_pred cccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC----------------------CceEEEEecc
Q 008664 138 GQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV----------------------SYKFVCLSAV 194 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~----------------------~~~~i~l~~~ 194 (558)
.|..++ ..+.+++..++. +.+||+|| +||+++|+.+|+.+.| +.+++.+...
T Consensus 6 ~q~~~~---~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~ 80 (290)
T PRK07276 6 KQPKVF---QRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ 80 (290)
T ss_pred HHHHHH---HHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC
Confidence 344555 889999999987 67899996 6899999999998752 2334444332
Q ss_pred --cccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccce
Q 008664 195 --TSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRV 270 (558)
Q Consensus 195 --~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~ 270 (558)
..+++++|++.......+ ..+.+.|+|||++|+|+...+|.||+.+|+ ...++|..|. + ...+.++++|||+.
T Consensus 81 ~~~I~idqIR~l~~~~~~~p-~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~-~-~~~lLpTI~SRcq~ 157 (290)
T PRK07276 81 GQVIKTDTIRELVKNFSQSG-YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTN-D-ENKVLPTIKSRTQI 157 (290)
T ss_pred CCcCCHHHHHHHHHHHhhCc-ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEEC-C-hhhCchHHHHccee
Confidence 236889999888886653 556789999999999999999999999999 4466666552 3 34899999999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 271 LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 271 i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
+.|++ +.+++.+++.. .+ ++.+....++..+ |++..++.++
T Consensus 158 i~f~~-~~~~~~~~L~~---------------~g--~~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 158 FHFPK-NEAYLIQLLEQ---------------KG--LLKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred eeCCC-cHHHHHHHHHH---------------cC--CChHHHHHHHHHC-CCHHHHHHHh
Confidence 99977 67776666642 23 3344445555554 5787777765
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=8.1e-13 Score=135.27 Aligned_cols=129 Identities=19% Similarity=0.362 Sum_probs=104.2
Q ss_pred CCC-CeEEEEcCCCchHHHHHHHHHHHhCC-----------------------CceEEEEecc-----------cccHHH
Q 008664 156 NRL-PSIIFWGPPGTGKTTLAKAIVNSVAV-----------------------SYKFVCLSAV-----------TSGVKD 200 (558)
Q Consensus 156 ~~~-~~~LL~GppGtGKTtLa~~la~~l~~-----------------------~~~~i~l~~~-----------~~~~~~ 200 (558)
++. +++||+||+|+|||++|+.+|+.+.| +.+++.++.. ..++++
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 344 66999999999999999999999753 2456666652 247889
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC--cEEEEeccCCCCCCCCcHHhhcccceeeccCCCH
Q 008664 201 VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG--SIVFIGATTENPSFHLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~--~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~ 278 (558)
+|++.+.+...+ ..+...|++||+++.|+...++.|++.||+. ..++|++|. ++. .+.+.+.|||+.+.|.+++.
T Consensus 98 iR~l~~~~~~~p-~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth-~~~-~ll~ti~SRc~~~~~~~~~~ 174 (325)
T PRK08699 98 VREIIDNVYLTS-VRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSH-AAD-KVLPTIKSRCRKMVLPAPSH 174 (325)
T ss_pred HHHHHHHHhhCc-ccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeC-ChH-hChHHHHHHhhhhcCCCCCH
Confidence 999888776543 4567899999999999999999999999983 455666553 443 78899999999999999999
Q ss_pred HHHHHHHHH
Q 008664 279 HDVEILLKR 287 (558)
Q Consensus 279 ~~i~~iL~~ 287 (558)
+++..+|..
T Consensus 175 ~~~~~~L~~ 183 (325)
T PRK08699 175 EEALAYLRE 183 (325)
T ss_pred HHHHHHHHh
Confidence 999998864
No 195
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=1e-11 Score=121.22 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=114.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCC--------------------CceEEEEecc--cccHHHHHHHHHHHHHhhhh
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAV--------------------SYKFVCLSAV--TSGVKDVRDAVEDARKLRVK 214 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~--------------------~~~~i~l~~~--~~~~~~i~~~~~~~~~~~~~ 214 (558)
..+.+||+||+|+||..+|..+|+.+.| +.++..+... ..++++++++.+........
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 3578999999999999999999998852 1223333222 34788899888876543212
Q ss_pred cCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCC----------CHHHHH
Q 008664 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPL----------KPHDVE 282 (558)
Q Consensus 215 ~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l----------~~~~i~ 282 (558)
.+.+.|++|+++|+|+....+.||+++|+ ...++|..|. + ...+.+.++|||+.+.|+++ ++.++.
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~-~-~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~ 163 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTR-N-ENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQ 163 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEEC-C-hHhCchHhhhheeeeecCChhhhcccccccChHHHH
Confidence 35689999999999999999999999999 5566666663 3 34899999999999999888 344444
Q ss_pred HHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 283 ~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+.+... ..+++ .++..++|+...++.+++.+
T Consensus 164 ~~L~~~----------------~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 164 YILLSF----------------YSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHHHc----------------cCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 433321 12343 67777999999999999953
No 196
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.8e-12 Score=143.94 Aligned_cols=225 Identities=22% Similarity=0.305 Sum_probs=155.6
Q ss_pred CCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCce---EEEEec
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYK---FVCLSA 193 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~---~i~l~~ 193 (558)
-..|+++-|-++.+ ..|+.++... .++.+||+||||||||..|+++|..+..... |+.-..
T Consensus 261 ~v~fd~vggl~~~i---~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYI---NQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred ccCccccccHHHHH---HHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 35789999999988 8888877652 2477999999999999999999999862222 221111
Q ss_pred -------ccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEec
Q 008664 194 -------VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 194 -------~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~a 251 (558)
+.....+++.+|+++++. .+.|||+||||.+.+ .....||.+|+. |.+++|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~-----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKT-----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhcc-----CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 122456788899998765 789999999997754 234567777765 88999999
Q ss_pred cCCCCCCCCcHHhhcc--c-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHH
Q 008664 252 TTENPSFHLITPLLSR--C-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328 (558)
Q Consensus 252 tt~n~~~~l~~aL~sR--~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~ 328 (558)
| |....++++|+++ | +.+.|+-++.++...|+...-.+ ....+....+..|++.+.|-...-+.
T Consensus 413 T--nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk-----------w~~~i~~~l~~~la~~t~gy~gaDlk 479 (1080)
T KOG0732|consen 413 T--NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK-----------WEPPISRELLLWLAEETSGYGGADLK 479 (1080)
T ss_pred c--CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC-----------CCCCCCHHHHHHHHHhccccchHHHH
Confidence 9 7778999999885 4 57889888889999988876544 56778899999999998887776655
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
.|-..+.....+. ..-.+..+.+.-....+...|...++-.++.+..
T Consensus 480 aLCTeAal~~~~r---~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ 526 (1080)
T KOG0732|consen 480 ALCTEAALIALRR---SFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRIT 526 (1080)
T ss_pred HHHHHHhhhhhcc---ccCeeecccccccccchhhhhhhHhhhhhhhccC
Confidence 5543333322111 1111111112111122234477777777776643
No 197
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.37 E-value=4.4e-10 Score=116.73 Aligned_cols=237 Identities=14% Similarity=0.197 Sum_probs=169.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC----CCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEE
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA----VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLF 222 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~----~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~ 222 (558)
..+...+..+-.+.++|+|+-=.=+...++.+.+... .+..++.+++.... +..++..+...+ .++.+.+|+
T Consensus 6 ~~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~---~~~l~~~~~t~~-lF~~~klvi 81 (340)
T PRK05574 6 EQLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD---WDDVLEACQSLP-LFSDRKLVE 81 (340)
T ss_pred HHHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC---HHHHHHHhhccC-ccccCeEEE
Confidence 4555566655457899999875445455555555432 22444555554444 455555554443 567889999
Q ss_pred EeCCccCCHHH----HHHHHhhHh---cCcEEEEeccCC-CCCCCC---cHHhhcccceeeccCCCHHHHHHHHHHHHHh
Q 008664 223 VDEVHRFNKSQ----QDSFLPVIE---DGSIVFIGATTE-NPSFHL---ITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 223 IDEid~l~~~~----~~~Ll~~le---~~~iilI~att~-n~~~~l---~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
|++++.+.... ...|..+++ ...++++..+.. +....+ .+.+.+++.++.+.+++..++..++...+.+
T Consensus 82 i~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 161 (340)
T PRK05574 82 LRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQRLKQ 161 (340)
T ss_pred EECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999986642 233444441 123455544322 222233 4567778899999999999999999999988
Q ss_pred HhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHH
Q 008664 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAK 371 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~ 371 (558)
.++.++++++++|++..+||++.+.+.++.++.++.. .. ||.++|+
T Consensus 162 -----------~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~----------------------~~-It~~~I~ 207 (340)
T PRK05574 162 -----------QGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPD----------------------GK-ITLEDVE 207 (340)
T ss_pred -----------cCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCC----------------------CC-CCHHHHH
Confidence 8999999999999999999999999999999988643 23 9999999
Q ss_pred HHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhc
Q 008664 372 EAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRF 431 (558)
Q Consensus 372 ~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~ 431 (558)
+++.... ....++++.++.+ +|...++..+.+|+..|++|..|.+.+...
T Consensus 208 ~~i~~~~------~~~~f~l~dai~~----~~~~~a~~~l~~l~~~~~~~~~il~~l~~~ 257 (340)
T PRK05574 208 EAVPDSA------RFDVFDLVDAILA----GKIKRALRILDGLRLEGEEPIKLLAALQRE 257 (340)
T ss_pred HHHhhhh------cCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9987532 3567888888877 899999999999999999998777655543
No 198
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.37 E-value=1.5e-10 Score=118.13 Aligned_cols=259 Identities=17% Similarity=0.165 Sum_probs=178.6
Q ss_pred CceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-HHHHHHHHhhHhc--CcEEEEeccCCCC-CCCC
Q 008664 185 SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-KSQQDSFLPVIED--GSIVFIGATTENP-SFHL 260 (558)
Q Consensus 185 ~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-~~~~~~Ll~~le~--~~iilI~att~n~-~~~l 260 (558)
+..++.+.+.+....+ +++.+.... ..+.+.+++|++++.+. +...+.|+.++++ ...++|+.++... ...+
T Consensus 18 ~~~~~~~~~~e~~~~~---l~~~~~~~s-lf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~ 93 (302)
T TIGR01128 18 EFNVFRIDGEEFDWNQ---LLEEAQTLP-LFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKL 93 (302)
T ss_pred hheeeeeccCCCCHHH---HHHHhhccC-cccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHH
Confidence 3566667666555555 444444433 56788999999999986 4567889999887 4444554443211 1122
Q ss_pred cHHhh--cccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 008664 261 ITPLL--SRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAA 338 (558)
Q Consensus 261 ~~aL~--sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~ 338 (558)
.+.+. ++|.++.|.+++..++..++...+.+ .++.++++++++|+..++||++.+.+.|+.++.+..
T Consensus 94 ~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-----------~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~ 162 (302)
T TIGR01128 94 TKWLKALKNAQIVECKTPKEQELPRWIQARLKK-----------LGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAP 162 (302)
T ss_pred HHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCC
Confidence 22333 48999999999999999999999988 899999999999999999999999999999998864
Q ss_pred ccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 008664 339 VRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGG 418 (558)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~g 418 (558)
. ..||.++|+.++.... ....++++.++.+ +|...++..+.+|+..|
T Consensus 163 ~-----------------------~~It~e~I~~~~~~~~------~~~if~l~dal~~----~~~~~a~~~l~~l~~~~ 209 (302)
T TIGR01128 163 D-----------------------GKITLEDVEEAVSDSA------RFNVFDLTDALLE----GKAARALRILKGLLGEG 209 (302)
T ss_pred C-----------------------CCCCHHHHHHHHhhhh------cCCHHHHHHHHHC----CCHHHHHHHHHHHHHCC
Confidence 3 2599999999987532 2345666666666 99999999999999999
Q ss_pred CChHHHHHHHhhccccccccCChHhHHH-HHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 008664 419 EQPLYIARRLVRFASEDVGLADPLALNQ-AVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIR 494 (558)
Q Consensus 419 edp~~I~rrl~~~a~edigla~~~a~~~-~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~ 494 (558)
++|..|.+.|......-..+. .+.. ..+-.++++.+|++.-++......+..-..++-...+..+..+-..+|
T Consensus 210 ~~~~~il~~l~~~~~~L~~~k---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K 283 (302)
T TIGR01128 210 EEPLILLALLQRQLRLLLQLK---RLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLK 283 (302)
T ss_pred CcHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 999877766664432111000 0000 002234566788887777765555444444444455555555555555
No 199
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.7e-12 Score=123.31 Aligned_cols=174 Identities=24% Similarity=0.417 Sum_probs=118.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccH-----HHHHHHHHHHH---HhhhhcCCceEEEEeCCccCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-----KDVRDAVEDAR---KLRVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~-----~~i~~~~~~~~---~~~~~~~~~~il~IDEid~l~ 230 (558)
.++||.||+|+|||.||+.+|+.++ .+|-..+++..++ +++..++.... ........++||+|||||.+.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 7899999999999999999999999 8888877765421 34444433332 222234478999999999885
Q ss_pred H--------------HHHHHHHhhHhc---------C--------------cEEEEecc---------------------
Q 008664 231 K--------------SQQDSFLPVIED---------G--------------SIVFIGAT--------------------- 252 (558)
Q Consensus 231 ~--------------~~~~~Ll~~le~---------~--------------~iilI~at--------------------- 252 (558)
+ ..|.+||+++|. | .+.||+..
T Consensus 176 rkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~ 255 (408)
T COG1219 176 RKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFG 255 (408)
T ss_pred ccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccc
Confidence 4 378999999985 1 12333221
Q ss_pred CCCC---------------------CCCCcHHhhcccc-eeeccCCCHHHHHHHHHH----HHHhHhcccccccCCcccc
Q 008664 253 TENP---------------------SFHLITPLLSRCR-VLTLNPLKPHDVEILLKR----AVDDVNNGLSKSVGGTRVE 306 (558)
Q Consensus 253 t~n~---------------------~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~----~l~~~~~~~~~~~~~~~~~ 306 (558)
.+.. .|-+.|.|.-|+- +..+.+++.+++..||.. ..++|...+ + ..+-.+.
T Consensus 256 a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf-~-~d~V~L~ 333 (408)
T COG1219 256 AEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLF-E-MDGVELE 333 (408)
T ss_pred ccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHh-c-ccCceEE
Confidence 1100 1346678888885 567999999999999864 233333322 1 1235667
Q ss_pred cChHHHHHHHHh---CCCCHHHHHHHHHHHHHH
Q 008664 307 VNHDAIEFLCSN---CDGDARVALNALEISAIT 336 (558)
Q Consensus 307 i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~ 336 (558)
++++|+..||+. -.-.+|-+..++|.++.-
T Consensus 334 F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld 366 (408)
T COG1219 334 FTEEALKAIAKKAIERKTGARGLRSIIEELLLD 366 (408)
T ss_pred EcHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 899999999987 345678888888776643
No 200
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.4e-11 Score=131.12 Aligned_cols=158 Identities=18% Similarity=0.298 Sum_probs=122.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT-------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~ 230 (558)
++.+|+|||||||||.+++++|++.+ ..++.+++.. .+.+.+|..|+++.+.. .+.+|||||+|.+.
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~~--a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~----~psii~IdEld~l~ 291 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEYG--AFLFLINGPELISKFPGETESNLRKAFAEALKFQ----VPSIIFIDELDALC 291 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHhC--ceeEecccHHHHHhcccchHHHHHHHHHHHhccC----CCeeEeHHhHhhhC
Confidence 37899999999999999999999999 8888888753 35677899999987652 38999999999986
Q ss_pred H----------HHHHHHHhhHhc----CcEEEEeccCCCCCCCCcHHhhc-cc-ceeeccCCCHHHHHHHHHHHHHhHhc
Q 008664 231 K----------SQQDSFLPVIED----GSIVFIGATTENPSFHLITPLLS-RC-RVLTLNPLKPHDVEILLKRAVDDVNN 294 (558)
Q Consensus 231 ~----------~~~~~Ll~~le~----~~iilI~att~n~~~~l~~aL~s-R~-~~i~~~~l~~~~i~~iL~~~l~~~~~ 294 (558)
+ .....|+.+++. +++++|++| |....+++++++ || +.+.+.-|+..+..+|++...+.
T Consensus 292 p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~at--nrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~--- 366 (693)
T KOG0730|consen 292 PKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAAT--NRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKK--- 366 (693)
T ss_pred CcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEec--CCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHh---
Confidence 4 234567777765 567777776 556699999997 77 57889999999999999988866
Q ss_pred ccccccCCcccccChHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 008664 295 GLSKSVGGTRVEVNHDAIEFLCSNCDGDARV-ALNALEISAI 335 (558)
Q Consensus 295 ~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~-~~~~Le~a~~ 335 (558)
.+.. ++..+..++..+.|-+.. +-.++..+..
T Consensus 367 --------~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~ 399 (693)
T KOG0730|consen 367 --------MNLL-SDVDLEDIAVSTHGYVGADLAALCREASL 399 (693)
T ss_pred --------cCCc-chhhHHHHHHHccchhHHHHHHHHHHHHH
Confidence 3333 677889999998886643 4444444433
No 201
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.35 E-value=1.4e-11 Score=131.42 Aligned_cols=173 Identities=25% Similarity=0.316 Sum_probs=132.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHH------------HhhhhcCCceEEEEeCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDAR------------KLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~il~IDEi 226 (558)
-++++.|+|||||..++++|.+......+|+.+||......-+...+-... ........++.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 579999999999999999999998877899999998776555443322211 01112346789999999
Q ss_pred ccCCHHHHHHHHhhHhcCc------------EEEEeccCCCCC-----CCCcHHhhcccc--eeeccCCCH-HHHHHHHH
Q 008664 227 HRFNKSQQDSFLPVIEDGS------------IVFIGATTENPS-----FHLITPLLSRCR--VLTLNPLKP-HDVEILLK 286 (558)
Q Consensus 227 d~l~~~~~~~Ll~~le~~~------------iilI~att~n~~-----~~l~~aL~sR~~--~i~~~~l~~-~~i~~iL~ 286 (558)
..|.-..|..||++++++. |.+|.+|+.+.. ..+...|.-|.. +|.++|+.+ .+....|.
T Consensus 417 gd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~ 496 (606)
T COG3284 417 GDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLD 496 (606)
T ss_pred hhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHH
Confidence 9999999999999999865 457777765432 345567777774 788899887 45555666
Q ss_pred HHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHhcc
Q 008664 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITAAV 339 (558)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
+++.+. +...+.++++++..|..+ |+||+|++.|+++.++..+..
T Consensus 497 ~~~~~~--------~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~ 542 (606)
T COG3284 497 RILKRE--------NDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDG 542 (606)
T ss_pred HHHHHc--------cCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCC
Confidence 666552 225788999999998887 999999999999999998764
No 202
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=4.3e-11 Score=120.86 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHH-H-HHH-H--HH------HHHHh--hh
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVK-D-VRD-A--VE------DARKL--RV 213 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~-~-i~~-~--~~------~~~~~--~~ 213 (558)
..+..++..+ ++++|.||||||||++++.+|+.++ .+++.+++...... + +.. . ++ ..... ..
T Consensus 55 ~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~--~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~ 130 (327)
T TIGR01650 55 KAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLN--WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPW 130 (327)
T ss_pred HHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHC--CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchh
Confidence 4455555443 5799999999999999999999999 77777766433110 0 000 0 00 00000 00
Q ss_pred hcCCceEEEEeCCccCCHHHHHHHHhhHhc-Cc---------------EEEEeccCCCCC------------CCCcHHhh
Q 008664 214 KSNKRTVLFVDEVHRFNKSQQDSFLPVIED-GS---------------IVFIGATTENPS------------FHLITPLL 265 (558)
Q Consensus 214 ~~~~~~il~IDEid~l~~~~~~~Ll~~le~-~~---------------iilI~att~n~~------------~~l~~aL~ 265 (558)
....+.+|++||+++..++.+..|..++|. +. +.+|++. |+. ..++.+++
T Consensus 131 A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~--Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 131 ALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATA--NTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred HHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEee--CCCCcCCCCcceeeeecCCHHHH
Confidence 113567899999999999999999999984 22 3455544 542 35789999
Q ss_pred cccc-eeeccCCCHHHHHHHHHHHH
Q 008664 266 SRCR-VLTLNPLKPHDVEILLKRAV 289 (558)
Q Consensus 266 sR~~-~i~~~~l~~~~i~~iL~~~l 289 (558)
+||. ++.+..++.++-.+|+....
T Consensus 209 DRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 209 DRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred hheeeEeeCCCCCHHHHHHHHHhhc
Confidence 9997 56899999999888887653
No 203
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-12 Score=124.23 Aligned_cols=170 Identities=24% Similarity=0.350 Sum_probs=115.4
Q ss_pred CCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
-+|+.+-|....+ ..++..+.-. .+..++||||||+|||.+|++++..++ ..|+.+.++..
T Consensus 129 ~s~~~~ggl~~qi---relre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg--~nfl~v~ss~lv 203 (388)
T KOG0651|consen 129 ISFENVGGLFYQI---RELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG--VNFLKVVSSALV 203 (388)
T ss_pred cCHHHhCChHHHH---HHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC--CceEEeeHhhhh
Confidence 3778887777666 6666665532 135799999999999999999999999 88888876543
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcEEEEecc
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSIVFIGAT 252 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~iilI~at 252 (558)
...-||+.+..++.. .++|||+||||... ...|..|..++++ +++.+|.+|
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~-----~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Imat 278 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREV-----IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMAT 278 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhh-----CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEec
Confidence 344577888877665 56999999999652 2345556555543 678899988
Q ss_pred CCCCCCCCcHHhhc--ccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC
Q 008664 253 TENPSFHLITPLLS--RCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG 321 (558)
Q Consensus 253 t~n~~~~l~~aL~s--R~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G 321 (558)
|.+..++++|++ |.. .+..+-+.......+++-.... + ...-.++.+++..+....+|
T Consensus 279 --NrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~----i-----~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 279 --NRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP----I-----DFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred --CCccccchhhcCCccccceeccCCcchhhceeeEeecccc----c-----cccccccHHHHHHHHhccCh
Confidence 777799999998 443 4555544443333333322111 0 01224567777777766655
No 204
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.34 E-value=2.8e-11 Score=133.65 Aligned_cols=200 Identities=21% Similarity=0.246 Sum_probs=131.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-----cHHHHHHHHHHH----HHhhhhcCCceEEEEeC
Q 008664 155 SNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-----GVKDVRDAVEDA----RKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 155 ~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-----~~~~i~~~~~~~----~~~~~~~~~~~il~IDE 225 (558)
...+.++||.|+||||||++|+.+++.+....+|+.+..... |.-++...+... .........+++|||||
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDE 92 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDM 92 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccc
Confidence 344789999999999999999999999874446777764211 111111111110 00111224568999999
Q ss_pred CccCCHHHHHHHHhhHhcCc---------------EEEEeccCCCCC---CCCcHHhhcccce-eecc-CCCHHHHHHHH
Q 008664 226 VHRFNKSQQDSFLPVIEDGS---------------IVFIGATTENPS---FHLITPLLSRCRV-LTLN-PLKPHDVEILL 285 (558)
Q Consensus 226 id~l~~~~~~~Ll~~le~~~---------------iilI~att~n~~---~~l~~aL~sR~~~-i~~~-~l~~~~i~~iL 285 (558)
|++++...|+.|+..|+++. +.+|+++ |+. ..+.++|+.||.+ +.+. +.+.++..+++
T Consensus 93 i~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~--np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil 170 (589)
T TIGR02031 93 ANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATY--DPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIV 170 (589)
T ss_pred hhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEec--CCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHH
Confidence 99999999999999998764 4566544 443 3788999999953 3443 34555566666
Q ss_pred HHHHHhHhccc------------ccccCCcccccChHHHHHHHHh---CCC-CHHHHHHHHHHHHHHhcccCCccchhhh
Q 008664 286 KRAVDDVNNGL------------SKSVGGTRVEVNHDAIEFLCSN---CDG-DARVALNALEISAITAAVRVPVKEVKEV 349 (558)
Q Consensus 286 ~~~l~~~~~~~------------~~~~~~~~~~i~~~al~~La~~---s~G-d~R~~~~~Le~a~~~a~~~~~~~~~~~~ 349 (558)
++......... ....-...+.++++++++|++. .+- .+|..+.++..+...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~--------- 241 (589)
T TIGR02031 171 RRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH--------- 241 (589)
T ss_pred HHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh---------
Confidence 66442110000 0000125778999999998887 232 4889999888888777653
Q ss_pred hccccCCCCCCCccccCHHHHHHHHhh
Q 008664 350 EQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
| ...|+.+||+.+..-
T Consensus 242 ----g-------r~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 242 ----G-------RTEVTEEDLKLAVEL 257 (589)
T ss_pred ----C-------CCCCCHHHHHHHHHH
Confidence 4 668999999988763
No 205
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.34 E-value=4.2e-11 Score=132.43 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=94.0
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhcCc-----------------------EEEEeccCCCCCCCCcHHhhcccc---e
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGS-----------------------IVFIGATTENPSFHLITPLLSRCR---V 270 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~~~-----------------------iilI~att~n~~~~l~~aL~sR~~---~ 270 (558)
.+++|||||++.|+...|..|+++|++++ +.+|++++.+....++++|++||. +
T Consensus 217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeE
Confidence 46899999999999999999999997643 456666644334578999999987 2
Q ss_pred -eecc---CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh----------CCCCHHHHHHHHHHHHHH
Q 008664 271 -LTLN---PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN----------CDGDARVALNALEISAIT 336 (558)
Q Consensus 271 -i~~~---~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~----------s~Gd~R~~~~~Le~a~~~ 336 (558)
+.|. |.+.+....+++.+....... | ....++++++..|.++ ...+.|.+.++++.+...
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~-----G-~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~i 370 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKD-----G-RIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDI 370 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHh-----C-CCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHH
Confidence 3333 344555555544443332221 1 2337899999999864 235689999999998665
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+..+ + ...|+.+||+++++.+
T Consensus 371 A~~~-------------~-------~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 371 AKSS-------------G-------KVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhc-------------C-------CceecHHHHHHHHHHH
Confidence 5431 2 4579999999998754
No 206
>PRK05907 hypothetical protein; Provisional
Probab=99.34 E-value=1.8e-10 Score=117.09 Aligned_cols=231 Identities=13% Similarity=0.095 Sum_probs=171.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHH-hCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS-VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~-l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
..+.+.++.+. +.+++||..- ....+.+-+. ++. ....+++. ..++.++++.+...+ .++.+.+|++.+
T Consensus 8 ~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~--~~~~fdg~---~~~~~~ii~~aetlP-fFaerRlV~v~~ 77 (311)
T PRK05907 8 KDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSG--RKSEFDGQ---GLLQQELLSWTEHFG-LFASQETIGIYQ 77 (311)
T ss_pred HHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCC--ccceecCC---CCCHHHHHHHHhcCC-cccCeEEEEEec
Confidence 55666677777 8999999988 4444444444 442 22333333 334677888887776 677888888888
Q ss_pred CccCCHHHHHHHHhhHhc--C-cEEEEeccCCCCCCCCcHHhhccccee----eccCCCHHHHHHHHHHHHHhHhccccc
Q 008664 226 VHRFNKSQQDSFLPVIED--G-SIVFIGATTENPSFHLITPLLSRCRVL----TLNPLKPHDVEILLKRAVDDVNNGLSK 298 (558)
Q Consensus 226 id~l~~~~~~~Ll~~le~--~-~iilI~att~n~~~~l~~aL~sR~~~i----~~~~l~~~~i~~iL~~~l~~~~~~~~~ 298 (558)
.+.+.....+.|..++++ . .+++|++.......++.+.+. ....+ .++++.+.++..|+...+.+
T Consensus 78 ~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~------- 149 (311)
T PRK05907 78 AEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLS-SALCLSLFGEWFADRDKRIAQLLIQRAKE------- 149 (311)
T ss_pred ccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHh-hcceeccccccCCCCHHHHHHHHHHHHHH-------
Confidence 777776677889999987 2 344434331111112233333 24444 89999999999999999988
Q ss_pred ccCCcccccChHHHHHHHHhC-CCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 299 SVGGTRVEVNHDAIEFLCSNC-DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 299 ~~~~~~~~i~~~al~~La~~s-~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.+..++++++++++..+ +||+..+.+.|+.++.+... ...||.++|++++...
T Consensus 150 ----~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~----------------------~~~It~e~V~~lv~~s 203 (311)
T PRK05907 150 ----LGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGK----------------------KESLEASDIQSFVVKK 203 (311)
T ss_pred ----cCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCC----------------------CCeECHHHHHHHhcCc
Confidence 89999999999999999 69999999999999998653 3579999999998865
Q ss_pred cccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCChHHHHHHHhhc
Q 008664 378 HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEG-GEQPLYIARRLVRF 431 (558)
Q Consensus 378 ~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~-gedp~~I~rrl~~~ 431 (558)
. ..+.|+++.|+.+ .+...|+..+..|+.. |++|..|..-|.+.
T Consensus 204 ~------e~nIF~L~dai~~----~~~~~Al~il~~Ll~~~ge~p~~ILall~rQ 248 (311)
T PRK05907 204 E------AASLWKLRDALLR----RDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQ 248 (311)
T ss_pred c------cccHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3 5667888888888 9999999999999999 99998776555543
No 207
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.34 E-value=2.8e-10 Score=118.44 Aligned_cols=234 Identities=18% Similarity=0.203 Sum_probs=166.5
Q ss_pred HHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCC----CceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEE
Q 008664 148 LLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAV----SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVL 221 (558)
Q Consensus 148 ~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~----~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il 221 (558)
.+...+.. +..+.++|||+-.......++.+.+.+.. +..+..+.+.... .++.++++.+...+ .++.+.+|
T Consensus 8 ~~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~-~~~~~~~~~~~t~s-lF~~~rlV 85 (343)
T PRK06585 8 EVDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD-ADPARLEDEANAIS-LFGGRRLI 85 (343)
T ss_pred HHHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh-cCHHHHHHHHhCCC-CCCCceEE
Confidence 34444443 24578999999999988888888877641 1233333321111 12567777776654 67788899
Q ss_pred EEeCCccCCHHHHHHHHhhHhc---CcEEEEeccCCCCCCCCcHHhh--cccceeeccCCCHHHHHHHHHHHHHhHhccc
Q 008664 222 FVDEVHRFNKSQQDSFLPVIED---GSIVFIGATTENPSFHLITPLL--SRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296 (558)
Q Consensus 222 ~IDEid~l~~~~~~~Ll~~le~---~~iilI~att~n~~~~l~~aL~--sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~ 296 (558)
++.+.+ +...+.|..+++. ..++++.+...+...++.+.+. .....+.+.+++..++..++...+.+
T Consensus 86 iv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~----- 157 (343)
T PRK06585 86 WVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAE----- 157 (343)
T ss_pred EEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHH-----
Confidence 999654 3445566666665 3444443221122222223221 23456788899999999999999988
Q ss_pred ccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 297 ~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.++.++++++++|++.++||++.+.+.|+.++.++.. ...||.++|.+++..
T Consensus 158 ------~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~----------------------~~~It~edV~~lv~~ 209 (343)
T PRK06585 158 ------AGLRITPDARALLVALLGGDRLASRNEIEKLALYAHG----------------------KGEITLDDVRAVVGD 209 (343)
T ss_pred ------CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----------------------CCCCCHHHHHHHhCC
Confidence 8999999999999999999999999999999998643 246999999999875
Q ss_pred ccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHh
Q 008664 377 KHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLV 429 (558)
Q Consensus 377 ~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~ 429 (558)
.. ....++++.++.. +|...|+..+.+++..|++|..|...|.
T Consensus 210 ~~------e~~if~l~dai~~----~~~~~a~~~l~~ll~~g~~p~~il~~L~ 252 (343)
T PRK06585 210 AS------ALSLDDAADAALA----GDLAAFERALDRALAEGTAPVLILRAAL 252 (343)
T ss_pred cc------cccHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 42 3456788877777 9999999999999999999987655444
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.32 E-value=2.2e-11 Score=109.20 Aligned_cols=135 Identities=30% Similarity=0.373 Sum_probs=88.8
Q ss_pred cccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHH-HH----HHHHh
Q 008664 138 GQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDA-VE----DARKL 211 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~-~~----~~~~~ 211 (558)
|++..+ ..+...+......+++|+||||+|||++++.+++.+. ....++.+++........... .. .....
T Consensus 2 ~~~~~~---~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 2 GQEEAI---EALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred chHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 444444 6666666665567899999999999999999999982 126677776654422221111 11 11111
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--------CcEEEEeccCCCCCCCCcHHhhccc-ceeeccC
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--------GSIVFIGATTENPSFHLITPLLSRC-RVLTLNP 275 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--------~~iilI~att~n~~~~l~~aL~sR~-~~i~~~~ 275 (558)
........+|+|||++.+.......++..++. ..+.+|++++......+.+.+.+|| ..+.+++
T Consensus 79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 11334678999999999977777777777755 3567777665443336778899998 5666653
No 209
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.32 E-value=4.5e-12 Score=117.62 Aligned_cols=134 Identities=22% Similarity=0.327 Sum_probs=89.7
Q ss_pred cccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHH-HHHHHH--
Q 008664 136 VVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRD-AVEDAR-- 209 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~-~~~~~~-- 209 (558)
+||.+..+ +.+.+.++. ....++||+|++||||+.+|++|++... ...+|+.++|.....+.+.. +|....
T Consensus 1 liG~s~~m---~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAM---KRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHH---HHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSS
T ss_pred CEeCCHHH---HHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcccccc
Confidence 45666665 555555443 2337899999999999999999999876 45799999999876665543 232110
Q ss_pred --------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC-------------cEEEEeccCCCCC-----CCCcHH
Q 008664 210 --------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG-------------SIVFIGATTENPS-----FHLITP 263 (558)
Q Consensus 210 --------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~-------------~iilI~att~n~~-----~~l~~a 263 (558)
........+++||||||+.|+...|..|+++|+++ .+.+|++|+.+.. ..+.+.
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~d 157 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFRED 157 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HH
T ss_pred ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHH
Confidence 01113347899999999999999999999999864 3678888876642 355667
Q ss_pred hhcccceee
Q 008664 264 LLSRCRVLT 272 (558)
Q Consensus 264 L~sR~~~i~ 272 (558)
|..|..++.
T Consensus 158 Ly~rL~~~~ 166 (168)
T PF00158_consen 158 LYYRLNVFT 166 (168)
T ss_dssp HHHHHTTEE
T ss_pred HHHHhceEe
Confidence 777765554
No 210
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.31 E-value=2.7e-10 Score=117.74 Aligned_cols=225 Identities=15% Similarity=0.235 Sum_probs=164.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC----CceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC---CH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV----SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF---NK 231 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~----~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l---~~ 231 (558)
+.++|||+.---+...++.+.+.+.. +..+..+++.+. +.+..++.++...+ ..+.+.+|++++.+.+ ++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~--~~~~~~~~~~~t~p-ff~~~rlVvv~~~~~~~~~~~ 78 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA--DQAIQALNEAMTPP-FGSGGRLVWLKNSPLCQGCSE 78 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc--hHHHHHHHHhcCCC-CCCCceEEEEeCchhhccCCH
Confidence 56899999998888888888776531 233444443322 23567777765554 6678899999998655 56
Q ss_pred HHHHHHHhhHhc--CcEEEEeccCCC--CCCCCcHHhhcccceeeccCC---CHHHHHHHHHHHHHhHhcccccccCCcc
Q 008664 232 SQQDSFLPVIED--GSIVFIGATTEN--PSFHLITPLLSRCRVLTLNPL---KPHDVEILLKRAVDDVNNGLSKSVGGTR 304 (558)
Q Consensus 232 ~~~~~Ll~~le~--~~iilI~att~n--~~~~l~~aL~sR~~~i~~~~l---~~~~i~~iL~~~l~~~~~~~~~~~~~~~ 304 (558)
...+.|..++++ ...++|+.++.. ...++...+...+.+..|.++ +.+++..+++..+.+ .+
T Consensus 79 ~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~-----------~g 147 (326)
T PRK07452 79 ELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQE-----------LG 147 (326)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHH-----------cC
Confidence 778889999987 334444433221 112344556666667776655 457789999999888 89
Q ss_pred cccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCC
Q 008664 305 VEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRA 384 (558)
Q Consensus 305 ~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~ 384 (558)
+.++++++++|+..+++|++.+.+.|+.++.++.. + ...||.++|++++...
T Consensus 148 ~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~--------------~-------~~~It~~~V~~~v~~~------- 199 (326)
T PRK07452 148 VKLTPEAAELLAEAVGNDSRRLYNELEKLALYAEN--------------S-------TKPISAEEVKALVSNT------- 199 (326)
T ss_pred CCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccC--------------C-------CCccCHHHHHHHhccC-------
Confidence 99999999999999999999999999999988522 1 2469999999988632
Q ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHh
Q 008664 385 GEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLV 429 (558)
Q Consensus 385 ~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~ 429 (558)
....|+++.++.. ++...|+..+.+|+..|++|..|...+.
T Consensus 200 ~~~if~l~dai~~----~~~~~A~~~l~~L~~~g~~p~~il~~l~ 240 (326)
T PRK07452 200 TQNSLQLADALLQ----GNTGKALALLDDLLDANEPALRIVATLT 240 (326)
T ss_pred cCcHHHHHHHHHC----CCHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 2346777776666 9999999999999999999987765554
No 211
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.8e-11 Score=117.79 Aligned_cols=133 Identities=22% Similarity=0.352 Sum_probs=100.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-------CCceEEEEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-------VSYKFVCLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-------~~~~~i~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
+-+||+||||||||+|++++|+.+. .....+++|+... +-+-+..+|.+........+.-..++||
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 5699999999999999999999986 2345678887433 3345666777776665444455678999
Q ss_pred CCccCCH---------------HHHHHHHhhHhc---CcEEEEeccCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHH
Q 008664 225 EVHRFNK---------------SQQDSFLPVIED---GSIVFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILL 285 (558)
Q Consensus 225 Eid~l~~---------------~~~~~Ll~~le~---~~iilI~att~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL 285 (558)
|++.+.. ...++||.-|+. ..-++|.+| .|....++.++..|.. ++.+.||+.+.+..|+
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~T-SNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Il 336 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILAT-SNLTDSIDVAFVDRADIVFYVGPPTAEAIYEIL 336 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEec-cchHHHHHHHhhhHhhheeecCCccHHHHHHHH
Confidence 9998742 256788888876 334455544 4777899999999995 7889999999999999
Q ss_pred HHHHHhH
Q 008664 286 KRAVDDV 292 (558)
Q Consensus 286 ~~~l~~~ 292 (558)
+.-+.++
T Consensus 337 kscieEL 343 (423)
T KOG0744|consen 337 KSCIEEL 343 (423)
T ss_pred HHHHHHH
Confidence 9888764
No 212
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=4.6e-11 Score=128.72 Aligned_cols=220 Identities=22% Similarity=0.295 Sum_probs=132.3
Q ss_pred CCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC--ceEEEEecccccHH---------
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS--YKFVCLSAVTSGVK--------- 199 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~--~~~i~l~~~~~~~~--------- 199 (558)
..|++++||...+ ..+...+..+ .+++|.||||+|||++++.++..+... ..+++.........
T Consensus 189 ~d~~dv~Gq~~~~---~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 189 LDLKDIKGQQHAK---RALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred CCHHHhcCcHHHH---hhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccc
Confidence 3789999998886 6666655544 689999999999999999999865411 11222221110000
Q ss_pred --HH---------HHHHHH---HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc---------------EEEEe
Q 008664 200 --DV---------RDAVED---ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS---------------IVFIG 250 (558)
Q Consensus 200 --~i---------~~~~~~---~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~---------------iilI~ 250 (558)
.+ ..++.. .+........+++|||||++.|++..|+.|++.||++. +.+|+
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIa 343 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVA 343 (499)
T ss_pred cCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEE
Confidence 00 000000 00000122357899999999999999999999998754 56788
Q ss_pred ccCCCC---------------------CCCCcHHhhcccc-eeeccCCCHHHH------------HHHHHHHHHhHhccc
Q 008664 251 ATTENP---------------------SFHLITPLLSRCR-VLTLNPLKPHDV------------EILLKRAVDDVNNGL 296 (558)
Q Consensus 251 att~n~---------------------~~~l~~aL~sR~~-~i~~~~l~~~~i------------~~iL~~~l~~~~~~~ 296 (558)
+++..+ ..++..+|++||. .+.+++++.+++ ++.+...-.....++
T Consensus 344 a~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~ 423 (499)
T TIGR00368 344 AMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRY 423 (499)
T ss_pred ecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 875432 1157889999995 677877765443 333332222221222
Q ss_pred ccccC-Ccc-----------cccChHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCC
Q 008664 297 SKSVG-GTR-----------VEVNHDAIEFLCSN---CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361 (558)
Q Consensus 297 ~~~~~-~~~-----------~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
....+ ..+ ..+++++.+.+.+. .+=..|....+|..+...+..+ +
T Consensus 424 ~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~-------------g------- 483 (499)
T TIGR00368 424 EKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLK-------------E------- 483 (499)
T ss_pred cCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc-------------C-------
Confidence 00000 001 13455554444433 3447788888887777777652 4
Q ss_pred ccccCHHHHHHHHh
Q 008664 362 VALVTLDDAKEAFQ 375 (558)
Q Consensus 362 ~~~It~e~v~~~l~ 375 (558)
...|+.+||.++++
T Consensus 484 ~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 484 EKNISREHLAEAIE 497 (499)
T ss_pred CCCCCHHHHHHHHh
Confidence 56899999999876
No 213
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=6.9e-11 Score=122.14 Aligned_cols=143 Identities=24% Similarity=0.396 Sum_probs=95.4
Q ss_pred cccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHH------HHHHHHHH
Q 008664 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKD------VRDAVEDA 208 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~------i~~~~~~~ 208 (558)
++|+++.+ ..+..++..+ .+++|.||||||||++|+.+|+.++ .+|+.+.+... ...+ +.......
T Consensus 26 ~~g~~~~~---~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~--~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~ 98 (329)
T COG0714 26 VVGDEEVI---ELALLALLAG--GHVLLEGPPGVGKTLLARALARALG--LPFVRIQCTPDLLPSDLLGTYAYAALLLEP 98 (329)
T ss_pred eeccHHHH---HHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhC--CCeEEEecCCCCCHHHhcCchhHhhhhccC
Confidence 77776665 5555555554 6799999999999999999999999 88888888754 2222 22111000
Q ss_pred H-----HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE-------------EEEeccCCC-----CCCCCcHHhh
Q 008664 209 R-----KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI-------------VFIGATTEN-----PSFHLITPLL 265 (558)
Q Consensus 209 ~-----~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i-------------ilI~att~n-----~~~~l~~aL~ 265 (558)
. ..+....-..++++|||++..+..|+.|+..|+++.+ .++++|. | ..+.++++++
T Consensus 99 ~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~-Np~e~~g~~~l~eA~l 177 (329)
T COG0714 99 GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ-NPGEYEGTYPLPEALL 177 (329)
T ss_pred CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc-CccccCCCcCCCHHHH
Confidence 0 0010111114999999999999999999999988332 1333332 4 3457899999
Q ss_pred ccc-ceeeccCCCH-HHHHHHHH
Q 008664 266 SRC-RVLTLNPLKP-HDVEILLK 286 (558)
Q Consensus 266 sR~-~~i~~~~l~~-~~i~~iL~ 286 (558)
+|| ..+.+..+.. ++...++.
T Consensus 178 dRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 178 DRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred hhEEEEEecCCCCchHHHHHHHH
Confidence 999 6777887744 33333333
No 214
>PRK05629 hypothetical protein; Validated
Probab=99.28 E-value=2.9e-10 Score=116.96 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=160.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh----CCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV----AVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQ 234 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l----~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~ 234 (558)
+.+||||+----.......|.+.+ ..+..++.+++.+... .++++ +.. ...++.+.+|++++.+...+...
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~~---~~l~~-~~t-~slF~~~rlV~v~~~~~~~~~~~ 81 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVSQ---GELLD-ALS-PSLFGEDRVIVLTNMEQAGKEPT 81 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCCH---HHHHH-hhC-cCccCCceEEEEeChHhcChhHH
Confidence 678999976544443434344333 2345667777665554 44444 333 34778889999999888777677
Q ss_pred HHHHhhHhc---CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHH
Q 008664 235 DSFLPVIED---GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDA 311 (558)
Q Consensus 235 ~~Ll~~le~---~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~a 311 (558)
+.|+.++++ ..+++|.+.......++.+.+...+.++.+.++...++..++...+.+ .++.+++++
T Consensus 82 ~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~-----------~g~~i~~~A 150 (318)
T PRK05629 82 DLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKN-----------HGVRPTPDV 150 (318)
T ss_pred HHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHH
Confidence 788888876 233333332211112233466667788999999999999999999988 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHH
Q 008664 312 IEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNL 391 (558)
Q Consensus 312 l~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~ 391 (558)
+++|+..+++|+..+.+.+++++.+. . ..||.++|++++.... ....+++
T Consensus 151 ~~~L~~~~g~dl~~l~~EleKL~~~~-~-----------------------~~It~e~V~~~v~~~~------~~~iF~l 200 (318)
T PRK05629 151 VHALLEGVGSDLRELASAISQLVEDT-Q-----------------------GNVTVEKVRAYYVGVA------EVSGFDI 200 (318)
T ss_pred HHHHHHHHCccHHHHHHHHHHHHhcC-C-----------------------CCcCHHHHHHHhCCCc------cchHHHH
Confidence 99999999999999999999987542 1 3699999999987542 3456788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHH
Q 008664 392 ISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRL 428 (558)
Q Consensus 392 isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl 428 (558)
+.++.+ ++...|+..+.+|+..|++|..|..-|
T Consensus 201 ~dAv~~----g~~~~Al~~l~~l~~~g~~pi~il~~l 233 (318)
T PRK05629 201 ADLACA----GQVSKAVASTRRALQLGVSPVALAAAL 233 (318)
T ss_pred HHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 877777 999999999999999999998774333
No 215
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=1.5e-10 Score=111.38 Aligned_cols=189 Identities=19% Similarity=0.324 Sum_probs=127.0
Q ss_pred hcCCCCCCccccccccCCc-hHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHH
Q 008664 127 RMRPVNINDVVGQDHLLSP-NSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDA 204 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~-~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~ 204 (558)
...|..+++++|-+..... .+.....+.....+++||||++|||||++++++..++. ...+++++...+ ...+..+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~--L~~l~~l 97 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED--LGDLPEL 97 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH--hccHHHH
Confidence 3456678899998766511 12233344444558999999999999999999999875 347777776533 3345555
Q ss_pred HHHHHHhhhhcCCceEEEEeCCccCCH-HHHHHHHhhHhcC-----cEEEEeccCCCCCCC---------------CcH-
Q 008664 205 VEDARKLRVKSNKRTVLFVDEVHRFNK-SQQDSFLPVIEDG-----SIVFIGATTENPSFH---------------LIT- 262 (558)
Q Consensus 205 ~~~~~~~~~~~~~~~il~IDEid~l~~-~~~~~Ll~~le~~-----~iilI~att~n~~~~---------------l~~- 262 (558)
++..+.. ..+-|||+||+..=.. ..-..|..+||.+ .-++|.+|+ |..+. +.+
T Consensus 98 ~~~l~~~----~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS-NRRHLv~E~~~d~~~~~~~eih~~ 172 (249)
T PF05673_consen 98 LDLLRDR----PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS-NRRHLVPESFSDREDIQDDEIHPS 172 (249)
T ss_pred HHHHhcC----CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec-chhhccchhhhhccCCCccccCcc
Confidence 5555433 2678999999864333 3456677777762 234555554 33211 111
Q ss_pred -------Hhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC-----hHHHHHHHHhCCCCHHHHHHH
Q 008664 263 -------PLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN-----HDAIEFLCSNCDGDARVALNA 329 (558)
Q Consensus 263 -------aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~-----~~al~~La~~s~Gd~R~~~~~ 329 (558)
+|..|| ..+.|.+++.++-.+|++..+.+ .++.++ .+|+++-....+.+.|.|...
T Consensus 173 d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~-----------~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 173 DTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER-----------YGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred hHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 355688 58999999999999999999987 667776 455566666666788888777
Q ss_pred HHHH
Q 008664 330 LEIS 333 (558)
Q Consensus 330 Le~a 333 (558)
++.+
T Consensus 242 ~~~l 245 (249)
T PF05673_consen 242 IDDL 245 (249)
T ss_pred HHHH
Confidence 6654
No 216
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.27 E-value=2.8e-12 Score=120.92 Aligned_cols=110 Identities=28% Similarity=0.462 Sum_probs=67.4
Q ss_pred CCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC--ceEEEEecccc-------------
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS--YKFVCLSAVTS------------- 196 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~--~~~i~l~~~~~------------- 196 (558)
.|.+|+||+..+ ..+.-+...+ +++||+||||||||++|+.+..-+..- ...+++.....
T Consensus 1 Df~dI~GQe~aK---rAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~ 75 (206)
T PF01078_consen 1 DFSDIVGQEEAK---RALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQ 75 (206)
T ss_dssp -TCCSSSTHHHH---HHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE-
T ss_pred ChhhhcCcHHHH---HHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecC
Confidence 478999999887 7776666654 799999999999999999999877510 00011100000
Q ss_pred -------cHHHHHHHHHHHHHh---hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE
Q 008664 197 -------GVKDVRDAVEDARKL---RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~---~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i 246 (558)
.......++...... ......++|||+||+..|.+...+.|++.++++.+
T Consensus 76 ~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v 135 (206)
T PF01078_consen 76 RPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEV 135 (206)
T ss_dssp --EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBE
T ss_pred CCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeE
Confidence 000111222211110 11234789999999999999999999999998753
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.27 E-value=8.7e-11 Score=129.51 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=92.2
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhcCc-----------------------EEEEeccCCCCCCCCcHHhhcccce---
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGS-----------------------IVFIGATTENPSFHLITPLLSRCRV--- 270 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~~~-----------------------iilI~att~n~~~~l~~aL~sR~~~--- 270 (558)
.+++|||||++.|+...|..|+++|++++ +.+|++++.+....++++|.+||..
T Consensus 226 nGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v 305 (637)
T PRK13765 226 HKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGY 305 (637)
T ss_pred CCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeE
Confidence 56899999999999999999999997643 3577777665556778999999853
Q ss_pred -eeccC---CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC---CC-------CHHHHHHHHHHHHHH
Q 008664 271 -LTLNP---LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC---DG-------DARVALNALEISAIT 336 (558)
Q Consensus 271 -i~~~~---l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s---~G-------d~R~~~~~Le~a~~~ 336 (558)
+.|.. -+.+.+..+++.+....... +....++++++..|.+++ .| ..|.+.+++..+...
T Consensus 306 ~v~f~~~~~d~~e~~~~~~~~iaqe~~~~------G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~ 379 (637)
T PRK13765 306 EVYMRDTMEDTPENRRKLVRFVAQEVKRD------GKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDI 379 (637)
T ss_pred EEEcccccCCCHHHHHHHHHHHHHHhhhc------cCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHH
Confidence 44543 23455666665444332111 023478999999998862 23 278888888888777
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
+..+ + ...|+.+++.++..
T Consensus 380 a~~~-------------~-------~~~i~~~~v~~a~~ 398 (637)
T PRK13765 380 ARSE-------------G-------AELTTAEHVLEAKK 398 (637)
T ss_pred HHhh-------------c-------cceecHHHHHHHHH
Confidence 6542 2 34688888877764
No 218
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.24 E-value=1.2e-10 Score=126.86 Aligned_cols=215 Identities=20% Similarity=0.244 Sum_probs=135.2
Q ss_pred ccccccccCCchHHHHHHHHcCCC------------CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE---ecccccHH
Q 008664 135 DVVGQDHLLSPNSLLRSAVCSNRL------------PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL---SAVTSGVK 199 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~~~~------------~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l---~~~~~~~~ 199 (558)
.++|++.+. ..+.-.+-.+.. .++||+|+||+|||++|+.+++..... .|+.. ++......
T Consensus 204 ~i~G~~~~k---~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIK---KAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-VYTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHH---HHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-eEcCCCCCCcCCcccc
Confidence 467877664 444444433321 279999999999999999999987622 22221 11111000
Q ss_pred HHHHHHHHH---HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE---------------EEEeccCCCCC----
Q 008664 200 DVRDAVEDA---RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI---------------VFIGATTENPS---- 257 (558)
Q Consensus 200 ~i~~~~~~~---~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i---------------ilI~att~n~~---- 257 (558)
.++.-.... .........+++++|||++.++...|..|+..|+++.+ .+|+++ ||.
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~--NP~~g~y 357 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAA--NPIGGRY 357 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEe--CCCCccc
Confidence 111100000 00011223578999999999999999999999987543 456666 442
Q ss_pred ---------CCCcHHhhccc-ce-eeccCCCHHHHHHHHHHHHHhHhcc----c---------------ccccCC-cccc
Q 008664 258 ---------FHLITPLLSRC-RV-LTLNPLKPHDVEILLKRAVDDVNNG----L---------------SKSVGG-TRVE 306 (558)
Q Consensus 258 ---------~~l~~aL~sR~-~~-i~~~~l~~~~i~~iL~~~l~~~~~~----~---------------~~~~~~-~~~~ 306 (558)
..+++++++|| .+ +.+.+++.+.-..++.+++...... . ...+.. ....
T Consensus 358 ~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ 437 (509)
T smart00350 358 DPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPK 437 (509)
T ss_pred CCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCC
Confidence 16889999999 43 4456777777777777765432110 0 000001 2246
Q ss_pred cChHHHHHHHHh-----C-----------CCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHH
Q 008664 307 VNHDAIEFLCSN-----C-----------DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDA 370 (558)
Q Consensus 307 i~~~al~~La~~-----s-----------~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v 370 (558)
+++++.++|.++ . +-.+|+++.+++.+.+.|..+ + ...|+.+|+
T Consensus 438 ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~-------------~-------r~~V~~~Dv 497 (509)
T smart00350 438 LSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMR-------------L-------SDVVEEADV 497 (509)
T ss_pred CCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHc-------------C-------CCccCHHHH
Confidence 899999888764 1 116899999999988888763 3 568999999
Q ss_pred HHHHh
Q 008664 371 KEAFQ 375 (558)
Q Consensus 371 ~~~l~ 375 (558)
++++.
T Consensus 498 ~~ai~ 502 (509)
T smart00350 498 EEAIR 502 (509)
T ss_pred HHHHH
Confidence 99876
No 219
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.23 E-value=2e-10 Score=113.97 Aligned_cols=214 Identities=15% Similarity=0.153 Sum_probs=134.8
Q ss_pred CCccccccccCCchHHHHHHHHcC---CCCeEEEEcCCCchHHHHHHHHHHHhCC-------CceEEEEecccc-cHHHH
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCSN---RLPSIIFWGPPGTGKTTLAKAIVNSVAV-------SYKFVCLSAVTS-GVKDV 201 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~~---~~~~~LL~GppGtGKTtLa~~la~~l~~-------~~~~i~l~~~~~-~~~~i 201 (558)
-+-.||-..+......+...+... +.++++|+|++|.|||++++.+.+.... ..+++.+.+... +...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 344667666543335555555443 4589999999999999999999987651 234555543221 11111
Q ss_pred ------------------HHHHHHHHHhhhhcCCceEEEEeCCccC---CHHHHHHHHhhH----hcCcEEEEeccCCCC
Q 008664 202 ------------------RDAVEDARKLRVKSNKRTVLFVDEVHRF---NKSQQDSFLPVI----EDGSIVFIGATTENP 256 (558)
Q Consensus 202 ------------------~~~~~~~~~~~~~~~~~~il~IDEid~l---~~~~~~~Ll~~l----e~~~iilI~att~n~ 256 (558)
......+.... ..-+..+|+|||+|.+ +...|..+++.+ ++-++.+|++.|..-
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll-r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLL-RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHH-HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 11111111111 2236789999999986 233455555555 345566666655443
Q ss_pred C--CCCcHHhhcccceeeccCCCH-HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 257 S--FHLITPLLSRCRVLTLNPLKP-HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 257 ~--~~l~~aL~sR~~~i~~~~l~~-~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
. ..-++.+.+||..+.+++... ++...+|...-..+..+ ....--+++...+|...|+|.+..+.++|..+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr------~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~a 265 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLR------KPSNLASPELARRIHERSEGLIGELSRLLNAA 265 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCC------CCCCCCCHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 2 345689999999999998876 45666655443332211 12222355667899999999999999999999
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEA 373 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~ 373 (558)
+..+... | ...||.+.+..+
T Consensus 266 A~~AI~s-------------G-------~E~It~~~l~~~ 285 (302)
T PF05621_consen 266 AIAAIRS-------------G-------EERITREILDKI 285 (302)
T ss_pred HHHHHhc-------------C-------CceecHHHHhhC
Confidence 8887652 4 568999888764
No 220
>PRK07914 hypothetical protein; Reviewed
Probab=99.23 E-value=3.3e-09 Score=109.25 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=161.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ 233 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~ 233 (558)
+.+||||+----.......|.+... .+..+..+++.+... .+ +.++.. ...++.+.+|++++...+.+..
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~---~~-i~~~~t-~plF~~rRlV~v~~~~~~~~~~ 80 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST---YE-LAELLS-PSLFAEERVVVLEAAAEAGKDA 80 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH---HH-HHHhcC-CCCCCCceEEEEeChHhccHHH
Confidence 6789999988887776677665432 234566666655544 33 344443 3477889999999987777667
Q ss_pred HHHHHhhHhc--CcEEEEeccCCC-CCCCCcHHhhccc-ceeeccCC-CHHHHHHHHHHHHHhHhcccccccCCcccccC
Q 008664 234 QDSFLPVIED--GSIVFIGATTEN-PSFHLITPLLSRC-RVLTLNPL-KPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN 308 (558)
Q Consensus 234 ~~~Ll~~le~--~~iilI~att~n-~~~~l~~aL~sR~-~~i~~~~l-~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~ 308 (558)
.+.|..++++ ...++|+.++.. ...++.++|.... .++.+.++ +..++..++...+.+ .++.++
T Consensus 81 ~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~-----------~g~~i~ 149 (320)
T PRK07914 81 AALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRS-----------LRVKVD 149 (320)
T ss_pred HHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHH-----------cCCCCC
Confidence 7788888877 323344333222 2222334565553 58899998 999999999999988 899999
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcch
Q 008664 309 HDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEH 388 (558)
Q Consensus 309 ~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~ 388 (558)
+++++.|++..+||+..+.+.|+.++.+. ...||.++|++++.... ....
T Consensus 150 ~~A~~~L~~~~g~dl~~l~~EleKL~~~~------------------------~~~It~e~V~~~v~~~~------~~~v 199 (320)
T PRK07914 150 DDTVTALLDAVGSDLRELASACSQLVADT------------------------GGAVDAAAVRRYHSGKA------EVKG 199 (320)
T ss_pred HHHHHHHHHHHCccHHHHHHHHHHHhcCC------------------------CCCcCHHHHHHHcCCCe------echH
Confidence 99999999999999999999999875432 13699999999987542 3456
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHH
Q 008664 389 YNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARR 427 (558)
Q Consensus 389 ~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rr 427 (558)
|+++.++.. +|...|+..+.+|+..|+.|..|..-
T Consensus 200 f~L~dAi~~----g~~~~A~~~l~~L~~~ge~p~~il~~ 234 (320)
T PRK07914 200 FDIADKAVA----GDVAGAAEALRWAMMRGEPHVVLADA 234 (320)
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHHCCCchHHHHHH
Confidence 777777776 99999999999999999999766533
No 221
>PHA02244 ATPase-like protein
Probab=99.22 E-value=5.5e-10 Score=114.06 Aligned_cols=126 Identities=15% Similarity=0.210 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHH------HHHHHHHhhhhcCCceE
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRD------AVEDARKLRVKSNKRTV 220 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~------~~~~~~~~~~~~~~~~i 220 (558)
..+.+++..+ .+++|+||||||||++|+++|..++ .+|+.++.... ...+.. .+... ........+.+
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg--~pfv~In~l~d-~~~L~G~i~~~g~~~dg-pLl~A~~~Ggv 183 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD--LDFYFMNAIMD-EFELKGFIDANGKFHET-PFYEAFKKGGL 183 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC--CCEEEEecChH-HHhhcccccccccccch-HHHHHhhcCCE
Confidence 3445555555 5799999999999999999999998 88888875321 111110 11100 00111246789
Q ss_pred EEEeCCccCCHHHHHHHHhhHhc-------------CcEEEEeccCCC---------CCCCCcHHhhcccceeeccCCCH
Q 008664 221 LFVDEVHRFNKSQQDSFLPVIED-------------GSIVFIGATTEN---------PSFHLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 221 l~IDEid~l~~~~~~~Ll~~le~-------------~~iilI~att~n---------~~~~l~~aL~sR~~~i~~~~l~~ 278 (558)
|||||++.++++.+..|..++++ ..+.+|++++.+ ....+++++++||..+.|..++.
T Consensus 184 LiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 184 FFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred EEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 99999999999999999999974 235677776432 12467899999999999988874
No 222
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.21 E-value=1.4e-11 Score=114.54 Aligned_cols=86 Identities=24% Similarity=0.423 Sum_probs=62.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEecccccH-HH----HHHHHHHHHHhhhhcCCceEEEEeCCccCCH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVTSGV-KD----VRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~~~~-~~----i~~~~~~~~~~~~~~~~~~il~IDEid~l~~ 231 (558)
.+++|.||+|||||.+|+++|+.+. ...+++.++++.... .+ +..++...... .......||||||||++++
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~-v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGY-VGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCH-HHHHHHTEEEEETGGGCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccce-eeccchhhhhhHHHhhccc
Confidence 5799999999999999999999998 234889999876543 11 22222211100 0112345999999999999
Q ss_pred -----------HHHHHHHhhHhcCc
Q 008664 232 -----------SQQDSFLPVIEDGS 245 (558)
Q Consensus 232 -----------~~~~~Ll~~le~~~ 245 (558)
..|+.||+++|++.
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~ 107 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGT 107 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSE
T ss_pred cccccchhhHHHHHHHHHHHhcccc
Confidence 99999999998754
No 223
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1e-10 Score=120.26 Aligned_cols=256 Identities=18% Similarity=0.213 Sum_probs=160.0
Q ss_pred ccccccccCCchHHHHHHHHc----CCCCeEEEEcCCCchHHHHHHHHHHHhCCC---ceEEEEeccccc--HHHHHHHH
Q 008664 135 DVVGQDHLLSPNSLLRSAVCS----NRLPSIIFWGPPGTGKTTLAKAIVNSVAVS---YKFVCLSAVTSG--VKDVRDAV 205 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~----~~~~~~LL~GppGtGKTtLa~~la~~l~~~---~~~i~l~~~~~~--~~~i~~~~ 205 (558)
.+.|++... ..++.|+.. ...+++.++|-||+|||.+..-+....... ...+.+||...+ ..-+..++
T Consensus 151 ~l~gRe~e~---~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 151 TLKGRELEM---DIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CccchHHHH---HHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 467888776 777777654 455899999999999999998777776532 344788887531 11122222
Q ss_pred HH-----------------HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-----CcEEEEeccCC-CCCCCCcH
Q 008664 206 ED-----------------ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-----GSIVFIGATTE-NPSFHLIT 262 (558)
Q Consensus 206 ~~-----------------~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-----~~iilI~att~-n~~~~l~~ 262 (558)
.. ...........-|+++||+|.|....+..|..+++- .++++||..+. +..+.+.+
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 22 211111222457999999999998888877776654 56788887733 22344556
Q ss_pred Hhhccc----ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHHHH
Q 008664 263 PLLSRC----RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEISAI 335 (558)
Q Consensus 263 aL~sR~----~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~ 335 (558)
.|..|+ +++.|+|++.+++.+||...+... ....+-+.+++.+|+. ..||+|.++.+++.++.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~----------~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE----------STSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc----------cccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 666654 589999999999999999998761 3444555788888886 67999999999999988
Q ss_pred HhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcccccc---CC--CcchHHHHHHHHHHhcCCCHHHH
Q 008664 336 TAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYD---RA--GEEHYNLISALHKSMRGNDADAA 407 (558)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d---~~--~~~~~d~isal~ks~rgsd~~aa 407 (558)
.+..++.... ......+.. -.....|..+++-.++......-. +. ....--++..+...+||+..+..
T Consensus 378 I~E~e~r~~~--~~~l~~~~~--p~~~~~v~~~~va~viSk~~~s~~~~s~~slplqqkiilctl~~l~r~~kkd~s 450 (529)
T KOG2227|consen 378 IAEIEKRKIL--DDPLSPGTS--PEKKKKVGVEHVAAVISKVDGSPSARSRESLPLQQKIILCTLVLLIRGNKKDVS 450 (529)
T ss_pred HHHHHHhhcc--ccCCCCCCC--cccccccchHHHHHHhhhhccChhhhhhhhcCcccchhHHHHHHHHhccccccc
Confidence 8765321110 000000100 000245778888777765321100 00 11111244555666667664433
No 224
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.21 E-value=3e-11 Score=136.17 Aligned_cols=200 Identities=16% Similarity=0.254 Sum_probs=150.9
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCC---------------CC-eEEEEcCCCchHHHHHHHHHHHhCC
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR---------------LP-SIIFWGPPGTGKTTLAKAIVNSVAV 184 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~---------------~~-~~LL~GppGtGKTtLa~~la~~l~~ 184 (558)
..-|.++|+|.+..++.|..... ..+..|+...+ .. .++++||||+|||+.++.+++.++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~---~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g- 382 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSS---KKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG- 382 (871)
T ss_pred ccccccccccccHHhhhcccchh---hhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-
Confidence 35799999999999999998876 57777776541 02 479999999999999999999999
Q ss_pred CceEEEEecccc-cHHHHHHHHHHHHHh-------------hhhcCCceEEEEeCCccCCH---HHHHHHHhhHhcCcEE
Q 008664 185 SYKFVCLSAVTS-GVKDVRDAVEDARKL-------------RVKSNKRTVLFVDEVHRFNK---SQQDSFLPVIEDGSIV 247 (558)
Q Consensus 185 ~~~~i~l~~~~~-~~~~i~~~~~~~~~~-------------~~~~~~~~il~IDEid~l~~---~~~~~Ll~~le~~~ii 247 (558)
+.++++|+.+. +...+...+..+... ....+...||++||+|-+.. ..+..|-.++....+-
T Consensus 383 -~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~P 461 (871)
T KOG1968|consen 383 -FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRP 461 (871)
T ss_pred -cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCC
Confidence 99999998765 222222222221110 01123355999999999876 4566777777765555
Q ss_pred EEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHH
Q 008664 248 FIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVAL 327 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~ 327 (558)
+|+++++. ...-..++.+-|..++|..++.+.+...+..++.. +.+.|+++.++.+.+.++||+|+.+
T Consensus 462 iv~~cndr-~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s-----------e~~ki~~~~l~~~s~~~~~DiR~~i 529 (871)
T KOG1968|consen 462 LVCTCNDR-NLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS-----------EGIKISDDVLEEISKLSGGDIRQII 529 (871)
T ss_pred eEEEecCC-CCccccchhhhcceeeecCCcHHHHHhhhhhhhcc-----------cceecCcHHHHHHHHhcccCHHHHH
Confidence 55555321 12233456666789999999999999999999987 8889999999999999999999999
Q ss_pred HHHHHHHHHh
Q 008664 328 NALEISAITA 337 (558)
Q Consensus 328 ~~Le~a~~~a 337 (558)
+.|+.++...
T Consensus 530 ~~lq~~~~~~ 539 (871)
T KOG1968|consen 530 MQLQFWSLSK 539 (871)
T ss_pred HHHhhhhccc
Confidence 9999996653
No 225
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.21 E-value=1.1e-10 Score=113.79 Aligned_cols=174 Identities=21% Similarity=0.396 Sum_probs=104.2
Q ss_pred cccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC-ceEEEEecccc-cH---------------
Q 008664 136 VVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-YKFVCLSAVTS-GV--------------- 198 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~-~~~i~l~~~~~-~~--------------- 198 (558)
++|++..+ +.|.+++..+....++|+||.|+|||+|++.+.+.+... ...+.+..... ..
T Consensus 1 F~gR~~el---~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKEL---EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHH---HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHH---HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 46888777 888999988777899999999999999999999988411 11111111111 11
Q ss_pred --------------------------HHHHHHHHHHHHhhhhcCCceEEEEeCCccCC------HHHHHHHHhhHhc---
Q 008664 199 --------------------------KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN------KSQQDSFLPVIED--- 243 (558)
Q Consensus 199 --------------------------~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~------~~~~~~Ll~~le~--- 243 (558)
..+..+++... ..+.+.||+|||++.+. +.....|..+++.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLK----KKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHH----HCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHH----hcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 11111122111 22345899999999988 4445566666654
Q ss_pred -CcEEEEeccCCCC----CCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCccc--ccChHHHHHHH
Q 008664 244 -GSIVFIGATTENP----SFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRV--EVNHDAIEFLC 316 (558)
Q Consensus 244 -~~iilI~att~n~----~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~--~i~~~al~~La 316 (558)
..+.+|++.+... ...-...+..|+..+.+.|++.++..+++...... . . .++++.++.+.
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~-----------~-~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKE-----------L-IKLPFSDEDIEEIY 221 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHC-----------C-------HHHHHHHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHH-----------h-hcccCCHHHHHHHH
Confidence 4454444443211 11223456778888999999999999999998766 2 3 34999999999
Q ss_pred HhCCCCHHHHHH
Q 008664 317 SNCDGDARVALN 328 (558)
Q Consensus 317 ~~s~Gd~R~~~~ 328 (558)
..++|.++.+..
T Consensus 222 ~~~gG~P~~l~~ 233 (234)
T PF01637_consen 222 SLTGGNPRYLQE 233 (234)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHhCCCHHHHhc
Confidence 999999998754
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.20 E-value=1.5e-11 Score=110.69 Aligned_cols=105 Identities=26% Similarity=0.423 Sum_probs=71.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHh--------hhhcCCceEEEEeCCccCC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKL--------RVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~--------~~~~~~~~il~IDEid~l~ 230 (558)
+++|+||||||||++++.+|+.++ .+++.+++... ...++.....-.... .....++.++||||+++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~--~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG--RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT--CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh--cceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC
Confidence 589999999999999999999998 77777776554 233322111100000 0011257899999999999
Q ss_pred HHHHHHHHhhHhcCc---------------------EEEEeccCCCCCC----CCcHHhhccc
Q 008664 231 KSQQDSFLPVIEDGS---------------------IVFIGATTENPSF----HLITPLLSRC 268 (558)
Q Consensus 231 ~~~~~~Ll~~le~~~---------------------iilI~att~n~~~----~l~~aL~sR~ 268 (558)
.+.++.|+++++++. +.+|+++ |+.. .++++|++||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~--N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATM--NPRDKGRKELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEE--SSST--TTTTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEE--cCCCCCcCcCCHHHHhhC
Confidence 999999999997622 4566655 5544 8899999997
No 227
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.7e-11 Score=132.85 Aligned_cols=205 Identities=16% Similarity=0.242 Sum_probs=141.8
Q ss_pred chhhcCCCCCCccccc-cccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC----------CCceEEEEe
Q 008664 124 LSERMRPVNINDVVGQ-DHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA----------VSYKFVCLS 192 (558)
Q Consensus 124 l~~~~rp~~~~dviGq-~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~----------~~~~~i~l~ 192 (558)
+..+.+-..++.++|+ ++.+ +.+.+.+.+.+.++.+|.|+||+|||.++..+++... ....++.+.
T Consensus 176 l~p~a~~gkldPvigr~deei---rRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 176 LTPRARQGKLDPVIGRHDEEI---RRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred cChhhhccCCCCccCCchHHH---HHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 3444444457889998 6666 7888888888779999999999999999999999874 123333443
Q ss_pred ccccc---HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------HHHHHHHhhHhcCcEEEEeccCCCCC---C
Q 008664 193 AVTSG---VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------SQQDSFLPVIEDGSIVFIGATTENPS---F 258 (558)
Q Consensus 193 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------~~~~~Ll~~le~~~iilI~att~n~~---~ 258 (558)
....| ..++...++...+.....+.+.||||||+|.+.. +..+.|.+.+..+.+.+||+||...+ .
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~i 332 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLETYRKCI 332 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecccHHHHHHHH
Confidence 32222 2233333333333221245788999999999843 45667777888888999999996554 2
Q ss_pred CCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC------CCCHHHHHHHHHH
Q 008664 259 HLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC------DGDARVALNALEI 332 (558)
Q Consensus 259 ~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s------~Gd~R~~~~~Le~ 332 (558)
.-+|+|-+|++.+.++-++.++...+|...-.+++.+ .+..++++++...+..+ ..-+..++++.+.
T Consensus 333 ekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~-------hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dE 405 (898)
T KOG1051|consen 333 EKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVH-------HGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDE 405 (898)
T ss_pred hhCcchhhCcceeEeccCcccchhhhhhhhhhhhccc-------cCCcccccccccccchhhhhcccCcCchhcccHHHH
Confidence 4578999999999999999998888888776664443 46667766665555442 3345667777777
Q ss_pred HHHHhc
Q 008664 333 SAITAA 338 (558)
Q Consensus 333 a~~~a~ 338 (558)
++....
T Consensus 406 a~a~~~ 411 (898)
T KOG1051|consen 406 AAALVK 411 (898)
T ss_pred HHHHHh
Confidence 666543
No 228
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.7e-10 Score=111.56 Aligned_cols=144 Identities=22% Similarity=0.312 Sum_probs=97.6
Q ss_pred CceEEEEeCCccCCH------------HHHHHHHhhHhcC------------cEEEEeccCCC--CCCCCcHHhhccc-c
Q 008664 217 KRTVLFVDEVHRFNK------------SQQDSFLPVIEDG------------SIVFIGATTEN--PSFHLITPLLSRC-R 269 (558)
Q Consensus 217 ~~~il~IDEid~l~~------------~~~~~Ll~~le~~------------~iilI~att~n--~~~~l~~aL~sR~-~ 269 (558)
+.+||||||||.+.. ..|.-||+++|.. ++.||++..-. .+..+.|.|.-|| .
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 678999999998743 3578899999873 35677665321 2246789999999 4
Q ss_pred eeeccCCCHHHHHHHHHH----HHHhHhcccccccCCcccccChHHHHHHHHhC--------CCCHHHHHHHHHHHHHHh
Q 008664 270 VLTLNPLKPHDVEILLKR----AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC--------DGDARVALNALEISAITA 337 (558)
Q Consensus 270 ~i~~~~l~~~~i~~iL~~----~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s--------~Gd~R~~~~~Le~a~~~a 337 (558)
.+.+.+|+.++...||.. .+++|...+ +. .+-.+.+++++++.||+.+ +=.+|++..+|+++..--
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLl-kT-E~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLedi 407 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALL-KT-EGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDI 407 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHH-hh-cCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHh
Confidence 799999999999998864 233332222 11 1256778999999999872 226899999999887543
Q ss_pred cccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 338 AVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.-+. ++-.| ....|+.+-|++-+..
T Consensus 408 SFeA--------~d~~g------~~v~Id~~yV~~~l~~ 432 (444)
T COG1220 408 SFEA--------PDMSG------QKVTIDAEYVEEKLGD 432 (444)
T ss_pred CccC--------CcCCC------CeEEEcHHHHHHHHHH
Confidence 2210 00011 1457888888877764
No 229
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.19 E-value=1.3e-09 Score=117.04 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=134.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEeccccc-HHHHH------------------HHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLSAVTSG-VKDVR------------------DAVEDARKL 211 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~~~~~~-~~~i~------------------~~~~~~~~~ 211 (558)
..+.++|-||||||.+++.+.+.+. ..+.++++|+.... -.++- +.++.....
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 4799999999999999999998764 56888999985431 11111 111111111
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-----CcEEEEeccCC--CCCCCCcHHhhccc--ceeeccCCCHHHHH
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-----GSIVFIGATTE--NPSFHLITPLLSRC--RVLTLNPLKPHDVE 282 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-----~~iilI~att~--n~~~~l~~aL~sR~--~~i~~~~l~~~~i~ 282 (558)
+.......||+|||.|.|-...|+.|..+++- .++++|+..+. -|...+....-||. ..+.|.|++.+++.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq 582 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQ 582 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHH
Confidence 22334678999999999998889999888864 55666555432 23333444555665 68999999999999
Q ss_pred HHHHHHHHhHhcccccccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCC
Q 008664 283 ILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359 (558)
Q Consensus 283 ~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 359 (558)
+|+...+.. . ..++.++++.+++. -.||+|+++.++++|...+..+.. ..+.
T Consensus 583 ~Ii~~RL~~-----------~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~------~~k~------- 637 (767)
T KOG1514|consen 583 EIISARLKG-----------L-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV------KGKL------- 637 (767)
T ss_pred HHHHHhhcc-----------h-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc------cccc-------
Confidence 999988754 1 35688889888876 679999999999999998765210 0011
Q ss_pred CCccccCHHHHHHHHhh
Q 008664 360 PYVALVTLDDAKEAFQC 376 (558)
Q Consensus 360 ~~~~~It~e~v~~~l~~ 376 (558)
.....|+.-++.+++..
T Consensus 638 ~~~q~v~~~~v~~Ai~e 654 (767)
T KOG1514|consen 638 AVSQLVGILHVMEAINE 654 (767)
T ss_pred cccceeehHHHHHHHHH
Confidence 11346888888888775
No 230
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.6e-10 Score=114.07 Aligned_cols=176 Identities=22% Similarity=0.372 Sum_probs=122.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc-----HHHHHH----HHHHHHHhhhhcCCceEEEEeCCccC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG-----VKDVRD----AVEDARKLRVKSNKRTVLFVDEVHRF 229 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~-----~~~i~~----~~~~~~~~~~~~~~~~il~IDEid~l 229 (558)
.++||.||+|+|||.||+.||+-++ .+|...+|.... -+++.. ++..+... ......+||||||+|.+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld--VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n-VekAQqGIVflDEvDKi 303 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD--VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN-VEKAQQGIVFLDEVDKI 303 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC--CCeEEecccchhhcccccccHHHHHHHHHHHccCC-HHHHhcCeEEEehhhhh
Confidence 6899999999999999999999999 999999987652 123333 33333221 23346789999999998
Q ss_pred CH--------------HHHHHHHhhHhcC-----------------------cEEEEeccC-------------------
Q 008664 230 NK--------------SQQDSFLPVIEDG-----------------------SIVFIGATT------------------- 253 (558)
Q Consensus 230 ~~--------------~~~~~Ll~~le~~-----------------------~iilI~att------------------- 253 (558)
.+ ..|..||+++|.. .|.||+...
T Consensus 304 ~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGF 383 (564)
T KOG0745|consen 304 TKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGF 383 (564)
T ss_pred cccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhccc
Confidence 52 4789999999751 023322210
Q ss_pred --C-CC--------------------------------CCCCcHHhhcccc-eeeccCCCHHHHHHHHHHH----HHhHh
Q 008664 254 --E-NP--------------------------------SFHLITPLLSRCR-VLTLNPLKPHDVEILLKRA----VDDVN 293 (558)
Q Consensus 254 --~-n~--------------------------------~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~----l~~~~ 293 (558)
. ++ .+-+.|+|.-||- ++.|.+|+.+++..+|..= +.++.
T Consensus 384 g~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk 463 (564)
T KOG0745|consen 384 GAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYK 463 (564)
T ss_pred CCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHH
Confidence 0 00 1235677888885 6779999999999888642 22222
Q ss_pred cccccccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcc
Q 008664 294 NGLSKSVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEISAITAAV 339 (558)
Q Consensus 294 ~~~~~~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
..+ ...+-.+.++++|++.|++. -+-.+|-+..+||.+++.+.-
T Consensus 464 ~lf--~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 464 KLF--GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred HHh--ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 222 11235677899999999998 355789999999999887654
No 231
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.18 E-value=3.1e-09 Score=109.73 Aligned_cols=231 Identities=15% Similarity=0.155 Sum_probs=164.7
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
..+...++.+.+ +.++|||.-=--....+..|.+.... +... + ......++.++++.+...+ .++.+.+|++.
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~---~-~~~~~~~~~~i~~~~~t~p-lF~~~rlViv~ 78 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELK---T-LYFDEYDFEQAKDFLSQSS-LFGGKNLLIIK 78 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhh---h-hchhhccHHHHHHHHhccc-ccCCceEEEEe
Confidence 466677777755 78999998877777777777766531 1111 1 1111234667777776664 67788899998
Q ss_pred CCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCC-CCcHHhhcc--cceeeccCCCHHHHHHHHHHHHHhHhcccccc
Q 008664 225 EVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSF-HLITPLLSR--CRVLTLNPLKPHDVEILLKRAVDDVNNGLSKS 299 (558)
Q Consensus 225 Eid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~-~l~~aL~sR--~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~ 299 (558)
+...+.....+.|..++++ ...++|......... ++.+.+... ..++.+.+++..++..++...+.+
T Consensus 79 ~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~-------- 150 (328)
T PRK08487 79 LDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKE-------- 150 (328)
T ss_pred cccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHH--------
Confidence 8776666666788888765 334444322211111 111222222 347889999999999999999988
Q ss_pred cCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccc
Q 008664 300 VGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHL 379 (558)
Q Consensus 300 ~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~ 379 (558)
.++.+++++++.|+..+++|...+.+.|+.++.+.. .||.++|+.++....
T Consensus 151 ---~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-------------------------~It~edV~~~v~~~~- 201 (328)
T PRK08487 151 ---LGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-------------------------PITLKDIQELVFGLG- 201 (328)
T ss_pred ---hCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-------------------------CCCHHHHHHHhcccc-
Confidence 899999999999999999999999999999998832 499999999987542
Q ss_pred cccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhh
Q 008664 380 AYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVR 430 (558)
Q Consensus 380 ~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~ 430 (558)
....++++.|+.. ++ .++..+.+|+..|++|..|.+-+.+
T Consensus 202 -----e~~vF~l~dai~~----g~--~a~~~l~~L~~~g~~pi~Il~~L~r 241 (328)
T PRK08487 202 -----SVSFEDFFEKLLN----KK--DIKDDLEKLLEEGFNEIALLNSLER 241 (328)
T ss_pred -----cccHHHHHHHHHC----CC--cHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4557888888876 44 3677889999999999877655543
No 232
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.18 E-value=7.2e-11 Score=102.40 Aligned_cols=107 Identities=27% Similarity=0.429 Sum_probs=60.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc-cccHHHHHHH--HHHHHH-hhhhcC--CceEEEEeCCccCCHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV-TSGVKDVRDA--VEDARK-LRVKSN--KRTVLFVDEVHRFNKSQ 233 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~-~~~~~~i~~~--~~~~~~-~~~~~~--~~~il~IDEid~l~~~~ 233 (558)
++||+|+||+|||++|+++|+.++ ..|..+.+. +..-.++... ++.... .....+ -..|+++|||++..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~--~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG--LSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT----EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcC--CceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHH
Confidence 589999999999999999999999 566555543 2222222211 000000 000001 23599999999999999
Q ss_pred HHHHHhhHhcCcEE------------EEeccCCCCC-----CCCcHHhhcccc
Q 008664 234 QDSFLPVIEDGSIV------------FIGATTENPS-----FHLITPLLSRCR 269 (558)
Q Consensus 234 ~~~Ll~~le~~~ii------------lI~att~n~~-----~~l~~aL~sR~~ 269 (558)
|.+||+.|+++++. +|.|| .||. +.++.+++.||.
T Consensus 79 QsAlLeam~Er~Vt~~g~~~~lp~pf~ViAT-qNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 79 QSALLEAMEERQVTIDGQTYPLPDPFFVIAT-QNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHSEEEETTEEEE--SS-EEEEE-E-TT--S------HHHHTTSS
T ss_pred HHHHHHHHHcCeEEeCCEEEECCCcEEEEEe-cCccccCceecCCHHHhcccc
Confidence 99999999986653 23333 3553 468889998874
No 233
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.6e-11 Score=123.92 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=112.3
Q ss_pred CCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEecccc-----------
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAVTS----------- 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~~~~----------- 196 (558)
..+|.||+||++.+ +.+.-+...+ +++||+||||||||.+|+.+..-+.. ....++++...+
T Consensus 175 ~~D~~DV~GQ~~AK---rAleiAAAGg--HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~ 249 (490)
T COG0606 175 APDFKDVKGQEQAK---RALEIAAAGG--HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPL 249 (490)
T ss_pred CcchhhhcCcHHHH---HHHHHHHhcC--CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCcc
Confidence 34789999999987 7776666665 78999999999999999998877651 011111111000
Q ss_pred ----------cHHHHHHHHHHH---HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc---------------EEE
Q 008664 197 ----------GVKDVRDAVEDA---RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS---------------IVF 248 (558)
Q Consensus 197 ----------~~~~i~~~~~~~---~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~---------------iil 248 (558)
.......++..- +-.......++||||||+-.+.....+.|.+-||++. +.+
T Consensus 250 ~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fql 329 (490)
T COG0606 250 KIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQL 329 (490)
T ss_pred ceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEE
Confidence 000011111111 0001122367899999999999999999999999975 346
Q ss_pred EeccCCCCC---------------------CCCcHHhhcccc-eeeccCCCH-------------HHHHHHHHHHHHhHh
Q 008664 249 IGATTENPS---------------------FHLITPLLSRCR-VLTLNPLKP-------------HDVEILLKRAVDDVN 293 (558)
Q Consensus 249 I~att~n~~---------------------~~l~~aL~sR~~-~i~~~~l~~-------------~~i~~iL~~~l~~~~ 293 (558)
|++++..+- .++...|+.|+. .+..+.++. ..+++.+.+.-....
T Consensus 330 v~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~ 409 (490)
T COG0606 330 VAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQI 409 (490)
T ss_pred hhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 777743221 134556777873 455555542 333333333222211
Q ss_pred cccccccCCc--ccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 294 NGLSKSVGGT--RVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 294 ~~~~~~~~~~--~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
.+. ++. +..++.++++..+.....+...+...+
T Consensus 410 ~R~----~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al 444 (490)
T COG0606 410 ARA----GRIGINAELSEEALRKFCALQREDADLLKAAL 444 (490)
T ss_pred HHh----hccCcchhcCHHHHHHhcccCHhHHHHHHHHH
Confidence 121 222 566777788777766555444444433
No 234
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=4.4e-09 Score=100.63 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCC-CeEEEEcCCC-chHHHHHHHHHHHhCC-------CceEEEEec--------ccccHHHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRL-PSIIFWGPPG-TGKTTLAKAIVNSVAV-------SYKFVCLSA--------VTSGVKDVRDAVEDAR 209 (558)
Q Consensus 147 ~~l~~~i~~~~~-~~~LL~GppG-tGKTtLa~~la~~l~~-------~~~~i~l~~--------~~~~~~~i~~~~~~~~ 209 (558)
..+.+.++.+++ +++||.|..+ +||..++..+++.+.+ +.++..+.. ...+++++|++.+...
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~ 82 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLS 82 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHh
Confidence 567788888887 7899999998 9999999998888752 234444432 2347889999888775
Q ss_pred HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHH
Q 008664 210 KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287 (558)
Q Consensus 210 ~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~ 287 (558)
..+ ..++..|++|+++|.|+..+.++||+++|+ ...++|..|+ + ...+.+.++|||+.+.|+.+......++...
T Consensus 83 ~~p-~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~-~-~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 83 KTS-AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITS-R-AASIISTIRSRCFKINVRSSILHAYNELYSQ 159 (263)
T ss_pred hCc-ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeC-C-hhhCchhHhhceEEEeCCCCCHHHHHHHHHH
Confidence 543 557889999999999999999999999999 4456665553 3 3478999999999999999999877777666
Q ss_pred HHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008664 288 AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAI 335 (558)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~ 335 (558)
.+. ...+...+++|.+...-|....+...+.+..
T Consensus 160 ~~~--------------p~~~~~~l~~i~~~~~~d~~~w~~~~~~~~~ 193 (263)
T PRK06581 160 FIQ--------------PIADNKTLDFINRFTTKDRELWLDFIDNLLL 193 (263)
T ss_pred hcc--------------cccccHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 542 2334556888888866666555555554443
No 235
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=2e-09 Score=110.32 Aligned_cols=220 Identities=25% Similarity=0.342 Sum_probs=137.1
Q ss_pred CCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCc-------------------------
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY------------------------- 186 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~------------------------- 186 (558)
.|.-++||+... ..|....-...+.++||-|+.|+||||++|+|+.-+..-.
T Consensus 15 pf~aivGqd~lk---~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 15 PFTAIVGQDPLK---LALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred chhhhcCchHHH---HHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhc
Confidence 345688998776 4444444556678999999999999999999999986100
Q ss_pred -------------eEEEEecccc-----cHHHHHHHHHHHHH----hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC
Q 008664 187 -------------KFVCLSAVTS-----GVKDVRDAVEDARK----LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG 244 (558)
Q Consensus 187 -------------~~i~l~~~~~-----~~~~i~~~~~~~~~----~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~ 244 (558)
+|+.+--... |.-++...++.-.+ .+....+++|++|||+..|+...++.||..+++|
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG 171 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG 171 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence 0111100000 11122222222111 1223457899999999999999999999999885
Q ss_pred ---------------cEEEEeccCCCC-CCCCcHHhhccc-ceeeccC-CCHHHHHHHHHHHHHh----------H---h
Q 008664 245 ---------------SIVFIGATTENP-SFHLITPLLSRC-RVLTLNP-LKPHDVEILLKRAVDD----------V---N 293 (558)
Q Consensus 245 ---------------~iilI~att~n~-~~~l~~aL~sR~-~~i~~~~-l~~~~i~~iL~~~l~~----------~---~ 293 (558)
.+++|+++ || ...|.+.|+.|| ..+...+ .+.++...|+++.+.- + .
T Consensus 172 ~n~vereGisi~hpa~fvligTm--NPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~ 249 (423)
T COG1239 172 VNDVEREGISIRHPARFLLIGTM--NPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQ 249 (423)
T ss_pred CceeeeCceeeccCccEEEEeec--CccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 26678877 54 468899999998 3555544 4446666666655441 0 0
Q ss_pred ccc-----ccccCCcccccChHHHHHHHHhCC----CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccc
Q 008664 294 NGL-----SKSVGGTRVEVNHDAIEFLCSNCD----GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364 (558)
Q Consensus 294 ~~~-----~~~~~~~~~~i~~~al~~La~~s~----Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (558)
..+ ....+-..+.+++++..+++..+. ...|..+.+.+.+...+... | ...
T Consensus 250 ~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~-------------G-------r~~ 309 (423)
T COG1239 250 RALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALR-------------G-------RTE 309 (423)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhc-------------C-------cee
Confidence 000 011123567778888777777621 12566666666666555432 4 567
Q ss_pred cCHHHHHHHHhh
Q 008664 365 VTLDDAKEAFQC 376 (558)
Q Consensus 365 It~e~v~~~l~~ 376 (558)
++.+|++++...
T Consensus 310 v~~~Di~~a~~l 321 (423)
T COG1239 310 VEEEDIREAAEL 321 (423)
T ss_pred eehhhHHHHHhh
Confidence 888999887764
No 236
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=8e-10 Score=115.78 Aligned_cols=145 Identities=21% Similarity=0.343 Sum_probs=92.5
Q ss_pred CCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC-----ceEEEEecccc-----------
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-----YKFVCLSAVTS----------- 196 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~-----~~~i~l~~~~~----------- 196 (558)
++++++.++.+ ..+...+..+ .+++|+||||||||++|+.+|..+... ...+.+.....
T Consensus 174 l~d~~i~e~~l---e~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTI---ETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHH---HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC
Confidence 45566665555 6666666544 689999999999999999999988522 22333332111
Q ss_pred --cHH----HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH-HHHHHhhHhcC------------------------c
Q 008664 197 --GVK----DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ-QDSFLPVIEDG------------------------S 245 (558)
Q Consensus 197 --~~~----~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~-~~~Ll~~le~~------------------------~ 245 (558)
+.. -+.++...+... ...+.+||||||++.+.+. ...|+.+||.+ .
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~---p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N 325 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQ---PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN 325 (459)
T ss_pred CCCeEecCchHHHHHHHHHhc---ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCC
Confidence 111 122233333321 2357899999999998664 66777777631 2
Q ss_pred EEEEeccCCCCC--CCCcHHhhcccceeeccC-CCHHHHHHHH
Q 008664 246 IVFIGATTENPS--FHLITPLLSRCRVLTLNP-LKPHDVEILL 285 (558)
Q Consensus 246 iilI~att~n~~--~~l~~aL~sR~~~i~~~~-l~~~~i~~iL 285 (558)
+.+|++++.... ..++.+|++||..+.+.| ++.+.++.++
T Consensus 326 l~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 326 VYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred eEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 567777743322 268899999999999887 4545444443
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.08 E-value=1.7e-10 Score=103.75 Aligned_cols=124 Identities=20% Similarity=0.374 Sum_probs=82.6
Q ss_pred cccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHHHHHHHhhhh
Q 008664 138 GQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDARKLRVK 214 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~ 214 (558)
|....+ +.+++.+.. ....+++|+|++||||+++|+.|+..... ...|+.+++.... .++++.
T Consensus 2 G~S~~~---~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----~~~l~~------- 67 (138)
T PF14532_consen 2 GKSPAM---RRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----AELLEQ------- 67 (138)
T ss_dssp -SCHHH---HHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----HHHHHH-------
T ss_pred CCCHHH---HHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----HHHHHH-------
Confidence 454444 555555543 23478999999999999999999998763 3455656665544 223332
Q ss_pred cCCceEEEEeCCccCCHHHHHHHHhhHhc---CcEEEEeccCCCCCC-----CCcHHhhccc--ceeeccCC
Q 008664 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIED---GSIVFIGATTENPSF-----HLITPLLSRC--RVLTLNPL 276 (558)
Q Consensus 215 ~~~~~il~IDEid~l~~~~~~~Ll~~le~---~~iilI~att~n~~~-----~l~~aL~sR~--~~i~~~~l 276 (558)
..+++|+|+|+|.++.+.|..|+.+++. ..+.+|++++.+... .+.+.|..|+ ..+.++||
T Consensus 68 -a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 68 -AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp -CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE---
T ss_pred -cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCCC
Confidence 2678999999999999999999999975 467888877665543 4567777776 36667664
No 238
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.07 E-value=1.8e-09 Score=115.90 Aligned_cols=222 Identities=21% Similarity=0.299 Sum_probs=131.9
Q ss_pred CCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC--ceEEEEecccc--c---------
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS--YKFVCLSAVTS--G--------- 197 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~--~~~i~l~~~~~--~--------- 197 (558)
.+|.+++||...+ ..+.-.+..+ .+++|.||||+|||++++.++..+... ...++.....+ +
T Consensus 188 ~d~~~v~Gq~~~~---~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~ 262 (506)
T PRK09862 188 HDLSDVIGQEQGK---RGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWR 262 (506)
T ss_pred cCeEEEECcHHHH---hhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcC
Confidence 3778888887665 4444333333 789999999999999999999876521 11222222100 0
Q ss_pred ---------HHHHHHHHHH---HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc---------------EEEEe
Q 008664 198 ---------VKDVRDAVED---ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS---------------IVFIG 250 (558)
Q Consensus 198 ---------~~~i~~~~~~---~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~---------------iilI~ 250 (558)
......++.. ..........+++|||||++.++...++.|++.||++. +.+|+
T Consensus 263 ~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIA 342 (506)
T PRK09862 263 QRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVA 342 (506)
T ss_pred CCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEE
Confidence 0000111111 00011123467899999999999999999999998865 35777
Q ss_pred ccCCCCC-------------------CCCcHHhhcccc-eeeccCCCHHHHH----------HHHHHHHHhH----hc--
Q 008664 251 ATTENPS-------------------FHLITPLLSRCR-VLTLNPLKPHDVE----------ILLKRAVDDV----NN-- 294 (558)
Q Consensus 251 att~n~~-------------------~~l~~aL~sR~~-~i~~~~l~~~~i~----------~iL~~~l~~~----~~-- 294 (558)
+++..+. .++..++++||. .+.+++++.+++. .+.+++.... .+
T Consensus 343 a~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~ 422 (506)
T PRK09862 343 AMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQN 422 (506)
T ss_pred eecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHH
Confidence 7754331 247779999995 5677766432221 1222222110 00
Q ss_pred ccccccC----CcccccChHHHHHHHH---hCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCH
Q 008664 295 GLSKSVG----GTRVEVNHDAIEFLCS---NCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367 (558)
Q Consensus 295 ~~~~~~~----~~~~~i~~~al~~La~---~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~ 367 (558)
.+..... ...+.+++++.+.+.. ..+-..|....+|..+...+..+ | ...|+.
T Consensus 423 ~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~-------------g-------~~~V~~ 482 (506)
T PRK09862 423 KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADID-------------Q-------SDIITR 482 (506)
T ss_pred HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-------------C-------CCCCCH
Confidence 0000000 0123455555554433 24457899999998888887653 4 578999
Q ss_pred HHHHHHHhhc
Q 008664 368 DDAKEAFQCK 377 (558)
Q Consensus 368 e~v~~~l~~~ 377 (558)
+|+.+++.-+
T Consensus 483 ~hv~eAl~yR 492 (506)
T PRK09862 483 QHLQEAVSYR 492 (506)
T ss_pred HHHHHHHHhh
Confidence 9999999854
No 239
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.07 E-value=2.5e-09 Score=120.08 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=79.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCC-----ceEEEEecccccHHHHHHH-HHHH--HHhhhhcCCceEEEEeCCccCCH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVS-----YKFVCLSAVTSGVKDVRDA-VEDA--RKLRVKSNKRTVLFVDEVHRFNK 231 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~-----~~~i~l~~~~~~~~~i~~~-~~~~--~~~~~~~~~~~il~IDEid~l~~ 231 (558)
++||+|+||||||++|+.+++..... ..+..+++..... .... .... .........+++++|||++.|+.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~--~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~ 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK--FNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh--hcccccCcccccCCcEEEcCCCeEEecchhhCCH
Confidence 89999999999999999999976411 1222222221110 0000 0000 00011234578999999999999
Q ss_pred HHHHHHHhhHhcCc---------------EEEEeccCCCCC-------------CCCcHHhhcccc-e-eeccCCCHHHH
Q 008664 232 SQQDSFLPVIEDGS---------------IVFIGATTENPS-------------FHLITPLLSRCR-V-LTLNPLKPHDV 281 (558)
Q Consensus 232 ~~~~~Ll~~le~~~---------------iilI~att~n~~-------------~~l~~aL~sR~~-~-i~~~~l~~~~i 281 (558)
..|..|+.+||++. +.+|+++ ||. ..++++|+|||. + +.+..++.+.=
T Consensus 572 ~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAa--NP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D 649 (915)
T PTZ00111 572 ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASC--NPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTD 649 (915)
T ss_pred HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEc--CCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHH
Confidence 99999999998754 3567766 442 357799999994 3 34566666554
Q ss_pred HHHHHHHH
Q 008664 282 EILLKRAV 289 (558)
Q Consensus 282 ~~iL~~~l 289 (558)
..+..+++
T Consensus 650 ~~lA~hI~ 657 (915)
T PTZ00111 650 QLISLSIA 657 (915)
T ss_pred HHHHHHHH
Confidence 44544444
No 240
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.3e-09 Score=112.13 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=115.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCC--ceEEEEecccc---cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH-
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVS--YKFVCLSAVTS---GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS- 232 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~--~~~i~l~~~~~---~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~- 232 (558)
+++||+||+|+|||.|++++++++..+ ..+..++|+.. ..+.+...+..+.... ....++||++|++|.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~-~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA-LWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH-HhhCCcEEEEcchhhhhccC
Confidence 789999999999999999999998632 34555667654 3444444444443332 3347899999999988431
Q ss_pred ---------H---HHHHH-hhH----hcCc-EEEEeccCCCCCCCCcHHhhc--ccc-eeeccCCCHHHHHHHHHHHHHh
Q 008664 233 ---------Q---QDSFL-PVI----EDGS-IVFIGATTENPSFHLITPLLS--RCR-VLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 233 ---------~---~~~Ll-~~l----e~~~-iilI~att~n~~~~l~~aL~s--R~~-~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
. ...++ +++ +.+. +.+|++. +....+++.|.+ +|+ ++.+++|...+..+||+..+.+
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~--qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG--QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec--hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 1 11222 333 2333 4566654 555577777776 444 7889999999999999999987
Q ss_pred HhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHHHHHHHHHhc
Q 008664 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNALEISAITAA 338 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~Le~a~~~a~ 338 (558)
....+..+.++.++..+.| +++.+.-..+++...+.
T Consensus 589 -----------~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ 625 (952)
T KOG0735|consen 589 -----------NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAF 625 (952)
T ss_pred -----------hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHH
Confidence 3445566778889988888 67778888888876654
No 241
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4e-09 Score=118.30 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=130.6
Q ss_pred CccccccccCCchHHHHHHHHcCC--------CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccc---------
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNR--------LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVT--------- 195 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~--------~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~--------- 195 (558)
+.|+||++++ ..+..++...+ ...++|.||.|+|||-||+++|..+. ....++.++.+.
T Consensus 562 ~~V~gQ~eAv---~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAV---AAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHH---HHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 3588999998 88888887644 25799999999999999999999985 345677776654
Q ss_pred -----ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCC---
Q 008664 196 -----SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTE--- 254 (558)
Q Consensus 196 -----~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~--- 254 (558)
.|.+....+.+..++ .++.||+||||+..+...++.|++++++|+ .+||.+++.
T Consensus 639 sp~gyvG~e~gg~Lteavrr-----rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~ 713 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKR-----RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSS 713 (898)
T ss_pred CCcccccchhHHHHHHHHhc-----CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchH
Confidence 144455555555544 378999999999999999999999999865 344444211
Q ss_pred ---CC-C-------------------------------CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhccccc
Q 008664 255 ---NP-S-------------------------------FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298 (558)
Q Consensus 255 ---n~-~-------------------------------~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~ 298 (558)
+. . ....+++++|+ .++.|.+++.+++.+++...+.....++..
T Consensus 714 ~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~ 793 (898)
T KOG1051|consen 714 AIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEE 793 (898)
T ss_pred hhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhh
Confidence 00 0 12234555555 467799999998888888777664444311
Q ss_pred ccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHHHHH
Q 008664 299 SVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEISAIT 336 (558)
Q Consensus 299 ~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~ 336 (558)
. .....+.+.+...++.. ..+-+|.+...++.....
T Consensus 794 ~--~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~ 832 (898)
T KOG1051|consen 794 R--ELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFEN 832 (898)
T ss_pred h--HHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHH
Confidence 0 02334555555555554 344566666666665544
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.98 E-value=3.8e-09 Score=108.02 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=65.9
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhcCcE-------------EEEeccCCCCC-------CCCcHHhhcccceeeccCC
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGSI-------------VFIGATTENPS-------FHLITPLLSRCRVLTLNPL 276 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~~~i-------------ilI~att~n~~-------~~l~~aL~sR~~~i~~~~l 276 (558)
+++|+-|+|+.....+.+..||..++++.+ ++|+++ |+. .+...+|++||..+.++.+
T Consensus 236 NrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~s--Ne~e~~~~~~~k~~eaf~dR~~~i~vpY~ 313 (361)
T smart00763 236 NRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHS--NESEWQRFKSNKKNEALLDRIIKVKVPYC 313 (361)
T ss_pred cCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeC--CHHHHhhhhccccchhhhhceEEEeCCCc
Confidence 678999999999999999999999987442 344544 332 3568999999998888765
Q ss_pred C-HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh
Q 008664 277 K-PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN 318 (558)
Q Consensus 277 ~-~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~ 318 (558)
. .++-.+|.++.+... . .....+.+.+++.++..
T Consensus 314 l~~~~E~~Iy~k~~~~s--~------~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 314 LRVSEEAQIYEKLLRNS--D------LTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCHHHHHHHHHHHhccC--c------CcccccCchHHHHHHHH
Confidence 4 466677777776540 0 13456777776666544
No 243
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=98.96 E-value=3.1e-07 Score=95.13 Aligned_cols=263 Identities=19% Similarity=0.211 Sum_probs=176.2
Q ss_pred HHHHHHcC-CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec--ccccHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 149 LRSAVCSN-RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA--VTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 149 l~~~i~~~-~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
+...+..+ ..+.+++||+.=-=....+..+.+... ...+..+- ......++..++....... .++.+.+++|..
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-lF~~~~~v~l~~ 82 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL--ADGFDENYSFFDDSELDWADLLSELESPS-LFGEKRLVVLKN 82 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHh--ccchhhHHhhcccccCCHHHHHHHhhccc-cccCCeeEEEEC
Confidence 33444443 458899999987767777777777665 22122221 1222334555565555543 566778888988
Q ss_pred CccCC-HHHHHHHHhhHhc-C-cEEEEeccCCCC--CCCCcHHhhcc--cceeeccCCCHHHHHHHHHHHHHhHhccccc
Q 008664 226 VHRFN-KSQQDSFLPVIED-G-SIVFIGATTENP--SFHLITPLLSR--CRVLTLNPLKPHDVEILLKRAVDDVNNGLSK 298 (558)
Q Consensus 226 id~l~-~~~~~~Ll~~le~-~-~iilI~att~n~--~~~l~~aL~sR--~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~ 298 (558)
..... .+....+...... . ..+++....... .....+.+..- +.++.+.+++..++..++...+.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~------- 155 (334)
T COG1466 83 AEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKE------- 155 (334)
T ss_pred CCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHH-------
Confidence 88765 4433344433333 3 333333222111 11122222222 458999999999999999999988
Q ss_pred ccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 299 SVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 299 ~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
.++.++++++++|+...+||.+.+.+.++.++.+... . .||.++|++++....
T Consensus 156 ----~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~----------------------~-~I~~~~V~~~v~~~~ 208 (334)
T COG1466 156 ----LGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGD----------------------K-EITLEDVEEVVSDVA 208 (334)
T ss_pred ----cCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCC----------------------C-cCCHHHHHHHHhccc
Confidence 8999999999999999999999999999999999764 3 799999999988542
Q ss_pred ccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccc--------cccccCChHhHHHHHHH
Q 008664 379 LAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFAS--------EDVGLADPLALNQAVSC 450 (558)
Q Consensus 379 ~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~--------edigla~~~a~~~~~~~ 450 (558)
....++++.++.+ +|...|+..+.+++..||+|.-|.+-|...-. .+-|. ..
T Consensus 209 ------~~~~f~l~dail~----g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~----------~~ 268 (334)
T COG1466 209 ------EFNIFDLADALLK----GDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGK----------SL 268 (334)
T ss_pred ------cCCHHHHHHHHHC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCc----------CH
Confidence 3445666666666 99999999999999999999888776654432 11111 14
Q ss_pred HHHHHHhCCchhhHHHHH
Q 008664 451 YQACHFLGMPECNVILAQ 468 (558)
Q Consensus 451 ~~a~~~~G~pe~~~~l~~ 468 (558)
.+++..+|.|.-+..+..
T Consensus 269 ~~~~~~l~~~~~~~~~~~ 286 (334)
T COG1466 269 QQAAKSLGIPYRRKKLFK 286 (334)
T ss_pred HHHHHHhcCcHHHHHHHH
Confidence 566677777776665543
No 244
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.93 E-value=1.8e-08 Score=110.63 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=132.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-----cHHHHHHHHHHHHH----hhhhcCCceEEEEeCCc
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-----GVKDVRDAVEDARK----LRVKSNKRTVLFVDEVH 227 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-----~~~~i~~~~~~~~~----~~~~~~~~~il~IDEid 227 (558)
.+..++|.|++|+|||++++.++..+....+|+.+....+ |.-++...+..-.. .......++||||||+.
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 5688999999999999999999999875457776654332 22333333332221 01123357899999999
Q ss_pred cCCHHHHHHHHhhHhcCcE---------------EEEeccCCCC---CCCCcHHhhccc-ceeeccCCCHHHHHHH---H
Q 008664 228 RFNKSQQDSFLPVIEDGSI---------------VFIGATTENP---SFHLITPLLSRC-RVLTLNPLKPHDVEIL---L 285 (558)
Q Consensus 228 ~l~~~~~~~Ll~~le~~~i---------------ilI~att~n~---~~~l~~aL~sR~-~~i~~~~l~~~~i~~i---L 285 (558)
.+.+..++.|++.|++|.+ .+|++ .|+ ...+.++++.|| ..+.+..++..+.... -
T Consensus 104 ~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~ 181 (584)
T PRK13406 104 RLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDA 181 (584)
T ss_pred cCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCH
Confidence 9999999999999998753 34553 343 256889999999 4788888877654321 0
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHh---CCC-CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCC
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDG-DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPY 361 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~G-d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
.++... ...+ .++.++++.++++++. .+- ..|..+.++..+...+..+ |
T Consensus 182 ~~I~~A-R~rl------~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~-------------G------- 234 (584)
T PRK13406 182 DDIAAA-RARL------PAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA-------------G------- 234 (584)
T ss_pred HHHHHH-HHHH------ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc-------------C-------
Confidence 111111 1122 4788999999998876 222 6799999999888887653 4
Q ss_pred ccccCHHHHHHHHhh
Q 008664 362 VALVTLDDAKEAFQC 376 (558)
Q Consensus 362 ~~~It~e~v~~~l~~ 376 (558)
...|+.+||++++.-
T Consensus 235 r~~V~~~dv~~Aa~l 249 (584)
T PRK13406 235 RTAVEEEDLALAARL 249 (584)
T ss_pred CCCCCHHHHHHHHHH
Confidence 568999999988763
No 245
>PF13173 AAA_14: AAA domain
Probab=98.92 E-value=5.7e-09 Score=92.56 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=77.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHH--HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRD--AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDS 236 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~--~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~ 236 (558)
+.++|+||.||||||+++.+++.+.....++.++..+........ +.+...+. ......+||||||+.+. +....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~iDEiq~~~-~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL--IKPGKKYIFIDEIQYLP-DWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh--hccCCcEEEEehhhhhc-cHHHH
Confidence 468999999999999999999887533456666665543322211 11222221 11256899999999996 45666
Q ss_pred HHhhHhcC-cEEEEeccC--CCCCCCCcHHhhcccceeeccCCCHHHH
Q 008664 237 FLPVIEDG-SIVFIGATT--ENPSFHLITPLLSRCRVLTLNPLKPHDV 281 (558)
Q Consensus 237 Ll~~le~~-~iilI~att--~n~~~~l~~aL~sR~~~i~~~~l~~~~i 281 (558)
+..+.+.+ .+.+|.+++ ..........+..|...+.+.|++-.|.
T Consensus 80 lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 80 LKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 66666665 344444333 2222345567778889999999998764
No 246
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=7.3e-09 Score=96.50 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=105.5
Q ss_pred ecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccc
Q 008664 192 SAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCR 269 (558)
Q Consensus 192 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~ 269 (558)
.....+++++|++++.+.... ..+. ++|+++|.|+...+++||+.+|+ ..++||.+|+ + ...+.+.++|||+
T Consensus 33 ~~~~i~Vd~iReii~~~~~~~---~~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~-~-~~~llpTI~SRc~ 106 (206)
T PRK08485 33 IKEEFKIEDAKEVIAEAYIAE---SEEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAK-S-KNLLLPTIRSRLI 106 (206)
T ss_pred CCCCCCHHHHHHHHHHHhhCC---CCcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeC-C-hHhCchHHHhhhe
Confidence 444779999999999876543 2333 56889999999999999999999 5677777664 3 3478999999998
Q ss_pred e-------------eeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 270 V-------------LTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 270 ~-------------i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
+ +.|.+++.+++...|.. +.+ +++...+++++.|++.+.|.+|.++.+.++...+
T Consensus 107 ~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~k-----------e~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 107 IEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEK-----------ENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred eccccccccccccccccCCCCHHHHHHHHHH-HHH-----------cccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 6 77999999999999998 555 6777789999999999999999999888888776
Q ss_pred hc
Q 008664 337 AA 338 (558)
Q Consensus 337 a~ 338 (558)
..
T Consensus 175 f~ 176 (206)
T PRK08485 175 FD 176 (206)
T ss_pred HH
Confidence 53
No 247
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=2.9e-09 Score=104.75 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHHHHH---HHhhhhcCCceEEEEeCC--ccCCH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDA---RKLRVKSNKRTVLFVDEV--HRFNK 231 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~~~~---~~~~~~~~~~~il~IDEi--d~l~~ 231 (558)
..+++|+||||||||+||.+|++.+.. ...++.++.. .-...++..+... ...........+|+|||+ +..+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~-~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~ 179 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP-DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETK 179 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH-HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCH
Confidence 368999999999999999999999852 2334444332 1122222222110 011122347789999999 56678
Q ss_pred HHHHHHHhhHhc---CcEEEEecc
Q 008664 232 SQQDSFLPVIED---GSIVFIGAT 252 (558)
Q Consensus 232 ~~~~~Ll~~le~---~~iilI~at 252 (558)
..++.|+++++. ....+|.+|
T Consensus 180 ~~~~~l~~ii~~R~~~~~ptiitS 203 (248)
T PRK12377 180 NEQVVLNQIIDRRTASMRSVGMLT 203 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEc
Confidence 889999999987 224445555
No 248
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.89 E-value=6.2e-08 Score=91.99 Aligned_cols=187 Identities=21% Similarity=0.329 Sum_probs=123.7
Q ss_pred hcCCCCCCccccccccCCchHHH----HHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHH
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLL----RSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDV 201 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l----~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i 201 (558)
.+.|..+.+++|-+... ..| .++++.-..+++||||..|||||+|++++.+++. ...+.++++..+ ...+
T Consensus 53 ~~~~i~L~~l~Gvd~qk---~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d--l~~L 127 (287)
T COG2607 53 DPDPIDLADLVGVDRQK---EALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED--LATL 127 (287)
T ss_pred CCCCcCHHHHhCchHHH---HHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH--HhhH
Confidence 34456778899977664 333 3333333448999999999999999999999885 335677776533 3345
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCccCCHH-HHHHHHhhHhcC-----cEEEEeccCCCCCCCCcH-------------
Q 008664 202 RDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-QQDSFLPVIEDG-----SIVFIGATTENPSFHLIT------------- 262 (558)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-~~~~Ll~~le~~-----~iilI~att~n~~~~l~~------------- 262 (558)
..+++..+.. ..+-|||+|+.-.=..+ ....|..+||.+ .-++|-+|+ |..+.+..
T Consensus 128 p~l~~~Lr~~----~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS-NRRHLl~e~~~dn~~~~~eih 202 (287)
T COG2607 128 PDLVELLRAR----PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATS-NRRHLLPEDMKDNEGSTGEIH 202 (287)
T ss_pred HHHHHHHhcC----CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEec-CCcccccHhhhhCCCcccccC
Confidence 5566665543 37789999999765443 456677777762 234444443 43322221
Q ss_pred ---------Hhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHH-----HHHHHhCCCCHHHHH
Q 008664 263 ---------PLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAI-----EFLCSNCDGDARVAL 327 (558)
Q Consensus 263 ---------aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al-----~~La~~s~Gd~R~~~ 327 (558)
.|-.|| ..+.|.|++.++-..++...++. .++.++++.+ ++-....+.+-|.+.
T Consensus 203 ~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~-----------~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~ 271 (287)
T COG2607 203 PSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH-----------FGLDISDEELHAEALQWATTRGGRSGRVAW 271 (287)
T ss_pred hhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHHHHhcCCCccHhHH
Confidence 244477 57899999999999999999987 5666666444 444444556777776
Q ss_pred HHHHHHH
Q 008664 328 NALEISA 334 (558)
Q Consensus 328 ~~Le~a~ 334 (558)
..++-+.
T Consensus 272 QF~~~~~ 278 (287)
T COG2607 272 QFIRDLA 278 (287)
T ss_pred HHHHHHH
Confidence 6665544
No 249
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.89 E-value=7.8e-08 Score=92.48 Aligned_cols=184 Identities=23% Similarity=0.335 Sum_probs=124.6
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCc-eEEEEecccccHHHH----------------HHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY-KFVCLSAVTSGVKDV----------------RDAVEDAR 209 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~-~~i~l~~~~~~~~~i----------------~~~~~~~~ 209 (558)
..+...+..+. .-+.++|+.|+|||.+.|++...+..+. ..+.++....+...+ ....+...
T Consensus 41 ~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~ 119 (269)
T COG3267 41 LMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQID 119 (269)
T ss_pred HHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHH
Confidence 45555555543 4689999999999999998877776332 233444433322211 11111111
Q ss_pred Hh---hhhcCC-ceEEEEeCCccCCHHHHHHHHhhHhc-----C--cEEEEeccCCCCC--CCCcHHhhcccce-eeccC
Q 008664 210 KL---RVKSNK-RTVLFVDEVHRFNKSQQDSFLPVIED-----G--SIVFIGATTENPS--FHLITPLLSRCRV-LTLNP 275 (558)
Q Consensus 210 ~~---~~~~~~-~~il~IDEid~l~~~~~~~Ll~~le~-----~--~iilI~att~n~~--~~l~~aL~sR~~~-i~~~~ 275 (558)
+. ....++ +.++++||+|.++.++.+.|..+.+- + .+++||-..-++. .....++..||.+ |.++|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 11 112334 48999999999999988877766543 2 2667765544442 1222456678876 99999
Q ss_pred CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc
Q 008664 276 LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339 (558)
Q Consensus 276 l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
++.++...+|+..++.. +...--++++++..|...+.|-+|...+.+..|...+..
T Consensus 200 ~~~~~t~~yl~~~Le~a--------~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 200 LTEAETGLYLRHRLEGA--------GLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYS 255 (269)
T ss_pred cChHHHHHHHHHHHhcc--------CCCcccCChhHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 99999999999998771 234556789999999999999999999988888777654
No 250
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.85 E-value=3.1e-08 Score=87.64 Aligned_cols=90 Identities=31% Similarity=0.466 Sum_probs=60.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCc-eEEEEecccc---------------------cHHHHHHHHHHHHHhhhhcC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSY-KFVCLSAVTS---------------------GVKDVRDAVEDARKLRVKSN 216 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~-~~i~l~~~~~---------------------~~~~i~~~~~~~~~~~~~~~ 216 (558)
.+++|+||||||||++++.++..+.... .++.+++... +....+.++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL----- 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc-----
Confidence 5799999999999999999999998432 4666665432 222333344443322
Q ss_pred CceEEEEeCCccCCHHHHHHHHh----------hHhcCcEEEEeccC
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLP----------VIEDGSIVFIGATT 253 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~----------~le~~~iilI~att 253 (558)
...+|||||++.+.......... ........+|++++
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 35899999999998766554432 22335667777764
No 251
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=8e-08 Score=93.44 Aligned_cols=190 Identities=23% Similarity=0.287 Sum_probs=124.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC----CCceEEEEecccc-cHHHHHHHHHHHH----------HhhhhcCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA----VSYKFVCLSAVTS-GVKDVRDAVEDAR----------KLRVKSNKRTVLFV 223 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~----~~~~~i~l~~~~~-~~~~i~~~~~~~~----------~~~~~~~~~~il~I 223 (558)
.++||.||+|.||+.||+.|...-. .+..|+++||... |......++...+ ..+.....++++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 5799999999999999999875321 3478999999765 3333333333321 11223457899999
Q ss_pred eCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCC------------------CCCcHHhhcccce--eeccCCC--HHHH
Q 008664 224 DEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPS------------------FHLITPLLSRCRV--LTLNPLK--PHDV 281 (558)
Q Consensus 224 DEid~l~~~~~~~Ll~~le~~~iilI~att~n~~------------------~~l~~aL~sR~~~--i~~~~l~--~~~i 281 (558)
|||..+..+.|..||+.+|+.++.-+|+..+-.+ ..+...|..|+.. +.++-+. .+++
T Consensus 289 deigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 9999999999999999999866554444322111 1233455556654 3444333 2555
Q ss_pred HHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-------CCCCHHHHHHHHHHHHHHhcccCCccchhhhhcccc
Q 008664 282 EILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-------CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354 (558)
Q Consensus 282 ~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-------s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~ 354 (558)
..-|...+...... .+..+.+.-++...-... |.||.|.+-..+.++...+..
T Consensus 369 epnldyelerha~~-----~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~--------------- 428 (531)
T COG4650 369 EPNLDYELERHASL-----TGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADS--------------- 428 (531)
T ss_pred CCCccHHHHHHHHh-----hCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcC---------------
Confidence 44444444332222 246677777766544332 899999999998888887764
Q ss_pred CCCCCCCccccCHHHHHHHHhh
Q 008664 355 SDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 355 ~~~~~~~~~~It~e~v~~~l~~ 376 (558)
..||.+.|++-+.+
T Consensus 429 --------grit~~~ve~ei~r 442 (531)
T COG4650 429 --------GRITLDVVEDEINR 442 (531)
T ss_pred --------CceeHHHHHHHHHH
Confidence 37999999887765
No 252
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.2e-08 Score=103.02 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF 229 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l 229 (558)
..++||.||||+|||+||..+|.... ++|+.+-.... ....++.+|+.+.+. .-.||++|+|+++
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS-----~lsiivvDdiErL 610 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSD--FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS-----PLSIIVVDDIERL 610 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcC--CCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC-----cceEEEEcchhhh
Confidence 36899999999999999999999998 99998865332 344577888887553 6689999999976
Q ss_pred C----------HHHHHHHHhhHhc----CcEEEEeccCCCCCCCCcHHhhccc-ceeeccCCCH-HHHHHHHHHHHHhHh
Q 008664 230 N----------KSQQDSFLPVIED----GSIVFIGATTENPSFHLITPLLSRC-RVLTLNPLKP-HDVEILLKRAVDDVN 293 (558)
Q Consensus 230 ~----------~~~~~~Ll~~le~----~~iilI~att~n~~~~l~~aL~sR~-~~i~~~~l~~-~~i~~iL~~~l~~~~ 293 (558)
- ......|+-++.+ |+-.+|++||......-.-.+..-| ..+.++.++. +++.++|...
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----- 685 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----- 685 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc-----
Confidence 2 3344455555554 5666776676533211111223333 3688888887 6666666542
Q ss_pred cccccccCCcccccChHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Q 008664 294 NGLSKSVGGTRVEVNHDAIEFLCSNC-----DGDARVALNALEISAI 335 (558)
Q Consensus 294 ~~~~~~~~~~~~~i~~~al~~La~~s-----~Gd~R~~~~~Le~a~~ 335 (558)
+ .++++..+.+++.- .=.+..++.+++.+..
T Consensus 686 ----------n-~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 686 ----------N-IFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred ----------c-CCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 1 23445555555442 2246777777777643
No 253
>PRK08116 hypothetical protein; Validated
Probab=98.80 E-value=2.4e-08 Score=99.86 Aligned_cols=118 Identities=16% Similarity=0.274 Sum_probs=70.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHH-----HHHhhhhcCCceEEEEeCC--ccCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVED-----ARKLRVKSNKRTVLFVDEV--HRFN 230 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~il~IDEi--d~l~ 230 (558)
.+++|+|++|+|||+||.+|++.+. ....++.++.... ...++..+.. ............+|+|||+ +..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l-l~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t 193 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL-LNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT 193 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH-HHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence 4699999999999999999999873 1255555554221 1122211110 0011112235679999999 5567
Q ss_pred HHHHHHHHhhHhc---CcEEEEeccCCCCCC---CCcHHhhcc----cceeeccCCC
Q 008664 231 KSQQDSFLPVIED---GSIVFIGATTENPSF---HLITPLLSR----CRVLTLNPLK 277 (558)
Q Consensus 231 ~~~~~~Ll~~le~---~~iilI~att~n~~~---~l~~aL~sR----~~~i~~~~l~ 277 (558)
...+..|+.+++. ....+|++|+..+.. .+...+.+| |..+.|...+
T Consensus 194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 7788889888875 223455555333221 245677777 4556666544
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.72 E-value=4.1e-08 Score=96.43 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=71.0
Q ss_pred hhhcCCCCCCcccccc----ccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEeccccc
Q 008664 125 SERMRPVNINDVVGQD----HLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSG 197 (558)
Q Consensus 125 ~~~~rp~~~~dviGq~----~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~ 197 (558)
.+.++..+|+++.-.. .++ ..+..++... ...+++|+|+||||||+|+.+|++.+.. ...++.++..+.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al---~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l- 138 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNAL---SKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI- 138 (244)
T ss_pred CccccCCccccccCCCchHHHHH---HHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH-
Confidence 3556677888775322 222 4444444332 1258999999999999999999999842 244544443221
Q ss_pred HHHHHHHHHHH----HHhhhhcCCceEEEEeCCccCC--HHHHHHHHhhHhc---CcEEEEecc
Q 008664 198 VKDVRDAVEDA----RKLRVKSNKRTVLFVDEVHRFN--KSQQDSFLPVIED---GSIVFIGAT 252 (558)
Q Consensus 198 ~~~i~~~~~~~----~~~~~~~~~~~il~IDEid~l~--~~~~~~Ll~~le~---~~iilI~at 252 (558)
...++..+... ...........+|+|||++... ....+.|..+++. .....|.+|
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS 202 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT 202 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 11122211100 0111123467899999998764 3345677888876 234445555
No 255
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.70 E-value=3.4e-07 Score=94.98 Aligned_cols=214 Identities=21% Similarity=0.298 Sum_probs=134.9
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHcCC---------C---CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNR---------L---PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~---------~---~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
+.+++.-.---++.|+.++. +.|.-++-.+. + -+++|.|.||+.||.|.+.|.+-.. ...+..
T Consensus 332 ~yekLa~SiAPEIyGheDVK---KaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap--RgvYTT 406 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVK---KALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP--RGVYTT 406 (721)
T ss_pred HHHHHHHhhchhhccchHHH---HHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc--ccceec
Confidence 33443333334688999887 77666665432 1 4799999999999999999998876 444444
Q ss_pred ecccccHHHHHHHHHHHHHh-------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEE---------------EE
Q 008664 192 SAVTSGVKDVRDAVEDARKL-------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV---------------FI 249 (558)
Q Consensus 192 ~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~ii---------------lI 249 (558)
....+|+.-...+...-... ..-....+|..|||+|+|......++..+||..++. ++
T Consensus 407 GrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 407 GRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred CCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhh
Confidence 33333332211221111000 001236789999999999998888999999875432 33
Q ss_pred eccCCCCC-------------CCCcHHhhcccce-------------------------------eeccCCCHHHHHHHH
Q 008664 250 GATTENPS-------------FHLITPLLSRCRV-------------------------------LTLNPLKPHDVEILL 285 (558)
Q Consensus 250 ~att~n~~-------------~~l~~aL~sR~~~-------------------------------i~~~~l~~~~i~~iL 285 (558)
+|. ||. -.++.+|+|||.+ ..|.|++.+-++.++
T Consensus 487 aAA--NPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI 564 (721)
T KOG0482|consen 487 AAA--NPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYI 564 (721)
T ss_pred hhc--CccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHH
Confidence 433 331 2467899999832 235556666555555
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHh--------------CCCCHHHHHHHHHHHHHHhcccCCccchhhhhc
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN--------------CDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~--------------s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~ 351 (558)
.. ++. ....++++.-++|... +--.+|.++.+|....+.+..+
T Consensus 565 ~~-ak~-----------~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLR----------- 621 (721)
T KOG0482|consen 565 SL-AKR-----------KNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLR----------- 621 (721)
T ss_pred HH-Hhh-----------cCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhh-----------
Confidence 43 222 4556677777776542 1347899999999988887753
Q ss_pred cccCCCCCCCccccCHHHHHHHHhh
Q 008664 352 EDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 352 ~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
- ...+..+||.+++.-
T Consensus 622 --l-------s~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 622 --L-------SDSVEEDDVNEALRL 637 (721)
T ss_pred --h-------ccccchhhHHHHHHH
Confidence 1 246888999988864
No 256
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.2e-07 Score=98.80 Aligned_cols=124 Identities=18% Similarity=0.336 Sum_probs=94.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~ 231 (558)
..+||+|+||||||++++++|++++ .++++++|... .+..+...+..++.. .+.|||+-++|-+.-
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg--~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~-----~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELG--LHLLEVDCYELVAESASHTETKLQAIFSRARRC-----SPAVLFLRNLDVLGI 504 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhC--CceEeccHHHHhhcccchhHHHHHHHHHHHhhc-----CceEEEEeccceeee
Confidence 6799999999999999999999999 99999998543 344566677777554 789999999887743
Q ss_pred H--------HHHHHHhhHh--c-----CcEEEEeccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHh
Q 008664 232 S--------QQDSFLPVIE--D-----GSIVFIGATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 232 ~--------~~~~Ll~~le--~-----~~iilI~att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
+ .+..+...+. . .++++|++|+ ....+++.+++-+ ..|.++.+++++..+||+-++..
T Consensus 505 d~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~--s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 505 DQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS--SIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred cCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecc--ccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 2 1222222222 1 5577887774 3447888888877 48899999999999999988755
No 257
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=1.3e-07 Score=83.65 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=61.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC------CceEEEEeccccc-HHHH------------------HHHHHHHHHhhh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV------SYKFVCLSAVTSG-VKDV------------------RDAVEDARKLRV 213 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~------~~~~i~l~~~~~~-~~~i------------------~~~~~~~~~~~~ 213 (558)
..++++||||+|||++++.+++.+.. +..++.+++.... ...+ ..+++......
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l- 83 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL- 83 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH-
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH-
Confidence 56999999999999999999998732 3677777654332 1111 11111111111
Q ss_pred hcCCceEEEEeCCccC-CHHHHHHHHhhHhcCcEEEEeccCC
Q 008664 214 KSNKRTVLFVDEVHRF-NKSQQDSFLPVIEDGSIVFIGATTE 254 (558)
Q Consensus 214 ~~~~~~il~IDEid~l-~~~~~~~Ll~~le~~~iilI~att~ 254 (558)
......+|+|||+|.+ .....+.|..+++...+.+|.+.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1123369999999999 9888888988888877776666654
No 258
>PRK06921 hypothetical protein; Provisional
Probab=98.66 E-value=7.5e-08 Score=96.17 Aligned_cols=85 Identities=25% Similarity=0.361 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCcc-------
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR------- 228 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~------- 228 (558)
..+++|+||||+|||+|+.+|++.+.. ...++.++.... ...++..+..............+|||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l-~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~ 195 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG-FGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPR 195 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH-HHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCcc
Confidence 478999999999999999999998752 355555554321 2223332222221112334678999999954
Q ss_pred CCHHHHHHHHhhHhc
Q 008664 229 FNKSQQDSFLPVIED 243 (558)
Q Consensus 229 l~~~~~~~Ll~~le~ 243 (558)
.+...++.|+.+++.
T Consensus 196 ~t~~~~~~lf~iin~ 210 (266)
T PRK06921 196 ATEWQIEQMYSVLNY 210 (266)
T ss_pred CCHHHHHHHHHHHHH
Confidence 445566778887765
No 259
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=4.1e-07 Score=81.50 Aligned_cols=128 Identities=21% Similarity=0.325 Sum_probs=78.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC--------------------CceEEEEeccc------------------ccHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV--------------------SYKFVCLSAVT------------------SGVKD 200 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~--------------------~~~~i~l~~~~------------------~~~~~ 200 (558)
..++++|+||+||||++.-++..+.. .+.++.+.... ..++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 45899999999999999999988751 12223332110 03344
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCccC---CHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCC
Q 008664 201 VRDAVEDARKLRVKSNKRTVLFVDEVHRF---NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277 (558)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~il~IDEid~l---~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~ 277 (558)
+.++...+.+. .....++++||||.-| ++...+.+-..|+.++. +|++-..+..+.+...+.++..++.| ++
T Consensus 86 le~i~~~al~r--A~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v~v~--lt 160 (179)
T COG1618 86 LEEIAIPALRR--ALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGVYVF--LT 160 (179)
T ss_pred HHHHhHHHHHH--HhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCEEEE--Ec
Confidence 44444333221 1123589999999876 55666777777777665 44443334444566677777776665 55
Q ss_pred HHHHHHHHHHHHHh
Q 008664 278 PHDVEILLKRAVDD 291 (558)
Q Consensus 278 ~~~i~~iL~~~l~~ 291 (558)
.+....++.+++..
T Consensus 161 ~~NR~~i~~~Il~~ 174 (179)
T COG1618 161 PENRNRILNEILSV 174 (179)
T ss_pred cchhhHHHHHHHHH
Confidence 55555666666543
No 260
>PHA00729 NTP-binding motif containing protein
Probab=98.60 E-value=2.3e-07 Score=89.30 Aligned_cols=119 Identities=19% Similarity=0.297 Sum_probs=72.9
Q ss_pred HHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe-----------cccccHHHHHHHHHHHHHhhhhcCC
Q 008664 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS-----------AVTSGVKDVRDAVEDARKLRVKSNK 217 (558)
Q Consensus 149 l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~-----------~~~~~~~~i~~~~~~~~~~~~~~~~ 217 (558)
..+.+..+...+++|+|+|||||||+|.+|++.++ ..+..+. +.-....++...+..+... ..+
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~--~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~---~~~ 82 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF--WKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN---DYR 82 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH--hhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc---CCC
Confidence 33444455567899999999999999999999875 2211111 1111233333333333221 123
Q ss_pred ceEEEEeCCccCCHH-HHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHH
Q 008664 218 RTVLFVDEVHRFNKS-QQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287 (558)
Q Consensus 218 ~~il~IDEid~l~~~-~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~ 287 (558)
..+|+|||+.-.... .+. .+ . + ..++.+.++++||+.++.|.+++.+++...|+.
T Consensus 83 ~dlLIIDd~G~~~~~~~wh-----~~--~--~------~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 83 IPLIIFDDAGIWLSKYVWY-----ED--Y--M------KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CCEEEEeCCchhhcccchh-----hh--c--c------chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 468999997432110 000 00 0 0 123467889999999999999999999998886
No 261
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.59 E-value=1.2e-07 Score=94.90 Aligned_cols=142 Identities=17% Similarity=0.312 Sum_probs=87.2
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCc-eEEEEecccc-cHHHHHHHHHHHHHh------hhhcCCce
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY-KFVCLSAVTS-GVKDVRDAVEDARKL------RVKSNKRT 219 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~-~~i~l~~~~~-~~~~i~~~~~~~~~~------~~~~~~~~ 219 (558)
.+..++..+ .++||+||+|||||++++.+-+.+.... -...++.+.. ....+..+++..... ....+++.
T Consensus 25 ll~~l~~~~--~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~l 102 (272)
T PF12775_consen 25 LLDLLLSNG--RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKL 102 (272)
T ss_dssp HHHHHHHCT--EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEE
T ss_pred HHHHHHHcC--CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEE
Confidence 344445554 6899999999999999998887765332 2333444332 223343333322110 11234677
Q ss_pred EEEEeCCccCCHH------HHHHHHhhHhcC--------------cEEEEeccCCCC-CCCCcHHhhcccceeeccCCCH
Q 008664 220 VLFVDEVHRFNKS------QQDSFLPVIEDG--------------SIVFIGATTENP-SFHLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 220 il~IDEid~l~~~------~~~~Ll~~le~~--------------~iilI~att~n~-~~~l~~aL~sR~~~i~~~~l~~ 278 (558)
|+||||++.-.++ ..+.|.++++.+ .+.+|++++... ...+++.|.++|.++.+.+++.
T Consensus 103 v~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~ 182 (272)
T PF12775_consen 103 VLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSD 182 (272)
T ss_dssp EEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TC
T ss_pred EEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCCh
Confidence 9999999876543 356777888763 256777764311 2357889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 008664 279 HDVEILLKRAVDD 291 (558)
Q Consensus 279 ~~i~~iL~~~l~~ 291 (558)
+.+..|...++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988875
No 262
>PRK08181 transposase; Validated
Probab=98.55 E-value=2.7e-07 Score=92.01 Aligned_cols=99 Identities=18% Similarity=0.321 Sum_probs=57.5
Q ss_pred HHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHH--HHHHhhhhcCCceEEEEeCCc
Q 008664 151 SAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVE--DARKLRVKSNKRTVLFVDEVH 227 (558)
Q Consensus 151 ~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~--~~~~~~~~~~~~~il~IDEid 227 (558)
.|+..+ .+++|+||||||||+|+.++++.+. ....++.++.... ...++.... ..........+..+|+|||++
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L-~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg 177 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL-VQKLQVARRELQLESAIAKLDKFDLLILDDLA 177 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH-HHHHHHHHhCCcHHHHHHHHhcCCEEEEeccc
Confidence 455533 6899999999999999999998763 2244444443111 111111100 000111122467899999998
Q ss_pred cCC--HHHHHHHHhhHhc--CcEEEEecc
Q 008664 228 RFN--KSQQDSFLPVIED--GSIVFIGAT 252 (558)
Q Consensus 228 ~l~--~~~~~~Ll~~le~--~~iilI~at 252 (558)
... ...++.|+++++. ..-.+|.+|
T Consensus 178 ~~~~~~~~~~~Lf~lin~R~~~~s~IiTS 206 (269)
T PRK08181 178 YVTKDQAETSVLFELISARYERRSILITA 206 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 764 4456678888865 222344444
No 263
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.54 E-value=2.1e-06 Score=86.87 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=94.4
Q ss_pred HHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHH--hCCCce---EEEEecccccHHHHHHHHH-------------
Q 008664 147 SLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNS--VAVSYK---FVCLSAVTSGVKDVRDAVE------------- 206 (558)
Q Consensus 147 ~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~--l~~~~~---~i~l~~~~~~~~~i~~~~~------------- 206 (558)
+.+...+.. .....+.|+|++|+|||+||..+++. ....+. ++.+........-...+..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPK 85 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCS
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 677777777 55688999999999999999999988 443332 2333322222222222222
Q ss_pred -------HHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCC
Q 008664 207 -------DARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277 (558)
Q Consensus 207 -------~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~ 277 (558)
..... ...++.+||||+++... ..+.+...+.. ....+|.+| .+. .+..........+.+.+++
T Consensus 86 ~~~~~~~~l~~~--L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTT-R~~--~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 86 DIEELQDQLREL--LKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTT-RDR--SVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SHHHHHHHHHHH--HCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEE-SCG--GGGTTHHSCEEEEECSS--
T ss_pred ccccccccchhh--hccccceeeeeeecccc--cccccccccccccccccccccc-ccc--ccccccccccccccccccc
Confidence 22111 23468999999998554 44334443322 223344433 332 2222222235789999999
Q ss_pred HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 278 ~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
.++..+++.+...... . ....-.++..+.|++.++|.+-.+.-+...+
T Consensus 159 ~~ea~~L~~~~~~~~~-~-------~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 159 EEEALELFKKRAGRKE-S-------ESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp HHHHHHHHHHHHTSHS------------TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cccccccccccccccc-c-------ccccccccccccccccccccccccccccccc
Confidence 9999999998864411 0 1112234667899999999887765554443
No 264
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.50 E-value=3.6e-07 Score=100.61 Aligned_cols=192 Identities=23% Similarity=0.282 Sum_probs=118.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---cH--HHHHHHH-HHH--HHhhhhcCCceEEEEeCCccCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---GV--KDVRDAV-EDA--RKLRVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---~~--~~i~~~~-~~~--~~~~~~~~~~~il~IDEid~l~ 230 (558)
-|+||.|.||||||.|.+.+++.+. ..++ .+...+ |. .-++.-. .++ .........++|+.|||+|.|+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aP--r~vy-tsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAP--RGVY-TSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCC--ceEE-EccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 4799999999999999999999887 3222 222111 10 0001100 010 0000123468899999999999
Q ss_pred HHHHHHHHhhHhcCcEE---------------EEeccCCCCCC-------------CCcHHhhcccceee--ccCCCHHH
Q 008664 231 KSQQDSFLPVIEDGSIV---------------FIGATTENPSF-------------HLITPLLSRCRVLT--LNPLKPHD 280 (558)
Q Consensus 231 ~~~~~~Ll~~le~~~ii---------------lI~att~n~~~-------------~l~~aL~sR~~~i~--~~~l~~~~ 280 (558)
...+.+|...||..++. +++|+ ||.+ .++++|+|||..+. ...++.+.
T Consensus 397 ~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAa--NP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~ 474 (682)
T COG1241 397 EEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAA--NPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEK 474 (682)
T ss_pred hHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhh--CCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccc
Confidence 99999999999986543 34444 4432 36688999995333 33444443
Q ss_pred HHHHHHHHHHhHh------------------------cccccccCC--cccccChHHHHHHHHhC-----CC--------
Q 008664 281 VEILLKRAVDDVN------------------------NGLSKSVGG--TRVEVNHDAIEFLCSNC-----DG-------- 321 (558)
Q Consensus 281 i~~iL~~~l~~~~------------------------~~~~~~~~~--~~~~i~~~al~~La~~s-----~G-------- 321 (558)
-..+..+++..+. +.+. .++. ....+++++.+.|.+++ .+
T Consensus 475 D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI-~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~ 553 (682)
T COG1241 475 DEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYI-SYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRT 553 (682)
T ss_pred hHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHH-HHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCc
Confidence 3444444443321 0000 0111 22578999999888761 11
Q ss_pred ---CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 322 ---DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 322 ---d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.+|++..+++.+-+.|..+ . ...|+.+|+.+++.-
T Consensus 554 ~piT~RqLEsiiRLaeA~Ak~r-----------L---------S~~V~~eD~~eAi~l 591 (682)
T COG1241 554 IPITARQLESIIRLAEAHAKMR-----------L---------SDVVEEEDVDEAIRL 591 (682)
T ss_pred ccccHHHHHHHHHHHHHHHhhh-----------c---------cCCCCHHHHHHHHHH
Confidence 3788888888888877653 1 347999999998874
No 265
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.48 E-value=1.1e-06 Score=94.30 Aligned_cols=116 Identities=25% Similarity=0.343 Sum_probs=75.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc----------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCcc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS----------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~ 228 (558)
-++||+|.||||||.+.+.+++-+.. - +..+.-.. ...+-++++-+.... ..+.+++..|||+|+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pR--g-~yTSGkGsSavGLTayVtrd~dtkqlVLesGAL--VLSD~GiCCIDEFDK 537 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPR--G-VYTSGKGSSAVGLTAYVTKDPDTRQLVLESGAL--VLSDNGICCIDEFDK 537 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCc--c-eeecCCccchhcceeeEEecCccceeeeecCcE--EEcCCceEEchhhhh
Confidence 47999999999999999999998861 1 22221111 111222332222111 234678999999999
Q ss_pred CCHHHHHHHHhhHhcCcE---------------EEEeccCC-----CCC------CCCcHHhhcccce--eeccCCCHH
Q 008664 229 FNKSQQDSFLPVIEDGSI---------------VFIGATTE-----NPS------FHLITPLLSRCRV--LTLNPLKPH 279 (558)
Q Consensus 229 l~~~~~~~Ll~~le~~~i---------------ilI~att~-----n~~------~~l~~aL~sR~~~--i~~~~l~~~ 279 (558)
|+...+..|+++||..++ .++++.+. |+. -.+++.|+|||.. +.|.++++.
T Consensus 538 M~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 538 MSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred hhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 999999999999998442 24444421 111 2467999999963 446677664
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.47 E-value=3.9e-07 Score=93.49 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=65.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHH-HHH---HHHhhhhcCCceEEEEeCCccC--CH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDA-VED---ARKLRVKSNKRTVLFVDEVHRF--NK 231 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~-~~~---~~~~~~~~~~~~il~IDEid~l--~~ 231 (558)
.+++|+||+|||||+|+.+||+.+. ....++.+++... ...++.. +.. ............+|||||++.. +.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l-~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~ 262 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL-IEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITE 262 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH-HHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCH
Confidence 7899999999999999999999874 2245555554322 1112111 000 0000112235689999999654 56
Q ss_pred HHHHHHHhhHhc---CcEEEEeccCCCCC---CCCcHHhhccc
Q 008664 232 SQQDSFLPVIED---GSIVFIGATTENPS---FHLITPLLSRC 268 (558)
Q Consensus 232 ~~~~~Ll~~le~---~~iilI~att~n~~---~~l~~aL~sR~ 268 (558)
..++.|+.+++. ....+|++|+..+. ..+.+.+.||+
T Consensus 263 ~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 677888888876 22344555543332 12345666765
No 267
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.46 E-value=8.7e-06 Score=79.42 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=78.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~L 237 (558)
..-.++||+|||||.+++.+|+.++ ..++.++|+.. +...+..++..+.. .+..+++||+++++.+....+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG--~~~~vfnc~~~~~~~~l~ril~G~~~------~GaW~cfdefnrl~~~vLS~i 104 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG--RFVVVFNCSEQMDYQSLSRILKGLAQ------SGAWLCFDEFNRLSEEVLSVI 104 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT----EEEEETTSSS-HHHHHHHHHHHHH------HT-EEEEETCCCSSHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC--CeEEEecccccccHHHHHHHHHHHhh------cCchhhhhhhhhhhHHHHHHH
Confidence 4567899999999999999999999 99999999776 66677788777655 468999999999998765554
Q ss_pred HhhH-------hcC--c-------------EEEEeccCCC--CCCCCcHHhhcccceeeccCCCHHHHHHHHH
Q 008664 238 LPVI-------EDG--S-------------IVFIGATTEN--PSFHLITPLLSRCRVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 238 l~~l-------e~~--~-------------iilI~att~n--~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~ 286 (558)
-+.+ ..+ . .-++.+.+.. ....+++.|+.-|+.+.+..|+...+.+++-
T Consensus 105 ~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 105 SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHH
Confidence 3333 221 1 1222222211 1247888888889999999888777766654
No 268
>PRK06526 transposase; Provisional
Probab=98.46 E-value=4.5e-07 Score=89.88 Aligned_cols=84 Identities=26% Similarity=0.385 Sum_probs=49.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHH--HHHHhhhhcCCceEEEEeCCccCC--HHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVE--DARKLRVKSNKRTVLFVDEVHRFN--KSQ 233 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~--~~~~~~~~~~~~~il~IDEid~l~--~~~ 233 (558)
.+++|+||||||||+||.+|+..+- ....++.+++... ...+..... ..........+..+|||||++.+. ...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l-~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~ 177 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW-VARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEA 177 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH-HHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHH
Confidence 6899999999999999999998763 1123222222110 111110000 000111122356899999999764 667
Q ss_pred HHHHHhhHhc
Q 008664 234 QDSFLPVIED 243 (558)
Q Consensus 234 ~~~Ll~~le~ 243 (558)
++.|+.+++.
T Consensus 178 ~~~L~~li~~ 187 (254)
T PRK06526 178 ANLFFQLVSS 187 (254)
T ss_pred HHHHHHHHHH
Confidence 7788888854
No 269
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.45 E-value=3.2e-06 Score=83.06 Aligned_cols=169 Identities=21% Similarity=0.324 Sum_probs=105.0
Q ss_pred cccccccCCchHHHHHHHHc----CC---CCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEE-ecc----c-ccHH
Q 008664 136 VVGQDHLLSPNSLLRSAVCS----NR---LPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCL-SAV----T-SGVK 199 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~----~~---~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l-~~~----~-~~~~ 199 (558)
+.||.-+. ..+.+.++. .. +-.+-|+|++||||..+++.||+.+. -+.+++.. .+. . ..++
T Consensus 84 lfGQHla~---~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie 160 (344)
T KOG2170|consen 84 LFGQHLAK---QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE 160 (344)
T ss_pred hhchHHHH---HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH
Confidence 67876554 555555543 22 23567899999999999999999874 11222211 111 1 1233
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc---------CcEEEEeccCCCCC-------------
Q 008664 200 DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED---------GSIVFIGATTENPS------------- 257 (558)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~---------~~iilI~att~n~~------------- 257 (558)
+.+.-+.............+++|+||+|.|.+...+.|.++++. .+-++|+.++....
T Consensus 161 ~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g 240 (344)
T KOG2170|consen 161 DYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNG 240 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHcC
Confidence 33333333322222445789999999999999999999999984 23556665522110
Q ss_pred --------CCCcHHhh-------------ccc-------ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh
Q 008664 258 --------FHLITPLL-------------SRC-------RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH 309 (558)
Q Consensus 258 --------~~l~~aL~-------------sR~-------~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~ 309 (558)
..+.++|. +|. ..|.|-|++...++..++..+.+ ++...+.
T Consensus 241 ~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~-----------rg~~~d~ 309 (344)
T KOG2170|consen 241 KPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRK-----------RGLAPDQ 309 (344)
T ss_pred CCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHh-----------cccccch
Confidence 00111111 111 25789999999999999988877 6677777
Q ss_pred HHHHHHHHh
Q 008664 310 DAIEFLCSN 318 (558)
Q Consensus 310 ~al~~La~~ 318 (558)
+.++.+++.
T Consensus 310 ~~~erva~~ 318 (344)
T KOG2170|consen 310 DFVERVANS 318 (344)
T ss_pred HHHHHHHHh
Confidence 777776654
No 270
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.1e-06 Score=87.16 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHHHH--HH-HhhhhcCCceEEEEeCCcc--CC
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVED--AR-KLRVKSNKRTVLFVDEVHR--FN 230 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~~~--~~-~~~~~~~~~~il~IDEid~--l~ 230 (558)
+..+++|+||||||||+||.+|++.+.. ...++.++. .....+++..+.. .. .......+..+|||||+.. ++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~-~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA-PDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCC
Confidence 4579999999999999999999999852 234443333 2333444444332 11 1111245778999999987 45
Q ss_pred HHHHHHHHhhHhc
Q 008664 231 KSQQDSFLPVIED 243 (558)
Q Consensus 231 ~~~~~~Ll~~le~ 243 (558)
....+.++++|..
T Consensus 183 ~~~~~~~~q~I~~ 195 (254)
T COG1484 183 QEEADLLFQLISR 195 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 5567777777755
No 271
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.40 E-value=7.6e-08 Score=99.32 Aligned_cols=190 Identities=25% Similarity=0.324 Sum_probs=103.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---cH-------HHHHHHHHHHHHhhhhcCCceEEEEeCCcc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---GV-------KDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---~~-------~~i~~~~~~~~~~~~~~~~~~il~IDEid~ 228 (558)
-++||.|.||+|||.|.+.+++... +.+..+.... |. ..-.+..-++... ....++|++|||++.
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~p---r~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGal--vlad~GiccIDe~dk 132 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAP---RSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL--VLADGGICCIDEFDK 132 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-S---SEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HH--HHCTTSEEEECTTTT
T ss_pred cceeeccchhhhHHHHHHHHHhhCC---ceEEECCCCcccCCccceeccccccceeEEeCCch--hcccCceeeeccccc
Confidence 4899999999999999998876655 2233322111 00 0000000000000 223779999999999
Q ss_pred CCHHHHHHHHhhHhcCcE---------------EEEeccCCCCCC-------------CCcHHhhccccee-e-ccCCCH
Q 008664 229 FNKSQQDSFLPVIEDGSI---------------VFIGATTENPSF-------------HLITPLLSRCRVL-T-LNPLKP 278 (558)
Q Consensus 229 l~~~~~~~Ll~~le~~~i---------------ilI~att~n~~~-------------~l~~aL~sR~~~i-~-~~~l~~ 278 (558)
+..+..+.|+..||.+.+ .+++++ ||.. .+.++|+|||..+ . ..+++.
T Consensus 133 ~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~--NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~ 210 (331)
T PF00493_consen 133 MKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA--NPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDE 210 (331)
T ss_dssp --CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE----TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-
T ss_pred ccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH--hhhhhhcchhhhhHHhcccchhhHhhcCEEEEecccccc
Confidence 999999999999998653 356665 4432 4667999999633 3 456665
Q ss_pred HHHHHHHHHHHHhHhccc----------------------ccccC-CcccccChHHHHHHHHhC--------------CC
Q 008664 279 HDVEILLKRAVDDVNNGL----------------------SKSVG-GTRVEVNHDAIEFLCSNC--------------DG 321 (558)
Q Consensus 279 ~~i~~iL~~~l~~~~~~~----------------------~~~~~-~~~~~i~~~al~~La~~s--------------~G 321 (558)
+.-..+..+++....... ...+. .....+++++.+.|.++. .=
T Consensus 211 ~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~i 290 (331)
T PF00493_consen 211 EEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPI 290 (331)
T ss_dssp HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-S
T ss_pred ccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhccccccccccccc
Confidence 444444444443321110 00000 234567888888887651 11
Q ss_pred CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 322 DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 322 d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
.+|.+..+++.+.+.+..+ - ...|+.+|+..++.
T Consensus 291 T~R~LeSLIRLseA~AKl~-------------l-------r~~V~~~Dv~~Ai~ 324 (331)
T PF00493_consen 291 TIRQLESLIRLSEAHAKLR-------------L-------RDEVTEEDVEEAIR 324 (331)
T ss_dssp SCCCCCHHHHHHHHHHHCT-------------T-------SSECSHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHh-------------c-------cCceeHHHHHHHHH
Confidence 3566677777766666652 2 45799999988875
No 272
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.38 E-value=3.7e-06 Score=89.86 Aligned_cols=190 Identities=21% Similarity=0.297 Sum_probs=115.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---cH-------HHHHHHHHHHHHhhhhcCCceEEEEeCCcc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---GV-------KDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---~~-------~~i~~~~~~~~~~~~~~~~~~il~IDEid~ 228 (558)
.+++|.|.||+||+.+.++.+..+. ..++ .+...+ |. ..-.+..-++... ..+..+|..|||+|+
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsP--R~vY-tsGkaSSaAGLTaaVvkD~esgdf~iEAGAL--mLADnGICCIDEFDK 453 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSP--RSVY-TSGKASSAAGLTAAVVKDEESGDFTIEAGAL--MLADNGICCIDEFDK 453 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCC--cceE-ecCcccccccceEEEEecCCCCceeeecCcE--EEccCceEEechhcc
Confidence 5899999999999999999999887 2222 222111 10 0001111112111 334788999999999
Q ss_pred CCHHHHHHHHhhHhcCcEE---------------EEeccCCCCC-------------CCCcHHhhcccc--eeeccCCCH
Q 008664 229 FNKSQQDSFLPVIEDGSIV---------------FIGATTENPS-------------FHLITPLLSRCR--VLTLNPLKP 278 (558)
Q Consensus 229 l~~~~~~~Ll~~le~~~ii---------------lI~att~n~~-------------~~l~~aL~sR~~--~i~~~~l~~ 278 (558)
|+...|.+|+..||..++. +|+|+ ||. -.+.++++|||. .+-+..+++
T Consensus 454 Md~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAA--NPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE 531 (764)
T KOG0480|consen 454 MDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAA--NPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNE 531 (764)
T ss_pred cChHhHHHHHHHHHhheehheecceEEeecchhhhhhhc--CCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCch
Confidence 9999999999999985432 45555 442 246689999994 344556665
Q ss_pred HHHHHHHHHHHHhHhcccccc------------------cCCcccccChHHHHHHHHh----------------CCCCHH
Q 008664 279 HDVEILLKRAVDDVNNGLSKS------------------VGGTRVEVNHDAIEFLCSN----------------CDGDAR 324 (558)
Q Consensus 279 ~~i~~iL~~~l~~~~~~~~~~------------------~~~~~~~i~~~al~~La~~----------------s~Gd~R 324 (558)
..=..+.++++.. .+...+. +..-...++.++-+.|.+. |.=.+|
T Consensus 532 ~~D~~ia~hIld~-h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvR 610 (764)
T KOG0480|consen 532 VVDYAIARHILDL-HRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVR 610 (764)
T ss_pred HHHHHHHHHHHHH-hccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHH
Confidence 4444444444433 1111000 0113445677777776654 122478
Q ss_pred HHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 325 VALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 325 ~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
++..+++..-+.+..+ + ...||.++++++..-
T Consensus 611 qLESlIRLsEA~Ar~~-----------~---------~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 611 QLESLIRLSEARARVE-----------C---------RDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHHHHHHHHHHhhh-----------h---------hhhccHHHHHHHHHH
Confidence 8888887776666541 2 347999999887653
No 273
>PF05729 NACHT: NACHT domain
Probab=98.36 E-value=2.8e-06 Score=78.03 Aligned_cols=130 Identities=19% Similarity=0.323 Sum_probs=74.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCc-------eEEEEecccccH----HHHHHHHHHH--------H---HhhhhcCC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSY-------KFVCLSAVTSGV----KDVRDAVEDA--------R---KLRVKSNK 217 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~-------~~i~l~~~~~~~----~~i~~~~~~~--------~---~~~~~~~~ 217 (558)
.++|+|+||+|||++++.++..+.... .++.+....... ..+...+... . ........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 589999999999999999998875111 122222221111 1122222111 0 01112346
Q ss_pred ceEEEEeCCccCCHHHH--------HHHHhhHhc---CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHH
Q 008664 218 RTVLFVDEVHRFNKSQQ--------DSFLPVIED---GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 218 ~~il~IDEid~l~~~~~--------~~Ll~~le~---~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~ 286 (558)
..+|+||.+|.+..... +.|..++.. ..+.+|.++....... ..........+.+.+++++++..+++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-LRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-HHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 78999999998876322 244455544 3344444443322211 22222233678999999999999999
Q ss_pred HHHH
Q 008664 287 RAVD 290 (558)
Q Consensus 287 ~~l~ 290 (558)
+.+.
T Consensus 161 ~~f~ 164 (166)
T PF05729_consen 161 KYFS 164 (166)
T ss_pred HHhh
Confidence 8764
No 274
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.36 E-value=5.9e-07 Score=84.30 Aligned_cols=88 Identities=23% Similarity=0.378 Sum_probs=51.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc--------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCcc
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS--------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHR 228 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~ 228 (558)
..+++|+||||||||+||.++++++- ....+..++..+. ........+.. ..+..+|||||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~-------l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR-------LKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH-------HHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc-------cccccEecccccce
Confidence 37899999999999999999998763 2244444443211 00011112221 12568999999986
Q ss_pred C--CHHHHHHHHhhHhc--CcEEEEecc
Q 008664 229 F--NKSQQDSFLPVIED--GSIVFIGAT 252 (558)
Q Consensus 229 l--~~~~~~~Ll~~le~--~~iilI~at 252 (558)
. +....+.|+++++. .+-..|++|
T Consensus 120 ~~~~~~~~~~l~~ii~~R~~~~~tIiTS 147 (178)
T PF01695_consen 120 EPLSEWEAELLFEIIDERYERKPTIITS 147 (178)
T ss_dssp S---HHHHHCTHHHHHHHHHT-EEEEEE
T ss_pred eeecccccccchhhhhHhhcccCeEeeC
Confidence 4 45567778888865 222445555
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.35 E-value=1.8e-06 Score=99.47 Aligned_cols=136 Identities=19% Similarity=0.283 Sum_probs=94.8
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc-----------HHHHHHH-HHHHHHhhhhc
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG-----------VKDVRDA-VEDARKLRVKS 215 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~-----------~~~i~~~-~~~~~~~~~~~ 215 (558)
.+.+++.-+ .+++|-|.||+|||+|+.++|+..+ ...+.+|-+..+ +++-.++ +.++ ..+...
T Consensus 1535 rVlRAmqv~--kpilLEGsPGVGKTSlItaLAr~tG--~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~da-pfL~am 1609 (4600)
T COG5271 1535 RVLRAMQVG--KPILLEGSPGVGKTSLITALARKTG--KKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDA-PFLHAM 1609 (4600)
T ss_pred HHHHHHhcC--CceeecCCCCccHHHHHHHHHHHhc--CceEEeeccccchHHHHhCCCCCcccCceeEeccc-HHHHHh
Confidence 333444434 6799999999999999999999999 666666654321 1110111 1111 111234
Q ss_pred CCceEEEEeCCccCCHHHHHHHHhhHhcCc----------------EEEEeccCCCCC------CCCcHHhhcccceeec
Q 008664 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGS----------------IVFIGATTENPS------FHLITPLLSRCRVLTL 273 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~~~~~Ll~~le~~~----------------iilI~att~n~~------~~l~~aL~sR~~~i~~ 273 (558)
.++..|++||+.-.+.+..+.|..+++..+ +.++++- ||. ..+++.+++||.++.+
T Consensus 1610 r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaq--NPq~qggGRKgLPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1610 RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQ--NPQDQGGGRKGLPKSFLNRFSVVKM 1687 (4600)
T ss_pred hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeec--CchhcCCCcccCCHHHhhhhheEEe
Confidence 578899999999999999999988887622 2333333 553 4588999999999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 008664 274 NPLKPHDVEILLKRAVD 290 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~ 290 (558)
..++.+++..|+.+...
T Consensus 1688 d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1688 DGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cccccchHHHHHHhhCC
Confidence 99999999988876543
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=2.3e-05 Score=92.21 Aligned_cols=159 Identities=12% Similarity=0.190 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHH-HH------------------------------HHH
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKD-VR------------------------------DAV 205 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~-i~------------------------------~~~ 205 (558)
..+-++|+||+|.||||++...+...+ ..-.+.+...+..... +. .++
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLF 109 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHH
Confidence 346799999999999999999887654 3334444433322111 01 111
Q ss_pred HHHHHhhhhcCCceEEEEeCCccCCHHH-HHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeecc----CCCH
Q 008664 206 EDARKLRVKSNKRTVLFVDEVHRFNKSQ-QDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLN----PLKP 278 (558)
Q Consensus 206 ~~~~~~~~~~~~~~il~IDEid~l~~~~-~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~----~l~~ 278 (558)
............+.+|||||+|.+.... .+.|..++.. ..+.+|.++-..+...+ ..+.-+-..+.+. +++.
T Consensus 110 ~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~-~~l~~~~~~~~l~~~~l~f~~ 188 (903)
T PRK04841 110 AQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGI-ANLRVRDQLLEIGSQQLAFDH 188 (903)
T ss_pred HHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch-HhHHhcCcceecCHHhCCCCH
Confidence 1111111112467899999999997544 4455555554 44555554432222222 2333233344444 8999
Q ss_pred HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 279 HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 279 ~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
+++..++... .+..++++.+..|.+.++|++-.+.-++.
T Consensus 189 ~e~~~ll~~~--------------~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 189 QEAQQFFDQR--------------LSSPIEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred HHHHHHHHhc--------------cCCCCCHHHHHHHHHHhCChHHHHHHHHH
Confidence 9999988764 35568999999999999999876654443
No 277
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.28 E-value=3e-06 Score=78.87 Aligned_cols=163 Identities=12% Similarity=0.227 Sum_probs=106.4
Q ss_pred EEEEcCCCchHHHHHHHHHHH-hCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCC----ccCCHHHHH
Q 008664 161 IIFWGPPGTGKTTLAKAIVNS-VAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEV----HRFNKSQQD 235 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~-l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEi----d~l~~~~~~ 235 (558)
++|||+-=.-+...++.|.+. .......+.+............++..+... ...+...+|+|.+. +.......+
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~-slF~~~klvii~~~~~l~~~~~~~~~~ 79 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDELLEELQSP-SLFGDKKLVIIKNAPFLKDKLKKKEIK 79 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH-HTTTSTTT-TSSSSEEEEEEE-----TT-S-TTHHH
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCcHHHHHHHHhcC-CccCCCeEEEEecCccccccccHHHHH
Confidence 478888777777777777777 443344444444444444445555555443 36778899999999 456667788
Q ss_pred HHHhhHhc--CcEEEEeccCCCC--CCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHH
Q 008664 236 SFLPVIED--GSIVFIGATTENP--SFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDA 311 (558)
Q Consensus 236 ~Ll~~le~--~~iilI~att~n~--~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~a 311 (558)
.|..++++ ...++|+.+..+. ..++.+.+...+.++.+.+++..++..+++..+.+ .++.+++++
T Consensus 80 ~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~g~~i~~~a 148 (172)
T PF06144_consen 80 ALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKK-----------NGLKIDPDA 148 (172)
T ss_dssp HHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHH-----------TT-EE-HHH
T ss_pred HHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHH-----------cCCCCCHHH
Confidence 88888877 3444444333221 12344566667789999999999999999999988 899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Q 008664 312 IEFLCSNCDGDARVALNALEISAI 335 (558)
Q Consensus 312 l~~La~~s~Gd~R~~~~~Le~a~~ 335 (558)
+++|++..++|++.+.+.|+.++.
T Consensus 149 ~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 149 AQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999999998763
No 278
>PF14516 AAA_35: AAA-like domain
Probab=98.27 E-value=0.00025 Score=73.35 Aligned_cols=170 Identities=19% Similarity=0.281 Sum_probs=102.1
Q ss_pred HHHHHHHHc-CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccccc------HHH------------------
Q 008664 147 SLLRSAVCS-NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSG------VKD------------------ 200 (558)
Q Consensus 147 ~~l~~~i~~-~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~------~~~------------------ 200 (558)
..+...+.. + ..+.|.||..+|||++...+.+.+. ..+..+.++....+ .+.
T Consensus 21 ~~~~~~i~~~G--~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~ 98 (331)
T PF14516_consen 21 QECYQEIVQPG--SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEK 98 (331)
T ss_pred HHHHHHHhcCC--CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChh
Confidence 455555554 4 5689999999999999999887774 33566665543321 110
Q ss_pred HH--------------HHHHHHHHhhhhcCCceEEEEeCCccCCH--HHHHHHH----hhHhc-------CcEEEEeccC
Q 008664 201 VR--------------DAVEDARKLRVKSNKRTVLFVDEVHRFNK--SQQDSFL----PVIED-------GSIVFIGATT 253 (558)
Q Consensus 201 i~--------------~~~~~~~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll----~~le~-------~~iilI~att 253 (558)
+. ..+++. ......++-||+|||||.+.. ...+.|+ .+.+. .++++|++..
T Consensus 99 l~~~w~~~~~~~~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 99 LDEYWDEEIGSKISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred HHHHHHHhcCChhhHHHHHHHH--HHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 00 111111 011234788999999998864 2223333 33343 2344554443
Q ss_pred CCCCC--CCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 254 ENPSF--HLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 254 ~n~~~--~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
..... .....-.+-+..+.+++++.+|+..++.+. +..+++..++.|...++|-+--...++.
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~---------------~~~~~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY---------------GLEFSQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh---------------hccCCHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22221 111111133467899999999999887653 4457777899999999999976666666
Q ss_pred HHHH
Q 008664 332 ISAI 335 (558)
Q Consensus 332 ~a~~ 335 (558)
.+..
T Consensus 242 ~l~~ 245 (331)
T PF14516_consen 242 LLVE 245 (331)
T ss_pred HHHH
Confidence 5543
No 279
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.26 E-value=2.1e-06 Score=87.40 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=53.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHH--HHhhhhcCCceEEEEeCCccC--CHH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDA--RKLRVKSNKRTVLFVDEVHRF--NKS 232 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~--~~~~~~~~~~~il~IDEid~l--~~~ 232 (558)
..+++|+||+|||||+|+.++++.+. ....+..+.... -..+++..+... ........+..+|+|||+..- +..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~-l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~ 234 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE-FIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSW 234 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH-HHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHH
Confidence 46899999999999999999999984 113333333221 112222222110 111112346789999999754 444
Q ss_pred HHHHHHh-hHhc---CcEEEEecc
Q 008664 233 QQDSFLP-VIED---GSIVFIGAT 252 (558)
Q Consensus 233 ~~~~Ll~-~le~---~~iilI~at 252 (558)
..+.++. +++. .....|++|
T Consensus 235 ~~~~ll~~Il~~R~~~~~~ti~TS 258 (306)
T PRK08939 235 VRDEVLGVILQYRMQEELPTFFTS 258 (306)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5544544 4443 334445545
No 280
>PRK09183 transposase/IS protein; Provisional
Probab=98.26 E-value=1.8e-06 Score=86.09 Aligned_cols=84 Identities=24% Similarity=0.325 Sum_probs=49.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHH--HHHhh-hhcCCceEEEEeCCcc--CCHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVED--ARKLR-VKSNKRTVLFVDEVHR--FNKS 232 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~--~~~~~-~~~~~~~il~IDEid~--l~~~ 232 (558)
.+++|+||||||||+|+.+++.... ....+..+++.... ..+...... ..... .......+++|||++. ++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~-~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL-LQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH-HHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence 6799999999999999999987642 12344444432111 011110000 00000 0123567999999987 4566
Q ss_pred HHHHHHhhHhc
Q 008664 233 QQDSFLPVIED 243 (558)
Q Consensus 233 ~~~~Ll~~le~ 243 (558)
.++.|+++++.
T Consensus 182 ~~~~lf~li~~ 192 (259)
T PRK09183 182 EANLFFQVIAK 192 (259)
T ss_pred HHHHHHHHHHH
Confidence 67788888854
No 281
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.24 E-value=8.8e-05 Score=76.43 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=74.3
Q ss_pred cCCceEEEEeCCccCCHHHHHHHHhhHhc----CcEEEEeccCCCC--------CC-----CCcHHhhccc-c-eeeccC
Q 008664 215 SNKRTVLFVDEVHRFNKSQQDSFLPVIED----GSIVFIGATTENP--------SF-----HLITPLLSRC-R-VLTLNP 275 (558)
Q Consensus 215 ~~~~~il~IDEid~l~~~~~~~Ll~~le~----~~iilI~att~n~--------~~-----~l~~aL~sR~-~-~i~~~~ 275 (558)
...+-||||||+|++.++....++..+.. ..+++|.+..... +. ......+.++ + .+.+++
T Consensus 170 ~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred CCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 34678999999999999877766666643 6777777763211 00 1223444444 3 588999
Q ss_pred CCHHHHHHHHHHHHHhHhcccccccCCccccc----------ChHHHHHHHH---hCCCCHHHHHHHHHHHHHHh
Q 008664 276 LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV----------NHDAIEFLCS---NCDGDARVALNALEISAITA 337 (558)
Q Consensus 276 l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i----------~~~al~~La~---~s~Gd~R~~~~~Le~a~~~a 337 (558)
++..++..++...+.......... ...-.+ ....+..+.. ...+++|.+.+.+.......
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~~~ 322 (325)
T PF07693_consen 250 PSPSDLERYLNELLESLESETNES--DDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSLLY 322 (325)
T ss_pred CCHHHHHHHHHHHHHHhhhccccc--cchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHh
Confidence 999999999988876643332100 000000 1223333333 25689999999988776543
No 282
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.24 E-value=1.7e-05 Score=82.68 Aligned_cols=83 Identities=24% Similarity=0.220 Sum_probs=52.4
Q ss_pred HHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHHHH-hhhhcCCceEEEEeCCcc
Q 008664 151 SAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDARK-LRVKSNKRTVLFVDEVHR 228 (558)
Q Consensus 151 ~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~il~IDEid~ 228 (558)
.+++.+ .|+++.||+|||||+++.+++...- ....+ -....++.+... .....+...+|+|||+..
T Consensus 204 ~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG~f----------~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgy 271 (449)
T TIGR02688 204 PLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISGGT----------ITVAKLFYNISTRQIGLVGRWDVVAFDEVAT 271 (449)
T ss_pred HHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcCCc----------CcHHHHHHHHHHHHHhhhccCCEEEEEcCCC
Confidence 344443 7899999999999999999887721 00111 112222222221 122345789999999998
Q ss_pred CC----HHHHHHHHhhHhcCc
Q 008664 229 FN----KSQQDSFLPVIEDGS 245 (558)
Q Consensus 229 l~----~~~~~~Ll~~le~~~ 245 (558)
+. ++....|..+|+.|.
T Consensus 272 lp~~~~~~~v~imK~yMesg~ 292 (449)
T TIGR02688 272 LKFAKPKELIGILKNYMESGS 292 (449)
T ss_pred CcCCchHHHHHHHHHHHHhCc
Confidence 54 345677888888743
No 283
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.18 E-value=1.3e-06 Score=82.10 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=35.5
Q ss_pred ccccccccCCchHHHHHHHH---cCCCCeEEEEcCCCchHHHHHHHHHHHhCCC-ceEEEEecccc
Q 008664 135 DVVGQDHLLSPNSLLRSAVC---SNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-YKFVCLSAVTS 196 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~---~~~~~~~LL~GppGtGKTtLa~~la~~l~~~-~~~i~l~~~~~ 196 (558)
+++|++..+ +.+...+. .+..++++|+|++|+|||++++.+...+... ..++.+++...
T Consensus 1 ~fvgR~~e~---~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEI---ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --TT-HHHH---HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCCHHHHH---HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 367888887 77877773 2334789999999999999999988877511 11555555443
No 284
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.15 E-value=2.1e-06 Score=79.62 Aligned_cols=64 Identities=8% Similarity=0.278 Sum_probs=38.0
Q ss_pred CceEEEEeCCccC---CHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcc--cceeeccCCCHHHH
Q 008664 217 KRTVLFVDEVHRF---NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSR--CRVLTLNPLKPHDV 281 (558)
Q Consensus 217 ~~~il~IDEid~l---~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR--~~~i~~~~l~~~~i 281 (558)
...+++||||..| ++..++.+..+++.. ..+|++-.......+...+.+| +.++.+.+-+.+.+
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s~-~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDSN-KPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCTT-SEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcCC-CcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhH
Confidence 5679999999876 567788899999844 3344444333244677888888 67787776665444
No 285
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.13 E-value=1.9e-05 Score=84.11 Aligned_cols=129 Identities=23% Similarity=0.371 Sum_probs=76.3
Q ss_pred ccccccccCCchHHHHHHHHcCCC------------CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec--ccccHH-
Q 008664 135 DVVGQDHLLSPNSLLRSAVCSNRL------------PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA--VTSGVK- 199 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~~~~------------~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~--~~~~~~- 199 (558)
.|.|+..++ ..+.-++-.|-. -++||+|.|||||+.+.+.+++... ..++...- +..|..
T Consensus 450 sIyGh~~VK---~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~--RAV~tTGqGASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVK---RAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP--RAVFTTGQGASAVGLTA 524 (854)
T ss_pred hhhchHHHH---HHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc--ceeEeccCCccccceeE
Confidence 366776665 555544444321 4799999999999999999998876 44433221 111100
Q ss_pred ----H--HHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc---------------EEEEeccCC----
Q 008664 200 ----D--VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS---------------IVFIGATTE---- 254 (558)
Q Consensus 200 ----~--i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~---------------iilI~att~---- 254 (558)
+ .++..-++... -...++|.+|||+|.|+......+...||... ..+|++.+.
T Consensus 525 ~v~KdPvtrEWTLEaGAL--VLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGR 602 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGAL--VLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGR 602 (854)
T ss_pred EEeeCCccceeeeccCeE--EEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCc
Confidence 0 11111111111 22367899999999998776666777776532 345666632
Q ss_pred -CCC------CCCcHHhhcccce
Q 008664 255 -NPS------FHLITPLLSRCRV 270 (558)
Q Consensus 255 -n~~------~~l~~aL~sR~~~ 270 (558)
|+. -.+..+++|||.+
T Consensus 603 Y~~s~tFaqNV~ltePIlSRFDi 625 (854)
T KOG0477|consen 603 YNPSLTFAQNVDLTEPILSRFDI 625 (854)
T ss_pred cCCccchhhccccccchhhhcce
Confidence 111 1466789999954
No 286
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.07 E-value=2e-05 Score=75.25 Aligned_cols=104 Identities=24% Similarity=0.402 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHH----HHHh---hhh-----
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVED----ARKL---RVK----- 214 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~----~~~~---~~~----- 214 (558)
.+..++..+ -+..++.||||||||++++.+.+.+. ....++-+..+......+++-... .... ...
T Consensus 9 a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 9 AVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp HHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCS
T ss_pred HHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccc
Confidence 344444433 35688999999999999999887774 225666665554444444333110 0000 000
Q ss_pred ---cCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEecc
Q 008664 215 ---SNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGAT 252 (558)
Q Consensus 215 ---~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~at 252 (558)
..+..+|||||+..++......|+..+.. .+++++|-.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCc
Confidence 23457999999999999999999999887 456666643
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.07 E-value=4.1e-05 Score=81.08 Aligned_cols=132 Identities=19% Similarity=0.301 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--cHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--GVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
..+.+.+..... .++|+||.+|||||+++.+.+... ..++.++-.+. ....+.+.+....... ..+...+|+|
T Consensus 27 ~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~--~~~iy~~~~d~~~~~~~l~d~~~~~~~~~--~~~~~yifLD 101 (398)
T COG1373 27 PRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL--EEIIYINFDDLRLDRIELLDLLRAYIELK--EREKSYIFLD 101 (398)
T ss_pred HHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC--cceEEEEecchhcchhhHHHHHHHHHHhh--ccCCceEEEe
Confidence 333344333332 799999999999999999998886 32444443333 2223333333333321 1155799999
Q ss_pred CCccCCHHHHHHHHhhHhcCc--EEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHH
Q 008664 225 EVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEIL 284 (558)
Q Consensus 225 Eid~l~~~~~~~Ll~~le~~~--iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~i 284 (558)
|||.+.. -+..+..+.+.+. +++.+++...........|..|...+.+.|++-.+...+
T Consensus 102 EIq~v~~-W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 102 EIQNVPD-WERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred cccCchh-HHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9998754 4556666667765 566665554555566777888989999999999887653
No 288
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.07 E-value=5.6e-06 Score=56.22 Aligned_cols=32 Identities=44% Similarity=0.792 Sum_probs=29.7
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHH
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWI 35 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~ 35 (558)
+++|.+|||+.+.|++||.++++ ++++|++||
T Consensus 6 v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 6 VQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 78999999999999999999999 899999997
No 289
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.06 E-value=0.00033 Score=81.06 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=78.1
Q ss_pred CCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCC-------CCcHHhhc--ccceeeccCCCHHHHHHHHH
Q 008664 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSF-------HLITPLLS--RCRVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~-------~l~~aL~s--R~~~i~~~~l~~~~i~~iL~ 286 (558)
.++-|+|+||+|+.+....+.|-.+|+.-. |++...|+.. .+.....+ +...|.+.|++..+...++.
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~---~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~ 229 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIA---IGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVA 229 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcc---hhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHH
Confidence 358899999999999999888888887754 2222222221 12222223 23689999999999999999
Q ss_pred HHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 287 RAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
..+.. ......+..+.+.+.+.||+-.+...++.+...
T Consensus 230 ~~l~~------------~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 230 ATLGC------------TKLLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred HHhCC------------cccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 88744 345667789999999999999999988887764
No 290
>PRK04296 thymidine kinase; Provisional
Probab=98.05 E-value=3.5e-05 Score=73.17 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=53.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecc-c--c---------c-------HHHHHHHHHHHHHhhhhcCCce
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAV-T--S---------G-------VKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~-~--~---------~-------~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
..+++||+|+||||++..++..+. ....++.+... + . + .....+++..... ..+...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---~~~~~d 80 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---EGEKID 80 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---hCCCCC
Confidence 478999999999999988887762 22333333221 1 0 1 0112233333222 223568
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEEEEe
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVFIG 250 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~iilI~ 250 (558)
+|+|||++.++.++...|+..+....+.+|+
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~~~g~~vi~ 111 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVIC 111 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9999999999888777777776554433333
No 291
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.03 E-value=6.9e-06 Score=55.77 Aligned_cols=34 Identities=44% Similarity=0.712 Sum_probs=31.7
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHH
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWIL 36 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~ 36 (558)
.+++|.+|||+.+.+++||.++++ .+++|++|||
T Consensus 4 ~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 4 KIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 478999999999999999999999 5999999986
No 292
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.02 E-value=1.9e-05 Score=78.77 Aligned_cols=142 Identities=23% Similarity=0.313 Sum_probs=85.7
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHH-H--HhCCCceEEEEecccccH--------------------------
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV-N--SVAVSYKFVCLSAVTSGV-------------------------- 198 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la-~--~l~~~~~~i~l~~~~~~~-------------------------- 198 (558)
.+++-+..+..+++++.||.|+|||.+..... . +.+.+.-.+.+|+.-...
T Consensus 39 ~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsft 118 (408)
T KOG2228|consen 39 LLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFT 118 (408)
T ss_pred HHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccc
Confidence 34444445677999999999999999765433 3 445344455555533220
Q ss_pred HHHHHHHHHHHHhhhhcCCc-eEEEEeCCccCCH-HHHHHHHhhHhc-----CcEEEEeccCCC-CCCCCcHHhhccc--
Q 008664 199 KDVRDAVEDARKLRVKSNKR-TVLFVDEVHRFNK-SQQDSFLPVIED-----GSIVFIGATTEN-PSFHLITPLLSRC-- 268 (558)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~-~il~IDEid~l~~-~~~~~Ll~~le~-----~~iilI~att~n-~~~~l~~aL~sR~-- 268 (558)
+.+..++.-.... ....+. .|.++||+|.+.+ ..|-.|.+++|- ..+.+||.||.- -...+.+...|||
T Consensus 119 e~l~~lL~~L~~~-~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFsh 197 (408)
T KOG2228|consen 119 ENLSKLLEALKKG-DETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSH 197 (408)
T ss_pred hhHHHHHHHHhcC-CCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhccc
Confidence 1111111111111 112233 4566679997754 556677777754 458888888753 2345567888999
Q ss_pred c-eeeccCCCHHHHHHHHHHHHH
Q 008664 269 R-VLTLNPLKPHDVEILLKRAVD 290 (558)
Q Consensus 269 ~-~i~~~~l~~~~i~~iL~~~l~ 290 (558)
+ ++-+++++-++...+++..+.
T Consensus 198 r~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 198 RVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ceeeccCCCChHHHHHHHHHHhc
Confidence 3 455666777999999888763
No 293
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.02 E-value=8.7e-06 Score=55.64 Aligned_cols=35 Identities=49% Similarity=0.760 Sum_probs=32.7
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHh
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILS 37 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~ 37 (558)
.+++|.+|||+.+.+++||.++++ ++++|++||++
T Consensus 4 ~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~~ 38 (38)
T cd00194 4 KLEQLLEMGFSREEARKALRATNN-NVERAVEWLLE 38 (38)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence 478999999999999999999999 79999999985
No 294
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.95 E-value=8.7e-05 Score=74.06 Aligned_cols=141 Identities=16% Similarity=0.303 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
..+.+.+...+ +++||.|.+|+||+++++..+--.+ ..++.+..... +..++++-++.+-......+++.+++|+|
T Consensus 21 ~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~~--~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d 97 (268)
T PF12780_consen 21 ARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFICG--YEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTD 97 (268)
T ss_dssp HHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHTT--EEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEEC
T ss_pred HHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHhc--cceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecC
Confidence 56666666543 7899999999999999998888777 78877765433 45555555544433222445788999999
Q ss_pred CccCCHHHHHHHHhhHhc--------------------------------------------Cc--EEEEeccCCCCCCC
Q 008664 226 VHRFNKSQQDSFLPVIED--------------------------------------------GS--IVFIGATTENPSFH 259 (558)
Q Consensus 226 id~l~~~~~~~Ll~~le~--------------------------------------------~~--iilI~att~n~~~~ 259 (558)
-+-......+.+..+|.. .. ++++...+ .+.+.
T Consensus 98 ~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~-~~~~r 176 (268)
T PF12780_consen 98 SQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPV-GPNFR 176 (268)
T ss_dssp CCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTT-TTCCC
T ss_pred cccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCC-CchHH
Confidence 875543222211111111 11 33333322 22221
Q ss_pred ----CcHHhhcccceeeccCCCHHHHHHHHHHHHHh
Q 008664 260 ----LITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 260 ----l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
-.|+|.++|.+..|.+.+.+.+..+..+.+..
T Consensus 177 ~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 177 DRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 23788899999999999999999998887755
No 295
>PRK04132 replication factor C small subunit; Provisional
Probab=97.94 E-value=3.4e-06 Score=95.69 Aligned_cols=51 Identities=37% Similarity=0.782 Sum_probs=47.5
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHH
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTT 173 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTt 173 (558)
...||+++|||.+|+|++||++++ +.|+.++..++.++++|+||||+||+.
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~---~~Lk~~i~~~~i~h~l~~g~~g~~~cl 55 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIV---KRLKHYVKTGSMPHLLFAGPPGVGKCL 55 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHH---HHHHHHHHcCCCCeEEEECCCCCCccc
Confidence 346999999999999999999998 899999999999999999999999964
No 296
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.91 E-value=8.2e-05 Score=86.57 Aligned_cols=124 Identities=17% Similarity=0.273 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---------------cHHHH-HHHHHHHHHhhhhcCCceEE
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---------------GVKDV-RDAVEDARKLRVKSNKRTVL 221 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---------------~~~~i-~~~~~~~~~~~~~~~~~~il 221 (558)
..++||-||+.+|||+++..+|+..+ ..|+.+|.-.. |.-.+ ..++-++- .++-.|
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tg--hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl------R~GyWI 959 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETG--HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL------RRGYWI 959 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhC--ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHH------hcCcEE
Confidence 36799999999999999999999999 89999986332 11111 12222322 266799
Q ss_pred EEeCCccCCHHHHHHHHhhHhcCc---------E------EEEeccCCCCC------CCCcHHhhcccceeeccCCCHHH
Q 008664 222 FVDEVHRFNKSQQDSFLPVIEDGS---------I------VFIGATTENPS------FHLITPLLSRCRVLTLNPLKPHD 280 (558)
Q Consensus 222 ~IDEid~l~~~~~~~Ll~~le~~~---------i------ilI~att~n~~------~~l~~aL~sR~~~i~~~~l~~~~ 280 (558)
++||..-...+..++|.+++++.+ + ..++||. ||+ ..+..++++||.-++|...++++
T Consensus 960 VLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ-Nppg~YgGRK~LSrAFRNRFlE~hFddipedE 1038 (4600)
T COG5271 960 VLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ-NPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDE 1038 (4600)
T ss_pred EeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec-CCCccccchHHHHHHHHhhhHhhhcccCcHHH
Confidence 999999999999999999997732 1 1345544 543 34678999999999999999999
Q ss_pred HHHHHHHHHH
Q 008664 281 VEILLKRAVD 290 (558)
Q Consensus 281 i~~iL~~~l~ 290 (558)
+..||+..|+
T Consensus 1039 le~ILh~rc~ 1048 (4600)
T COG5271 1039 LEEILHGRCE 1048 (4600)
T ss_pred HHHHHhccCc
Confidence 9999997664
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=7.1e-05 Score=68.23 Aligned_cols=23 Identities=48% Similarity=0.842 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++|+||||+|||+++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988874
No 298
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.83 E-value=0.00029 Score=84.81 Aligned_cols=173 Identities=13% Similarity=0.211 Sum_probs=99.5
Q ss_pred CCCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceE-EEEec-----cc--c---
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKF-VCLSA-----VT--S--- 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~-i~l~~-----~~--~--- 196 (558)
+..+++++|.+..+ +.+..++.. .....+-|+|++|+||||||+++++.+...+.. +.++. .. .
T Consensus 180 ~~~~~~~vG~~~~l---~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 180 SNDFEDFVGIEDHI---AKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred CcccccccchHHHH---HHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccc
Confidence 45678899998877 777777643 334678999999999999999998887522211 11111 00 0
Q ss_pred -----c--HHHHHHHHHH--------------HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHh---cCcEEEEecc
Q 008664 197 -----G--VKDVRDAVED--------------ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE---DGSIVFIGAT 252 (558)
Q Consensus 197 -----~--~~~i~~~~~~--------------~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le---~~~iilI~at 252 (558)
. ..-.++++.+ .+.. ...++.+|++||++. ..+.+.|....+ .|..++| +
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~--L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIi-T- 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEER--LKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIV-I- 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHH--HhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEE-E-
Confidence 0 0000111111 1111 234678999999974 345555554433 2444433 3
Q ss_pred CCCCCCCCcHHhhcc--c-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCccccc--ChHHHHHHHHhCCCCHHHHH
Q 008664 253 TENPSFHLITPLLSR--C-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV--NHDAIEFLCSNCDGDARVAL 327 (558)
Q Consensus 253 t~n~~~~l~~aL~sR--~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i--~~~al~~La~~s~Gd~R~~~ 327 (558)
|.+. .+... + .++.+..++.++..+++.+.+-. ....- -.+....+++.++|-+-.+.
T Consensus 331 Trd~------~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~-----------~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 331 TKDK------HFLRAHGIDHIYEVCLPSNELALEMFCRSAFK-----------KNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred eCcH------HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC-----------CCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 3332 22221 2 57889999999988888876532 11111 12445667888999875544
Q ss_pred H
Q 008664 328 N 328 (558)
Q Consensus 328 ~ 328 (558)
-
T Consensus 394 v 394 (1153)
T PLN03210 394 V 394 (1153)
T ss_pred H
Confidence 3
No 299
>PRK10536 hypothetical protein; Provisional
Probab=97.83 E-value=0.00015 Score=71.07 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHH-h-CCCceEEEEecccc----------c-H-HH-------HHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS-V-AVSYKFVCLSAVTS----------G-V-KD-------VRDAV 205 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~-l-~~~~~~i~l~~~~~----------~-~-~~-------i~~~~ 205 (558)
..+..++... ..+++.||+|||||+||.+++.. + ...+..+.+..... | . +. +-+.+
T Consensus 65 ~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L 142 (262)
T PRK10536 65 AHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVL 142 (262)
T ss_pred HHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHH
Confidence 4455566554 57999999999999999999985 3 33344444432221 1 0 00 11111
Q ss_pred HHH------HHh----------------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccC
Q 008664 206 EDA------RKL----------------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATT 253 (558)
Q Consensus 206 ~~~------~~~----------------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att 253 (558)
... ... ....-...+|||||++.++..+...++.-+.. .+++++|-.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 143 VRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDIT 213 (262)
T ss_pred HHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChh
Confidence 110 000 00001457999999999999988888887765 4566666543
No 300
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=0.0003 Score=71.59 Aligned_cols=182 Identities=17% Similarity=0.300 Sum_probs=104.4
Q ss_pred ccccccccCCchHHHHHHHHcCC--CC-eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---------------
Q 008664 135 DVVGQDHLLSPNSLLRSAVCSNR--LP-SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--------------- 196 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~~~--~~-~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--------------- 196 (558)
.|.+++..+ ..+...+.... .+ +++|+|-.|||||.+.+.+-+.++ .+.+.+++.+.
T Consensus 7 ~v~~Re~qi---~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQI---RRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHH---HHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--CcceeeehHHhccHHHHHHHHHHHhc
Confidence 355666666 67777765543 34 459999999999999999999997 77777776432
Q ss_pred -----c------HHHHHHHHHHHHHhhhh--cCCceEEEEeCCccCCH---HHHHHHH---hhHhcCcEEEEeccCCCCC
Q 008664 197 -----G------VKDVRDAVEDARKLRVK--SNKRTVLFVDEVHRFNK---SQQDSFL---PVIEDGSIVFIGATTENPS 257 (558)
Q Consensus 197 -----~------~~~i~~~~~~~~~~~~~--~~~~~il~IDEid~l~~---~~~~~Ll---~~le~~~iilI~att~n~~ 257 (558)
+ .+.+...+....+.... .+....|++|.+|.+.. .....|+ .++....+.+|.+.+.-+.
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 0 01122222222221111 13467899999998752 2222222 2334455555554432221
Q ss_pred CCCcHHhhcc-----cceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHH----HHhCCCCHHHHHH
Q 008664 258 FHLITPLLSR-----CRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFL----CSNCDGDARVALN 328 (558)
Q Consensus 258 ~~l~~aL~sR-----~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~L----a~~s~Gd~R~~~~ 328 (558)
....+ .-++.|+.++.+++..|+.+--.. .....+=..-+..+ ...|. |++.+..
T Consensus 162 -----~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~----------~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~ 225 (438)
T KOG2543|consen 162 -----QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG----------KRKLDVYAQFLHVLLQVFYMACR-DVNELRS 225 (438)
T ss_pred -----HhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc----------ccchHHHHHHHHHHHHHHHHHhC-CHHHHHH
Confidence 11221 147889999999999998864210 01111112222222 33354 9999888
Q ss_pred HHHHHHHHh
Q 008664 329 ALEISAITA 337 (558)
Q Consensus 329 ~Le~a~~~a 337 (558)
++..+...-
T Consensus 226 ~~~~~wpky 234 (438)
T KOG2543|consen 226 LISLAWPKY 234 (438)
T ss_pred HHHHHHHhh
Confidence 888776553
No 301
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.80 E-value=2.9e-05 Score=66.45 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=46.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCC------ceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVS------YKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS-- 232 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~------~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~-- 232 (558)
++|+||||+|||++++.|++.+... ..++..+.. . +.+. ......++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~---~----~~w~-------gY~~q~vvi~DD~~~~~~~~~ 66 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG---D----KFWD-------GYQGQPVVIIDDFGQDNDGYN 66 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc---c----chhh-------ccCCCcEEEEeecCccccccc
Confidence 5799999999999999999887611 122221111 1 1111 1225679999999987754
Q ss_pred --HHHHHHhhHhcCcE
Q 008664 233 --QQDSFLPVIEDGSI 246 (558)
Q Consensus 233 --~~~~Ll~~le~~~i 246 (558)
....|++++....+
T Consensus 67 ~~~~~~l~~l~s~~~~ 82 (107)
T PF00910_consen 67 YSDESELIRLISSNPF 82 (107)
T ss_pred hHHHHHHHHHHhcCCc
Confidence 56677777765433
No 302
>PHA02624 large T antigen; Provisional
Probab=97.77 E-value=0.00011 Score=79.68 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=67.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-------
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK------- 231 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~------- 231 (558)
+.++|+||||||||+++.+|++.++ ...+.+|+......-.-+.+ ....+++||++-.-.-
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~--G~vlsVNsPt~ks~FwL~pl----------~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCG--GKSLNVNCPPDKLNFELGCA----------IDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CeEEEeeCCcchhHHHhhhh----------hhceEEEeeeccccccccccCCc
Confidence 6899999999999999999999997 55666775544332111111 1456899999952211
Q ss_pred ----HHHHHHHhhHhcC-cE---------------EEEeccCCCCCCCCcHHhhcccc-eeeccC
Q 008664 232 ----SQQDSFLPVIEDG-SI---------------VFIGATTENPSFHLITPLLSRCR-VLTLNP 275 (558)
Q Consensus 232 ----~~~~~Ll~~le~~-~i---------------ilI~att~n~~~~l~~aL~sR~~-~i~~~~ 275 (558)
+..+-|...++.. .| .+|.+| |.+ .++..+.-||. ++.|.+
T Consensus 500 G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~--Ney-~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTM--NEY-LIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEee--cCc-ccchhHHHHHHHhccccc
Confidence 1235677777653 21 245544 554 68888999984 677765
No 303
>PHA02774 E1; Provisional
Probab=97.75 E-value=0.00018 Score=77.77 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHHHHHHcCC-CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEE-EecccccHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 147 SLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC-LSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 147 ~~l~~~i~~~~-~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
..|+.+++... .+.++|+||||||||+++.+|++.++ ..++. +|... . -. +. ......+++||
T Consensus 422 ~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~--G~vi~fvN~~s-~--Fw---Lq-------pl~d~ki~vlD 486 (613)
T PHA02774 422 TALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK--GKVISFVNSKS-H--FW---LQ-------PLADAKIALLD 486 (613)
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEECcc-c--cc---cc-------hhccCCEEEEe
Confidence 66777776543 37899999999999999999999987 44433 33211 0 00 11 11245799999
Q ss_pred CCccCC-HHHHHHHHhhHhcCc---------------EEEEeccCCCCCC-CCcHHhhcccceeecc
Q 008664 225 EVHRFN-KSQQDSFLPVIEDGS---------------IVFIGATTENPSF-HLITPLLSRCRVLTLN 274 (558)
Q Consensus 225 Eid~l~-~~~~~~Ll~~le~~~---------------iilI~att~n~~~-~l~~aL~sR~~~i~~~ 274 (558)
|+-.-. .-....|..+++... -.+|.+|+.+... .--..|.||+.++.|+
T Consensus 487 D~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~ 553 (613)
T PHA02774 487 DATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFP 553 (613)
T ss_pred cCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECC
Confidence 993221 223446777776642 2355555433321 1235688898887776
No 304
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.71 E-value=0.001 Score=68.04 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=39.1
Q ss_pred eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHH
Q 008664 270 VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328 (558)
Q Consensus 270 ~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~ 328 (558)
.|.+++++.+|.+.++...... ++ -.....++...+.+.-.++||+|.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~---~~-----l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADS---GW-----LRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHC---Cc-----cccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999988765 11 011145667778888889999998864
No 305
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.69 E-value=0.00087 Score=65.45 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=72.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-----------------cHHHHHHHHH-------HHHH-hh-
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-----------------GVKDVRDAVE-------DARK-LR- 212 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-----------------~~~~i~~~~~-------~~~~-~~- 212 (558)
-.+++.|++|+|||+++..+...+...+..+.+-+... ..+.+...+. +... ..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 46999999999999999999887764343333332211 1112222211 1111 10
Q ss_pred hhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc---EEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHH
Q 008664 213 VKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS---IVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKR 287 (558)
Q Consensus 213 ~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~---iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~ 287 (558)
.......+||+||+.. .....+.+..++..|+ +.+|..+ .....+++.+++-+..+.+-+.+..++..+++.
T Consensus 94 ~k~~~~~LiIlDD~~~-~~~k~~~l~~~~~~gRH~~is~i~l~--Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGD-KKLKSKILRQFFNNGRHYNISIIFLS--QSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRN 168 (241)
T ss_pred cCCCCCeEEEEeCCCC-chhhhHHHHHHHhcccccceEEEEEe--eecccCCHHHhhcceEEEEecCcHHHHHHHHHh
Confidence 0112368999999864 2223445667776643 5555544 444678888877665444335677777665554
No 306
>PRK13695 putative NTPase; Provisional
Probab=97.69 E-value=0.00024 Score=66.35 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=43.3
Q ss_pred CCceEEEEeCCccC---CHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhccc--ceeeccCCCHHHHHHHHHHH
Q 008664 216 NKRTVLFVDEVHRF---NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRC--RVLTLNPLKPHDVEILLKRA 288 (558)
Q Consensus 216 ~~~~il~IDEid~l---~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~--~~i~~~~l~~~~i~~iL~~~ 288 (558)
.++.+|+|||+..+ .....+.+..+++.+. .+|+++.......+...+.+|. .++.+.+-+.+++...+...
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~-~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDSEK-PVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhCCC-eEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 36789999997544 4445677777776554 4444443222223445566654 57777777766666555543
No 307
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.69 E-value=0.00011 Score=76.64 Aligned_cols=114 Identities=18% Similarity=0.343 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccc-----------cHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTS-----------GVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
.++++.|||++|+|||.|.-.+...+.. ...-+.+..... +...+..+.++. .....||+||
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l------~~~~~lLcfD 134 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL------AKESRLLCFD 134 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH------HhcCCEEEEe
Confidence 3578999999999999999999999872 111111111000 111122222222 2355699999
Q ss_pred CCccCCHHH---HHHHHhhHhcCcEEEEeccCCCCCCC------------CcHHhhcccceeeccCC
Q 008664 225 EVHRFNKSQ---QDSFLPVIEDGSIVFIGATTENPSFH------------LITPLLSRCRVLTLNPL 276 (558)
Q Consensus 225 Eid~l~~~~---~~~Ll~~le~~~iilI~att~n~~~~------------l~~aL~sR~~~i~~~~l 276 (558)
|++--+... ...|+..+=+..+++|++++..|... ....|.++|.++.+...
T Consensus 135 EF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 135 EFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred eeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 998765443 33445544456677777665444321 12345567777766554
No 308
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00067 Score=64.63 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=58.9
Q ss_pred CchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC------CceEEEEecccc------cHH------------
Q 008664 144 SPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV------SYKFVCLSAVTS------GVK------------ 199 (558)
Q Consensus 144 ~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~------~~~~i~l~~~~~------~~~------------ 199 (558)
|....+...+-.....+.|+.|||||||||+.+-||+.+.. ...+..++..+. +..
T Consensus 123 Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld 202 (308)
T COG3854 123 GTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD 202 (308)
T ss_pred ccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc
Confidence 33344555554444567999999999999999999998752 123333332111 111
Q ss_pred ---HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 200 ---DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 200 ---~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
.-..++...++ -.+.|+++|||.... ...+++..++.| +.+|++.
T Consensus 203 ~cpk~~gmmmaIrs-----m~PEViIvDEIGt~~--d~~A~~ta~~~G-Vkli~Ta 250 (308)
T COG3854 203 PCPKAEGMMMAIRS-----MSPEVIIVDEIGTEE--DALAILTALHAG-VKLITTA 250 (308)
T ss_pred cchHHHHHHHHHHh-----cCCcEEEEeccccHH--HHHHHHHHHhcC-cEEEEee
Confidence 11122222332 268899999998653 344566666655 4455444
No 309
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.60 E-value=0.00025 Score=70.00 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCCC---ce-EEEEecc---------------------ccc-HH---HHHHHHHH
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVS---YK-FVCLSAV---------------------TSG-VK---DVRDAVED 207 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~~---~~-~i~l~~~---------------------~~~-~~---~i~~~~~~ 207 (558)
+...++|.||+|+|||||++.+++.+... .. ++.+... +.. .. -...++..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 33569999999999999999999988632 12 2221111 111 11 11233334
Q ss_pred HHHhhhhcCCceEEEEeCCccCCHHH
Q 008664 208 ARKLRVKSNKRTVLFVDEVHRFNKSQ 233 (558)
Q Consensus 208 ~~~~~~~~~~~~il~IDEid~l~~~~ 233 (558)
+.... ..++..+|||||++++....
T Consensus 95 a~~~~-~~G~~vll~iDei~r~a~a~ 119 (249)
T cd01128 95 AKRLV-EHGKDVVILLDSITRLARAY 119 (249)
T ss_pred HHHHH-HCCCCEEEEEECHHHhhhhh
Confidence 43332 34678899999999987654
No 310
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.59 E-value=0.00041 Score=66.27 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=50.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCC--ceEEEEeccc---------------c--cHHHHHHHHHHHHHhhhhcCCce
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVS--YKFVCLSAVT---------------S--GVKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~--~~~i~l~~~~---------------~--~~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
+.++|.||+|+||||++++++..+... ..++.+.... . ....+.+.+..+ ....+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~a-----Lr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAA-----LRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHH-----hcCCcC
Confidence 358999999999999999999887521 2222221100 0 011122222222 223678
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEEE
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVF 248 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~iil 248 (558)
+|++||+- +.+....+++....|..++
T Consensus 77 ~ii~gEir--d~e~~~~~l~~a~~G~~v~ 103 (198)
T cd01131 77 VILVGEMR--DLETIRLALTAAETGHLVM 103 (198)
T ss_pred EEEEcCCC--CHHHHHHHHHHHHcCCEEE
Confidence 99999994 5566677777777777643
No 311
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.57 E-value=0.00022 Score=74.52 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=54.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh--C---CCceEEEEecccccHHHHHHHHHH-------------HHHhh-------hh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV--A---VSYKFVCLSAVTSGVKDVRDAVED-------------ARKLR-------VK 214 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l--~---~~~~~i~l~~~~~~~~~i~~~~~~-------------~~~~~-------~~ 214 (558)
.+++.|.||||||.||-.+++.+ . ....++..+... ...++..+.. ..... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l--~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL--RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH--HHHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 58999999999999999999998 2 112223333211 1112222211 11111 01
Q ss_pred cCCceEEEEeCCccCCHH--------HHHHHHhhHhcCcEEEEec
Q 008664 215 SNKRTVLFVDEVHRFNKS--------QQDSFLPVIEDGSIVFIGA 251 (558)
Q Consensus 215 ~~~~~il~IDEid~l~~~--------~~~~Ll~~le~~~iilI~a 251 (558)
.....+|||||+|+|... ..+.|..++...++++++.
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~ 125 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFY 125 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEE
Confidence 246789999999999872 3467777777766555443
No 312
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.57 E-value=7.2e-05 Score=65.14 Aligned_cols=31 Identities=39% Similarity=0.814 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
++|.|+||+||||+|+.|++.++ ..++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~--~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG--FPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT--CEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CeEEEecc
Confidence 78999999999999999999998 77776654
No 313
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.55 E-value=0.00025 Score=73.57 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCC---Cce-EEEEec---------------------cccc-HHHH---HHHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAV---SYK-FVCLSA---------------------VTSG-VKDV---RDAVEDA 208 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~---~~~-~i~l~~---------------------~~~~-~~~i---~~~~~~~ 208 (558)
..-.+|+||||+|||||++.|++.... +.. ++.+.. .+.. ...+ ..+++.+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999998752 122 222111 1111 1112 2345555
Q ss_pred HHhhhhcCCceEEEEeCCccCCHHHH
Q 008664 209 RKLRVKSNKRTVLFVDEVHRFNKSQQ 234 (558)
Q Consensus 209 ~~~~~~~~~~~il~IDEid~l~~~~~ 234 (558)
.... ..+...+|||||||++++.+.
T Consensus 249 e~~~-e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 249 KRLV-EHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHH-HcCCCEEEEEEChHHHHHHHH
Confidence 5544 567888999999999987554
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.55 E-value=0.00071 Score=67.66 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+......+...+++|.||+|+||||+.+.++..+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3444555555567999999999999999999999886
No 315
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.54 E-value=0.00036 Score=64.99 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=32.8
Q ss_pred cccccCCchHHHHHHHHcC-CCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 138 GQDHLLSPNSLLRSAVCSN-RLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~~-~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.|.+++ ..+.+.+... ..+.++|.+|+|+|||-++-.++..+.
T Consensus 7 ~Q~~ai---~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAI---ARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHH---HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 344555 6666666665 568899999999999999998777665
No 316
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00087 Score=62.79 Aligned_cols=25 Identities=48% Similarity=0.783 Sum_probs=23.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+-++|+|+||+||||+|+-+|+.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4589999999999999999999986
No 317
>PTZ00202 tuzin; Provisional
Probab=97.51 E-value=0.003 Score=66.25 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=47.3
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcCC---CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSNR---LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~~---~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
-|....+++|++..+ ..+...+.... ..-+.|+||+||||||+++.+...++ ...+.++..
T Consensus 257 lPa~~~~FVGReaEl---a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~--~~qL~vNpr 320 (550)
T PTZ00202 257 APAVIRQFVSREAEE---SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG--MPAVFVDVR 320 (550)
T ss_pred CCCCccCCCCcHHHH---HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC--ceEEEECCC
Confidence 466778899999988 88888876432 24678999999999999999998887 444444444
No 318
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.50 E-value=0.00034 Score=60.89 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=34.9
Q ss_pred CccccccccCCchHHHHHHHHc----CC---CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCS----NR---LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~----~~---~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.||.-+. +.+.++++. .. +-.+-|+|+||||||.+++.||+.+.
T Consensus 25 ~~l~GQhla~---~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAV---EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHH---HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4588998766 555555543 22 23456999999999999999999974
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.49 E-value=0.0028 Score=70.82 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=97.6
Q ss_pred HHHHHHHHcC-CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec--ccccH-------------------------
Q 008664 147 SLLRSAVCSN-RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA--VTSGV------------------------- 198 (558)
Q Consensus 147 ~~l~~~i~~~-~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~--~~~~~------------------------- 198 (558)
..+.+.+..+ ..+-++|.-|.|.||||++-.++........+..++. ++...
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHH
Confidence 5555666555 4578999999999999999999875543344444443 33210
Q ss_pred ------HHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHH-HHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccc
Q 008664 199 ------KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQD-SFLPVIED--GSIVFIGATTENPSFHLITPLLSRCR 269 (558)
Q Consensus 199 ------~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~-~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~ 269 (558)
..+..++...........++..+||||.|.++....+ .|..+++. ..+++|.+|-..|...+. .++=|-.
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la-~lRlr~~ 183 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA-RLRLRDE 183 (894)
T ss_pred HHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc-ceeehhh
Confidence 1122333333332223446789999999999766544 34444454 567777777655543332 2222222
Q ss_pred eeecc----CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCH
Q 008664 270 VLTLN----PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDA 323 (558)
Q Consensus 270 ~i~~~----~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~ 323 (558)
.+.+. .++.+|..+++... .+..++...++.|...+.|=+
T Consensus 184 llEi~~~~Lrf~~eE~~~fl~~~--------------~~l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 184 LLEIGSEELRFDTEEAAAFLNDR--------------GSLPLDAADLKALYDRTEGWA 227 (894)
T ss_pred HHhcChHhhcCChHHHHHHHHHc--------------CCCCCChHHHHHHHhhcccHH
Confidence 33322 45677777777653 346778888888888877743
No 320
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.44 E-value=0.00046 Score=69.27 Aligned_cols=141 Identities=17% Similarity=0.281 Sum_probs=80.0
Q ss_pred CCCccccccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhCCC-ceEEEEecccc------------
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVAVS-YKFVCLSAVTS------------ 196 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~~~-~~~i~l~~~~~------------ 196 (558)
+++++.-..... ..+..++... ...+++|.||+|+||||+++++...+... ..++.+.....
T Consensus 102 sle~l~~~~~~~---~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~ 178 (270)
T PF00437_consen 102 SLEDLGESGSIP---EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQ 178 (270)
T ss_dssp CHCCCCHTHHCH---HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEE
T ss_pred cHhhccCchhhH---HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEE
Confidence 555555443332 4555555443 23789999999999999999999998755 55555432111
Q ss_pred ---cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 197 ---GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 197 ---~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
......+++..+.+ ..+.+|+|+|+-.- +.... +..+..|....+++...+. ......|+.-+.-
T Consensus 179 ~~~~~~~~~~~l~~~LR-----~~pD~iiigEiR~~--e~~~~-~~a~~tGh~~~~tT~Ha~s----~~~~i~Rl~~l~~ 246 (270)
T PF00437_consen 179 TRRDEISYEDLLKSALR-----QDPDVIIIGEIRDP--EAAEA-IQAANTGHLGSLTTLHANS----AEDAIERLADLGM 246 (270)
T ss_dssp EETTTBSHHHHHHHHTT-----S--SEEEESCE-SC--HHHHH-HHHHHTT-EEEEEEEE-SS----HHHHHHHHHHHCC
T ss_pred eecCcccHHHHHHHHhc-----CCCCcccccccCCH--hHHHH-HHhhccCCceeeeeeecCC----HHHHHHHHHHHhc
Confidence 22344555555422 37889999999754 55555 8888888887555443222 1233444422111
Q ss_pred cCCCHHHHHHHHHHH
Q 008664 274 NPLKPHDVEILLKRA 288 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~ 288 (558)
..+.+.+...+...
T Consensus 247 -~~~~~~l~~~l~~~ 260 (270)
T PF00437_consen 247 -EMDPESLRSRLASA 260 (270)
T ss_dssp -TSCHHHHHHHHHHH
T ss_pred -ccCHHHHHHHHHhH
Confidence 15555555555443
No 321
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.44 E-value=0.0005 Score=60.27 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++++++||+|+|||+++..++..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999998888877764
No 322
>PRK08118 topology modulation protein; Reviewed
Probab=97.41 E-value=0.0029 Score=58.74 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=28.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.+++.||||+||||+|+.|++.++ .+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN--IPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCceecch
Confidence 589999999999999999999999 77776654
No 323
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.40 E-value=0.0005 Score=71.62 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCC-c---eEEEEecc---------------------cccH----HHHHHHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVS-Y---KFVCLSAV---------------------TSGV----KDVRDAVEDA 208 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~-~---~~i~l~~~---------------------~~~~----~~i~~~~~~~ 208 (558)
...++|.||||+|||||++.|++.+..+ . .++.+... +... .-...+++.+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 3569999999999999999999987522 1 12222211 1011 1112233333
Q ss_pred HHhhhhcCCceEEEEeCCccCCHHHHH
Q 008664 209 RKLRVKSNKRTVLFVDEVHRFNKSQQD 235 (558)
Q Consensus 209 ~~~~~~~~~~~il~IDEid~l~~~~~~ 235 (558)
.... ..++..||||||+|++.+.+..
T Consensus 248 e~~~-~~GkdVVLlIDEitR~arAqre 273 (415)
T TIGR00767 248 KRLV-EHKKDVVILLDSITRLARAYNT 273 (415)
T ss_pred HHHH-HcCCCeEEEEEChhHHHHHHHH
Confidence 3333 4577889999999999886544
No 324
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00013 Score=64.70 Aligned_cols=34 Identities=35% Similarity=0.681 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.+++|++|-|||||||++..||...+ +.++.++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~--~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG--LEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC--CceEehhh
Confidence 48899999999999999999999999 88887763
No 325
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.38 E-value=0.00012 Score=78.98 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=41.6
Q ss_pred CCCCCCccccccccCCchHHHHHHHHc------CCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCS------NRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~------~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+-..|+|++|+++.+ ..+...+.. .+...++|.||||+|||+|++.|++.+.
T Consensus 71 ry~fF~d~yGlee~i---eriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 71 RYPAFEEFYGMEEAI---EQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccchhcccCcHHHH---HHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 344688999999998 666666622 2337899999999999999999999875
No 326
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.38 E-value=0.0004 Score=79.07 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=60.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCc--eEEEEeccc-ccHHHH-----------HHHHHHHHHh-----hhhcCCce
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSY--KFVCLSAVT-SGVKDV-----------RDAVEDARKL-----RVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~--~~i~l~~~~-~~~~~i-----------~~~~~~~~~~-----~~~~~~~~ 219 (558)
+.++|.|+|||||||+++++.+.+.... ..+.+-+.+ .....+ ..++...... ........
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 4799999999999999999988765221 223332222 111122 2222110000 00012467
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccCCCC
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATTENP 256 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att~n~ 256 (558)
+|||||+.+++......|+..+.. .+++++|-...-|
T Consensus 419 llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 419 LLIVDESSMMDTWLALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred EEEEeccccCCHHHHHHHHHhCCCCCEEEEECcccccc
Confidence 999999999999998899888865 4677777554433
No 327
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.35 E-value=0.00059 Score=69.65 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=37.4
Q ss_pred CccccccccCCchHHHHHHHHcC------CCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSN------RLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~------~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+++.|-++.+ ..+...++.. +.+.++|.||+|+||||+++.|.+.+.
T Consensus 61 ~~~~G~~~~i---~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETI---ERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHH---HHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789988887 6666655442 237899999999999999999998875
No 328
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.35 E-value=0.00049 Score=78.62 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=58.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHH-----------HHHHHHHHHhhhhcCCceEEEEeCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDV-----------RDAVEDARKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~il~IDEi 226 (558)
+.++|.|+|||||||+++.+...+.. ...++-+..+......+ ..++..............+|||||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 46899999999999999999876531 24444443322211112 1121111111111236789999999
Q ss_pred ccCCHHHHHHHHhhHhc--CcEEEEecc
Q 008664 227 HRFNKSQQDSFLPVIED--GSIVFIGAT 252 (558)
Q Consensus 227 d~l~~~~~~~Ll~~le~--~~iilI~at 252 (558)
.+++......|+..... .+++|+|-.
T Consensus 449 sMv~~~~~~~Ll~~~~~~~~kliLVGD~ 476 (744)
T TIGR02768 449 GMVGSRQMARVLKEAEEAGAKVVLVGDP 476 (744)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEECCh
Confidence 99999988888886543 557777744
No 329
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.34 E-value=0.00021 Score=69.07 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=40.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-----------------ccHHHHHHHHHHHHHhhhhcCCceEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT-----------------SGVKDVRDAVEDARKLRVKSNKRTVL 221 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~il 221 (558)
..+||||+||+||||+|+.++... -++...... ...+.+.+.+..... ....+.+|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~~----~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~---~~~~ydtV 85 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGKT----LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNI---QAVKYDNI 85 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCCC----EEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHh---ccccCCEE
Confidence 569999999999999999987421 122221110 122344444443322 23468899
Q ss_pred EEeCCccCCH
Q 008664 222 FVDEVHRFNK 231 (558)
Q Consensus 222 ~IDEid~l~~ 231 (558)
|||.|+.+..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998643
No 330
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.33 E-value=0.001 Score=62.55 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=19.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
+++++||||+|||+++..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37999999999999998877654
No 331
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.00077 Score=64.24 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+||||.+-.+|..+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh
Confidence 3589999999999999888887764
No 332
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.30 E-value=0.00023 Score=69.50 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=50.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC----CCceEEEEeccc--ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHH
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVA----VSYKFVCLSAVT--SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQ 234 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~----~~~~~i~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~ 234 (558)
+++.|+||+|||++++.+..... ............ ......+ .+..+............++|||+..++....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~s~~~~~~~~~~~~~liiDE~~~~~~g~l 79 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDRLVVTVISPTIELYTEWLPDPPSKSVR-TVDSFLKALVKPKSYDTLIIDEAQLLPPGYL 79 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhccccccccccceeccccccccCCcccc-EEeEhhhcccccCcCCEEEEeccccCChHHH
Confidence 47899999999999999998830 000011111100 0000000 0111111110112478999999999998877
Q ss_pred HHHHhhHhcCcEEEEecc
Q 008664 235 DSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 235 ~~Ll~~le~~~iilI~at 252 (558)
..|+.......++++|-.
T Consensus 80 ~~l~~~~~~~~~~l~GDp 97 (234)
T PF01443_consen 80 LLLLSLSPAKNVILFGDP 97 (234)
T ss_pred HHHHhhccCcceEEEECc
Confidence 775555555677777644
No 333
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.25 E-value=0.0011 Score=77.01 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=58.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccH-----------HHHHHHHHHHHHhhhhcCCceEEEEeCCc
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGV-----------KDVRDAVEDARKLRVKSNKRTVLFVDEVH 227 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~-----------~~i~~~~~~~~~~~~~~~~~~il~IDEid 227 (558)
.++|.|++||||||+.+.+...+.. ...++-+..+..-. ..+..++..............||||||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 5789999999999998887665431 14444443222111 11222221111111112356799999999
Q ss_pred cCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 228 RFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 228 ~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
+++......|+...+. .++++||-+..
T Consensus 444 Mv~~~~m~~LL~~a~~~garvVLVGD~~Q 472 (988)
T PRK13889 444 MVGTRQLERVLSHAADAGAKVVLVGDPQQ 472 (988)
T ss_pred cCCHHHHHHHHHhhhhCCCEEEEECCHHH
Confidence 9999988888887654 46778776543
No 334
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.24 E-value=0.0016 Score=62.12 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFL 238 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll 238 (558)
..++|.|+.|+||||..+.|..... ... +. ....++. ..... ..-|+.+||++.+.+..++.|.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~--~d~--~~--~~~~kd~---~~~l~-------~~~iveldEl~~~~k~~~~~lK 116 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYF--SDS--IN--DFDDKDF---LEQLQ-------GKWIVELDELDGLSKKDVEALK 116 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhc--cCc--cc--cCCCcHH---HHHHH-------HhHheeHHHHhhcchhhHHHHH
Confidence 4689999999999999999965533 111 11 1111111 11111 3358999999999999999999
Q ss_pred hhHhcC-----------------cEEEEeccCCCCCCCCcHHhhcccceeeccC
Q 008664 239 PVIEDG-----------------SIVFIGATTENPSFHLITPLLSRCRVLTLNP 275 (558)
Q Consensus 239 ~~le~~-----------------~iilI~att~n~~~~l~~aL~sR~~~i~~~~ 275 (558)
.++-.. ..+||++|+. ..+.-++.=-+|+.++.+..
T Consensus 117 ~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~-~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 117 SFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND-DDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred HHhcccceeeecCCcCcceeeceeEEEEeccCC-cceeeCCCCCeEEEEEEEcC
Confidence 888541 2456666643 33333455557888777766
No 335
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.22 E-value=0.0019 Score=66.09 Aligned_cols=86 Identities=19% Similarity=0.334 Sum_probs=53.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc----------------c--cc--HHHHHHHHHHHHHhhhhcCCc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV----------------T--SG--VKDVRDAVEDARKLRVKSNKR 218 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~----------------~--~~--~~~i~~~~~~~~~~~~~~~~~ 218 (558)
.+++|.||+|+||||+++++...+......+.+... . .+ .-...+++..+. ...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L-----r~~p 219 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL-----RMRP 219 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh-----cCCC
Confidence 689999999999999999999887633232222110 0 00 112333443332 2378
Q ss_pred eEEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 219 TVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 219 ~il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
.+|++||+-. .+.. .+++.+..|....++++
T Consensus 220 d~ii~gE~r~--~e~~-~~l~a~~~g~~~~i~T~ 250 (308)
T TIGR02788 220 DRIILGELRG--DEAF-DFIRAVNTGHPGSITTL 250 (308)
T ss_pred CeEEEeccCC--HHHH-HHHHHHhcCCCeEEEEE
Confidence 8999999975 4443 46777767765544443
No 336
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.22 E-value=0.0024 Score=66.43 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEecc---------------ccc--HHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAV---------------TSG--VKDVRDAVED 207 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~~---------------~~~--~~~i~~~~~~ 207 (558)
..+..++... ...++|+||+|+||||+.+++.+.+.. ...++.+... ..+ ...+...+..
T Consensus 112 ~~l~~~~~~~-~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~ 190 (343)
T TIGR01420 112 PVLRELAERP-RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRA 190 (343)
T ss_pred HHHHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHH
Confidence 3455555332 377999999999999999999987752 1233322110 001 1123333333
Q ss_pred HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE
Q 008664 208 ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246 (558)
Q Consensus 208 ~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i 246 (558)
+ ....+.+|++||+- +.......+.....|..
T Consensus 191 ~-----lr~~pd~i~vgEir--d~~~~~~~l~aa~tGh~ 222 (343)
T TIGR01420 191 A-----LREDPDVILIGEMR--DLETVELALTAAETGHL 222 (343)
T ss_pred h-----hccCCCEEEEeCCC--CHHHHHHHHHHHHcCCc
Confidence 3 22478999999995 66666666777777776
No 337
>PF13245 AAA_19: Part of AAA domain
Probab=97.21 E-value=0.001 Score=53.08 Aligned_cols=45 Identities=36% Similarity=0.649 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHH-HHHHHHHHHhCC----CceEEEEecccccHHHHHH
Q 008664 159 PSIIFWGPPGTGKT-TLAKAIVNSVAV----SYKFVCLSAVTSGVKDVRD 203 (558)
Q Consensus 159 ~~~LL~GppGtGKT-tLa~~la~~l~~----~~~~i~l~~~~~~~~~i~~ 203 (558)
+.+++.||||+||| ++++.++..+.. ...++.+.......+++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~ 60 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRE 60 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHH
Confidence 44667999999999 566666666521 2455555554444444433
No 338
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.20 E-value=0.0066 Score=63.58 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=104.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHH--HHHHHHhCCCceEEEEecccc----------------------------
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLA--KAIVNSVAVSYKFVCLSAVTS---------------------------- 196 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa--~~la~~l~~~~~~i~l~~~~~---------------------------- 196 (558)
+.|+.|+....---+++.||.|+||+.|+ +++...- .++.++|...
T Consensus 6 ~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~----~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nS 81 (431)
T PF10443_consen 6 EQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK----NVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNS 81 (431)
T ss_pred HHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC----CEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHH
Confidence 78999998876667899999999999999 5555432 2444444110
Q ss_pred ----------------------cHHHHHHHHHHHHHhhhh------------------------cCCceEEEEeCCccCC
Q 008664 197 ----------------------GVKDVRDAVEDARKLRVK------------------------SNKRTVLFVDEVHRFN 230 (558)
Q Consensus 197 ----------------------~~~~i~~~~~~~~~~~~~------------------------~~~~~il~IDEid~l~ 230 (558)
....+++++......... -..+.||+||.+..-.
T Consensus 82 iss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~ 161 (431)
T PF10443_consen 82 ISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKA 161 (431)
T ss_pred HHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccC
Confidence 123444444433221100 0126799999997544
Q ss_pred HHHHHHHHhhH--------hcCcEEEEeccCCC-CCCCCcHHhhcc-cceeeccCCCHHHHHHHHHHHHHhHhccc----
Q 008664 231 KSQQDSFLPVI--------EDGSIVFIGATTEN-PSFHLITPLLSR-CRVLTLNPLKPHDVEILLKRAVDDVNNGL---- 296 (558)
Q Consensus 231 ~~~~~~Ll~~l--------e~~~iilI~att~n-~~~~l~~aL~sR-~~~i~~~~l~~~~i~~iL~~~l~~~~~~~---- 296 (558)
.. .+.+...| +..--.+|+.|+.. ....+.++|-+| |..|.+...+.+..+.++...+......-
T Consensus 162 ~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~ 240 (431)
T PF10443_consen 162 EE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSK 240 (431)
T ss_pred cc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccc
Confidence 33 33333333 22322334434322 234566777776 47899999999999999988886521100
Q ss_pred ccccC--Cccc---ccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 297 SKSVG--GTRV---EVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 297 ~~~~~--~~~~---~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
..... .... ..+...++.....-+|-+..+.-+.+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 241 ESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred ccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00000 0000 12445566666667777777666666654
No 339
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.20 E-value=0.00074 Score=63.12 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.5
Q ss_pred CeEEEEcCCCchHHH-HHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTT-LAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTt-La~~la~~l~ 183 (558)
.++++.||+|+|||+ ++..+.+.+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 679999999999999 5555555544
No 340
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.19 E-value=0.0025 Score=63.70 Aligned_cols=93 Identities=14% Similarity=0.236 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccc--------------cHHHHHHHHHHHHHh
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTS--------------GVKDVRDAVEDARKL 211 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~--------------~~~~i~~~~~~~~~~ 211 (558)
..+..++... ...++|.||+|+||||+++++...+.. ...++.+..... ....+...+..+.
T Consensus 70 ~~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~l-- 146 (264)
T cd01129 70 EIFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAIL-- 146 (264)
T ss_pred HHHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHh--
Confidence 4555555433 357999999999999999999887752 233333321100 0112333444332
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEE
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~ii 247 (558)
...+.+|+|+|+-. .+....+++....|..+
T Consensus 147 ---R~~PD~i~vgEiR~--~e~a~~~~~aa~tGh~v 177 (264)
T cd01129 147 ---RQDPDIIMVGEIRD--AETAEIAVQAALTGHLV 177 (264)
T ss_pred ---ccCCCEEEeccCCC--HHHHHHHHHHHHcCCcE
Confidence 23789999999963 34556677888888763
No 341
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.17 E-value=0.0021 Score=66.51 Aligned_cols=84 Identities=15% Similarity=0.376 Sum_probs=52.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc----------------c----ccHHHHHHHHHHHHHhhhhcCCc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV----------------T----SGVKDVRDAVEDARKLRVKSNKR 218 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~----------------~----~~~~~i~~~~~~~~~~~~~~~~~ 218 (558)
.++++.||+|+||||+++++...+..+...+.+... . .+.-...+++..+.+ ..+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR-----~~p 237 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLR-----MRP 237 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhc-----CCC
Confidence 689999999999999999999988633333322110 0 011123344444433 378
Q ss_pred eEEEEeCCccCCHHHHHHHHhhHhcCcEEEEe
Q 008664 219 TVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIG 250 (558)
Q Consensus 219 ~il~IDEid~l~~~~~~~Ll~~le~~~iilI~ 250 (558)
..|++.|+-. .+..+ +++.+..|..-.+.
T Consensus 238 D~IivGEiR~--~ea~~-~l~a~~tGh~G~lt 266 (344)
T PRK13851 238 DRILLGEMRD--DAAWA-YLSEVVSGHPGSIS 266 (344)
T ss_pred CeEEEEeeCc--HHHHH-HHHHHHhCCCcEEE
Confidence 8999999974 44444 66777776653443
No 342
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.012 Score=60.67 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=37.7
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHH
Q 008664 267 RCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALN 328 (558)
Q Consensus 267 R~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~ 328 (558)
-|..|.+++++.+|..+++..++...-.. +. ...++..+.+.-.++||++.+..
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~-------kk-v~~Ee~~kql~fLSngNP~l~~~ 455 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLL-------KK-VPGEENIKQLYFLSNGNPSLMER 455 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHH-------hh-cCcccchhhhhhhcCCCHHHHHH
Confidence 45678899999999999999988761100 01 12266778888889999954433
No 343
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.16 E-value=0.0019 Score=66.62 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=54.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec-----------------ccc----cHHHHHHHHHHHHHhhhhcCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA-----------------VTS----GVKDVRDAVEDARKLRVKSNK 217 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~-----------------~~~----~~~~i~~~~~~~~~~~~~~~~ 217 (558)
.+++++|++|+||||+++++...+..+.+++.+-. ... +.-...+++..+.+ .+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR-----~~ 235 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLR-----LR 235 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhc-----cC
Confidence 68999999999999999999998874333322211 000 11123445554433 37
Q ss_pred ceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEe
Q 008664 218 RTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIG 250 (558)
Q Consensus 218 ~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~ 250 (558)
+..|++.|+.. .+.. .+++.+..|..-.++
T Consensus 236 PD~IivGEiR~--~ea~-~~l~a~~tGh~G~~t 265 (332)
T PRK13900 236 PDRIIVGELRG--AEAF-SFLRAINTGHPGSIS 265 (332)
T ss_pred CCeEEEEecCC--HHHH-HHHHHHHcCCCcEEE
Confidence 88999999984 4444 467788887653343
No 344
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.14 E-value=0.0014 Score=61.85 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc----cHHH-------HHHHHHHHHHhhhhcCCceEEEEeCC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS----GVKD-------VRDAVEDARKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~----~~~~-------i~~~~~~~~~~~~~~~~~~il~IDEi 226 (558)
...++|+||+|+|||||++.+.+... ..++.++.++. ++.+ -++-|+.... .+..+--.++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~--~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~------~~~f~e~~~~ 75 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP--DFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIA------DGEFLEWAEV 75 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC--ccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHH------cCCeEEEEEE
Confidence 35689999999999999999988764 22233333221 1100 0111222111 2233333343
Q ss_pred cc-CCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhccc----ceeeccCCCHHHHHHHHH
Q 008664 227 HR-FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRC----RVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 227 d~-l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~----~~i~~~~l~~~~i~~iL~ 286 (558)
+. +-....+.+...++.|.++++-.... . ...+...+ .+|.+.|++.+.+...+.
T Consensus 76 ~g~~YGt~~~~i~~~~~~g~~~i~d~~~~-g----~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~ 135 (186)
T PRK14737 76 HDNYYGTPKAFIEDAFKEGRSAIMDIDVQ-G----AKIIKEKFPERIVTIFIEPPSEEEWEERLI 135 (186)
T ss_pred CCeeecCcHHHHHHHHHcCCeEEEEcCHH-H----HHHHHHhCCCCeEEEEEECCCHHHHHHHHH
Confidence 32 22233445666777787776543211 1 12233322 367778888777666554
No 345
>PRK13949 shikimate kinase; Provisional
Probab=97.13 E-value=0.0017 Score=60.40 Aligned_cols=33 Identities=36% Similarity=0.532 Sum_probs=29.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..++|.|+||+||||+++.+|+.++ .+++..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~--~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG--LSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CCeecccH
Confidence 3689999999999999999999999 88877653
No 346
>PRK06547 hypothetical protein; Provisional
Probab=97.11 E-value=0.0028 Score=59.04 Aligned_cols=39 Identities=31% Similarity=0.605 Sum_probs=31.2
Q ss_pred HHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 152 AVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 152 ~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+.......++|.|++|+||||+++.+++.++ ..++.++
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d 47 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLD 47 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeeccc
Confidence 34455567788999999999999999999987 6666554
No 347
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.10 E-value=0.0021 Score=59.74 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=27.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
.+++.|+||+|||++|..++..++ .+.+.+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~--~~~~~iat~~~ 37 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG--LQVLYIATAQP 37 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC--CCcEeCcCCCC
Confidence 489999999999999999999877 44455554333
No 348
>PRK03839 putative kinase; Provisional
Probab=97.10 E-value=0.00043 Score=64.96 Aligned_cols=31 Identities=39% Similarity=0.704 Sum_probs=27.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.++|.|+||+||||+++.+|+.++ ..++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEehh
Confidence 489999999999999999999999 8887654
No 349
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00083 Score=61.87 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=30.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.+++|.|++|+||||+.+.+|+.++ .+|+..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~--~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN--LPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC--CCcccchH
Confidence 5799999999999999999999999 99988764
No 350
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.09 E-value=0.00052 Score=63.62 Aligned_cols=32 Identities=28% Similarity=0.648 Sum_probs=28.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|+|+||+||||+++.+|+.++ ..++..+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~--~~~~d~d 36 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLG--YDFIDTD 36 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC--CCEEECh
Confidence 5799999999999999999999998 7777543
No 351
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0045 Score=65.07 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=48.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-------CCceEEEEecccccH-HHHHHH-------------HHHHHHhhhhcC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-------VSYKFVCLSAVTSGV-KDVRDA-------------VEDARKLRVKSN 216 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-------~~~~~i~l~~~~~~~-~~i~~~-------------~~~~~~~~~~~~ 216 (558)
...++|+||+|+||||++..+|..+. ....++.+++...+. ..++.. ............
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 35799999999999999999998753 123344444422211 111100 011111111224
Q ss_pred CceEEEEeCCccCCHH--HHHHHHhhHh
Q 008664 217 KRTVLFVDEVHRFNKS--QQDSFLPVIE 242 (558)
Q Consensus 217 ~~~il~IDEid~l~~~--~~~~Ll~~le 242 (558)
...+||||.+.+...+ ....+..+++
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 6789999999988754 3345555555
No 352
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.08 E-value=0.0015 Score=72.35 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred ceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEecc
Q 008664 218 RTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGAT 252 (558)
Q Consensus 218 ~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~at 252 (558)
..+|||||+-+++......|+..+.. .+++++|-.
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCCCEEEEECCh
Confidence 46999999999999988888888865 567777644
No 353
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.08 E-value=0.0027 Score=60.74 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|+||+|+||||+.+.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 458999999999999999998543
No 354
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00082 Score=74.58 Aligned_cols=224 Identities=20% Similarity=0.193 Sum_probs=131.4
Q ss_pred hhhcCCCCCCccccccccCCchHHHHHH------HHcCCCCeEEEEc----CCCchHHHHHHHHHHHhC--------CCc
Q 008664 125 SERMRPVNINDVVGQDHLLSPNSLLRSA------VCSNRLPSIIFWG----PPGTGKTTLAKAIVNSVA--------VSY 186 (558)
Q Consensus 125 ~~~~rp~~~~dviGq~~~i~~~~~l~~~------i~~~~~~~~LL~G----ppGtGKTtLa~~la~~l~--------~~~ 186 (558)
.+..+|..+.++.+++... ...... .......++..+| ++|++++..++.+-.... ...
T Consensus 95 ~~~~~~~~~~~~~~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~ 171 (647)
T COG1067 95 VPAGRPESFSELLGQKAEE---KAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPK 171 (647)
T ss_pred ccccCCcchHHHHHhhhhH---HHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhh
Confidence 4456678888899887665 222222 2222235678888 999999999876655522 001
Q ss_pred eEEEEe---ccc---ccHHHHHHHHHHH-----------------HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc
Q 008664 187 KFVCLS---AVT---SGVKDVRDAVEDA-----------------RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED 243 (558)
Q Consensus 187 ~~i~l~---~~~---~~~~~i~~~~~~~-----------------~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~ 243 (558)
.|++.. ... ........++... +.......+++||||||+..|....+..+|+.+..
T Consensus 172 ~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~ 251 (647)
T COG1067 172 NFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLD 251 (647)
T ss_pred hhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHh
Confidence 111110 000 0000011111111 11111234789999999999997666666666654
Q ss_pred Cc-----------------------EEEEeccCCCCCCCCcHHhhcccce----eecc---CCCHHHHHHHHHHHHHhHh
Q 008664 244 GS-----------------------IVFIGATTENPSFHLITPLLSRCRV----LTLN---PLKPHDVEILLKRAVDDVN 293 (558)
Q Consensus 244 ~~-----------------------iilI~att~n~~~~l~~aL~sR~~~----i~~~---~l~~~~i~~iL~~~l~~~~ 293 (558)
.+ +.+|++.+......+.+.+.+|..- ..|+ |.++++..+++..+.....
T Consensus 252 k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~ 331 (647)
T COG1067 252 KEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELA 331 (647)
T ss_pred ccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHH
Confidence 32 3344444333333444455555422 4444 3356777777777776644
Q ss_pred cccccccCCcccccChHHHHHHHHh----C------CCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCcc
Q 008664 294 NGLSKSVGGTRVEVNHDAIEFLCSN----C------DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVA 363 (558)
Q Consensus 294 ~~~~~~~~~~~~~i~~~al~~La~~----s------~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (558)
..- .-..++.+|+..|.+. + .-.+|.+.++++.+...+..+ + ..
T Consensus 332 ~d~------~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~-------------~-------~~ 385 (647)
T COG1067 332 RDG------NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSE-------------G-------RK 385 (647)
T ss_pred hcC------CCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcC-------------C-------cc
Confidence 432 5677899999888776 2 127899999999888777652 3 56
Q ss_pred ccCHHHHHHHHhhc
Q 008664 364 LVTLDDAKEAFQCK 377 (558)
Q Consensus 364 ~It~e~v~~~l~~~ 377 (558)
.||.+||.++++++
T Consensus 386 ~I~ae~Ve~a~~~~ 399 (647)
T COG1067 386 LITAEDVEEALQKR 399 (647)
T ss_pred cCcHHHHHHHHHhh
Confidence 89999999999874
No 355
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.08 E-value=0.0021 Score=71.46 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=57.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC---C-CceEEEEecccc-cHHHHHHHHHH------------------HH---Hhh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA---V-SYKFVCLSAVTS-GVKDVRDAVED------------------AR---KLR 212 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~---~-~~~~i~l~~~~~-~~~~i~~~~~~------------------~~---~~~ 212 (558)
+-.+|+|+|||||||+++.+...+. . ....+.+.+.+. -...+.+.+.. +. +..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 5699999999999999988776652 1 112333333222 12222222211 10 000
Q ss_pred h--------hc-----CCceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEecc
Q 008664 213 V--------KS-----NKRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGAT 252 (558)
Q Consensus 213 ~--------~~-----~~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~at 252 (558)
. .. -...+|||||+.+++-.....|+..+.. .+++++|-.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecch
Confidence 0 00 1236999999999999988889888866 567787754
No 356
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.07 E-value=0.0018 Score=67.75 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEec
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSA 193 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~ 193 (558)
..|-+.+..+-. ..++|+|+||+|||+++..++..+.. ...++.++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 444444443322 46899999999999999999876542 135555554
No 357
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.07 E-value=0.0019 Score=68.85 Aligned_cols=148 Identities=19% Similarity=0.306 Sum_probs=88.4
Q ss_pred cccccccCCchHHHHHHHHcCC---------C---CeEEEEcCCCchHHHHHHHHHHHhCC-------CceEEEEecccc
Q 008664 136 VVGQDHLLSPNSLLRSAVCSNR---------L---PSIIFWGPPGTGKTTLAKAIVNSVAV-------SYKFVCLSAVTS 196 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~~~---------~---~~~LL~GppGtGKTtLa~~la~~l~~-------~~~~i~l~~~~~ 196 (558)
|.|++.+. +.+.-++-.+. + -++|+.|.|-|.|+.|.|.+.+.... ...-+-+.+.-.
T Consensus 303 I~GH~~vK---kAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 303 IYGHDYVK---KAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred cccHHHHH---HHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 66887775 55555544432 1 47999999999999999999987650 011111111111
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEE---------------EEeccCCCCC----
Q 008664 197 GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV---------------FIGATTENPS---- 257 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~ii---------------lI~att~n~~---- 257 (558)
...+-.+---++... -...++|++|||+|.|+.-..-++..+||.+++. ++++. ||-
T Consensus 380 tD~eTGERRLEAGAM--VLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA--NPvyG~Y 455 (818)
T KOG0479|consen 380 TDQETGERRLEAGAM--VLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA--NPVYGQY 455 (818)
T ss_pred eccccchhhhhcCce--EEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec--Ccccccc
Confidence 111111111111111 2246889999999999988888999999997764 34444 442
Q ss_pred ---------CCCcHHhhcccc--eeeccCCCHHHHHHHHHHHHH
Q 008664 258 ---------FHLITPLLSRCR--VLTLNPLKPHDVEILLKRAVD 290 (558)
Q Consensus 258 ---------~~l~~aL~sR~~--~i~~~~l~~~~i~~iL~~~l~ 290 (558)
-.+...|+|||. .+.+...+.+-=+.|-.+.+.
T Consensus 456 d~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 456 DQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred CCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 136678999994 444555555444444444443
No 358
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.07 E-value=0.00076 Score=70.76 Aligned_cols=95 Identities=25% Similarity=0.325 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHH-------------
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVE------------- 206 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~------------- 206 (558)
..+.+.+.......+++.||.|||||++.++|...+......+.+.+++. +-..+...+.
T Consensus 11 ~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~ 90 (364)
T PF05970_consen 11 DTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKI 90 (364)
T ss_pred HHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccc
Confidence 44444555566688999999999999999999988863222233322211 0000000000
Q ss_pred -HHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhH
Q 008664 207 -DARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241 (558)
Q Consensus 207 -~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~l 241 (558)
...........-.+||||||-+++....+.+-..+
T Consensus 91 ~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~l 126 (364)
T PF05970_consen 91 SKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRL 126 (364)
T ss_pred cccchhhhhhhhheeeecccccchhHHHHHHHHHhh
Confidence 00011112235579999999999988776554433
No 359
>PRK13947 shikimate kinase; Provisional
Probab=97.06 E-value=0.00056 Score=63.49 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=29.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.+++|.|+||+||||+++.+|+.++ .+|+..+.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg--~~~id~d~ 34 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLS--FGFIDTDK 34 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC--CCEEECch
Confidence 3699999999999999999999999 88876554
No 360
>PRK00625 shikimate kinase; Provisional
Probab=97.06 E-value=0.00053 Score=63.99 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=29.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
+++|.|.||+||||+++.+|+.++ .+++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CCEEEhhH
Confidence 589999999999999999999999 88888764
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.06 E-value=0.00055 Score=61.30 Aligned_cols=29 Identities=41% Similarity=0.750 Sum_probs=25.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
+++.||||+||||+|+.+++.++ ..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~ 30 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQ 30 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeH
Confidence 78999999999999999999988 555443
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=97.05 E-value=0.0037 Score=64.45 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++..++|+||||+||||++..+|..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999998888764
No 363
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.0026 Score=60.12 Aligned_cols=90 Identities=23% Similarity=0.343 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc----------------c-----ccHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV----------------T-----SGVKDVRDAV 205 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~----------------~-----~~~~~i~~~~ 205 (558)
..+...++.+ ..++|.||+|+||||++++++..+..+...+.+... . .....+.+++
T Consensus 16 ~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 16 AYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 3445555544 679999999999999999999887633333322110 0 0112233333
Q ss_pred HHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE
Q 008664 206 EDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246 (558)
Q Consensus 206 ~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i 246 (558)
..+.+ ..+.+++++|+-. .+.. .+++....|..
T Consensus 94 ~~~lR-----~~pd~i~igEir~--~ea~-~~~~a~~tGh~ 126 (186)
T cd01130 94 RSALR-----MRPDRIIVGEVRG--GEAL-DLLQAMNTGHP 126 (186)
T ss_pred HHHhc-----cCCCEEEEEccCc--HHHH-HHHHHHhcCCC
Confidence 33322 3678999999964 3443 35666666665
No 364
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.03 E-value=0.0096 Score=62.78 Aligned_cols=97 Identities=22% Similarity=0.391 Sum_probs=65.8
Q ss_pred CceEEEEeCCccCC---HH-----HHHHHHhhHhc---C---cEEEEeccCCC----CCCCC--cHHhhccc--------
Q 008664 217 KRTVLFVDEVHRFN---KS-----QQDSFLPVIED---G---SIVFIGATTEN----PSFHL--ITPLLSRC-------- 268 (558)
Q Consensus 217 ~~~il~IDEid~l~---~~-----~~~~Ll~~le~---~---~iilI~att~n----~~~~l--~~aL~sR~-------- 268 (558)
++-+|+|||+..+- .+ ..+.|++++++ | .+-++++.|.. ...-+ -++|.+|.
T Consensus 239 ~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~ 318 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADD 318 (416)
T ss_pred CceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccc
Confidence 56799999998662 22 35677788765 2 34444444431 11112 35666653
Q ss_pred -------ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh
Q 008664 269 -------RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN 318 (558)
Q Consensus 269 -------~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~ 318 (558)
-+|.+.|++.+++..++.++..-+...+ .....++++.+..+++.
T Consensus 319 ~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~-----~~~~~v~d~~l~~~~~~ 370 (416)
T PF10923_consen 319 GFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAY-----GYESRVDDEELKAFAQH 370 (416)
T ss_pred cccCccCceecCCCCCHHHHHHHHHHHHHHHHhhC-----CCCCCCCHHHHHHHHHH
Confidence 2688999999999999999888766665 23478899999988876
No 365
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.02 E-value=0.0044 Score=56.41 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|+||+|||||||.+.+|.-..
T Consensus 30 e~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccC
Confidence 4689999999999999999998875
No 366
>PRK13948 shikimate kinase; Provisional
Probab=97.01 E-value=0.0081 Score=56.47 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..+++|.|.+|+||||+++.+|+.++ ..|+..+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg--~~~iD~D~ 43 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM--LHFIDTDR 43 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC--CCEEECCH
Confidence 36799999999999999999999999 88887764
No 367
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.00 E-value=0.001 Score=80.40 Aligned_cols=136 Identities=19% Similarity=0.293 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHH------------hhhhc
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARK------------LRVKS 215 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~------------~~~~~ 215 (558)
.+.+++..++ .++||-||.|+|||+++..+|+..+ ..+++++-... .++++.+..... .....
T Consensus 431 ~~~~a~~~~~-~pillqG~tssGKtsii~~la~~~g--~~~vrinnheh--td~qeyig~y~~~~~g~l~freg~LV~Al 505 (1856)
T KOG1808|consen 431 DLARAISSGK-FPILLQGPTSSGKTSIIKELARATG--KNIVRINNHEH--TDLQEYIGTYVADDNGDLVFREGVLVQAL 505 (1856)
T ss_pred HHHHHHhcCC-CCeEEecCcCcCchhHHHHHHHHhc--cCceehhcccc--chHHHHHHhhhcCCCCCeeeehhHHHHHH
Confidence 3444444443 4799999999999999999999999 77777764322 112222221000 00112
Q ss_pred CCceEEEEeCCccCCHHHHHHHHhhHhcCc-E------E--------EEeccCCCCC------CCCcHHhhcccceeecc
Q 008664 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-I------V--------FIGATTENPS------FHLITPLLSRCRVLTLN 274 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~~~~~Ll~~le~~~-i------i--------lI~att~n~~------~~l~~aL~sR~~~i~~~ 274 (558)
.++..+|+||++....+..++|.++++..+ + . ++++| .|+. ..+..+|++|+..++|.
T Consensus 506 r~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfat-qn~~~~y~grk~lsRa~~~rf~e~~f~ 584 (1856)
T KOG1808|consen 506 RNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFAT-QNPPGTYGGRKILSRALRNRFIELHFD 584 (1856)
T ss_pred HhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhh-ccCccccchhhhhhhcccccchhhhhh
Confidence 367899999999999999999999997721 1 1 23333 3443 23456788888888888
Q ss_pred CCCHHHHHHHHHHHH
Q 008664 275 PLKPHDVEILLKRAV 289 (558)
Q Consensus 275 ~l~~~~i~~iL~~~l 289 (558)
...++++..++...+
T Consensus 585 ~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 585 DIGEEELEEILEHRC 599 (1856)
T ss_pred hcCchhhhhhhcccc
Confidence 888887777776654
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.99 E-value=0.0067 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l 182 (558)
++|.|+||+||||+++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 369
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.97 E-value=0.0044 Score=57.20 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=49.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc---H-HHH--------------HHHHHHHHHhhhhcCCceE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG---V-KDV--------------RDAVEDARKLRVKSNKRTV 220 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~---~-~~i--------------~~~~~~~~~~~~~~~~~~i 220 (558)
..+.|.||+|+|||||.+.|+.......--+.++..... . ... ++.+.-++. ...++.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara---l~~~p~i 103 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA---LARNARL 103 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH---HhcCCCE
Confidence 468999999999999999999876532222333322111 1 001 111111111 3347899
Q ss_pred EEEeCCc-cCCHHHHHHHHhhHh
Q 008664 221 LFVDEVH-RFNKSQQDSFLPVIE 242 (558)
Q Consensus 221 l~IDEid-~l~~~~~~~Ll~~le 242 (558)
+++||-- .++......+...+.
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHH
Confidence 9999986 577777776666664
No 370
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.97 E-value=0.0019 Score=75.64 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=61.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHH-----------HHHHHHHHhhhhcCCceEEEEeCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVR-----------DAVEDARKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~-----------~~~~~~~~~~~~~~~~~il~IDEi 226 (558)
+..+|.|++||||||+.+.+...+. ....++-+..+..-...+. .++..............||||||+
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEA 477 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEA 477 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECc
Confidence 5689999999999999999987653 1255554433222122221 111111000011235689999999
Q ss_pred ccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 227 HRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 227 d~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.+++......|+..++. .++++||-+.
T Consensus 478 sMv~~~~m~~Ll~~~~~~garvVLVGD~~ 506 (1102)
T PRK13826 478 GMVASRQMALFVEAVTRAGAKLVLVGDPE 506 (1102)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEECCHH
Confidence 99999999999998874 5688887654
No 371
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.97 E-value=0.0063 Score=54.92 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec------cc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCc-cCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA------VT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVH-RFN 230 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~------~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid-~l~ 230 (558)
..+.|.||+|+|||||+++|+.......--+.++. .. .+.... +.+.-++. ...++.++++||-. .++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~-~rv~lara---l~~~p~illlDEP~~~LD 102 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEK-MRLALAKL---LLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHH-HHHHHHHH---HhcCCCEEEEeCCccCCC
Confidence 46889999999999999999988752211121111 00 111111 22222222 23478899999996 678
Q ss_pred HHHHHHHHhhHhcCcEEEEecc
Q 008664 231 KSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 231 ~~~~~~Ll~~le~~~iilI~at 252 (558)
......|...+.+-...+|.+|
T Consensus 103 ~~~~~~l~~~l~~~~~til~~t 124 (144)
T cd03221 103 LESIEALEEALKEYPGTVILVS 124 (144)
T ss_pred HHHHHHHHHHHHHcCCEEEEEE
Confidence 8888888887765333444444
No 372
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0014 Score=68.34 Aligned_cols=39 Identities=41% Similarity=0.751 Sum_probs=37.4
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++||.+||||...+.|||-.+|++..+.|++|+|.|.-.
T Consensus 562 I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdD 600 (749)
T COG5207 562 IRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDD 600 (749)
T ss_pred HHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccC
Confidence 579999999999999999999999999999999999977
No 373
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.94 E-value=0.00077 Score=61.19 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+++|+|+||+||||+++.+++.++ ..++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~--~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG--LPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC--CCEEEch
Confidence 489999999999999999999998 7777655
No 374
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.94 E-value=0.0036 Score=67.32 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecc
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAV 194 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~ 194 (558)
..|-+.+..+-. ..++|+|+||+|||+++..++.... ....++.++..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 445555544432 4689999999999999999987663 22455666543
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0042 Score=64.77 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|.||+|+||||++..|+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999864
No 376
>PF13479 AAA_24: AAA domain
Probab=96.93 E-value=0.0016 Score=63.05 Aligned_cols=64 Identities=23% Similarity=0.480 Sum_probs=40.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--------------cHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--------------GVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
..++|||+||+|||+++..+ + +.-++.+..... ...++.+.+..... ......+|+||
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~---~~~~y~tiVID 75 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEE---DEADYDTIVID 75 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHh---ccCCCCEEEEE
Confidence 46999999999999999888 2 233343333211 33444554444322 23478899999
Q ss_pred CCccCC
Q 008664 225 EVHRFN 230 (558)
Q Consensus 225 Eid~l~ 230 (558)
-++.+-
T Consensus 76 sis~~~ 81 (213)
T PF13479_consen 76 SISWLE 81 (213)
T ss_pred CHHHHH
Confidence 998763
No 377
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.92 E-value=0.0079 Score=61.71 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHh---CCCceEEEEeccc--------------ccHHHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLSAVT--------------SGVKDVRDAVEDAR 209 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l---~~~~~~i~l~~~~--------------~~~~~i~~~~~~~~ 209 (558)
..|..++..+ .++++.|++|+||||++++++..+ .....++.+.... .....+.+++..+.
T Consensus 139 ~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL 216 (319)
T PRK13894 139 EAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL 216 (319)
T ss_pred HHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh
Confidence 3444455543 789999999999999999999874 2222232221100 01123445555543
Q ss_pred HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEe
Q 008664 210 KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIG 250 (558)
Q Consensus 210 ~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~ 250 (558)
+ ..+..|++.|+-. .+.. .+++.+..|..-.++
T Consensus 217 R-----~~PD~IivGEiR~--~Ea~-~~l~A~~tGh~G~~t 249 (319)
T PRK13894 217 R-----MRPDRILVGEVRG--PEAL-DLLMAWNTGHEGGAA 249 (319)
T ss_pred c-----CCCCEEEEeccCC--HHHH-HHHHHHHcCCCceEE
Confidence 3 3789999999974 3444 467888887653333
No 378
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.91 E-value=0.0074 Score=57.97 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=27.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVT 195 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~ 195 (558)
..++|+||||+|||+++..++.... .....+.++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5689999999999999999886652 224566666543
No 379
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.91 E-value=0.0067 Score=58.64 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
+.++|+||.|+||||+.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5599999999999999999984
No 380
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.91 E-value=0.0034 Score=65.03 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++....+|+||||||||||++.+++.+.
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4446789999999999999999999875
No 381
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.91 E-value=0.0015 Score=62.36 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=23.5
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccC
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATT 253 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att 253 (558)
...+|||||++.+++.+...++.-+.+ .+++++|-..
T Consensus 119 ~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp -SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE---
T ss_pred cceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCce
Confidence 468999999999999988887776655 6677777553
No 382
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.015 Score=53.43 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEe
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLS 192 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~ 192 (558)
..-+......+...++|+|.+|+||||+|.++.+.+.. ....+.++
T Consensus 12 ~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 12 KQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 44444445555568999999999999999999999852 24444444
No 383
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.90 E-value=0.003 Score=59.92 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=27.0
Q ss_pred CceEEEEeCCc-cCCHHHHHHHHhhHhc---CcEEEEeccCC
Q 008664 217 KRTVLFVDEVH-RFNKSQQDSFLPVIED---GSIVFIGATTE 254 (558)
Q Consensus 217 ~~~il~IDEid-~l~~~~~~~Ll~~le~---~~iilI~att~ 254 (558)
++.++++||.- .|+++.....|.+|.+ ...++|+.|.+
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE 195 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence 78999999997 5688877777777754 33555555643
No 384
>PRK07261 topology modulation protein; Provisional
Probab=96.90 E-value=0.00086 Score=62.50 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=27.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.++|.|+||+||||+|+.|++.++ .+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~--~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN--CPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC--CCeEecCC
Confidence 389999999999999999999987 66665543
No 385
>PRK14532 adenylate kinase; Provisional
Probab=96.90 E-value=0.00088 Score=63.30 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=26.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
+++|.||||+||||+++.||+.++ ..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g--~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG--MVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CeEEeC
Confidence 489999999999999999999988 666654
No 386
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.037 Score=60.63 Aligned_cols=189 Identities=24% Similarity=0.308 Sum_probs=111.1
Q ss_pred HHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 153 VCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 153 i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
........++++||||+|||++++.+++. . ..+..++.... ....++.++..+... .++++++||
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~ii~~d~ 84 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-G--AEFLSINGPEILSKYVGESELRLRELFEEAEKL-----APSIIFIDE 84 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-c--CcccccCcchhhhhhhhHHHHHHHHHHHHHHHh-----CCCeEeech
Confidence 33344578999999999999999999998 4 33344443322 345667777777654 448999999
Q ss_pred CccCCHH-----------HHHHHHhhHhc---CcEEEEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHH
Q 008664 226 VHRFNKS-----------QQDSFLPVIED---GSIVFIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRA 288 (558)
Q Consensus 226 id~l~~~-----------~~~~Ll~~le~---~~iilI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~ 288 (558)
+|.+.+. ....|+..++. +.+++++.| |....+++++++ |+ ..+.+..++......++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 162 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGAT--NRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIH 162 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeec--CCccccChhHhCccccceeeecCCCCHHHHHHHHHHH
Confidence 9987542 34456665554 346666644 555567766665 34 35566666665555555544
Q ss_pred HHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH-HHHHHhcccCCccchhhhhccccCCCCCCCccccCH
Q 008664 289 VDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE-ISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTL 367 (558)
Q Consensus 289 l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le-~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~ 367 (558)
... ...-.+..+..++..+.|....-+..+. .+......+. . ........++.
T Consensus 163 ~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~-~-------------~~~~~~~~~~~ 216 (494)
T COG0464 163 TRL------------MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRA-I-------------DLVGEYIGVTE 216 (494)
T ss_pred Hhc------------CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhh-h-------------ccCcccccccH
Confidence 322 1111155677788877765544444433 3333322210 0 00001245888
Q ss_pred HHHHHHHhhc
Q 008664 368 DDAKEAFQCK 377 (558)
Q Consensus 368 e~v~~~l~~~ 377 (558)
++..+.+...
T Consensus 217 ~~~~~~l~~~ 226 (494)
T COG0464 217 DDFEEALKKV 226 (494)
T ss_pred HHHHHHHHhc
Confidence 8888888774
No 387
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.89 E-value=0.0061 Score=64.28 Aligned_cols=104 Identities=14% Similarity=0.267 Sum_probs=63.1
Q ss_pred ccccccccCCchHHHHHHHHcCCC------------CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--cH--
Q 008664 135 DVVGQDHLLSPNSLLRSAVCSNRL------------PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--GV-- 198 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~~~~------------~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--~~-- 198 (558)
.+.|+.++. +.+.-++-.+.. -++||.|.|||.|+.|.+-+-+-.. .-++.-....+ |.
T Consensus 332 SIfG~~DiK---kAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP--IaVYTSGKGSSAAGLTA 406 (729)
T KOG0481|consen 332 SIFGHEDIK---KAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP--IAVYTSGKGSSAAGLTA 406 (729)
T ss_pred hhcCchhHH---HHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc--eEEEecCCCccccccee
Confidence 366777775 555555544321 4799999999999999998877665 33332211000 10
Q ss_pred HH-----HHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc
Q 008664 199 KD-----VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS 245 (558)
Q Consensus 199 ~~-----i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~ 245 (558)
.- -|+++-+-... ....++|+.|||+|.|..+..-++...||..+
T Consensus 407 SV~RD~~tReFylEGGAM--VLADgGVvCIDEFDKMre~DRVAIHEAMEQQT 456 (729)
T KOG0481|consen 407 SVIRDPSTREFYLEGGAM--VLADGGVVCIDEFDKMREDDRVAIHEAMEQQT 456 (729)
T ss_pred eEEecCCcceEEEecceE--EEecCCEEEeehhhccCchhhhHHHHHHHhhh
Confidence 00 01110000000 12367899999999999888888888888743
No 388
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.89 E-value=0.0067 Score=56.82 Aligned_cols=81 Identities=22% Similarity=0.134 Sum_probs=48.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCc-cC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVH-RF 229 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid-~l 229 (558)
..+.|.||.|+|||||++.|+.......--+.++.... -...-++.+.-++. ...++.++++||-- .+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~lara---l~~~p~lllLDEPts~L 102 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAA---LLRNATFYLFDEPSAYL 102 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHH---HhcCCCEEEEECCcccC
Confidence 56889999999999999999987652222222221100 00111222222322 23478999999997 56
Q ss_pred CHHHHHHHHhhHh
Q 008664 230 NKSQQDSFLPVIE 242 (558)
Q Consensus 230 ~~~~~~~Ll~~le 242 (558)
+...+..+...+.
T Consensus 103 D~~~~~~l~~~l~ 115 (177)
T cd03222 103 DIEQRLNAARAIR 115 (177)
T ss_pred CHHHHHHHHHHHH
Confidence 7777666666553
No 389
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.85 E-value=0.0024 Score=57.33 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=27.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
++|.|+||+||||+|+.|++.++ .+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~--~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG--LPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--Cceeccc
Confidence 68999999999999999999998 7777665
No 390
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.84 E-value=0.00099 Score=62.54 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=25.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
++|+||||+||||+++.|++.++ ...+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~--~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG--FTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEEC
Confidence 78999999999999999999988 655554
No 391
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.00098 Score=60.16 Aligned_cols=28 Identities=39% Similarity=0.683 Sum_probs=25.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
+-+.|||||||||+++.||+.++ ++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g--l~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG--LKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC--Cceee
Confidence 67899999999999999999999 77764
No 392
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0086 Score=54.74 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=50.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc------------------cHHHHHHHHHHHHHhhhhcCCceE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS------------------GVKDVRDAVEDARKLRVKSNKRTV 220 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~i 220 (558)
..+.|.||+|+||||++++|+..+....--+.++.... +..+ +..+.-++. ....+.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~---l~~~~~i 101 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARA---LLLNPDL 101 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHH---HhcCCCE
Confidence 46899999999999999999987753222233332211 0011 111111111 2346789
Q ss_pred EEEeCCc-cCCHHHHHHHHhhHhc
Q 008664 221 LFVDEVH-RFNKSQQDSFLPVIED 243 (558)
Q Consensus 221 l~IDEid-~l~~~~~~~Ll~~le~ 243 (558)
+++||.. .++......|...+.+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999997 6777777777666643
No 393
>PRK14530 adenylate kinase; Provisional
Probab=96.82 E-value=0.0012 Score=63.94 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=27.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
+.++|.||||+||||+++.|++.++ ..++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG--VEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC--CeEEec
Confidence 4699999999999999999999998 777644
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.00084 Score=61.35 Aligned_cols=30 Identities=40% Similarity=0.645 Sum_probs=25.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.++++|.|||||||+++.|+ .++ +..+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg--~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG--YKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC--CceeeHH
Confidence 48999999999999999999 888 7766554
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.0092 Score=62.22 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+||||++..||..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.80 E-value=0.0077 Score=61.72 Aligned_cols=94 Identities=26% Similarity=0.352 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEeccc--------------ccHHHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVT--------------SGVKDVRDAVEDAR 209 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~--------------~~~~~i~~~~~~~~ 209 (558)
..|..++..+ .+++++|++|+||||+++++...+. .+..++.+-... .+.-....++..+.
T Consensus 135 ~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL 212 (323)
T PRK13833 135 SVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM 212 (323)
T ss_pred HHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh
Confidence 4455566544 5799999999999999999999872 222333322110 01123444444443
Q ss_pred HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEe
Q 008664 210 KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIG 250 (558)
Q Consensus 210 ~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~ 250 (558)
+ .++..|++.|+-. .+.. .+++.+..|....++
T Consensus 213 R-----~~PD~IivGEiRg--~ea~-~~l~a~~tGh~G~it 245 (323)
T PRK13833 213 R-----LRPDRIIVGEVRD--GAAL-TLLKAWNTGHPGGVT 245 (323)
T ss_pred C-----CCCCEEEEeecCC--HHHH-HHHHHHcCCCCceEE
Confidence 3 3788999999964 3444 467778777653333
No 397
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.79 E-value=0.011 Score=57.87 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=23.1
Q ss_pred CeEEEEcCCCchHHHHHHHH-HHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAI-VNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~l-a~~l~~~~~~i~l~ 192 (558)
..+++.||||+|||+++..+ +..+......+.++
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 57999999999999997544 44433224444444
No 398
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.79 E-value=0.0076 Score=61.62 Aligned_cols=108 Identities=15% Similarity=0.262 Sum_probs=64.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHH-HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRD-AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSF 237 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~-~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~L 237 (558)
..++|+|+.|+||||+.+.|...++ .......++. ....... -+.-+ ....+.++++||+..-.....+.|
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G--~~~~~~~~~~-~~~~~~~~~f~~a-----~l~gk~l~~~~E~~~~~~~~~~~l 148 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLG--DYATTAVASL-KMNEFQEHRFGLA-----RLEGKRAVIGDEVQKGYRDDESTF 148 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhC--hhhccCCcch-hhhhccCCCchhh-----hhcCCEEEEecCCCCCccccHHhh
Confidence 5689999999999999999988887 3322211111 1111110 01111 122567999999974333333455
Q ss_pred HhhHhcC----------------cEEEEeccCCCCCC-CCcHHhhcccceeecc
Q 008664 238 LPVIEDG----------------SIVFIGATTENPSF-HLITPLLSRCRVLTLN 274 (558)
Q Consensus 238 l~~le~~----------------~iilI~att~n~~~-~l~~aL~sR~~~i~~~ 274 (558)
..+.... ...+|++|+..|.. ..+.++.+|+.+|.|+
T Consensus 149 K~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~vi~f~ 202 (304)
T TIGR01613 149 KSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRIIPFT 202 (304)
T ss_pred hhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeEEEEecc
Confidence 5555321 24578888766654 2457899999888875
No 399
>PRK04040 adenylate kinase; Provisional
Probab=96.79 E-value=0.0026 Score=60.18 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=26.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|+|+||+||||+++.+++.+..+..++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 358999999999999999999998312666544
No 400
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.78 E-value=0.0013 Score=59.70 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
++|+|+||+||||+|+.+++.++ ..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~--~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG--APFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC--CEEEeC
Confidence 78999999999999999999987 666543
No 401
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.77 E-value=0.004 Score=63.43 Aligned_cols=90 Identities=23% Similarity=0.354 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecc---------------cccHHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAV---------------TSGVKDVRDAVEDA 208 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~---------------~~~~~~i~~~~~~~ 208 (558)
..|..+++.+ .+++++||+|+||||+++++.+.+.. ...++.+... ..+...+..++..+
T Consensus 123 ~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a 200 (299)
T TIGR02782 123 DVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT 200 (299)
T ss_pred HHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH
Confidence 4556666543 68999999999999999999988731 1222222110 01111344555544
Q ss_pred HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE
Q 008664 209 RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI 246 (558)
Q Consensus 209 ~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i 246 (558)
.+ ..+..|++.|+-. .+.. .+++.+..|..
T Consensus 201 LR-----~~pD~iivGEiR~--~ea~-~~l~a~~tGh~ 230 (299)
T TIGR02782 201 LR-----LRPDRIIVGEVRG--GEAL-DLLKAWNTGHP 230 (299)
T ss_pred hc-----CCCCEEEEeccCC--HHHH-HHHHHHHcCCC
Confidence 33 3788999999964 3443 45777777764
No 402
>PRK06217 hypothetical protein; Validated
Probab=96.77 E-value=0.0013 Score=62.06 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=28.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.++|.|+||+||||+++.|++.++ .+++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD--IPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCc
Confidence 489999999999999999999998 77776653
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0081 Score=58.40 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
--+.|.||+|||||||.++||....
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3488999999999999999998765
No 404
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.73 E-value=0.018 Score=58.01 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
++|.||+|+|||+++..+++.++ ..++.++.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~--~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN--AEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC--CcEEEech
Confidence 78999999999999999999988 66665543
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.71 E-value=0.0055 Score=67.07 Aligned_cols=38 Identities=16% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCceEEEEeCCc-cCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 216 NKRTVLFVDEVH-RFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 216 ~~~~il~IDEid-~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.+++++||||+- .++.+.++.|.+.+++ ..+++|..+.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 489999999995 6788999999999988 6777776653
No 406
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.71 E-value=0.013 Score=54.51 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=25.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
++++|++|+|||++|..++...+ .+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~--~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG--GPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CCeEEEEcc
Confidence 68999999999999999998755 455555443
No 407
>PRK14531 adenylate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=61.44 Aligned_cols=31 Identities=29% Similarity=0.611 Sum_probs=26.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|+||||+||||+++.||+.++ ..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG--LRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCeEec
Confidence 3589999999999999999999998 666554
No 408
>PRK13808 adenylate kinase; Provisional
Probab=96.70 E-value=0.06 Score=55.26 Aligned_cols=30 Identities=33% Similarity=0.577 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|+||||+||||+++.|++.++ +.++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg--l~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG--IVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cceecc
Confidence 489999999999999999999988 655554
No 409
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.69 E-value=0.0013 Score=57.55 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l 182 (558)
++|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 410
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.68 E-value=0.041 Score=54.80 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=94.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHH---------------HHHHHHHHHHHhhhhcCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVK---------------DVRDAVEDARKLRVKSNKRTVLFV 223 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~---------------~i~~~~~~~~~~~~~~~~~~il~I 223 (558)
....+||-+|.|||+.++.+++..+ ....+..+....... .+...+...... ......+|++
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~p-~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~--l~~~~~~iiv 171 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSNP-NALLIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIR--LRDTVRLIIV 171 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccCc-cceeecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHH--HccCcceeee
Confidence 4689999999999999999998765 122222222221111 112222222111 2456789999
Q ss_pred eCCccCCHHHHHHHHhhHhcCc--EEEEeccCCCCCCCC------cHHhhcccce---eeccCCCHHHHHHHHHHHHHhH
Q 008664 224 DEVHRFNKSQQDSFLPVIEDGS--IVFIGATTENPSFHL------ITPLLSRCRV---LTLNPLKPHDVEILLKRAVDDV 292 (558)
Q Consensus 224 DEid~l~~~~~~~Ll~~le~~~--iilI~att~n~~~~l------~~aL~sR~~~---i~~~~l~~~~i~~iL~~~l~~~ 292 (558)
||+++|.....+.|....++.. ++++|.. -....+ ...+.+|..+ +...-.+.++...+....+
T Consensus 172 DEA~~L~~~ale~lr~i~d~~Gi~~vLvG~p--rL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l--- 246 (297)
T COG2842 172 DEADRLPYRALEELRRIHDKTGIGVVLVGMP--RLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVL--- 246 (297)
T ss_pred ehhhccChHHHHHHHHHHHhhCceEEEecCh--HHHhccccchHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhC---
Confidence 9999999999999999888844 4455432 111111 1123333211 1111111133333333322
Q ss_pred hcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc
Q 008664 293 NNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339 (558)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
.. .+++.+..+.....|++|.+-.++..+...+..
T Consensus 247 ----------~~--~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a~~ 281 (297)
T COG2842 247 ----------PT--EDELVLMQVIKETEGNIRRLDKILAGAVGTARS 281 (297)
T ss_pred ----------cc--chHHHHHHHHHhcchhHhHHHHHHhhhhhhhhh
Confidence 11 567778888888999999999999888777665
No 411
>PTZ00293 thymidine kinase; Provisional
Probab=96.68 E-value=0.0075 Score=57.68 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=46.3
Q ss_pred eEEEEcCCCchHHH-HHHHHHHHhCCCceEEEEecccc-------------c-------HHHHHHHHHHHHHhhhhcCCc
Q 008664 160 SIIFWGPPGTGKTT-LAKAIVNSVAVSYKFVCLSAVTS-------------G-------VKDVRDAVEDARKLRVKSNKR 218 (558)
Q Consensus 160 ~~LL~GppGtGKTt-La~~la~~l~~~~~~i~l~~~~~-------------~-------~~~i~~~~~~~~~~~~~~~~~ 218 (558)
--+++||-|+|||| |.+.+.+........+.+..... + ..+..+++... ...
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~-------~~~ 78 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA-------KNY 78 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc-------cCC
Confidence 35889999999999 99988876542233333322100 0 11122222221 256
Q ss_pred eEEEEeCCccCCHHHHHHHHhhHhc-CcEEEE
Q 008664 219 TVLFVDEVHRFNKSQQDSFLPVIED-GSIVFI 249 (558)
Q Consensus 219 ~il~IDEid~l~~~~~~~Ll~~le~-~~iilI 249 (558)
.+|+|||++.+. + ...|...+.+ +..+++
T Consensus 79 dvI~IDEaQFf~-~-i~~~~~~l~~~g~~Viv 108 (211)
T PTZ00293 79 DVIAIDEGQFFP-D-LVEFSEAAANLGKIVIV 108 (211)
T ss_pred CEEEEEchHhhH-h-HHHHHHHHHHCCCeEEE
Confidence 899999999994 3 3344455544 444433
No 412
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.67 E-value=0.0014 Score=60.29 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
++|.||+|+||||+++.+++.++ ..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeC
Confidence 47899999999999999999998 666543
No 413
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.67 E-value=0.0016 Score=61.68 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=26.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
++|+||||+||||+++.|++.++ ..++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEECc
Confidence 79999999999999999999988 6666543
No 414
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.67 E-value=0.011 Score=58.64 Aligned_cols=23 Identities=39% Similarity=0.751 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 415
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.66 E-value=0.026 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++++|+||+|||+++..++..
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 67899999999999999998654
No 416
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.65 E-value=0.0069 Score=63.34 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEeccc-----------------c--cHHHHHHHHHHHHHhhhhc
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVT-----------------S--GVKDVRDAVEDARKLRVKS 215 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~-----------------~--~~~~i~~~~~~~~~~~~~~ 215 (558)
...++++||+|+||||+++++.+.+. .+...+.+.... . ....+...+..+ ..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~a-----LR 223 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLA-----LR 223 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHh-----hc
Confidence 36799999999999999999998873 122333332110 0 111222233322 22
Q ss_pred CCceEEEEeCCccCCHHHHHHHHhhHhcCcEE
Q 008664 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~~~~~Ll~~le~~~ii 247 (558)
..+.+|++.|+- +.+..+.+++..+.|..+
T Consensus 224 ~~PD~I~vGEiR--d~et~~~al~aa~TGH~v 253 (372)
T TIGR02525 224 RAPKIIGVGEIR--DLETFQAAVLAGQSGHFC 253 (372)
T ss_pred cCCCEEeeCCCC--CHHHHHHHHHHHhcCCcE
Confidence 478999999997 456677778888888873
No 417
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0046 Score=63.70 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+.|.||+||||||+.++||-.-.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999998765
No 418
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.64 E-value=0.003 Score=61.11 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=17.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998776666665
No 419
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.64 E-value=0.0021 Score=60.43 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.+.++|.||||+||||+++.+++.++ ...+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~ 34 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLST 34 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeH
Confidence 35689999999999999999999987 555443
No 420
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.63 E-value=0.016 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++|.|+||+||||+|+.|++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999998
No 421
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.62 E-value=0.0088 Score=60.98 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=27.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..++|.||+|+|||++|..||+.++ ..++..++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~--~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLN--GEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCC--CcEEeccc
Confidence 4689999999999999999999987 55554443
No 422
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.60 E-value=0.013 Score=55.16 Aligned_cols=118 Identities=20% Similarity=0.329 Sum_probs=60.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---cHHH-------HHHHHHHHHHhhhhcCCceEEEEeCCcc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---GVKD-------VRDAVEDARKLRVKSNKRTVLFVDEVHR 228 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---~~~~-------i~~~~~~~~~~~~~~~~~~il~IDEid~ 228 (558)
..++|+||+|+||+|+++.|.+.....+.++....+.. ++.+ -++-++.... .+.++--.+.+.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~------~g~fve~~~~~g 76 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIK------SGLFLEWGEYSG 76 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHH------cCCeEEEEEEcC
Confidence 46999999999999999999998631122222211111 1100 0112222211 233443333332
Q ss_pred -CCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcc---cceeeccCCCHHHHHHHHHH
Q 008664 229 -FNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSR---CRVLTLNPLKPHDVEILLKR 287 (558)
Q Consensus 229 -l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR---~~~i~~~~l~~~~i~~iL~~ 287 (558)
.-......+...++.+..+++-.+.. . ...+... ..+|.+.|++.+.+.+.+..
T Consensus 77 ~~YGt~~~~i~~~~~~~~~~ild~~~~-~----~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~ 134 (184)
T smart00072 77 NYYGTSKETIRQVAEQGKHCLLDIDPQ-G----VKQLRKAQLYPIVIFIAPPSSEELERRLRG 134 (184)
T ss_pred cCcccCHHHHHHHHHcCCeEEEEECHH-H----HHHHHHhCCCcEEEEEeCcCHHHHHHHHHh
Confidence 22233445566666776655543311 1 1122222 24677888888877776664
No 423
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.58 E-value=0.0019 Score=63.10 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=28.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..++|.||||+||||+++.||+.++ ..++.++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEEECCh
Confidence 3499999999999999999999998 77776653
No 424
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.57 E-value=0.018 Score=52.64 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=58.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh---CCCceEEEEeccc--c---------------------------cHH---HHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLSAVT--S---------------------------GVK---DVRD 203 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l---~~~~~~i~l~~~~--~---------------------------~~~---~i~~ 203 (558)
.-+.+|+++|.||||+|-.+|-.. +....++.+-... . ... ..++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 347889999999999999888664 2223333332221 0 111 1223
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCCH---HHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhccc
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFNK---SQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRC 268 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~~---~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~ 268 (558)
.++.+.... ..+...+|||||+-..-. -..+.++.++++ ...-+|.+.. + .++.|+.+.
T Consensus 83 ~~~~a~~~~-~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr-~----~p~~l~e~A 146 (159)
T cd00561 83 GWAFAKEAI-ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGR-N----APKELIEAA 146 (159)
T ss_pred HHHHHHHHH-hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECC-C----CCHHHHHhC
Confidence 333333332 456789999999975522 234567777776 3344554432 2 344555554
No 425
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.011 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+=|.||+|||||||+++++....
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Confidence 5688999999999999999997654
No 426
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.55 E-value=0.017 Score=56.24 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=27.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAV 194 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~ 194 (558)
..++|+||||+|||+++..++...- ....++.++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4689999999999999999987552 22555555554
No 427
>PRK13764 ATPase; Provisional
Probab=96.55 E-value=0.0068 Score=66.96 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=23.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.++|++||||+||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999999886
No 428
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.54 E-value=0.0018 Score=60.43 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=23.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|+||+||||+|+.+++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999999987
No 429
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.54 E-value=0.005 Score=61.64 Aligned_cols=82 Identities=24% Similarity=0.326 Sum_probs=43.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccc-----------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVT-----------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEi 226 (558)
+-++|+|-||+||||+|+.|++.+. ....++.++... ..++.+|..+...... ..++..|||+|+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r--~ls~~~iVI~Dd~ 79 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER--ALSKDTIVILDDN 79 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH--HHTT-SEEEE-S-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH--hhccCeEEEEeCC
Confidence 3489999999999999999999864 224444444211 1344555554444332 1235589999999
Q ss_pred ccCCHHHHHHHHhhHhc
Q 008664 227 HRFNKSQQDSFLPVIED 243 (558)
Q Consensus 227 d~l~~~~~~~Ll~~le~ 243 (558)
..+ ++..-.|..+-..
T Consensus 80 nYi-Kg~RYelyclAr~ 95 (270)
T PF08433_consen 80 NYI-KGMRYELYCLARA 95 (270)
T ss_dssp --S-HHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHH
Confidence 765 4455555555444
No 430
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.54 E-value=0.013 Score=56.13 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
..++|+||.|+||||+.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999993
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.54 E-value=0.013 Score=62.52 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+..++|+|++|+||||++..+|..+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46799999999999999999998774
No 432
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.54 E-value=0.0022 Score=60.93 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=26.6
Q ss_pred CceEEEEeCCccCCHHH-H-----HHHHhhHhc---CcEEEEeccCCCCCCCCcHHhhccc
Q 008664 217 KRTVLFVDEVHRFNKSQ-Q-----DSFLPVIED---GSIVFIGATTENPSFHLITPLLSRC 268 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~-~-----~~Ll~~le~---~~iilI~att~n~~~~l~~aL~sR~ 268 (558)
.+++|||||++.+-+.. . ...+.++.. ...-+|++| .++ ..+++.++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliT-Q~~-~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILIT-QSP-SQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEE-S-G-GGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEe-CCH-HHHhHHHHHHH
Confidence 67899999999763221 1 233355544 335555555 344 36788777655
No 433
>PRK06762 hypothetical protein; Provisional
Probab=96.51 E-value=0.0027 Score=58.57 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.-++|+|+||+||||+|+.+++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999986
No 434
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.51 E-value=0.0023 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l 182 (558)
+.+.|+||+||||+++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 435
>PRK14528 adenylate kinase; Provisional
Probab=96.51 E-value=0.0024 Score=60.37 Aligned_cols=31 Identities=39% Similarity=0.668 Sum_probs=26.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+++.||||+||||+++.+++.++ ..++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~--~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS--IPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCeeeC
Confidence 4589999999999999999999988 666554
No 436
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.51 E-value=0.043 Score=50.92 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecc
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAV 194 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~ 194 (558)
.+++.|+||+||||++..++..+.. ...+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 4789999999999999999987631 1445555543
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0024 Score=59.79 Aligned_cols=24 Identities=46% Similarity=0.902 Sum_probs=22.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.++|.||||+||||+|+.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999976
No 438
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.48 E-value=0.0028 Score=58.78 Aligned_cols=32 Identities=31% Similarity=0.599 Sum_probs=28.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+++|+|++|+||||+++.+|+.++ .+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG--YRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEcc
Confidence 4589999999999999999999999 7887654
No 439
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.027 Score=60.17 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=46.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccH---HHHHHHH-------------HHHHHhhhhcCCce
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGV---KDVRDAV-------------EDARKLRVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~---~~i~~~~-------------~~~~~~~~~~~~~~ 219 (558)
..++|.||+|+||||++..||..+. ....+..+++..... ..++..- .+............
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4789999999999999988887552 223444444432211 1111100 00011111223568
Q ss_pred EEEEeCCccCC--HHHHHHHHhhHh
Q 008664 220 VLFVDEVHRFN--KSQQDSFLPVIE 242 (558)
Q Consensus 220 il~IDEid~l~--~~~~~~Ll~~le 242 (558)
+||||...+.. ....+.|..+++
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 89999886653 344556666665
No 440
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.47 E-value=0.02 Score=59.30 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=67.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc----------------c-----ccHHHHHHHHHHHHHhhhhcCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV----------------T-----SGVKDVRDAVEDARKLRVKSNK 217 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~----------------~-----~~~~~i~~~~~~~~~~~~~~~~ 217 (558)
.++++.|++|+||||+.+++...+......+.+... . .+.-.+..++..+-+ .+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR-----~~ 253 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALR-----MR 253 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhc-----cC
Confidence 689999999999999999999887633222222110 0 011234445554433 37
Q ss_pred ceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHH
Q 008664 218 RTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRA 288 (558)
Q Consensus 218 ~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~ 288 (558)
+..|++.|+-. .+.. .+++.+..|....+++...|.. .....|+. ......++.+.+...+...
T Consensus 254 PD~IivGEiRg--~Ea~-~~l~a~~tGh~G~~tTiHA~s~----~~~~~RL~~l~~~~~~~~~~~~~~ia~a 318 (340)
T TIGR03819 254 PDRIVVGEVRG--AEVV-DLLAALNTGHDGGAGTLHANSP----ADVPARLEALGALGGLDREALHSQLAAA 318 (340)
T ss_pred CCeEEEeCcCc--HHHH-HHHHHHHcCCCceEEeeCCCCH----HHHHHHHHHHhhccCCCHHHHHHHHHHh
Confidence 88999999973 4554 4678888877644443322221 23334442 2223445555555444443
No 441
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.47 E-value=0.0028 Score=59.14 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=29.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.+++|.|++|+||||+++.+++.++ ..++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~--~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC--CcEEECCc
Confidence 4699999999999999999999998 77776654
No 442
>PRK02496 adk adenylate kinase; Provisional
Probab=96.47 E-value=0.0024 Score=60.12 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=26.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.||||+||||+++.|++.++ ...+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEEh
Confidence 489999999999999999999988 655544
No 443
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.46 E-value=0.015 Score=55.81 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|+||.|+||||+.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998743
No 444
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.003 Score=68.20 Aligned_cols=39 Identities=36% Similarity=0.702 Sum_probs=37.1
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
+.||+.||||.+-|+|||+.+||+..+.|.+|+++|.-.
T Consensus 575 i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdD 613 (763)
T KOG0944|consen 575 ISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDD 613 (763)
T ss_pred HHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccC
Confidence 579999999999999999999999999999999999866
No 445
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.44 E-value=0.019 Score=53.08 Aligned_cols=91 Identities=19% Similarity=0.336 Sum_probs=53.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec--------cc---c--c-HHHH------------HHHHHHHHHhh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA--------VT---S--G-VKDV------------RDAVEDARKLR 212 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~--------~~---~--~-~~~i------------~~~~~~~~~~~ 212 (558)
..+.|.||.|+|||||++.|+..+....--+.++. .. . + .+.+ ++.+.-++
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar--- 104 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR--- 104 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH---
Confidence 45899999999999999999988642111111110 00 0 0 0111 11111111
Q ss_pred hhcCCceEEEEeCCc-cCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 213 VKSNKRTVLFVDEVH-RFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 213 ~~~~~~~il~IDEid-~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
....++.++++||-- .++...+..+.+.+.+-...+|.+|
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivs 145 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVG 145 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEe
Confidence 123478999999997 5788888888888876334444444
No 446
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.029 Score=53.50 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+...+.|.|++|+||||+++.|+..+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999874
No 447
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.43 E-value=0.022 Score=53.02 Aligned_cols=25 Identities=40% Similarity=0.701 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.+.|+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999998764
No 448
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.023 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.+.|+....
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5699999999999999999998865
No 449
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.38 E-value=0.012 Score=62.68 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCc-eEEEEeccc----ccHH------HHHHHHHHHHHhhhhc
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY-KFVCLSAVT----SGVK------DVRDAVEDARKLRVKS 215 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~-~~i~l~~~~----~~~~------~i~~~~~~~~~~~~~~ 215 (558)
..+.+++... .+-+|++||+|+||||+...+.+.++... .++.+...- .|.. .+.--|..+-+.. ..
T Consensus 248 ~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~-LR 325 (500)
T COG2804 248 ARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAI-LR 325 (500)
T ss_pred HHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHH-hc
Confidence 4555555543 36789999999999999999999987222 232221100 0000 0000111111111 23
Q ss_pred CCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEE
Q 008664 216 NKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFI 249 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI 249 (558)
..+.||+|.||- +.+..+...+.-..|+.+|-
T Consensus 326 qDPDvImVGEIR--D~ETAeiavqAalTGHLVlS 357 (500)
T COG2804 326 QDPDVIMVGEIR--DLETAEIAVQAALTGHLVLS 357 (500)
T ss_pred cCCCeEEEeccC--CHHHHHHHHHHHhcCCeEee
Confidence 478999999996 34555666666677887663
No 450
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.37 E-value=0.022 Score=61.94 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEeccc------c-----c---HHHHHHHHHHHHHh
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVT------S-----G---VKDVRDAVEDARKL 211 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~------~-----~---~~~i~~~~~~~~~~ 211 (558)
..+..++... .+.++++||+|+||||+.+++.+.+.. ...++.+.... . + ...+...+..+
T Consensus 232 ~~l~~~~~~~-~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~--- 307 (486)
T TIGR02533 232 SRFERLIRRP-HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAI--- 307 (486)
T ss_pred HHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHH---
Confidence 4555555433 356899999999999999988887752 22333332100 0 0 01222233333
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEE
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVF 248 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iil 248 (558)
....+.+|+|.||-. .+.....++....|+.++
T Consensus 308 --LR~dPDvI~vGEiRd--~eta~~a~~aa~tGHlvl 340 (486)
T TIGR02533 308 --LRQDPDIIMVGEIRD--LETAQIAIQASLTGHLVL 340 (486)
T ss_pred --HhcCCCEEEEeCCCC--HHHHHHHHHHHHhCCcEE
Confidence 224789999999963 455566777777888754
No 451
>PRK13946 shikimate kinase; Provisional
Probab=96.37 E-value=0.0029 Score=59.68 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=29.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|.|.+|+||||+++.+|+.++ .+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg--~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG--LPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC--CCeECcC
Confidence 5799999999999999999999999 8887655
No 452
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.36 E-value=0.021 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999998865
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.36 E-value=0.003 Score=60.91 Aligned_cols=29 Identities=34% Similarity=0.660 Sum_probs=25.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
++|.||||+||||+++.|++.++ ...+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG--LPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CCeeeh
Confidence 78999999999999999999988 666554
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.35 E-value=0.015 Score=55.96 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|+||+|+|||||++.+.+.
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 56889999999999999999765
No 455
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.35 E-value=0.01 Score=69.59 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCchHHHHH-HHHHHHhCCCceEEEEeccccc-HHHHHHHHHHHHHh----------hhhcCCceEEEEe
Q 008664 157 RLPSIIFWGPPGTGKTTLA-KAIVNSVAVSYKFVCLSAVTSG-VKDVRDAVEDARKL----------RVKSNKRTVLFVD 224 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa-~~la~~l~~~~~~i~l~~~~~~-~~~i~~~~~~~~~~----------~~~~~~~~il~ID 224 (558)
..++++++||||+|||.|. -.+-.++. ..++.+|-+... ...+-.+++..... ++..-+..|||.|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~--~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELI--TEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhh--eeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 3478999999999999954 45555666 667666655442 22233444433222 1111245799999
Q ss_pred CCccCCHH-------HHHHHHhhHhc--------------CcEEEEeccCCCCCC-----CCcHHhhcccceeeccCCCH
Q 008664 225 EVHRFNKS-------QQDSFLPVIED--------------GSIVFIGATTENPSF-----HLITPLLSRCRVLTLNPLKP 278 (558)
Q Consensus 225 Eid~l~~~-------~~~~Ll~~le~--------------~~iilI~att~n~~~-----~l~~aL~sR~~~i~~~~l~~ 278 (558)
||+ |... ..-.|.++++. ..+++.|++ ||.. .....+.+|...+.+..|.-
T Consensus 1571 eIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gac--np~td~gRv~~~eRf~r~~v~vf~~ype~ 1647 (3164)
T COG5245 1571 EIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGAC--NPGTDEGRVKYYERFIRKPVFVFCCYPEL 1647 (3164)
T ss_pred ccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccC--CCCCCcccCccHHHHhcCceEEEecCcch
Confidence 998 4332 22234466655 236778887 5542 34567777776677777777
Q ss_pred HHHHHHHHHHHHh
Q 008664 279 HDVEILLKRAVDD 291 (558)
Q Consensus 279 ~~i~~iL~~~l~~ 291 (558)
..++.|....+..
T Consensus 1648 ~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1648 ASLRNIYEAVLMG 1660 (3164)
T ss_pred hhHHHHHHHHHHH
Confidence 7777777755543
No 456
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.34 E-value=0.026 Score=62.35 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.+.++|.|.+|+||||+.+.+|+.++ .+|+.++.
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~--~~fiD~D~ 39 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMR--LPFADADV 39 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhC--CCEEEchH
Confidence 36799999999999999999999999 99998875
No 457
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.34 E-value=0.68 Score=50.43 Aligned_cols=102 Identities=15% Similarity=0.226 Sum_probs=72.1
Q ss_pred ceEEEEeCCccCC--HHHHHHHHhhH---hc-CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHh
Q 008664 218 RTVLFVDEVHRFN--KSQQDSFLPVI---ED-GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 218 ~~il~IDEid~l~--~~~~~~Ll~~l---e~-~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
+.++++.|+|.+- +.....|.++. .. ++.++|.+. ...++..|.+-+.++.++-|+.+++..++......
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~~----~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~ 157 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIAS----ELNIPKELKDLITVLEFPLPTESEIKKELTRLIKS 157 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEcC----CCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHh
Confidence 6799999999883 33444444333 22 333333332 23678888887889999999999999999887654
Q ss_pred HhcccccccCCcccccChHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 008664 292 VNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD-ARVALNALEISA 334 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd-~R~~~~~Le~a~ 334 (558)
.++.++++.++.|++.+.|- .-.+.+.+..+.
T Consensus 158 -----------~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 158 -----------LNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred -----------cCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56778999999999998774 555666665543
No 458
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.33 E-value=0.034 Score=51.83 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
-+++.||+|.||||+.+.|.....
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc
Confidence 489999999999999999998875
No 459
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.31 E-value=0.0034 Score=60.75 Aligned_cols=30 Identities=37% Similarity=0.609 Sum_probs=26.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++++||||+||||+++.||+.++ ...+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG--IPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEEC
Confidence 389999999999999999999998 666654
No 460
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.30 E-value=0.013 Score=61.00 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEeccccc
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAVTSG 197 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~~~~ 197 (558)
.+.+.|.||+|+||||...-+|..+. ...-++.+++...|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 46799999999999986655655543 34556666665543
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.029 Score=54.47 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
..++|.||.|+||||+.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999987
No 462
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.30 E-value=0.012 Score=61.32 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=56.6
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC----CceEEEEeccc----------------c----cHHHHHH
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV----SYKFVCLSAVT----------------S----GVKDVRD 203 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~----~~~~i~l~~~~----------------~----~~~~i~~ 203 (558)
.+.+++.. ....++++||+|+||||+++++.+.+.. +..++.+.... . ....+..
T Consensus 125 ~~~~~~~~-~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~ 203 (358)
T TIGR02524 125 AIIDAIAP-QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAA 203 (358)
T ss_pred HHHHHHhc-cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHH
Confidence 34555543 3478999999999999999999988731 11222221100 0 0011222
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEE
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIV 247 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~ii 247 (558)
.+..+ ....+.++++.|+- +.+.....++..+.|..+
T Consensus 204 ~l~~a-----LR~~Pd~i~vGEiR--d~et~~~al~aa~tGh~v 240 (358)
T TIGR02524 204 GVRNA-----LRRKPHAILVGEAR--DAETISAALEAALTGHPV 240 (358)
T ss_pred HHHHH-----hccCCCEEeeeeeC--CHHHHHHHHHHHHcCCcE
Confidence 23222 22378899999985 556777788888888773
No 463
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.29 E-value=0.021 Score=61.61 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEec
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSA 193 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~ 193 (558)
..|-+.+..+-. ..++|+|+||+|||||+..++..... ...++.++.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 455555544433 46899999999999999998776531 134555554
No 464
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.28 E-value=0.017 Score=59.66 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=67.5
Q ss_pred HHHHHHHHc-CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 147 SLLRSAVCS-NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 147 ~~l~~~i~~-~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
..++.+++. .+.+.++|+|||.||||.++-.+.+.++ ..++.+..+.+.- . +.-.....|-+|||
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~--GkViSf~Ns~ShF---------W---LqPL~d~Ki~llDD 315 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK--GKVISFVNSKSHF---------W---LQPLADAKIALLDD 315 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT--SEEE-GGGTTSCG---------G---GGGGCT-SSEEEEE
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC--CEEEEecCCCCcc---------c---ccchhcCcEEEEcC
Confidence 556666654 3447899999999999999999999998 7776543222110 0 00123456889999
Q ss_pred CccCCHHHHH-HHHhhHhcCcE---------------EEEeccCCCCC-CCCcHHhhcccceeeccC
Q 008664 226 VHRFNKSQQD-SFLPVIEDGSI---------------VFIGATTENPS-FHLITPLLSRCRVLTLNP 275 (558)
Q Consensus 226 id~l~~~~~~-~Ll~~le~~~i---------------ilI~att~n~~-~~l~~aL~sR~~~i~~~~ 275 (558)
+-.-.=+-.+ -|.+.++...+ .++.+|+.+.. ..--.-|.||..++.|+.
T Consensus 316 AT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n 382 (432)
T PF00519_consen 316 ATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPN 382 (432)
T ss_dssp E-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S
T ss_pred CcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcCC
Confidence 8543222222 35566665322 24555554443 223467889998888864
No 465
>PLN02200 adenylate kinase family protein
Probab=96.28 E-value=0.004 Score=61.09 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=26.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ...+..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g--~~his~ 74 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFG--FKHLSA 74 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC--CeEEEc
Confidence 4589999999999999999999988 555443
No 466
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.27 E-value=0.022 Score=69.16 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEecccccHH----------HHHHHHHHHH--
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAVTSGVK----------DVRDAVEDAR-- 209 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~~~~~~----------~i~~~~~~~~-- 209 (558)
..+..++... -+.++|.|.+||||||+++.+...+. ....++-+..+..-.. .+..++....
T Consensus 842 ~Av~~iLts~-dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A~TIasfL~~~~~~ 920 (1623)
T PRK14712 842 AATRMILETS-DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQ 920 (1623)
T ss_pred HHHHHHHhCC-CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCchHhhHHHHhccccch
Confidence 3444444432 25699999999999999887765432 1133443332221111 1222222110
Q ss_pred --HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCC
Q 008664 210 --KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENP 256 (558)
Q Consensus 210 --~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~ 256 (558)
..........||||||+-+++......|+..++. .+++|||-+...+
T Consensus 921 ~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~ 971 (1623)
T PRK14712 921 QRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQ 971 (1623)
T ss_pred hhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcC
Confidence 0000012468999999999999999899998875 5788888664433
No 467
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.26 E-value=0.022 Score=57.99 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++.|||+-|+|||.|.-.....+.
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCC
Confidence 37899999999999999999998886
No 468
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.018 Score=59.67 Aligned_cols=79 Identities=20% Similarity=0.346 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---------------------cHHHHHH
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---------------------GVKDVRD 203 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---------------------~~~~i~~ 203 (558)
..+-+.+..+-. ..+||-|.||.|||||.-.++..+....+++.++...+ .+.++..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~ 159 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLED 159 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHH
Confidence 444455544433 46899999999999999888888764457787776443 1223344
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCC
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~ 230 (558)
++..... .++.+++||-|+.+.
T Consensus 160 I~~~l~~-----~~p~lvVIDSIQT~~ 181 (456)
T COG1066 160 IIAELEQ-----EKPDLVVIDSIQTLY 181 (456)
T ss_pred HHHHHHh-----cCCCEEEEeccceee
Confidence 4444433 378999999999774
No 469
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.25 E-value=0.031 Score=54.49 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=25.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
-++|.||+||||||+.+.|-+-+..+.--+.++
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~ 61 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEEC
Confidence 488999999999999999988876443334443
No 470
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.25 E-value=0.013 Score=60.36 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++.+.|||.-|||||+|.-.+...+.
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~ 139 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALP 139 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCC
Confidence 57899999999999999998886554
No 471
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.025 Score=52.61 Aligned_cols=25 Identities=40% Similarity=0.651 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|+||+|+||||+++.|-...+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4589999999999999999988874
No 472
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.24 E-value=0.005 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=23.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|+.|+||||+++.+++.++
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999998
No 473
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.23 E-value=0.021 Score=56.24 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=56.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHHHHHH-------h-------------
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVEDARK-------L------------- 211 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~~~~~-------~------------- 211 (558)
..+-|.|++||||||+++.|.+-.....--+.+...+. ..+.+.++++...- .
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~ 119 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG 119 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH
Confidence 56889999999999999999998874433444443221 11223333332210 0
Q ss_pred --hhhcCCceEEEEeCCcc-CCHHHHHHHHhhHhc----CcEEEEecc
Q 008664 212 --RVKSNKRTVLFVDEVHR-FNKSQQDSFLPVIED----GSIVFIGAT 252 (558)
Q Consensus 212 --~~~~~~~~il~IDEid~-l~~~~~~~Ll~~le~----~~iilI~at 252 (558)
....-++.+++.||.-. ++.+.|...++++.+ ..+..++.|
T Consensus 120 IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIs 167 (268)
T COG4608 120 IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 01123789999999875 455666666666643 344444444
No 474
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.22 E-value=0.016 Score=52.80 Aligned_cols=34 Identities=35% Similarity=0.378 Sum_probs=26.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~ 192 (558)
..++|+|.||+||||||+.+.+.+. .....+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 3589999999999999999999984 224455554
No 475
>PLN02840 tRNA dimethylallyltransferase
Probab=96.22 E-value=0.042 Score=58.10 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=27.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|.||+|+|||+++..|++.++ ..++.++
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~--~~iis~D 53 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLN--GEIISAD 53 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCC--CCeEecc
Confidence 4589999999999999999999998 5555544
No 476
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.21 E-value=0.018 Score=64.87 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=26.5
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHh---cCcEEEEecc
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIE---DGSIVFIGAT 252 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le---~~~iilI~at 252 (558)
+-++|+|||+|++...+...|+.... ...++++.||
T Consensus 357 ~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SAT 395 (630)
T TIGR00643 357 RLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSAT 395 (630)
T ss_pred ccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCC
Confidence 55799999999998887777776654 3445555555
No 477
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.21 E-value=0.067 Score=50.23 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.....++|.|+||+||||+++.++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3346789999999999999999999874
No 478
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.028 Score=52.25 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.+.|+....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999998754
No 479
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.20 E-value=0.017 Score=59.04 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHHH-cCCC--CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 147 SLLRSAVC-SNRL--PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 147 ~~l~~~i~-~~~~--~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..|-.++. .+-+ ..++|+||||+|||+|+..++...
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444544 3332 568999999999999987766554
No 480
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.20 E-value=0.021 Score=70.10 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=64.7
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEecccccHH----------HHHHHHHHHHHh-
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAVTSGVK----------DVRDAVEDARKL- 211 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~~~~~~----------~i~~~~~~~~~~- 211 (558)
.+..++.. .-+.++|.|.|||||||+++.+...+. ....++-+..+..... .+..++......
T Consensus 975 Av~~il~s-~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A~TI~s~L~~~~~~~ 1053 (1747)
T PRK13709 975 ATRMILES-TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQ 1053 (1747)
T ss_pred HHHHHHhC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcchhhHHHHhccccccc
Confidence 34444433 225799999999999999999887652 1133443332221111 222222211000
Q ss_pred ---hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 212 ---RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 212 ---~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
........||||||+-+++......|+..++. .+++|||-+..
T Consensus 1054 ~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1054 RSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQ 1101 (1747)
T ss_pred ccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchHh
Confidence 00112458999999999999999999999875 56888886644
No 481
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.033 Score=52.17 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=52.6
Q ss_pred eEEEEcCCCchHHHHH-HHHHHHhCCCceEEEEecc-cc-----------c-------HHHHHHHHHHHHHhhhhcCCce
Q 008664 160 SIIFWGPPGTGKTTLA-KAIVNSVAVSYKFVCLSAV-TS-----------G-------VKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa-~~la~~l~~~~~~i~l~~~-~~-----------~-------~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
-.+++||=.+|||+-. +.+-+.-.....++.+.+. +. | ...-.++++...... ....-.
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~-~~~~~~ 84 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALH-EKPPVD 84 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcc-cCCCcC
Confidence 4789999999999843 3333332212333332221 10 0 111223333332221 001246
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
+|+|||++.+++++...|..+.+.-.+.+|++.
T Consensus 85 ~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 85 CVLIDEAQFFDEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred EEEEehhHhCCHHHHHHHHHHHhhcCCEEEEec
Confidence 999999999999999999999998445555544
No 482
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.16 E-value=0.038 Score=51.77 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=49.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---cHHHHHH-------HHHHH------HH------------
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---GVKDVRD-------AVEDA------RK------------ 210 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---~~~~i~~-------~~~~~------~~------------ 210 (558)
..+.|.||+|+|||||++.|+.......--+.++..+. ....++. +++.. ..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 46899999999999999999987653222333332211 1111110 00000 00
Q ss_pred ---hhhhcCCceEEEEeCCc-cCCHHHHHHHHhhHhc
Q 008664 211 ---LRVKSNKRTVLFVDEVH-RFNKSQQDSFLPVIED 243 (558)
Q Consensus 211 ---~~~~~~~~~il~IDEid-~l~~~~~~~Ll~~le~ 243 (558)
......++.++++||-- .++......+.+.+.+
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 01123478999999986 6777777777666643
No 483
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.15 E-value=0.0053 Score=56.49 Aligned_cols=26 Identities=46% Similarity=0.709 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEE
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFV 189 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i 189 (558)
+.|+|+||||||||++.|++. + ..++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g--~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-G--YPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence 789999999999999999998 6 5555
No 484
>PRK10436 hypothetical protein; Provisional
Probab=96.15 E-value=0.035 Score=59.84 Aligned_cols=94 Identities=15% Similarity=0.258 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccc-----------c---HHHHHHHHHHHHHh
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTS-----------G---VKDVRDAVEDARKL 211 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~-----------~---~~~i~~~~~~~~~~ 211 (558)
..+.+++.. ..+.+|++||+|+||||+..++.+.+.. ...++.+-.... + ...+...+..+
T Consensus 208 ~~l~~~~~~-~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~--- 283 (462)
T PRK10436 208 AQFRQALQQ-PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRAL--- 283 (462)
T ss_pred HHHHHHHHh-cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHH---
Confidence 455555543 3367999999999999999888777752 223333321000 0 01233333333
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEE
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVF 248 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iil 248 (558)
....+.+|+|.||- +.+.....++....|+.++
T Consensus 284 --LR~dPDvI~vGEIR--D~eta~~al~AA~TGHlVl 316 (462)
T PRK10436 284 --LRQDPDVIMVGEIR--DGETAEIAIKAAQTGHLVL 316 (462)
T ss_pred --hcCCCCEEEECCCC--CHHHHHHHHHHHHcCCcEE
Confidence 23478999999996 3455566667777787744
No 485
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.13 E-value=0.019 Score=53.97 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEeccc-----------------------------cc---HHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVT-----------------------------SG---VKDVRD 203 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~-----------------------------~~---~~~i~~ 203 (558)
..+++||++|.||||+|-.++-+.- ....++.+--.. .. ....++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 6899999999999999999886642 111122211100 00 122334
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCCHH---HHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhccc
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFNKS---QQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRC 268 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~~~---~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~ 268 (558)
.++.+.... ..+...+||+|||-..-.. ..+.++.+|+. ..+-+|.+-. ..+++|+.+.
T Consensus 103 ~~~~a~~~l-~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR-----~~p~~Lie~A 166 (191)
T PRK05986 103 GWEEAKRML-ADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR-----GAPRELIEAA 166 (191)
T ss_pred HHHHHHHHH-hCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC-----CCCHHHHHhC
Confidence 455554443 4568899999999754221 23456667765 2334444332 2344555544
No 486
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.13 E-value=0.02 Score=55.47 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
..++|+||.|+||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999974
No 487
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.13 E-value=0.024 Score=55.34 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=31.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-C------CceEEEEecccc-cHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-V------SYKFVCLSAVTS-GVKDVRDAV 205 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~------~~~~i~l~~~~~-~~~~i~~~~ 205 (558)
..+.|+||||+|||+++..++.... . ....+.++.... ....+.++.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 4689999999999999999985532 1 245666665442 334444444
No 488
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.13 E-value=0.025 Score=54.80 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSY 186 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~ 186 (558)
..+=|.|++|+|||||.+.|+..+.++.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 4577999999999999999999887443
No 489
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.11 E-value=0.065 Score=53.48 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCc--eEEEEecccc-----------------cHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY--KFVCLSAVTS-----------------GVKDVRDAVED 207 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~--~~i~l~~~~~-----------------~~~~i~~~~~~ 207 (558)
..+.. +.....+-+|++||+|+||||...++-..++.+. ..+.+-..-. ....+...+..
T Consensus 115 ~i~~~-~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLra 193 (353)
T COG2805 115 PIVRE-LAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRA 193 (353)
T ss_pred HHHHH-HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHH
Confidence 44445 3333446799999999999999999999887432 3333321100 11112222222
Q ss_pred HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEE
Q 008664 208 ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFI 249 (558)
Q Consensus 208 ~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI 249 (558)
+ ....+.||++-|+- +.+....-|..-|.|.++|=
T Consensus 194 A-----LReDPDVIlvGEmR--D~ETi~~ALtAAETGHLV~~ 228 (353)
T COG2805 194 A-----LREDPDVILVGEMR--DLETIRLALTAAETGHLVFG 228 (353)
T ss_pred H-----hhcCCCEEEEeccc--cHHHHHHHHHHHhcCCEEEE
Confidence 2 23478999999985 34566666777788887763
No 490
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.10 E-value=0.062 Score=49.05 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=69.9
Q ss_pred EEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhH
Q 008664 162 IFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVI 241 (558)
Q Consensus 162 LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~l 241 (558)
+=.+.+||||||++.+|++-++. ...+.-+... + +.-..+++.....+ ......+||+|-=+....+.. .|+..+
T Consensus 3 vPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~-~-k~~~~f~~~~l~~L-~~~~~~vViaDRNNh~~reR~-ql~~~~ 77 (168)
T PF08303_consen 3 VPIATIGCGKTTVALALSNLFGE-WGHVQNDNIT-G-KRKPKFIKAVLELL-AKDTHPVVIADRNNHQKRERK-QLFEDV 77 (168)
T ss_pred eeecCCCcCHHHHHHHHHHHcCC-CCccccCCCC-C-CCHHHHHHHHHHHH-hhCCCCEEEEeCCCchHHHHH-HHHHHH
Confidence 33688999999999999998872 1112211111 1 12222222222221 223677999997766554433 344444
Q ss_pred hc---------CcEEEEeccCCCCC--CCCc----HHhhccc---ceeeccCCCHHHHHHHHHHHHHhH
Q 008664 242 ED---------GSIVFIGATTENPS--FHLI----TPLLSRC---RVLTLNPLKPHDVEILLKRAVDDV 292 (558)
Q Consensus 242 e~---------~~iilI~att~n~~--~~l~----~aL~sR~---~~i~~~~l~~~~i~~iL~~~l~~~ 292 (558)
+. ..+.+|+..-.... ..+. ..++.|. +.|.........+..|+...+.++
T Consensus 78 ~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 78 SQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 33 24555554422111 1111 2333444 578888888888999999998874
No 491
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.10 E-value=0.0054 Score=55.69 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=23.5
Q ss_pred EEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 163 FWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 163 L~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
|.||||+||||+++.||+.++ ...+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceech
Confidence 689999999999999999998 666554
No 492
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.10 E-value=0.063 Score=46.10 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 008664 161 IIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~ 181 (558)
++|.|+||+|||||.+.|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 493
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.09 E-value=0.03 Score=62.24 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecc-------------cc-cHHHHHHHHHHHHHh
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAV-------------TS-GVKDVRDAVEDARKL 211 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~-------------~~-~~~~i~~~~~~~~~~ 211 (558)
..+.+++.. ..+.+|++||+|+||||+..++.+.++. +..++.+-.. .. ....+...+..+
T Consensus 306 ~~l~~~~~~-~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~--- 381 (564)
T TIGR02538 306 ALFLEAIHK-PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSF--- 381 (564)
T ss_pred HHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHH---
Confidence 345555543 3367899999999999999888888752 2233322110 00 001233333333
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEE
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVF 248 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iil 248 (558)
....+.+|+|.||- +.+.....++....|+.++
T Consensus 382 --LR~dPDvI~vGEiR--d~eta~~a~~aa~tGHlv~ 414 (564)
T TIGR02538 382 --LRQDPDIIMVGEIR--DLETAEIAIKAAQTGHLVL 414 (564)
T ss_pred --hccCCCEEEeCCCC--CHHHHHHHHHHHHcCCcEE
Confidence 23478999999996 5566677778888888744
No 494
>PRK14526 adenylate kinase; Provisional
Probab=96.09 E-value=0.0055 Score=59.08 Aligned_cols=29 Identities=41% Similarity=0.886 Sum_probs=24.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
.++|+||||+||||+++.|++.++ ..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~--~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN--YYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cceee
Confidence 488999999999999999999987 55544
No 495
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.09 E-value=0.072 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+.|+||||+|||+++..++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 568999999999999999998764
No 496
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.09 E-value=0.04 Score=51.21 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.-+|.|+.|+|||||..+||-.++
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhcc
Confidence 46789999999999999999998875
No 497
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.08 E-value=0.035 Score=52.68 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhC-----------------------------------CCceEE
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVA-----------------------------------VSYKFV 189 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~-----------------------------------~~~~~i 189 (558)
..+-+-+..+-+ .-+++.|+.|+|||.|.+.++--.- ....++
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~ 94 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFF 94 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEE
Confidence 344444444333 3478999999999999998886442 112233
Q ss_pred EEe--cccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH-HHHHHhhH-------hcCcEEEEeccCCCCCCC
Q 008664 190 CLS--AVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ-QDSFLPVI-------EDGSIVFIGATTENPSFH 259 (558)
Q Consensus 190 ~l~--~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~-~~~Ll~~l-------e~~~iilI~att~n~~~~ 259 (558)
.++ .+..+...-+.+++...... ...+..|++||-+..+.... .+..+++| +.|+++++- -+|. .
T Consensus 95 ~~~~~~~~~~~~~~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilT---vhp~-~ 169 (235)
T COG2874 95 PVNLEPVNWGRRSARKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILT---VHPS-A 169 (235)
T ss_pred EecccccccChHHHHHHHHHHHhhH-HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEE---eChh-h
Confidence 332 22223344444444443332 23467889999887653321 22333333 447776652 2443 5
Q ss_pred CcHHhhccc
Q 008664 260 LITPLLSRC 268 (558)
Q Consensus 260 l~~aL~sR~ 268 (558)
++++...|+
T Consensus 170 l~e~~~~ri 178 (235)
T COG2874 170 LDEDVLTRI 178 (235)
T ss_pred cCHHHHHHH
Confidence 666555553
No 498
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.046 Score=57.68 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|.||+|+||||++..+|...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999754
No 499
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.08 E-value=0.039 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++++||||+|||+++..++..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999987664
No 500
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.05 E-value=0.04 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+..++|+|++|+||||++..+|..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999998773
Done!