Query 008664
Match_columns 558
No_of_seqs 638 out of 5384
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvs_A Replication-associated 100.0 5.2E-95 1.8E-99 774.2 38.1 406 120-552 12-420 (447)
2 2r9g_A AAA ATPase, central reg 100.0 1.2E-70 4.2E-75 501.9 16.3 171 378-551 4-176 (204)
3 3bge_A Predicted ATPase; struc 100.0 4.9E-70 1.7E-74 496.8 15.1 168 383-552 2-172 (201)
4 3ctd_A Putative ATPase, AAA fa 100.0 2.7E-67 9.1E-72 484.0 14.5 177 363-552 10-188 (213)
5 1sxj_D Activator 1 41 kDa subu 100.0 2.9E-31 9.8E-36 274.7 28.6 311 118-474 21-351 (353)
6 1sxj_C Activator 1 40 kDa subu 100.0 5.9E-31 2E-35 271.7 27.6 310 121-478 12-332 (340)
7 3u61_B DNA polymerase accessor 100.0 1.6E-31 5.4E-36 274.0 23.1 302 118-475 10-319 (324)
8 2chq_A Replication factor C sm 100.0 4.2E-30 1.4E-34 261.9 26.5 303 121-476 4-316 (319)
9 1iqp_A RFCS; clamp loader, ext 100.0 1.2E-29 4.1E-34 259.4 28.2 301 120-475 11-323 (327)
10 1sxj_B Activator 1 37 kDa subu 100.0 1.7E-28 5.7E-33 250.4 27.3 299 120-475 7-318 (323)
11 1jr3_A DNA polymerase III subu 100.0 1.1E-27 3.9E-32 249.5 25.9 254 121-425 3-282 (373)
12 2z4s_A Chromosomal replication 100.0 9.5E-28 3.2E-32 255.8 19.7 275 132-451 103-408 (440)
13 1sxj_E Activator 1 40 kDa subu 100.0 3E-27 1E-31 244.9 20.7 303 122-474 2-350 (354)
14 1l8q_A Chromosomal replication 99.9 1.1E-26 3.6E-31 238.2 17.2 275 131-456 8-300 (324)
15 3pfi_A Holliday junction ATP-d 99.9 6.6E-25 2.2E-29 226.0 25.6 236 119-402 14-278 (338)
16 3uk6_A RUVB-like 2; hexameric 99.9 4.5E-25 1.5E-29 229.8 21.5 226 120-376 29-329 (368)
17 2chg_A Replication factor C sm 99.9 1.6E-24 5.5E-29 207.7 22.5 215 121-376 4-225 (226)
18 2v1u_A Cell division control p 99.9 7.1E-25 2.4E-29 228.9 21.2 292 123-464 11-352 (387)
19 1hqc_A RUVB; extended AAA-ATPa 99.9 1.5E-23 5E-28 214.3 23.8 258 124-429 2-286 (324)
20 1in4_A RUVB, holliday junction 99.9 2.3E-23 7.9E-28 214.3 24.7 253 121-424 12-293 (334)
21 1njg_A DNA polymerase III subu 99.9 6E-24 2E-28 206.3 19.0 215 120-375 9-249 (250)
22 1sxj_A Activator 1 95 kDa subu 99.9 3.8E-24 1.3E-28 232.7 14.4 201 118-335 23-257 (516)
23 2qby_B CDC6 homolog 3, cell di 99.9 5.3E-22 1.8E-26 207.4 24.7 286 120-463 9-339 (384)
24 1jr3_D DNA polymerase III, del 99.9 1.3E-21 4.5E-26 201.8 24.2 289 148-496 8-315 (343)
25 2gno_A DNA polymerase III, gam 99.9 1.4E-22 4.8E-27 205.2 15.7 243 138-433 1-253 (305)
26 4b4t_J 26S protease regulatory 99.9 2.2E-21 7.5E-26 200.9 22.0 208 126-377 140-389 (405)
27 2c9o_A RUVB-like 1; hexameric 99.9 3E-21 1E-25 206.8 21.1 126 219-376 297-436 (456)
28 3vfd_A Spastin; ATPase, microt 99.9 3.6E-21 1.2E-25 202.1 20.5 225 122-377 103-365 (389)
29 4b4t_I 26S protease regulatory 99.9 7.4E-21 2.5E-25 197.4 20.9 207 126-377 174-423 (437)
30 3eie_A Vacuolar protein sortin 99.9 5.4E-21 1.9E-25 195.6 18.7 193 122-337 6-235 (322)
31 3b9p_A CG5977-PA, isoform A; A 99.9 6.5E-21 2.2E-25 192.4 19.1 224 124-378 11-273 (297)
32 4b4t_M 26S protease regulatory 99.9 5.8E-21 2E-25 200.6 19.3 209 126-379 173-424 (434)
33 2qp9_X Vacuolar protein sortin 99.9 1.2E-20 4E-25 195.6 21.0 192 124-338 41-269 (355)
34 4b4t_H 26S protease regulatory 99.9 1.2E-20 4.2E-25 197.6 20.9 204 130-378 205-451 (467)
35 2qby_A CDC6 homolog 1, cell di 99.9 9.9E-21 3.4E-25 197.2 20.1 293 122-464 11-349 (386)
36 3bos_A Putative DNA replicatio 99.9 5.5E-21 1.9E-25 185.9 17.0 212 121-375 14-241 (242)
37 3d8b_A Fidgetin-like protein 1 99.9 2.1E-20 7.2E-25 193.9 22.4 229 124-383 74-340 (357)
38 1ofh_A ATP-dependent HSL prote 99.9 2E-21 7E-26 196.8 14.2 223 134-377 15-299 (310)
39 4b4t_L 26S protease subunit RP 99.9 1.8E-20 6.3E-25 196.9 21.8 205 130-378 177-423 (437)
40 1lv7_A FTSH; alpha/beta domain 99.9 2E-20 6.8E-25 185.0 20.2 213 123-377 1-252 (257)
41 1a5t_A Delta prime, HOLB; zinc 99.8 1.5E-20 5.1E-25 193.3 18.8 169 147-334 12-209 (334)
42 1xwi_A SKD1 protein; VPS4B, AA 99.8 6E-20 2E-24 187.7 22.5 188 127-337 5-230 (322)
43 3pxg_A Negative regulator of g 99.8 6.3E-21 2.2E-25 204.7 15.1 202 118-338 164-386 (468)
44 4b4t_K 26S protease regulatory 99.8 6.6E-20 2.3E-24 192.5 21.0 204 129-376 167-413 (428)
45 3te6_A Regulatory protein SIR3 99.8 1.8E-20 6E-25 189.7 13.7 228 136-376 22-314 (318)
46 3h4m_A Proteasome-activating n 99.8 1.3E-19 4.3E-24 181.8 19.3 205 129-377 12-258 (285)
47 1ojl_A Transcriptional regulat 99.8 1.1E-19 3.6E-24 184.3 18.6 199 134-339 2-237 (304)
48 2bjv_A PSP operon transcriptio 99.8 6E-20 2.1E-24 182.3 15.1 201 131-338 3-241 (265)
49 3syl_A Protein CBBX; photosynt 99.8 3.8E-20 1.3E-24 187.7 13.9 181 135-337 32-262 (309)
50 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.5E-19 8.5E-24 177.1 19.1 205 130-377 2-249 (262)
51 1qvr_A CLPB protein; coiled co 99.8 1.1E-20 3.8E-25 217.3 10.1 205 121-339 157-394 (854)
52 1fnn_A CDC6P, cell division co 99.8 1.3E-18 4.5E-23 181.7 24.0 222 121-377 7-274 (389)
53 2ce7_A Cell division protein F 99.8 7E-19 2.4E-23 187.6 20.6 204 130-378 12-257 (476)
54 2zan_A Vacuolar protein sortin 99.8 3.6E-19 1.2E-23 189.8 18.4 191 124-337 124-352 (444)
55 3pxi_A Negative regulator of g 99.8 8.4E-20 2.9E-24 207.6 13.1 202 118-338 164-386 (758)
56 1g8p_A Magnesium-chelatase 38 99.8 3.5E-19 1.2E-23 183.6 16.6 224 127-376 17-321 (350)
57 3cf0_A Transitional endoplasmi 99.8 1.1E-18 3.8E-23 176.6 17.7 188 127-338 8-237 (301)
58 2r44_A Uncharacterized protein 99.8 1.2E-19 4.2E-24 186.1 10.6 226 122-376 15-296 (331)
59 4fcw_A Chaperone protein CLPB; 99.8 4.1E-19 1.4E-23 180.2 13.8 196 134-338 17-279 (311)
60 2r62_A Cell division protease 99.8 7.1E-20 2.4E-24 182.0 4.6 208 127-378 4-254 (268)
61 1um8_A ATP-dependent CLP prote 99.8 1.5E-18 5E-23 181.3 14.8 220 135-375 22-363 (376)
62 1r6b_X CLPA protein; AAA+, N-t 99.8 9.7E-19 3.3E-23 199.0 14.4 256 68-336 389-714 (758)
63 1r6b_X CLPA protein; AAA+, N-t 99.8 1.7E-18 5.9E-23 196.9 15.0 230 117-377 169-433 (758)
64 3pxi_A Negative regulator of g 99.8 1.1E-18 3.6E-23 198.6 12.1 194 134-337 491-724 (758)
65 3m6a_A ATP-dependent protease 99.8 3.3E-18 1.1E-22 186.7 15.2 228 133-383 80-347 (543)
66 2dhr_A FTSH; AAA+ protein, hex 99.7 5E-18 1.7E-22 182.1 13.7 212 129-382 26-276 (499)
67 1jbk_A CLPB protein; beta barr 99.7 3.1E-18 1.1E-22 159.8 9.5 158 121-285 9-194 (195)
68 3hu3_A Transitional endoplasmi 99.7 2.3E-17 8E-22 177.2 17.1 189 126-338 196-423 (489)
69 3hws_A ATP-dependent CLP prote 99.7 4E-18 1.4E-22 177.2 9.9 226 136-382 17-354 (363)
70 1ixz_A ATP-dependent metallopr 99.7 3.6E-17 1.2E-21 161.2 16.1 207 127-374 9-253 (254)
71 1iy2_A ATP-dependent metallopr 99.7 1.1E-16 3.9E-21 159.9 18.0 205 129-374 35-277 (278)
72 2p65_A Hypothetical protein PF 99.7 7.2E-18 2.5E-22 156.9 8.2 153 118-277 6-187 (187)
73 3dzd_A Transcriptional regulat 99.7 3.8E-17 1.3E-21 169.8 14.3 199 134-339 129-363 (368)
74 1qvr_A CLPB protein; coiled co 99.7 4E-17 1.4E-21 187.7 14.2 195 134-338 558-820 (854)
75 3cf2_A TER ATPase, transitiona 99.7 9.6E-17 3.3E-21 180.1 16.7 184 129-336 199-421 (806)
76 1d2n_A N-ethylmaleimide-sensit 99.7 3E-17 1E-21 163.5 11.2 179 134-337 33-249 (272)
77 3k1j_A LON protease, ATP-depen 99.7 2E-17 6.7E-22 183.2 8.8 223 124-377 31-375 (604)
78 1ny5_A Transcriptional regulat 99.7 1.1E-15 3.9E-20 159.9 19.3 200 133-339 136-372 (387)
79 3cf2_A TER ATPase, transitiona 99.7 1.4E-17 4.9E-22 186.7 4.8 149 130-290 473-662 (806)
80 1g41_A Heat shock protein HSLU 99.6 4.4E-15 1.5E-19 156.2 18.9 144 217-377 250-433 (444)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 4.9E-15 1.7E-19 159.0 16.6 216 134-375 22-283 (500)
82 2x8a_A Nuclear valosin-contain 99.6 2E-14 6.9E-19 143.2 19.0 223 130-382 6-269 (274)
83 3co5_A Putative two-component 99.6 6.4E-16 2.2E-20 138.7 4.5 129 135-277 5-143 (143)
84 3t15_A Ribulose bisphosphate c 99.6 2.2E-14 7.5E-19 144.4 15.8 148 158-324 36-221 (293)
85 1w5s_A Origin recognition comp 99.6 2.5E-14 8.6E-19 150.4 16.1 219 123-376 14-292 (412)
86 3f9v_A Minichromosome maintena 99.6 9.6E-16 3.3E-20 168.7 3.9 216 134-376 295-586 (595)
87 3n70_A Transport activator; si 99.5 9.5E-15 3.2E-19 131.3 9.0 131 135-277 2-145 (145)
88 1ypw_A Transitional endoplasmi 99.5 5.6E-16 1.9E-20 176.4 -7.6 152 128-291 471-663 (806)
89 1ypw_A Transitional endoplasmi 99.5 6.3E-13 2.2E-17 151.3 16.7 175 127-325 197-409 (806)
90 2qen_A Walker-type ATPase; unk 99.3 1.7E-11 5.8E-16 125.4 15.5 180 132-332 10-248 (350)
91 3f8t_A Predicted ATPase involv 99.3 9.7E-11 3.3E-15 122.5 16.8 202 136-376 215-482 (506)
92 2fna_A Conserved hypothetical 99.2 9.8E-11 3.4E-15 119.9 12.4 175 133-333 12-253 (357)
93 3ec2_A DNA replication protein 99.1 1.1E-10 3.6E-15 108.4 10.1 126 125-254 1-142 (180)
94 4akg_A Glutathione S-transfera 99.0 8.8E-10 3E-14 137.3 12.7 138 149-291 1260-1433(2695)
95 2kjq_A DNAA-related protein; s 99.0 1.4E-09 4.9E-14 97.8 9.3 110 147-269 25-140 (149)
96 2w58_A DNAI, primosome compone 98.9 1.7E-09 5.9E-14 102.0 6.0 122 124-253 15-157 (202)
97 1wgn_A UBAP1, ubiquitin associ 98.8 3.8E-09 1.3E-13 76.5 4.5 38 3-41 23-60 (63)
98 1u0j_A DNA replication protein 98.8 2.3E-08 8E-13 97.8 10.5 126 147-288 91-250 (267)
99 3upu_A ATP-dependent DNA helic 98.7 1.6E-08 5.6E-13 107.9 9.6 134 117-254 7-166 (459)
100 1tue_A Replication protein E1; 98.7 3.3E-08 1.1E-12 92.6 8.3 114 147-274 46-177 (212)
101 2crn_A Ubash3A protein; compac 98.7 3.7E-08 1.3E-12 74.3 6.7 40 2-41 12-51 (64)
102 2qgz_A Helicase loader, putati 98.6 8E-09 2.7E-13 104.4 2.9 129 124-253 114-256 (308)
103 4akg_A Glutathione S-transfera 98.6 7.8E-07 2.7E-11 111.3 19.7 127 149-287 638-791 (2695)
104 3vkg_A Dynein heavy chain, cyt 98.6 4.3E-07 1.5E-11 114.1 17.1 180 148-336 1296-1526(3245)
105 1wji_A Tudor domain containing 98.6 9.7E-08 3.3E-12 71.8 6.7 38 3-41 13-50 (63)
106 2cpw_A CBL-interacting protein 98.5 1.2E-07 4.1E-12 71.6 4.7 39 3-41 23-61 (64)
107 1whc_A RSGI RUH-027, UBA/UBX 3 98.5 1.5E-07 5.2E-12 71.1 5.2 40 2-41 12-51 (64)
108 2dag_A Ubiquitin carboxyl-term 98.5 1.3E-07 4.6E-12 73.5 4.9 39 3-41 13-51 (74)
109 2g3q_A Protein YBL047C; endocy 98.5 1.8E-07 6.3E-12 64.8 4.8 36 3-39 8-43 (43)
110 1ye8_A Protein THEP1, hypothet 98.4 1.1E-06 3.9E-11 81.1 11.3 71 216-286 98-173 (178)
111 2orw_A Thymidine kinase; TMTK, 98.4 1.4E-07 4.9E-12 87.7 4.4 109 160-274 5-137 (184)
112 2cos_A Serine/threonine protei 98.4 2E-07 6.9E-12 65.6 4.0 39 3-41 13-51 (54)
113 1vek_A UBP14, ubiquitin-specif 98.4 2.6E-07 8.9E-12 73.7 5.0 39 3-41 33-71 (84)
114 1ify_A HHR23A, UV excision rep 98.4 2.2E-07 7.4E-12 66.3 4.0 37 3-40 12-48 (49)
115 2knz_A Ubiquilin-4; cytoplasm, 98.4 3.6E-07 1.2E-11 66.3 5.1 39 2-41 14-53 (53)
116 2ekk_A UBA domain from E3 ubiq 98.4 2E-07 6.9E-12 66.0 3.6 34 3-38 13-46 (47)
117 1z6t_A APAF-1, apoptotic prote 98.3 8.1E-06 2.8E-10 89.6 16.4 179 130-333 120-331 (591)
118 2dak_A Ubiquitin carboxyl-term 98.3 5.8E-07 2E-11 67.8 4.0 38 3-41 13-50 (63)
119 2jy5_A Ubiquilin-1; UBA, alter 98.3 8.2E-07 2.8E-11 64.1 4.5 36 2-38 15-51 (52)
120 2dai_A Ubadc1, ubiquitin assoc 98.2 1.2E-06 4.1E-11 69.5 4.8 38 3-41 33-70 (83)
121 3vkg_A Dynein heavy chain, cyt 98.2 4.3E-05 1.5E-09 96.5 20.8 127 149-287 597-751 (3245)
122 1wiv_A UBP14, ubiquitin-specif 98.2 1.7E-06 5.9E-11 67.0 4.6 38 3-41 33-70 (73)
123 1veg_A NEDD8 ultimate buster-1 98.1 2E-06 6.7E-11 67.8 4.7 38 3-41 33-70 (83)
124 1vg5_A RSGI RUH-014, rhomboid 98.1 3E-06 1E-10 65.2 5.1 38 3-41 33-70 (73)
125 2a5y_B CED-4; apoptosis; HET: 98.1 1.4E-05 4.7E-10 87.2 12.1 169 137-329 131-336 (549)
126 2bwb_A Ubiquitin-like protein 98.1 3.6E-06 1.2E-10 58.9 4.7 36 2-38 10-46 (46)
127 4ae4_A Ubiquitin-associated pr 98.1 3.2E-06 1.1E-10 71.9 4.9 36 3-39 12-47 (118)
128 1dv0_A DNA repair protein HHR2 98.1 1E-06 3.5E-11 62.1 1.4 37 3-40 8-44 (47)
129 2dah_A Ubiquilin-3; UBA domain 98.0 6.1E-06 2.1E-10 59.8 5.3 39 2-41 12-51 (54)
130 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.8E-05 6.2E-10 79.3 10.6 67 159-231 124-196 (331)
131 2dna_A Unnamed protein product 98.0 5.7E-06 1.9E-10 62.2 5.1 39 2-41 22-61 (67)
132 3sfz_A APAF-1, apoptotic pepti 98.0 6.3E-05 2.2E-09 89.4 17.0 177 129-330 119-328 (1249)
133 2dkl_A Trinucleotide repeat co 98.0 4.7E-06 1.6E-10 66.4 4.7 38 3-41 25-62 (85)
134 1vej_A Riken cDNA 4931431F19; 98.0 6E-06 2.1E-10 63.6 5.1 39 2-41 32-71 (74)
135 1z96_A DNA-damage, UBA-domain 98.0 5.4E-06 1.9E-10 56.4 4.3 33 3-36 8-40 (40)
136 1wr1_B Ubiquitin-like protein 98.0 6.9E-06 2.4E-10 60.3 5.0 37 2-39 20-57 (58)
137 2r2a_A Uncharacterized protein 98.0 3.4E-06 1.2E-10 79.3 3.5 113 159-275 6-152 (199)
138 2lbc_A Ubiquitin carboxyl-term 97.9 7E-06 2.4E-10 71.2 4.5 39 3-41 7-45 (126)
139 2fz4_A DNA repair protein RAD2 97.8 6.4E-05 2.2E-09 72.5 8.9 92 159-252 109-227 (237)
140 3e1s_A Exodeoxyribonuclease V, 97.8 2.8E-05 9.7E-10 84.9 7.1 99 158-256 204-319 (574)
141 2b8t_A Thymidine kinase; deoxy 97.7 0.00011 3.9E-09 70.0 9.4 92 159-251 13-124 (223)
142 4ae4_A Ubiquitin-associated pr 97.6 5.5E-05 1.9E-09 64.2 4.9 37 3-40 80-116 (118)
143 2r8r_A Sensor protein; KDPD, P 97.6 0.0005 1.7E-08 65.3 11.7 123 159-284 7-172 (228)
144 1vt4_I APAF-1 related killer D 97.6 0.00088 3E-08 76.7 15.5 42 137-181 131-173 (1221)
145 1w36_D RECD, exodeoxyribonucle 97.5 0.00017 5.9E-09 79.3 9.3 95 159-253 165-299 (608)
146 3kb2_A SPBC2 prophage-derived 97.5 0.00021 7.1E-09 64.6 8.4 32 160-193 3-34 (173)
147 2lbc_A Ubiquitin carboxyl-term 97.5 6.9E-05 2.4E-09 64.8 4.7 37 3-40 82-118 (126)
148 1w4r_A Thymidine kinase; type 97.5 5.8E-05 2E-09 70.1 4.0 81 159-247 21-120 (195)
149 2i3b_A HCR-ntpase, human cance 97.5 0.00026 8.8E-09 65.8 7.9 71 216-286 104-181 (189)
150 2cvh_A DNA repair and recombin 97.4 0.00051 1.8E-08 64.6 10.0 35 159-195 21-55 (220)
151 3lw7_A Adenylate kinase relate 97.4 0.0011 3.9E-08 59.5 11.6 29 160-191 3-31 (179)
152 2cwb_A Chimera of immunoglobul 97.4 0.00019 6.4E-09 59.5 5.2 37 2-39 69-106 (108)
153 3jvv_A Twitching mobility prot 97.3 0.00083 2.8E-08 68.7 10.3 95 147-249 113-226 (356)
154 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.0017 5.9E-08 61.3 11.6 24 159-182 24-47 (235)
155 1xx6_A Thymidine kinase; NESG, 97.2 0.00061 2.1E-08 63.3 7.4 80 159-244 9-108 (191)
156 4a74_A DNA repair and recombin 97.1 0.0017 5.6E-08 61.5 10.0 25 159-183 26-50 (231)
157 3cmw_A Protein RECA, recombina 97.1 0.00044 1.5E-08 83.3 7.0 69 159-232 1083-1175(1706)
158 1qhx_A CPT, protein (chloramph 97.1 0.00036 1.2E-08 63.5 4.8 32 159-192 4-35 (178)
159 1ex7_A Guanylate kinase; subst 97.1 0.00086 2.9E-08 62.0 6.9 113 159-287 2-134 (186)
160 1n0w_A DNA repair protein RAD5 97.1 0.0027 9.1E-08 60.6 10.8 37 159-195 25-68 (243)
161 3trf_A Shikimate kinase, SK; a 97.1 0.00038 1.3E-08 63.8 4.5 33 158-192 5-37 (185)
162 2eyu_A Twitching motility prot 97.1 0.0022 7.5E-08 62.6 10.0 84 159-249 26-128 (261)
163 3vkw_A Replicase large subunit 97.0 0.0009 3.1E-08 70.0 7.5 95 159-257 162-274 (446)
164 2iut_A DNA translocase FTSK; n 97.0 0.0093 3.2E-07 64.2 14.9 69 218-286 344-420 (574)
165 3b6e_A Interferon-induced heli 96.9 0.0016 5.6E-08 60.8 7.8 24 159-182 49-72 (216)
166 2j9r_A Thymidine kinase; TK1, 96.9 0.0019 6.5E-08 60.8 7.9 85 160-244 30-128 (214)
167 3e2i_A Thymidine kinase; Zn-bi 96.9 0.00089 3.1E-08 63.0 5.6 91 159-249 29-133 (219)
168 1via_A Shikimate kinase; struc 96.9 0.00063 2.1E-08 61.9 4.5 31 159-191 5-35 (175)
169 1sky_E F1-ATPase, F1-ATP synth 96.9 0.0015 5.2E-08 68.7 7.9 28 156-183 149-176 (473)
170 3vaa_A Shikimate kinase, SK; s 96.9 0.0007 2.4E-08 63.1 4.4 32 159-192 26-57 (199)
171 3cmu_A Protein RECA, recombina 96.9 0.0021 7.2E-08 78.4 9.5 36 147-182 1413-1451(2050)
172 3iij_A Coilin-interacting nucl 96.9 0.00086 2.9E-08 61.2 4.9 31 159-191 12-42 (180)
173 2zr9_A Protein RECA, recombina 96.8 0.0037 1.3E-07 63.7 10.0 71 159-230 62-152 (349)
174 1g5t_A COB(I)alamin adenosyltr 96.8 0.0095 3.2E-07 55.2 11.8 104 159-268 29-171 (196)
175 1kag_A SKI, shikimate kinase I 96.8 0.00085 2.9E-08 60.7 4.5 30 159-190 5-34 (173)
176 2ga8_A Hypothetical 39.9 kDa p 96.8 3.7E-05 1.3E-09 78.1 -5.1 54 149-204 15-68 (359)
177 1zuh_A Shikimate kinase; alpha 96.8 0.00084 2.9E-08 60.5 4.5 32 158-191 7-38 (168)
178 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0021 7.1E-08 65.1 7.8 96 147-252 162-272 (330)
179 1pzn_A RAD51, DNA repair and r 96.8 0.0069 2.4E-07 61.7 11.4 24 159-182 132-155 (349)
180 1oqy_A HHR23A, UV excision rep 96.8 0.00041 1.4E-08 70.9 2.0 38 3-41 172-209 (368)
181 3hr8_A Protein RECA; alpha and 96.8 0.0054 1.8E-07 62.5 10.4 84 147-231 47-153 (356)
182 2iyv_A Shikimate kinase, SK; t 96.8 0.00094 3.2E-08 61.1 4.4 32 159-192 3-34 (184)
183 1y63_A LMAJ004144AAA protein; 96.7 0.00082 2.8E-08 61.8 3.8 32 159-192 11-43 (184)
184 3uie_A Adenylyl-sulfate kinase 96.7 0.0058 2E-07 56.8 9.3 28 156-183 23-50 (200)
185 1e6c_A Shikimate kinase; phosp 96.7 0.0013 4.6E-08 59.2 4.5 31 159-191 3-33 (173)
186 2ze6_A Isopentenyl transferase 96.6 0.0011 3.6E-08 64.6 3.9 32 160-193 3-34 (253)
187 2rhm_A Putative kinase; P-loop 96.6 0.0012 4.1E-08 60.7 4.0 30 159-190 6-35 (193)
188 2cp8_A NEXT to BRCA1 gene 1 pr 96.6 0.0021 7.3E-08 45.9 4.3 39 2-41 12-51 (54)
189 2ehv_A Hypothetical protein PH 96.6 0.0044 1.5E-07 59.3 8.1 21 159-179 31-51 (251)
190 3t61_A Gluconokinase; PSI-biol 96.6 0.0016 5.6E-08 60.6 4.7 32 159-192 19-50 (202)
191 2orv_A Thymidine kinase; TP4A 96.6 0.0085 2.9E-07 56.9 9.5 108 159-268 20-143 (234)
192 2c95_A Adenylate kinase 1; tra 96.6 0.0018 6E-08 59.7 4.8 33 158-192 9-41 (196)
193 1rif_A DAR protein, DNA helica 96.6 0.011 3.7E-07 58.0 10.8 104 147-253 120-262 (282)
194 1aky_A Adenylate kinase; ATP:A 96.6 0.0018 6.3E-08 61.1 4.9 31 159-191 5-35 (220)
195 1u94_A RECA protein, recombina 96.5 0.0082 2.8E-07 61.3 10.0 68 159-230 64-154 (356)
196 3cm0_A Adenylate kinase; ATP-b 96.5 0.0015 5.1E-08 59.8 4.1 29 160-190 6-34 (186)
197 4gp7_A Metallophosphoesterase; 96.5 0.0047 1.6E-07 56.0 7.3 19 159-177 10-28 (171)
198 4eun_A Thermoresistant glucoki 96.5 0.002 6.7E-08 60.0 4.9 32 157-190 28-59 (200)
199 3llm_A ATP-dependent RNA helic 96.5 0.025 8.5E-07 53.9 12.8 31 147-179 67-97 (235)
200 2dr3_A UPF0273 protein PH0284; 96.5 0.0096 3.3E-07 56.7 9.9 24 159-182 24-47 (247)
201 2cdn_A Adenylate kinase; phosp 96.5 0.0021 7.1E-08 59.8 4.9 31 159-191 21-51 (201)
202 3dl0_A Adenylate kinase; phosp 96.5 0.0017 5.9E-08 61.1 4.3 30 160-191 2-31 (216)
203 3sr0_A Adenylate kinase; phosp 96.5 0.0019 6.4E-08 60.8 4.5 29 160-190 2-30 (206)
204 2z43_A DNA repair and recombin 96.5 0.0062 2.1E-07 61.4 8.7 37 159-195 108-151 (324)
205 3umf_A Adenylate kinase; rossm 96.5 0.0017 5.9E-08 61.5 4.2 29 159-189 30-58 (217)
206 3lda_A DNA repair protein RAD5 96.5 0.011 3.7E-07 61.3 10.6 23 159-181 179-201 (400)
207 1ly1_A Polynucleotide kinase; 96.5 0.0014 4.9E-08 59.4 3.5 24 160-183 4-28 (181)
208 1xp8_A RECA protein, recombina 96.5 0.015 5.2E-07 59.5 11.5 71 159-230 75-165 (366)
209 1tev_A UMP-CMP kinase; ploop, 96.5 0.0019 6.5E-08 59.3 4.4 31 159-191 4-34 (196)
210 1nlf_A Regulatory protein REPA 96.5 0.011 3.8E-07 57.9 10.1 24 159-182 31-54 (279)
211 3fb4_A Adenylate kinase; psych 96.5 0.0019 6.6E-08 60.7 4.3 30 160-191 2-31 (216)
212 2pt5_A Shikimate kinase, SK; a 96.5 0.002 6.8E-08 57.8 4.3 30 160-191 2-31 (168)
213 2vli_A Antibiotic resistance p 96.4 0.0015 5.1E-08 59.5 3.3 29 159-189 6-34 (183)
214 1ak2_A Adenylate kinase isoenz 96.4 0.0025 8.7E-08 60.8 5.1 31 159-191 17-47 (233)
215 1zd8_A GTP:AMP phosphotransfer 96.4 0.0022 7.6E-08 60.9 4.6 31 159-191 8-38 (227)
216 2ewv_A Twitching motility prot 96.4 0.0064 2.2E-07 62.5 8.3 82 159-247 137-237 (372)
217 2bwj_A Adenylate kinase 5; pho 96.4 0.0022 7.6E-08 59.2 4.5 31 159-191 13-43 (199)
218 3be4_A Adenylate kinase; malar 96.4 0.0021 7.2E-08 60.7 4.3 31 159-191 6-36 (217)
219 1knq_A Gluconate kinase; ALFA/ 96.4 0.0023 8E-08 57.9 4.5 30 159-190 9-38 (175)
220 1qf9_A UMP/CMP kinase, protein 96.4 0.0022 7.7E-08 58.7 4.2 31 159-191 7-37 (194)
221 1ukz_A Uridylate kinase; trans 96.3 0.0026 8.9E-08 59.1 4.5 31 159-191 16-46 (203)
222 2ooa_A E3 ubiquitin-protein li 96.3 0.0056 1.9E-07 42.9 4.9 35 2-37 14-48 (52)
223 3kl4_A SRP54, signal recogniti 96.3 0.0057 2E-07 64.0 7.5 25 159-183 98-122 (433)
224 1zak_A Adenylate kinase; ATP:A 96.3 0.0022 7.4E-08 60.7 4.0 31 158-190 5-35 (222)
225 2ius_A DNA translocase FTSK; n 96.3 0.028 9.6E-07 60.0 12.8 69 219-287 299-375 (512)
226 3io5_A Recombination and repai 96.3 0.019 6.3E-07 57.3 10.5 84 147-230 12-124 (333)
227 1zp6_A Hypothetical protein AT 96.3 0.0019 6.5E-08 59.3 3.2 32 159-192 10-41 (191)
228 1kht_A Adenylate kinase; phosp 96.3 0.0017 5.8E-08 59.5 2.8 25 159-183 4-28 (192)
229 3zvl_A Bifunctional polynucleo 96.3 0.0097 3.3E-07 62.2 8.8 32 158-191 258-289 (416)
230 1e4v_A Adenylate kinase; trans 96.3 0.0028 9.5E-08 59.7 4.2 30 160-191 2-31 (214)
231 1nks_A Adenylate kinase; therm 96.3 0.0017 5.7E-08 59.6 2.6 24 160-183 3-26 (194)
232 1svm_A Large T antigen; AAA+ f 96.2 0.0055 1.9E-07 63.1 6.6 62 158-231 169-230 (377)
233 3dm5_A SRP54, signal recogniti 96.2 0.011 3.7E-07 62.0 8.9 26 158-183 100-125 (443)
234 1cke_A CK, MSSA, protein (cyti 96.2 0.0031 1.1E-07 59.6 4.4 30 159-190 6-35 (227)
235 3crm_A TRNA delta(2)-isopenten 96.2 0.0031 1.1E-07 63.3 4.5 34 159-194 6-39 (323)
236 2jaq_A Deoxyguanosine kinase; 96.2 0.003 1E-07 58.4 4.1 28 160-189 2-29 (205)
237 3tlx_A Adenylate kinase 2; str 96.2 0.0033 1.1E-07 60.6 4.4 34 157-192 28-61 (243)
238 2pbr_A DTMP kinase, thymidylat 96.2 0.0037 1.3E-07 57.3 4.6 32 160-193 2-36 (195)
239 1v5w_A DMC1, meiotic recombina 96.2 0.013 4.5E-07 59.4 9.0 49 147-195 109-166 (343)
240 2xb4_A Adenylate kinase; ATP-b 96.2 0.0034 1.2E-07 59.6 4.3 30 160-191 2-31 (223)
241 1gvn_B Zeta; postsegregational 96.1 0.0025 8.6E-08 63.1 3.4 33 159-193 34-66 (287)
242 3nwj_A ATSK2; P loop, shikimat 96.1 0.0044 1.5E-07 60.0 4.5 32 159-192 49-80 (250)
243 2z0h_A DTMP kinase, thymidylat 96.0 0.0046 1.6E-07 56.9 4.5 31 161-193 3-36 (197)
244 2plr_A DTMP kinase, probable t 96.0 0.0032 1.1E-07 58.7 3.4 24 160-183 6-29 (213)
245 4b3f_X DNA-binding protein smu 96.0 0.011 3.8E-07 65.4 8.2 54 147-202 196-250 (646)
246 2d9s_A CBL E3 ubiquitin protei 96.0 0.012 4.2E-07 41.4 5.3 39 2-41 12-50 (53)
247 2pez_A Bifunctional 3'-phospho 96.0 0.0052 1.8E-07 55.9 4.6 32 159-192 6-40 (179)
248 3r20_A Cytidylate kinase; stru 96.0 0.0054 1.9E-07 58.7 4.8 31 159-191 10-40 (233)
249 2gxq_A Heat resistant RNA depe 96.0 0.025 8.5E-07 52.3 9.3 23 159-181 39-62 (207)
250 2i1q_A DNA repair and recombin 96.0 0.024 8.3E-07 56.8 9.7 24 159-182 99-122 (322)
251 2v54_A DTMP kinase, thymidylat 95.9 0.0054 1.8E-07 56.8 4.5 34 159-194 5-39 (204)
252 2p5t_B PEZT; postsegregational 95.9 0.0036 1.2E-07 60.7 3.2 25 159-183 33-57 (253)
253 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0055 1.9E-07 59.6 4.6 31 159-191 5-38 (260)
254 2if2_A Dephospho-COA kinase; a 95.9 0.0052 1.8E-07 57.1 4.2 30 160-192 3-32 (204)
255 2qor_A Guanylate kinase; phosp 95.9 0.0047 1.6E-07 57.6 3.8 25 159-183 13-37 (204)
256 3ake_A Cytidylate kinase; CMP 95.9 0.006 2.1E-07 56.6 4.4 31 160-192 4-34 (208)
257 3a8t_A Adenylate isopentenyltr 95.8 0.004 1.4E-07 62.8 3.3 34 159-194 41-74 (339)
258 2fwr_A DNA repair protein RAD2 95.8 0.0095 3.2E-07 63.0 6.4 89 159-252 109-227 (472)
259 2oca_A DAR protein, ATP-depend 95.8 0.031 1.1E-06 59.7 10.5 94 159-252 129-261 (510)
260 2bbw_A Adenylate kinase 4, AK4 95.8 0.0044 1.5E-07 59.7 3.4 26 158-183 27-52 (246)
261 1kgd_A CASK, peripheral plasma 95.8 0.0048 1.6E-07 56.4 3.3 25 159-183 6-30 (180)
262 2juj_A E3 ubiquitin-protein li 95.8 0.011 3.8E-07 41.6 4.2 39 2-41 10-48 (56)
263 1jjv_A Dephospho-COA kinase; P 95.7 0.0056 1.9E-07 57.0 3.6 29 160-191 4-32 (206)
264 2wwf_A Thymidilate kinase, put 95.7 0.0043 1.5E-07 57.9 2.6 25 159-183 11-35 (212)
265 4e22_A Cytidylate kinase; P-lo 95.7 0.0079 2.7E-07 58.2 4.5 30 159-190 28-57 (252)
266 3rlf_A Maltose/maltodextrin im 95.7 0.044 1.5E-06 56.2 10.2 25 159-183 30-54 (381)
267 2bdt_A BH3686; alpha-beta prot 95.6 0.0061 2.1E-07 55.9 3.4 24 160-183 4-27 (189)
268 3tau_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 56.8 3.6 25 159-183 9-33 (208)
269 1nn5_A Similar to deoxythymidy 95.6 0.0062 2.1E-07 56.8 3.4 25 159-183 10-34 (215)
270 1t6n_A Probable ATP-dependent 95.6 0.027 9.3E-07 52.7 7.9 24 159-182 52-75 (220)
271 2grj_A Dephospho-COA kinase; T 95.6 0.0094 3.2E-07 55.2 4.5 31 160-192 14-44 (192)
272 2r6a_A DNAB helicase, replicat 95.6 0.025 8.6E-07 59.7 8.3 46 147-193 191-240 (454)
273 2eyq_A TRCF, transcription-rep 95.6 0.048 1.6E-06 64.3 11.4 36 217-252 725-760 (1151)
274 3tui_C Methionine import ATP-b 95.5 0.055 1.9E-06 55.2 10.4 25 159-183 55-79 (366)
275 2oo9_A E3 ubiquitin-protein li 95.5 0.021 7.1E-07 38.7 4.7 38 2-40 7-44 (46)
276 1uf9_A TT1252 protein; P-loop, 95.5 0.0081 2.8E-07 55.5 3.8 31 159-192 9-39 (203)
277 3foz_A TRNA delta(2)-isopenten 95.5 0.0081 2.8E-07 59.8 3.8 33 159-193 11-43 (316)
278 1hv8_A Putative ATP-dependent 95.5 0.051 1.7E-06 54.7 10.0 24 159-182 45-68 (367)
279 2px0_A Flagellar biosynthesis 95.5 0.057 1.9E-06 53.5 10.0 25 159-183 106-130 (296)
280 1qde_A EIF4A, translation init 95.4 0.033 1.1E-06 52.2 7.9 24 159-182 52-76 (224)
281 4g1u_C Hemin import ATP-bindin 95.4 0.041 1.4E-06 53.6 8.8 25 159-183 38-62 (266)
282 3tr0_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 55.9 3.3 25 159-183 8-32 (205)
283 1m7g_A Adenylylsulfate kinase; 95.4 0.012 4.2E-07 55.0 4.8 35 149-183 16-50 (211)
284 2yvu_A Probable adenylyl-sulfa 95.4 0.0076 2.6E-07 55.1 3.3 25 159-183 14-38 (186)
285 3exa_A TRNA delta(2)-isopenten 95.4 0.0081 2.8E-07 59.9 3.5 33 159-193 4-36 (322)
286 3cmu_A Protein RECA, recombina 95.4 0.031 1.1E-06 68.4 9.2 69 158-230 1081-1172(2050)
287 2j41_A Guanylate kinase; GMP, 95.4 0.0066 2.3E-07 56.3 2.7 25 159-183 7-31 (207)
288 3d3q_A TRNA delta(2)-isopenten 95.4 0.0093 3.2E-07 60.2 4.0 32 160-193 9-40 (340)
289 3nh6_A ATP-binding cassette SU 95.4 0.054 1.9E-06 53.9 9.5 25 159-183 81-105 (306)
290 3bh0_A DNAB-like replicative h 95.4 0.054 1.9E-06 54.1 9.6 46 147-193 56-104 (315)
291 3a00_A Guanylate kinase, GMP k 95.3 0.0089 3E-07 54.8 3.4 24 160-183 3-26 (186)
292 1vht_A Dephospho-COA kinase; s 95.3 0.012 4E-07 55.4 4.2 30 159-191 5-34 (218)
293 2h92_A Cytidylate kinase; ross 95.3 0.013 4.4E-07 55.0 4.4 31 159-191 4-34 (219)
294 1q3t_A Cytidylate kinase; nucl 95.3 0.016 5.5E-07 55.3 5.1 31 159-191 17-47 (236)
295 1vec_A ATP-dependent RNA helic 95.3 0.054 1.9E-06 49.9 8.6 18 159-176 41-58 (206)
296 2xau_A PRE-mRNA-splicing facto 95.2 0.087 3E-06 59.4 11.7 33 147-181 100-132 (773)
297 3ney_A 55 kDa erythrocyte memb 95.2 0.011 3.7E-07 55.0 3.6 25 159-183 20-44 (197)
298 1gm5_A RECG; helicase, replica 95.2 0.021 7.3E-07 64.3 6.6 40 138-180 372-411 (780)
299 2z0m_A 337AA long hypothetical 95.2 0.069 2.4E-06 53.0 9.7 25 159-183 32-56 (337)
300 1uj2_A Uridine-cytidine kinase 95.2 0.011 3.6E-07 57.2 3.5 26 158-183 22-47 (252)
301 1lvg_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 54.9 3.4 25 159-183 5-29 (198)
302 3ice_A Transcription terminati 95.1 0.05 1.7E-06 55.7 8.2 27 156-182 172-198 (422)
303 3pey_A ATP-dependent RNA helic 95.1 0.061 2.1E-06 54.7 9.2 28 152-179 38-65 (395)
304 2qt1_A Nicotinamide riboside k 95.1 0.011 3.7E-07 55.1 3.1 32 159-192 22-54 (207)
305 1ltq_A Polynucleotide kinase; 95.0 0.013 4.5E-07 57.9 3.9 28 160-189 4-32 (301)
306 3iuy_A Probable ATP-dependent 95.0 0.083 2.8E-06 49.7 9.3 19 159-177 58-76 (228)
307 3c8u_A Fructokinase; YP_612366 95.0 0.01 3.4E-07 55.5 2.7 25 159-183 23-47 (208)
308 3cmw_A Protein RECA, recombina 95.0 0.062 2.1E-06 65.0 10.0 69 159-231 35-126 (1706)
309 2pl3_A Probable ATP-dependent 95.0 0.083 2.8E-06 50.0 9.2 18 159-176 63-80 (236)
310 2v6i_A RNA helicase; membrane, 95.0 0.081 2.8E-06 55.3 9.9 17 159-175 3-19 (431)
311 3lxw_A GTPase IMAP family memb 94.9 0.3 1E-05 46.7 13.1 23 159-181 22-44 (247)
312 3fmo_B ATP-dependent RNA helic 94.9 0.035 1.2E-06 55.1 6.6 18 158-175 131-148 (300)
313 1gtv_A TMK, thymidylate kinase 94.9 0.0079 2.7E-07 56.1 1.7 24 160-183 2-25 (214)
314 3ihp_A Ubiquitin carboxyl-term 94.9 0.017 5.9E-07 65.7 4.8 39 3-41 656-694 (854)
315 4a1f_A DNAB helicase, replicat 94.9 0.035 1.2E-06 56.1 6.4 37 159-195 47-84 (338)
316 2ce2_X GTPase HRAS; signaling 94.9 0.17 5.7E-06 44.1 10.3 23 160-182 5-27 (166)
317 2va8_A SSO2462, SKI2-type heli 94.8 0.099 3.4E-06 58.4 10.7 40 216-255 144-187 (715)
318 3asz_A Uridine kinase; cytidin 94.8 0.013 4.6E-07 54.5 3.0 25 159-183 7-31 (211)
319 2p6r_A Afuhel308 helicase; pro 94.8 0.075 2.5E-06 59.3 9.5 19 159-177 41-59 (702)
320 3fe2_A Probable ATP-dependent 94.8 0.047 1.6E-06 52.1 6.9 19 159-177 67-85 (242)
321 3h1t_A Type I site-specific re 94.8 0.021 7.3E-07 62.2 5.0 24 159-182 199-222 (590)
322 1c9k_A COBU, adenosylcobinamid 94.8 0.033 1.1E-06 50.9 5.4 59 161-226 2-60 (180)
323 2f6r_A COA synthase, bifunctio 94.7 0.019 6.7E-07 56.4 4.1 30 159-191 76-105 (281)
324 3bor_A Human initiation factor 94.7 0.09 3.1E-06 49.9 8.7 19 159-177 68-86 (237)
325 3fdi_A Uncharacterized protein 94.7 0.021 7.3E-07 53.2 4.1 30 159-190 7-36 (201)
326 2oxc_A Probable ATP-dependent 94.7 0.039 1.4E-06 52.2 6.0 17 159-175 62-78 (230)
327 1znw_A Guanylate kinase, GMP k 94.7 0.016 5.6E-07 54.0 3.2 25 159-183 21-45 (207)
328 2xgj_A ATP-dependent RNA helic 94.7 0.22 7.7E-06 57.7 13.3 94 159-255 102-235 (1010)
329 1z6g_A Guanylate kinase; struc 94.6 0.017 5.7E-07 54.6 3.2 24 159-182 24-47 (218)
330 4eaq_A DTMP kinase, thymidylat 94.6 0.017 5.9E-07 55.0 3.3 26 159-184 27-52 (229)
331 1q0u_A Bstdead; DEAD protein, 94.6 0.059 2E-06 50.4 7.1 19 159-177 42-60 (219)
332 3p32_A Probable GTPase RV1496/ 94.6 0.11 3.7E-06 52.8 9.5 27 156-182 77-103 (355)
333 2q6t_A DNAB replication FORK h 94.6 0.054 1.8E-06 56.9 7.4 48 147-195 188-239 (444)
334 1htw_A HI0065; nucleotide-bind 94.6 0.019 6.6E-07 51.3 3.3 25 159-183 34-58 (158)
335 1s96_A Guanylate kinase, GMP k 94.5 0.019 6.4E-07 54.4 3.3 25 159-183 17-41 (219)
336 3eph_A TRNA isopentenyltransfe 94.5 0.02 7E-07 59.0 3.7 31 160-192 4-34 (409)
337 1q02_A Sequestosome 1; helical 94.5 0.032 1.1E-06 38.9 3.5 33 3-36 14-48 (52)
338 1wb9_A DNA mismatch repair pro 94.5 0.1 3.6E-06 58.8 9.8 23 159-181 608-630 (800)
339 1ls1_A Signal recognition part 94.5 0.1 3.5E-06 51.6 8.8 25 159-183 99-123 (295)
340 2hf9_A Probable hydrogenase ni 94.4 0.052 1.8E-06 50.9 6.1 37 147-183 27-63 (226)
341 1x6v_B Bifunctional 3'-phospho 94.3 0.038 1.3E-06 60.4 5.6 33 158-192 52-87 (630)
342 2wsm_A Hydrogenase expression/ 94.3 0.045 1.5E-06 51.1 5.5 45 147-191 19-63 (221)
343 1ewq_A DNA mismatch repair pro 94.3 0.075 2.6E-06 59.6 8.0 23 159-181 577-599 (765)
344 3e70_C DPA, signal recognition 94.3 0.065 2.2E-06 53.9 6.9 27 157-183 128-154 (328)
345 3ber_A Probable ATP-dependent 94.2 0.051 1.8E-06 52.2 5.7 18 159-176 81-98 (249)
346 1xjc_A MOBB protein homolog; s 94.2 0.029 1E-06 50.7 3.7 26 158-183 4-29 (169)
347 3dkp_A Probable ATP-dependent 94.2 0.046 1.6E-06 52.1 5.4 17 159-175 67-83 (245)
348 4dsu_A GTPase KRAS, isoform 2B 94.2 0.19 6.4E-06 45.1 9.2 23 160-182 6-28 (189)
349 2qmh_A HPR kinase/phosphorylas 94.2 0.019 6.4E-07 53.3 2.3 25 159-183 35-59 (205)
350 2gza_A Type IV secretion syste 94.2 0.031 1.1E-06 57.1 4.2 43 148-192 167-209 (361)
351 1wp9_A ATP-dependent RNA helic 94.1 0.16 5.3E-06 52.9 9.8 23 160-182 25-47 (494)
352 1rz3_A Hypothetical protein rb 94.1 0.024 8.3E-07 52.6 3.1 24 159-182 23-46 (201)
353 1fuu_A Yeast initiation factor 94.1 0.15 5.2E-06 51.8 9.4 18 159-176 59-76 (394)
354 1rj9_A FTSY, signal recognitio 94.1 0.038 1.3E-06 55.0 4.6 36 159-194 103-138 (304)
355 3gmt_A Adenylate kinase; ssgci 94.1 0.033 1.1E-06 53.0 3.9 30 160-191 10-39 (230)
356 1bif_A 6-phosphofructo-2-kinas 94.0 0.065 2.2E-06 56.7 6.6 25 159-183 40-64 (469)
357 2qnr_A Septin-2, protein NEDD5 94.0 0.17 5.7E-06 50.2 9.1 23 159-181 19-41 (301)
358 3ly5_A ATP-dependent RNA helic 94.0 0.14 4.8E-06 49.5 8.4 19 159-177 92-110 (262)
359 2oap_1 GSPE-2, type II secreti 94.0 0.052 1.8E-06 58.1 5.7 44 147-192 251-294 (511)
360 2jeo_A Uridine-cytidine kinase 94.0 0.029 1E-06 53.8 3.4 25 159-183 26-50 (245)
361 3fho_A ATP-dependent RNA helic 94.0 0.13 4.5E-06 54.9 8.9 26 157-182 157-183 (508)
362 3lnc_A Guanylate kinase, GMP k 93.9 0.018 6.3E-07 54.6 1.9 25 159-183 28-53 (231)
363 2zj8_A DNA helicase, putative 93.9 0.19 6.5E-06 56.1 10.4 18 159-176 40-57 (720)
364 1s2m_A Putative ATP-dependent 93.9 0.17 5.8E-06 51.7 9.3 22 159-180 59-80 (400)
365 2qm8_A GTPase/ATPase; G protei 93.9 0.13 4.3E-06 52.0 8.0 25 158-182 55-79 (337)
366 1np6_A Molybdopterin-guanine d 93.8 0.039 1.3E-06 50.2 3.8 26 158-183 6-31 (174)
367 2zpa_A Uncharacterized protein 93.7 0.25 8.5E-06 54.2 10.5 93 159-257 193-291 (671)
368 2f1r_A Molybdopterin-guanine d 93.7 0.031 1.1E-06 50.7 2.9 25 159-183 3-27 (171)
369 3dz8_A RAS-related protein RAB 93.7 0.4 1.4E-05 43.3 10.5 24 159-182 24-47 (191)
370 3hdt_A Putative kinase; struct 93.7 0.043 1.5E-06 52.1 3.9 30 159-190 15-44 (223)
371 3thx_B DNA mismatch repair pro 93.6 0.16 5.3E-06 58.1 9.1 22 159-180 674-695 (918)
372 2v9p_A Replication protein E1; 93.6 0.035 1.2E-06 55.3 3.3 25 159-183 127-151 (305)
373 1zd9_A ADP-ribosylation factor 93.6 0.67 2.3E-05 41.7 11.9 23 160-182 24-46 (188)
374 3fht_A ATP-dependent RNA helic 93.5 0.27 9.4E-06 50.1 10.1 23 154-176 60-82 (412)
375 3l9o_A ATP-dependent RNA helic 93.5 0.26 8.8E-06 57.8 10.9 22 159-180 200-221 (1108)
376 1wj7_A Hypothetical protein (R 93.5 0.088 3E-06 42.9 4.8 37 3-40 43-80 (104)
377 1odf_A YGR205W, hypothetical 3 93.5 0.038 1.3E-06 54.7 3.3 25 159-183 32-56 (290)
378 3lxx_A GTPase IMAP family memb 93.5 0.32 1.1E-05 46.0 9.7 24 159-182 30-53 (239)
379 2j37_W Signal recognition part 93.4 0.12 4.2E-06 55.0 7.3 24 159-182 102-125 (504)
380 3bgw_A DNAB-like replicative h 93.4 0.15 5.2E-06 53.5 8.0 49 147-196 185-236 (444)
381 3aez_A Pantothenate kinase; tr 93.4 0.038 1.3E-06 55.2 3.2 25 159-183 91-115 (312)
382 1xti_A Probable ATP-dependent 93.4 0.14 4.9E-06 52.0 7.7 22 159-180 46-67 (391)
383 1cr0_A DNA primase/helicase; R 93.4 0.037 1.3E-06 54.6 3.1 25 159-183 36-60 (296)
384 1g8f_A Sulfate adenylyltransfe 93.3 0.041 1.4E-06 58.7 3.4 25 159-183 396-420 (511)
385 1svi_A GTP-binding protein YSX 93.3 0.39 1.3E-05 43.3 9.8 24 158-181 23-46 (195)
386 2gk6_A Regulator of nonsense t 93.3 0.071 2.4E-06 58.6 5.4 44 159-202 196-241 (624)
387 3thx_A DNA mismatch repair pro 93.2 0.23 8E-06 56.8 9.7 22 159-180 663-684 (934)
388 2onk_A Molybdate/tungstate ABC 93.2 0.048 1.6E-06 52.3 3.5 25 159-183 25-49 (240)
389 2jlq_A Serine protease subunit 93.2 0.25 8.6E-06 51.8 9.4 15 159-173 20-34 (451)
390 3tqc_A Pantothenate kinase; bi 93.2 0.046 1.6E-06 54.8 3.4 24 160-183 94-117 (321)
391 3fmp_B ATP-dependent RNA helic 93.1 0.2 7E-06 52.7 8.6 20 156-175 129-148 (479)
392 4edh_A DTMP kinase, thymidylat 93.1 0.049 1.7E-06 51.2 3.3 32 160-191 8-40 (213)
393 3kta_A Chromosome segregation 93.1 0.049 1.7E-06 49.3 3.2 25 159-183 27-51 (182)
394 3tif_A Uncharacterized ABC tra 93.1 0.044 1.5E-06 52.4 3.0 25 159-183 32-56 (235)
395 1nrj_B SR-beta, signal recogni 93.1 0.058 2E-06 50.1 3.8 26 157-182 11-36 (218)
396 2pcj_A ABC transporter, lipopr 93.0 0.043 1.5E-06 52.0 2.8 25 159-183 31-55 (224)
397 1wrb_A DJVLGB; RNA helicase, D 93.0 0.12 4E-06 49.5 6.0 18 159-176 61-78 (253)
398 3pqc_A Probable GTP-binding pr 93.0 0.42 1.5E-05 42.9 9.5 23 159-181 24-46 (195)
399 3b9q_A Chloroplast SRP recepto 93.0 0.049 1.7E-06 54.2 3.2 25 159-183 101-125 (302)
400 2f9l_A RAB11B, member RAS onco 93.0 0.05 1.7E-06 50.0 3.1 23 160-182 7-29 (199)
401 4dhe_A Probable GTP-binding pr 93.0 0.4 1.4E-05 44.4 9.5 24 159-182 30-53 (223)
402 1oix_A RAS-related protein RAB 93.0 0.047 1.6E-06 49.9 2.9 24 160-183 31-54 (191)
403 1p9r_A General secretion pathw 93.0 0.069 2.4E-06 55.6 4.4 35 148-183 158-192 (418)
404 2j0s_A ATP-dependent RNA helic 92.9 0.33 1.1E-05 49.7 9.6 21 159-179 75-95 (410)
405 1sgw_A Putative ABC transporte 92.9 0.049 1.7E-06 51.3 3.0 25 159-183 36-60 (214)
406 1b0u_A Histidine permease; ABC 92.9 0.049 1.7E-06 53.0 3.0 33 159-191 33-65 (262)
407 3v9p_A DTMP kinase, thymidylat 92.8 0.043 1.5E-06 52.2 2.5 25 159-183 26-50 (227)
408 1sq5_A Pantothenate kinase; P- 92.8 0.052 1.8E-06 54.1 3.2 25 159-183 81-105 (308)
409 2dyk_A GTP-binding protein; GT 92.8 0.055 1.9E-06 47.3 3.0 24 159-182 2-25 (161)
410 3sop_A Neuronal-specific septi 92.8 0.055 1.9E-06 52.9 3.2 24 160-183 4-27 (270)
411 1lw7_A Transcriptional regulat 92.8 0.06 2E-06 55.0 3.6 25 159-183 171-195 (365)
412 3eiq_A Eukaryotic initiation f 92.8 0.21 7.3E-06 51.1 7.9 19 159-177 78-96 (414)
413 3b85_A Phosphate starvation-in 92.8 0.037 1.3E-06 51.9 1.9 27 153-181 19-45 (208)
414 2cbz_A Multidrug resistance-as 92.7 0.044 1.5E-06 52.4 2.4 25 159-183 32-56 (237)
415 3tqf_A HPR(Ser) kinase; transf 92.7 0.056 1.9E-06 48.9 2.9 23 159-181 17-39 (181)
416 1oyw_A RECQ helicase, ATP-depe 92.7 0.4 1.4E-05 51.4 10.2 24 159-182 41-64 (523)
417 2whx_A Serine protease/ntpase/ 92.7 0.35 1.2E-05 52.9 9.9 40 215-254 275-319 (618)
418 2ocp_A DGK, deoxyguanosine kin 92.7 0.054 1.8E-06 51.7 3.0 24 160-183 4-27 (241)
419 3fvq_A Fe(3+) IONS import ATP- 92.7 0.059 2E-06 54.9 3.3 25 159-183 31-55 (359)
420 3qf4_A ABC transporter, ATP-bi 92.7 0.27 9.2E-06 53.5 8.9 25 159-183 370-394 (587)
421 1g6h_A High-affinity branched- 92.6 0.056 1.9E-06 52.4 3.0 34 159-192 34-67 (257)
422 1a7j_A Phosphoribulokinase; tr 92.6 0.033 1.1E-06 55.1 1.4 25 159-183 6-30 (290)
423 2ff7_A Alpha-hemolysin translo 92.6 0.057 2E-06 52.0 3.0 34 159-192 36-69 (247)
424 3o8b_A HCV NS3 protease/helica 92.6 0.31 1.1E-05 53.6 9.1 33 159-193 233-265 (666)
425 3qf4_B Uncharacterized ABC tra 92.6 0.24 8.2E-06 54.1 8.3 25 159-183 382-406 (598)
426 2yhs_A FTSY, cell division pro 92.5 0.21 7.3E-06 52.8 7.5 25 159-183 294-318 (503)
427 3d31_A Sulfate/molybdate ABC t 92.5 0.066 2.3E-06 54.3 3.5 34 159-192 27-60 (348)
428 3tmk_A Thymidylate kinase; pho 92.5 0.065 2.2E-06 50.5 3.2 26 159-184 6-31 (216)
429 1ji0_A ABC transporter; ATP bi 92.5 0.06 2.1E-06 51.6 3.0 34 159-192 33-66 (240)
430 2olj_A Amino acid ABC transpor 92.5 0.059 2E-06 52.4 3.0 25 159-183 51-75 (263)
431 2pze_A Cystic fibrosis transme 92.5 0.063 2.2E-06 51.0 3.1 25 159-183 35-59 (229)
432 2wji_A Ferrous iron transport 92.4 0.064 2.2E-06 47.6 2.9 22 160-181 5-26 (165)
433 2zej_A Dardarin, leucine-rich 92.4 0.053 1.8E-06 49.1 2.4 21 160-180 4-24 (184)
434 2xxa_A Signal recognition part 92.4 0.26 9E-06 51.5 8.0 35 159-193 101-137 (433)
435 2ixe_A Antigen peptide transpo 92.4 0.062 2.1E-06 52.5 3.0 34 159-192 46-79 (271)
436 1vma_A Cell division protein F 92.4 0.066 2.3E-06 53.3 3.3 25 159-183 105-129 (306)
437 2d2e_A SUFC protein; ABC-ATPas 92.4 0.061 2.1E-06 51.9 2.9 23 159-181 30-52 (250)
438 1z47_A CYSA, putative ABC-tran 92.4 0.071 2.4E-06 54.2 3.5 25 159-183 42-66 (355)
439 3gfo_A Cobalt import ATP-bindi 92.4 0.063 2.1E-06 52.6 3.0 25 159-183 35-59 (275)
440 3cr8_A Sulfate adenylyltranfer 92.4 0.062 2.1E-06 58.0 3.2 25 159-183 370-394 (552)
441 3i5x_A ATP-dependent RNA helic 92.4 0.5 1.7E-05 50.8 10.5 18 158-175 111-128 (563)
442 2ihy_A ABC transporter, ATP-bi 92.4 0.067 2.3E-06 52.5 3.2 34 159-192 48-81 (279)
443 3ld9_A DTMP kinase, thymidylat 92.3 0.077 2.6E-06 50.2 3.5 29 155-183 18-46 (223)
444 1z2a_A RAS-related protein RAB 92.3 0.075 2.6E-06 46.7 3.2 24 159-182 6-29 (168)
445 3lv8_A DTMP kinase, thymidylat 92.3 0.067 2.3E-06 51.1 3.1 25 159-183 28-52 (236)
446 2zu0_C Probable ATP-dependent 92.3 0.063 2.1E-06 52.4 2.9 24 159-182 47-70 (267)
447 4a82_A Cystic fibrosis transme 92.3 0.24 8.4E-06 53.8 7.9 25 159-183 368-392 (578)
448 2it1_A 362AA long hypothetical 92.3 0.074 2.5E-06 54.2 3.5 25 159-183 30-54 (362)
449 2yyz_A Sugar ABC transporter, 92.3 0.074 2.5E-06 54.1 3.5 25 159-183 30-54 (359)
450 1j8m_F SRP54, signal recogniti 92.3 0.32 1.1E-05 48.1 8.1 24 159-182 99-122 (297)
451 2ffh_A Protein (FFH); SRP54, s 92.3 0.51 1.8E-05 49.0 9.9 25 159-183 99-123 (425)
452 2og2_A Putative signal recogni 92.2 0.07 2.4E-06 54.4 3.2 25 159-183 158-182 (359)
453 1mv5_A LMRA, multidrug resista 92.2 0.055 1.9E-06 51.9 2.4 25 159-183 29-53 (243)
454 2zts_A Putative uncharacterize 92.2 0.073 2.5E-06 50.5 3.2 23 159-181 31-53 (251)
455 2p67_A LAO/AO transport system 92.2 0.27 9.1E-06 49.6 7.5 26 157-182 55-80 (341)
456 2o8b_B DNA mismatch repair pro 92.2 0.28 9.7E-06 56.8 8.6 21 159-179 790-810 (1022)
457 1kao_A RAP2A; GTP-binding prot 92.2 0.08 2.7E-06 46.3 3.2 23 160-182 5-27 (167)
458 1oxx_K GLCV, glucose, ABC tran 92.2 0.068 2.3E-06 54.4 3.0 25 159-183 32-56 (353)
459 1v43_A Sugar-binding transport 92.2 0.078 2.7E-06 54.3 3.5 25 159-183 38-62 (372)
460 1p5z_B DCK, deoxycytidine kina 92.1 0.033 1.1E-06 54.0 0.7 25 159-183 25-49 (263)
461 1g29_1 MALK, maltose transport 92.1 0.079 2.7E-06 54.3 3.5 25 159-183 30-54 (372)
462 1vpl_A ABC transporter, ATP-bi 92.1 0.071 2.4E-06 51.6 3.0 25 159-183 42-66 (256)
463 2ged_A SR-beta, signal recogni 92.1 0.098 3.3E-06 47.4 3.8 25 158-182 48-72 (193)
464 2nzj_A GTP-binding protein REM 92.0 0.076 2.6E-06 47.1 2.9 23 159-181 5-27 (175)
465 2axn_A 6-phosphofructo-2-kinas 92.0 0.074 2.5E-06 57.1 3.3 25 159-183 36-60 (520)
466 2qi9_C Vitamin B12 import ATP- 92.0 0.061 2.1E-06 51.9 2.4 33 159-192 27-59 (249)
467 3sqw_A ATP-dependent RNA helic 92.0 0.7 2.4E-05 50.0 11.1 19 158-176 60-78 (579)
468 1ek0_A Protein (GTP-binding pr 92.0 0.086 3E-06 46.3 3.2 23 160-182 5-27 (170)
469 2obl_A ESCN; ATPase, hydrolase 92.0 0.17 5.8E-06 51.3 5.7 45 147-191 60-104 (347)
470 2z83_A Helicase/nucleoside tri 91.9 0.33 1.1E-05 51.1 8.1 16 159-174 22-37 (459)
471 1u8z_A RAS-related protein RAL 91.9 0.089 3E-06 46.0 3.2 24 159-182 5-28 (168)
472 2ghi_A Transport protein; mult 91.9 0.063 2.2E-06 52.1 2.4 25 159-183 47-71 (260)
473 2yz2_A Putative ABC transporte 91.9 0.077 2.6E-06 51.7 3.0 25 159-183 34-58 (266)
474 4a4z_A Antiviral helicase SKI2 91.9 0.53 1.8E-05 54.6 10.4 19 159-177 55-73 (997)
475 2wjy_A Regulator of nonsense t 91.8 0.14 4.8E-06 57.8 5.4 43 159-201 372-416 (800)
476 1z0j_A RAB-22, RAS-related pro 91.8 0.092 3.2E-06 46.2 3.2 23 160-182 8-30 (170)
477 1wms_A RAB-9, RAB9, RAS-relate 91.8 0.092 3.2E-06 46.7 3.2 24 159-182 8-31 (177)
478 4tmk_A Protein (thymidylate ki 91.7 0.087 3E-06 49.5 3.0 24 160-183 5-28 (213)
479 4f4c_A Multidrug resistance pr 91.7 0.27 9.1E-06 58.8 7.9 88 161-251 1108-1273(1321)
480 1g16_A RAS-related protein SEC 91.7 0.092 3.2E-06 46.2 3.0 22 160-181 5-26 (170)
481 2nq2_C Hypothetical ABC transp 91.6 0.071 2.4E-06 51.5 2.4 25 159-183 32-56 (253)
482 1z08_A RAS-related protein RAB 91.6 0.099 3.4E-06 46.1 3.2 24 159-182 7-30 (170)
483 1ky3_A GTP-binding protein YPT 91.6 0.099 3.4E-06 46.6 3.2 24 159-182 9-32 (182)
484 2lkc_A Translation initiation 91.6 0.12 4.1E-06 45.9 3.7 24 158-181 8-31 (178)
485 1c1y_A RAS-related protein RAP 91.6 0.1 3.5E-06 45.7 3.2 22 160-181 5-26 (167)
486 1r8s_A ADP-ribosylation factor 91.6 0.11 3.7E-06 45.5 3.4 23 160-182 2-24 (164)
487 2wjg_A FEOB, ferrous iron tran 91.6 0.09 3.1E-06 47.4 2.9 23 159-181 8-30 (188)
488 3q85_A GTP-binding protein REM 91.5 0.093 3.2E-06 46.2 2.9 21 160-180 4-24 (169)
489 3l0o_A Transcription terminati 91.5 0.44 1.5E-05 48.7 8.1 27 156-182 173-199 (427)
490 3iev_A GTP-binding protein ERA 91.5 0.59 2E-05 46.3 9.1 23 159-181 11-33 (308)
491 1wf3_A GTP-binding protein; GT 91.5 1.3 4.3E-05 43.7 11.5 23 159-181 8-30 (301)
492 4hlc_A DTMP kinase, thymidylat 91.5 0.16 5.6E-06 47.2 4.6 32 161-192 5-36 (205)
493 3q72_A GTP-binding protein RAD 91.5 0.085 2.9E-06 46.3 2.6 21 160-180 4-24 (166)
494 1r2q_A RAS-related protein RAB 91.4 0.11 3.7E-06 45.6 3.2 22 160-181 8-29 (170)
495 3bc1_A RAS-related protein RAB 91.4 0.11 3.6E-06 46.9 3.2 23 159-181 12-34 (195)
496 2pjz_A Hypothetical protein ST 91.4 0.091 3.1E-06 51.1 2.9 24 159-182 31-54 (263)
497 2erx_A GTP-binding protein DI- 91.4 0.1 3.5E-06 45.9 3.0 22 160-181 5-26 (172)
498 2dpy_A FLII, flagellum-specifi 91.4 0.15 5.1E-06 53.4 4.7 46 147-192 146-191 (438)
499 3ihp_A Ubiquitin carboxyl-term 91.3 0.15 5E-06 58.1 4.9 39 2-41 723-761 (854)
500 3gd7_A Fusion complex of cysti 91.3 0.087 3E-06 54.3 2.7 25 159-183 48-72 (390)
No 1
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.2e-95 Score=774.15 Aligned_cols=406 Identities=46% Similarity=0.743 Sum_probs=362.2
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHH
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVK 199 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~ 199 (558)
...||++++||.+|++++||++.++....+..++..++.+++|||||||||||++|++|++.++ ..|+.+++...+..
T Consensus 12 ~~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~f~~l~a~~~~~~ 89 (447)
T 3pvs_A 12 TFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--ADVERISAVTSGVK 89 (447)
T ss_dssp --CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CEEEEEETTTCCHH
T ss_pred ccCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CCeEEEEeccCCHH
Confidence 3479999999999999999999998889999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHH
Q 008664 200 DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPH 279 (558)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~ 279 (558)
+++.++..+.... ..+.+.||||||||++++.+|+.|++.++++.+++|++||+|+.+.++++|+|||.++.|.+++.+
T Consensus 90 ~ir~~~~~a~~~~-~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~e 168 (447)
T 3pvs_A 90 EIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTE 168 (447)
T ss_dssp HHHHHHHHHHHHH-HTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHH
T ss_pred HHHHHHHHHHHhh-hcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHH
Confidence 9999998887654 356789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCC
Q 008664 280 DVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCS 359 (558)
Q Consensus 280 ~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 359 (558)
++..++.+.+......+ +..++.+++++++.|++.|+||+|.++++|+.++..+... ..+
T Consensus 169 di~~il~~~l~~~~~~~----~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~-----------~~~----- 228 (447)
T 3pvs_A 169 DIEQVLTQAMEDKTRGY----GGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVD-----------DSG----- 228 (447)
T ss_dssp HHHHHHHHHHHCTTTSS----TTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBC-----------TTS-----
T ss_pred HHHHHHHHHHHHHhhhh----ccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc-----------cCC-----
Confidence 99999999998744444 4467889999999999999999999999999999887521 001
Q ss_pred CCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccC
Q 008664 360 PYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLA 439 (558)
Q Consensus 360 ~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla 439 (558)
...||.+++++++++....||+.|+.|||+||+|+||+||+|+++|+||+++|+++||||.+|+|||+++||||||||
T Consensus 229 --~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 229 --KRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp --CEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred --CCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 357999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcC
Q 008664 440 DPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIG 519 (558)
Q Consensus 440 ~~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~ 519 (558)
||+|+.+|++|++|+++||||||+|+|||||||||+|||||++|.||++|+++|+++ +..+||.||||+||++||++|
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~~~~~~--~~~~vp~~l~~~~~~~~~~~~ 384 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARER--PDYDVPVHLRNAPTKLMKEMG 384 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHS--CCCCCCGGGSSSCC-------
T ss_pred ChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhc--CCCCCChHHhCCCcchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred CCCCCccCCCCCC--CC-CCCCCCCCCCCccccCCC
Q 008664 520 YGKGYIYTPDDPS--AK-QSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 520 ~~~~y~y~~~~~~--~~-q~y~p~~~~~~~~~~~~~ 552 (558)
||+||+||||||+ |. |+|||++|+|++||+|++
T Consensus 385 ~~~~y~y~h~~~~~~~~~~~y~p~~~~~~~~~~~~~ 420 (447)
T 3pvs_A 385 YGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTN 420 (447)
T ss_dssp ---CCCCGGGSGGGCCTTCCCSCGGGTTCCCCCCCS
T ss_pred CCCCCCCCCCCCCCcccccccCCccCCCCeeeCCCC
Confidence 9999999999998 75 999999999999999987
No 2
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=100.00 E-value=1.2e-70 Score=501.90 Aligned_cols=171 Identities=40% Similarity=0.609 Sum_probs=155.8
Q ss_pred cccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHh
Q 008664 378 HLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFL 457 (558)
Q Consensus 378 ~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~ 457 (558)
...||+.||.|||+||||+|||||||+|+|+|||+||+++| ||.||+|||+++||||||||||+|+.+|++|++|+++|
T Consensus 4 ~~~yDk~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i 82 (204)
T 2r9g_A 4 ALTHDKNGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL 82 (204)
T ss_dssp --------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCCCCCccCCCCCC--CCC
Q 008664 458 GMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--AKQ 535 (558)
Q Consensus 458 G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~y~y~~~~~~--~~q 535 (558)
|||||+++|||||||||+|||||++|.||++|+++|+++ +..+||.||||+||++|++||||+||+||||||+ |.|
T Consensus 83 G~PE~~i~LaqaviyLA~aPKSNs~y~A~~~A~~~v~~~--~~~~VP~hLrna~t~~~k~lG~g~gY~YpHd~p~~~v~Q 160 (204)
T 2r9g_A 83 GLPEARIPLADVVVDLCLSPKSNSAYMALDAALADIREG--KAGDVPDHLRDSHYKGAKSLNRGVGYQYPHHFDQAWVNQ 160 (204)
T ss_dssp CTTTTHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTT--CCCCCCGGGSCTTC------CCSCCSCCGGGSGGGCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhc--CCCCCCccccCCCcchhhhcCCCCCCcCCCcCCCCcccC
Confidence 999999999999999999999999999999999999998 8999999999999999999999999999999998 999
Q ss_pred CCCCCCCCCCccccCC
Q 008664 536 SFLPPSLEGYKFLDWP 551 (558)
Q Consensus 536 ~y~p~~~~~~~~~~~~ 551 (558)
+|||++|+|++||+|+
T Consensus 161 ~YlP~~l~~~~fY~p~ 176 (204)
T 2r9g_A 161 QYLPDKLKNAQYYQPK 176 (204)
T ss_dssp CCSCGGGTTCCCCCCC
T ss_pred CcCCCcCCCCeeeccC
Confidence 9999999999999998
No 3
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=100.00 E-value=4.9e-70 Score=496.84 Aligned_cols=168 Identities=45% Similarity=0.792 Sum_probs=145.4
Q ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchh
Q 008664 383 RAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPEC 462 (558)
Q Consensus 383 ~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~ 462 (558)
+.||.|||+||||+|||||||+|+|+|||+|||++||||.||+|||+++||||||||||+|+.+|++|++|+++||||||
T Consensus 2 k~Gd~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 81 (201)
T 3bge_A 2 SLGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEG 81 (201)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHH
T ss_pred CCchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCCCCCccCCCCCC--C-CCCCCC
Q 008664 463 NVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDDPS--A-KQSFLP 539 (558)
Q Consensus 463 ~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~y~y~~~~~~--~-~q~y~p 539 (558)
+|+|||||||||+|||||++|.||++|+++|+++ +..+||.||||+||++|++||||+||+||||||+ | .|+|||
T Consensus 82 ~i~LaqaviyLA~aPKSNs~y~A~~~A~~~v~~~--~~~~VP~hLrna~t~~~k~lG~g~gY~YpHd~p~~~v~~Q~YlP 159 (201)
T 3bge_A 82 ERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDL--PDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAAGENYFP 159 (201)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHS--CCCCCCGGGSSSCCCC---------------------CCCCSSC
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhc--CCCCCChhhcCCCccchhhcCCCCCCcCCCcCCCCccccccCCC
Confidence 9999999999999999999999999999999998 8999999999999999999999999999999998 8 899999
Q ss_pred CCCCCCccccCCC
Q 008664 540 PSLEGYKFLDWPK 552 (558)
Q Consensus 540 ~~~~~~~~~~~~~ 552 (558)
++|+|++||+|++
T Consensus 160 ~~l~~~~fY~p~~ 172 (201)
T 3bge_A 160 PELKDTQYYFPTN 172 (201)
T ss_dssp GGGTTCCCCCCCS
T ss_pred ccCCCCcccCCCC
Confidence 9999999999987
No 4
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=100.00 E-value=2.7e-67 Score=483.98 Aligned_cols=177 Identities=40% Similarity=0.667 Sum_probs=142.0
Q ss_pred cccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChH
Q 008664 363 ALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPL 442 (558)
Q Consensus 363 ~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~ 442 (558)
..||.+.++++++++...||+.||.|||+||||||||||||+|+|+|||+|||++||||.||+|||+++||||||||||+
T Consensus 10 ~~it~~~~~~~~~~~~~~yDk~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~ 89 (213)
T 3ctd_A 10 VVIDLAIAEDSIQKKNIVYDKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPN 89 (213)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTT
T ss_pred eeecHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhCCCCCCCCccccCCCCchhhhcCCCC
Q 008664 443 ALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRESVGQNEGVPLHLRNAPTKLMKEIGYGK 522 (558)
Q Consensus 443 a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~ 522 (558)
|+.+|++|++|+++||||||+++|||||+|||+|||||++ .||++|+++|+++ +..+||.||||+ |+
T Consensus 90 Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~APKSNs~-~A~~~A~~~v~~~--~~~~VP~hLrna----------G~ 156 (213)
T 3ctd_A 90 AIVVVQSCCDAFDRVGFPEGLFFLSQASLYLAISPKSNST-KSIFKAMEAIKAT--NVSLVPNHLKNN----------AS 156 (213)
T ss_dssp HHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCCCGG-GHHHHHHHHHC-------CCCGGGSTT----------CT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHhc--CCCCCCHHHhcC----------CC
Confidence 9999999999999999999999999999999999999999 9999999999998 899999999998 78
Q ss_pred CCccCCCCCC--CCCCCCCCCCCCCccccCCC
Q 008664 523 GYIYTPDDPS--AKQSFLPPSLEGYKFLDWPK 552 (558)
Q Consensus 523 ~y~y~~~~~~--~~q~y~p~~~~~~~~~~~~~ 552 (558)
||+||||||+ |.|+|||++|+|++||+|++
T Consensus 157 gY~YpHd~p~~~v~Q~YlP~~l~~~~fY~p~~ 188 (213)
T 3ctd_A 157 NYLNPHNYQGKWLQQEYLPTDLQGIKFWKPKD 188 (213)
T ss_dssp TCCCGGGC----CCCCCSCTTC--CCCCCCC-
T ss_pred CCCCcccCCCCcccCCCCCCcCCCCcccCCCC
Confidence 9999999998 99999999999999999987
No 5
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.9e-31 Score=274.70 Aligned_cols=311 Identities=19% Similarity=0.322 Sum_probs=240.7
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC----CCceEEEEec
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA----VSYKFVCLSA 193 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~----~~~~~i~l~~ 193 (558)
.....||+++|+|.+|++++|+++.+ ..+..++..+..++++|+||||||||++++++++.+. ....++.+++
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAV---TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTH---HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHH---HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34457999999999999999999998 9999999998888899999999999999999999875 2356888888
Q ss_pred cc-ccHHHHHHHHHHHHHh-----------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCC
Q 008664 194 VT-SGVKDVRDAVEDARKL-----------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFH 259 (558)
Q Consensus 194 ~~-~~~~~i~~~~~~~~~~-----------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~ 259 (558)
.+ .+...+++.+...... ....+.+.||||||+|.++...++.|+.++++ ....+|+++ |....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~--~~~~~ 175 (353)
T 1sxj_D 98 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC--NYVTR 175 (353)
T ss_dssp SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE--SCGGG
T ss_pred ccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe--Cchhh
Confidence 76 4666666655554332 00123567999999999999999999999987 345666665 44457
Q ss_pred CcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc
Q 008664 260 LITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAV 339 (558)
Q Consensus 260 l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~ 339 (558)
+.+++.+||..+.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.++.+...+..
T Consensus 176 l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~-----------~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~ 244 (353)
T 1sxj_D 176 IIDPLASQCSKFRFKALDASNAIDRLRFISEQ-----------ENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244 (353)
T ss_dssp SCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT-----------TTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHH
T ss_pred CcchhhccCceEEeCCCCHHHHHHHHHHHHHH-----------hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999998876 7788999999999999999999999999998876532
Q ss_pred cCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 008664 340 RVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGE 419 (558)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~ge 419 (558)
. + ....||.++|++++.. .+++.+..+++++++++.+.++.|+.+++..|+
T Consensus 245 ~-------------~------~~~~It~~~v~~~~~~----------~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~ 295 (353)
T 1sxj_D 245 L-------------G------DGKNITSTQVEELAGV----------VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGW 295 (353)
T ss_dssp H-------------C------SCCCCCHHHHHHHHTC----------CCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSC
T ss_pred C-------------c------cCccccHHHHHHHhCC----------CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 0 1 0126999999998873 235678889999999999999999999999999
Q ss_pred ChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHh
Q 008664 420 QPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFL--GMPECNVILAQCVAYLA 474 (558)
Q Consensus 420 dp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~--G~pe~~~~l~~~~~~l~ 474 (558)
+|..|.++++....+..++.+.+.........++-..+ |. -.++.|...++.|+
T Consensus 296 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~~l~l~~~~~~~~ 351 (353)
T 1sxj_D 296 SAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGT-NEHIQLLNLLVKIS 351 (353)
T ss_dssp CCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence 99999999998776655555444443333333333333 43 34455555555444
No 6
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.98 E-value=5.9e-31 Score=271.74 Aligned_cols=310 Identities=22% Similarity=0.317 Sum_probs=244.1
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC---ceEEEEecccc-
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS---YKFVCLSAVTS- 196 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~---~~~i~l~~~~~- 196 (558)
..||+++|||.+|++++||++++ ..+..++..++.++++|+|||||||||+++++++.+.+. ..++.+++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~---~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVI---TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHH---HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CCchHHHhCCCcHHHhcCcHHHH---HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 57999999999999999999998 899999999998889999999999999999999997532 35788887663
Q ss_pred cHHHHHHHHHHHHHhh-hhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 197 GVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~-~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
+...+++.+....... ...+.+.|++|||+|.++...++.|+.++|+ ....+|+++ |....+.+++.|||.++.|
T Consensus 89 ~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~--n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 89 GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA--NYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE--SCGGGSCHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEe--cCccccchhHHhhceeEec
Confidence 6677777666554321 1223579999999999999999999999998 456677766 5556899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~ 353 (558)
.+++.+++..++..++.. +++.+++++++.+++.++||+|.+++.|+.+...+...
T Consensus 167 ~~l~~~~~~~~l~~~~~~-----------~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~------------- 222 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVH-----------EKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNP------------- 222 (340)
T ss_dssp CCCCHHHHHHHHHHHHHT-----------TTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSS-------------
T ss_pred cCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-------------
Confidence 999999999999999876 77889999999999999999999999998875443210
Q ss_pred cCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCChHHHHHHHhhcc
Q 008664 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE-GGEQPLYIARRLVRFA 432 (558)
Q Consensus 354 ~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~-~gedp~~I~rrl~~~a 432 (558)
+ ...||.+++.+++.. .+.+.+..+++++.++|.+.|++++.+|+. .|++|.+|.+++...+
T Consensus 223 ~-------~~~it~~~v~~~~~~----------~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~ 285 (340)
T 1sxj_C 223 D-------EDEISDDVIYECCGA----------PRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKIL 285 (340)
T ss_dssp S-------CCCBCHHHHHHHTTC----------CCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred c-------cccccHHHHHHHhCC----------CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 236999999988753 356788899999999999999999999998 9999999999998877
Q ss_pred ccccccCChHhHHHHH-HHHHHHHHh--CCchhhHHHHHHHHHHhcCCC
Q 008664 433 SEDVGLADPLALNQAV-SCYQACHFL--GMPECNVILAQCVAYLALAPK 478 (558)
Q Consensus 433 ~edigla~~~a~~~~~-~~~~a~~~~--G~pe~~~~l~~~~~~l~~~pk 478 (558)
.. ..+.....+..++ ...++-.++ |. -.++.|...++.++..=|
T Consensus 286 ~~-~~~~~~~~~~~~~~~l~~~~~~l~~g~-~~~l~le~l~~~l~~~~~ 332 (340)
T 1sxj_C 286 ED-YELQNEETRVHLLTKLADIEYSISKGG-NDQIQGSAVIGAIKASFE 332 (340)
T ss_dssp TT-SCCSSHHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHCC
T ss_pred Hh-ccCCcHHHHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhh
Confidence 53 1221022222222 223333333 54 456677777777765443
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.98 E-value=1.6e-31 Score=273.97 Aligned_cols=302 Identities=18% Similarity=0.232 Sum_probs=227.8
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
.....+|+++|||++|++++|+++.+ ..+..++..+..+ .+|++||||||||++++++++.++ .++++++++..
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~---~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~--~~~~~i~~~~~ 84 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDK---ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN--ADMMFVNGSDC 84 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHH---HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT--EEEEEEETTTC
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHH---HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--CCEEEEccccc
Confidence 45667999999999999999999998 9999999988775 457778899999999999999998 99999999998
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-HHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 197 GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-KSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
+...++..+..........+.+.+|||||+|.++ ++.++.|+.++++ ..+++|++| |....+.++|.+||.++.|
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~--n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 85 KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA--NNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE--SSGGGSCTTHHHHSEEEEC
T ss_pred CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe--CCccccCHHHHhhCcEEEe
Confidence 8888888877765543344578999999999999 9999999999997 567777776 5555899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh-HHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH-DAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~-~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~ 352 (558)
++++.+++..++..++....... ..+++.+++ ++++.|++.++||+|.+++.|+.++ . .
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~--~-~------------- 222 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEIC----KHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS--S-K------------- 222 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHH----HHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--G-G-------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH----HHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--c-c-------------
Confidence 99999987666555544322211 126788988 9999999999999999999999987 2 1
Q ss_pred ccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhcc
Q 008664 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFA 432 (558)
Q Consensus 353 ~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a 432 (558)
..||.+++++++.. .+.+..+++++++++.+.+++|+.+++. +|..|.+++....
T Consensus 223 ----------~~i~~~~v~~~~~~------------~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~ 277 (324)
T 3u61_B 223 ----------GVLDAGILSLVTND------------RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEI 277 (324)
T ss_dssp ----------TCBCC------------------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHhCC------------HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHH
Confidence 25999999887653 2356677888889999999999999988 8999999998777
Q ss_pred ccccccCChHhHHHHHHHH-HHHHHh--CCchhhHHHHHHHHHHhc
Q 008664 433 SEDVGLADPLALNQAVSCY-QACHFL--GMPECNVILAQCVAYLAL 475 (558)
Q Consensus 433 ~edigla~~~a~~~~~~~~-~a~~~~--G~pe~~~~l~~~~~~l~~ 475 (558)
.... ++..+..+.... .+-+++ |. ..++.|.-.++.++.
T Consensus 278 ~~~~---~~~~l~~i~~~l~~~d~~l~~g~-~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 278 YSRV---TPQSIIRMYEIVGENNQYHGIAA-NTELHLAYLFIQLAC 319 (324)
T ss_dssp HHHS---CHHHHHHHHHHHHHHHHHTTTCS-CHHHHHHHHHHHHHH
T ss_pred HHhC---CHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 6544 233333322221 222222 55 445565555555543
No 8
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.97 E-value=4.2e-30 Score=261.86 Aligned_cols=303 Identities=23% Similarity=0.308 Sum_probs=232.9
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccc-
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTS- 196 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~- 196 (558)
..||.++|+|.+|++++|+++.+ ..+..++..+..++++|+||||||||++|+.+++.+.+ ...++.+++...
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVI---QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHH---HHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred cccHHHhcCCCCHHHHhCCHHHH---HHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 46899999999999999999998 89999998888888999999999999999999999732 245788887654
Q ss_pred cHHHHHHHHHHHHHhhhh-cCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 197 GVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~~~-~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
+...++..+......... .+++.+|||||+|.++...++.|+.++++ ..+++|++| |....+.+++.+||.++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~--~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 81 GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC--NYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp CTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEE--SCGGGSCHHHHTTCEEEEC
T ss_pred ChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEe--CChhhcchHHHhhCeEEEe
Confidence 444555555544322112 25689999999999999999999999988 567777777 4445789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~ 353 (558)
.+++.+++..++...+.+ .++.+++++++.|++.++||+|.+++.++.+... .
T Consensus 159 ~~~~~~~~~~~l~~~~~~-----------~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~-------------- 211 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEK-----------EGVKITEDGLEALIYISGGDFRKAINALQGAAAI--G-------------- 211 (319)
T ss_dssp CCCCHHHHHHHHHHHHHT-----------TCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--S--------------
T ss_pred cCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--C--------------
Confidence 999999999999999877 7788999999999999999999999999988653 1
Q ss_pred cCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCChHHHHHHHhhcc
Q 008664 354 ESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE-GGEQPLYIARRLVRFA 432 (558)
Q Consensus 354 ~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~-~gedp~~I~rrl~~~a 432 (558)
..||.+++.+++... ..+.+..+++++.++|.+.++.++.+++. .|++|..|.+.+...+
T Consensus 212 ---------~~i~~~~v~~~~~~~----------~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~ 272 (319)
T 2chq_A 212 ---------EVVDADTIYQITATA----------RPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREI 272 (319)
T ss_dssp ---------SCBCHHHHHHHTTCC----------CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHCCC----------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 259999999987642 23445666677777999999999999997 9999999998888665
Q ss_pred cc-ccccCC-hHhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHhcC
Q 008664 433 SE-DVGLAD-PLALNQAVSCYQACHFLGMPECNVILAQCVAYLALA 476 (558)
Q Consensus 433 ~e-digla~-~~a~~~~~~~~~a~~~~G~pe~~~~l~~~~~~l~~~ 476 (558)
.. .+.... .+++..+..+-...+ -| .-.++.|...++.||..
T Consensus 273 ~~l~~~~~~l~~~~~~l~~~~~~lk-~~-~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 273 ISMPIKDSLKVQLIDKLGEVDFRLT-EG-ANERIQLDAYLAYLSTL 316 (319)
T ss_dssp HTSCSCTTHHHHHHHHHHHHHHHHH-TT-CCHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHHHh
Confidence 43 122111 112222222333333 34 44566777777777654
No 9
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.2e-29 Score=259.39 Aligned_cols=301 Identities=22% Similarity=0.322 Sum_probs=231.8
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC---ceEEEEecccc
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS---YKFVCLSAVTS 196 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~---~~~i~l~~~~~ 196 (558)
...||+++|+|.+|++++|+++.+ ..+..++..++.++++|+||||||||++|+.+++.+.+. ..++.+++.+.
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIV---KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHH---HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred cCCchhhccCCCCHHHhhCCHHHH---HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 457999999999999999999998 899999999988889999999999999999999997421 35788887654
Q ss_pred -cHHHHHHHHHHHHHhhhh-cCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceee
Q 008664 197 -GVKDVRDAVEDARKLRVK-SNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLT 272 (558)
Q Consensus 197 -~~~~i~~~~~~~~~~~~~-~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~ 272 (558)
+...++..+......... .+++.+|||||+|.++...++.|+.++++ ..+++|+++ +....+.+++.+||..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~--~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 88 RGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC--NYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE--SCGGGSCHHHHHTEEEEE
T ss_pred CchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEe--CCccccCHHHHhhCcEEE
Confidence 334445444443322112 25789999999999999999999999987 457777766 344578899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcc
Q 008664 273 LNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQE 352 (558)
Q Consensus 273 ~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~ 352 (558)
|+|++.+++..++...+.. .++.+++++++.|++.++||+|.+++.++.+....
T Consensus 166 ~~~l~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--------------- 219 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAEN-----------EGLELTEEGLQAILYIAEGDMRRAINILQAAAALD--------------- 219 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHT-----------TTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------
T ss_pred ecCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------------
Confidence 9999999999999998876 77889999999999999999999999999876432
Q ss_pred ccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHH-hCCCChHHHHHHHhhc
Q 008664 353 DESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARML-EGGEQPLYIARRLVRF 431 (558)
Q Consensus 353 ~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll-~~gedp~~I~rrl~~~ 431 (558)
..||.+++.+++... ..+-+..+++++.+++.+.++.++.+++ ..|++|..|.+.+...
T Consensus 220 ----------~~i~~~~v~~~~~~~----------~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~ 279 (327)
T 1iqp_A 220 ----------KKITDENVFMVASRA----------RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKE 279 (327)
T ss_dssp ----------SEECHHHHHHHTTCC----------CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHCCC----------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 259999999887632 3445556666677789999999999999 8899999999988877
Q ss_pred cccccccCChHhHHHHH----HHHHHHHHhCCchhhHHHHHHHHHHhc
Q 008664 432 ASEDVGLADPLALNQAV----SCYQACHFLGMPECNVILAQCVAYLAL 475 (558)
Q Consensus 432 a~edigla~~~a~~~~~----~~~~a~~~~G~pe~~~~l~~~~~~l~~ 475 (558)
+.. ... ++..+..+. .+-...+ -| .-.++.|...++.+|.
T Consensus 280 ~~~-~~~-~~~~l~~~~~~l~~~~~~lk-~~-~~~~~~le~l~~~l~~ 323 (327)
T 1iqp_A 280 VFN-LPI-EEPKKVLLADKIGEYNFRLV-EG-ANEIIQLEALLAQFTL 323 (327)
T ss_dssp GGG-SSS-CHHHHHHHHHHHHHHHHHHH-TT-CCHHHHHHHHHHHHHH
T ss_pred HHh-ccC-CHHHHHHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHHH
Confidence 543 111 223333222 2222222 35 3456666676666654
No 10
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=1.7e-28 Score=250.44 Aligned_cols=299 Identities=21% Similarity=0.303 Sum_probs=233.1
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEecccc
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTS 196 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~ 196 (558)
...||.++|+|.+|++++|+++.+ ..+..++..++.++++|+||||+|||++|+.+++.+.+ ...++.+++.+.
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETI---DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHH---HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHH---HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 357999999999999999999998 89999999988878999999999999999999999732 256888887764
Q ss_pred -cHHHHHHHHHHHHHhh-hh-cCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhccccee
Q 008664 197 -GVKDVRDAVEDARKLR-VK-SNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVL 271 (558)
Q Consensus 197 -~~~~i~~~~~~~~~~~-~~-~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i 271 (558)
+...+++++....... .. .+++.+|||||+|.++...++.|+.++++ ..+++|++| +....+.+++.+||.++
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~--~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 84 RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFAC--NQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEE--SCGGGSCHHHHTTSEEE
T ss_pred cChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEe--CChhhchhHHHhhceEE
Confidence 6777777777665211 11 33588999999999999999999999987 557777776 44557899999999999
Q ss_pred eccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhc
Q 008664 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351 (558)
Q Consensus 272 ~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~ 351 (558)
.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+.+....
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~-------------- 216 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKL-----------EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH-------------- 216 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHH-----------HTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred eecCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--------------
Confidence 99999999999999999877 67789999999999999999999999999887432
Q ss_pred cccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH-HHhCCCChHHHHHHHhh
Q 008664 352 EDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLAR-MLEGGEQPLYIARRLVR 430 (558)
Q Consensus 352 ~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~-ll~~gedp~~I~rrl~~ 430 (558)
..||.+++.+++... +.+.+..++++ ++...+++|+.+ ++..|+++.+|.+.+..
T Consensus 217 -----------~~i~~~~v~~~~~~~----------~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~ 272 (323)
T 1sxj_B 217 -----------GLVNADNVFKIVDSP----------HPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFR 272 (323)
T ss_dssp -----------SSBCHHHHHHHHTSC----------CHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHH
T ss_pred -----------CCcCHHHHHHHHCCC----------CHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 259999999988642 34446666665 788899999999 99999999999998877
Q ss_pred ccccccccCChHhHHHHHH----HHHHHHHhCCchhhHHHHHHHHHHhc
Q 008664 431 FASEDVGLADPLALNQAVS----CYQACHFLGMPECNVILAQCVAYLAL 475 (558)
Q Consensus 431 ~a~edigla~~~a~~~~~~----~~~a~~~~G~pe~~~~l~~~~~~l~~ 475 (558)
.+..- ..-++..+..+.. +....+ -|.. .++.|...++.++.
T Consensus 273 ~~~~l-~~~~~~~l~~~l~~l~~~~~~l~-~~~~-~~l~le~l~~~~~~ 318 (323)
T 1sxj_B 273 VTKNL-AQVKESVRLEMIKEIGLTHMRIL-EGVG-TYLQLASMLAKIHK 318 (323)
T ss_dssp HHHTC-TTSCHHHHHHHHHHHHHHHHHHH-TTCC-CHHHHHHHHHHHHH
T ss_pred HHHhc-ccCCHHHHHHHHHHHHHHHHHHH-hccC-hHHHHHHHHHHHHh
Confidence 65431 1013333333332 222222 3433 45566666666553
No 11
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.96 E-value=1.1e-27 Score=249.51 Aligned_cols=254 Identities=21% Similarity=0.384 Sum_probs=208.0
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCCc-------------
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVSY------------- 186 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~~------------- 186 (558)
..+|.++|||.+|++++|+++.+ ..+..++..++. +.++|+||||||||++++.+++.+.+..
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~---~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHH---HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHH---HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 57899999999999999999998 899999988876 4589999999999999999999986321
Q ss_pred ---------eEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCC
Q 008664 187 ---------KFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTE 254 (558)
Q Consensus 187 ---------~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~ 254 (558)
.++.+++.. .+.+.++.+++.+.... ..+++.||||||+|.++...++.|+.++++ ..+++|++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC-SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhcc-ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 345665543 34556777776654322 345678999999999999999999999998 56788887753
Q ss_pred CCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 255 n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
. ..+.+++.+||..+.|.+++.+++..++...+.+ .++.+++++++.|++.++||+|.+.+.++.+.
T Consensus 159 ~--~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~-----------~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 159 P--QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE-----------EHIAHEPRALQLLARAAEGSLRDALSLTDQAI 225 (373)
T ss_dssp G--GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH-----------HTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred h--HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3 3678999999999999999999999999999877 67889999999999999999999999999987
Q ss_pred HHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008664 335 ITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARM 414 (558)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~l 414 (558)
.... ..||.++|++++.... ....++++.++.+ .|...++.++.++
T Consensus 226 ~~~~------------------------~~i~~~~v~~~~~~~~------~~~~~~l~~~~~~----~~~~~~~~~~~~l 271 (373)
T 1jr3_A 226 ASGD------------------------GQVSTQAVSAMLGTLD------DDQALSLVEAMVE----ANGERVMALINEA 271 (373)
T ss_dssp HHTT------------------------TCBCHHHHHHHTTCCC------HHHHHHHHHHHHH----TCHHHHHHHHHHH
T ss_pred HhcC------------------------CcccHHHHHHHhCCCC------HHHHHHHHHHHHc----CCHHHHHHHHHHH
Confidence 6542 2599999999886431 2334566665555 8999999999999
Q ss_pred HhCCCChHHHH
Q 008664 415 LEGGEQPLYIA 425 (558)
Q Consensus 415 l~~gedp~~I~ 425 (558)
+..|++|..+.
T Consensus 272 ~~~g~~~~~~l 282 (373)
T 1jr3_A 272 AARGIEWEALL 282 (373)
T ss_dssp HHTTCCHHHHH
T ss_pred HHhCcCHHHHH
Confidence 99999996543
No 12
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.95 E-value=9.5e-28 Score=255.80 Aligned_cols=275 Identities=16% Similarity=0.202 Sum_probs=155.5
Q ss_pred CCCccc-cccccCCchHHHHHHHHcCC-CCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccccHHHHHHHHH
Q 008664 132 NINDVV-GQDHLLSPNSLLRSAVCSNR-LPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTSGVKDVRDAVE 206 (558)
Q Consensus 132 ~~~dvi-Gq~~~i~~~~~l~~~i~~~~-~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~~~~~i~~~~~ 206 (558)
+|++++ |+.+.. ....+..+..... .++++|+||||+|||||++++++.+. ....++.+++.... .++...+.
T Consensus 103 tfd~fv~g~~n~~-a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~~~ 180 (440)
T 2z4s_A 103 TFENFVVGPGNSF-AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSMK 180 (440)
T ss_dssp SGGGCCCCTTTHH-HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHHHH
T ss_pred ChhhcCCCCchHH-HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHHH
Confidence 788887 766544 2245555555543 67899999999999999999999882 13778888875542 22222111
Q ss_pred HH--HHhhhhcC-CceEEEEeCCccCCH--HHHHHHHhhHhc----CcEEEEeccCCCCCC---CCcHHhhccc---cee
Q 008664 207 DA--RKLRVKSN-KRTVLFVDEVHRFNK--SQQDSFLPVIED----GSIVFIGATTENPSF---HLITPLLSRC---RVL 271 (558)
Q Consensus 207 ~~--~~~~~~~~-~~~il~IDEid~l~~--~~~~~Ll~~le~----~~iilI~att~n~~~---~l~~aL~sR~---~~i 271 (558)
.. ........ .+.+|||||+|.+.. ..++.|+..++. +..++|+ | .++.. .+.++|++|| .++
T Consensus 181 ~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIit-t-~~~~~~l~~l~~~L~sR~~~g~~i 258 (440)
T 2z4s_A 181 EGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC-S-DREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_dssp TTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEE-E-SSCGGGCSSCCHHHHHHHHSSBCC
T ss_pred cccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEE-E-CCCHHHHHHHHHHHHhhccCCeEE
Confidence 10 01111223 678999999999986 678888887643 5555553 3 24333 3789999999 689
Q ss_pred eccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhc
Q 008664 272 TLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQ 351 (558)
Q Consensus 272 ~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~ 351 (558)
.+.+++.+++..++.+.+.. .++.++++++++|++.++||+|.+.++|+.+...+...
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~-----------~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~----------- 316 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEI-----------EHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETT----------- 316 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHH-----------HTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHS-----------
T ss_pred EeCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999998876 67789999999999999999999999999999887541
Q ss_pred cccCCCCCCCccccCHHHHHHHHhhcc-------cc-ccCC---CcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 008664 352 EDESDGCSPYVALVTLDDAKEAFQCKH-------LA-YDRA---GEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQ 420 (558)
Q Consensus 352 ~~~~~~~~~~~~~It~e~v~~~l~~~~-------~~-~d~~---~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~ged 420 (558)
...||.+++++++.... .. +++- ...||++.++.++|.++++ + +|++|++.
T Consensus 317 ----------~~~It~~~~~~~l~~~~~~~~~~~i~~~~~i~~~v~~~y~i~~~~~~s~~r~~---~-~~~~r~i~---- 378 (440)
T 2z4s_A 317 ----------GKEVDLKEAILLLKDFIKPNRVKAMDPIDELIEIVAKVTGVPREEILSNSRNV---K-ALTARRIG---- 378 (440)
T ss_dssp ----------SSCCCHHHHHHHTSTTTCC---------------------------------------------------
T ss_pred ----------CCCCCHHHHHHHHHHHhhccccccCChHHHHHHHHHHHhCCCHHHhcCccCCc---c-cchHHHHH----
Confidence 23699999999998654 23 4443 6789999999999998864 3 89999996
Q ss_pred hHHHHHHHhhccccccccCChHhHHHHHHHH
Q 008664 421 PLYIARRLVRFASEDVGLADPLALNQAVSCY 451 (558)
Q Consensus 421 p~~I~rrl~~~a~edigla~~~a~~~~~~~~ 451 (558)
+||+|+|+..+++|||+++...-+.++.+.
T Consensus 379 -~yl~r~l~~~s~~~IG~~~~rdhstv~~a~ 408 (440)
T 2z4s_A 379 -MYVAKNYLKSSLRTIAEKFNRSHPVVVDSV 408 (440)
T ss_dssp -------------------------------
T ss_pred -HHHHHHHhCCCHHHHHHHhCCChhHHHHHH
Confidence 799999999999999998755444443333
No 13
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.95 E-value=3e-27 Score=244.93 Aligned_cols=303 Identities=17% Similarity=0.248 Sum_probs=205.4
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHH-HcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-C--------------
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAV-CSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-S-------------- 185 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i-~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~-------------- 185 (558)
.+|+++|||++|++++||++.+ ..+..++ ..++.++++|+||+|+||||+++++++.+.+ .
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~---~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELT---NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHH---HHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CcchhccCCCCHHHhcCCHHHH---HHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 3899999999999999999988 8999998 7777777999999999999999999996531 1
Q ss_pred ------------ceEEEEecccccHH---HHHHHHHHHHHhhhh---------cCCceEEEEeCCccCCHHHHHHHHhhH
Q 008664 186 ------------YKFVCLSAVTSGVK---DVRDAVEDARKLRVK---------SNKRTVLFVDEVHRFNKSQQDSFLPVI 241 (558)
Q Consensus 186 ------------~~~i~l~~~~~~~~---~i~~~~~~~~~~~~~---------~~~~~il~IDEid~l~~~~~~~Ll~~l 241 (558)
..++.+++...+.. .+++.++.+...... .+++.||||||++.++...++.|++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred ccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 12455555443322 355555554321101 336789999999999999999999999
Q ss_pred hc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC-hHHHHHHHHh
Q 008664 242 ED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN-HDAIEFLCSN 318 (558)
Q Consensus 242 e~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~-~~al~~La~~ 318 (558)
++ ...++|++|+ ....+.+++.|||.++.|++++.+++..++..++.+ +++.++ +++++.|++.
T Consensus 159 e~~~~~~~~Il~t~--~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 159 EKYSKNIRLIMVCD--SMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN-----------ERIQLETKDILKRIAQA 225 (354)
T ss_dssp HHSTTTEEEEEEES--CSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH-----------HTCEECCSHHHHHHHHH
T ss_pred HhhcCCCEEEEEeC--CHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH-----------cCCCCCcHHHHHHHHHH
Confidence 87 4566777663 334688999999999999999999999999999987 788899 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Q 008664 319 CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKS 398 (558)
Q Consensus 319 s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks 398 (558)
++||+|.+++.|+.+...... .||.+++ +.. .+. .+..++++.++.+.
T Consensus 226 ~~G~~r~a~~~l~~~~~~~~~------------------------~i~~~~~---~~~----~~~-~~~~~~l~~~i~~~ 273 (354)
T 1sxj_E 226 SNGNLRVSLLMLESMALNNEL------------------------ALKSSSP---IIK----PDW-IIVIHKLTRKIVKE 273 (354)
T ss_dssp HTTCHHHHHHHHTHHHHTTTT------------------------EECSSCC---CCC----CHH-HHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhCCC------------------------CcCcCcC---CCC----ccH-HHHHHHHHHHHHHh
Confidence 999999999999998876431 1332211 000 000 01123444444432
Q ss_pred hcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHhHHHH---HHHHHHHHHhCCchhhHHHHHHHHHHh
Q 008664 399 MRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQA---VSCYQACHFLGMPECNVILAQCVAYLA 474 (558)
Q Consensus 399 ~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~---~~~~~a~~~~G~pe~~~~l~~~~~~l~ 474 (558)
-...+.+.+..++..++..|.++..|.+.+......--.+ +...+..+ .+-.+..-..|. ..++.|...++.+|
T Consensus 274 ~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~-~~~~l~~~~~~l~~~d~~l~~g~-~~~~~le~~~~~~~ 350 (354)
T 1sxj_E 274 RSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETL-NTTNKSSIIEYSSVFDERLSLGN-KAIFHLEGFIAKVM 350 (354)
T ss_dssp CSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTS-CHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 1112233445566778888999999998887655431112 22222222 222333333463 45666666665554
No 14
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.94 E-value=1.1e-26 Score=238.19 Aligned_cols=275 Identities=16% Similarity=0.210 Sum_probs=202.4
Q ss_pred CCCCccc-cccccCCchHHHHHHHHcC--CCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHHH
Q 008664 131 VNINDVV-GQDHLLSPNSLLRSAVCSN--RLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVE 206 (558)
Q Consensus 131 ~~~~dvi-Gq~~~i~~~~~l~~~i~~~--~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~~ 206 (558)
.+|++++ |+.+... ...+..++... ..++++|+||||||||++++++++.+.. ...++.+++......-+..+..
T Consensus 8 ~~f~~fv~g~~~~~a-~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (324)
T 1l8q_A 8 YTLENFIVGEGNRLA-YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKK 86 (324)
T ss_dssp CCSSSCCCCTTTHHH-HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHH-HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHc
Confidence 3678887 6655432 24566666654 3478999999999999999999999821 2788888875442111111111
Q ss_pred HH-HHhhhhcCCceEEEEeCCccCCH--HHHHHHHhhHh----cCcEEEEeccCCCCC--CCCcHHhhccc---ceeecc
Q 008664 207 DA-RKLRVKSNKRTVLFVDEVHRFNK--SQQDSFLPVIE----DGSIVFIGATTENPS--FHLITPLLSRC---RVLTLN 274 (558)
Q Consensus 207 ~~-~~~~~~~~~~~il~IDEid~l~~--~~~~~Ll~~le----~~~iilI~att~n~~--~~l~~aL~sR~---~~i~~~ 274 (558)
.. .........+.+|||||+|.+.. ..++.|+.+++ .+..+++++ +..+. ..++++|.+|| .++.|+
T Consensus 87 ~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~-~~~~~~l~~l~~~L~sR~~~~~~i~l~ 165 (324)
T 1l8q_A 87 GTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILAS-DRHPQKLDGVSDRLVSRFEGGILVEIE 165 (324)
T ss_dssp TCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEE-SSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred CcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEe-cCChHHHHHhhhHhhhcccCceEEEeC
Confidence 00 00011112478999999999985 56777777654 355555444 33332 26889999999 689999
Q ss_pred CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhcccc
Q 008664 275 PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDE 354 (558)
Q Consensus 275 ~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~ 354 (558)
| +.+++..++...+.. .++.++++++++|++.+ ||+|.+.++|+.++..... .... .+
T Consensus 166 ~-~~~e~~~il~~~~~~-----------~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~------~l~~---~~ 223 (324)
T 1l8q_A 166 L-DNKTRFKIIKEKLKE-----------FNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFE------GLER---KE 223 (324)
T ss_dssp C-CHHHHHHHHHHHHHH-----------TTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHH------HHHH---HH
T ss_pred C-CHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHH------Hhcc---cc
Confidence 9 999999999999876 67889999999999999 9999999999998876100 0000 01
Q ss_pred CCCCCCCcccc-CHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccc
Q 008664 355 SDGCSPYVALV-TLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFAS 433 (558)
Q Consensus 355 ~~~~~~~~~~I-t~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~ 433 (558)
...| |.+++++++.. +|++.++.+++.++++. +|++|++ ++||+|+++..++
T Consensus 224 -------~~~i~t~~~i~~~~~~-----------~~~~~~~~i~s~~~~~~----~~~~r~i-----~~~l~r~~~~~s~ 276 (324)
T 1l8q_A 224 -------RKERDKLMQIVEFVAN-----------YYAVKVEDILSDKRNKR----TSEARKI-----AMYLCRKVCSASL 276 (324)
T ss_dssp -------HHHHHHHHHHHHHHHH-----------HHSCCHHHHSSCCCCSS----SHHHHHH-----HHHHHHHHHCCCH
T ss_pred -------ccCCCCHHHHHHHHHH-----------HhCCCHHHHhcCCCCCc----cchHHHH-----HHHHHHHHhCCCH
Confidence 2468 99999998873 78999999999999987 7899998 7899999999999
Q ss_pred cccccCC-hHhHHHHHHHHHHHHH
Q 008664 434 EDVGLAD-PLALNQAVSCYQACHF 456 (558)
Q Consensus 434 edigla~-~~a~~~~~~~~~a~~~ 456 (558)
+|||.++ +..-+.++.+.+.++.
T Consensus 277 ~~ig~~~g~~~~~tv~~~~~~~~~ 300 (324)
T 1l8q_A 277 IEIARAFKRKDHTTVIHAIRSVEE 300 (324)
T ss_dssp HHHHHHSSCCCSTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999998 8888777777777764
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=6.6e-25 Score=225.97 Aligned_cols=236 Identities=24% Similarity=0.344 Sum_probs=181.8
Q ss_pred CCCCCchhhcCCCCCCccccccccCCchHHHHHHHHc-----CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 119 VPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS-----NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 119 ~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-----~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.....|.++|+|.+|++++|++..+ ..+..++.. ....++||+||||||||++|+++++.++ ..|+.+++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~---~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~~~~~~~ 88 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIK---KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--ANIKTTAA 88 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHH---HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred chhhhhhhccCCCCHHHhCChHHHH---HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEecc
Confidence 4456899999999999999999988 777777764 3447899999999999999999999998 88899988
Q ss_pred ccc-cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc--------------------EEEEecc
Q 008664 194 VTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--------------------IVFIGAT 252 (558)
Q Consensus 194 ~~~-~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~--------------------iilI~at 252 (558)
... ....+...+. ....+++|||||||.++...++.|+..++++. +++|++|
T Consensus 89 ~~~~~~~~~~~~~~-------~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 89 PMIEKSGDLAAILT-------NLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp GGCCSHHHHHHHHH-------TCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred hhccchhHHHHHHH-------hccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 654 3333433332 23467899999999999999999999998854 6788887
Q ss_pred CCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHH
Q 008664 253 TENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALE 331 (558)
Q Consensus 253 t~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le 331 (558)
+ ....+.++|++|| .++.|++++.+++..++...+.. .++.+++++++.|++.|+||+|.+.++++
T Consensus 162 n--~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-----------~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 162 T--RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-----------LNKTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp S--CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------TTCEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred C--CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4 4446889999999 79999999999999999998877 67789999999999999999999999999
Q ss_pred HHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcch--HHHHHHHHHHhcCC
Q 008664 332 ISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEH--YNLISALHKSMRGN 402 (558)
Q Consensus 332 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~--~d~isal~ks~rgs 402 (558)
.+...+... + ...|+.+++..++.... .+..+... ..++.++.+. .+.
T Consensus 229 ~~~~~a~~~-------------~-------~~~i~~~~~~~~~~~~~--~~~~~l~~~e~~~l~~l~~~-~~~ 278 (338)
T 3pfi_A 229 RVRDFADVN-------------D-------EEIITEKRANEALNSLG--VNELGFDAMDLRYLELLTAA-KQK 278 (338)
T ss_dssp HHHHHHHHT-------------T-------CSEECHHHHHHHHHHHT--CCTTCCCHHHHHHHHHHHHS-CSC
T ss_pred HHHHHHHhh-------------c-------CCccCHHHHHHHHHHhC--CcccCCCHHHHHHHHHHHHh-cCC
Confidence 987665431 2 34699999999887633 22323333 3477777775 444
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.93 E-value=4.5e-25 Score=229.76 Aligned_cols=226 Identities=21% Similarity=0.338 Sum_probs=180.2
Q ss_pred CCCCchhhcCCCC-CCccccccccCCchHHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-
Q 008664 120 PHAPLSERMRPVN-INDVVGQDHLLSPNSLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT- 195 (558)
Q Consensus 120 ~~~~l~~~~rp~~-~~dviGq~~~i~~~~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~- 195 (558)
...++.++++|.. |++++|+++.+.....+...+..+.. +++||+||||||||++|+++++.+++..+++.+++..
T Consensus 29 ~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 29 RGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred hccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 3467889999998 99999999987444557777777765 4999999999999999999999998666888777533
Q ss_pred --------------------------------------------------cc-----HHHHHHHHHHHHHhhhhcCC---
Q 008664 196 --------------------------------------------------SG-----VKDVRDAVEDARKLRVKSNK--- 217 (558)
Q Consensus 196 --------------------------------------------------~~-----~~~i~~~~~~~~~~~~~~~~--- 217 (558)
.+ ...++..+..+.......+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (368)
T 3uk6_A 109 FSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEI 188 (368)
T ss_dssp SCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---
T ss_pred hhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccc
Confidence 11 34455555555432212222
Q ss_pred -ceEEEEeCCccCCHHHHHHHHhhHhcC--cEEE---------EeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHH
Q 008664 218 -RTVLFVDEVHRFNKSQQDSFLPVIEDG--SIVF---------IGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285 (558)
Q Consensus 218 -~~il~IDEid~l~~~~~~~Ll~~le~~--~iil---------I~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL 285 (558)
++||||||+|.++...++.|++.+++. .+++ |++|+.|+...++++|++||.++.|+|++.+++..++
T Consensus 189 ~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 189 IPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred cCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 469999999999999999999999873 2332 3334456667899999999999999999999999999
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHhCC-CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccc
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCD-GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~-Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (558)
+..+.. .++.+++++++.|++.+. ||+|.++++|+.+...+..+ + ...
T Consensus 269 ~~~~~~-----------~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-------------~-------~~~ 317 (368)
T 3uk6_A 269 RIRCEE-----------EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-------------K-------GTE 317 (368)
T ss_dssp HHHHHH-----------TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-------------T-------CSS
T ss_pred HHHHHH-----------cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-------------C-------CCC
Confidence 999877 678899999999999988 99999999999998876431 2 457
Q ss_pred cCHHHHHHHHhh
Q 008664 365 VTLDDAKEAFQC 376 (558)
Q Consensus 365 It~e~v~~~l~~ 376 (558)
||.+++++++..
T Consensus 318 It~~~v~~a~~~ 329 (368)
T 3uk6_A 318 VQVDDIKRVYSL 329 (368)
T ss_dssp BCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999874
No 17
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.93 E-value=1.6e-24 Score=207.75 Aligned_cols=215 Identities=27% Similarity=0.430 Sum_probs=177.3
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC---CCceEEEEecccc-
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA---VSYKFVCLSAVTS- 196 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~---~~~~~i~l~~~~~- 196 (558)
..||.++++|.++++++|++..+ ..+..++..+..++++|+||||||||++++.+++.+. ....++.+++...
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVI---QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHH---HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred hhhHHHhcCCCCHHHHcCcHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 46899999999999999999988 8999999988777899999999999999999999863 1256788887654
Q ss_pred cHHHHHHHHHHHHHhh-hhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeec
Q 008664 197 GVKDVRDAVEDARKLR-VKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTL 273 (558)
Q Consensus 197 ~~~~i~~~~~~~~~~~-~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~ 273 (558)
+...+...+....... ...+.+.+|||||+|.+....++.|+.+++. ..+++|+++ +....+.+++.+||..+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~--~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 81 GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC--NYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE--SCGGGSCHHHHTTSEEEEC
T ss_pred ChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe--CChhhcCHHHHHhCceeec
Confidence 4444554444433211 1125678999999999999999999999987 456777766 3445788999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccc
Q 008664 274 NPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQED 353 (558)
Q Consensus 274 ~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~ 353 (558)
++++.+++..++...+.. .+..+++++++.|++.++||+|.+++.++.++..+
T Consensus 159 ~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~---------------- 211 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEK-----------EGVKITEDGLEALIYISGGDFRKAINALQGAAAIG---------------- 211 (226)
T ss_dssp CCCCHHHHHHHHHHHHHH-----------HTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----------------
T ss_pred CCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC----------------
Confidence 999999999999998876 56779999999999999999999999999988664
Q ss_pred cCCCCCCCccccCHHHHHHHHhh
Q 008664 354 ESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 354 ~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
..||.++++++++.
T Consensus 212 ---------~~I~~~~v~~~~~~ 225 (226)
T 2chg_A 212 ---------EVVDADTIYQITAT 225 (226)
T ss_dssp ---------SCBCHHHHHHHHHT
T ss_pred ---------ceecHHHHHHHhcC
Confidence 25999999998863
No 18
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.93 E-value=7.1e-25 Score=228.92 Aligned_cols=292 Identities=19% Similarity=0.222 Sum_probs=217.2
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHc----CCCCeEEEEcCCCchHHHHHHHHHHHhC-------CCceEEEE
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS----NRLPSIIFWGPPGTGKTTLAKAIVNSVA-------VSYKFVCL 191 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~----~~~~~~LL~GppGtGKTtLa~~la~~l~-------~~~~~i~l 191 (558)
+|...+.| ++++|++..+ ..+..++.. +...+++|+||||||||++++.+++.+. ....++.+
T Consensus 11 ~l~~~~~p---~~~~gr~~~~---~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 11 VLLPDYVP---DVLPHREAEL---RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp HHSTTCCC---SCCTTCHHHH---HHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hcCCccCC---CCCCCHHHHH---HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 45556666 6789999887 788877743 4457899999999999999999999882 13889999
Q ss_pred ecccccHH--H------------------HHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--HHHHHHhhHh-------
Q 008664 192 SAVTSGVK--D------------------VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS--QQDSFLPVIE------- 242 (558)
Q Consensus 192 ~~~~~~~~--~------------------i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~--~~~~Ll~~le------- 242 (558)
++...... - ...++..........+.+.+|||||+|.+... .++.|..+++
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 98653211 1 11222222222212345779999999999876 6676665553
Q ss_pred cCcEEEEeccCCCCC-CCCcHHhhccc--ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC
Q 008664 243 DGSIVFIGATTENPS-FHLITPLLSRC--RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC 319 (558)
Q Consensus 243 ~~~iilI~att~n~~-~~l~~aL~sR~--~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s 319 (558)
...+++|++|+..+. ..+.+.+.+|| ..+.|+|++.+++..++...+.. +..+..+++++++.+++.+
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~---------~~~~~~~~~~~~~~l~~~~ 235 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE---------AFNPGVLDPDVVPLCAALA 235 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH---------HBCTTTBCSSHHHHHHHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh---------hccCCCCCHHHHHHHHHHH
Confidence 456788888866533 57889999999 68999999999999999998864 1145678999999999998
Q ss_pred C---CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHH
Q 008664 320 D---GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALH 396 (558)
Q Consensus 320 ~---Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ 396 (558)
. ||+|.++++++.+...+... + ...|+.+++++++.... -+.+.
T Consensus 236 ~~~~G~~r~~~~~l~~a~~~a~~~-------------~-------~~~i~~~~v~~a~~~~~-------------~~~~~ 282 (387)
T 2v1u_A 236 AREHGDARRALDLLRVAGEIAERR-------------R-------EERVRREHVYSARAEIE-------------RDRVS 282 (387)
T ss_dssp HSSSCCHHHHHHHHHHHHHHHHHT-------------T-------CSCBCHHHHHHHHHHHH-------------HHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHc-------------C-------CCCcCHHHHHHHHHHHh-------------hchHH
Confidence 7 99999999999998776531 2 35799999999987531 12467
Q ss_pred HHhcCCCHHHHHHHHHHH-HhCCCChH---HHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchhhH
Q 008664 397 KSMRGNDADAAIYWLARM-LEGGEQPL---YIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464 (558)
Q Consensus 397 ks~rgsd~~aal~~l~~l-l~~gedp~---~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~~~ 464 (558)
+++++.+++..++|++.+ +..|+++. .|.+ .....++++| ++|.+...+..+.+....+|++|++.
T Consensus 283 ~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 283 EVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYE-RYKELTSTLG-LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHH-HHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHH-HHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 888999999999998877 55566642 2334 4445668888 78989999999999999999999853
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.92 E-value=1.5e-23 Score=214.31 Aligned_cols=258 Identities=24% Similarity=0.326 Sum_probs=192.4
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc-----CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc-
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS-----NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG- 197 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-----~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~- 197 (558)
+.++++|.+|++++|++..+ ..+..++.. ....+++|+||||||||++|+++++.++ .+++.+++....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~---~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLK---QKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--VNLRVTSGPAIEK 76 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHH---HHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--CCEEEECTTTCCS
T ss_pred CccccCcccHHHhhCHHHHH---HHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeccccCC
Confidence 35789999999999999887 667666653 2347899999999999999999999998 788888876542
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc--------------------EEEEeccCCCCC
Q 008664 198 VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS--------------------IVFIGATTENPS 257 (558)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~--------------------iilI~att~n~~ 257 (558)
..++...+.. ....+++|||||+|.+....++.|+.+++++. +++|++|+.+
T Consensus 77 ~~~l~~~l~~------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-- 148 (324)
T 1hqc_A 77 PGDLAAILAN------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-- 148 (324)
T ss_dssp HHHHHHHHTT------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC--
T ss_pred hHHHHHHHHH------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc--
Confidence 2233322221 13467899999999999999999999998753 5677777443
Q ss_pred CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008664 258 FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAIT 336 (558)
Q Consensus 258 ~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~ 336 (558)
..+.++|.+|| .++.|.+++.+++..++...+.. .++.+++++++.|+++++|++|.+.++++.+...
T Consensus 149 ~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 149 GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL-----------LGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT-----------TTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 47788999999 69999999999999999998876 5678999999999999999999999999998766
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE 416 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~ 416 (558)
+... + ...|+.+++..++...........+...+++.++.+..+|+... ..-+++.
T Consensus 218 a~~~-------------~-------~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~--~~~~a~~-- 273 (324)
T 1hqc_A 218 AQVA-------------G-------EEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVG--LATLATA-- 273 (324)
T ss_dssp STTT-------------S-------CSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCC--HHHHHHH--
T ss_pred HHHh-------------c-------CCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCch--HHHHHHH--
Confidence 5431 1 34699999998887543222222233457889999888877321 1122333
Q ss_pred CCCChHHHHHHHh
Q 008664 417 GGEQPLYIARRLV 429 (558)
Q Consensus 417 ~gedp~~I~rrl~ 429 (558)
.|.+...+.++|-
T Consensus 274 lgi~~~tl~~~l~ 286 (324)
T 1hqc_A 274 LSEDPGTLEEVHE 286 (324)
T ss_dssp TTSCHHHHHHHTH
T ss_pred hCCCHHHHHHHHh
Confidence 3566666665544
No 20
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.92 E-value=2.3e-23 Score=214.29 Aligned_cols=253 Identities=25% Similarity=0.357 Sum_probs=191.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcC-----CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSN-----RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~-----~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
...|.++++|++|++++|+++.+ ..+...+..+ ...+++|+||||+|||||++++++.++ ..+...++..
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~---~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~~~~sg~~ 86 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVK---KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNIHVTSGPV 86 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHH---HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCEEEEETTT
T ss_pred HHHHHHHcCCccHHHccCcHHHH---HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEechH
Confidence 44689999999999999998887 7777776543 347899999999999999999999998 5555554432
Q ss_pred c-cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC--------------------cEEEEeccCC
Q 008664 196 S-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG--------------------SIVFIGATTE 254 (558)
Q Consensus 196 ~-~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~--------------------~iilI~att~ 254 (558)
. ...++..++.. .....|+||||+|.+.+..++.|+..++.. .+.++++|+
T Consensus 87 ~~~~~~l~~~~~~-------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~- 158 (334)
T 1in4_A 87 LVKQGDMAAILTS-------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT- 158 (334)
T ss_dssp CCSHHHHHHHHHH-------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES-
T ss_pred hcCHHHHHHHHHH-------ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC-
Confidence 2 23344333221 235679999999999998889888877642 256777664
Q ss_pred CCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 255 NPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 255 n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
....+++++++||. .+.|.+++.+++.++|++.+.. .++.++++++..|++.+.|++|.++++|+.+
T Consensus 159 -~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-----------~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 159 -RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-----------MDVEIEDAAAEMIAKRSRGTPRIAIRLTKRV 226 (334)
T ss_dssp -CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------TTCCBCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred -CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-----------cCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33578999999995 6889999999999999998876 5778999999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcch--HHHHHHHHHHhcCCCHHHHHHHH
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEH--YNLISALHKSMRGNDADAAIYWL 411 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~--~d~isal~ks~rgsd~~aal~~l 411 (558)
...+... + ...||.+++++++... .+|+.|..+ ++++++++++++|+.. .+..+
T Consensus 227 ~~~a~~~-------------~-------~~~It~~~v~~al~~~--~~~~~~l~~~~~~~l~~~~~~~~~~~~--~~~~l 282 (334)
T 1in4_A 227 RDMLTVV-------------K-------ADRINTDIVLKTMEVL--NIDDEGLDEFDRKILKTIIEIYRGGPV--GLNAL 282 (334)
T ss_dssp HHHHHHH-------------T-------CSSBCHHHHHHHHHHH--TCCTTCCCHHHHHHHHHHHHHSTTCCB--CHHHH
T ss_pred HHHHHHc-------------C-------CCCcCHHHHHHHHHHh--CCCcCCCCHHHHHHHHHHHHHhCCCcc--hHHHH
Confidence 7776431 2 3479999999999873 567767655 5799999999988764 23445
Q ss_pred HHHHhCCCChHHH
Q 008664 412 ARMLEGGEQPLYI 424 (558)
Q Consensus 412 ~~ll~~gedp~~I 424 (558)
+.. -|+++..+
T Consensus 283 ~~~--~~~~~~t~ 293 (334)
T 1in4_A 283 AAS--LGVEADTL 293 (334)
T ss_dssp HHH--HTSCHHHH
T ss_pred HHH--hCCCcchH
Confidence 544 35666543
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.92 E-value=6e-24 Score=206.31 Aligned_cols=215 Identities=23% Similarity=0.431 Sum_probs=171.6
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCC-CeEEEEcCCCchHHHHHHHHHHHhCCCc------------
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRL-PSIIFWGPPGTGKTTLAKAIVNSVAVSY------------ 186 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~-~~~LL~GppGtGKTtLa~~la~~l~~~~------------ 186 (558)
...+|.++|+|..+++++|++..+ ..+..++..+.. +.++|+||||+|||++++.+++.+....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHH---HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 457899999999999999999988 899999988765 4699999999999999999999875211
Q ss_pred ----------eEEEEeccc-ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccC
Q 008664 187 ----------KFVCLSAVT-SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATT 253 (558)
Q Consensus 187 ----------~~i~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att 253 (558)
.++.++... .....++.++....... ..+++.+|||||+|.++...++.|+..+++ ..+++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC-SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch-hcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 345555433 23444555544332111 234578999999999999999999999987 4677777774
Q ss_pred CCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 254 ENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 254 ~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
. ...+.+++.+|+..+.|++++.+++..++...+.. .++.+++++++.|++.++|++|.+.++++.+
T Consensus 165 ~--~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 165 D--PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE-----------EHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp C--GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH-----------TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C--hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 34678899999999999999999999999999877 6778899999999999999999999999998
Q ss_pred HHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 334 AITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
+..+. ..||.++++++++
T Consensus 232 ~~~~~------------------------~~i~~~~v~~~~~ 249 (250)
T 1njg_A 232 IASGD------------------------GQVSTQAVSAMLG 249 (250)
T ss_dssp HTTTT------------------------SSBCHHHHHHHSC
T ss_pred HhccC------------------------ceecHHHHHHHhC
Confidence 65432 3699999998864
No 22
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=3.8e-24 Score=232.73 Aligned_cols=201 Identities=18% Similarity=0.290 Sum_probs=155.2
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHc-----------------CCCCeEEEEcCCCchHHHHHHHHHH
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS-----------------NRLPSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-----------------~~~~~~LL~GppGtGKTtLa~~la~ 180 (558)
.....+|+++|+|.+|++++|+++.+ ..+..++.. +..+++||+||||||||++|+++|+
T Consensus 23 ~~~~~lW~ekyrP~~~~dliG~~~~~---~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 23 MASDKLWTVKYAPTNLQQVCGNKGSV---MKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp ---CCCHHHHTCCSSGGGCCSCHHHH---HHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCCcccccCCCCHHHhcCCHHHH---HHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44567999999999999999999998 888888875 1347899999999999999999999
Q ss_pred HhCCCceEEEEecccccHHH-HHHHHHHHHHh-------------hhhcCCceEEEEeCCccCCHHHH---HHHHhhHhc
Q 008664 181 SVAVSYKFVCLSAVTSGVKD-VRDAVEDARKL-------------RVKSNKRTVLFVDEVHRFNKSQQ---DSFLPVIED 243 (558)
Q Consensus 181 ~l~~~~~~i~l~~~~~~~~~-i~~~~~~~~~~-------------~~~~~~~~il~IDEid~l~~~~~---~~Ll~~le~ 243 (558)
.++ ..++++++.+..... +...+...... ....+.+.||||||+|.+....+ +.|+.+++.
T Consensus 100 ~l~--~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 100 ELG--YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp HTT--CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred HcC--CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 998 899999997764322 22222211000 00124678999999999987544 788888887
Q ss_pred CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCH
Q 008664 244 GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDA 323 (558)
Q Consensus 244 ~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~ 323 (558)
....+|++++.... ...+++.+||..+.|++++.+++..+|..++.. +++.+++++++.|++.++||+
T Consensus 178 ~~~~iIli~~~~~~-~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~-----------~~~~i~~~~l~~la~~s~Gdi 245 (516)
T 1sxj_A 178 TSTPLILICNERNL-PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR-----------EKFKLDPNVIDRLIQTTRGDI 245 (516)
T ss_dssp CSSCEEEEESCTTS-STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH-----------HTCCCCTTHHHHHHHHTTTCH
T ss_pred cCCCEEEEEcCCCC-ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHcCCcH
Confidence 55333333332222 233568899999999999999999999998877 678899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008664 324 RVALNALEISAI 335 (558)
Q Consensus 324 R~~~~~Le~a~~ 335 (558)
|.+++.|+.++.
T Consensus 246 R~~i~~L~~~~~ 257 (516)
T 1sxj_A 246 RQVINLLSTIST 257 (516)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 23
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.89 E-value=5.3e-22 Score=207.37 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=207.1
Q ss_pred CCCCchhhcCCCCCCccccccccCCchHHHHHHHHc----CCCCeEEEEcCCCchHHHHHHHHHHHh-----------CC
Q 008664 120 PHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS----NRLPSIIFWGPPGTGKTTLAKAIVNSV-----------AV 184 (558)
Q Consensus 120 ~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~----~~~~~~LL~GppGtGKTtLa~~la~~l-----------~~ 184 (558)
...+|..+++| ++++|+++.+ ..+..++.. +..++++|+||||||||++++.+++.+ +
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~---~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~- 81 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDIL---RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKD- 81 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHH---HHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTT-
T ss_pred cHhhcCCccCC---CCCCChHHHH---HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCC-
Confidence 34578888888 6799999887 666655543 445789999999999999999999987 5
Q ss_pred CceEEEEeccccc---HHHHH-------------------HHHHHHHHhhhhcCCceEEEEeCCccCCHHH-HHH-HHhh
Q 008664 185 SYKFVCLSAVTSG---VKDVR-------------------DAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ-QDS-FLPV 240 (558)
Q Consensus 185 ~~~~i~l~~~~~~---~~~i~-------------------~~~~~~~~~~~~~~~~~il~IDEid~l~~~~-~~~-Ll~~ 240 (558)
..++.+++.... ..-+. .++....... ...+.+|||||+|.+.... ++. |..+
T Consensus 82 -~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~vlilDEi~~l~~~~~~~~~l~~l 158 (384)
T 2qby_B 82 -VKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT--RNIRAIIYLDEVDTLVKRRGGDIVLYQL 158 (384)
T ss_dssp -CEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH--SSSCEEEEEETTHHHHHSTTSHHHHHHH
T ss_pred -ceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh--ccCCCEEEEECHHHhccCCCCceeHHHH
Confidence 888999876432 11111 2222222211 1223399999999987643 444 4444
Q ss_pred Hhc-CcEEEEeccCCCCC-CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHH
Q 008664 241 IED-GSIVFIGATTENPS-FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCS 317 (558)
Q Consensus 241 le~-~~iilI~att~n~~-~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~ 317 (558)
++. ..+.+|++|+..+. ..+.+++.+|+ ..+.|+|++.+++..++...+.. +.....+++++++.+++
T Consensus 159 ~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~---------~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 159 LRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY---------GLIKGTYDDEILSYIAA 229 (384)
T ss_dssp HTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH---------TSCTTSCCSHHHHHHHH
T ss_pred hcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh---------hcccCCcCHHHHHHHHH
Confidence 443 67888888865442 56889999996 69999999999999999998864 12456789999999999
Q ss_pred hCC---CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHH
Q 008664 318 NCD---GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISA 394 (558)
Q Consensus 318 ~s~---Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isa 394 (558)
.+. ||+|.++++|+.+...+.. ...|+.+++++++.... -+.
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~~----------------------~~~i~~~~v~~~~~~~~-------------~~~ 274 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLASG----------------------GGIIRKEHVDKAIVDYE-------------QER 274 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTTS----------------------SSCCCHHHHHHHHHHHH-------------HHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhcC----------------------CCccCHHHHHHHHHHHh-------------cch
Confidence 977 9999999999999887642 34799999999987531 145
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchhh
Q 008664 395 LHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECN 463 (558)
Q Consensus 395 l~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~~ 463 (558)
+.+++++.++....+|.+-+. ++....+. +....+++++| .+|.....+..+.......|++|++
T Consensus 275 ~~~~~~~l~~~~~~~l~al~~--~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 275 LIEAVKALPFHYKLALRSLIE--SEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHSSCHHHHHHHHHHHT--CCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCHHHHHHHHHHHH--hcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 778888888887777666554 22212333 33334456777 6777777888888888999998874
No 24
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.89 E-value=1.3e-21 Score=201.84 Aligned_cols=289 Identities=12% Similarity=0.079 Sum_probs=212.6
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC-c---eEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEE
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-Y---KFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFV 223 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~-~---~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~I 223 (558)
.+.+.++..-.+.+||+||+|+||++.++.+++.+.+. . ..+.++ +..+++++++.+...+ ..+.+.|++|
T Consensus 8 ~l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~p-lf~~~kvvii 82 (343)
T 1jr3_D 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID----PNTDWNAIFSLCQAMS-LFASRQTLLL 82 (343)
T ss_dssp THHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC----TTCCHHHHHHHHHHHH-HCCSCEEEEE
T ss_pred HHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec----CCCCHHHHHHHhcCcC-CccCCeEEEE
Confidence 44555554445889999999999999999999876411 1 233333 2356788888776654 5678999999
Q ss_pred eCCcc-CCHHHHHHHHhhHhc--CcEEEEeccCC-CC---CCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhccc
Q 008664 224 DEVHR-FNKSQQDSFLPVIED--GSIVFIGATTE-NP---SFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGL 296 (558)
Q Consensus 224 DEid~-l~~~~~~~Ll~~le~--~~iilI~att~-n~---~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~ 296 (558)
||+|. ++++.++.|++++++ ...++|++++. ++ ..++.+++.+||.++.|.+++.+++..++...+.+
T Consensus 83 ~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~----- 157 (343)
T 1jr3_D 83 LLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ----- 157 (343)
T ss_dssp ECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH-----
T ss_pred ECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH-----
Confidence 99999 999999999999998 44555555543 33 34678899999999999999999999999999988
Q ss_pred ccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 297 SKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 297 ~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.++.+++++++.|++.++||+|.+.+.|+.++.+... ..||.++|++++..
T Consensus 158 ------~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~-----------------------~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 158 ------LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPD-----------------------GKLTLPRVEQAVND 208 (343)
T ss_dssp ------TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTT-----------------------CEECHHHHHHHHHH
T ss_pred ------cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC-----------------------CCCCHHHHHHHHhh
Confidence 8899999999999999999999999999999887532 36999999999875
Q ss_pred ccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHhhc-------cc-cccccCChHhHHHHH
Q 008664 377 KHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLEGGEQPLYIARRLVRF-------AS-EDVGLADPLALNQAV 448 (558)
Q Consensus 377 ~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~~gedp~~I~rrl~~~-------a~-edigla~~~a~~~~~ 448 (558)
.. ....+ .+++++.++|.+.++.++.+++..|++|..|.+.|... .. .+.| ++.
T Consensus 209 ~~------~~~if----~l~~ai~~~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g--~~~------ 270 (343)
T 1jr3_D 209 AA------HFTPF----HWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHT--PLR------ 270 (343)
T ss_dssp HC------CCCHH----HHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSS--CHH------
T ss_pred hh------cCCHH----HHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCC--CHH------
Confidence 42 22334 55666777999999999999999999998876554322 22 1223 222
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhh
Q 008664 449 SCYQACHFLGMPECNVILAQCVAYLALAPKSISIYRALGAAQKVIRES 496 (558)
Q Consensus 449 ~~~~a~~~~G~pe~~~~l~~~~~~l~~~pks~~~~~a~~~a~~~~~~~ 496 (558)
++++.+|++.-+.........--..++=..++..+..+...++.+
T Consensus 271 ---~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~ 315 (343)
T 1jr3_D 271 ---ALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQD 315 (343)
T ss_dssp ---HHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 334455666656555444433333444455555556666666654
No 25
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=1.4e-22 Score=205.18 Aligned_cols=243 Identities=17% Similarity=0.202 Sum_probs=176.4
Q ss_pred cccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC----CCceEEEEecc--cccHHHHHHHHHHHHHh
Q 008664 138 GQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA----VSYKFVCLSAV--TSGVKDVRDAVEDARKL 211 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~----~~~~~i~l~~~--~~~~~~i~~~~~~~~~~ 211 (558)
||++++ +.|.+.++.++.+++||+||||+|||++|+++++.++ .+..++.+++. ..++++++++++.+...
T Consensus 1 g~~~~~---~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQL---ETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp ---CHH---HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC
T ss_pred ChHHHH---HHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc
Confidence 688887 9999999998888999999999999999999999742 13578888876 46888999999888654
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCCHHHHHHHHHHHH
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAV 289 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l 289 (558)
+ ..+++.|+||||+|+|+...++.|+++||+ ...+||++|+ ++ .++.++++|| ++.|++++.+++..+|.+.+
T Consensus 78 p-~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~-~~-~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 78 P-ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR-RW-HYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp C-SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES-CG-GGSCHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred c-ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC-Ch-HhChHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence 3 456789999999999999999999999999 4678888774 33 4899999999 99999999999999998765
Q ss_pred HhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHH
Q 008664 290 DDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDD 369 (558)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~ 369 (558)
.++++++ +.+.||+|.+++.++......... .... . ..-+.++
T Consensus 153 ----------------~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l--------~~~~-~--------~~~~~~~ 195 (305)
T 2gno_A 153 ----------------GDLWEEL----PLLERDFKTALEAYKLGAEKLSGL--------MESL-K--------VLETEKL 195 (305)
T ss_dssp ----------------TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHH--------HHHH-H--------HSCHHHH
T ss_pred ----------------CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHH--------HHHH-H--------hcccHHH
Confidence 1345554 457999999999986433211100 0000 0 0012333
Q ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCChHHHHHHHhhccc
Q 008664 370 AKEAFQCKHLAYDRAGEEHYNLISALHKSMRGNDADAAIYWLARMLE--GGEQPLYIARRLVRFAS 433 (558)
Q Consensus 370 v~~~l~~~~~~~d~~~~~~~d~isal~ks~rgsd~~aal~~l~~ll~--~gedp~~I~rrl~~~a~ 433 (558)
|..++......+ ...++++.++.+ .|.+.|+..+.+|+. .|++|..+..++.+...
T Consensus 196 v~~~~~~~~~~~----~~v~~l~~ai~~----~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~ 253 (305)
T 2gno_A 196 LKKVLSKGLEGY----LACRELLERFSK----VESKEFFALFDQVTNTITGKDAFLLIQRLTRIIL 253 (305)
T ss_dssp TTTTTCSHHHHH----HHHHHHHHHHHH----SCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCcch----HHHHHHHHHHHC----CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 333332211000 023455555555 899999999999998 89999888877776554
No 26
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.2e-21 Score=200.87 Aligned_cols=208 Identities=22% Similarity=0.272 Sum_probs=160.7
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+.....+|+||.|.++.+ ..|+.++.. ..+.++|||||||||||++|+++|++++ .+|+.++
T Consensus 140 ~~~p~v~~~dIgGl~~~k---~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f~~v~ 214 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQI---KEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKFIRVS 214 (405)
T ss_dssp ECSCSCCGGGSCSCHHHH---HHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred cCCCCCCHHHhCCHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCceEEE
Confidence 334456899999999998 777766653 2347899999999999999999999999 9999998
Q ss_pred cccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEE
Q 008664 193 AVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIV 247 (558)
Q Consensus 193 ~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~ii 247 (558)
++.. +...++.+|..++.. .++||||||||.+.. .....||..|+. ..++
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~-----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHT-----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHh-----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 8654 566789999988764 789999999998842 134567777764 4678
Q ss_pred EEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CH
Q 008664 248 FIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DA 323 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~ 323 (558)
+|++| |....++++|++ || ..|.|+.|+.++..+|++..+.+ ..+. ++-.++.|++.+.| ..
T Consensus 290 vIaAT--Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~l~-~dvdl~~lA~~t~G~SG 355 (405)
T 4b4t_J 290 IIMAT--NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-----------MNLT-RGINLRKVAEKMNGCSG 355 (405)
T ss_dssp EEEEE--SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-----------SBCC-SSCCHHHHHHHCCSCCH
T ss_pred EEecc--CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-----------CCCC-ccCCHHHHHHHCCCCCH
Confidence 88877 777799999998 88 58999999999999999877644 1211 12237889999877 67
Q ss_pred HHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 324 RVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 324 R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
..+.+++..|...+..+ + ...||.+|+..++.+.
T Consensus 356 ADi~~l~~eA~~~Air~-------------~-------~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALRE-------------R-------RIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHHHHHHHT-------------T-------CSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-------------C-------CCCcCHHHHHHHHHHH
Confidence 77778888877765431 2 4579999999988753
No 27
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=3e-21 Score=206.81 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=107.2
Q ss_pred eEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEecc---------CC--CCCCCCcHHhhcccceeeccCCCHHHHHHHH
Q 008664 219 TVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGAT---------TE--NPSFHLITPLLSRCRVLTLNPLKPHDVEILL 285 (558)
Q Consensus 219 ~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~at---------t~--n~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL 285 (558)
+|+||||+|+|+.+.++.|++.||+ .. ++|++| ++ +....++++++|||+.+.|+|++.+++..+|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 5999999999999999999999998 34 444444 21 1245889999999999999999999999999
Q ss_pred HHHHHhHhcccccccCCcccccChHHHHHHHHhC-CCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccc
Q 008664 286 KRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC-DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVAL 364 (558)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s-~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (558)
+..+.. +++.++++++..|++.+ .|++|.++++++.+...+..+ + ...
T Consensus 376 ~~~~~~-----------~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~-------------~-------~~~ 424 (456)
T 2c9o_A 376 KIRAQT-----------EGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN-------------G-------KDS 424 (456)
T ss_dssp HHHHHH-----------HTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHT-------------T-------CSS
T ss_pred HHHHHH-----------hCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhc-------------C-------CCc
Confidence 999876 67789999999999998 999999999999997776531 2 457
Q ss_pred cCHHHHHHHHhh
Q 008664 365 VTLDDAKEAFQC 376 (558)
Q Consensus 365 It~e~v~~~l~~ 376 (558)
||.++|++++..
T Consensus 425 v~~~~v~~~~~~ 436 (456)
T 2c9o_A 425 IEKEHVEEISEL 436 (456)
T ss_dssp BCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999999874
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=3.6e-21 Score=202.13 Aligned_cols=225 Identities=23% Similarity=0.335 Sum_probs=166.0
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEE
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFV 189 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i 189 (558)
..|.++++|.+|++++|++..+ ..+..++.. ....++||+||||||||++|++||+.++ .+|+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~~~ 177 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAK---QALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--ATFF 177 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHH---HHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEE
T ss_pred hhhhccCCCCChHHhCCHHHHH---HHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--CcEE
Confidence 4688899999999999999987 777777632 2247899999999999999999999998 8999
Q ss_pred EEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC-----------CHHHHHHHHhhHhc------Cc
Q 008664 190 CLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF-----------NKSQQDSFLPVIED------GS 245 (558)
Q Consensus 190 ~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l-----------~~~~~~~Ll~~le~------~~ 245 (558)
.+++... ....++.++..+.. ..++||||||||.+ ....++.|+..++. ..
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARE-----LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHH-----SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 9998764 23345556665543 26789999999988 34456778887763 45
Q ss_pred EEEEeccCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHH
Q 008664 246 IVFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDAR 324 (558)
Q Consensus 246 iilI~att~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R 324 (558)
+++|++| |....+++++++||. ++.|+.++.++...++...+.. .+..++++++..|++.+.|..+
T Consensus 253 v~vI~at--n~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~-----------~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 253 VLVMGAT--NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK-----------QGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp EEEEEEE--SCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT-----------SCCCSCHHHHHHHHHHTTTCCH
T ss_pred EEEEEec--CCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHcCCCCH
Confidence 7888877 566689999999995 7999999999999999988866 6778899999999999999777
Q ss_pred HHHH-HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 325 VALN-ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 325 ~~~~-~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
..++ +++.+...+..+.......... ......|+.+++..++...
T Consensus 320 ~~l~~L~~~a~~~~~rel~~~~~~~~~--------~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 320 SDLTALAKDAALGPIRELKPEQVKNMS--------ASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHHHHHHHTTHHHHTSCCC---CCS--------SSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccc--------hhhcCCcCHHHHHHHHHHc
Confidence 5554 4444433322110000000000 0113469999999888764
No 29
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.4e-21 Score=197.40 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=158.9
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
++-...+|+||.|.++.+ ..|+..+.. ..+.++|||||||||||++|+++|.+++ .+|+.++
T Consensus 174 ~~~p~v~~~DIgGld~~k---~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~ 248 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQI---QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATFLRIV 248 (437)
T ss_dssp ESSCCCCGGGTCSCHHHH---HHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEE
T ss_pred ccCCCCcceecCcHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCEEEEE
Confidence 344456899999999998 777766643 2247899999999999999999999999 9999998
Q ss_pred cccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEE
Q 008664 193 AVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIV 247 (558)
Q Consensus 193 ~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~ii 247 (558)
++.. +...++.+|..++.. .++||||||+|.+.. .....||..++. +.++
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~-----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGEN-----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHT-----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhc-----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 7654 456788888888664 789999999998732 234456666653 5678
Q ss_pred EEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCC-C
Q 008664 248 FIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDG-D 322 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~G-d 322 (558)
+|+|| |....++++|++ || ..|.|+.|+.++..+|++..+.+ ..++++ .++.|++.+.| .
T Consensus 324 VIaAT--Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-------------~~l~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 324 VIMAT--NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-------------MNLSEDVNLETLVTTKDDLS 388 (437)
T ss_dssp EEEEE--SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-------------SCBCSCCCHHHHHHHCCSCC
T ss_pred EEEeC--CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-------------CCCCCcCCHHHHHHhCCCCC
Confidence 88887 777799999998 77 47999999999999999887754 222222 37889998776 6
Q ss_pred HHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 323 ARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 323 ~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
...+.+++..|...+..+ + ...||.+|+.+++.+.
T Consensus 389 GADI~~l~~eA~~~Air~-------------~-------~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALRE-------------R-------RMQVTAEDFKQAKERV 423 (437)
T ss_dssp HHHHHHHHHHHHHHHHHT-------------T-------CSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------------C-------CCccCHHHHHHHHHHH
Confidence 677777888877665431 2 4579999999988754
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=5.4e-21 Score=195.57 Aligned_cols=193 Identities=22% Similarity=0.323 Sum_probs=152.1
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEE
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFV 189 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i 189 (558)
..+...+.+.+|++++|++..+ ..+..++.. ....++||+||||||||++|+++|+.++ ..|+
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~ 80 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAK---EALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFF 80 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHH---HHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEEE
T ss_pred cceeecCCCCCHHHhcChHHHH---HHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCEE
Confidence 3466778888999999999998 788777731 1136899999999999999999999998 8999
Q ss_pred EEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc-----CcE
Q 008664 190 CLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED-----GSI 246 (558)
Q Consensus 190 ~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~-----~~i 246 (558)
.+++... ....++.++..+... .++||||||||.+.. ..++.|+..++. ..+
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMAREN-----KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHHHT-----SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHHhc-----CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 9987542 234466666666443 678999999998853 346778777753 557
Q ss_pred EEEeccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHH
Q 008664 247 VFIGATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DAR 324 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R 324 (558)
++|++| |....+++++++|| ..+.++.++.++...+++..+.. ....+++..++.|++.+.| +.+
T Consensus 156 ~vi~at--n~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~-----------~~~~~~~~~l~~la~~t~g~sg~ 222 (322)
T 3eie_A 156 LVLGAT--NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD-----------TPCVLTKEDYRTLGAMTEGYSGS 222 (322)
T ss_dssp EEEEEE--SCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT-----------CCCCCCHHHHHHHHHTTTTCCHH
T ss_pred EEEEec--CChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc-----------CCCCCCHHHHHHHHHHcCCCCHH
Confidence 788777 66668999999999 57889999999999999988765 5667889999999999887 677
Q ss_pred HHHHHHHHHHHHh
Q 008664 325 VALNALEISAITA 337 (558)
Q Consensus 325 ~~~~~Le~a~~~a 337 (558)
.+.++++.+...+
T Consensus 223 di~~l~~~a~~~a 235 (322)
T 3eie_A 223 DIAVVVKDALMQP 235 (322)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665443
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=6.5e-21 Score=192.42 Aligned_cols=224 Identities=25% Similarity=0.341 Sum_probs=162.0
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
|..++++.+|++++|++..+ ..+..++.. ....+++|+||||||||++|+++++.++ ..++.+
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~~~~i 85 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAK---QALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--ATFLNI 85 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHH---HHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CEEEEE
T ss_pred hccCCCCCCHHHhCChHHHH---HHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEe
Confidence 56677889999999999987 777777643 2347899999999999999999999998 889999
Q ss_pred ecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-------CcE
Q 008664 192 SAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-------GSI 246 (558)
Q Consensus 192 ~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-------~~i 246 (558)
++... +...++.++..+.. ..+++|||||+|.+. ...++.|+..++. ..+
T Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 86 SAASLTSKYVGDGEKLVRALFAVARH-----MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ESTTTSSSSCSCHHHHHHHHHHHHHH-----TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred eHHHHhhcccchHHHHHHHHHHHHHH-----cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 88653 23445556655543 367999999999873 3456677777765 246
Q ss_pred EEEeccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHH-
Q 008664 247 VFIGATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDAR- 324 (558)
Q Consensus 247 ilI~att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R- 324 (558)
++|++| |....+++++++|| ..+.++.++.++...+++..+.. .+..+++++++.|++.+.|..+
T Consensus 161 ~vi~~t--n~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~-----------~~~~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 161 VVLAAT--NRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK-----------QGSPLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp EEEEEE--SCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG-----------GSCCSCHHHHHHHHHHTTTCCHH
T ss_pred EEEeec--CChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh-----------cCCCCCHHHHHHHHHHcCCCCHH
Confidence 677766 44457899999999 58889999999999999988765 5567889999999999999776
Q ss_pred HHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 325 VALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 325 ~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
.+.++++.+...+..+........... .....||.+|+..++....
T Consensus 228 ~l~~l~~~a~~~a~r~~~~~~~~~~~~--------~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 228 DLTALAKDAALEPIRELNVEQVKCLDI--------SAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHHHTTHHHHTCC--------C--------CCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccc--------cccCCcCHHHHHHHHHHcC
Confidence 444666666544332100000000000 0124699999999988654
No 32
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.8e-21 Score=200.62 Aligned_cols=209 Identities=23% Similarity=0.264 Sum_probs=160.1
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+.-.+.+|+||.|.++.+ ..|+..+.. ..++++|||||||||||++|+++|.+++ .+|+.++
T Consensus 173 ~~~p~~t~~digGl~~~k---~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f~~v~ 247 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQI---EELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATFLKLA 247 (434)
T ss_dssp ESSCSCCGGGSCSCHHHH---HHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred CCCCCCChHhcCcHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 344556899999999987 777665432 2347999999999999999999999999 9999998
Q ss_pred cccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEE
Q 008664 193 AVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIV 247 (558)
Q Consensus 193 ~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~ii 247 (558)
++.. +...++.+|..++.. .++||||||+|.+.. .....||..|+. ..++
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~-----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEK-----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHH-----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhc-----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 8654 456788888888765 789999999997621 124567777765 4578
Q ss_pred EEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCC-C
Q 008664 248 FIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDG-D 322 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~G-d 322 (558)
+|++| |....++++|++ || ..|.|+.|+.++...|++..+.+ .. ++++ .++.|++.+.| +
T Consensus 323 VIaaT--Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~--~~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 323 VLAAT--NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK-----------MT--TDDDINWQELARSTDEFN 387 (434)
T ss_dssp EEEEC--SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH-----------SC--BCSCCCHHHHHHHCSSCC
T ss_pred EEEeC--CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC-----------CC--CCCcCCHHHHHHhCCCCC
Confidence 88877 777799999988 77 58999999999999999988765 11 1221 27888998877 6
Q ss_pred HHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccc
Q 008664 323 ARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHL 379 (558)
Q Consensus 323 ~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~ 379 (558)
.+.+.+++..|...+..+ + ...||.+|+.+++.+...
T Consensus 388 GADi~~l~~eA~~~a~r~-------------~-------~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIALRN-------------G-------QSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------T-------CSSBCHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHc-------------C-------CCCcCHHHHHHHHHHHhC
Confidence 777778888777665331 2 357999999999987543
No 33
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=1.2e-20 Score=195.63 Aligned_cols=192 Identities=22% Similarity=0.332 Sum_probs=149.2
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
+..++++.+|++|+|++..+ ..+..++.. ....++||+||||||||++|+++|+.++ .+++.+
T Consensus 41 ~~~~~~~~~~~di~G~~~~~---~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~v 115 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAK---EALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSV 115 (355)
T ss_dssp ------CCCGGGSCCGGGHH---HHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEE
T ss_pred hcccCCCCCHHHhCCHHHHH---HHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEe
Confidence 45567788999999999987 788777632 1236799999999999999999999998 889998
Q ss_pred ecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc-----CcEEE
Q 008664 192 SAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED-----GSIVF 248 (558)
Q Consensus 192 ~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~-----~~iil 248 (558)
++... ....++.++..+.. ..++||||||||.+.. ..++.|+..|+. ..+++
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHH-----TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 87532 34456666666543 3679999999999863 346778888863 56778
Q ss_pred EeccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHH
Q 008664 249 IGATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVA 326 (558)
Q Consensus 249 I~att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~ 326 (558)
|++| |....+++++++|| ..+.+++++.++...+++..+.. ....+++..++.|++.+.| ..+.+
T Consensus 191 I~at--n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~-----------~~~~~~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 191 LGAT--NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD-----------TPSVLTKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp EEEE--SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT-----------SCBCCCHHHHHHHHHHTTTCCHHHH
T ss_pred Eeec--CCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh-----------CCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 8877 55668999999999 68899999999999999988765 5556789999999999988 77888
Q ss_pred HHHHHHHHHHhc
Q 008664 327 LNALEISAITAA 338 (558)
Q Consensus 327 ~~~Le~a~~~a~ 338 (558)
.++++.++..+.
T Consensus 258 ~~l~~~A~~~a~ 269 (355)
T 2qp9_X 258 AVVVKDALMQPI 269 (355)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776643
No 34
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-20 Score=197.62 Aligned_cols=204 Identities=23% Similarity=0.281 Sum_probs=157.0
Q ss_pred CCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
..+|+||.|.++.+ ..|+..+.. ..++++|||||||||||++|+++|++++ .+|+.++++..
T Consensus 205 ~vt~~DIgGl~~~k---~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L 279 (467)
T 4b4t_H 205 DVTYSDVGGCKDQI---EKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSEL 279 (467)
T ss_dssp SCCCSSCTTCHHHH---HHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGG
T ss_pred CCCHHHhccHHHHH---HHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHh
Confidence 35899999999987 777766532 2358999999999999999999999999 99999987654
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEEEEec
Q 008664 197 -------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~iilI~a 251 (558)
+...++.+|..++.. .++||||||+|.+.. .....||..|+. +.+++|++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~-----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA 354 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTK-----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHT-----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred hcccCCHHHHHHHHHHHHHHhc-----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 456788888888664 789999999998732 134456666654 56888888
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh-HHHHHHHHhCCC-CHHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH-DAIEFLCSNCDG-DARVA 326 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~-~al~~La~~s~G-d~R~~ 326 (558)
| |....++++|++ || ..|.|+.|+.++..+|++..+.. . .++. -.++.|++.+.| ....+
T Consensus 355 T--Nrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-----------~--~l~~dvdl~~LA~~T~GfSGADI 419 (467)
T 4b4t_H 355 T--NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-----------M--SVERGIRWELISRLCPNSTGAEL 419 (467)
T ss_dssp C--SCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-----------S--CBCSSCCHHHHHHHCCSCCHHHH
T ss_pred C--CCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-----------C--CCCCCCCHHHHHHHCCCCCHHHH
Confidence 7 677799999998 88 58999999999999999887754 1 1221 236788988877 66777
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
.+++..|...+..+ + ...||.+|+.+++.+..
T Consensus 420 ~~l~~eAa~~Air~-------------~-------~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 420 RSVCTEAGMFAIRA-------------R-------RKVATEKDFLKAVDKVI 451 (467)
T ss_dssp HHHHHHHHHHHHHH-------------T-------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------------C-------CCccCHHHHHHHHHHHh
Confidence 77777776665331 2 35799999999887643
No 35
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.86 E-value=9.9e-21 Score=197.20 Aligned_cols=293 Identities=15% Similarity=0.184 Sum_probs=195.5
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHc----CCCCeEEEEcCCCchHHHHHHHHHHHhCC----CceEEEEec
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS----NRLPSIIFWGPPGTGKTTLAKAIVNSVAV----SYKFVCLSA 193 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~----~~~~~~LL~GppGtGKTtLa~~la~~l~~----~~~~i~l~~ 193 (558)
.+|...+.| ++++|++..+ ..+..++.. ....+++|+||||||||++++.+++.+.. ...++.+++
T Consensus 11 ~~l~~~~~p---~~~~gr~~e~---~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 11 EYLLPDYIP---DELPHREDQI---RKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp GGGSSSCCC---SCCTTCHHHH---HHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred hhCCCccCC---CCCCChHHHH---HHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 345555666 6789999887 788777763 44578999999999999999999998821 278888886
Q ss_pred ccccH--H------------------HHHHHHHHHHHhhhhcCCceEEEEeCCccCC----HHHHHHHHhhHh---cCcE
Q 008664 194 VTSGV--K------------------DVRDAVEDARKLRVKSNKRTVLFVDEVHRFN----KSQQDSFLPVIE---DGSI 246 (558)
Q Consensus 194 ~~~~~--~------------------~i~~~~~~~~~~~~~~~~~~il~IDEid~l~----~~~~~~Ll~~le---~~~i 246 (558)
..... . ....++..........+.+.+|||||+|.+. ......|+..++ ...+
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~ 164 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKI 164 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--E
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeE
Confidence 42210 0 0122222222222223457899999999885 345667777774 4578
Q ss_pred EEEeccCCCCC-CCCcHHhhccc--ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCC---
Q 008664 247 VFIGATTENPS-FHLITPLLSRC--RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCD--- 320 (558)
Q Consensus 247 ilI~att~n~~-~~l~~aL~sR~--~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~--- 320 (558)
.+|++|+..+. ..+.+.+.+|| +.+.|+|++.+++..++...+.. +.....+++++++.+++.+.
T Consensus 165 ~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 165 SFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM---------AFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp EEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH---------HBCSSCSCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh---------hccCCCCCHHHHHHHHHHHHHhc
Confidence 88887764432 45778899999 68999999999999999988764 11346789999999999987
Q ss_pred CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccCCCcchHHHHHHHHHHhc
Q 008664 321 GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDRAGEEHYNLISALHKSMR 400 (558)
Q Consensus 321 Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~~~~~~~d~isal~ks~r 400 (558)
||+|.++++++.+...+..+ + ...||.+++++++.... . +.+.+.++
T Consensus 236 G~~r~~~~ll~~a~~~a~~~-------------~-------~~~i~~~~v~~a~~~~~----------~---~~~~~~~~ 282 (386)
T 2qby_A 236 GDARRALDLLRVSGEIAERM-------------K-------DTKVKEEYVYMAKEEIE----------R---DRVRDIIL 282 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHT-------------T-------CSSCCHHHHHHHHHHHH----------H---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhc-------------C-------CCccCHHHHHHHHHHHh----------h---chHHHHHH
Confidence 99999999999988776431 2 34799999999987531 1 24566666
Q ss_pred CCCHHHHHHH--HHHHHhCCCCh---HHHHHHHhhccccccccCChHhHHHHHHHHHHHHHhCCchhhH
Q 008664 401 GNDADAAIYW--LARMLEGGEQP---LYIARRLVRFASEDVGLADPLALNQAVSCYQACHFLGMPECNV 464 (558)
Q Consensus 401 gsd~~aal~~--l~~ll~~gedp---~~I~rrl~~~a~edigla~~~a~~~~~~~~~a~~~~G~pe~~~ 464 (558)
+.++....++ ++.+.+.|+++ ..|.++.. ..++++| .+|........+.+.....|+.|++.
T Consensus 283 ~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~-~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 283 TLPFHSKLVLMAVVSISSEENVVSTTGAVYETYL-NICKKLG-VEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp TSCHHHHHHHHHHHHHC-----CEEHHHHHHHHH-HHHHHHT-CCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHH-HHHHhcC-CCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 6665544333 33334456665 34444433 3345666 45544445555666667788887753
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.86 E-value=5.5e-21 Score=185.92 Aligned_cols=212 Identities=16% Similarity=0.241 Sum_probs=160.0
Q ss_pred CCCchhhcCC-CCCCcccccc---ccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccc
Q 008664 121 HAPLSERMRP-VNINDVVGQD---HLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVT 195 (558)
Q Consensus 121 ~~~l~~~~rp-~~~~dviGq~---~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~ 195 (558)
..+|..+++| .+|++++|.. ..+ ..+..++......+++|+||||||||++++.+++.+. ....++.+++..
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELI---GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHH---HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4578888988 7999999832 333 6777777766678999999999999999999999875 225566666644
Q ss_pred ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH--HHHHHhhHhc----CcEEEEeccCCCCC--CCCcHHhhcc
Q 008664 196 SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ--QDSFLPVIED----GSIVFIGATTENPS--FHLITPLLSR 267 (558)
Q Consensus 196 ~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~--~~~Ll~~le~----~~iilI~att~n~~--~~l~~aL~sR 267 (558)
.... +...+ .....+.+|||||+|.+.... ++.|+.+++. +.+.+|++++.++. ..+.+++.+|
T Consensus 91 ~~~~-~~~~~-------~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r 162 (242)
T 3bos_A 91 HASI-STALL-------EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSR 162 (242)
T ss_dssp GGGS-CGGGG-------TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHH
T ss_pred HHHH-HHHHH-------HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhH
Confidence 3211 11111 112356899999999997655 7888887654 54434444543332 2345899999
Q ss_pred c---ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCcc
Q 008664 268 C---RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISAITAAVRVPVK 344 (558)
Q Consensus 268 ~---~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~~~a~~~~~~~ 344 (558)
| .++.|++++.+++..++...+.. .++.+++++++.|++.++||+|.+.+.|+.++..+...
T Consensus 163 ~~~~~~i~l~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~---- 227 (242)
T 3bos_A 163 MHWGLTYQLQPMMDDEKLAALQRRAAM-----------RGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVH---- 227 (242)
T ss_dssp HHHSEEEECCCCCGGGHHHHHHHHHHH-----------TTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH----
T ss_pred hhcCceEEeCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh----
Confidence 9 89999999999999999999876 67789999999999999999999999999998887431
Q ss_pred chhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 345 EVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
...||.++++++++
T Consensus 228 -----------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 -----------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp -----------------TCCCCHHHHHHHHT
T ss_pred -----------------CCCCcHHHHHHHhh
Confidence 24699999999875
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.1e-20 Score=193.90 Aligned_cols=229 Identities=20% Similarity=0.303 Sum_probs=167.5
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
+.++++|.+|++|+|++..+ ..+..++.. ....++||+||||||||++|+++|+.++ ..++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAK---ATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--ATFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHH---HHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CEEEEE
T ss_pred cccCCCCCCHHHhCChHHHH---HHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--CeEEEE
Confidence 44567788999999999988 777777653 3357899999999999999999999998 899999
Q ss_pred ecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc------CcEE
Q 008664 192 SAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED------GSIV 247 (558)
Q Consensus 192 ~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~------~~ii 247 (558)
++... ....++.++..+.. ..++||||||||.+.. ..++.|+..++. ..++
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARC-----QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ehHHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 98654 23345555555433 3679999999998732 456778888764 4678
Q ss_pred EEeccCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHH
Q 008664 248 FIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARV 325 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~ 325 (558)
+|++| |....+++++++||. .+.++.++.++...++...+.. .+..++++.++.|++.+.| ..+.
T Consensus 224 vI~at--n~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~-----------~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 224 VVGAT--NRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSK-----------EQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp EEEEE--SCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT-----------SCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred EEEec--CChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh-----------cCCCccHHHHHHHHHHcCCCCHHH
Confidence 88877 556688999999996 7899999999999999988876 5677899999999999988 6667
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccC
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDR 383 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~ 383 (558)
+..+++.+...+..+........+.. .....|+.+++.+++.........
T Consensus 291 l~~l~~~a~~~~ir~l~~~~~~~~~~--------~~~~~i~~~d~~~al~~~~ps~~~ 340 (357)
T 3d8b_A 291 MTQLCREASLGPIRSLQTADIATITP--------DQVRPIAYIDFENAFRTVRPSVSP 340 (357)
T ss_dssp HHHHHHHHHTHHHHHCCC------------------CCCBCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccc--------cccCCcCHHHHHHHHHhcCCCCCH
Confidence 77777766544322100000000000 013579999999998876544443
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=2e-21 Score=196.75 Aligned_cols=223 Identities=19% Similarity=0.278 Sum_probs=156.7
Q ss_pred CccccccccCCchHHHHHHHHc--------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc--
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCS--------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG-- 197 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~--------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~-- 197 (558)
++++|+++.+ ..+..++.. ....+++|+||||||||++|+++++.++ .+++.+++....
T Consensus 15 ~~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~--~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAK---RAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHH---HHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGGSSC
T ss_pred hhcCChHHHH---HHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEcchhcccC
Confidence 3589999887 777777654 3457899999999999999999999998 788888876532
Q ss_pred -------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHH------------HHHHHhhHhcC------------cE
Q 008664 198 -------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQ------------QDSFLPVIEDG------------SI 246 (558)
Q Consensus 198 -------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~------------~~~Ll~~le~~------------~i 246 (558)
...++.++............++||||||+|.+.... ++.|++++++. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 169 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcE
Confidence 122444443221000011236899999999998654 89999999975 56
Q ss_pred EEEeccC--CCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHHH----HHHhHhcccccccCCcccccChHHHHHHHHhC
Q 008664 247 VFIGATT--ENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLKR----AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC 319 (558)
Q Consensus 247 ilI~att--~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~----~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s 319 (558)
++|++++ .+....++++|++||. ++.|++++.+++..+++. .+..+...+.. .+..+.++++++++|++.+
T Consensus 170 ~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 170 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT--EGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp EEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHH--TTCEEEECHHHHHHHHHHH
T ss_pred EEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHh--cCCeeccCHHHHHHHHHHh
Confidence 7777752 1233478899999995 699999999999999983 22221111100 1235679999999999986
Q ss_pred --------CCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 320 --------DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 320 --------~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.||+|.+.++++.++...... .....+ ....||.++++++++..
T Consensus 248 ~~~~~~~~~g~~R~l~~~l~~~~~~~~~~--------~~~~~~------~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 248 FRVNEKTENIGARRLHTVMERLMDKISFS--------ASDMNG------QTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHSCCCTTHHHHHHHHHHSHHHHHH--------GGGCTT------CEEEECHHHHHHHTCSS
T ss_pred hhhcccccccCcHHHHHHHHHHHHhhhcC--------CccccC------CEEEEeeHHHHHHHHhh
Confidence 799999999999987542210 000001 02359999999998854
No 39
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.8e-20 Score=196.94 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=158.0
Q ss_pred CCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
..+|+||.|.++.+ ..|+.++.. ..++++|||||||||||++|+++|++++ .+|+.++++..
T Consensus 177 ~v~~~digGl~~~k---~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQI---RELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHH---HHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGT
T ss_pred CCChhHhCChHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhh
Confidence 45899999999988 777776653 2247999999999999999999999999 99999988654
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEEEEec
Q 008664 197 -------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~iilI~a 251 (558)
+...++.+|..++.. .++||||||+|.+.. .....||..|+. +.+++|++
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~-----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A 326 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEH-----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA 326 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHS-----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred ccccchHHHHHHHHHHHHHHhc-----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence 456678888887654 789999999998732 234567777765 45788888
Q ss_pred cCCCCCCCCcHHhhcc--c-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHH
Q 008664 252 TTENPSFHLITPLLSR--C-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVAL 327 (558)
Q Consensus 252 tt~n~~~~l~~aL~sR--~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~ 327 (558)
| |....++++|+++ | ..|.|+.|+.++...|++..+.. .... ++..++.|++.+.| +...+.
T Consensus 327 T--Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~~~-~d~dl~~lA~~t~G~sGADi~ 392 (437)
T 4b4t_L 327 T--NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----------VKKT-GEFDFEAAVKMSDGFNGADIR 392 (437)
T ss_dssp E--SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----------SCBC-SCCCHHHHHHTCCSCCHHHHH
T ss_pred c--CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----------CCCC-cccCHHHHHHhCCCCCHHHHH
Confidence 7 6677999999986 5 47999999999999999988765 1111 12237889999877 677777
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
+++..|...+..+ + ...||.+|+.+++.+..
T Consensus 393 ~l~~eA~~~air~-------------~-------~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 393 NCATEAGFFAIRD-------------D-------RDHINPDDLMKAVRKVA 423 (437)
T ss_dssp HHHHHHHHHHHHT-------------T-------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-------------C-------CCCCCHHHHHHHHHHHH
Confidence 7887777665431 2 35799999999987643
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=2e-20 Score=184.99 Aligned_cols=213 Identities=25% Similarity=0.310 Sum_probs=159.1
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHHHc---------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS---------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~---------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.|.+++++.+|++++|+++.+.....+..++.. ....+++|+||||||||++|+++++.++ .+++.+++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~i~~ 78 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISG 78 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEECS
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCEEEEeH
Confidence 367788899999999999887332333333332 1246899999999999999999999998 78888887
Q ss_pred ccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEEE
Q 008664 194 VTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIVF 248 (558)
Q Consensus 194 ~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~iil 248 (558)
... +...++.++..+.. ..++++||||+|.+.. ..++.++..++. ..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 153 (257)
T 1lv7_A 79 SDFVEMFVGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 153 (257)
T ss_dssp CSSTTSCCCCCHHHHHHHHHHHHT-----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH-----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE
Confidence 543 34566777776643 3578999999987642 345567776663 45777
Q ss_pred EeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh-HHHHHHHHhCCC-CH
Q 008664 249 IGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH-DAIEFLCSNCDG-DA 323 (558)
Q Consensus 249 I~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~-~al~~La~~s~G-d~ 323 (558)
|++| |....+++++++ || ..+.+++|+.++...+++..+.. ..+.+ ..+..++..|.| +.
T Consensus 154 I~~t--n~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~-------------~~l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 154 IAAT--NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR-------------VPLAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp EEEE--SCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-------------SCBCTTCCHHHHHHTCTTCCH
T ss_pred EEee--CCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc-------------CCCCccccHHHHHHHcCCCCH
Confidence 7777 445678999988 77 57889999999999998877643 12322 336788999999 99
Q ss_pred HHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 324 RVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 324 R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
|.+.++++.+...+..+ + ...||.+++++++...
T Consensus 219 ~dl~~l~~~a~~~a~~~-------------~-------~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 219 ADLANLVNEAALFAARG-------------N-------KRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHHHHHHT-------------T-------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-------------C-------CCcccHHHHHHHHHHH
Confidence 99999999998877542 2 3579999999998764
No 41
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.85 E-value=1.5e-20 Score=193.28 Aligned_cols=169 Identities=22% Similarity=0.298 Sum_probs=141.7
Q ss_pred HHHHHHHHcCCCC-eEEEEcCCCchHHHHHHHHHHHhCCC----------------------ceEEEEecc----cccHH
Q 008664 147 SLLRSAVCSNRLP-SIIFWGPPGTGKTTLAKAIVNSVAVS----------------------YKFVCLSAV----TSGVK 199 (558)
Q Consensus 147 ~~l~~~i~~~~~~-~~LL~GppGtGKTtLa~~la~~l~~~----------------------~~~i~l~~~----~~~~~ 199 (558)
+.+...++.++.+ .+||+||||+|||++|+.+|+.+.+. ..++.+++. ..+.+
T Consensus 12 ~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~ 91 (334)
T 1a5t_A 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVD 91 (334)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHH
T ss_pred HHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHH
Confidence 7888888888875 59999999999999999999998642 346677653 45788
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhcccceeeccCCC
Q 008664 200 DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRCRVLTLNPLK 277 (558)
Q Consensus 200 ~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~~~i~~~~l~ 277 (558)
+++++++.+...+ ..+++.|+||||+|.|+.+.++.|++++|+ ..+++|++|+ ...++.++++|||+++.|++++
T Consensus 92 ~ir~l~~~~~~~~-~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~--~~~~l~~ti~SRc~~~~~~~~~ 168 (334)
T 1a5t_A 92 AVREVTEKLNEHA-RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR--EPERLLATLRSRCRLHYLAPPP 168 (334)
T ss_dssp HHHHHHHHTTSCC-TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES--CGGGSCHHHHTTSEEEECCCCC
T ss_pred HHHHHHHHHhhcc-ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC--ChHhCcHHHhhcceeeeCCCCC
Confidence 8998887765432 346789999999999999999999999998 4577777774 2357999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008664 278 PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEISA 334 (558)
Q Consensus 278 ~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a~ 334 (558)
.+++..+|...+ .+++++++.+++.++||+|.+++.++...
T Consensus 169 ~~~~~~~L~~~~----------------~~~~~~~~~l~~~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 169 EQYAVTWLSREV----------------TMSQDALLAALRLSAGSPGAALALFQGDN 209 (334)
T ss_dssp HHHHHHHHHHHC----------------CCCHHHHHHHHHHTTTCHHHHHHTTSSHH
T ss_pred HHHHHHHHHHhc----------------CCCHHHHHHHHHHcCCCHHHHHHHhccch
Confidence 999999887642 46889999999999999999999998765
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=6e-20 Score=187.75 Aligned_cols=188 Identities=24% Similarity=0.357 Sum_probs=148.5
Q ss_pred hcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHh-CCCceEEEEec
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVCLSA 193 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~l~~ 193 (558)
...+.+|+||+|+++.+ +.+..++.. ...+++||+||||||||++|+++|+.+ + ..|+.+++
T Consensus 5 ~~~~~~~~di~G~~~~k---~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--~~~~~i~~ 79 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAK---EALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISS 79 (322)
T ss_dssp ECCCCCGGGSCSCHHHH---HHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS--CEEEEEEC
T ss_pred cCCCCCHHHhcCHHHHH---HHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC--CcEEEEEh
Confidence 34566899999999987 777777642 123689999999999999999999998 6 78888887
Q ss_pred ccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-----CcEEEEe
Q 008664 194 VTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-----GSIVFIG 250 (558)
Q Consensus 194 ~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-----~~iilI~ 250 (558)
... ....++.++..+... .++||||||||.+. ....+.|+..++. ..+++|+
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~~-----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLAREN-----KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHHT-----SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhc-----CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 543 455677777766543 68999999999882 2345677777764 5688888
Q ss_pred ccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCC-HHHHHH
Q 008664 251 ATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGD-ARVALN 328 (558)
Q Consensus 251 att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd-~R~~~~ 328 (558)
+| |....+++++++|| ..+.++.++.++...+++..+.. ....+++..++.|++.+.|. .+.+.+
T Consensus 155 at--n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~-----------~~~~l~~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 155 AT--NIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT-----------TQNSLTEADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp EE--SCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT-----------CCBCCCHHHHHHHHHTCTTCCHHHHHH
T ss_pred ec--CCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc-----------CCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 77 56678999999999 58899999999999999988765 55667899999999998884 777777
Q ss_pred HHHHHHHHh
Q 008664 329 ALEISAITA 337 (558)
Q Consensus 329 ~Le~a~~~a 337 (558)
+++.++..+
T Consensus 222 l~~~A~~~a 230 (322)
T 1xwi_A 222 IVRDALMQP 230 (322)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 43
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.84 E-value=6.3e-21 Score=204.74 Aligned_cols=202 Identities=17% Similarity=0.263 Sum_probs=155.5
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEE
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFV 189 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i 189 (558)
.....+|+++++|..+++++|++..+ ..+..++.+...+++||+||||||||++|+++|+.+. ....++
T Consensus 164 ~~~~~~l~~~~r~~~ld~iiGr~~~i---~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 164 DSLARDLTAIAKEDSLDPVIGRSKEI---QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHH---HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHHHHHHHHHHhcCCCCCccCcHHHH---HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 34567899999999999999999998 8899999888889999999999999999999999972 136777
Q ss_pred EEecccc----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCC---CCCcH
Q 008664 190 CLSAVTS----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPS---FHLIT 262 (558)
Q Consensus 190 ~l~~~~~----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~---~~l~~ 262 (558)
.+++... ....++.++..+.. ..+.||||| ...+.++.|++.++.+.+++|++||.+.+ ..+++
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~-----~~~~iLfiD----~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQ-----AGNIILFID----AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp CC----------CTTHHHHHHHHHT-----CCCCEEEEC----C--------CCCTTSSSCEEEEECCTTTTHHHHTTCS
T ss_pred EeeCCccccchHHHHHHHHHHHHHh-----cCCeEEEEe----CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCH
Confidence 7776521 11345666666543 367899999 55678889999999999999999987663 46889
Q ss_pred HhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHHHHHHHHHHHHHH
Q 008664 263 PLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DARVALNALEISAIT 336 (558)
Q Consensus 263 aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R~~~~~Le~a~~~ 336 (558)
+|.+||.++.|.+|+.+++..+|+.++..+... .++.++++++..++.++.+ -++.++++|+.++..
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~-------~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAH-------HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGG-------SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 999999999999999999999999877653332 6788999999999987433 367899999988865
Q ss_pred hc
Q 008664 337 AA 338 (558)
Q Consensus 337 a~ 338 (558)
..
T Consensus 385 ~~ 386 (468)
T 3pxg_A 385 VR 386 (468)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 44
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.6e-20 Score=192.45 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=155.4
Q ss_pred CCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
...+|+||.|.++.+ ..+...+.. ..++++|||||||||||++|+++|++++ .+|+.++++.
T Consensus 167 p~v~~~digGl~~~k---~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~ 241 (428)
T 4b4t_K 167 PDVTYADVGGLDMQK---QEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSE 241 (428)
T ss_dssp CSCCGGGSCSCHHHH---HHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGG
T ss_pred CCCCHHHhccHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEecch
Confidence 345899999999987 777666643 2347899999999999999999999999 9999998865
Q ss_pred c-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC--------------HHHHHHHHhhHhc----CcEEEEe
Q 008664 196 S-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN--------------KSQQDSFLPVIED----GSIVFIG 250 (558)
Q Consensus 196 ~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~--------------~~~~~~Ll~~le~----~~iilI~ 250 (558)
. +...++.+|..++.. .++||||||+|.+. ......||..|+. ..+++|+
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~-----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLAREN-----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHT-----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred hhccccchhHHHHHHHHHHHHHc-----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 3 456788899888664 78999999999652 1235677777764 4578888
Q ss_pred ccCCCCCCCCcHHhhc--cc-ceeecc-CCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHH
Q 008664 251 ATTENPSFHLITPLLS--RC-RVLTLN-PLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARV 325 (558)
Q Consensus 251 att~n~~~~l~~aL~s--R~-~~i~~~-~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~ 325 (558)
+| |....++++|++ || ..|.|+ .++.++...|++..+.+ ..+. ++..++.|++.+.| +.+.
T Consensus 317 aT--N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-----------~~l~-~~~dl~~lA~~t~G~sgad 382 (428)
T 4b4t_K 317 AT--NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-----------MSLA-PEADLDSLIIRNDSLSGAV 382 (428)
T ss_dssp EE--SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-----------SCBC-TTCCHHHHHHHTTTCCHHH
T ss_pred ec--CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-----------CCCC-cccCHHHHHHHCCCCCHHH
Confidence 77 667799999998 77 478896 67888899999887755 2211 12237889988776 6777
Q ss_pred HHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 326 ALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 326 ~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
+.+++..|...+..+ + ...|+.+|+.+++.+
T Consensus 383 i~~l~~eA~~~a~r~-------------~-------~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRK-------------N-------RYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHT-------------T-------CSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-------------C-------CCCCCHHHHHHHHHH
Confidence 778888877665431 2 457999999998865
No 45
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-20 Score=189.67 Aligned_cols=228 Identities=8% Similarity=0.081 Sum_probs=153.4
Q ss_pred cccccccCCch-HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEecccccHH--HHHHH
Q 008664 136 VVGQDHLLSPN-SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLSAVTSGVK--DVRDA 204 (558)
Q Consensus 136 viGq~~~i~~~-~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~~~~~~~~--~i~~~ 204 (558)
+.|++..+... ..|...+..+..++++|+||||||||++++.+++++. ..+.++.+||...... -+..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 56776666211 2445556667889999999999999999999999984 1367899998653211 11111
Q ss_pred H-----------------HHHHHh-hhhcCCceEEEEeCCccCCHHHHHHHHhhHh-----cCcEEEEecc--CCCCCCC
Q 008664 205 V-----------------EDARKL-RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIE-----DGSIVFIGAT--TENPSFH 259 (558)
Q Consensus 205 ~-----------------~~~~~~-~~~~~~~~il~IDEid~l~~~~~~~Ll~~le-----~~~iilI~at--t~n~~~~ 259 (558)
+ ...... ........||||||+|.+. .|+.|+.+++ .+++++|+++ ++++.+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 1 111110 0123467899999999998 7788887774 3566666554 4445445
Q ss_pred CcHHhhccc--ceeeccCCCHHHHHHHHHHHHHhHhcccc----c--------------------ccCCcccccChHHHH
Q 008664 260 LITPLLSRC--RVLTLNPLKPHDVEILLKRAVDDVNNGLS----K--------------------SVGGTRVEVNHDAIE 313 (558)
Q Consensus 260 l~~aL~sR~--~~i~~~~l~~~~i~~iL~~~l~~~~~~~~----~--------------------~~~~~~~~i~~~al~ 313 (558)
+++++.||+ ++|.|+|++.+++..||++.+......+- . ..+...+.+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 677888998 57999999999999999999987543210 0 001123468999999
Q ss_pred HHHH---hCCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 314 FLCS---NCDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 314 ~La~---~s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.+++ ...||+|.++++|+.+...+..+. .......+| ...||.+.+.+++.+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~----~~k~~~~~~-------~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEISKKDF----VRKGGLQKG-------KLVVSQEMVPRYFSE 314 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH----HHHTTEETT-------EECCSEECCTHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHH----HhccCCCCC-------cEEeeHHHHHHHHHH
Confidence 9999 478999999999999998875410 000001123 567887777776653
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=1.3e-19 Score=181.78 Aligned_cols=205 Identities=23% Similarity=0.352 Sum_probs=153.3
Q ss_pred CCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
.+.+|++++|++..+ ..+..++.. ....++||+||||||||++|+++++.++ .+++.+++..
T Consensus 12 ~~~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~~ 86 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQM---QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGSE 86 (285)
T ss_dssp CCCCGGGSCSCHHHH---HHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGGG
T ss_pred CCCCHHHhcCHHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehHH
Confidence 345789999999987 777776644 3457899999999999999999999998 8898888755
Q ss_pred c-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC-----------CHHHHHHHHhhHhc-------CcEEEEe
Q 008664 196 S-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF-----------NKSQQDSFLPVIED-------GSIVFIG 250 (558)
Q Consensus 196 ~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l-----------~~~~~~~Ll~~le~-------~~iilI~ 250 (558)
. ....++.++..+.. ..++||||||+|.+ ....+..|+.+++. ..+++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 161 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKE-----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIG 161 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHH-----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEE
T ss_pred HHHhccchHHHHHHHHHHHHHH-----cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 3 23345555555533 36789999999987 44555666555532 4677888
Q ss_pred ccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHH
Q 008664 251 ATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVA 326 (558)
Q Consensus 251 att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~ 326 (558)
+| |....+++++++ || .++.|++++.++..++++..+.. ..+. .+..+..|+..+.| ..|.+
T Consensus 162 tt--n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~-----------~~~~-~~~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 162 AT--NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK-----------MNLA-EDVNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp EC--SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT-----------SCBC-TTCCHHHHHHHCTTCCHHHH
T ss_pred eC--CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc-----------CCCC-CcCCHHHHHHHcCCCCHHHH
Confidence 77 555688999999 88 48999999999999999887654 2222 23346788888777 77888
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.++++.+...+..+ + ...||.+++++++...
T Consensus 228 ~~l~~~a~~~a~~~-------------~-------~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 228 KAICTEAGMNAIRE-------------L-------RDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHT-------------T-------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------------c-------cCcCCHHHHHHHHHHH
Confidence 88888887766442 2 3579999999998754
No 47
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.83 E-value=1.1e-19 Score=184.33 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=148.1
Q ss_pred CccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHH-HH--
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAV-ED-- 207 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~-~~-- 207 (558)
++++|++..+ ..+...+.. ....++||+||||||||++|++|++... ...+|+.++|.......+...+ ..
T Consensus 2 ~~iig~s~~~---~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~ 78 (304)
T 1ojl_A 2 SHMIGSSPAM---QHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEK 78 (304)
T ss_dssp -CCCCCSHHH---HHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCS
T ss_pred CCcEECCHHH---HHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccc
Confidence 3588888887 666666554 3347899999999999999999999874 3478899998876543332211 00
Q ss_pred -----HHH---hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCCc
Q 008664 208 -----ARK---LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHLI 261 (558)
Q Consensus 208 -----~~~---~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l~ 261 (558)
+.. .......+++||||||+.++...|..|+.+++++. +.+|++|+.++. ..+.
T Consensus 79 g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr 158 (304)
T 1ojl_A 79 GAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFR 158 (304)
T ss_dssp SCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSC
T ss_pred cccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcH
Confidence 000 00001145799999999999999999999998754 778888866532 2467
Q ss_pred HHhhcccc--eeeccCCC--HHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Q 008664 262 TPLLSRCR--VLTLNPLK--PHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAIT 336 (558)
Q Consensus 262 ~aL~sR~~--~i~~~~l~--~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~ 336 (558)
+.|.+|+. .+.++|+. .+|+..++..++.++...+ +.....+++++++.|..+ |+||+|.+.++++.++..
T Consensus 159 ~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~----~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 159 QDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERN----RKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHT----TCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHh----ccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 88999984 46789998 5889999998887755443 334568999999999998 799999999999999987
Q ss_pred hcc
Q 008664 337 AAV 339 (558)
Q Consensus 337 a~~ 339 (558)
+..
T Consensus 235 ~~~ 237 (304)
T 1ojl_A 235 LTG 237 (304)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.82 E-value=6e-20 Score=182.34 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=143.0
Q ss_pred CCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHH-H
Q 008664 131 VNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAV-E 206 (558)
Q Consensus 131 ~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~-~ 206 (558)
.+|++++|++..+ ..+...+.. ....+++|+||||||||++|+++++.+.. ..+++.++|.......+...+ .
T Consensus 3 ~~f~~~ig~~~~~---~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g 79 (265)
T 2bjv_A 3 EYKDNLLGEANSF---LEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFG 79 (265)
T ss_dssp -------CCCHHH---HHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHC
T ss_pred cccccceeCCHHH---HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcC
Confidence 3688999998887 666555543 23478999999999999999999998753 367999999877554433221 1
Q ss_pred -------HHHH---hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC-------------cEEEEeccCCCCC-----C
Q 008664 207 -------DARK---LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG-------------SIVFIGATTENPS-----F 258 (558)
Q Consensus 207 -------~~~~---~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~-------------~iilI~att~n~~-----~ 258 (558)
.... .......+++|||||||.++.+.|+.|+.+++++ .+.+|++|+.++. .
T Consensus 80 ~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp CC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred CcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 0000 0001134679999999999999999999999864 3678888865432 2
Q ss_pred CCcHHhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcc-cccChHHHHHHHHh-CCCCHHHHHHHHHH
Q 008664 259 HLITPLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTR-VEVNHDAIEFLCSN-CDGDARVALNALEI 332 (558)
Q Consensus 259 ~l~~aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~-~~i~~~al~~La~~-s~Gd~R~~~~~Le~ 332 (558)
.+.++|.+|+. .+.++|++. +++..++..++.+..... +... ..+++++++.|..+ |+||+|++.++++.
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~----~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~ 235 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREI----KLPLFPGFTERARETLLNYRWPGNIRELKNVVER 235 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHT----TCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHh----CCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 46789999994 578899986 788888888776644433 1122 37899999999877 89999999999999
Q ss_pred HHHHhc
Q 008664 333 SAITAA 338 (558)
Q Consensus 333 a~~~a~ 338 (558)
++..+.
T Consensus 236 ~~~~~~ 241 (265)
T 2bjv_A 236 SVYRHG 241 (265)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 987764
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=3.8e-20 Score=187.70 Aligned_cols=181 Identities=20% Similarity=0.271 Sum_probs=142.2
Q ss_pred ccccccccCCchHHHHHHHH---------------cCCCCeEEEEcCCCchHHHHHHHHHHHhCC-----CceEEEEecc
Q 008664 135 DVVGQDHLLSPNSLLRSAVC---------------SNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-----SYKFVCLSAV 194 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~---------------~~~~~~~LL~GppGtGKTtLa~~la~~l~~-----~~~~i~l~~~ 194 (558)
+++|++..+ ..+..++. .....++||+||||||||++|+++++.+.. ..+++.+++.
T Consensus 32 ~i~G~~~~~---~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVK---DRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHH---HHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HccChHHHH---HHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 688998887 66665544 223368999999999999999999999841 2478888875
Q ss_pred cc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC---------CHHHHHHHHhhHhcC--cEEEEeccCCCC
Q 008664 195 TS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF---------NKSQQDSFLPVIEDG--SIVFIGATTENP 256 (558)
Q Consensus 195 ~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l---------~~~~~~~Ll~~le~~--~iilI~att~n~ 256 (558)
.. ....+..++..+ .++||||||+|.+ +...++.|+..++++ .+++|++++.+.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADR 180 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHH
T ss_pred HhhhhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHH
Confidence 43 122333444332 4579999999987 788899999999884 577777774321
Q ss_pred ---CCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh--------CCCCHH
Q 008664 257 ---SFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN--------CDGDAR 324 (558)
Q Consensus 257 ---~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~--------s~Gd~R 324 (558)
...++++|++|| .++.|++++.+++..+++..+.+ .++.+++++++.++++ |.||+|
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r 249 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD-----------QNYQMTPEAETALRAYIGLRRNQPHFANAR 249 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH-----------TTCEECHHHHHHHHHHHHHHTTSSSCCHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHHHHhccCCCCCcHH
Confidence 123468999999 89999999999999999999987 6788999999999884 779999
Q ss_pred HHHHHHHHHHHHh
Q 008664 325 VALNALEISAITA 337 (558)
Q Consensus 325 ~~~~~Le~a~~~a 337 (558)
.+.++++.++..+
T Consensus 250 ~l~~~l~~a~~~~ 262 (309)
T 3syl_A 250 SIRNALDRARLRQ 262 (309)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=177.09 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=143.4
Q ss_pred CCCCCccccccccCCchHHHHHHHH---c---------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVC---S---------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~---~---------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
+.+|++++|+++.+ ..+..++. . ....++||+||||||||++|+++|+.++ .+++.+++...
T Consensus 2 ~~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAK---LEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHH---HHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CCEEEEETTTTS
T ss_pred CCCHHHhCCHHHHH---HHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEechHHHH
Confidence 35789999999987 66655543 2 2346899999999999999999999998 88888888653
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH------------HHH---HHHHhhHhc----CcEEEEec
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK------------SQQ---DSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~------------~~~---~~Ll~~le~----~~iilI~a 251 (558)
+...++.++..+.. ..++||||||+|.+.. ..+ ..|+..++. ..+++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~ 151 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARA-----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAS 151 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHH-----TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred hhccChhHHHHHHHHHHHHh-----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEec
Confidence 23445666666543 2578999999999832 223 344444443 45777777
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCCC-HHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDGD-ARVA 326 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~Gd-~R~~ 326 (558)
| |....+++++++ || ..+.|++|+.++...+++..+.. .++..+.+ ....|++.+.|. .+.+
T Consensus 152 t--n~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~-----------~~~~~~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 152 T--NRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS-----------LKLTQSSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp E--SCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH-----------TTCCBTHHHHHHHHHHTCTTCCHHHH
T ss_pred C--CChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh-----------CCCCcchhhHHHHHHHHCCCCCHHHH
Confidence 6 555578889998 88 58899999999999999999877 44445544 357889888774 6688
Q ss_pred HHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 327 LNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 327 ~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.++++.++..+..+ + ...|+.+++++++.+.
T Consensus 219 ~~l~~~a~~~a~~~-------------~-------~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 219 ANICNEAALHAARE-------------G-------HTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHTC----------------------------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------------C-------CCCCCHHHHHHHHHHh
Confidence 88888887665431 2 3468888998888753
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.82 E-value=1.1e-20 Score=217.32 Aligned_cols=205 Identities=16% Similarity=0.247 Sum_probs=155.7
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i~l~ 192 (558)
..+|+++++|.+|++++|+++.+ ..+..++..+..++++|+||||||||++++.+|+.+. ....++.++
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i---~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEI---RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHH---HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred HHhHHHHHhcCCCcccCCcHHHH---HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 45789999999999999999988 8888888888888999999999999999999999982 137788877
Q ss_pred ccccc---------HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC--------HHHHHHHHhhHhcCcEEEEeccCCC
Q 008664 193 AVTSG---------VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN--------KSQQDSFLPVIEDGSIVFIGATTEN 255 (558)
Q Consensus 193 ~~~~~---------~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~--------~~~~~~Ll~~le~~~iilI~att~n 255 (558)
+.... ...++.++..+.. ...+.||||||+|.+. .+..+.|+++++.+.+.+|++|+.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~ 309 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQ----SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLD 309 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHT----TCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHH
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHh----cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCch
Confidence 64431 1234455554432 2357899999999997 4556789999999999999999765
Q ss_pred CC--CCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------CHHHHH
Q 008664 256 PS--FHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------DARVAL 327 (558)
Q Consensus 256 ~~--~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------d~R~~~ 327 (558)
+. ..++++|.+||..+.|++|+.+++..+++..+..+... .++.++++++..+++.+.| -++.++
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~-------~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVH-------HGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHH-------TTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhh-------cCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 43 45789999999999999999999999999888764432 5788999999999987543 488999
Q ss_pred HHHHHHHHHhcc
Q 008664 328 NALEISAITAAV 339 (558)
Q Consensus 328 ~~Le~a~~~a~~ 339 (558)
.+++.++.....
T Consensus 383 ~lldea~a~~~~ 394 (854)
T 1qvr_A 383 DLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998876553
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.82 E-value=1.3e-18 Score=181.67 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=165.6
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHc----CCCC--eEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCS----NRLP--SIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~----~~~~--~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~ 192 (558)
..+|..+|+| ++++|++..+ ..+..++.. .... +++|+||||||||++++.+++.+.. ...++.++
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~---~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQL---QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHH---HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred HhhcCCccCC---CCCCChHHHH---HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 3467778888 6799999887 777777765 3334 8999999999999999999999853 26888888
Q ss_pred cccccH--HHHHH------------------HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc------CcE
Q 008664 193 AVTSGV--KDVRD------------------AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED------GSI 246 (558)
Q Consensus 193 ~~~~~~--~~i~~------------------~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~------~~i 246 (558)
|..... .-+.. ++..........+.+.||||||+|.++...+..|+.++++ ..+
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~ 160 (389)
T 1fnn_A 81 GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRI 160 (389)
T ss_dssp TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCE
T ss_pred CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCE
Confidence 755321 11111 1122211111234578999999999999999999999865 467
Q ss_pred EEEeccCCCC-CCCCcHHhhcccc--eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC----
Q 008664 247 VFIGATTENP-SFHLITPLLSRCR--VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC---- 319 (558)
Q Consensus 247 ilI~att~n~-~~~l~~aL~sR~~--~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s---- 319 (558)
.+|++++... ...+.+.+.+||. .+.|+|++.+++..++...+... .....+++++++.|++.+
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG---------LAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH---------BCTTSSCHHHHHHHHHHHSBSS
T ss_pred EEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh---------cCCCCCCHHHHHHHHHHHhhcc
Confidence 7777764321 1357888999985 79999999999999999987641 123478999999999997
Q ss_pred -----CCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 320 -----DGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 320 -----~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
+||+|.++++++.+...+..+ + ...|+.+++.+++...
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~-------------~-------~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQN-------------G-------RKHIAPEDVRKSSKEV 274 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHT-------------T-------CSSCCHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHh-------------C-------CCCcCHHHHHHHHHHH
Confidence 899999999999998776431 2 3469999999887753
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.81 E-value=7e-19 Score=187.64 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=154.6
Q ss_pred CCCCCccccccccCCchHHHHHHHH---cC---------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVC---SN---------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~---~~---------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
..+|+||+|+++.+ ..+...+. .. ...+++|+||||||||++|++++..++ .+|+.+++...
T Consensus 12 ~~~f~di~G~~~~~---~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f~~is~~~~~ 86 (476)
T 2ce7_A 12 RVTFKDVGGAEEAI---EELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSDFV 86 (476)
T ss_dssp CCCGGGCCSCHHHH---HHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGTT
T ss_pred CCCHHHhCCcHHHH---HHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCeeeCCHHHHH
Confidence 44899999999987 55554443 21 236899999999999999999999998 88999987653
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc----CcEEEEecc
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED----GSIVFIGAT 252 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~----~~iilI~at 252 (558)
+...++.++..+.. ..++||||||+|.+.. ..++.|+..|+. ..+++|++|
T Consensus 87 ~~~~g~~~~~~r~lf~~A~~-----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 87 ELFVGVGAARVRDLFAQAKA-----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp TCCTTHHHHHHHHHHHHHHH-----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HHHhcccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 34556777777654 3689999999998743 245677777763 467888877
Q ss_pred CCCCCCCCcHHhhc--ccc-eeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCCCH-HHHH
Q 008664 253 TENPSFHLITPLLS--RCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDGDA-RVAL 327 (558)
Q Consensus 253 t~n~~~~l~~aL~s--R~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~Gd~-R~~~ 327 (558)
|....+++++++ ||. .+.|++|+.++..+|++..+.. . .+.++ .+..|+..|.|+. |.+.
T Consensus 162 --n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~-----------~--~l~~~v~l~~la~~t~G~sgadL~ 226 (476)
T 2ce7_A 162 --NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN-----------K--PLAEDVNLEIIAKRTPGFVGADLE 226 (476)
T ss_dssp --SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-----------S--CBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred --CChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh-----------C--CCcchhhHHHHHHhcCCCcHHHHH
Confidence 555678899987 774 8899999999999998877644 1 22222 3778999999987 8999
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
++++.+...+..+ + ...|+.+++.+++.+..
T Consensus 227 ~lv~~Aal~A~~~-------------~-------~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 227 NLVNEAALLAARE-------------G-------RDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHHHHHT-------------T-------CSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-------------C-------CCeecHHHHHHHHHHHh
Confidence 9999988776431 2 34699999999987643
No 54
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=3.6e-19 Score=189.78 Aligned_cols=191 Identities=23% Similarity=0.357 Sum_probs=149.9
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHh-CCCceEEE
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVC 190 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~ 190 (558)
+...+.+.+|++|+|++..+ ..+..++.. ...+++||+||||||||++|+++|+.+ + ..|+.
T Consensus 124 i~~~~~~~~~~di~G~~~~k---~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~ 198 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAK---EALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFS 198 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHH---HHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEE
T ss_pred eeccCCCCCHHHhcCHHHHH---HHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEE
Confidence 45567788999999999987 778777631 234789999999999999999999998 6 78888
Q ss_pred Eecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------HHHHHHHHhhHhc-----CcEE
Q 008664 191 LSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------KSQQDSFLPVIED-----GSIV 247 (558)
Q Consensus 191 l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~~~~~~Ll~~le~-----~~ii 247 (558)
+++... ....++.++..+.. ..++||||||||.+. ...++.|+..++. ..++
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHH-----SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 887654 12345666666543 367999999999883 3466778888764 4578
Q ss_pred EEeccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHH
Q 008664 248 FIGATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARV 325 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~ 325 (558)
+|++| |....+++++++|| .++.++.++.++...|++..+.. ....+++..++.|++.+.| ..+.
T Consensus 274 vI~at--n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~-----------~~~~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 274 VLGAT--NIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS-----------TQNSLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp EEEEE--SCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT-----------SCEECCHHHHHHHHHHTTTCCHHH
T ss_pred EEecC--CCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc-----------CCCCCCHHHHHHHHHHcCCCCHHH
Confidence 88877 55678999999999 48889999999999999988765 5666789999999999988 6777
Q ss_pred HHHHHHHHHHHh
Q 008664 326 ALNALEISAITA 337 (558)
Q Consensus 326 ~~~~Le~a~~~a 337 (558)
+.++++.++..+
T Consensus 341 l~~l~~~a~~~a 352 (444)
T 2zan_A 341 ISIIVRDALMQP 352 (444)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHH
Confidence 777887776543
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.80 E-value=8.4e-20 Score=207.63 Aligned_cols=202 Identities=17% Similarity=0.247 Sum_probs=154.8
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceEE
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKFV 189 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~i 189 (558)
.....+|+++++|..+++++|+++.+ ..+..++.....+++||+||||||||++|+++|+.+. ....++
T Consensus 164 ~~~~~~l~~~~~~~~ld~iiG~~~~i---~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 164 DSLARDLTAIAKEDSLDPVIGRSKEI---QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHH---HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHHHHHHHHHHhhCCCCCccCchHHH---HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 34467899999999999999999998 8999999888889999999999999999999999972 126677
Q ss_pred EEecccc----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCC---CCCcH
Q 008664 190 CLSAVTS----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPS---FHLIT 262 (558)
Q Consensus 190 ~l~~~~~----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~---~~l~~ 262 (558)
.+++... ....++.++..+.. ..+.||||| ...+.++.|++.++.+.+++|++||.+.+ ..+++
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~-----~~~~iLfiD----~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQ-----AGNIILFID----AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp CC----------CTTHHHHHHHHHT-----CCCCEEEEC----C--------CCCTTSSSCEEEEECCTTTTHHHHTTCS
T ss_pred EecccccccchHHHHHHHHHHHHHh-----cCCEEEEEc----CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccH
Confidence 6665111 12246666766643 367899999 55678899999999999999999987663 46899
Q ss_pred HhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008664 263 PLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNC------DGDARVALNALEISAIT 336 (558)
Q Consensus 263 aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s------~Gd~R~~~~~Le~a~~~ 336 (558)
+|.+||+++.|++|+.+++..+++..+..+... .++.++++++..+++.+ ...++.++.+++.++..
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~-------~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDRYEAH-------HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGG-------SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 999999999999999999999999876653322 57789999999998874 33568899999888765
Q ss_pred hc
Q 008664 337 AA 338 (558)
Q Consensus 337 a~ 338 (558)
..
T Consensus 385 ~~ 386 (758)
T 3pxi_A 385 VR 386 (758)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.80 E-value=3.5e-19 Score=183.61 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=149.6
Q ss_pred hcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC---------------------
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS--------------------- 185 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~--------------------- 185 (558)
.-+|.+|++++|+++.+ ..+..........++||+||||||||++|+++++.+...
T Consensus 17 ~~~~~~f~~i~G~~~~~---~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMK---LALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWAT 93 (350)
T ss_dssp -CCCCCGGGSCSCHHHH---HHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCC
T ss_pred CCCCCCchhccChHHHH---HHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhh
Confidence 34677899999999865 555544444445679999999999999999999988620
Q ss_pred ----------ceEEEEecccccHHHH------HHHHHHHHHh----hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC-
Q 008664 186 ----------YKFVCLSAVTSGVKDV------RDAVEDARKL----RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG- 244 (558)
Q Consensus 186 ----------~~~i~l~~~~~~~~~i------~~~~~~~~~~----~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~- 244 (558)
..++.+.... ...++ ...+...... ......+++|||||+|.++...++.|+..++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 94 VLSTNVIRKPTPVVDLPLGV-SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CSCCCEEEECCCEEEECTTC-CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred hhccccccCCCcccccCCCc-chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence 1222222111 11111 1111111000 001124789999999999999999999999875
Q ss_pred --------------cEEEEeccCCCC-CCCCcHHhhcccce-eeccCCC-HHHHHHHHHHHHHhHh--------------
Q 008664 245 --------------SIVFIGATTENP-SFHLITPLLSRCRV-LTLNPLK-PHDVEILLKRAVDDVN-------------- 293 (558)
Q Consensus 245 --------------~iilI~att~n~-~~~l~~aL~sR~~~-i~~~~l~-~~~i~~iL~~~l~~~~-------------- 293 (558)
.+++|++| |+ ...++++|++||.+ +.+++++ .++...++.+.+....
T Consensus 173 ~~~~~~g~~~~~~~~~~li~~~--n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 250 (350)
T 1g8p_A 173 NVVERDGLSIRHPARFVLVGSG--NPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDM 250 (350)
T ss_dssp EEECCTTCCEEEECCEEEEEEE--CSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEEEecceEEeeCCceEEEEEe--CCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchH
Confidence 57777777 44 34789999999975 9999995 5555577765321100
Q ss_pred ---ccc-ccccCCcccccChHHHHHHHHhCCC----CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCcccc
Q 008664 294 ---NGL-SKSVGGTRVEVNHDAIEFLCSNCDG----DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALV 365 (558)
Q Consensus 294 ---~~~-~~~~~~~~~~i~~~al~~La~~s~G----d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~I 365 (558)
..+ ........+.++++++++|++++.+ ++|.++++++.+...+..+ + ...|
T Consensus 251 ~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~-------------~-------~~~v 310 (350)
T 1g8p_A 251 DIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALE-------------G-------ATAV 310 (350)
T ss_dssp HHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT-------------T-------CSBC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc-------------C-------CCcC
Confidence 000 0000114568999999999998555 8999999999988877542 2 3469
Q ss_pred CHHHHHHHHhh
Q 008664 366 TLDDAKEAFQC 376 (558)
Q Consensus 366 t~e~v~~~l~~ 376 (558)
+.+++++++..
T Consensus 311 ~~~~v~~a~~~ 321 (350)
T 1g8p_A 311 GRDHLKRVATM 321 (350)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998874
No 57
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=176.64 Aligned_cols=188 Identities=24% Similarity=0.370 Sum_probs=141.0
Q ss_pred hcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
...+.+|++++|++..+ ..+..++.. ....+++|+||||||||++|+++|+.++ ..++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~---~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVK---RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHH---HHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCHHHhCCHHHHH---HHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 34566889999999988 777777653 2346899999999999999999999998 89999987
Q ss_pred ccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--------------HHHHHHhhHhc----CcEEE
Q 008664 194 VTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIED----GSIVF 248 (558)
Q Consensus 194 ~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le~----~~iil 248 (558)
... ....++.++..+... .+++|||||+|.+... .++.|+..++. ..+++
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHT-----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhc-----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 543 234466677766442 6799999999987543 36778888874 46888
Q ss_pred EeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHH
Q 008664 249 IGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DAR 324 (558)
Q Consensus 249 I~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R 324 (558)
|++| |....+++++++ || ..+.|++|+.++...+++..+.. ..+. .+..++.|+..+.| ..+
T Consensus 158 i~at--n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~-----------~~~~-~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 158 IGAT--NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-----------SPVA-KDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEE--SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-----------SCBC-SSCCHHHHHHTCSSCCHH
T ss_pred EEec--CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc-----------CCCC-ccchHHHHHHHcCCCCHH
Confidence 8877 555678999998 88 48999999999999999888755 2221 12235566766554 456
Q ss_pred HHHHHHHHHHHHhc
Q 008664 325 VALNALEISAITAA 338 (558)
Q Consensus 325 ~~~~~Le~a~~~a~ 338 (558)
.+.++++.++..+.
T Consensus 224 dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 224 DLTEICQRACKLAI 237 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888776654
No 58
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=1.2e-19 Score=186.08 Aligned_cols=226 Identities=17% Similarity=0.210 Sum_probs=161.2
Q ss_pred CCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHH
Q 008664 122 APLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKD 200 (558)
Q Consensus 122 ~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~ 200 (558)
.+|.++++|..+++++|+++.+ ..+..++..+ .++||+||||||||++|+++++.++ ..++.+++... ...+
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~---~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~--~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMI---NRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD--LDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHH---HHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHhccceeCcHHHH---HHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC--CCeEEEecCCCCChhh
Confidence 3689999999999999999988 7777777665 5899999999999999999999998 67777776422 1111
Q ss_pred HHHH--HHHHHHh-hhhcC--CceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----
Q 008664 201 VRDA--VEDARKL-RVKSN--KRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS----- 257 (558)
Q Consensus 201 i~~~--~~~~~~~-~~~~~--~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~----- 257 (558)
+... +...... ....+ ..+||||||+|+++...++.|++.++++. +++|+++ |+.
T Consensus 88 l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~--np~~~~~~ 165 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQ--NPVEQEGT 165 (331)
T ss_dssp HHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEE--CTTCCSCC
T ss_pred cCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEec--CCCcccCc
Confidence 1100 0000000 00001 13699999999999999999999998753 4455444 432
Q ss_pred CCCcHHhhcccc-eeeccCCCHHHHHHHHHHHHHhHhccccc-c----------cCCcccccChHHHHHHHHhC-----C
Q 008664 258 FHLITPLLSRCR-VLTLNPLKPHDVEILLKRAVDDVNNGLSK-S----------VGGTRVEVNHDAIEFLCSNC-----D 320 (558)
Q Consensus 258 ~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~~~l~~~~~~~~~-~----------~~~~~~~i~~~al~~La~~s-----~ 320 (558)
+.++++|++||. .+.+.+++.++...+++..+......... . ....++.+++++++++++.+ .
T Consensus 166 ~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~ 245 (331)
T 2r44_A 166 YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFP 245 (331)
T ss_dssp CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSG
T ss_pred ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcc
Confidence 248999999997 59999999999999998876431000000 0 00036788999999998753 2
Q ss_pred C---------------CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 321 G---------------DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 321 G---------------d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
+ ++|.++++++.+...+... + ...|+.+++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-------------g-------~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 246 AEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-------------N-------RDYVLPEDIKEVAYD 296 (331)
T ss_dssp GGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-------------T-------CSBCCHHHHHHHHHH
T ss_pred ccccccccccccccCcChhHHHHHHHHHHHHHHHc-------------C-------CCCCCHHHHHHHHHH
Confidence 2 6999999999988776542 3 457999999998874
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.79 E-value=4.1e-19 Score=180.16 Aligned_cols=196 Identities=21% Similarity=0.336 Sum_probs=147.3
Q ss_pred CccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHH-HHH
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVK-DVR 202 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~-~i~ 202 (558)
++++||+..+ ..+...+.... ..+++|+||||||||++|+++++.+.. ..+++.+++...... ...
T Consensus 17 ~~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAI---RAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHH---HHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHH---HHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 3588999888 77777776542 247999999999999999999999842 356888887654221 111
Q ss_pred HH---------------HHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC-------------cEEEEeccCC
Q 008664 203 DA---------------VEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG-------------SIVFIGATTE 254 (558)
Q Consensus 203 ~~---------------~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~-------------~iilI~att~ 254 (558)
.+ +..+. ....+++|||||+|.++...++.|+++|+++ .+++|++|+.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~----~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAV----RRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHH----HHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred HhcCCCCccccccccchHHHHH----HhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 11 11221 1235689999999999999999999999874 3447777743
Q ss_pred CC------------------------CCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccCh
Q 008664 255 NP------------------------SFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNH 309 (558)
Q Consensus 255 n~------------------------~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~ 309 (558)
.. ...+.++|++|| .++.|.|++.+++..++...+.++...+.. ....+.+++
T Consensus 170 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~ 247 (311)
T 4fcw_A 170 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE--KRISLELTE 247 (311)
T ss_dssp THHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT--TTCEEEECH
T ss_pred CHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh--CCcEEEeCH
Confidence 10 235788999999 688999999999999999988876554411 124678999
Q ss_pred HHHHHHHHh-C--CCCHHHHHHHHHHHHHHhc
Q 008664 310 DAIEFLCSN-C--DGDARVALNALEISAITAA 338 (558)
Q Consensus 310 ~al~~La~~-s--~Gd~R~~~~~Le~a~~~a~ 338 (558)
++++.|+++ | +||+|.+.++++.++..+.
T Consensus 248 ~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 248 AAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 999999997 6 7999999999999887543
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.77 E-value=7.1e-20 Score=181.99 Aligned_cols=208 Identities=23% Similarity=0.323 Sum_probs=149.7
Q ss_pred hcCCCCCCccccccccCCchHHHHHHHHc------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCS------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l~~~i~~------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
+..+.+|++++|++..+ ..+..++.. ....+++|+||||||||++|+++++.++ .+++.+++.
T Consensus 4 ~~~~~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~v~~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAK---EEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPFFSMGGS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTH---HHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCCCCCCSC
T ss_pred cCCCCCHHHhCCcHHHH---HHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEechH
Confidence 45567899999999998 666666542 2236799999999999999999999998 677777764
Q ss_pred cc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH---------------HHHHHHhhHhc-----CcEE
Q 008664 195 TS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS---------------QQDSFLPVIED-----GSIV 247 (558)
Q Consensus 195 ~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~---------------~~~~Ll~~le~-----~~ii 247 (558)
.. +...++.++..+.. ..++||||||+|.+... .++.|+..++. ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 153 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKK-----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHH-----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCE
T ss_pred HHHHhhcchHHHHHHHHHHHHHh-----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEE
Confidence 42 22334455655543 25789999999998654 24567777754 2367
Q ss_pred EEeccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CH
Q 008664 248 FIGATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DA 323 (558)
Q Consensus 248 lI~att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~ 323 (558)
+|++| |....+++++++ || ..+.|++|+.++...+++..+.. ..+. ++..++.|++.+.| ..
T Consensus 154 vi~tt--n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~-----------~~~~-~~~~~~~la~~~~g~~g 219 (268)
T 2r62_A 154 VLAAT--NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG-----------VKLA-NDVNLQEVAKLTAGLAG 219 (268)
T ss_dssp EEECB--SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS-----------SCCC-SSCCTTTTTSSSCSSCH
T ss_pred EEEec--CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc-----------CCCC-CccCHHHHHHHcCCCCH
Confidence 77776 555678899998 66 57899999999999999877643 1111 22235567777766 56
Q ss_pred HHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcc
Q 008664 324 RVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKH 378 (558)
Q Consensus 324 R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~ 378 (558)
|.+.++++.+...+..+ + ...|+.+++.+++....
T Consensus 220 ~dl~~l~~~a~~~a~~~-------------~-------~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 220 ADLANIINEAALLAGRN-------------N-------QKEVRQQHLKEAVERGI 254 (268)
T ss_dssp HHHHHHHHHHHHTTSSS-------------C-------CCSCCHHHHHTSCTTCC
T ss_pred HHHHHHHHHHHHHHHHh-------------c-------cCCcCHHHHHHHHHHHh
Confidence 88999999998877541 2 35799999999887654
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.77 E-value=1.5e-18 Score=181.30 Aligned_cols=220 Identities=19% Similarity=0.284 Sum_probs=148.6
Q ss_pred ccccccccCCchHHHHHHHH----c--------------------------CCCCeEEEEcCCCchHHHHHHHHHHHhCC
Q 008664 135 DVVGQDHLLSPNSLLRSAVC----S--------------------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAV 184 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~----~--------------------------~~~~~~LL~GppGtGKTtLa~~la~~l~~ 184 (558)
.|+||++++ +.+..++. . ....++||+||||||||++|+++|+.++
T Consensus 22 ~viGq~~ak---~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~- 97 (376)
T 1um8_A 22 YVIGQEQAK---KVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD- 97 (376)
T ss_dssp TCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT-
T ss_pred HccCcHHHH---HHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC-
Confidence 589999987 77766662 1 1246899999999999999999999998
Q ss_pred CceEEEEecccccHH-----HHHHHHHHHHHhh---hhcCCceEEEEeCCccCCHH--------------HHHHHHhhHh
Q 008664 185 SYKFVCLSAVTSGVK-----DVRDAVEDARKLR---VKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIE 242 (558)
Q Consensus 185 ~~~~i~l~~~~~~~~-----~i~~~~~~~~~~~---~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le 242 (558)
.+++.+++...... ..+..+....... .....++||||||+|.+... .++.|+.+|+
T Consensus 98 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 98 -IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred -CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 88898888654211 1122222221110 01225789999999999887 9999999999
Q ss_pred cCc-----------------------EEEEeccCC--------------------------CC-------------CCCC
Q 008664 243 DGS-----------------------IVFIGATTE--------------------------NP-------------SFHL 260 (558)
Q Consensus 243 ~~~-----------------------iilI~att~--------------------------n~-------------~~~l 260 (558)
++. +++|++++. ++ ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTC
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCC
Confidence 642 356655431 00 2246
Q ss_pred cHHhhccc-ceeeccCCCHHHHHHHHHH----HHHhHhcccccccCCcccccChHHHHHHHHh-C--CCCHHHHHHHHHH
Q 008664 261 ITPLLSRC-RVLTLNPLKPHDVEILLKR----AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-C--DGDARVALNALEI 332 (558)
Q Consensus 261 ~~aL~sR~-~~i~~~~l~~~~i~~iL~~----~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s--~Gd~R~~~~~Le~ 332 (558)
.++|.+|| .++.|+|++.+++..++.. ++.++...+. ..+..+.++++++++|++. + .||+|.+.++++.
T Consensus 257 ~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 257 IPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFK--MDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHH--TTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred ChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHh--hcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 78999999 7899999999999999973 4333222210 0124678999999999998 3 3999999999999
Q ss_pred HHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 333 SAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 333 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
++..+..+. ....+ ....||.+++++...
T Consensus 335 ~~~~~~~~~--------~~~~~------~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 335 FCLDIMFDL--------PKLKG------SEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHTG--------GGGTT------SEEEECHHHHTTSSC
T ss_pred HHHHHHhhc--------cCCCC------CEEEEeHHHhcCCCC
Confidence 987543210 00001 134699999987554
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=9.7e-19 Score=199.03 Aligned_cols=256 Identities=15% Similarity=0.213 Sum_probs=171.5
Q ss_pred CCCCCCCCccchhHHhhhhhhhhhc----ccCCCCcchhhhcccccCCCCCccCCCCCCCchhhcCCCCCCccccccccC
Q 008664 68 KLDRFFHFQTKPSSAAANAVQEKEK----DREIEPSPLFKRLKTRHDVDSTTALHVPHAPLSERMRPVNINDVVGQDHLL 143 (558)
Q Consensus 68 ~~~~~lp~k~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~dviGq~~~i 143 (558)
..++++|++.++++++|.+...... ...+..............++........ ..........-..+++||++.+
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~-~~~l~~l~~~l~~~v~g~~~~~ 467 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSD-RDTLKNLGDRLKMLVFGQDKAI 467 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSH-HHHHHHHHHHHTTTSCSCHHHH
T ss_pred cccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhH-HHHHHHHHHHHHhhccCHHHHH
Confidence 4567888999999998876655421 1223333333333333333221110000 0000111111235689999888
Q ss_pred CchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc-----------------
Q 008664 144 SPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG----------------- 197 (558)
Q Consensus 144 ~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~----------------- 197 (558)
..+..++.... ..++||+||||||||++|+++++.++ ..++.++++...
T Consensus 468 ---~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~--~~~~~i~~s~~~~~~~~~~l~g~~~g~~g 542 (758)
T 1r6b_X 468 ---EALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAPPGYVG 542 (758)
T ss_dssp ---HHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGCSSSSCCSSSCCCCSCSHH
T ss_pred ---HHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCEEEEechhhcchhhHhhhcCCCCCCcC
Confidence 77777665421 24799999999999999999999998 889999876431
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-------
Q 008664 198 VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS------- 257 (558)
Q Consensus 198 ~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~------- 257 (558)
......+.+..+ ...++|||||||+.++++.++.|+++|+++. +++|++|+....
T Consensus 543 ~~~~~~l~~~~~-----~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~ 617 (758)
T 1r6b_X 543 FDQGGLLTDAVI-----KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_dssp HHHTTHHHHHHH-----HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-------
T ss_pred ccccchHHHHHH-----hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhccc
Confidence 111122222222 2368999999999999999999999999764 447776643211
Q ss_pred ----------------CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-C
Q 008664 258 ----------------FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-C 319 (558)
Q Consensus 258 ----------------~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s 319 (558)
..+.++|++|| .++.|+|++.+++..|+...+.++...+.. ....+.++++++++|++. |
T Consensus 618 g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~~a~~~l~~~~~ 695 (758)
T 1r6b_X 618 GLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ--KGVSLEVSQEARNWLAEKGY 695 (758)
T ss_dssp ----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--TTEEEEECHHHHHHHHHHHC
T ss_pred CccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH--CCcEEEeCHHHHHHHHHhCC
Confidence 15678999999 689999999999999999998865444311 112568999999999987 5
Q ss_pred CCC--HHHHHHHHHHHHHH
Q 008664 320 DGD--ARVALNALEISAIT 336 (558)
Q Consensus 320 ~Gd--~R~~~~~Le~a~~~ 336 (558)
+++ +|.+.++++.++..
T Consensus 696 ~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 696 DRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp BTTTBTTTHHHHHHHHHTH
T ss_pred CcCCCchHHHHHHHHHHHH
Confidence 554 99999999988764
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=1.7e-18 Score=196.92 Aligned_cols=230 Identities=16% Similarity=0.231 Sum_probs=174.8
Q ss_pred CCCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--------CCceE
Q 008664 117 LHVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--------VSYKF 188 (558)
Q Consensus 117 ~~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--------~~~~~ 188 (558)
......+|+++++|..|++++|+++.+ ..+...+......+++|+||||||||++|+.+++.+. ....+
T Consensus 169 l~~~~~~l~~~~~~~~~d~~iGr~~~i---~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 169 LENFTTNLNQLARVGGIDPLIGREKEL---ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp CCSSSCBHHHHHHTTCSCCCCSCHHHH---HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHHHhHhHHHHHhcCCCCCccCCHHHH---HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 455667899999999999999999998 8899999888889999999999999999999999873 12455
Q ss_pred EEEecccc---------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccC---------CHHHHHHHHhhHhcCcEEEEe
Q 008664 189 VCLSAVTS---------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRF---------NKSQQDSFLPVIEDGSIVFIG 250 (558)
Q Consensus 189 i~l~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l---------~~~~~~~Ll~~le~~~iilI~ 250 (558)
+.++.... ....++.++..+. ...+.||||||+|.+ ..+.++.|.++++.+.+.+|+
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~-----~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~ 320 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLE-----QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIG 320 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHS-----SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEE
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHH-----hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEE
Confidence 55443221 1334555555542 235799999999998 345577888889999999999
Q ss_pred ccCCCC---CCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC------
Q 008664 251 ATTENP---SFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG------ 321 (558)
Q Consensus 251 att~n~---~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G------ 321 (558)
+|+... ...++++|.+||..+.|.+|+.+++..+++..+..+... .++.++++++..++..+.|
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~-------~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHH-------HTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHhhhhccccc
Confidence 997542 346778999999999999999999999999887764432 5678899999999887443
Q ss_pred CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 322 DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 322 d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
.+..++.+++.++...... +...+ ...|+.+++.+++...
T Consensus 394 lp~~~i~lld~a~~~~~~~---------~~~~~-------~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLM---------PVSKR-------KKTVNVADIESVVARI 433 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHS---------SSCCC-------CCSCCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcc---------ccccc-------CCccCHHHHHHHHHHh
Confidence 4668888888887654321 00001 3469999999988753
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=1.1e-18 Score=198.55 Aligned_cols=194 Identities=21% Similarity=0.315 Sum_probs=145.6
Q ss_pred CccccccccCCchHHHHHHHHcCCC---------CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHH---
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNRL---------PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKD--- 200 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~~---------~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~--- 200 (558)
++++||++.+ ..+...+...+. .++||+||||||||++|+++|+.+. ...+++.++++......
T Consensus 491 ~~viGq~~a~---~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAV---VAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHH---HHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHH---HHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 4689999988 777777765321 2799999999999999999999983 34789999986542111
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC----------
Q 008664 201 VRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS---------- 257 (558)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~---------- 257 (558)
...+.+..+ ...++|||||||+.++.+.++.|+++|+++. +++|++|+....
T Consensus 568 ~~~l~~~~~-----~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~ 642 (758)
T 3pxi_A 568 GGQLTEKVR-----RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELK 642 (758)
T ss_dssp ---CHHHHH-----HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHH
T ss_pred cchhhHHHH-----hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHH
Confidence 111222222 2367899999999999999999999999854 467777642221
Q ss_pred CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHH
Q 008664 258 FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEIS 333 (558)
Q Consensus 258 ~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a 333 (558)
..+.++|++|| .++.|+|++.+++..|+...+..+...+.+. +..+.++++++++|++. |.|++|.+.+.++++
T Consensus 643 ~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 643 RAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ--DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTT--TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred hhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC--CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 12789999999 7999999999999999999988765554221 35678999999999885 899999999999987
Q ss_pred HHHh
Q 008664 334 AITA 337 (558)
Q Consensus 334 ~~~a 337 (558)
+...
T Consensus 721 v~~~ 724 (758)
T 3pxi_A 721 VEDR 724 (758)
T ss_dssp THHH
T ss_pred HHHH
Confidence 6543
No 65
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=3.3e-18 Score=186.72 Aligned_cols=228 Identities=18% Similarity=0.238 Sum_probs=152.8
Q ss_pred CCccccccccCCchHHHHHHHHc------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccH-HHH----
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCS------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGV-KDV---- 201 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~-~~i---- 201 (558)
.++++|++++. ..+...+.. ....+++|+|||||||||+|++|+..++ ..+..+++..... ..+
T Consensus 80 ~~di~G~~~vk---~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 80 DEEHHGLEKVK---ERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHHCSSCHHHH---HHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-----------
T ss_pred HHHhccHHHHH---HHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccchhhhhhhHH
Confidence 35688888876 555444332 1236899999999999999999999998 7888887754211 111
Q ss_pred ----HHHHHHHHHh-hhhcCCceEEEEeCCccCCHH----HHHHHHhhHhc-----------------CcEEEEeccCCC
Q 008664 202 ----RDAVEDARKL-RVKSNKRTVLFVDEVHRFNKS----QQDSFLPVIED-----------------GSIVFIGATTEN 255 (558)
Q Consensus 202 ----~~~~~~~~~~-~~~~~~~~il~IDEid~l~~~----~~~~Ll~~le~-----------------~~iilI~att~n 255 (558)
.......... ........|+||||||.+..+ .++.|++.|+. ..+++|++| |
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt--N 232 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA--N 232 (543)
T ss_dssp ---------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC--S
T ss_pred HHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc--C
Confidence 0000001100 011224569999999999887 45889999864 235677655 6
Q ss_pred CCCCCcHHhhcccceeeccCCCHHHHHHHHHHHHHhH-hcccccccCCcccccChHHHHHHHHh--CCCCHHHHHHHHHH
Q 008664 256 PSFHLITPLLSRCRVLTLNPLKPHDVEILLKRAVDDV-NNGLSKSVGGTRVEVNHDAIEFLCSN--CDGDARVALNALEI 332 (558)
Q Consensus 256 ~~~~l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~-~~~~~~~~~~~~~~i~~~al~~La~~--s~Gd~R~~~~~Le~ 332 (558)
....++++|++||.++.|++++.++...++...+... .... ......+.++++++..|++. +.|++|.+.+.++.
T Consensus 233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~--~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~ 310 (543)
T 3m6a_A 233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEH--GLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAA 310 (543)
T ss_dssp STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHT--TCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHH
T ss_pred ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHc--CCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHH
Confidence 6778999999999999999999999999998876331 1111 00124678899999998875 67999999999999
Q ss_pred HHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhccccccC
Q 008664 333 SAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYDR 383 (558)
Q Consensus 333 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d~ 383 (558)
++..+... ......+ ...||.++++++++.....+++
T Consensus 311 ~~~~aa~~-------~~~~~~~-------~~~It~~~l~~~Lg~~~~~~e~ 347 (543)
T 3m6a_A 311 ICRKAAKA-------IVAEERK-------RITVTEKNLQDFIGKRIFRYGQ 347 (543)
T ss_dssp HHHHHHHH-------HHTTCCS-------CCEECTTTTHHHHCSCCSCCST
T ss_pred HHHHHHHH-------HHhcCCc-------ceecCHHHHHHHhCCcccCchh
Confidence 88765431 0011112 4579999999999987665554
No 66
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.75 E-value=5e-18 Score=182.05 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=148.5
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcC---------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccccc--
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSN---------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSG-- 197 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~---------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~-- 197 (558)
.+.+|++|+|+++.+.....+...+... ...+++|+||||||||+|+++|+..++ ..++.+++.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHh
Confidence 5678999999999873333333333321 135799999999999999999999998 889999886542
Q ss_pred -----HHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhcC----cEEEEeccCC
Q 008664 198 -----VKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIEDG----SIVFIGATTE 254 (558)
Q Consensus 198 -----~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~~----~iilI~att~ 254 (558)
...++.+++.+. ...++++||||||.+.. ...+.|+..|+.+ .+++|++| +
T Consensus 104 ~~g~~~~~v~~lfq~a~-----~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat-n 177 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAK-----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT-N 177 (499)
T ss_dssp CTTHHHHHHHHHTTTSS-----SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC-S
T ss_pred hhhhHHHHHHHHHHHHH-----hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec-C
Confidence 122333333321 12468999999998742 2345666666642 24555554 3
Q ss_pred CCCCCCcHHhhcc--c-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHH-HHHHHHhCCCCH-HHHHHH
Q 008664 255 NPSFHLITPLLSR--C-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDA-IEFLCSNCDGDA-RVALNA 329 (558)
Q Consensus 255 n~~~~l~~aL~sR--~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~a-l~~La~~s~Gd~-R~~~~~ 329 (558)
++ ..++++++++ | ..+.|.+|+.++..+|++..+ .++.+++++ +..|+..|.|+. |.+.++
T Consensus 178 ~p-~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~-------------~~~~l~~dv~l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 178 RP-DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------RGKPLAEDVDLALLAKRTPGFVGADLENL 243 (499)
T ss_dssp CG-GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT-------------SSSCCCCSSTTHHHHTTSCSCCHHHHHHH
T ss_pred Ch-hhcCcccccccccceEEecCCCCHHHHHHHHHHHH-------------hcCCCChHHHHHHHHHhcCCCCHHHHHHH
Confidence 34 4689999984 4 488999999999999887543 223444443 788999999988 999999
Q ss_pred HHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcccccc
Q 008664 330 LEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYD 382 (558)
Q Consensus 330 Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d 382 (558)
++.++..+..+ + ...|+.+++.+++.+....++
T Consensus 244 v~~Aa~~A~~~-------------~-------~~~It~~dl~~al~~v~~~~~ 276 (499)
T 2dhr_A 244 LNEAALLAARE-------------G-------RRKITMKDLEEAADRVMMLPA 276 (499)
T ss_dssp HHHHHHHHTTT-------------C-------CSSCCSHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHh-------------C-------CCccCHHHHHHHHHHHhcccc
Confidence 99998876541 2 346999999999987654443
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=3.1e-18 Score=159.81 Aligned_cols=158 Identities=19% Similarity=0.306 Sum_probs=122.2
Q ss_pred CCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC--------CceEEEEe
Q 008664 121 HAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--------SYKFVCLS 192 (558)
Q Consensus 121 ~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~--------~~~~i~l~ 192 (558)
..+|.++++|..|++++|+++.+ ..+..++..+...+++|+||||||||++++.+++.+.. ...++.++
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEI---RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHH---HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hHHHHHHHhhccccccccchHHH---HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 35799999999999999999988 88888888877789999999999999999999999731 36677776
Q ss_pred cccc-----cHH----HHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------HHHHHHHhhHhcCcEEEEeccCCC
Q 008664 193 AVTS-----GVK----DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------SQQDSFLPVIEDGSIVFIGATTEN 255 (558)
Q Consensus 193 ~~~~-----~~~----~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------~~~~~Ll~~le~~~iilI~att~n 255 (558)
+... ... .+..++.... ....+.+|||||+|.+.. ..++.|..+++.+.+.+|++|+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHH----HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred HHHHhccCCccccHHHHHHHHHHHHh----hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 5322 111 2333333332 234678999999999963 337788888888888888888543
Q ss_pred CC---CCCcHHhhcccceeeccCCCHHHHHHHH
Q 008664 256 PS---FHLITPLLSRCRVLTLNPLKPHDVEILL 285 (558)
Q Consensus 256 ~~---~~l~~aL~sR~~~i~~~~l~~~~i~~iL 285 (558)
.. ..+++++.+||..+.|.+++.+++.++|
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 2678999999999999999999988765
No 68
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.74 E-value=2.3e-17 Score=177.17 Aligned_cols=189 Identities=21% Similarity=0.342 Sum_probs=144.3
Q ss_pred hhcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 126 ERMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 126 ~~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+..++.+|++++|++..+ ..+..++.. ....++||+||||||||++|+++++.++ .+|+.++
T Consensus 196 ~~~~~~~~~~i~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~vn 270 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQL---AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLIN 270 (489)
T ss_dssp HHHTCCCGGGCCSCHHHH---HHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEEEEEE
T ss_pred cccCCCCHHHcCCHHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCEEEEE
Confidence 356677899999999988 777777653 3347899999999999999999999998 8999999
Q ss_pred cccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEe
Q 008664 193 AVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIG 250 (558)
Q Consensus 193 ~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~ 250 (558)
|... ....++.+|..+.. +.+++|||||||.+.. ..+..|+..|+. ..+++|+
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~-----~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHH-----TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred chHhhhhhcchhHHHHHHHHHHHHh-----cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 7543 23456666766644 3678999999987643 567889999874 5678888
Q ss_pred ccCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHH
Q 008664 251 ATTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVA 326 (558)
Q Consensus 251 att~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~ 326 (558)
+| |....+++++++ || ..+.|.+|+.++...+|+..+.. ..+. .+..+..++..+.| ..+.+
T Consensus 346 aT--n~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~-----------~~l~-~~~~l~~la~~t~g~s~~dL 411 (489)
T 3hu3_A 346 AT--NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----------MKLA-DDVDLEQVANETHGHVGADL 411 (489)
T ss_dssp EE--SCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-----------SCBC-TTCCHHHHHHTCTTCCHHHH
T ss_pred ec--CCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-----------CCCc-chhhHHHHHHHccCCcHHHH
Confidence 77 555578899999 66 47999999999999999987644 2222 22346788888777 56777
Q ss_pred HHHHHHHHHHhc
Q 008664 327 LNALEISAITAA 338 (558)
Q Consensus 327 ~~~Le~a~~~a~ 338 (558)
.++++.+...+.
T Consensus 412 ~~L~~~A~~~a~ 423 (489)
T 3hu3_A 412 AALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777787776654
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=4e-18 Score=177.19 Aligned_cols=226 Identities=19% Similarity=0.255 Sum_probs=150.3
Q ss_pred cccccccCCchHHHHHHHHc---------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHH-
Q 008664 136 VVGQDHLLSPNSLLRSAVCS---------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVK- 199 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~---------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~- 199 (558)
++||+.++ ..+..++.. ....++||+||||||||++|++||+.++ .+|+.+++......
T Consensus 17 i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~--~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 17 VIGQEQAK---KVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD--VPFTMADATTLTEAG 91 (363)
T ss_dssp CCSCHHHH---HHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHTTCH
T ss_pred ccCHHHHH---HHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEechHHhcccc
Confidence 68999887 777777731 1237899999999999999999999998 89999988653211
Q ss_pred --------HHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--------------HHHHHHhhHhcCc------------
Q 008664 200 --------DVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIEDGS------------ 245 (558)
Q Consensus 200 --------~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le~~~------------ 245 (558)
.+..++..+... .....++||||||||.+... .|+.|+++|+...
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~ 170 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYD-VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHP 170 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTC-HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------------
T ss_pred cccccHHHHHHHHHHHhhhh-HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccC
Confidence 122222221000 01124689999999988765 8999999999311
Q ss_pred ---EEEEeccCC------CC----------CC-----------------------------------CCcHHhhcccc-e
Q 008664 246 ---IVFIGATTE------NP----------SF-----------------------------------HLITPLLSRCR-V 270 (558)
Q Consensus 246 ---iilI~att~------n~----------~~-----------------------------------~l~~aL~sR~~-~ 270 (558)
+++|.+|+. +. .. .+.++|++|+. +
T Consensus 171 ~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~ 250 (363)
T 3hws_A 171 QQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 250 (363)
T ss_dssp ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEE
T ss_pred CCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCee
Confidence 112332211 10 00 17899999996 5
Q ss_pred eeccCCCHHHHHHHHHH----HHHhHhcccccccCCcccccChHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcccCCc
Q 008664 271 LTLNPLKPHDVEILLKR----AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDGDARVALNALEISAITAAVRVPV 343 (558)
Q Consensus 271 i~~~~l~~~~i~~iL~~----~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~Gd~R~~~~~Le~a~~~a~~~~~~ 343 (558)
+.|.|++.+++..|+.. .+.++...+.. .+..+.++++++++|++. +++++|.+.+++++++.....+.+
T Consensus 251 ~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~--~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~- 327 (363)
T 3hws_A 251 ATLNELSEEALIQILKEPKNALTKQYQALFNL--EGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP- 327 (363)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHT--TTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT-
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--cCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc-
Confidence 56999999999999886 55543333210 124678999999999974 899999999999999876543210
Q ss_pred cchhhhhccccCCCCCCCccccCHHHHHHHHhhcccccc
Q 008664 344 KEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYD 382 (558)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d 382 (558)
.. .......||.++|++.++.....++
T Consensus 328 -------~~-----~~~~~~~I~~~~v~~~~~~~~~~~~ 354 (363)
T 3hws_A 328 -------SM-----EDVEKVVIDESVIDGQSEPLLIYGK 354 (363)
T ss_dssp -------TC-----CCSEEEECHHHHTTCCSCCEEEC--
T ss_pred -------cc-----cCCceeEEcHHHHhCcCCceeeccC
Confidence 00 0001346888888877765444433
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.73 E-value=3.6e-17 Score=161.19 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=141.4
Q ss_pred hcCCCCCCccccccccCCchHHHHHHHHc---------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCS---------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS- 196 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l~~~i~~---------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~- 196 (558)
...+.+|++++|+++.+.....+...+.. ....+++|+||||||||||+++++..+. ..++.+++...
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHH
Confidence 34566899999998876322333333221 1135699999999999999999999998 77888876432
Q ss_pred ------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH--------------HHHHHHHhhHhc---CcEEEEeccC
Q 008664 197 ------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK--------------SQQDSFLPVIED---GSIVFIGATT 253 (558)
Q Consensus 197 ------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~--------------~~~~~Ll~~le~---~~iilI~att 253 (558)
....++.++..+.. ..+.++|+||+|.+.. ...+.++..++. ..++++.+++
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTT-----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHhhHHHHHHHHHHHHHHh-----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc
Confidence 12234444444321 2568999999986631 124556666654 3344444455
Q ss_pred CCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCCCH-HHHHH
Q 008664 254 ENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDGDA-RVALN 328 (558)
Q Consensus 254 ~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~Gd~-R~~~~ 328 (558)
.++ ..+++++++ || ..+.+++|+.++..++++..+.. ..++++ .+..|+..|.|+. |.+.+
T Consensus 162 ~~p-~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-------------~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 162 NRP-DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-------------KPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp SCG-GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT-------------SCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCc-hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC-------------CCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 444 468999998 55 47899999999999999866532 233333 3788999999976 89999
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHH
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAF 374 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l 374 (558)
+++.+...+..+ + ...||.+++++++
T Consensus 228 ~~~~a~~~a~~~-------------~-------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 228 LLNEAALLAARE-------------G-------RRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHT-------------T-------CSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHh-------------c-------CCCcCHHHHHHHh
Confidence 999988776431 2 3469999998875
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.72 E-value=1.1e-16 Score=159.91 Aligned_cols=205 Identities=23% Similarity=0.337 Sum_probs=140.0
Q ss_pred CCCCCCccccccccCCchHHHHHHHHcC---------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCSN---------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--- 196 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~~---------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--- 196 (558)
.+.+|++++|+++.+.....+...+... ...+++|+||||||||||+++|+..+. ..++.+++.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHH
Confidence 5668999999998873323333332211 125699999999999999999999998 77888876432
Q ss_pred ----cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC-----------H---HHHHHHHhhHhc---CcEEEEeccCCC
Q 008664 197 ----GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN-----------K---SQQDSFLPVIED---GSIVFIGATTEN 255 (558)
Q Consensus 197 ----~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~-----------~---~~~~~Ll~~le~---~~iilI~att~n 255 (558)
....+..++..+.. ..+.++|+||+|.+. . ...+.++..++. ..++++.+++.+
T Consensus 113 ~~~~~~~~i~~~~~~~~~-----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp TTTHHHHHHHHHHHHHHT-----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESC
T ss_pred HhhHHHHHHHHHHHHHHh-----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCC
Confidence 12234445554432 256899999998652 1 123345555544 233444444444
Q ss_pred CCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChH-HHHHHHHhCCCCH-HHHHHHH
Q 008664 256 PSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHD-AIEFLCSNCDGDA-RVALNAL 330 (558)
Q Consensus 256 ~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~-al~~La~~s~Gd~-R~~~~~L 330 (558)
+ ..+++++++ || ..+.|++|+.++..++++..+.. ..++++ .+..|+..|.|+. |.+.+++
T Consensus 188 p-~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-------------~~~~~~~~~~~la~~~~G~~~~dl~~l~ 253 (278)
T 1iy2_A 188 P-DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-------------KPLAEDVDLALLAKRTPGFVGADLENLL 253 (278)
T ss_dssp T-TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-------------SCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred c-hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-------------CCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 4 579999998 55 47899999999999999876532 233333 3788999999987 8899999
Q ss_pred HHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHH
Q 008664 331 EISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAF 374 (558)
Q Consensus 331 e~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l 374 (558)
+.+...+..+ + ...||.+++++++
T Consensus 254 ~~a~~~a~~~-------------~-------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 254 NEAALLAARE-------------G-------RRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHT-------------T-------CCSBCHHHHHHHT
T ss_pred HHHHHHHHHh-------------C-------CCCcCHHHHHHHh
Confidence 9988776431 2 3469999998875
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=7.2e-18 Score=156.89 Aligned_cols=153 Identities=19% Similarity=0.301 Sum_probs=117.5
Q ss_pred CCCCCCchhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC--------CceEE
Q 008664 118 HVPHAPLSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--------SYKFV 189 (558)
Q Consensus 118 ~~~~~~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~--------~~~~i 189 (558)
.....+|.++++|..|++++|++..+ ..+..++......+++|+||||||||++++.+++.+.. ...++
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 6 EKYSRDLTALARAGKLDPVIGRDTEI---RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp TTTEEEHHHHHHTTCSCCCCSCHHHH---HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HHHHHHHHHHHhccccchhhcchHHH---HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 34456899999999999999999887 88888888877789999999999999999999999732 36677
Q ss_pred EEecccc-----cHH----HHHHHHHHHHHhhhhcCCceEEEEeCCccCC---------HHHHHHHHhhHhcCcEEEEec
Q 008664 190 CLSAVTS-----GVK----DVRDAVEDARKLRVKSNKRTVLFVDEVHRFN---------KSQQDSFLPVIEDGSIVFIGA 251 (558)
Q Consensus 190 ~l~~~~~-----~~~----~i~~~~~~~~~~~~~~~~~~il~IDEid~l~---------~~~~~~Ll~~le~~~iilI~a 251 (558)
.+++... ... .+..++..... ...+.+|||||+|.+. ...++.|+..++.+.+++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~ 158 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGA 158 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEe
Confidence 7665322 111 23333333322 2356899999999996 456778888889898999998
Q ss_pred cCCCC---CCCCcHHhhcccceeeccCCC
Q 008664 252 TTENP---SFHLITPLLSRCRVLTLNPLK 277 (558)
Q Consensus 252 tt~n~---~~~l~~aL~sR~~~i~~~~l~ 277 (558)
++... ...+++++.+||..+.+.+|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred cCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 86443 136889999999989988875
No 73
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.71 E-value=3.8e-17 Score=169.78 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=150.3
Q ss_pred CccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHH-HHHH-
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAV-EDAR- 209 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~-~~~~- 209 (558)
.+++|+...+ ..+...+.. ....+++++|++||||+++|+++++..+....|+.++|.......+...+ ....
T Consensus 129 ~~~ig~s~~~---~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g 205 (368)
T 3dzd_A 129 IEFVGEHPKI---LEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKG 205 (368)
T ss_dssp CCCCCCSHHH---HHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSC
T ss_pred ccccccchHH---HHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccc
Confidence 3577877665 444433322 22367999999999999999999999875555999999876544333221 1000
Q ss_pred ---------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCCcH
Q 008664 210 ---------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHLIT 262 (558)
Q Consensus 210 ---------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l~~ 262 (558)
........+++||||||+.|+...|..|+++++++. +.+|++|+.|+. ..+.+
T Consensus 206 ~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~ 285 (368)
T 3dzd_A 206 AFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFRE 285 (368)
T ss_dssp SSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred ccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH
Confidence 000112356799999999999999999999998753 568999987754 35667
Q ss_pred Hhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHHHh
Q 008664 263 PLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAITA 337 (558)
Q Consensus 263 aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~~a 337 (558)
.|..|+. .+.++||.+ +|+..++..++.++...+ +.....+++++++.|..+ |+||+|++.|.+++++..+
T Consensus 286 dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~----~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 286 DLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEY----KKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHT----TCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHc----CCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 8999986 466999988 899999999998876655 445678999999999998 8999999999999999876
Q ss_pred cc
Q 008664 338 AV 339 (558)
Q Consensus 338 ~~ 339 (558)
..
T Consensus 362 ~~ 363 (368)
T 3dzd_A 362 EG 363 (368)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=4e-17 Score=187.68 Aligned_cols=195 Identities=21% Similarity=0.335 Sum_probs=146.8
Q ss_pred CccccccccCCchHHHHHHHHcCC---------CCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccH-----
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNR---------LPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGV----- 198 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~---------~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~----- 198 (558)
++|+||+..+ ..+...+...+ ..++||+||||||||++|++|++.+.+ ..+++.+++.....
T Consensus 558 ~~viG~~~a~---~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAI---RAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHH---HHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHH---HHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence 4689999887 77777776532 148999999999999999999999832 37899998865421
Q ss_pred ------------HHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC-------------cEEEEeccC
Q 008664 199 ------------KDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG-------------SIVFIGATT 253 (558)
Q Consensus 199 ------------~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~-------------~iilI~att 253 (558)
...+.+..... ...++|||||||+.++.+.++.|+++|+++ .+++|++|+
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~-----~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVR-----RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp GC--------------CHHHHHH-----HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred HHcCCCCCCcCccccchHHHHHH-----hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 11122222222 235789999999999999999999999976 345777764
Q ss_pred CC------------------------CCCCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC
Q 008664 254 EN------------------------PSFHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN 308 (558)
Q Consensus 254 ~n------------------------~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~ 308 (558)
.. ....+.++|++|| .++.|.|++.+++..|+...+.++...+.+. +..+.++
T Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~--~~~~~~~ 787 (854)
T 1qvr_A 710 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK--RISLELT 787 (854)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT--TCEEEEC
T ss_pred cChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC--CceEEEC
Confidence 31 0235678999999 6888999999999999999988755544110 1357899
Q ss_pred hHHHHHHHHh-C--CCCHHHHHHHHHHHHHHhc
Q 008664 309 HDAIEFLCSN-C--DGDARVALNALEISAITAA 338 (558)
Q Consensus 309 ~~al~~La~~-s--~Gd~R~~~~~Le~a~~~a~ 338 (558)
++++++|+++ | .||+|.+.++++.++....
T Consensus 788 ~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 788 EAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 9999999997 5 7999999999999876543
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.70 E-value=9.6e-17 Score=180.07 Aligned_cols=184 Identities=21% Similarity=0.337 Sum_probs=139.4
Q ss_pred CCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
...+|+||.|.++.+ ..|+.++.. ..+.++|||||||||||+||+++|++++ .+++.+++.+
T Consensus 199 ~~v~~~dIgGl~~~~---~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQL---AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTH---HHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHH
T ss_pred CCCChhhhcCHHHHH---HHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHH
Confidence 345899999999998 777777653 1237899999999999999999999999 8999998754
Q ss_pred c-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEeccC
Q 008664 196 S-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGATT 253 (558)
Q Consensus 196 ~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~att 253 (558)
. +...++.+|..+.. ..++||||||||.+.+ ...+.|+..|+. +.+++|++|
T Consensus 274 l~sk~~gese~~lr~lF~~A~~-----~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT- 347 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT- 347 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTT-----SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC-
T ss_pred hhcccchHHHHHHHHHHHHHHH-----cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec-
Confidence 2 45668888888754 3789999999998853 245677777754 568888887
Q ss_pred CCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-CHHHHHHH
Q 008664 254 ENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-DARVALNA 329 (558)
Q Consensus 254 ~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-d~R~~~~~ 329 (558)
|....++++|++ || ..|.++.|+.++..+||+..+.. ..+. ++..+..|+..+.| ....+.++
T Consensus 348 -N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-----------~~~~-~dvdl~~lA~~T~GfsgaDL~~L 414 (806)
T 3cf2_A 348 -NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----------MKLA-DDVDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp -SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-----------SEEC-TTCCHHHHHHHCCSCCHHHHHHH
T ss_pred -CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-----------CCCC-cccCHHHHHHhcCCCCHHHHHHH
Confidence 666789999998 78 58999999999999999876533 1111 22347888988776 45555566
Q ss_pred HHHHHHH
Q 008664 330 LEISAIT 336 (558)
Q Consensus 330 Le~a~~~ 336 (558)
+..+...
T Consensus 415 v~eA~~~ 421 (806)
T 3cf2_A 415 CSEAALQ 421 (806)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 76
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.70 E-value=3e-17 Score=163.47 Aligned_cols=179 Identities=18% Similarity=0.316 Sum_probs=123.4
Q ss_pred CccccccccCCc----hHHHHHHHH---cCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc--------cH
Q 008664 134 NDVVGQDHLLSP----NSLLRSAVC---SNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS--------GV 198 (558)
Q Consensus 134 ~dviGq~~~i~~----~~~l~~~i~---~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~--------~~ 198 (558)
..++|+...+.. ...+...+. .....++||+||||||||++|+++++.++ .+++.+++... ..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCEEEEeCHHHhcCCchHHHH
Confidence 346777655411 112344454 33447899999999999999999999998 88888887542 11
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCccC----------CHHHHHHHHhhHhc----C-cEEEEeccCCCCCCCCcH-
Q 008664 199 KDVRDAVEDARKLRVKSNKRTVLFVDEVHRF----------NKSQQDSFLPVIED----G-SIVFIGATTENPSFHLIT- 262 (558)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~~il~IDEid~l----------~~~~~~~Ll~~le~----~-~iilI~att~n~~~~l~~- 262 (558)
..++.++..+.. ..+.+|||||||.+ ....++.|+..++. + .+++|++| |....+++
T Consensus 111 ~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt--n~~~~l~~~ 183 (272)
T 1d2n_A 111 QAMKKIFDDAYK-----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT--SRKDVLQEM 183 (272)
T ss_dssp HHHHHHHHHHHT-----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE--SCHHHHHHT
T ss_pred HHHHHHHHHHHh-----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec--CChhhcchh
Confidence 334455554422 36799999999987 45566777777763 2 35556555 43333444
Q ss_pred Hhhccc-ceeeccCCCH-HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 008664 263 PLLSRC-RVLTLNPLKP-HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDG-----DARVALNALEISAI 335 (558)
Q Consensus 263 aL~sR~-~~i~~~~l~~-~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~G-----d~R~~~~~Le~a~~ 335 (558)
.+.+|| ..+.+++++. +++..++.+. ..++++++..|++.+.| |+|.++++++.+..
T Consensus 184 ~l~~rf~~~i~~p~l~~r~~i~~i~~~~----------------~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 184 EMLNAFSTTIHVPNIATGEQLLEALELL----------------GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp TCTTTSSEEEECCCEEEHHHHHHHHHHH----------------TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred hhhcccceEEcCCCccHHHHHHHHHHhc----------------CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 567886 6889999987 6666665541 13588999999999777 99999999999865
Q ss_pred Hh
Q 008664 336 TA 337 (558)
Q Consensus 336 ~a 337 (558)
.+
T Consensus 248 ~~ 249 (272)
T 1d2n_A 248 MD 249 (272)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 77
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.69 E-value=2e-17 Score=183.17 Aligned_cols=223 Identities=18% Similarity=0.256 Sum_probs=155.9
Q ss_pred chhhcCCCCCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCc-eEEEEecccc------
Q 008664 124 LSERMRPVNINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSY-KFVCLSAVTS------ 196 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~-~~i~l~~~~~------ 196 (558)
...++||+.|++++|+++++ ..+...+..+ .+++|+|||||||||+|++|++.+.... ..+.+.+...
T Consensus 31 ~~~~~rp~~l~~i~G~~~~l---~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~ 105 (604)
T 3k1j_A 31 EEIEVPEKLIDQVIGQEHAV---EVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPR 105 (604)
T ss_dssp GGSCCCSSHHHHCCSCHHHH---HHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCE
T ss_pred CcccccccccceEECchhhH---hhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCc
Confidence 35689999999999999998 8888888887 5899999999999999999999886332 2222221110
Q ss_pred ------c-HHHHH--------------------------------------------------HHHHHHH----------
Q 008664 197 ------G-VKDVR--------------------------------------------------DAVEDAR---------- 209 (558)
Q Consensus 197 ------~-~~~i~--------------------------------------------------~~~~~~~---------- 209 (558)
+ ...+. .++....
T Consensus 106 i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~ 185 (604)
T 3k1j_A 106 IKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLG 185 (604)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CC
T ss_pred EEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcc
Confidence 0 01111 1110000
Q ss_pred --------HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-----------------------EEEEeccCCCCCC
Q 008664 210 --------KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-----------------------IVFIGATTENPSF 258 (558)
Q Consensus 210 --------~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-----------------------iilI~att~n~~~ 258 (558)
........+++|||||++.+++..|+.|+++|+++. +.+|++|+.+...
T Consensus 186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 186 TPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp CCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred ccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 000011255799999999999999999999998643 4588888554445
Q ss_pred CCcHHhhcccc----eeeccC---CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh---CCC-------
Q 008664 259 HLITPLLSRCR----VLTLNP---LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN---CDG------- 321 (558)
Q Consensus 259 ~l~~aL~sR~~----~i~~~~---l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~---s~G------- 321 (558)
.++++|++||. .+.|++ ...+.+..+++.+........ ....++++++..|+++ +.|
T Consensus 266 ~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~ls~eAl~~Li~~~~r~~g~r~~l~~ 339 (604)
T 3k1j_A 266 KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDG------KIPHFTKEAVEEIVREAQKRAGRKGHLTL 339 (604)
T ss_dssp HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHC------SSCCBBHHHHHHHHHHHHHTTCSTTEEEC
T ss_pred hcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhcc------CcccCCHHHHHHHHHHHhhhhcccccccc
Confidence 78999999995 344443 345667777766655422211 3457899999999986 366
Q ss_pred CHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 322 DARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 322 d~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
++|.+.++++.+...+..+ + ...|+.+++.+++...
T Consensus 340 ~~R~l~~llr~A~~~A~~~-------------~-------~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 340 RLRDLGGIVRAAGDIAVKK-------------G-------KKYVEREDVIEAVKMA 375 (604)
T ss_dssp CHHHHHHHHHHHHHHHHHT-------------T-------CSSBCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhc-------------C-------cccccHHHHHHHHHhh
Confidence 6999999999988776542 2 4579999999998753
No 78
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.67 E-value=1.1e-15 Score=159.89 Aligned_cols=200 Identities=19% Similarity=0.199 Sum_probs=149.0
Q ss_pred CCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHHH
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDAR 209 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~~ 209 (558)
++.++|+...+ ..+...+.. ....+++|+|++|||||++|+.++.... ...+|+.++|.......+...+-...
T Consensus 136 ~~~~ig~s~~m---~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKM---KEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHH---HHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC
T ss_pred chhhhhccHHh---hHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCC
Confidence 45677877665 555544443 2236789999999999999999999875 34689999998776544433221110
Q ss_pred H-----------hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-------------EEEEeccCCCCC-----CCC
Q 008664 210 K-----------LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-------------IVFIGATTENPS-----FHL 260 (558)
Q Consensus 210 ~-----------~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-------------iilI~att~n~~-----~~l 260 (558)
. .......+++||||||+.++...|..|+++++++. +.+|++|+.+.. ..+
T Consensus 213 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 213 KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred CCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 0 00112356899999999999999999999998743 568888876542 356
Q ss_pred cHHhhcccc--eeeccCCCH--HHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q 008664 261 ITPLLSRCR--VLTLNPLKP--HDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDARVALNALEISAI 335 (558)
Q Consensus 261 ~~aL~sR~~--~i~~~~l~~--~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R~~~~~Le~a~~ 335 (558)
.+.|..|+. .+.++|+.+ +|+..++..++.++...+ +.....+++++++.|..+ |+||+|++.|++++++.
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~----~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKY----AKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVL 368 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHT----TCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHc----CCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 778888874 577889876 899999999988766554 334457999999999988 99999999999999998
Q ss_pred Hhcc
Q 008664 336 TAAV 339 (558)
Q Consensus 336 ~a~~ 339 (558)
.+..
T Consensus 369 ~~~~ 372 (387)
T 1ny5_A 369 FSEG 372 (387)
T ss_dssp HCCS
T ss_pred hCCC
Confidence 8753
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.67 E-value=1.4e-17 Score=186.74 Aligned_cols=149 Identities=27% Similarity=0.422 Sum_probs=113.0
Q ss_pred CCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc-
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT- 195 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~- 195 (558)
..+++++.|.++.+ +.|...+... ...++|||||||||||.+|+++|.+++ .+|+.++...
T Consensus 473 ~v~w~diggl~~~k---~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~f~~v~~~~l 547 (806)
T 3cf2_A 473 QVTWEDIGGLEDVK---RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp CCCSTTCCSCHHHH---HHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CEEEECCHHHH
T ss_pred CCCHHHhCCHHHHH---HHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--CceEEeccchh
Confidence 34678888887776 6666655432 136899999999999999999999999 9999887643
Q ss_pred ------ccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCHH--------------HHHHHHhhHhc----CcEEEEec
Q 008664 196 ------SGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNKS--------------QQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 196 ------~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~~--------------~~~~Ll~~le~----~~iilI~a 251 (558)
.+...++++|..++.. .++||||||||.+... ..+.||..|+. ..+++|++
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~-----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~a 622 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT-----CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC
T ss_pred hccccchHHHHHHHHHHHHHHc-----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 3677899999998764 7899999999988432 35678888875 45777777
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVD 290 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~ 290 (558)
| |....+++++++ || ..|.|+.|+.++..+|++..+.
T Consensus 623 T--N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 623 T--NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp ---CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred C--CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 7 666799999999 88 5889999999999998887653
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.64 E-value=4.4e-15 Score=156.23 Aligned_cols=144 Identities=20% Similarity=0.305 Sum_probs=101.3
Q ss_pred CceEEEEeCCccCCH------------HHHHHHHhhHhcC------------cEEEEecc---CCCCCCCCcHHhhcccc
Q 008664 217 KRTVLFVDEVHRFNK------------SQQDSFLPVIEDG------------SIVFIGAT---TENPSFHLITPLLSRCR 269 (558)
Q Consensus 217 ~~~il~IDEid~l~~------------~~~~~Ll~~le~~------------~iilI~at---t~n~~~~l~~aL~sR~~ 269 (558)
..+++++||||.+.. ..|+.||++||.. .+.||++. ..|+.. +.|+|++|+.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~R~~ 328 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQGRLP 328 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHTTCC
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhcccc
Confidence 356999999998853 2788999999863 35677654 235553 6689999997
Q ss_pred e-eeccCCCHHHHHHHHH---H-HHHhHhcccccccCCcccccChHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 008664 270 V-LTLNPLKPHDVEILLK---R-AVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN--------CDGDARVALNALEISAIT 336 (558)
Q Consensus 270 ~-i~~~~l~~~~i~~iL~---~-~l~~~~~~~~~~~~~~~~~i~~~al~~La~~--------s~Gd~R~~~~~Le~a~~~ 336 (558)
+ +.|++++.+++..|+. . .+.++...+. ..+..+.++++++..|++. -.+++|.+.+.++.++..
T Consensus 329 i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~--~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~ 406 (444)
T 1g41_A 329 IRVELTALSAADFERILTEPHASLTEQYKALMA--TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 406 (444)
T ss_dssp EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHH--TTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhc--ccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHH
Confidence 5 8999999999999994 2 2333222210 0235778999999999986 468999999999998865
Q ss_pred hcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhc
Q 008664 337 AAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCK 377 (558)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~ 377 (558)
..-+ ++..++ ....||.+.|++.++..
T Consensus 407 ~~~~--------~~~~~~------~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 407 ISFS--------ASDMNG------QTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHHH--------GGGCTT------CEEEECHHHHHHHHTTT
T ss_pred HHhh--------ccccCC------CeEEEeHHHHHHhcCcc
Confidence 4321 011001 14579999999988754
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=4.9e-15 Score=159.03 Aligned_cols=216 Identities=17% Similarity=0.242 Sum_probs=142.4
Q ss_pred CccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHH--HHHH---
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDA--VEDA--- 208 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~--~~~~--- 208 (558)
..++|+++.+ ..+..++..+ .++||+||||||||++|+++|+.+.....|..+++......++-.. ....
T Consensus 22 ~~ivGq~~~i---~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~ 96 (500)
T 3nbx_X 22 KGLYERSHAI---RLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE 96 (500)
T ss_dssp TTCSSCHHHH---HHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-------
T ss_pred hhhHHHHHHH---HHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhc
Confidence 3488999887 7777777666 6899999999999999999999986545666666643222222110 0000
Q ss_pred HHhh-hhcC---CceEEEEeCCccCCHHHHHHHHhhHhcCcE------------EEEeccCCCCC-CCCcHHhhcccc-e
Q 008664 209 RKLR-VKSN---KRTVLFVDEVHRFNKSQQDSFLPVIEDGSI------------VFIGATTENPS-FHLITPLLSRCR-V 270 (558)
Q Consensus 209 ~~~~-~~~~---~~~il~IDEid~l~~~~~~~Ll~~le~~~i------------ilI~att~n~~-~~l~~aL~sR~~-~ 270 (558)
.... ...+ ..+|||||||+++++..++.|+..|+++.+ ++|++|+..+. ..+.+++++||. .
T Consensus 97 g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~ 176 (500)
T 3nbx_X 97 GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIR 176 (500)
T ss_dssp ---CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEE
T ss_pred hhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHH
Confidence 0000 0011 345899999999999999999999987542 34666642221 234579999985 5
Q ss_pred eeccCCCH-HHHHHHHHHHHHhHhccccc------------ccCCcccccChHHHHHHHHhC----------CCCHHHHH
Q 008664 271 LTLNPLKP-HDVEILLKRAVDDVNNGLSK------------SVGGTRVEVNHDAIEFLCSNC----------DGDARVAL 327 (558)
Q Consensus 271 i~~~~l~~-~~i~~iL~~~l~~~~~~~~~------------~~~~~~~~i~~~al~~La~~s----------~Gd~R~~~ 327 (558)
+.+++++. ++...++............. ......+.+++++++++++.. +.+.|.++
T Consensus 177 i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~ 256 (500)
T 3nbx_X 177 LWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWK 256 (500)
T ss_dssp EECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHH
T ss_pred HHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHH
Confidence 78888887 66777776533110000000 000136789999999998764 55899999
Q ss_pred HHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHh
Q 008664 328 NALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQ 375 (558)
Q Consensus 328 ~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~ 375 (558)
.++..+...+..+ | ...|+.+|+. ++.
T Consensus 257 ~llr~A~A~A~l~-------------g-------r~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 257 KAIRLLQASAFFS-------------G-------RSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHHHHHHHHHT-------------T-------CSBCCGGGGG-GGG
T ss_pred HHHHHHHHHHhhc-------------C-------CccccchHHH-HHH
Confidence 9998887777652 4 5679999998 443
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.61 E-value=2e-14 Score=143.22 Aligned_cols=223 Identities=22% Similarity=0.266 Sum_probs=136.7
Q ss_pred CCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS 196 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~ 196 (558)
..+|+||.|.++.+ ..+...+.. ....+++|+||||||||||+++||..++ ..++.+++...
T Consensus 6 ~~~~~di~g~~~~~---~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~--~~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIR---EELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG--LNFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHH---HHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEEETTTT
T ss_pred CCCHHHhCCHHHHH---HHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--CCEEEEEcHHH
Confidence 45789999998886 666654421 1135699999999999999999999998 68888887543
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhcC---cEEEEeccCCC
Q 008664 197 -------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIEDG---SIVFIGATTEN 255 (558)
Q Consensus 197 -------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~~---~iilI~att~n 255 (558)
....++.++..+.. ..+.++|+||++.+.. ...+.++..|+.+ ..+++.++| |
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~t-n 154 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAAT-N 154 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEE-S
T ss_pred HhhhhhHHHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeec-C
Confidence 12345556655533 2678999999998632 1345566666542 344444444 4
Q ss_pred CCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCccccc-ChHHHHHHHHhC--CC-CHHHHHH
Q 008664 256 PSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEV-NHDAIEFLCSNC--DG-DARVALN 328 (558)
Q Consensus 256 ~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i-~~~al~~La~~s--~G-d~R~~~~ 328 (558)
....+++++++ || ..+.++.|+.++...|++..+... ....+ .+..++.|+..+ .| ....+.+
T Consensus 155 ~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 155 RPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG----------TKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp CGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT----------BTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred ChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc----------cCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 44578999998 77 588999999999999999876430 11122 223366777653 23 5556666
Q ss_pred HHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhhcccccc
Q 008664 329 ALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQCKHLAYD 382 (558)
Q Consensus 329 ~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~~~~~~d 382 (558)
+++.++..+..+. ...... .. ......|+.+|+.+++.+....+.
T Consensus 225 l~~~a~~~a~~~~-~~~~~~-~~-------~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 225 LVREASICALRQE-MARQKS-GN-------EKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHHHHHH-C-------------------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHH-Hhhccc-cc-------cccCCeecHHHHHHHHHHhcCCCC
Confidence 6666655442210 000000 00 011346999999999987654443
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.58 E-value=6.4e-16 Score=138.69 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=94.6
Q ss_pred ccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhh
Q 008664 135 DVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLR 212 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~ 212 (558)
+++|++..+ ..+.+.+.. ....+++|+||||||||++|+++++... +++.++|..........+++.
T Consensus 5 ~~iG~s~~~---~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~----- 73 (143)
T 3co5_A 5 DKLGNSAAI---QEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQK----- 73 (143)
T ss_dssp ---CCCHHH---HHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHH-----
T ss_pred CceeCCHHH---HHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHh-----
Confidence 578998887 666666653 3347899999999999999999998875 788888876544333333332
Q ss_pred hhcCCceEEEEeCCccCCHHHHHHHHhhHhcC---cEEEEeccCCCCCCC---CcHHhhcccc--eeeccCCC
Q 008664 213 VKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG---SIVFIGATTENPSFH---LITPLLSRCR--VLTLNPLK 277 (558)
Q Consensus 213 ~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~---~iilI~att~n~~~~---l~~aL~sR~~--~i~~~~l~ 277 (558)
..+++|||||+|.++.+.|..|+++++++ .+.+|++|+.++... +.+.|..|+. .+.++||.
T Consensus 74 ---a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 74 ---AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp ---TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCCC
T ss_pred ---CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCCC
Confidence 24579999999999999999999999874 488888887665432 5567777763 57777763
No 84
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.58 E-value=2.2e-14 Score=144.43 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=101.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~ 230 (558)
+..+||+||||||||++|+++|+.++ .+++.+++... ....++.++..+.... ....++||||||||.+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAAEII-RKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT--CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHH-TTSSCCCEEEECCC---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHH-hcCCCeEEEEechhhhc
Confidence 36899999999999999999999999 88888887543 2344666776664332 24478999999999876
Q ss_pred H-------------HHHHHHHhhHhc---------------CcEEEEeccCCCCCCCCcHHhhc--ccceeeccCCCHHH
Q 008664 231 K-------------SQQDSFLPVIED---------------GSIVFIGATTENPSFHLITPLLS--RCRVLTLNPLKPHD 280 (558)
Q Consensus 231 ~-------------~~~~~Ll~~le~---------------~~iilI~att~n~~~~l~~aL~s--R~~~i~~~~l~~~~ 280 (558)
. ..++.|+++++. ..+++|++| |....+++++++ |+..+.+ .|+.++
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~tt--N~~~~ld~al~R~~R~d~~i~-~P~~~~ 189 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTRED 189 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEEC--SSCCC--CHHHHHHHEEEEEE-CCCHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEec--CCcccCCHHHhCCCCCceeEe-CcCHHH
Confidence 5 245889999862 346777766 556689999986 6654333 349999
Q ss_pred HHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh-CCCCHH
Q 008664 281 VEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN-CDGDAR 324 (558)
Q Consensus 281 i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~-s~Gd~R 324 (558)
...|++..+.. . .++.+.+..+... ++.++.
T Consensus 190 r~~Il~~~~~~-----------~--~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRT-----------D--NVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGG-----------G--CCCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHhccC-----------C--CCCHHHHHHHhCCCCcccHH
Confidence 99999977643 2 3455556666555 555664
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=2.5e-14 Score=150.37 Aligned_cols=219 Identities=19% Similarity=0.160 Sum_probs=147.3
Q ss_pred CchhhcCCCCCCccccccccCCchHHHHHHH-Hc------CCCCeEEE--EcCCCchHHHHHHHHHHHhCC-------Cc
Q 008664 123 PLSERMRPVNINDVVGQDHLLSPNSLLRSAV-CS------NRLPSIIF--WGPPGTGKTTLAKAIVNSVAV-------SY 186 (558)
Q Consensus 123 ~l~~~~rp~~~~dviGq~~~i~~~~~l~~~i-~~------~~~~~~LL--~GppGtGKTtLa~~la~~l~~-------~~ 186 (558)
++...+.| ++++|++..+ ..+..++ .. ....+++| +||||+|||++++.+++.+.. ..
T Consensus 14 ~~~~~~~p---~~l~gR~~el---~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 87 (412)
T 1w5s_A 14 VFDENYIP---PELRVRRGEA---EALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTV 87 (412)
T ss_dssp GGSTTCCC---SSCSSSCHHH---HHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred hcCCccCC---CCCCChHHHH---HHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCce
Confidence 44445555 5689999887 7777766 32 24568899 999999999999999988742 35
Q ss_pred eEEEEecccc-cHHH-HHH------------------HHHHHHHhhhhcCCceEEEEeCCccCC------HHHHHHHHhh
Q 008664 187 KFVCLSAVTS-GVKD-VRD------------------AVEDARKLRVKSNKRTVLFVDEVHRFN------KSQQDSFLPV 240 (558)
Q Consensus 187 ~~i~l~~~~~-~~~~-i~~------------------~~~~~~~~~~~~~~~~il~IDEid~l~------~~~~~~Ll~~ 240 (558)
.++.+++... +... +.. ++..........+++.+|||||+|.+. .+.+..|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 88 KQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 167 (412)
T ss_dssp EEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHH
Confidence 6788886332 1111 111 111211111122467899999999985 3556666676
Q ss_pred Hh-----c--CcEEEEeccCCCC-CCCCc---HHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccC
Q 008664 241 IE-----D--GSIVFIGATTENP-SFHLI---TPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVN 308 (558)
Q Consensus 241 le-----~--~~iilI~att~n~-~~~l~---~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~ 308 (558)
++ . ..+.+|++++... ...+. +.+.+++ ..+.|+|++.+++.+++...+... .....++
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~---------~~~~~~~ 238 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG---------LRDTVWE 238 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH---------BCTTSCC
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc---------CCCCCCC
Confidence 65 2 5677777663221 11223 5555665 349999999999999998877641 1234578
Q ss_pred hHHHHHHHHhCC------CCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 309 HDAIEFLCSNCD------GDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 309 ~~al~~La~~s~------Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
++++..+++.++ |++|.++++++.+...+... + ...|+.+++..++..
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~-------------~-------~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAM-------------G-------RDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHT-------------T-------CSSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHc-------------C-------CCCCCHHHHHHHHHH
Confidence 999999999999 99999999999887655331 2 346888988877754
No 86
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=9.6e-16 Score=168.69 Aligned_cols=216 Identities=18% Similarity=0.183 Sum_probs=136.9
Q ss_pred CccccccccCCchHHHHHHHHcCCC-----------CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec----ccccH
Q 008664 134 NDVVGQDHLLSPNSLLRSAVCSNRL-----------PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA----VTSGV 198 (558)
Q Consensus 134 ~dviGq~~~i~~~~~l~~~i~~~~~-----------~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~----~~~~~ 198 (558)
..++|+++++ ..+..++..+.. .++||+||||||||++|+++|+.++ ..++.... .....
T Consensus 295 ~~I~G~e~vk---~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~--r~~~~~~~~~~~~~l~~ 369 (595)
T 3f9v_A 295 PSIYGHWELK---EALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP--RAVYTTGKGSTAAGLTA 369 (595)
T ss_dssp STTSCCHHHH---HHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS--CEECCCTTCSTTTTSEE
T ss_pred chhcChHHHH---HHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC--CceecCCCccccccccc
Confidence 4577887765 555444444421 1899999999999999999999986 33332211 11000
Q ss_pred HHHHHHHHHHH---HhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcE---------------EEEeccCCCCCC--
Q 008664 199 KDVRDAVEDAR---KLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSI---------------VFIGATTENPSF-- 258 (558)
Q Consensus 199 ~~i~~~~~~~~---~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~i---------------ilI~att~n~~~-- 258 (558)
..++..+.... ........++|+||||||.++++.++.|+++|+++.+ .+|++| |+..
T Consensus 370 ~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaat--Np~~G~ 447 (595)
T 3f9v_A 370 AVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG--NPKFGR 447 (595)
T ss_dssp ECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEE--CCTTCC
T ss_pred eeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEc--CCcCCc
Confidence 00000000000 0000111468999999999999999999999998654 366666 4433
Q ss_pred -----------CCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcc-----cc----c----ccC-CcccccChHHH
Q 008664 259 -----------HLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNG-----LS----K----SVG-GTRVEVNHDAI 312 (558)
Q Consensus 259 -----------~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~-----~~----~----~~~-~~~~~i~~~al 312 (558)
.++++|++|| .++.+.+++.++...++++++...... +. + .+. .....+++++.
T Consensus 448 ~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~ 527 (595)
T 3f9v_A 448 YISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAK 527 (595)
T ss_dssp SCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTH
T ss_pred cCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 7889999999 466666666655555555555431100 00 0 000 00226788888
Q ss_pred HHHHHh---------------CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 313 EFLCSN---------------CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 313 ~~La~~---------------s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
+.|.++ +++++|.+.++++.+...+..+ + ...|+.+|+.+++..
T Consensus 528 ~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~-------------~-------~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 528 NLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMA-------------L-------KAEVTREDAERAINI 586 (595)
T ss_dssp HHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTT-------------S-------SCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHh-------------C-------cCCCCHHHHHHHHHH
Confidence 888876 5789999999999998887653 3 467999999998763
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.55 E-value=9.5e-15 Score=131.29 Aligned_cols=131 Identities=18% Similarity=0.283 Sum_probs=95.1
Q ss_pred ccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccH-HHHHHHHHHHHH
Q 008664 135 DVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGV-KDVRDAVEDARK 210 (558)
Q Consensus 135 dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~-~~i~~~~~~~~~ 210 (558)
+++|++..+ ..+...+.. ....+++|+||||||||++|+++++... ...+|+ ++|..... ......++.+
T Consensus 2 ~iiG~s~~~---~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a-- 75 (145)
T 3n70_A 2 ELIGRSEWI---NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA-- 75 (145)
T ss_dssp --CCSSHHH---HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH--
T ss_pred CceeCCHHH---HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc--
Confidence 578888877 666666643 3347899999999999999999999873 236777 88765432 2233333332
Q ss_pred hhhhcCCceEEEEeCCccCCHHHHHHHHhhHhc--CcEEEEeccCCCCC-----CCCcHHhhcccc--eeeccCCC
Q 008664 211 LRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED--GSIVFIGATTENPS-----FHLITPLLSRCR--VLTLNPLK 277 (558)
Q Consensus 211 ~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~--~~iilI~att~n~~-----~~l~~aL~sR~~--~i~~~~l~ 277 (558)
.+++|||||||.++...|..|+.+|+. ..+.+|++|+.++. ..+.+.|..|+. .+.++||.
T Consensus 76 ------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 76 ------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCCC
T ss_pred ------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCCC
Confidence 457999999999999999999999976 45778888876542 356778888874 67788763
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.46 E-value=5.6e-16 Score=176.41 Aligned_cols=152 Identities=26% Similarity=0.399 Sum_probs=116.1
Q ss_pred cCCCCCCccccccccCCchHHHHHHHHcC-------------CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 128 MRPVNINDVVGQDHLLSPNSLLRSAVCSN-------------RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 128 ~rp~~~~dviGq~~~i~~~~~l~~~i~~~-------------~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
....++++++|.++.+ ..+..++... ...+++|+||||||||++|+++|+.++ ..++.+++.
T Consensus 471 ~~~v~~~di~gl~~vk---~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~ 545 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVK---RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP 545 (806)
T ss_dssp CCCCSSCSSSCCCCHH---HHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCS
T ss_pred Cccccccccccchhhh---hhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEech
Confidence 3455788999998886 7777666531 236799999999999999999999998 777777765
Q ss_pred cc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCC--------------HHHHHHHHhhHhc----CcEEEE
Q 008664 195 TS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFN--------------KSQQDSFLPVIED----GSIVFI 249 (558)
Q Consensus 195 ~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~--------------~~~~~~Ll~~le~----~~iilI 249 (558)
.. ....++.++..+... .++||||||||.+. ...++.||..|+. ..+++|
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHH-----CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred HhhhhhcCccHHHHHHHHHHHHhc-----CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 42 345678888887654 57899999999863 2345677777764 345666
Q ss_pred eccCCCCCCCCcHHhhc--ccc-eeeccCCCHHHHHHHHHHHHHh
Q 008664 250 GATTENPSFHLITPLLS--RCR-VLTLNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 250 ~att~n~~~~l~~aL~s--R~~-~i~~~~l~~~~i~~iL~~~l~~ 291 (558)
++| |....+++++++ ||. .+.|+.++.++...|++..+.+
T Consensus 621 ~tT--N~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 621 GAT--NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCC--BSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred Eec--CCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 666 666689999999 995 8899999999999999887643
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.45 E-value=6.3e-13 Score=151.27 Aligned_cols=175 Identities=21% Similarity=0.360 Sum_probs=129.4
Q ss_pred hcCCCCCCccccccccCCchHHHHHHHHc-------------CCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 127 RMRPVNINDVVGQDHLLSPNSLLRSAVCS-------------NRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 127 ~~rp~~~~dviGq~~~i~~~~~l~~~i~~-------------~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
...+.+|++|+|++..+ ..+..++.. ....+++|+||||||||++|++|+..++ ..++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~---~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQL---AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGG---GHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CEEEEEEH
T ss_pred ccCCCCHHHhCChHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CcEEEEEc
Confidence 45567899999999998 788777764 2236899999999999999999999998 88899987
Q ss_pred ccc-------cHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH-----------HHHHHHHhhHhc----CcEEEEec
Q 008664 194 VTS-------GVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-----------SQQDSFLPVIED----GSIVFIGA 251 (558)
Q Consensus 194 ~~~-------~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-----------~~~~~Ll~~le~----~~iilI~a 251 (558)
... ....++.++..+... .+.++||||+|.+.. ..++.|+.+++. ..+++|++
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~a 346 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKN-----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHH-----CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEE
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhc-----CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecc
Confidence 432 234566677766543 678999999987742 356678888874 45777777
Q ss_pred cCCCCCCCCcHHhhc--cc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHH
Q 008664 252 TTENPSFHLITPLLS--RC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARV 325 (558)
Q Consensus 252 tt~n~~~~l~~aL~s--R~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~ 325 (558)
| |+...+++++.+ || ..+.+..++.++...+++..+.. ..+ ..+..+..++..+.|....
T Consensus 347 t--n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~-----------~~l-~~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 347 T--NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-----------MKL-ADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp C--SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT-----------SCC-CTTCCTHHHHHSCSSCCHH
T ss_pred c--CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc-----------CCC-cccchhHHHHHhhcCcchH
Confidence 7 555678888887 77 57889999999999999876543 111 1223356777777765433
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.32 E-value=1.7e-11 Score=125.42 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=120.0
Q ss_pred CCCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-------cHHH----
Q 008664 132 NINDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-------GVKD---- 200 (558)
Q Consensus 132 ~~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-------~~~~---- 200 (558)
.-+.++|++..+ ..+..++..+ +.++|+||+|+|||+|++.+++..+ .+.+++... ....
T Consensus 10 ~~~~~~gR~~el---~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEES---RKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHH---HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHH---HHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC----cEEEEeecccccccCCCHHHHHHH
Confidence 335689999888 8888888775 7899999999999999999999864 344443221 1111
Q ss_pred --------------------------------HHHHHHHHHHhhhhcCCceEEEEeCCccCCH-------HHHHHHHhhH
Q 008664 201 --------------------------------VRDAVEDARKLRVKSNKRTVLFVDEVHRFNK-------SQQDSFLPVI 241 (558)
Q Consensus 201 --------------------------------i~~~~~~~~~~~~~~~~~~il~IDEid~l~~-------~~~~~Ll~~l 241 (558)
+..++....... ....+.+|||||+|.+.. .....|...+
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLG-EELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHH-HHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHH-hccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 111222111111 011378999999999864 4455555555
Q ss_pred hc-CcEEEEeccCCCCC-------CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHH
Q 008664 242 ED-GSIVFIGATTENPS-------FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAI 312 (558)
Q Consensus 242 e~-~~iilI~att~n~~-------~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al 312 (558)
+. ..+.+|++++.... ......+..|. ..+.+.|++.++..+++...+.. .+..++++.+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~-----------~~~~~~~~~~ 228 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE-----------VNLDVPENEI 228 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT-----------TTCCCCHHHH
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH-----------cCCCCCHHHH
Confidence 54 45666655432210 11222344454 58999999999999999887655 4566888999
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 008664 313 EFLCSNCDGDARVALNALEI 332 (558)
Q Consensus 313 ~~La~~s~Gd~R~~~~~Le~ 332 (558)
..+++.++|++..+..+...
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 99999999999876665544
No 91
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.25 E-value=9.7e-11 Score=122.51 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=128.4
Q ss_pred cccccccCCchHHHHHHHHcCC-----CCeEEEEcCCCchHHHHHHHH-HHHhCCCceEEEEecccccHHHHHHHHH---
Q 008664 136 VVGQDHLLSPNSLLRSAVCSNR-----LPSIIFWGPPGTGKTTLAKAI-VNSVAVSYKFVCLSAVTSGVKDVRDAVE--- 206 (558)
Q Consensus 136 viGq~~~i~~~~~l~~~i~~~~-----~~~~LL~GppGtGKTtLa~~l-a~~l~~~~~~i~l~~~~~~~~~i~~~~~--- 206 (558)
|+||+.++ ..+.-++..+. --++||.|+||| ||.+|+.+ ++.+. ...+ ..........+-..+.
T Consensus 215 I~G~e~vK---~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p--R~~f-t~g~~ss~~gLt~s~r~~t 287 (506)
T 3f8t_A 215 LPGAEEVG---KMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP--RGVY-VDLRRTELTDLTAVLKEDR 287 (506)
T ss_dssp STTCHHHH---HHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS--SEEE-EEGGGCCHHHHSEEEEESS
T ss_pred cCCCHHHH---HHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC--CeEE-ecCCCCCccCceEEEEcCC
Confidence 78888764 55555555542 128999999999 99999999 77664 2222 1211111111100000
Q ss_pred H--HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCc-----------EEEEeccCCCCC-----------CCCcH
Q 008664 207 D--ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGS-----------IVFIGATTENPS-----------FHLIT 262 (558)
Q Consensus 207 ~--~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~-----------iilI~att~n~~-----------~~l~~ 262 (558)
. .+........++++|||||+.+++..|..|+..||+++ +.+|+++ ||. ..+++
T Consensus 288 G~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~--NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 288 GWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAI--NPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp SEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE--CCCC--CCSCGGGGCCSCH
T ss_pred CcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe--CcccccCCCCCccccCCCh
Confidence 0 00001122357899999999999999999999999865 4466666 443 27889
Q ss_pred Hhhcccc-eee-ccC-------------CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHh---------
Q 008664 263 PLLSRCR-VLT-LNP-------------LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSN--------- 318 (558)
Q Consensus 263 aL~sR~~-~i~-~~~-------------l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~--------- 318 (558)
++++||. ++. +.. ++.+++++++...-.. ...+.+++++.++|.++
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~----------~~~p~ls~ea~~yI~~~y~~tR~~~~ 435 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIRE----------HPAPELTEEARKRLEHWYETRREEVE 435 (506)
T ss_dssp HHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHH----------CSCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhc----------CCCceeCHHHHHHHHHHHHHHhcCcc
Confidence 9999994 332 222 3334444444432211 13677899888887753
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhcccCCccchhhhhccccCCCCCCCccccCHHHHHHHHhh
Q 008664 319 ---------CDGDARVALNALEISAITAAVRVPVKEVKEVEQEDESDGCSPYVALVTLDDAKEAFQC 376 (558)
Q Consensus 319 ---------s~Gd~R~~~~~Le~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~It~e~v~~~l~~ 376 (558)
.+-.+|.++.++..+.+.|..+ + ...|+.+|+++++.-
T Consensus 436 ~~~~~~~~~~giSpR~leaLiRlA~A~A~L~-------------g-------R~~V~~eDV~~Ai~L 482 (506)
T 3f8t_A 436 ERLGMGLPTLPVTRRQLESVERLAKAHARMR-------------L-------SDDVEPEDVDIAAEL 482 (506)
T ss_dssp HHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT-------------T-------CSEECHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHc-------------C-------cCCCCHHHHHHHHHH
Confidence 1347899999999888887763 4 668999999998763
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=9.8e-11 Score=119.95 Aligned_cols=175 Identities=17% Similarity=0.263 Sum_probs=113.2
Q ss_pred CCccccccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc------cHHHH-----
Q 008664 133 INDVVGQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS------GVKDV----- 201 (558)
Q Consensus 133 ~~dviGq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~------~~~~i----- 201 (558)
.+.++|++..+ ..+.. +.. +.++|+||+|+|||+|++.+++... ..++.+++... ....+
T Consensus 12 ~~~~~gR~~el---~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEI---EKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--LPYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHH---HHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--CCEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHH---HHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--CCEEEEEchhhccccCCCHHHHHHHHH
Confidence 35688998877 77777 554 6899999999999999999999987 44556665421 11111
Q ss_pred ------------------------------------------HHHHHHHHHhhhhcC-CceEEEEeCCccCCH----HHH
Q 008664 202 ------------------------------------------RDAVEDARKLRVKSN-KRTVLFVDEVHRFNK----SQQ 234 (558)
Q Consensus 202 ------------------------------------------~~~~~~~~~~~~~~~-~~~il~IDEid~l~~----~~~ 234 (558)
..++.... ... .+.+|||||+|.+.. +..
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFE----QASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHH----HTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHH----hcCCCCeEEEEECHHHhhccCchhHH
Confidence 11111111 111 378999999999854 334
Q ss_pred HHHHhhHhc-CcEEEEeccCCCCC-------CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCccc
Q 008664 235 DSFLPVIED-GSIVFIGATTENPS-------FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRV 305 (558)
Q Consensus 235 ~~Ll~~le~-~~iilI~att~n~~-------~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~ 305 (558)
..|...++. ..+.+|++++.... ......+..|+ ..+.+.|++.++..+++...+.. .+.
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~-----------~~~ 227 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE-----------ADI 227 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH-----------HTC
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH-----------cCC
Confidence 445445554 35666665543210 11222344565 68999999999999999987654 233
Q ss_pred ccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 306 EVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 306 ~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
..++. ..+++.++|++..+..+...+
T Consensus 228 ~~~~~--~~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 228 DFKDY--EVVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp CCCCH--HHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCcH--HHHHHHhCCCHHHHHHHHHHH
Confidence 34433 788999999999877665543
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=1.1e-10 Score=108.39 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred hhhcCCCCCCccccc----cccCCchHHHHHHHHcCC---CCeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEeccc
Q 008664 125 SERMRPVNINDVVGQ----DHLLSPNSLLRSAVCSNR---LPSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVT 195 (558)
Q Consensus 125 ~~~~rp~~~~dviGq----~~~i~~~~~l~~~i~~~~---~~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~ 195 (558)
+++|++.+|+++++. .+++ ..+..++..-. ..+++|+||||+|||||+++++..+. ....++.++...
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRAL---LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHH---HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred CchhhhCccccccCCCHHHHHHH---HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 368999999999863 3333 55555554432 36899999999999999999999873 113333333211
Q ss_pred ccHHHHHHHHHHHH--HhhhhcCCceEEEEeCCc--cCCHHHHHHHHhhHhc---CcEEEEeccCC
Q 008664 196 SGVKDVRDAVEDAR--KLRVKSNKRTVLFVDEVH--RFNKSQQDSFLPVIED---GSIVFIGATTE 254 (558)
Q Consensus 196 ~~~~~i~~~~~~~~--~~~~~~~~~~il~IDEid--~l~~~~~~~Ll~~le~---~~iilI~att~ 254 (558)
. ...+...+.... .......++.+|||||++ .++...++.|..+++. ....+|++|+.
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 L-IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp H-HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred H-HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 111111111100 000112267899999998 5677777788777754 23455555543
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.01 E-value=8.8e-10 Score=137.28 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=98.5
Q ss_pred HHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHh----------hhhcCC
Q 008664 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKL----------RVKSNK 217 (558)
Q Consensus 149 l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~----------~~~~~~ 217 (558)
+..++..+ .++||+||||||||++|+.+..... ...++.++.+.. +...+...++..... +...++
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~-~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk 1336 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSS-LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIK 1336 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCS-SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSS
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCC-CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCc
Confidence 34455555 6899999999999999955554442 266777776543 344555555543111 001345
Q ss_pred ceEEEEeCCccCCH------HHHHHHHhhHhcCc--------------EEEEeccCCCCC-----CCCcHHhhcccceee
Q 008664 218 RTVLFVDEVHRFNK------SQQDSFLPVIEDGS--------------IVFIGATTENPS-----FHLITPLLSRCRVLT 272 (558)
Q Consensus 218 ~~il~IDEid~l~~------~~~~~Ll~~le~~~--------------iilI~att~n~~-----~~l~~aL~sR~~~i~ 272 (558)
+.||||||++.... ...+.|.+++|.+. +.+|+|| ||. +.++++|+|||.++.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~--Npp~~gGR~~l~~rllRrf~vi~ 1414 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGAC--NPPTDPGRIPMSERFTRHAAILY 1414 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEE--CCTTSTTCCCCCHHHHTTEEEEE
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEec--CCCccCCCccCChhhhheeeEEE
Confidence 67999999886543 36778888887632 6788888 554 579999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 008664 273 LNPLKPHDVEILLKRAVDD 291 (558)
Q Consensus 273 ~~~l~~~~i~~iL~~~l~~ 291 (558)
++.++.+++..|+..++..
T Consensus 1415 i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998865
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.97 E-value=1.4e-09 Score=97.80 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
..+..++..-....++|+||+|+|||||+++++..+.. ....+.++....... . ...+..+|+|||
T Consensus 25 ~~~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~---~~~~~~lLilDE 91 (149)
T 2kjq_A 25 AELVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------D---AAFEAEYLAVDQ 91 (149)
T ss_dssp HHHHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------G---GGGGCSEEEEES
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------H---HHhCCCEEEEeC
Confidence 34444444334468999999999999999999998731 144666766544322 0 112568999999
Q ss_pred CccCCHHHHHHHHhhHhc----CcEEEEeccCCCCC-CCCcHHhhcccc
Q 008664 226 VHRFNKSQQDSFLPVIED----GSIVFIGATTENPS-FHLITPLLSRCR 269 (558)
Q Consensus 226 id~l~~~~~~~Ll~~le~----~~iilI~att~n~~-~~l~~aL~sR~~ 269 (558)
++.+....++.|+.+++. +..++|.+++.++. ....+.|.||+.
T Consensus 92 ~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 92 VEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 999987778888887754 44324444543332 222289999984
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.86 E-value=1.7e-09 Score=101.96 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=71.3
Q ss_pred chhhcCCCCCCccccccccC-CchHHHHHHHHcCC----CCeEEEEcCCCchHHHHHHHHHHHhCC-CceEEEEeccccc
Q 008664 124 LSERMRPVNINDVVGQDHLL-SPNSLLRSAVCSNR----LPSIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCLSAVTSG 197 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i-~~~~~l~~~i~~~~----~~~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l~~~~~~ 197 (558)
+..++++.+|+++++..... .....+..++.... ..+++|+||||||||++++++++.+.. ...++.+++....
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 44677888999999765211 01145666666542 278999999999999999999998842 2556666553211
Q ss_pred HHHHH---------HHHHHHHHhhhhcCCceEEEEeCCccCCHH--HHHHHH-hhHhc---CcEEEEeccC
Q 008664 198 VKDVR---------DAVEDARKLRVKSNKRTVLFVDEVHRFNKS--QQDSFL-PVIED---GSIVFIGATT 253 (558)
Q Consensus 198 ~~~i~---------~~~~~~~~~~~~~~~~~il~IDEid~l~~~--~~~~Ll-~~le~---~~iilI~att 253 (558)
..+. .++... ....+|||||++..... .+..|+ .+++. ....+|++|+
T Consensus 95 -~~~~~~~~~~~~~~~~~~~-------~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 95 -RELKHSLQDQTMNEKLDYI-------KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp -HHHHHC---CCCHHHHHHH-------HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred -HHHHHHhccchHHHHHHHh-------cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 1111 111111 13459999999775433 344344 35543 3344555554
No 97
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.80 E-value=3.8e-09 Score=76.50 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=35.9
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
+++|.+|||..+.+++||.++|+ +++||+||||+|.-+
T Consensus 23 V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 23 VETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 67999999999999999999998 889999999999866
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.77 E-value=2.3e-08 Score=97.79 Aligned_cols=126 Identities=20% Similarity=0.296 Sum_probs=83.0
Q ss_pred HHHHHHHHcC-C-CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008664 147 SLLRSAVCSN-R-LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVD 224 (558)
Q Consensus 147 ~~l~~~i~~~-~-~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~ID 224 (558)
..+..|+... . .++++|+||||||||++|.+||+.+. . +-.++...... .......+.|+++|
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~--l-~G~vn~~~~~f------------~l~~~~~k~i~l~E 155 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP--F-YGCVNWTNENF------------PFNDCVDKMVIWWE 155 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS--C-EEECCTTCSSC------------TTGGGSSCSEEEEC
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc--c-cceeecccccc------------ccccccccEEEEec
Confidence 5567777654 2 36899999999999999999999865 2 22223321100 00011244566667
Q ss_pred CCccCCHHHHHHHHhhHhcC---------------cEEEEeccCCCCC---------CCCcHHhhcccceeecc------
Q 008664 225 EVHRFNKSQQDSFLPVIEDG---------------SIVFIGATTENPS---------FHLITPLLSRCRVLTLN------ 274 (558)
Q Consensus 225 Eid~l~~~~~~~Ll~~le~~---------------~iilI~att~n~~---------~~l~~aL~sR~~~i~~~------ 274 (558)
|.... .+.++.+..+++.+ ...+|.+|+.+.. ....++|.|||.+|.|.
T Consensus 156 e~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~ 234 (267)
T 1u0j_A 156 EGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHD 234 (267)
T ss_dssp SCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTT
T ss_pred cccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcc
Confidence 66544 45666777777621 2345666654432 25668999999999998
Q ss_pred --CCCHHHHHHHHHHH
Q 008664 275 --PLKPHDVEILLKRA 288 (558)
Q Consensus 275 --~l~~~~i~~iL~~~ 288 (558)
+++.+++...+.-.
T Consensus 235 ~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 235 FGKVTKQEVKDFFRWA 250 (267)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 89999999999843
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.75 E-value=1.6e-08 Score=107.92 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=80.1
Q ss_pred CCCCCCCchhhcCCCCCCccc-cccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCC-c-eEEEEec
Q 008664 117 LHVPHAPLSERMRPVNINDVV-GQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVS-Y-KFVCLSA 193 (558)
Q Consensus 117 ~~~~~~~l~~~~rp~~~~dvi-Gq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~-~-~~i~l~~ 193 (558)
......||.++|||.+|+++- +|.+++ ..+..++..+. ++++|.|+||||||+++..++..+... . .++.+..
T Consensus 7 ~~~~~~~~~~~~~p~~~~~Ln~~Q~~av---~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 7 HHHHSSGLVPRGSHMTFDDLTEGQKNAF---NIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp --------------CCSSCCCHHHHHHH---HHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCccCCCccccCCCccccCCHHHHHHH---HHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 455678999999999999987 677776 67777776654 489999999999999999999887421 2 3444433
Q ss_pred ccccHHHHHHHH-------HHHHHhh---------------hhcCCceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEe
Q 008664 194 VTSGVKDVRDAV-------EDARKLR---------------VKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIG 250 (558)
Q Consensus 194 ~~~~~~~i~~~~-------~~~~~~~---------------~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~ 250 (558)
+......+++.+ ....... .......+|||||++.++..++..|+..+.. ..++++|
T Consensus 83 T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 83 THAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp SHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred cHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEEC
Confidence 333333333221 1111000 0112467999999999999999999998874 5577777
Q ss_pred ccCC
Q 008664 251 ATTE 254 (558)
Q Consensus 251 att~ 254 (558)
-...
T Consensus 163 D~~Q 166 (459)
T 3upu_A 163 DNKQ 166 (459)
T ss_dssp CTTS
T ss_pred CHHH
Confidence 5543
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.69 E-value=3.3e-08 Score=92.58 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=70.5
Q ss_pred HHHHHHHHcC-CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeC
Q 008664 147 SLLRSAVCSN-RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDE 225 (558)
Q Consensus 147 ~~l~~~i~~~-~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDE 225 (558)
..+..++..- +.++++|+||||||||++|.++++.+. ..++.+....... . . .......|++|||
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~--g~i~~fans~s~f---------~--l-~~l~~~kIiiLDE 111 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ--GAVISFVNSTSHF---------W--L-EPLTDTKVAMLDD 111 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT--CEECCCCCSSSCG---------G--G-GGGTTCSSEEEEE
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC--CCeeeEEeccchh---------h--h-cccCCCCEEEEEC
Confidence 6677777642 225799999999999999999999987 4443322111110 0 0 0112456999999
Q ss_pred CccCCHHH-HHHHHhhHhcCc---------------EEEEeccCCCCC-CCCcHHhhcccceeecc
Q 008664 226 VHRFNKSQ-QDSFLPVIEDGS---------------IVFIGATTENPS-FHLITPLLSRCRVLTLN 274 (558)
Q Consensus 226 id~l~~~~-~~~Ll~~le~~~---------------iilI~att~n~~-~~l~~aL~sR~~~i~~~ 274 (558)
++.-.... ...+..+++... ..+|.+|+.+.. ....+.|.||+.++.|+
T Consensus 112 ad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~ 177 (212)
T 1tue_A 112 ATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP 177 (212)
T ss_dssp ECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECC
T ss_pred CCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcC
Confidence 98533222 345666666531 346666644332 23347899999888877
No 101
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.68 E-value=3.7e-08 Score=74.30 Aligned_cols=40 Identities=45% Similarity=0.674 Sum_probs=37.8
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
-|+||++|||+.+.|++||.++|+.+.+.|++||++|...
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 3789999999999999999999999999999999999876
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.64 E-value=8e-09 Score=104.37 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=68.8
Q ss_pred chhhcCCCCCCccccccccC-CchHHHHHHHHcC---CCCeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEeccccc
Q 008664 124 LSERMRPVNINDVVGQDHLL-SPNSLLRSAVCSN---RLPSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVTSG 197 (558)
Q Consensus 124 l~~~~rp~~~~dviGq~~~i-~~~~~l~~~i~~~---~~~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~~~ 197 (558)
+...+++.+|+++++..... .....+..++... ...+++|+||||||||+||+++++.+. ....++.+++...
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l- 192 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF- 192 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH-
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH-
Confidence 34566778999998643110 0114556677653 247899999999999999999998764 2245555554311
Q ss_pred HHHHHHHHHH--HHHhhhhcCCceEEEEeCCccC--CHHHHHHHHh-hHhc---CcEEEEeccC
Q 008664 198 VKDVRDAVED--ARKLRVKSNKRTVLFVDEVHRF--NKSQQDSFLP-VIED---GSIVFIGATT 253 (558)
Q Consensus 198 ~~~i~~~~~~--~~~~~~~~~~~~il~IDEid~l--~~~~~~~Ll~-~le~---~~iilI~att 253 (558)
...+...+.. ............+|||||++.. +...++.|+. +++. ....+|++|+
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN 256 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSN 256 (308)
T ss_dssp HHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 1111100000 0000001124579999999654 4344443433 5543 2334555553
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.61 E-value=7.8e-07 Score=111.25 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=95.7
Q ss_pred HHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHhhhhcCCceEEEEeCCc
Q 008664 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVH 227 (558)
Q Consensus 149 l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~il~IDEid 227 (558)
+..++..+ .+.++.||+|||||++++.+|+.++ ..++.++|... ...++..++..+.. .+.++++||++
T Consensus 638 l~~Al~~~--~~~~l~GpaGtGKTe~vk~LA~~lg--~~~v~~nc~e~ld~~~lg~~~~g~~~------~Gaw~~~DE~n 707 (2695)
T 4akg_A 638 LTDSLHQK--YGGCFFGPAGTGKTETVKAFGQNLG--RVVVVFNCDDSFDYQVLSRLLVGITQ------IGAWGCFDEFN 707 (2695)
T ss_dssp HHHHHHTT--CEEEEECCTTSCHHHHHHHHHHTTT--CCCEEEETTSSCCHHHHHHHHHHHHH------HTCEEEEETTT
T ss_pred HHHHHHhC--CCCcccCCCCCCcHHHHHHHHHHhC--CcEEEEECCCCCChhHhhHHHHHHHh------cCCEeeehhhh
Confidence 33444433 5789999999999999999999999 88999999765 66777777776654 35799999999
Q ss_pred cCCHHHHHHH-------HhhHhcCc---------------EEEEeccCCCC----CCCCcHHhhcccceeeccCCCHHHH
Q 008664 228 RFNKSQQDSF-------LPVIEDGS---------------IVFIGATTENP----SFHLITPLLSRCRVLTLNPLKPHDV 281 (558)
Q Consensus 228 ~l~~~~~~~L-------l~~le~~~---------------iilI~att~n~----~~~l~~aL~sR~~~i~~~~l~~~~i 281 (558)
++..+.+..+ +..+.++. +.++++. || ...++++|++||+.+.+..|+.+.+
T Consensus 708 r~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~--NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 708 RLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITL--NPGYNGRSELPENLKKSFREFSMKSPQSGTI 785 (2695)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEE--CCCSSSSCCCCHHHHTTEEEEECCCCCHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEe--CCCccCcccccHHHHhheEEEEeeCCCHHHH
Confidence 9999887766 33332211 2233333 43 3578999999999999999999888
Q ss_pred HHHHHH
Q 008664 282 EILLKR 287 (558)
Q Consensus 282 ~~iL~~ 287 (558)
.+++..
T Consensus 786 ~ei~l~ 791 (2695)
T 4akg_A 786 AEMILQ 791 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.60 E-value=4.3e-07 Score=114.13 Aligned_cols=180 Identities=15% Similarity=0.209 Sum_probs=115.4
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHhh----------hh-c
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLR----------VK-S 215 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~~----------~~-~ 215 (558)
.+..++..+ .++||+||||||||.++..+...+. +..++.++.+.. ....+...++...... .. .
T Consensus 1296 ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~-~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A 1296 VLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFP-DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp HHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCT-TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred HHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCC-CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcC
Confidence 344455554 6799999999999988766555442 266777777654 3444555554321100 01 2
Q ss_pred CCceEEEEeCCccCCHH------HHHHHHhhHhcCc--------------EEEEeccCCC---CCCCCcHHhhcccceee
Q 008664 216 NKRTVLFVDEVHRFNKS------QQDSFLPVIEDGS--------------IVFIGATTEN---PSFHLITPLLSRCRVLT 272 (558)
Q Consensus 216 ~~~~il~IDEid~l~~~------~~~~Ll~~le~~~--------------iilI~att~n---~~~~l~~aL~sR~~~i~ 272 (558)
++..|+||||++.-..+ ..+.|.++++.+. +.+|+|++.. ....++++|.+||.++.
T Consensus 1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence 45579999999976543 6778888887532 4577776321 12578999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhHhcccccccCCccc-ccChHHHHHHHH---------------hCCCCHHHHHHHHHHHHHH
Q 008664 273 LNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRV-EVNHDAIEFLCS---------------NCDGDARVALNALEISAIT 336 (558)
Q Consensus 273 ~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~-~i~~~al~~La~---------------~s~Gd~R~~~~~Le~a~~~ 336 (558)
++.++.+++..|...++....... ..+ .+.+...+...+ +.--|+|.+.++++-++..
T Consensus 1453 i~~ps~esL~~If~til~~~l~~~------p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRALMKLL------PNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSC------GGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhC------hHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 999999999999887766532211 111 112222222222 1234999999998887654
No 105
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.59 E-value=9.7e-08 Score=71.77 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=35.7
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
|++|++|||+.+.+++||.++++ ++++|++|||++...
T Consensus 13 I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 13 LKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 68999999999999999999998 799999999999766
No 106
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.48 E-value=1.2e-07 Score=71.62 Aligned_cols=39 Identities=49% Similarity=0.874 Sum_probs=36.7
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++||++|||+...|++||.+++++++++|++|||+|...
T Consensus 23 i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 23 LDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 789999999999999999999998999999999998754
No 107
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.47 E-value=1.5e-07 Score=71.07 Aligned_cols=40 Identities=38% Similarity=0.728 Sum_probs=37.1
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
-|+||++|||+...|++||.++|+.++++|++||++|...
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 3789999999999999999999877899999999999876
No 108
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=73.48 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=37.1
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
|+||++|||+...|++||.++|+.++++|++|||+|...
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 13 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 689999999999999999999998899999999999876
No 109
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.45 E-value=1.8e-07 Score=64.85 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=33.6
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhc
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHK 39 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~ 39 (558)
+++|.+|||+.+.+++||.++++ +.++|++||+++.
T Consensus 8 i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 8 VEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTCC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcCC
Confidence 68999999999999999999987 8999999999873
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.43 E-value=1.1e-06 Score=81.10 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCceEEEEeCCc---cCCHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcc--cceeeccCCCHHHHHHHHH
Q 008664 216 NKRTVLFVDEVH---RFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSR--CRVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 216 ~~~~il~IDEid---~l~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR--~~~i~~~~l~~~~i~~iL~ 286 (558)
.++.++++||++ .++...++.+...+++....+|+++.......+...+.+| +.++.+.+.+.+++..-+.
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 477899999964 5677888899999988555344444211223455677777 7788888888766655443
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.41 E-value=1.4e-07 Score=87.73 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=64.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh-CCCceEEEEecccc---c----------------HHHHHHHHHHHHHhhhhcCCce
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVCLSAVTS---G----------------VKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~l~~~~~---~----------------~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
..+++||+|+||||++..++..+ .....++.+..... + .....++++. ......
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~------~~~~~d 78 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY------IEEDTR 78 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG------CCTTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH------hcCCCC
Confidence 57899999999999986665543 22233333321100 0 0001111111 112568
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCC---CCCCCcHHhhcccc-eeecc
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTEN---PSFHLITPLLSRCR-VLTLN 274 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n---~~~~l~~aL~sR~~-~i~~~ 274 (558)
+|||||++.++++..+.|..+.+.+..+++...+.+ +.+...+.|++++. +..+.
T Consensus 79 vviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 79 GVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred EEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 999999999988888888888887655544333334 55566678888774 43443
No 112
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.40 E-value=2e-07 Score=65.63 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=35.8
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
|++|++|||+.+++.+||.++|++.++.|++||..-.-+
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999865443
No 113
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.39 E-value=2.6e-07 Score=73.68 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=36.9
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++||++|||+...|++||.++++.++++|++|||+|...
T Consensus 33 v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 33 VAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 679999999999999999999988999999999999876
No 114
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.39 E-value=2.2e-07 Score=66.29 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=34.5
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKS 40 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~ 40 (558)
+++|++|||+.+.+++||.++++ +.++|++||+++.|
T Consensus 12 i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~gip 48 (49)
T 1ify_A 12 LTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIP 48 (49)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCC
Confidence 68999999999999999999998 78999999999754
No 115
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.38 E-value=3.6e-07 Score=66.26 Aligned_cols=39 Identities=46% Similarity=0.564 Sum_probs=35.6
Q ss_pred hhHHHHhcCC-CHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGF-PDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~-~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
.|++|.+||| +++.+++||.+++| ++++|++||+++.++
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~~s 53 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQLS 53 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcCCC
Confidence 3789999999 99999999999999 899999999998653
No 116
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2e-07 Score=65.96 Aligned_cols=34 Identities=47% Similarity=0.721 Sum_probs=32.1
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhh
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSH 38 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~ 38 (558)
++||++|||+.+.+++||.++| ++++|++||++|
T Consensus 13 v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h 46 (47)
T 2ekk_A 13 LQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTC
T ss_pred HHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcC
Confidence 6899999999999999999995 699999999987
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.31 E-value=8.1e-06 Score=89.60 Aligned_cols=179 Identities=16% Similarity=0.186 Sum_probs=100.2
Q ss_pred CCCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHh-------CCCceEEEEeccccc--H
Q 008664 130 PVNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSV-------AVSYKFVCLSAVTSG--V 198 (558)
Q Consensus 130 p~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l-------~~~~~~i~l~~~~~~--~ 198 (558)
|.....++|++..+ ..+..++.. +..+.+.|+||+|+|||+||..+++.. ....-++.+...+.. .
T Consensus 120 P~~~~~~vGR~~~l---~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 120 PQRPVVFVTRKKLV---NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLL 196 (591)
T ss_dssp CCCCSSCCCCHHHH---HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHH
T ss_pred CCCCCeecccHHHH---HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHH
Confidence 34445689999888 888888863 344679999999999999999987432 111333444332110 1
Q ss_pred HHHHH---------------------HHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCC
Q 008664 199 KDVRD---------------------AVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPS 257 (558)
Q Consensus 199 ~~i~~---------------------~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~ 257 (558)
..+.. +............++.+||||+++.. . .+..+..+. .+|.+| .+..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~----~l~~l~~~~-~ilvTs-R~~~ 268 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W----VLKAFDSQC-QILLTT-RDKS 268 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H----HHHTTCSSC-EEEEEE-SCGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H----HHHHhcCCC-eEEEEC-CCcH
Confidence 11111 11111111111125689999999852 2 223333333 333333 3321
Q ss_pred CCCcHHhhccc-ceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHHHHH
Q 008664 258 FHLITPLLSRC-RVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNALEIS 333 (558)
Q Consensus 258 ~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~Le~a 333 (558)
+........ .+..+.+++.++..+++...+.. . ..-.++....|++.++|.+-.+.-+...+
T Consensus 269 --~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~-----------~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 269 --VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----------K-KADLPEQAHSIIKECKGSPLVVSLIGALL 331 (591)
T ss_dssp --GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTS-----------C-GGGSCTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCC-----------C-cccccHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 000000111 22223589999999999876532 1 11224678899999999997766554433
No 118
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=5.8e-07 Score=67.77 Aligned_cols=38 Identities=39% Similarity=0.654 Sum_probs=35.7
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
|+||++|||+...|++||.++++ ++++|++||++|...
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d 50 (63)
T 2dak_A 13 VTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 78999999999999999999998 699999999999876
No 119
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.26 E-value=8.2e-07 Score=64.08 Aligned_cols=36 Identities=44% Similarity=0.594 Sum_probs=33.6
Q ss_pred hhHHHHhcCC-CHHHHHHHHHHhCCccHHHHHHHHHhh
Q 008664 2 EMEQLLSMGF-PDELAAEALAATGGKSTLKATEWILSH 38 (558)
Q Consensus 2 ~~~~~~~~g~-~~~~~~~al~~~g~~~~~~~~~w~~~~ 38 (558)
.|++|.+||| +++.+.+||.+++| ++++|++||++|
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~ 51 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 3789999999 99999999999999 899999999986
No 120
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.2e-06 Score=69.51 Aligned_cols=38 Identities=37% Similarity=0.646 Sum_probs=35.4
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++||++|||+...|++||.++++ ++++|++|||+|...
T Consensus 33 i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d 70 (83)
T 2dai_A 33 LRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 78999999999999999999965 899999999999766
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.19 E-value=4.3e-05 Score=96.46 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=94.6
Q ss_pred HHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc-cHHHHHHHHHHHHHhhhhcCCceEEEEeCCc
Q 008664 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS-GVKDVRDAVEDARKLRVKSNKRTVLFVDEVH 227 (558)
Q Consensus 149 l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~il~IDEid 227 (558)
+..++... .+..+.||+|||||.+++.+|+.++ ..++.++|... ....+..++..+.. .+...++||++
T Consensus 597 l~~Al~~~--~gg~~~GPaGtGKTet~k~La~~lg--r~~~vfnC~~~~d~~~~g~i~~G~~~------~GaW~cfDEfN 666 (3245)
T 3vkg_A 597 LTQALESR--MGGNPFGPAGTGKTETVKALGSQLG--RFVLVFCCDEGFDLQAMSRIFVGLCQ------CGAWGCFDEFN 666 (3245)
T ss_dssp HHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHH------HTCEEEEETTT
T ss_pred HHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHhhHhh------cCcEEEehhhh
Confidence 34444433 4567999999999999999999999 88999999766 55566666666544 45788999999
Q ss_pred cCCHHHHHHHHhhHh----------------cC-------cEEEEeccCCCC----CCCCcHHhhcccceeeccCCCHHH
Q 008664 228 RFNKSQQDSFLPVIE----------------DG-------SIVFIGATTENP----SFHLITPLLSRCRVLTLNPLKPHD 280 (558)
Q Consensus 228 ~l~~~~~~~Ll~~le----------------~~-------~iilI~att~n~----~~~l~~aL~sR~~~i~~~~l~~~~ 280 (558)
++..+....+.+.+. +| ...++++. || ...++..|.+||+.+.+..|+.+.
T Consensus 667 rl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTm--NpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 667 RLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTM--NPGYAGRSNLPDNLKKLFRSMAMIKPDREM 744 (3245)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECB--CCCGGGCCCSCHHHHTTEEEEECCSCCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEe--CCCccCcccChHHHHhhcEEEEEeCCCHHH
Confidence 999987776655443 02 12344433 43 357899999999999999999988
Q ss_pred HHHHHHH
Q 008664 281 VEILLKR 287 (558)
Q Consensus 281 i~~iL~~ 287 (558)
+.+++..
T Consensus 745 i~ei~L~ 751 (3245)
T 3vkg_A 745 IAQVMLY 751 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 122
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.15 E-value=1.7e-06 Score=67.01 Aligned_cols=38 Identities=39% Similarity=0.820 Sum_probs=35.6
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++||++|||+...+++||.++++ ++++|++|||+|...
T Consensus 33 v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 33 VDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCC
Confidence 78999999999999999999998 899999999998755
No 123
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.14 E-value=2e-06 Score=67.78 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=35.2
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
+++|++|||+.+.+++||.++++ .+++|++|||+|.-.
T Consensus 33 I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~ 70 (83)
T 1veg_A 33 INQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 68999999999999999999999 599999999998764
No 124
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.11 E-value=3e-06 Score=65.24 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=35.5
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
+++|++|||+.+.+++||.++++ ++++|++||+++..+
T Consensus 33 I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 33 IQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP 70 (73)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 68999999999999999999998 799999999998765
No 125
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.09 E-value=1.4e-05 Score=87.17 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=96.3
Q ss_pred ccccccCCchHHHHHHHHcC---CCCeEEEEcCCCchHHHHHHHHHH----HhCCCceE-EEEecccc---cH-HHHHHH
Q 008664 137 VGQDHLLSPNSLLRSAVCSN---RLPSIIFWGPPGTGKTTLAKAIVN----SVAVSYKF-VCLSAVTS---GV-KDVRDA 204 (558)
Q Consensus 137 iGq~~~i~~~~~l~~~i~~~---~~~~~LL~GppGtGKTtLa~~la~----~l~~~~~~-i~l~~~~~---~~-~~i~~~ 204 (558)
+|++..+ ..+..++... ....+.|+|+.|+||||||+.+++ .....+.. +.++.+.. +. .-++.+
T Consensus 131 ~GR~~~~---~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHV---DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHH---HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHH---HHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 4998887 8888888654 457799999999999999999997 33322322 22232221 11 112222
Q ss_pred HHHH------------------------HHhhhhcCC-ceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCCCC
Q 008664 205 VEDA------------------------RKLRVKSNK-RTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFH 259 (558)
Q Consensus 205 ~~~~------------------------~~~~~~~~~-~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~~~ 259 (558)
+... ... ..++ +.+||||+++... +. .+... .|..++ . ||.+..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--L~~~kr~LlVLDdv~~~~--~~--~~~~~-~gs~il-v-TTR~~~-- 276 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNA--LIDRPNTLFVFDDVVQEE--TI--RWAQE-LRLRCL-V-TTRDVE-- 276 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH--HTTSTTEEEEEEEECCHH--HH--HHHHH-TTCEEE-E-EESBGG--
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHH--HcCCCcEEEEEECCCCch--hh--ccccc-CCCEEE-E-EcCCHH--
Confidence 2211 111 1244 7899999998742 21 12211 343333 3 333321
Q ss_pred CcHHhhcccceeeccCCCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHH
Q 008664 260 LITPLLSRCRVLTLNPLKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNA 329 (558)
Q Consensus 260 l~~aL~sR~~~i~~~~l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~ 329 (558)
+.........++.+.+++.++...++.+.+.. .....-..++...|++.++|.+-.+.-+
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~----------~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMP----------MPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCC----------CC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcC----------CCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 11111011246899999999999988875311 0110122356788999999999766544
No 126
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.08 E-value=3.6e-06 Score=58.95 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=31.8
Q ss_pred hhHHHHhcCCC-HHHHHHHHHHhCCccHHHHHHHHHhh
Q 008664 2 EMEQLLSMGFP-DELAAEALAATGGKSTLKATEWILSH 38 (558)
Q Consensus 2 ~~~~~~~~g~~-~~~~~~al~~~g~~~~~~~~~w~~~~ 38 (558)
.+++|.+|||. +..+.+||.+++| ++++|++|||++
T Consensus 10 ~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~ 46 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 47899999995 5678999999999 889999999974
No 127
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.06 E-value=3.2e-06 Score=71.92 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=34.6
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhc
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHK 39 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~ 39 (558)
|+||++||||...|+|||.++|+ +.+++++||+.|.
T Consensus 12 v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~ 47 (118)
T 4ae4_A 12 VETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhc
Confidence 68999999999999999999999 9999999999996
No 128
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.05 E-value=1e-06 Score=62.09 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=33.8
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKS 40 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~ 40 (558)
+++|.+|||+...+.+|+.++|+ +.+.|++|||+|.-
T Consensus 8 I~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 8 IERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNF 44 (47)
T ss_dssp HTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcC
Confidence 67999999999999999999995 88999999998753
No 129
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.04 E-value=6.1e-06 Score=59.84 Aligned_cols=39 Identities=38% Similarity=0.478 Sum_probs=34.2
Q ss_pred hhHHHHhcCCCHH-HHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDE-LAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~-~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
.|++|.+|||.+. .+++||.+++| ++++|++|||++...
T Consensus 12 ~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 12 QLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 4789999999665 67999999999 889999999998765
No 130
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.04 E-value=1.8e-05 Score=79.28 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=42.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE------ecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL------SAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l------~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~ 231 (558)
..++|+||||+|||+||..++...+....|+.+ +....+ ...++......... .. +||||+++.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~---le~~l~~i~~~l~~--~~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTD---FNVFVDDIARAMLQ--HR-VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCC---HHHHHHHHHHHHHH--CS-EEEEECCTTTC-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcC---HHHHHHHHHHHHhh--CC-EEEEeccccccc
Confidence 457999999999999999999875444556666 222222 23333222222111 22 999999998843
No 131
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.03 E-value=5.7e-06 Score=62.22 Aligned_cols=39 Identities=38% Similarity=0.355 Sum_probs=34.8
Q ss_pred hhHHHHhcCCCHH-HHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDE-LAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~-~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
.|+||.+|||.+. .+.+||.+++| ++++|++|||++.+.
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~ 61 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 5889999999665 55999999998 889999999999877
No 132
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.02 E-value=6.3e-05 Score=89.39 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=101.8
Q ss_pred CCCCCCccccccccCCchHHHHHHHHc--CCCCeEEEEcCCCchHHHHHHHHHHHh---CCC--ceEEEEecccccHHH-
Q 008664 129 RPVNINDVVGQDHLLSPNSLLRSAVCS--NRLPSIIFWGPPGTGKTTLAKAIVNSV---AVS--YKFVCLSAVTSGVKD- 200 (558)
Q Consensus 129 rp~~~~dviGq~~~i~~~~~l~~~i~~--~~~~~~LL~GppGtGKTtLa~~la~~l---~~~--~~~i~l~~~~~~~~~- 200 (558)
-|.....++|++..+ ..|..++.. +..+.+.|+|+.|+|||+||+.+++.. ... ..++.++........
T Consensus 119 ~p~~~~~~vgR~~~~---~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLV---HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCCSSCCCCHHHH---HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCCceeccHHHHH---HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 455667799999988 888888853 344678999999999999999888652 211 122233322211111
Q ss_pred ---HH---------------------HHHHHHHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCC
Q 008664 201 ---VR---------------------DAVEDARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENP 256 (558)
Q Consensus 201 ---i~---------------------~~~~~~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~ 256 (558)
+. .+............++.+||||+++.. .+ + ..+..+.. +|. ||.++
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~---~-~~~~~~~~-ilv-TtR~~ 267 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WV---L-KAFDNQCQ-ILL-TTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HH---H-TTTCSSCE-EEE-EESST
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HH---H-HhhcCCCE-EEE-EcCCH
Confidence 11 111111211111134789999999853 22 2 22233333 333 44443
Q ss_pred CCCCcHHhhcccceeeccC-CCHHHHHHHHHHHHHhHhcccccccCCcccccChHHHHHHHHhCCCCHHHHHHHH
Q 008664 257 SFHLITPLLSRCRVLTLNP-LKPHDVEILLKRAVDDVNNGLSKSVGGTRVEVNHDAIEFLCSNCDGDARVALNAL 330 (558)
Q Consensus 257 ~~~l~~aL~sR~~~i~~~~-l~~~~i~~iL~~~l~~~~~~~~~~~~~~~~~i~~~al~~La~~s~Gd~R~~~~~L 330 (558)
. +..........+.+.+ ++.++..+++...... .. .-.++....|++.++|.+-.+.-+-
T Consensus 268 ~--~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~-----------~~-~~~~~~~~~i~~~~~glPLal~~~~ 328 (1249)
T 3sfz_A 268 S--VTDSVMGPKHVVPVESGLGREKGLEILSLFVNM-----------KK-EDLPAEAHSIIKECKGSPLVVSLIG 328 (1249)
T ss_dssp T--TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS-----------CS-TTCCTHHHHHHHHTTTCHHHHHHHH
T ss_pred H--HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC-----------Ch-hhCcHHHHHHHHHhCCCHHHHHHHH
Confidence 2 1111122335778886 9999999998876532 11 1123567789999999876555443
No 133
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.01 E-value=4.7e-06 Score=66.38 Aligned_cols=38 Identities=37% Similarity=0.482 Sum_probs=33.5
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++||++|||+.+.|++|| ++++..+++|++|||+|...
T Consensus 25 I~qL~~MGF~~~~a~~AL-~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 25 IKQLTDMGFPREPAEEAL-KSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHTCCHHHHHHHH-HHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHcCCCHHHHHHHH-HHcCCCHHHHHHHHHHCcCC
Confidence 689999999999999999 45455899999999999765
No 134
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.01 E-value=6e-06 Score=63.64 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=35.1
Q ss_pred hhHHHHhcCC-CHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGF-PDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~-~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
.|+||.+||| +++.+++||.+++| ++++|++|||++.+.
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~ 71 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCC
Confidence 4789999999 56888999999998 889999999998776
No 135
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.00 E-value=5.4e-06 Score=56.37 Aligned_cols=33 Identities=42% Similarity=0.544 Sum_probs=31.0
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHH
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWIL 36 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~ 36 (558)
+++|++|||+.+.+++||.++++ .+++|++|++
T Consensus 8 i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 8 IAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 68999999999999999999988 8999999985
No 136
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.99 E-value=6.9e-06 Score=60.34 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=32.8
Q ss_pred hhHHHHhcCCC-HHHHHHHHHHhCCccHHHHHHHHHhhc
Q 008664 2 EMEQLLSMGFP-DELAAEALAATGGKSTLKATEWILSHK 39 (558)
Q Consensus 2 ~~~~~~~~g~~-~~~~~~al~~~g~~~~~~~~~w~~~~~ 39 (558)
.|+||.+|||. ++.+++||.+++| ++++|++|||++.
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~ 57 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 47899999995 6688999999999 8899999999874
No 137
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.96 E-value=3.4e-06 Score=79.33 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=60.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh------CCC-ceEEEEecccccHHHH------------------HHHHHHHHHhhh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV------AVS-YKFVCLSAVTSGVKDV------------------RDAVEDARKLRV 213 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l------~~~-~~~i~l~~~~~~~~~i------------------~~~~~~~~~~~~ 213 (558)
...+++|+||+|||++|..++... ... .+++..+..+.....+ ...+.+....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-- 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-- 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc--
Confidence 468999999999999998865443 111 2222222211100000 0011111000
Q ss_pred hcCCceEEEEeCCccCC--H-HH--HHHHHhhHhc---CcEEEEeccCCCCCCCCcHHhhcccc-eeeccC
Q 008664 214 KSNKRTVLFVDEVHRFN--K-SQ--QDSFLPVIED---GSIVFIGATTENPSFHLITPLLSRCR-VLTLNP 275 (558)
Q Consensus 214 ~~~~~~il~IDEid~l~--~-~~--~~~Ll~~le~---~~iilI~att~n~~~~l~~aL~sR~~-~i~~~~ 275 (558)
..+++.||||||+|.+. . .. ...++..++. ..+.+|.+| ++...++.+++.|+. .+++.+
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~t--q~~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLT--QGPKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEE--SCGGGBCHHHHTTEEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEEC--CCHHHHhHHHHHHhheEEEEcC
Confidence 12468899999999982 2 11 1134445544 224445555 335678889999984 566665
No 138
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.92 E-value=7e-06 Score=71.18 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=37.1
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
|++|++|||+...|++||..+|+..++.|++||+.|...
T Consensus 7 l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 7 VMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 689999999999999999999998999999999999876
No 139
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.76 E-value=6.4e-05 Score=72.54 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=57.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHH--------------------------HHh-
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDA--------------------------RKL- 211 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~--------------------------~~~- 211 (558)
..++++||+|+|||.++..++...+ ...+.+.....-..++...+... ...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~--~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~ 186 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS--TPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC--SCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH
Confidence 4599999999999999999988876 55555554432222222222110 000
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
........+|||||+|.+.......++..+....++++.+|
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~~l~LSAT 227 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTAT 227 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCSEEEEEEES
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhccCCEEEEEecC
Confidence 00112468999999999987766666666655555555555
No 140
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.76 E-value=2.8e-05 Score=84.87 Aligned_cols=99 Identities=20% Similarity=0.339 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHH----HHHhhh-----------hcCCceEE
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVED----ARKLRV-----------KSNKRTVL 221 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~----~~~~~~-----------~~~~~~il 221 (558)
.+.++|+|||||||||++..++..+. ....++-+..+......+.+.+.. ...... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 36899999999999999999988663 224444443333233333321100 000000 01145799
Q ss_pred EEeCCccCCHHHHHHHHhhHhc-CcEEEEeccCCCC
Q 008664 222 FVDEVHRFNKSQQDSFLPVIED-GSIVFIGATTENP 256 (558)
Q Consensus 222 ~IDEid~l~~~~~~~Ll~~le~-~~iilI~att~n~ 256 (558)
||||++.++......|+..+.. .+++++|-....+
T Consensus 284 IIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~ 319 (574)
T 3e1s_A 284 IVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLP 319 (574)
T ss_dssp EECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCC
T ss_pred EEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccC
Confidence 9999999999999999888875 4677887665443
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.70 E-value=0.00011 Score=70.01 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=54.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccc---c--------c-------HHHHHHHHHHHHHhhhhcCCce
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVT---S--------G-------VKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~---~--------~-------~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
..++++||+|+||||++..++..+. ....++.+.... . + .....++++.+.... ......
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~-~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS-FNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT-SCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh-hCCCCC
Confidence 4588999999999999888887763 123333332111 0 1 011123444433321 223578
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcC-cEEEEec
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDG-SIVFIGA 251 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~-~iilI~a 251 (558)
+|+|||++.+..++.+.+..+.+.+ .++++|-
T Consensus 92 vViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 92 VIGIDEVQFFDDRICEVANILAENGFVVIISGL 124 (223)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHHTTCEEEEECC
T ss_pred EEEEecCccCcHHHHHHHHHHHhCCCeEEEEec
Confidence 9999999999888777666555543 3444443
No 142
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=97.60 E-value=5.5e-05 Score=64.22 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.8
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKS 40 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~ 40 (558)
+.+|.+|||+.+.+++||..++| ..++|++||+++..
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~~~ 116 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHhcc
Confidence 68999999999999999999999 77999999998753
No 143
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.57 E-value=0.0005 Score=65.34 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=65.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccHHHHHHHHHHH--------------------HHhhhhcCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGVKDVRDAVEDA--------------------RKLRVKSNK 217 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~~~i~~~~~~~--------------------~~~~~~~~~ 217 (558)
-++++.|+|||||||++-.+|..+. ....++.+.....+....-.++... ... ...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--L~~~ 84 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDAL--LKAA 84 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHH--HHHC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHH--HhcC
Confidence 4699999999999999988887763 1134333332211111111111100 000 0125
Q ss_pred ceEEEEeCCccCCHH------HHHHHHhhHhcCcEEEEeccCCC----------------CCCCCcHHhhcccceeeccC
Q 008664 218 RTVLFVDEVHRFNKS------QQDSFLPVIEDGSIVFIGATTEN----------------PSFHLITPLLSRCRVLTLNP 275 (558)
Q Consensus 218 ~~il~IDEid~l~~~------~~~~Ll~~le~~~iilI~att~n----------------~~~~l~~aL~sR~~~i~~~~ 275 (558)
+.+++|||+-..+.. ....+...++.+ +-++.+++-. ....++..++.++..+.+-.
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg-idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD 163 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG-IDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLID 163 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT-CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC-CCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEec
Confidence 789999998765211 222333344544 3333333211 12345667777777778888
Q ss_pred CCHHHHHHH
Q 008664 276 LKPHDVEIL 284 (558)
Q Consensus 276 l~~~~i~~i 284 (558)
++++++...
T Consensus 164 ~~p~~l~~r 172 (228)
T 2r8r_A 164 LPPRELLER 172 (228)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 888875554
No 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.56 E-value=0.00088 Score=76.70 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=35.4
Q ss_pred ccccccCCchHHHHHHHHc-CCCCeEEEEcCCCchHHHHHHHHHHH
Q 008664 137 VGQDHLLSPNSLLRSAVCS-NRLPSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 137 iGq~~~i~~~~~l~~~i~~-~~~~~~LL~GppGtGKTtLa~~la~~ 181 (558)
+|++..+ ..|..++.. ...+.+.|+|+.|+||||||+.+++.
T Consensus 131 VGRe~eL---eeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPY---LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHH---HHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHH---HHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 7888887 888888876 34578999999999999999999863
No 145
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.54 E-value=0.00017 Score=79.33 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=58.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-----CCceEEEEecccccHHHHHHHHHHHHHh----------------------
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-----VSYKFVCLSAVTSGVKDVRDAVEDARKL---------------------- 211 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-----~~~~~i~l~~~~~~~~~i~~~~~~~~~~---------------------- 211 (558)
+.++++|+|||||||++..+...+. ....++-+..+......+.+.+......
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 6799999999999999888776552 1234444433333333333322211000
Q ss_pred ------------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccC
Q 008664 212 ------------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATT 253 (558)
Q Consensus 212 ------------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att 253 (558)
........+|||||++.++......|+..+.. .+++++|-..
T Consensus 245 ~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~ 299 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 (608)
T ss_dssp -----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTT
T ss_pred ccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchh
Confidence 00001356999999999998888888887755 5677777553
No 146
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.54 E-value=0.00021 Score=64.56 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=27.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.++|.|+||+||||+++.|++.++ ..++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK--YPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC--CCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeeecCcc
Confidence 589999999999999999999998 77765543
No 147
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.53 E-value=6.9e-05 Score=64.84 Aligned_cols=37 Identities=38% Similarity=0.597 Sum_probs=35.0
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKS 40 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~ 40 (558)
+++|++|||+.+.|++||.++|+ ..++|++||++|..
T Consensus 82 v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 82 VAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 68999999999999999999988 78999999999887
No 148
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.49 E-value=5.8e-05 Score=70.10 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=50.4
Q ss_pred CeEEEEcCCCchHH-HHHHHHHHHhCCCceEEEEecccc---c---HHHH------------HHHHHHHHHhhhhcCCce
Q 008664 159 PSIIFWGPPGTGKT-TLAKAIVNSVAVSYKFVCLSAVTS---G---VKDV------------RDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKT-tLa~~la~~l~~~~~~i~l~~~~~---~---~~~i------------~~~~~~~~~~~~~~~~~~ 219 (558)
.-.++|||.|+||| .|.+++.+.......++.+.+... + ...+ .++++. .....
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~-------~~~~D 93 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQE-------ALGVA 93 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHH-------HHTCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHh-------ccCCC
Confidence 45899999999999 899999887654466666654311 1 1111 111111 12457
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEE
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIV 247 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~ii 247 (558)
+|+|||++.+ +++.+.+..+.+.+..+
T Consensus 94 vIlIDEaQFf-k~~ve~~~~L~~~gk~V 120 (195)
T 1w4r_A 94 VIGIDEGQFF-PDIVEFCEAMANAGKTV 120 (195)
T ss_dssp EEEESSGGGC-TTHHHHHHHHHHTTCEE
T ss_pred EEEEEchhhh-HHHHHHHHHHHHCCCeE
Confidence 9999999999 66555554444545433
No 149
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=0.00026 Score=65.79 Aligned_cols=71 Identities=10% Similarity=0.222 Sum_probs=42.8
Q ss_pred CCceEEEEeCCccC---CHHHHHHHHhhHhcCcEEEEeccC--CCCCCCCcHHhhcc--cceeeccCCCHHHHHHHHH
Q 008664 216 NKRTVLFVDEVHRF---NKSQQDSFLPVIEDGSIVFIGATT--ENPSFHLITPLLSR--CRVLTLNPLKPHDVEILLK 286 (558)
Q Consensus 216 ~~~~il~IDEid~l---~~~~~~~Ll~~le~~~iilI~att--~n~~~~l~~aL~sR--~~~i~~~~l~~~~i~~iL~ 286 (558)
..+.+|||||+..+ +...++.|..+++....+++++.+ .+....+...+..+ +.++.+.+-+.+.+..-+.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 46789999998666 445778888888875444443222 22222445555553 4677777766555544443
No 150
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.44 E-value=0.00051 Score=64.61 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=27.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEeccc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVT 195 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~ 195 (558)
..++|+||||+||||++..++...+ ..++.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSG--KKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC--SEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcC--CcEEEEECCC
Confidence 4689999999999999999998434 5566665543
No 151
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.41 E-value=0.0011 Score=59.47 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=25.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.||||+||||+++.+ +.++ ..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG--AKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC--CcEEEH
Confidence 5899999999999999999 8888 777664
No 152
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=97.37 E-value=0.00019 Score=59.49 Aligned_cols=37 Identities=43% Similarity=0.598 Sum_probs=33.3
Q ss_pred hhHHHHhcCCCH-HHHHHHHHHhCCccHHHHHHHHHhhc
Q 008664 2 EMEQLLSMGFPD-ELAAEALAATGGKSTLKATEWILSHK 39 (558)
Q Consensus 2 ~~~~~~~~g~~~-~~~~~al~~~g~~~~~~~~~w~~~~~ 39 (558)
.|+||.+|||.+ +.+.+||.+++| ++++|++||+++.
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~ 106 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcC
Confidence 478999999955 799999999999 7899999999874
No 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.30 E-value=0.00083 Score=68.72 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEec-----------------ccccHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSA-----------------VTSGVKDVRDAVED 207 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~-----------------~~~~~~~i~~~~~~ 207 (558)
..+..+... ....++|.||+|+||||+.++++..+.. ...++.+.. .......+...+..
T Consensus 113 ~~l~~l~~~-~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 113 EVFKRVSDV-PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp HHHHHHHHC-SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred HHHHHHHhC-CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHH
Confidence 344554433 2357999999999999999999987741 122222211 00011122333333
Q ss_pred HHHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEE
Q 008664 208 ARKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFI 249 (558)
Q Consensus 208 ~~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI 249 (558)
+ ....+.+|++||+- +....+.++...+.|..+++
T Consensus 192 a-----L~~~PdvillDEp~--d~e~~~~~~~~~~~G~~vl~ 226 (356)
T 3jvv_A 192 A-----LREDPDIILVGEMR--DLETIRLALTAAETGHLVFG 226 (356)
T ss_dssp H-----TTSCCSEEEESCCC--SHHHHHHHHHHHHTTCEEEE
T ss_pred H-----hhhCcCEEecCCCC--CHHHHHHHHHHHhcCCEEEE
Confidence 2 23478999999996 57777777888887776443
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.27 E-value=0.0017 Score=61.32 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|+||+|+|||||++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999654
No 155
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.21 E-value=0.00061 Score=63.34 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc------------c-------HHHHHHHHHHHHHhhhhcCCc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS------------G-------VKDVRDAVEDARKLRVKSNKR 218 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~------------~-------~~~i~~~~~~~~~~~~~~~~~ 218 (558)
.-.+++||.|+||||.+-.++.... ....++.+..... + .....++++.+ ....
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~------~~~~ 82 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF------EEDT 82 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC------CTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH------hccC
Confidence 3589999999999998888877762 1133332221100 0 00111222211 1246
Q ss_pred eEEEEeCCccCCHHHHHHHHhhHhcC
Q 008664 219 TVLFVDEVHRFNKSQQDSFLPVIEDG 244 (558)
Q Consensus 219 ~il~IDEid~l~~~~~~~Ll~~le~~ 244 (558)
.+|+|||++.++++..+.|..+.+.+
T Consensus 83 dvViIDEaqfl~~~~v~~l~~l~~~~ 108 (191)
T 1xx6_A 83 EVIAIDEVQFFDDEIVEIVNKIAESG 108 (191)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 89999999999888877766656653
No 156
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.14 E-value=0.0017 Score=61.50 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.++....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999998543
No 157
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.14 E-value=0.00044 Score=83.30 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=45.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCC-ce--EEEEeccc---------------------ccHHHHHHHHHHHHHhhhh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVS-YK--FVCLSAVT---------------------SGVKDVRDAVEDARKLRVK 214 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~-~~--~i~l~~~~---------------------~~~~~i~~~~~~~~~~~~~ 214 (558)
+.+++|||||||||+||++++.+...+ .+ |+.+.... .++..++.++..++.
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~---- 1158 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS---- 1158 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH----
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh----
Confidence 459999999999999999999876411 22 33332211 134455555544433
Q ss_pred cCCceEEEEeCCccCCHH
Q 008664 215 SNKRTVLFVDEVHRFNKS 232 (558)
Q Consensus 215 ~~~~~il~IDEid~l~~~ 232 (558)
..+++||+|+++.+.+.
T Consensus 1159 -~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1159 -GAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp -TCCSEEEESCGGGCCCH
T ss_pred -cCCeEEEeCchHhcCcc
Confidence 37899999999866543
No 158
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.12 E-value=0.00036 Score=63.49 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=27.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|+|+||+||||+++.+++.++ ..++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~--~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP--EPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS--SCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCeEEec
Confidence 4689999999999999999999998 6666554
No 159
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.08 E-value=0.00086 Score=62.01 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=61.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---------------cHHHHHHHHHHHHHhhhhcCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---------------GVKDVRDAVEDARKLRVKSNKRTVLFV 223 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---------------~~~~i~~~~~~~~~~~~~~~~~~il~I 223 (558)
+.++|+||+|+|||||++.|.+.....+. +.++.++- +.+++...++ .+..+--
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~-~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~----------~g~flE~ 70 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG-FSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK----------NNEFIEW 70 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE-ECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH----------TTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE-EEEEEeccCCCCCCcCCceeEeecHHHHHHHHH----------cCCEEEE
Confidence 45999999999999999999888652121 12222111 1222222222 2344444
Q ss_pred eCCccC-CHHHHHHHHhhHhcCcEEEEeccCCCCCCCCcHHhhcc----cceeeccCCCHHHHHHHHHH
Q 008664 224 DEVHRF-NKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSR----CRVLTLNPLKPHDVEILLKR 287 (558)
Q Consensus 224 DEid~l-~~~~~~~Ll~~le~~~iilI~att~n~~~~l~~aL~sR----~~~i~~~~l~~~~i~~iL~~ 287 (558)
-++|.. -....+.+...++.|..+++-... .-...+... ...|.+.|++.+++...|..
T Consensus 71 ~~~~g~~YGt~~~~v~~~l~~g~~vil~id~-----~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (186)
T 1ex7_A 71 AQFSGNYYGSTVASVKQVSKSGKTCILDIDM-----QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG 134 (186)
T ss_dssp EEETTEEEEEEHHHHHHHHHHTSEEEEECCH-----HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred EEEcCceeeeecceeeehhhCCCEEEecCCH-----HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence 444422 112334556667777766653221 111233332 24577888998888776654
No 160
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.0027 Score=60.60 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-------CCceEEEEeccc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-------VSYKFVCLSAVT 195 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-------~~~~~i~l~~~~ 195 (558)
..++|+||||+||||++..++.... .....+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5689999999999999999998531 124566666544
No 161
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.07 E-value=0.00038 Score=63.82 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
...++|.|+||+||||+++.+++.++ ..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--CCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEECh
Confidence 35799999999999999999999998 7777543
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.06 E-value=0.0022 Score=62.65 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=50.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEecc-----------------cccHHHHHHHHHHHHHhhhhcCCce
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAV-----------------TSGVKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
..++|.||+|+||||++++++..+.. ...++..... ......++..+..+-. ..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~-----~~p~ 100 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR-----EDPD 100 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHH-----HCCS
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHh-----hCCC
Confidence 56999999999999999999987641 1222221100 0011123333333322 2678
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEEEE
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIVFI 249 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~iilI 249 (558)
+|++||.- +......+++..+.+..+++
T Consensus 101 illlDEp~--D~~~~~~~l~~~~~g~~vl~ 128 (261)
T 2eyu_A 101 VIFVGEMR--DLETVETALRAAETGHLVFG 128 (261)
T ss_dssp EEEESCCC--SHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCCC--CHHHHHHHHHHHccCCEEEE
Confidence 99999996 55555555666666665443
No 163
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.05 E-value=0.0009 Score=69.97 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=65.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHH-------------HHhhhhcC-----CceE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDA-------------RKLRVKSN-----KRTV 220 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~-------------~~~~~~~~-----~~~i 220 (558)
...++.|+||+|||+++..+++. ...+.+........++++-+... ........ ...+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~ 237 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF----EEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKR 237 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT----TTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSE
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc----CCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCE
Confidence 46799999999999999877653 23455666655666666554311 01111111 1579
Q ss_pred EEEeCCccCCHHHHHHHHhhHhcCcEEEEeccCCCCC
Q 008664 221 LFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPS 257 (558)
Q Consensus 221 l~IDEid~l~~~~~~~Ll~~le~~~iilI~att~n~~ 257 (558)
|||||+..++......++..+....++++|-...-++
T Consensus 238 liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~ 274 (446)
T 3vkw_A 238 LFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPY 274 (446)
T ss_dssp EEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCC
T ss_pred EEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccC
Confidence 9999999999999888888887788888887654443
No 164
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.99 E-value=0.0093 Score=64.24 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=47.6
Q ss_pred ceEEEEeCCccCC----HHHHHHHHhhHhcC---cEEEEeccCCCCCCCCcHHhhcccc-eeeccCCCHHHHHHHHH
Q 008664 218 RTVLFVDEVHRFN----KSQQDSFLPVIEDG---SIVFIGATTENPSFHLITPLLSRCR-VLTLNPLKPHDVEILLK 286 (558)
Q Consensus 218 ~~il~IDEid~l~----~~~~~~Ll~~le~~---~iilI~att~n~~~~l~~aL~sR~~-~i~~~~l~~~~i~~iL~ 286 (558)
+.+|||||++.+. +...+.|..+...| .+.+|++|.......+...+++-|. .|.|.--+..+...+|.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4699999999773 44455566666554 4777777643323467778888774 67788788888887775
No 165
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.95 E-value=0.0016 Score=60.77 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988777653
No 166
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.93 E-value=0.0019 Score=60.80 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=46.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc---cHHHHHHHHHHH---------HHhhh-hcCCceEEEEeC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS---GVKDVRDAVEDA---------RKLRV-KSNKRTVLFVDE 225 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~---~~~~i~~~~~~~---------~~~~~-~~~~~~il~IDE 225 (558)
-.+++||.|+||||.+-.++.... ....++.+..... +...+..-+... ..... ..+...+|+|||
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDE 109 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDE 109 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEEC
Confidence 367999999999998877776652 2244544443222 111111111000 00000 112468999999
Q ss_pred CccCCHHHHHHHHhhHhcC
Q 008664 226 VHRFNKSQQDSFLPVIEDG 244 (558)
Q Consensus 226 id~l~~~~~~~Ll~~le~~ 244 (558)
++.+++++.+.|..+.+.+
T Consensus 110 aQF~~~~~V~~l~~l~~~~ 128 (214)
T 2j9r_A 110 VQFFDGDIVEVVQVLANRG 128 (214)
T ss_dssp GGGSCTTHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhhCC
Confidence 9999988886666555554
No 167
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.92 E-value=0.00089 Score=62.99 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=50.3
Q ss_pred CeEEEEcCCCchHHH-HHHHHHHHhCCCceEEEEecccccHHHHHHHHH------------HHHHhhh-hcCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTT-LAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVE------------DARKLRV-KSNKRTVLFVD 224 (558)
Q Consensus 159 ~~~LL~GppGtGKTt-La~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~------------~~~~~~~-~~~~~~il~ID 224 (558)
.-.+++||-|+|||| |.+.+.+.......++.+......-.....+.. ....... ...+..+|+||
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~ID 108 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGID 108 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEEe
Confidence 347899999999999 556655544323444444332111000000000 0000000 12356799999
Q ss_pred CCccCCHHHHHHHHhhHhcCcEEEE
Q 008664 225 EVHRFNKSQQDSFLPVIEDGSIVFI 249 (558)
Q Consensus 225 Eid~l~~~~~~~Ll~~le~~~iilI 249 (558)
|++.|++++.+.|..+.+.+..+++
T Consensus 109 EaQFf~~~~v~~l~~la~~gi~Vi~ 133 (219)
T 3e2i_A 109 EVQFFDDEIVSIVEKLSADGHRVIV 133 (219)
T ss_dssp CGGGSCTHHHHHHHHHHHTTCEEEE
T ss_pred chhcCCHHHHHHHHHHHHCCCEEEE
Confidence 9999999988888887765544433
No 168
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.92 E-value=0.00063 Score=61.89 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~--~~~~d~ 35 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD--LVFLDS 35 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT--CEEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcc
Confidence 3689999999999999999999998 777753
No 169
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.91 E-value=0.0015 Score=68.69 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+...++|+||+|+|||+|++.++....
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3446799999999999999999887653
No 170
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.0007 Score=63.10 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=28.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|.||||+||||+++.|++.++ ..++..+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~--~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN--VPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT--CCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcch
Confidence 5799999999999999999999998 7776543
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.86 E-value=0.0021 Score=78.42 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=27.9
Q ss_pred HHHHHHHH-c--CCCCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 147 SLLRSAVC-S--NRLPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 147 ~~l~~~i~-~--~~~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..|-.++. . .+..+++|+||||||||+||.+++.+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44666655 2 234789999999999999999988765
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.86 E-value=0.00086 Score=61.22 Aligned_cols=31 Identities=39% Similarity=0.774 Sum_probs=27.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|+|+||+||||+++.+++.++ ..++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG--LKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEH
Confidence 5699999999999999999999998 776643
No 173
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.85 E-value=0.0037 Score=63.69 Aligned_cols=71 Identities=24% Similarity=0.244 Sum_probs=42.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccH-------------------HHHHHHHHHHHHhhhhcCCc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGV-------------------KDVRDAVEDARKLRVKSNKR 218 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~-------------------~~i~~~~~~~~~~~~~~~~~ 218 (558)
..++|+||||+|||||+..++.... ....++.++...... ..+.+++..+.... .....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~-~~~~~ 140 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV-RSGAL 140 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-TTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH-hcCCC
Confidence 5699999999999999999886642 113444444322100 01222333222221 23467
Q ss_pred eEEEEeCCccCC
Q 008664 219 TVLFVDEVHRFN 230 (558)
Q Consensus 219 ~il~IDEid~l~ 230 (558)
.+||||++..+.
T Consensus 141 ~lIVIDsl~~l~ 152 (349)
T 2zr9_A 141 DIIVIDSVAALV 152 (349)
T ss_dssp SEEEEECGGGCC
T ss_pred CEEEEcChHhhc
Confidence 899999999876
No 174
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.84 E-value=0.0095 Score=55.21 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=58.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh-CCCceEEEE--ecc--cccH-----------------------------HHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVCL--SAV--TSGV-----------------------------KDVRDA 204 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~l--~~~--~~~~-----------------------------~~i~~~ 204 (558)
..+++++++|.||||+|-.++-.. +...++..+ ... ..++ ...+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 679999999999999999988765 222333333 221 1111 122233
Q ss_pred HHHHHHhhhhcCCceEEEEeCCccC---CHHHHHHHHhhHhc--CcEEEEeccCCCCCCCCcHHhhccc
Q 008664 205 VEDARKLRVKSNKRTVLFVDEVHRF---NKSQQDSFLPVIED--GSIVFIGATTENPSFHLITPLLSRC 268 (558)
Q Consensus 205 ~~~~~~~~~~~~~~~il~IDEid~l---~~~~~~~Ll~~le~--~~iilI~att~n~~~~l~~aL~sR~ 268 (558)
+..+.... ..+...+||+||+... .--..+.++.++.+ ...-+|.++. + .+++|+...
T Consensus 109 l~~a~~~l-~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr-~----ap~~l~e~A 171 (196)
T 1g5t_A 109 WQHGKRML-ADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR-G----CHRDILDLA 171 (196)
T ss_dssp HHHHHHHT-TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS-S----CCHHHHHHC
T ss_pred HHHHHHHH-hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC-C----CcHHHHHhC
Confidence 33333332 3467899999999432 11123356777765 3445555442 2 245566554
No 175
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00085 Score=60.67 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=26.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..++|.||+|+||||+++.|+..++ ..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~--~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN--MEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT--CEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEe
Confidence 4689999999999999999999988 66554
No 176
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.82 E-value=3.7e-05 Score=78.10 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=39.8
Q ss_pred HHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHH
Q 008664 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDA 204 (558)
Q Consensus 149 l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~ 204 (558)
+...+..+...+++|+|+||+||||++++|++.++ ..|+.+++...+..++++.
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~--~~f~~l~a~~~g~~~ir~~ 68 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN--EKYHTFLSEHPNVIEVNDR 68 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH--HHHHHHHHHSTTCCCEECT
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC--CCeeeecccccchHHHHHH
Confidence 33344456667899999999999999999999998 7776666655554444433
No 177
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.82 E-value=0.00084 Score=60.52 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+++|.|+||+||||+++.|++.++ .+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg--~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK--LEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT--CCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC--CCEEEC
Confidence 36799999999999999999999999 777754
No 178
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.81 E-value=0.0021 Score=65.10 Aligned_cols=96 Identities=18% Similarity=0.313 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---------------cHHHHHHHHHHHHHh
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---------------GVKDVRDAVEDARKL 211 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---------------~~~~i~~~~~~~~~~ 211 (558)
..+.-.+..+ ..++|.||+|+||||++++|+..+......+.+..... +....+..+..+
T Consensus 162 ~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a--- 236 (330)
T 2pt7_A 162 SAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC--- 236 (330)
T ss_dssp HHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH---
T ss_pred hhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH---
Confidence 4455555555 46999999999999999999998864444455543211 111223333332
Q ss_pred hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 212 RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 212 ~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
...++.+|++||.-. ....+ ++..+..+...+|.++
T Consensus 237 --L~~~p~ilildE~~~--~e~~~-~l~~~~~g~~tvi~t~ 272 (330)
T 2pt7_A 237 --LRMRPDRIILGELRS--SEAYD-FYNVLCSGHKGTLTTL 272 (330)
T ss_dssp --TTSCCSEEEECCCCS--THHHH-HHHHHHTTCCCEEEEE
T ss_pred --hhhCCCEEEEcCCCh--HHHHH-HHHHHhcCCCEEEEEE
Confidence 234788999999975 34444 4445555553333333
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.78 E-value=0.0069 Score=61.74 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+.|+||||+|||||++.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 180
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.76 E-value=0.00041 Score=70.90 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=36.0
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
+++|++|||+.+.|++||.++++ +.++|++||+++.+.
T Consensus 172 i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~ 209 (368)
T 1oqy_A 172 LTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPG 209 (368)
T ss_dssp HHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTT
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 67999999999999999999998 889999999999877
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.76 E-value=0.0054 Score=62.54 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=48.7
Q ss_pred HHHHHHHH-cCC--CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccccc-------------------HHHHHH
Q 008664 147 SLLRSAVC-SNR--LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSG-------------------VKDVRD 203 (558)
Q Consensus 147 ~~l~~~i~-~~~--~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~-------------------~~~i~~ 203 (558)
..|-.++. .+- ...++|+||||+|||||+..++..+. ....++.++..... ...+.+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence 44555544 222 14689999999999999999998753 11344455543210 011223
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCCH
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFNK 231 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~~ 231 (558)
++....... ......+++||.+..+.+
T Consensus 127 ~l~~~~~l~-~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 127 ALEIVDELV-RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHHHH-HTSCCSEEEEECTTTCCC
T ss_pred HHHHHHHHh-hhcCCCeEEehHhhhhcC
Confidence 333322221 224678999999987753
No 182
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.76 E-value=0.00094 Score=61.12 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=27.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+.++|.|+||+||||+++.|++.++ ..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG--VGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT--CCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC--CCEEeCc
Confidence 3589999999999999999999998 7776543
No 183
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.75 E-value=0.00082 Score=61.82 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH-hCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS-VAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~-l~~~~~~i~l~ 192 (558)
..++|+|+||+||||+++.+++. ++ ..++..+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG--FQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHH
Confidence 57999999999999999999999 67 7776543
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.68 E-value=0.0058 Score=56.75 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.....+.|.||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3346789999999999999999999884
No 185
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.66 E-value=0.0013 Score=59.25 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=27.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.+++.++ ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG--YEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT--CEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CcEEcc
Confidence 3589999999999999999999998 777653
No 186
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.64 E-value=0.0011 Score=64.57 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=28.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.++|.||||+||||+++.||+.++ ..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~--~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG--WPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC--CCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC--CeEEeccH
Confidence 478999999999999999999998 77776654
No 187
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.63 E-value=0.0012 Score=60.71 Aligned_cols=30 Identities=37% Similarity=0.567 Sum_probs=26.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..++|.|+||+||||+++.+++.++ ..++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~--~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR--LPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT--CCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CeEec
Confidence 4589999999999999999999998 66654
No 188
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.62 E-value=0.0021 Score=45.87 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=34.2
Q ss_pred hhHHHHhcCC-CHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGF-PDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~-~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
.|+||.+||| +.++-.++|.++|+ ++++|+++|+...-.
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 3789999999 77899999999999 889999999876544
No 189
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.61 E-value=0.0044 Score=59.34 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.5
Q ss_pred CeEEEEcCCCchHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIV 179 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la 179 (558)
..+.|.||+|+|||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 190
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.0016 Score=60.57 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=27.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|.|++|+||||+++.|++.++ ..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCC
Confidence 4699999999999999999999998 6666543
No 191
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.57 E-value=0.0085 Score=56.95 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=54.5
Q ss_pred CeEEEEcCCCchHHHHHHHHH-HHhCCCceEEEEecccccH--HHHHHHHHHH---------HHhhhhcCCceEEEEeCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIV-NSVAVSYKFVCLSAVTSGV--KDVRDAVEDA---------RKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la-~~l~~~~~~i~l~~~~~~~--~~i~~~~~~~---------~~~~~~~~~~~il~IDEi 226 (558)
.-.+++||.|+||||.+-..+ +.......++.+....... ..+..-+... ...........+|+|||+
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEa 99 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 99 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEESSG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEch
Confidence 347899999999997554444 4444334444443221110 1111100000 000001135689999999
Q ss_pred ccCCHHHHHHHHhhHhcCcEEEEeccCC----CCCCCCcHHhhccc
Q 008664 227 HRFNKSQQDSFLPVIEDGSIVFIGATTE----NPSFHLITPLLSRC 268 (558)
Q Consensus 227 d~l~~~~~~~Ll~~le~~~iilI~att~----n~~~~l~~aL~sR~ 268 (558)
+.+.. ...|...+.+..+.+|++.-. ...|.-.+.|+...
T Consensus 100 QF~~~--v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~A 143 (234)
T 2orv_A 100 QFFPD--IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLA 143 (234)
T ss_dssp GGCTT--HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGC
T ss_pred hhhhh--HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhc
Confidence 99975 666777776655555554322 12234445555443
No 192
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.0018 Score=59.70 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
...++|.|+||+||||+++.|++.++ ..++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHH
Confidence 35799999999999999999999998 7766543
No 193
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.56 E-value=0.011 Score=58.04 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEecccccHHHHHHHHHHHHHh-------------
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVTSGVKDVRDAVEDARKL------------- 211 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~~~~~~i~~~~~~~~~~------------- 211 (558)
..+..++.. ...++.+|+|+|||.++-.++.... .....+.+.....-..++.+.+......
T Consensus 120 ~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 196 (282)
T 1rif_A 120 DAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS 196 (282)
T ss_dssp HHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCS
T ss_pred HHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCc
Confidence 344444444 4578899999999999877776531 1135555544333223333322222100
Q ss_pred -----------------------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhc-CcEEEEeccC
Q 008664 212 -----------------------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIED-GSIVFIGATT 253 (558)
Q Consensus 212 -----------------------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~-~~iilI~att 253 (558)
........+|||||+|++.......++..+.. ..++.+.+|-
T Consensus 197 ~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 197 KDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp STTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSSC
T ss_pred chhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeCCC
Confidence 00112457999999999998766666666533 4455555553
No 194
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.56 E-value=0.0018 Score=61.13 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH--AAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--ceEEeh
Confidence 5689999999999999999999998 766654
No 195
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.55 E-value=0.0082 Score=61.29 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=43.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc----------------------cHHHHHHHHHHHHHhhhhc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS----------------------GVKDVRDAVEDARKLRVKS 215 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~----------------------~~~~i~~~~~~~~~~~~~~ 215 (558)
..++|+|+||+|||++|..++.... ....++.++.... ....+..++.... ..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~----~~ 139 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA----RS 139 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH----HH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH----hc
Confidence 5699999999999999999887652 1134555554221 1222333332221 22
Q ss_pred CCceEEEEeCCccCC
Q 008664 216 NKRTVLFVDEVHRFN 230 (558)
Q Consensus 216 ~~~~il~IDEid~l~ 230 (558)
....+||||.+..+.
T Consensus 140 ~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 140 GAVDVIVVDSVAALT 154 (356)
T ss_dssp TCCSEEEEECGGGCC
T ss_pred cCCCEEEEcCHHHhc
Confidence 467899999999875
No 196
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.54 E-value=0.0015 Score=59.76 Aligned_cols=29 Identities=38% Similarity=0.781 Sum_probs=25.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
.++|.|+||+||||+++.|++.++ ..++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~--~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG--FKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEec
Confidence 589999999999999999999988 66654
No 197
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.54 E-value=0.0047 Score=55.99 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=17.0
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
..+.|.||+|+|||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3588999999999999995
No 198
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.53 E-value=0.002 Score=60.03 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
....++|.||+|+||||+++.|+..++ ..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG--LEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEc
Confidence 345799999999999999999999987 55543
No 199
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.025 Score=53.90 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIV 179 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la 179 (558)
..+...+..+ ..+++.||+|+|||++...+.
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHH
Confidence 3444444444 579999999999998766554
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0096 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|+||||+|||+++..++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999988776553
No 201
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.51 E-value=0.0021 Score=59.81 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~--~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG--IPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--CCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CcEEeh
Confidence 4699999999999999999999998 776654
No 202
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.50 E-value=0.0017 Score=61.07 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=26.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.||||+||||+++.|++.++ ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG--IPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeH
Confidence 488999999999999999999988 666654
No 203
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0019 Score=60.77 Aligned_cols=29 Identities=34% Similarity=0.726 Sum_probs=25.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
.++|.||||+||+|.|+.|++.++ ...+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeEEc
Confidence 478999999999999999999988 66554
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.50 E-value=0.0062 Score=61.37 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=28.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-C------CceEEEEeccc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-V------SYKFVCLSAVT 195 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~------~~~~i~l~~~~ 195 (558)
..++|+||||+|||+++..++.... . ....+.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5699999999999999999998752 1 25666676654
No 205
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.49 E-value=0.0017 Score=61.49 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=25.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFV 189 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i 189 (558)
+.++|.||||+||+|.|+.|++.++ ...+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g--~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH--FNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC--CEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC--CceE
Confidence 5688999999999999999999988 5554
No 206
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.48 E-value=0.011 Score=61.34 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|+||||+|||||++.++-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 56999999999999999977643
No 207
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=59.39 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.5
Q ss_pred eEEEEcCCCchHHHHHHHHHH-HhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVN-SVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~-~l~ 183 (558)
.++|.|+||+||||+++.+++ .++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCC
Confidence 589999999999999999999 454
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.48 E-value=0.015 Score=59.49 Aligned_cols=71 Identities=28% Similarity=0.274 Sum_probs=43.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccccH-------------------HHHHHHHHHHHHhhhhcCCc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSGV-------------------KDVRDAVEDARKLRVKSNKR 218 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~~-------------------~~i~~~~~~~~~~~~~~~~~ 218 (558)
..++|+||||+|||+++..++.... ....++.++...... ....+++..+.... .....
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~-~~~~~ 153 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV-RSGAI 153 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-TTTCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH-hcCCC
Confidence 5689999999999999998887652 113444444322100 01222333332221 23467
Q ss_pred eEEEEeCCccCC
Q 008664 219 TVLFVDEVHRFN 230 (558)
Q Consensus 219 ~il~IDEid~l~ 230 (558)
.+||||.+..+.
T Consensus 154 ~lVVIDsl~~l~ 165 (366)
T 1xp8_A 154 DVVVVDSVAALT 165 (366)
T ss_dssp SEEEEECTTTCC
T ss_pred CEEEEeChHHhc
Confidence 899999999775
No 209
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0019 Score=59.31 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.+++.++ ..++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG--YTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CeEEeH
Confidence 3589999999999999999999998 666543
No 210
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.46 E-value=0.011 Score=57.93 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|+||+|+|||||+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998755
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.46 E-value=0.0019 Score=60.69 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=26.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.||||+||||+++.|++.++ ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEeeH
Confidence 478999999999999999999998 666654
No 212
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.46 E-value=0.002 Score=57.84 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=26.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.|+||+||||+++.+++.++ ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT--CCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEC
Confidence 489999999999999999999998 777654
No 213
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.44 E-value=0.0015 Score=59.55 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFV 189 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i 189 (558)
..++|.|+||+||||+++.+++.++ ..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~--~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP--GSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST--TCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCEE
Confidence 4689999999999999999999998 6665
No 214
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.43 E-value=0.0025 Score=60.84 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC--VCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CceecH
Confidence 5699999999999999999999998 776654
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.42 E-value=0.0022 Score=60.93 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE--LKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS--SEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CeEEec
Confidence 5699999999999999999999998 776654
No 216
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.41 E-value=0.0064 Score=62.54 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=48.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEecccc-----------------cHHHHHHHHHHHHHhhhhcCCce
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSAVTS-----------------GVKDVRDAVEDARKLRVKSNKRT 219 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~ 219 (558)
..++|.||+|+||||++++++..+.. ...++.+..... ....+...+..+ ....+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~-----L~~~pd 211 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA-----LREDPD 211 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH-----TTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH-----hhhCcC
Confidence 56999999999999999999987652 233322221000 001122222222 123678
Q ss_pred EEEEeCCccCCHHHHHHHHhhHhcCcEE
Q 008664 220 VLFVDEVHRFNKSQQDSFLPVIEDGSIV 247 (558)
Q Consensus 220 il~IDEid~l~~~~~~~Ll~~le~~~ii 247 (558)
+|++||+- +......++...+.|..+
T Consensus 212 ~illdE~~--d~e~~~~~l~~~~~g~~v 237 (372)
T 2ewv_A 212 VIFVGEMR--DLETVETALRAAETGHLV 237 (372)
T ss_dssp EEEESCCC--SHHHHHHHHHHHTTTCEE
T ss_pred EEEECCCC--CHHHHHHHHHHHhcCCEE
Confidence 99999996 455555555666656654
No 217
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.41 E-value=0.0022 Score=59.16 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=27.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG--FTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT--CEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC--CeEEcH
Confidence 5699999999999999999999998 766654
No 218
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.41 E-value=0.0021 Score=60.69 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG--LAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--ceEEeh
Confidence 4689999999999999999999998 777654
No 219
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.41 E-value=0.0023 Score=57.91 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=26.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..++|.||+|+||||+++.++..++ ..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH--AAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT--CEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC--cEEEe
Confidence 4689999999999999999999987 66554
No 220
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.38 E-value=0.0022 Score=58.69 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=27.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.+++.++ ..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG--WVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC--CEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CeEeeH
Confidence 4689999999999999999999998 666654
No 221
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.35 E-value=0.0026 Score=59.14 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.|++.++ ..++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS--CEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--ceEEeH
Confidence 4589999999999999999999988 666654
No 222
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=96.35 E-value=0.0056 Score=42.88 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.7
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHh
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILS 37 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~ 37 (558)
++++|++|||+.+-+.+||..++| +++-|.+-+++
T Consensus 14 ~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLle 48 (52)
T 2ooa_A 14 KIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILRE 48 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 478999999999999999999988 77888877764
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.34 E-value=0.0057 Score=63.99 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+||||++..+|..+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999997763
No 224
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.34 E-value=0.0022 Score=60.71 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
...++|.|+||+||||+++.|++.++ ..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ--LAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC--CEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--Cceec
Confidence 35699999999999999999999998 65554
No 225
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.32 E-value=0.028 Score=59.98 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=43.9
Q ss_pred eEEEEeCCccCCHH----HHHHHHhhHhcC---cEEEEeccCCCCCCCCcHHhhccc-ceeeccCCCHHHHHHHHHH
Q 008664 219 TVLFVDEVHRFNKS----QQDSFLPVIEDG---SIVFIGATTENPSFHLITPLLSRC-RVLTLNPLKPHDVEILLKR 287 (558)
Q Consensus 219 ~il~IDEid~l~~~----~~~~Ll~~le~~---~iilI~att~n~~~~l~~aL~sR~-~~i~~~~l~~~~i~~iL~~ 287 (558)
.+|+|||.+.+... ..+.|..+...+ .+.+|.+|.......+...+++.| ..+.|.--+..+.+.++..
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 58999999866432 233333343433 466776664332245777777777 4677887888888877754
No 226
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.30 E-value=0.019 Score=57.33 Aligned_cols=84 Identities=14% Similarity=0.263 Sum_probs=48.0
Q ss_pred HHHHHHHH----cCCC-CeEEEEcCCCchHHHHHHHHHHHhCC---CceEEEEeccccc-------------------HH
Q 008664 147 SLLRSAVC----SNRL-PSIIFWGPPGTGKTTLAKAIVNSVAV---SYKFVCLSAVTSG-------------------VK 199 (558)
Q Consensus 147 ~~l~~~i~----~~~~-~~~LL~GppGtGKTtLa~~la~~l~~---~~~~i~l~~~~~~-------------------~~ 199 (558)
..|-.++. .+-. ..++|+||||+|||+|+..++..... ...++.+++...- ..
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~ 91 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQ 91 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCC
Confidence 45556665 3322 35799999999999998777655421 2455666553220 00
Q ss_pred HHHHH-HHHHHHhh-hhcCCceEEEEeCCccCC
Q 008664 200 DVRDA-VEDARKLR-VKSNKRTVLFVDEVHRFN 230 (558)
Q Consensus 200 ~i~~~-~~~~~~~~-~~~~~~~il~IDEid~l~ 230 (558)
...++ ++.+.... .....+.+||||-|..+.
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 11222 22221110 133578999999998874
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.30 E-value=0.0019 Score=59.33 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=26.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|.||||+||||+++.|+...+ ...+.++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~--~g~i~i~ 41 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPG--VPKVHFH 41 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSS--SCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHhccC--CCeEEEc
Confidence 4689999999999999999998755 4555554
No 228
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.27 E-value=0.0017 Score=59.46 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 229
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.0097 Score=62.16 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
...++|+|+||+||||+++.+++.++ ..++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGT--CEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcC--cEEEcc
Confidence 35689999999999999999999887 655543
No 230
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.25 E-value=0.0028 Score=59.65 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=26.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.|+||+||||+++.|++.++ ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g--~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG--IPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeH
Confidence 489999999999999999999998 666654
No 231
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.25 E-value=0.0017 Score=59.56 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.++|.|+||+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999886
No 232
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.25 E-value=0.0055 Score=63.07 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCCccCCH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEVHRFNK 231 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEid~l~~ 231 (558)
...++|+||||+||||+++.++...+ ..++.+........ ..+. ..-...++++||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~--g~~~~~~~~~~~~~---~~lg-------~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCG--GKALNVNLPLDRLN---FELG-------VAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC--CEEECCSSCTTTHH---HHHG-------GGTTCSCEEETTCCCSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC--CcEEEEeccchhHH---HHHH-------HhcchhHHHHHHHHHHHH
Confidence 35799999999999999999999887 55544332222211 1111 111345679999997653
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.24 E-value=0.011 Score=61.99 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+..++|.|++|+||||++..+|..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999998764
No 234
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.22 E-value=0.0031 Score=59.61 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..+.|.||+|+||||+++.|++.++ ..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ--WHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--CEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCccc
Confidence 4689999999999999999999988 66654
No 235
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.22 E-value=0.0031 Score=63.27 Aligned_cols=34 Identities=29% Similarity=0.662 Sum_probs=29.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
..++|+||+|+||||+++.||+.++ ..++..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP--CELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence 3689999999999999999999998 788887653
No 236
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.20 E-value=0.003 Score=58.43 Aligned_cols=28 Identities=29% Similarity=0.638 Sum_probs=24.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFV 189 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i 189 (558)
.++|.|++|+||||+++.|++.++ ..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~--~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG--YEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC--CEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcC--CcEE
Confidence 478999999999999999999998 5544
No 237
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.19 E-value=0.0033 Score=60.63 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+...++|.||||+||||+++.|++.++ ..++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecH
Confidence 345799999999999999999999988 6666543
No 238
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.18 E-value=0.0037 Score=57.29 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=27.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh---CCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l---~~~~~~i~l~~ 193 (558)
.++|.|++|+||||+++.+++.+ + ..++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 47899999999999999999988 6 67776653
No 239
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.17 E-value=0.013 Score=59.44 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhC-------CCceEEEEeccc
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVA-------VSYKFVCLSAVT 195 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~-------~~~~~i~l~~~~ 195 (558)
..|-.++..+-. ..++|+||||+|||+++..++.... .....+.++...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 444444432222 4689999999999999999998732 124666666654
No 240
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.16 E-value=0.0034 Score=59.56 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.++|.|+||+||||+++.|++.++ ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEch
Confidence 489999999999999999999998 666554
No 241
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.15 E-value=0.0025 Score=63.15 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=26.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..++|.||||+||||+++.+++.+. ..++.+++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4689999999999999999999885 23344443
No 242
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0044 Score=60.05 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=28.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..++|.|++|+||||+++.|++.++ ..++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCc
Confidence 5699999999999999999999999 7777643
No 243
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.04 E-value=0.0046 Score=56.89 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCCceEEEEec
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLSA 193 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l---~~~~~~i~l~~ 193 (558)
+.|.|++|+||||+++.+++.+ + ..++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g--~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCC--C-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEeeC
Confidence 7899999999999999999998 6 66665543
No 244
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.04 E-value=0.0032 Score=58.66 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.++|.|+||+||||+++.|++.++
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999987
No 245
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.02 E-value=0.011 Score=65.39 Aligned_cols=54 Identities=30% Similarity=0.476 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHH-HHHHHHhCCCceEEEEecccccHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLA-KAIVNSVAVSYKFVCLSAVTSGVKDVR 202 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa-~~la~~l~~~~~~i~l~~~~~~~~~i~ 202 (558)
..+..++... +-.||+||||||||+++ ..|+..+.....++.+..+...++.+.
T Consensus 196 ~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~ 250 (646)
T 4b3f_X 196 EAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLV 250 (646)
T ss_dssp HHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHH
Confidence 3445555433 46899999999999754 445544444466666666555554443
No 246
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.02 E-value=0.012 Score=41.42 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=34.1
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++++|++|||+.+-+.+||..++| +++-|.+-|++....
T Consensus 12 ~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~~ 50 (53)
T 2d9s_A 12 EIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSGP 50 (53)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhccc
Confidence 468999999999999999999988 789999988776554
No 247
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.01 E-value=0.0052 Score=55.86 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=27.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh---CCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l---~~~~~~i~l~ 192 (558)
..++|.|++|+||||+++.++..+ + .+++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCC--CcEEEEC
Confidence 358899999999999999999987 6 6677665
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.99 E-value=0.0054 Score=58.68 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=27.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+.|.||+|+||||+++.|++.++ ..++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG--ARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCcccC
Confidence 4699999999999999999999998 766553
No 249
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.98 E-value=0.025 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.5
Q ss_pred CeEEEEcCCCchHHHHHHH-HHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA-IVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~-la~~ 181 (558)
.++++.+|+|+|||..+-. +...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 5799999999999987443 3344
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.96 E-value=0.024 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|+||||+|||+++..++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998763
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.95 E-value=0.0054 Score=56.82 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=28.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh-CCCceEEEEecc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVCLSAV 194 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~l~~~ 194 (558)
..++|.|++|+||||+++.|++.+ + .+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g--~~~~~~~~~ 39 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPA--NTIKYLNFP 39 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCG--GGEEEEESS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCC--CceEEEecC
Confidence 468999999999999999999998 4 566666543
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.92 E-value=0.0036 Score=60.68 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|+||+||||+++.|++.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999987
No 253
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.92 E-value=0.0055 Score=59.62 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=25.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH---hCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS---VAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~---l~~~~~~i~l 191 (558)
..++|.|+||+||||+++.+++. .+ ..++.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g--~~~i~~ 38 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNN--IDVIVL 38 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCC--CEEEEE
Confidence 46899999999999999999998 45 566534
No 254
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.90 E-value=0.0052 Score=57.06 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=26.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+.|.|++|+||||+++.|++ ++ ..++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT--CEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC--CEEEEcc
Confidence 588999999999999999999 77 7776654
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.88 E-value=0.0047 Score=57.60 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||||+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5699999999999999999999875
No 256
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.87 E-value=0.006 Score=56.62 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=27.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+.|.|++|+||||+++.+++.++ ..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--Cceeccc
Confidence 688999999999999999999998 7776543
No 257
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.84 E-value=0.004 Score=62.78 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=29.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
..++|.||+|+|||+|+..||+.++ ..++..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC--CcEEccccc
Confidence 4699999999999999999999998 777766553
No 258
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.84 E-value=0.0095 Score=63.02 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=53.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHH------------------------------HHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRD------------------------------AVEDA 208 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~------------------------------~~~~~ 208 (558)
..+++.+|+|+|||..+-.++...+ ...+.+.....-..++.. ++...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~--~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~ 186 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELS--TPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHC--SCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCCSEEEEEHHHHHHTH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC--CCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCCcCCEEEEEcHHHHHHH
Confidence 4699999999999999988887776 444444433111111111 11111
Q ss_pred HHhhhhcCCceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 209 RKLRVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 209 ~~~~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
.. .....++|||||+|.+.......++..+....++++.+|
T Consensus 187 ~~---~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSAT 227 (472)
T 2fwr_A 187 EK---LGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTAT 227 (472)
T ss_dssp HH---HTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEESC
T ss_pred HH---hcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEecC
Confidence 11 113468999999999876555555555554555555555
No 259
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.83 E-value=0.031 Score=59.66 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=54.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEecccccHHHHHHHHHHHHHh-------------------------
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVTSGVKDVRDAVEDARKL------------------------- 211 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~~~~~~i~~~~~~~~~~------------------------- 211 (558)
...+++||+|+|||..+-.++...- ....++.+.....-..++.+.+......
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~ 208 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVV 208 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccccccCCcEE
Confidence 5799999999999999877666531 1125555554433222222222221000
Q ss_pred -----------hhhcCCceEEEEeCCccCCHHHHHHHHhhHhcC-cEEEEecc
Q 008664 212 -----------RVKSNKRTVLFVDEVHRFNKSQQDSFLPVIEDG-SIVFIGAT 252 (558)
Q Consensus 212 -----------~~~~~~~~il~IDEid~l~~~~~~~Ll~~le~~-~iilI~at 252 (558)
.......++|||||+|++.......++..+... .++.+.+|
T Consensus 209 i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 209 VGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp EEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESC
T ss_pred EEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeC
Confidence 001224589999999999987766666666443 34444444
No 260
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.83 E-value=0.0044 Score=59.68 Aligned_cols=26 Identities=35% Similarity=0.701 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
...++|.||+|+||||+++.|++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999987
No 261
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.78 E-value=0.0048 Score=56.36 Aligned_cols=25 Identities=12% Similarity=0.506 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 262
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=95.76 E-value=0.011 Score=41.65 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=33.5
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
++++|++|||+.+-+.+||..+++ .++-|.+-|++-...
T Consensus 10 ~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 10 EIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVSI 48 (56)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHcc
Confidence 468999999999999999999988 678888888766554
No 263
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.74 E-value=0.0056 Score=57.02 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=24.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.+.|.||+|+||||+++.++. ++ ..++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg--~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG--VPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC--Ccccch
Confidence 478999999999999999988 67 666653
No 264
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.69 E-value=0.0043 Score=57.89 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|+||+||||+++.|++.++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 265
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.66 E-value=0.0079 Score=58.22 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..+.|.||+|+||||+++.|++.++ ..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN--WRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT--CEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC--CCcCC
Confidence 4689999999999999999999998 66554
No 266
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.66 E-value=0.044 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4588999999999999999998775
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.62 E-value=0.0061 Score=55.90 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.++|.||+|+||||+++.|+....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998654
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.59 E-value=0.0068 Score=56.79 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+||||+++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999999875
No 269
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.59 E-value=0.0062 Score=56.83 Aligned_cols=25 Identities=24% Similarity=0.439 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|++|+||||+++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999875
No 270
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.58 E-value=0.027 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=18.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++++.+|+|+|||..+-..+...
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 569999999999998766555443
No 271
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.58 E-value=0.0094 Score=55.25 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=27.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+.|+|++|+||||+++.+++.++ .+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg--~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG--AHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC--CEEEECc
Confidence 488999999999999999999988 7777644
No 272
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.57 E-value=0.025 Score=59.69 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHcCC--CCeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEec
Q 008664 147 SLLRSAVCSNR--LPSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSA 193 (558)
Q Consensus 147 ~~l~~~i~~~~--~~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~ 193 (558)
..|-..+ .+- ...++|.|+||+|||+++..++.... ...+++.++.
T Consensus 191 ~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 191 TELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred HHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5566655 332 25699999999999999999988653 1235555554
No 273
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.55 E-value=0.048 Score=64.26 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=25.2
Q ss_pred CceEEEEeCCccCCHHHHHHHHhhHhcCcEEEEecc
Q 008664 217 KRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGAT 252 (558)
Q Consensus 217 ~~~il~IDEid~l~~~~~~~Ll~~le~~~iilI~at 252 (558)
.-++|||||+|++.......|...-....++++.||
T Consensus 725 ~l~lvIiDEaH~~g~~~~~~l~~l~~~~~vl~lSAT 760 (1151)
T 2eyq_A 725 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 760 (1151)
T ss_dssp SEEEEEEESGGGSCHHHHHHHHHHHTTSEEEEEESS
T ss_pred ccceEEEechHhcChHHHHHHHHhcCCCCEEEEcCC
Confidence 457999999999987766665554444455555555
No 274
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.54 E-value=0.055 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+....
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4588999999999999999998765
No 275
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=95.52 E-value=0.021 Score=38.74 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcC
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKS 40 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~ 40 (558)
+.++|++|||+.+-+.|||..+++ +++.|.+-+++...
T Consensus 7 ~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~~ 44 (46)
T 2oo9_A 7 EIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFAA 44 (46)
T ss_dssp HHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhcc
Confidence 467999999999999999999988 78888888776543
No 276
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.52 E-value=0.0081 Score=55.49 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=26.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.|++|+||||+++.|++. + ..++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-G--YPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-C--CEEEccc
Confidence 46899999999999999999998 6 7776543
No 277
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.48 E-value=0.0081 Score=59.76 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=27.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..++|.||+|+|||+|+..+|+.++ ..++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP--VELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC--CcEEeccc
Confidence 4588999999999999999999988 66665543
No 278
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.47 E-value=0.051 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++++.+|+|+|||..+-..+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 579999999999999876555443
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.46 E-value=0.057 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+||||++..+|..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998764
No 280
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.45 E-value=0.033 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.7
Q ss_pred CeEEEEcCCCchHHHHH-HHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLA-KAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa-~~la~~l 182 (558)
.++++.+|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 56999999999999873 3334433
No 281
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.44 E-value=0.041 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4588999999999999999998764
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.43 E-value=0.0075 Score=55.86 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999864
No 283
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.43 E-value=0.012 Score=55.03 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=26.9
Q ss_pred HHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 149 LRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 149 l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+..........++|.|++|+||||+++.|++.++
T Consensus 16 ~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 16 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33334444446789999999999999999999764
No 284
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.42 E-value=0.0076 Score=55.11 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|++|+||||+++.++..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.40 E-value=0.0081 Score=59.85 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=27.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
+.++|.||+|+|||+|+..+|+.++ ..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc--cceeecCc
Confidence 3578999999999999999999988 66655443
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.40 E-value=0.031 Score=68.41 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccccc----------------------HHHHHHHHHHHHHhhhh
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTSG----------------------VKDVRDAVEDARKLRVK 214 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~~----------------------~~~i~~~~~~~~~~~~~ 214 (558)
..+++|+||||||||+|+..++.+.. .....+.++....- .+....+.+... .
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~----~ 1156 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA----R 1156 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH----H
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHH----H
Confidence 37899999999999999999886542 22344444433221 011222222222 2
Q ss_pred cCCceEEEEeCCccCC
Q 008664 215 SNKRTVLFVDEVHRFN 230 (558)
Q Consensus 215 ~~~~~il~IDEid~l~ 230 (558)
...+.+|+||++..+.
T Consensus 1157 ~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HTCCSEEEESCGGGCC
T ss_pred hCCCCEEEECCccccc
Confidence 3478999999999884
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.38 E-value=0.0066 Score=56.27 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999999873
No 288
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.38 E-value=0.0093 Score=60.23 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=27.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
.++|.||+|+||||++..|++.++ ..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN--GEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT--EEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC--Cceecccc
Confidence 589999999999999999999998 66666554
No 289
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.38 E-value=0.054 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 4689999999999999999998775
No 290
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.37 E-value=0.054 Score=54.13 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEec
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSA 193 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~ 193 (558)
..|-.++ .+-. ..++|.|+||+|||+++..++.... ...+++.++.
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 5555555 3322 4699999999999999999986653 2245555554
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.33 E-value=0.0089 Score=54.82 Aligned_cols=24 Identities=42% Similarity=0.699 Sum_probs=21.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998864
No 292
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.30 E-value=0.012 Score=55.37 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=25.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+.|.|++|+||||+++.|++ ++ ..++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LG--INVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TT--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC--CEEEEc
Confidence 3589999999999999999998 77 776654
No 293
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.26 E-value=0.013 Score=54.99 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=27.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+.|.|++|+||||+++.+++.++ ..++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS--MIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT--CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CceecC
Confidence 3589999999999999999999998 777654
No 294
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.26 E-value=0.016 Score=55.26 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+.|.|++|+||||+++.|++.++ ..++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG--FTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC--CEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC--CceecC
Confidence 5689999999999999999999998 766653
No 295
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.25 E-value=0.054 Score=49.92 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.5
Q ss_pred CeEEEEcCCCchHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~ 176 (558)
.++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 296
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.22 E-value=0.087 Score=59.38 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHH
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..+..++..+ ..+++.||+|+|||+++..+...
T Consensus 100 ~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 100 DEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 5556666655 57999999999999977666443
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.21 E-value=0.011 Score=55.01 Aligned_cols=25 Identities=16% Similarity=0.545 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+|||||++.|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999998864
No 298
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.20 E-value=0.021 Score=64.28 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=27.3
Q ss_pred cccccCCchHHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHH
Q 008664 138 GQDHLLSPNSLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 138 Gq~~~i~~~~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~ 180 (558)
.|..++ ..+..-+..+...++++.||+|+|||..+-..+-
T Consensus 372 ~Q~~ai---~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAH---QEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHH---HHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHH---HHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 344444 4454445555557899999999999998765443
No 299
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.17 E-value=0.069 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.++++.+|+|+|||..+-..+-..+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~ 56 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELG 56 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhc
Confidence 5799999999999997766655544
No 300
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.16 E-value=0.011 Score=57.21 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
...+.|.|++|+||||+++.|++.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35689999999999999999999988
No 301
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.15 E-value=0.011 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999998764
No 302
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.08 E-value=0.05 Score=55.66 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
++...++|.||+|+|||+|++.|++.+
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 444789999999999999999999876
No 303
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.08 E-value=0.061 Score=54.66 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHcCCCCeEEEEcCCCchHHHHHHHHH
Q 008664 152 AVCSNRLPSIIFWGPPGTGKTTLAKAIV 179 (558)
Q Consensus 152 ~i~~~~~~~~LL~GppGtGKTtLa~~la 179 (558)
.+..+...++++.+|+|+|||..+-..+
T Consensus 38 ~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 38 LLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp HHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred HHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 3334444789999999999998765443
No 304
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.06 E-value=0.011 Score=55.11 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=25.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh-CCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV-AVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l-~~~~~~i~l~ 192 (558)
..+.|.|++|+||||+++.|++.+ + ..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCC
Confidence 358899999999999999999987 4 4444433
No 305
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.04 E-value=0.013 Score=57.93 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=23.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh-CCCceEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV-AVSYKFV 189 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l-~~~~~~i 189 (558)
.++|.|+||+||||+++.+++.+ + ..++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~--~~~i 32 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPG--FYNI 32 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC--cEEe
Confidence 58999999999999999999974 5 4444
No 306
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.03 E-value=0.083 Score=49.65 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.8
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||..+..
T Consensus 58 ~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986443
No 307
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.99 E-value=0.01 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=22.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999875
No 308
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.99 E-value=0.062 Score=64.97 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=44.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc----------------------cHHHHHHHHHHHHHhhhhc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS----------------------GVKDVRDAVEDARKLRVKS 215 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~----------------------~~~~i~~~~~~~~~~~~~~ 215 (558)
..++|+||||||||++|..++...- ....++.++.... ..+.+..+++.... .
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~----~ 110 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR----S 110 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH----H
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh----c
Confidence 6799999999999999999886531 1244555544332 12233344433322 2
Q ss_pred CCceEEEEeCCccCCH
Q 008664 216 NKRTVLFVDEVHRFNK 231 (558)
Q Consensus 216 ~~~~il~IDEid~l~~ 231 (558)
.+..+||||++..+..
T Consensus 111 ~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 111 GAVDVIVVDSVAALTP 126 (1706)
T ss_dssp TCCSEEEESCSTTCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 4678999999997754
No 309
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.98 E-value=0.083 Score=49.95 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.5
Q ss_pred CeEEEEcCCCchHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~ 176 (558)
.++++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 579999999999998643
No 310
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.96 E-value=0.081 Score=55.32 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.4
Q ss_pred CeEEEEcCCCchHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLA 175 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa 175 (558)
.++++.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57999999999999975
No 311
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.92 E-value=0.3 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|.|.||+|||||+..|...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999998754
No 312
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.91 E-value=0.035 Score=55.07 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCchHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLA 175 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa 175 (558)
..++++.+|+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 368999999999999764
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.91 E-value=0.0079 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 314
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.017 Score=65.71 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=37.1
Q ss_pred hHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 3 MEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 3 ~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
|+||++|||+...+++++..+|+...+.|++|+++|...
T Consensus 656 l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd 694 (854)
T 3ihp_A 656 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 694 (854)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCc
Confidence 689999999999999999999999999999999999765
No 315
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.85 E-value=0.035 Score=56.11 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=27.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEeccc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVT 195 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~ 195 (558)
.-++|.|+||+|||+++..+|.... ...+++.++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4699999999999999999987753 225566665543
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.85 E-value=0.17 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.+++.|++|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998654
No 317
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.099 Score=58.36 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCceEEEEeCCccCCH----HHHHHHHhhHhcCcEEEEeccCCC
Q 008664 216 NKRTVLFVDEVHRFNK----SQQDSFLPVIEDGSIVFIGATTEN 255 (558)
Q Consensus 216 ~~~~il~IDEid~l~~----~~~~~Ll~~le~~~iilI~att~n 255 (558)
...++|||||+|.+.. ...+.++..+..-++++..||-.|
T Consensus 144 ~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n 187 (715)
T 2va8_A 144 NEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISN 187 (715)
T ss_dssp GGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT
T ss_pred hccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC
Confidence 3568999999999752 234444444445566666666443
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.82 E-value=0.013 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999999876
No 319
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.78 E-value=0.075 Score=59.26 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.8
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.||+|+|||+.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 6799999999999998743
No 320
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.78 E-value=0.047 Score=52.07 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.0
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||.....
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 5799999999999987543
No 321
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.76 E-value=0.021 Score=62.23 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 668999999999999987777654
No 322
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.75 E-value=0.033 Score=50.91 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=34.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHHHhhhhcCCceEEEEeCC
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDARKLRVKSNKRTVLFVDEV 226 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~il~IDEi 226 (558)
++++|++|+|||++|..++.. + .+.+.+........+.++-+...+.. .......+++-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~--~~~~yiaT~~~~d~e~~~rI~~h~~~----R~~~w~tiE~p 60 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A--PQVLYIATSQILDDEMAARIQHHKDG----RPAHWRTAECW 60 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C--SSEEEEECCCC------CHHHHHHHT----SCTTEEEECCS
T ss_pred EEEECCCCCcHHHHHHHHHhc-C--CCeEEEecCCCCCHHHHHHHHHHHhc----CCCCcEEEEcH
Confidence 789999999999999999977 5 55666655443233344434444332 12345555553
No 323
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.74 E-value=0.019 Score=56.43 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=25.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+.|+|++|+||||+++.|+ .++ ..++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg--~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLG--AYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHT--CEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCC--CcEEeh
Confidence 458999999999999999999 577 666654
No 324
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.71 E-value=0.09 Score=49.92 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=15.9
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||..+-.
T Consensus 68 ~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCEEECCCSSHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHH
Confidence 5699999999999976443
No 325
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.69 E-value=0.021 Score=53.19 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..+.|.|++|+||||+++.||+.++ ++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg--~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN--IPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT--CCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC--cCEEC
Confidence 4689999999999999999999999 88875
No 326
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.68 E-value=0.039 Score=52.15 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.1
Q ss_pred CeEEEEcCCCchHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLA 175 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa 175 (558)
.++++.+|+|+|||...
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 57999999999999864
No 327
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.67 E-value=0.016 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.559 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999874
No 328
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.22 Score=57.71 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=50.6
Q ss_pred CeEEEEcCCCchHHHHHHHHH-HHhCCCceEEEEecccc----------------------------------cHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIV-NSVAVSYKFVCLSAVTS----------------------------------GVKDVRD 203 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la-~~l~~~~~~i~l~~~~~----------------------------------~~~~i~~ 203 (558)
.++++.+|+|+|||.++.... ..+......+.+..... +.+.+..
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~ 181 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS 181 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHH
Confidence 579999999999999875433 32222234444443211 1112222
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCccCC----HHHHHHHHhhHhc-CcEEEEeccCCC
Q 008664 204 AVEDARKLRVKSNKRTVLFVDEVHRFN----KSQQDSFLPVIED-GSIVFIGATTEN 255 (558)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~IDEid~l~----~~~~~~Ll~~le~-~~iilI~att~n 255 (558)
.+.. .......-.+|||||+|.+. ....+.++..+.. .+++++.||-.|
T Consensus 182 ~L~~---~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 182 MLYR---GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp HHHH---TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTT
T ss_pred HHHc---CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCC
Confidence 2211 11122355799999999884 3344455555543 456666666444
No 329
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.64 E-value=0.017 Score=54.58 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+.|.||+|+|||||++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999976
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.64 E-value=0.017 Score=55.00 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV 184 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~ 184 (558)
.-++|.|+||+||||+++.|++.+..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35889999999999999999999863
No 331
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.63 E-value=0.059 Score=50.42 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.9
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999986443
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.61 E-value=0.11 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
+....+.|+|+||+||||++..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999999876
No 333
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.60 E-value=0.054 Score=56.94 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEeccc
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVT 195 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~ 195 (558)
..|-..+ .+-. ..++|.|+||+|||+++..++.... ...+++.++...
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5666666 4332 4689999999999999999987653 234566666543
No 334
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.56 E-value=0.019 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.524 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||++.|+..+.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999999874
No 335
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.53 E-value=0.019 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999998865
No 336
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.51 E-value=0.02 Score=58.96 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.++|.||+|+|||+|+..|++.++ ..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~--~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN--GEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT--EEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCC--CeEeecC
Confidence 578999999999999999999998 6655443
No 337
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=94.51 E-value=0.032 Score=38.94 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=26.7
Q ss_pred hHHHHhcCCCHH--HHHHHHHHhCCccHHHHHHHHH
Q 008664 3 MEQLLSMGFPDE--LAAEALAATGGKSTLKATEWIL 36 (558)
Q Consensus 3 ~~~~~~~g~~~~--~~~~al~~~g~~~~~~~~~w~~ 36 (558)
|+||++|||.++ -.++.|...++ .+-+++|-+.
T Consensus 14 l~qMl~MGF~negGWLt~LL~~k~g-DI~~aLD~lq 48 (52)
T 1q02_A 14 LSQMLSMGFSDEGGWLTRLLQTKNY-DIGAALDTIQ 48 (52)
T ss_dssp HHHHHTTTCCCTTSHHHHHHHHTTT-CHHHHHHHHT
T ss_pred HHHHHHcCCCccccHHHHHHHHccC-CHHHHHHHhh
Confidence 789999999986 67788988888 5677877553
No 338
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.49 E-value=0.1 Score=58.79 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|+||.|+||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999865
No 339
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.49 E-value=0.1 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.|++|+||||++..+|..+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577889999999999999998764
No 340
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.38 E-value=0.052 Score=50.88 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++......+...++|.|.+|+|||||+..++....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4555555556667899999999999999999998865
No 341
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.34 E-value=0.038 Score=60.39 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh---CCCceEEEEe
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSV---AVSYKFVCLS 192 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l---~~~~~~i~l~ 192 (558)
...++|.|.||+||||+++.|++.+ + ..++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G--~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEec
Confidence 3468999999999999999999998 6 6677664
No 342
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.045 Score=51.14 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..++......+.+.++|.|++|+|||||+..++..+........+
T Consensus 19 ~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i 63 (221)
T 2wsm_A 19 EKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63 (221)
T ss_dssp HHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 455555555566889999999999999999999886533333333
No 343
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.30 E-value=0.075 Score=59.65 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|+||.|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46899999999999999999864
No 344
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.29 E-value=0.065 Score=53.91 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
+...+.|.||+|+||||+++.|+..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998874
No 345
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.22 E-value=0.051 Score=52.21 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=15.6
Q ss_pred CeEEEEcCCCchHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~ 176 (558)
.++++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998644
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.22 E-value=0.029 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 46789999999999999999998863
No 347
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.21 E-value=0.046 Score=52.08 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.0
Q ss_pred CeEEEEcCCCchHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLA 175 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa 175 (558)
.++++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 348
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.18 E-value=0.19 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=20.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++|.|++|+|||||+..+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 349
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.17 E-value=0.019 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+|||+||..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4599999999999999999998754
No 350
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.16 E-value=0.031 Score=57.11 Aligned_cols=43 Identities=33% Similarity=0.546 Sum_probs=31.4
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
.+.-.+..+ ..++|.||+|+||||++++|+..+......+.+.
T Consensus 167 ~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 167 FLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 344444444 5699999999999999999999886444445444
No 351
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.15 E-value=0.16 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999888776654
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.12 E-value=0.024 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+.|.|++|+||||+++.|+..+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999876
No 353
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.12 E-value=0.15 Score=51.79 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred CeEEEEcCCCchHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~ 176 (558)
.++++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998743
No 354
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.09 E-value=0.038 Score=55.03 Aligned_cols=36 Identities=25% Similarity=0.148 Sum_probs=26.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecc
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAV 194 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~ 194 (558)
..+.|.||+|+||||+++.|+..+.....-+.+.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 568899999999999999999887533333344443
No 355
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.06 E-value=0.033 Score=52.97 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
.+-|.|+||+||||+++.|++.++ ..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG--IPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--CCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC--CCeeec
Confidence 477999999999999999999998 666644
No 356
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.04 E-value=0.065 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|.||+||||+++.+++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999999875
No 357
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.00 E-value=0.17 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
-.+.|.||+|+|||||++.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999997643
No 358
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.99 E-value=0.14 Score=49.47 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.9
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5699999999999986543
No 359
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.98 E-value=0.052 Score=58.12 Aligned_cols=44 Identities=30% Similarity=0.286 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+...+..+ .+++|.||+|+||||++++++..+..+...+.+.
T Consensus 251 ~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 251 AYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 3444445554 4699999999999999999999887555555544
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.97 E-value=0.029 Score=53.79 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+-|.||+|+||||+++.|+..++
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588999999999999999999876
No 361
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.96 E-value=0.13 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCchHHHHHHH-HHHHh
Q 008664 157 RLPSIIFWGPPGTGKTTLAKA-IVNSV 182 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~-la~~l 182 (558)
...++++.+|+|+|||..+-. +...+
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCccHHHHHHHHHHHHH
Confidence 347899999999999987443 44443
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.95 E-value=0.018 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=15.6
Q ss_pred CeEEEEcCCCchHHHHHHHHH-HHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIV-NSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la-~~l~ 183 (558)
..+.|.||+|+||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 458899999999999999999 7753
No 363
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.91 E-value=0.19 Score=56.12 Aligned_cols=18 Identities=28% Similarity=0.419 Sum_probs=16.4
Q ss_pred CeEEEEcCCCchHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~ 176 (558)
.++++.||+|+|||+.+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 689999999999999873
No 364
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.89 E-value=0.17 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=17.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
.++++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 4699999999999986654443
No 365
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.87 E-value=0.13 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
...+.|.||||+|||||.+.++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999765
No 366
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.84 E-value=0.039 Score=50.15 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.+.|.|++|+||||+++.+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46789999999999999999998753
No 367
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.74 E-value=0.25 Score=54.22 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=57.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccccHHHHHHHHHHHH------HhhhhcCCceEEEEeCCccCCHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTSGVKDVRDAVEDAR------KLRVKSNKRTVLFVDEVHRFNKS 232 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~~~~~i~~~~~~~~------~~~~~~~~~~il~IDEid~l~~~ 232 (558)
...+|+|++|.|||+++-.++..+. ...+....+......+.+...... ..........+|||||+-.+...
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~--~~~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAaIp~p 270 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIA--GRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAP 270 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSS--SCEEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGGSCHH
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHH--hCcEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhcCCHH
Confidence 5689999999999999999999887 344333444444444444322110 00012234689999999999887
Q ss_pred HHHHHHhhHhcCcEEEEeccCCCCC
Q 008664 233 QQDSFLPVIEDGSIVFIGATTENPS 257 (558)
Q Consensus 233 ~~~~Ll~~le~~~iilI~att~n~~ 257 (558)
....|+. ....+ +++||-+.+
T Consensus 271 ll~~ll~---~~~~v-~~~tTv~GY 291 (671)
T 2zpa_A 271 LLHQLVS---RFPRT-LLTTTVQGY 291 (671)
T ss_dssp HHHHHHT---TSSEE-EEEEEBSST
T ss_pred HHHHHHh---hCCeE-EEEecCCcC
Confidence 6555554 33334 444554554
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.73 E-value=0.031 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.|++|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999999876
No 369
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.4 Score=43.31 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
-.++|.|++|+|||||++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998765
No 370
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.69 E-value=0.043 Score=52.06 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=27.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVC 190 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~ 190 (558)
..+.|.|++||||||+++.||+.++ .+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELG--IHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT--CEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcC--CcEEc
Confidence 3589999999999999999999999 77765
No 371
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.65 E-value=0.16 Score=58.14 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
..++|+||.|+||||+.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4689999999999999999874
No 372
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.62 E-value=0.035 Score=55.25 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=23.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|+||+|+|||||++.|+..+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcC
Confidence 5789999999999999999999883
No 373
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.61 E-value=0.67 Score=41.69 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++|.|++|+|||+|++.+...-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998643
No 374
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.53 E-value=0.27 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=17.9
Q ss_pred HcCCCCeEEEEcCCCchHHHHHH
Q 008664 154 CSNRLPSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 154 ~~~~~~~~LL~GppGtGKTtLa~ 176 (558)
..+...++++.+|+|+|||..+-
T Consensus 60 ~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 60 LAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp HSSSCCCEEEECCTTSCHHHHHH
T ss_pred hcCCCCeEEEECCCCchHHHHHH
Confidence 33334689999999999998753
No 375
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.26 Score=57.78 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
.++|+.||+|+|||..+...+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHH
Confidence 6799999999999998755443
No 376
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.50 E-value=0.088 Score=42.90 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=34.3
Q ss_pred hHHHHhc-CCCHHHHHHHHHHhCCccHHHHHHHHHhhcC
Q 008664 3 MEQLLSM-GFPDELAAEALAATGGKSTLKATEWILSHKS 40 (558)
Q Consensus 3 ~~~~~~~-g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~ 40 (558)
+.+|++| ||+++-|+.||..+++ .+.+|++.||+..+
T Consensus 43 Vk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 43 VKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSS
T ss_pred HHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 6789999 9999999999999999 77999999999876
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.48 E-value=0.038 Score=54.65 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999886
No 378
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.46 E-value=0.32 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|.|++|+|||||+..|....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 569999999999999999998653
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.44 E-value=0.12 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|.|+||+||||++..|+..+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999776
No 380
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.42 E-value=0.15 Score=53.45 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCC--CeEEEEcCCCchHHHHHHHHHHHhC-CCceEEEEecccc
Q 008664 147 SLLRSAVCSNRL--PSIIFWGPPGTGKTTLAKAIVNSVA-VSYKFVCLSAVTS 196 (558)
Q Consensus 147 ~~l~~~i~~~~~--~~~LL~GppGtGKTtLa~~la~~l~-~~~~~i~l~~~~~ 196 (558)
..|-..+. +-. .-++|.|+||+|||+++..+|.... ...+++.++....
T Consensus 185 ~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 185 TELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp HHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred HHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 56666663 322 4699999999999999998887653 2356666665443
No 381
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.41 E-value=0.038 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 4688999999999999999999875
No 382
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.41 E-value=0.14 Score=51.96 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
.++++.+|+|+|||..+-..+-
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999987654443
No 383
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.41 E-value=0.037 Score=54.58 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||||+|||||++.++..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 384
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.34 E-value=0.041 Score=58.74 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=23.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|.+|+||||++++|++.++
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999998
No 385
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.32 E-value=0.39 Score=43.33 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~ 181 (558)
...++|.|++|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999754
No 386
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.26 E-value=0.071 Score=58.59 Aligned_cols=44 Identities=30% Similarity=0.436 Sum_probs=29.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEecccccHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVTSGVKDVR 202 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~~~~~~i~ 202 (558)
+..++.||||||||+++..+...+. ....++.+..+....+.+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~ 241 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHH
Confidence 5689999999999998877776653 2345555555444444443
No 387
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.25 E-value=0.23 Score=56.81 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~ 180 (558)
..++|+||.|+||||+.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999853
No 388
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.24 E-value=0.048 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999998765
No 389
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.24 E-value=0.25 Score=51.83 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=13.4
Q ss_pred CeEEEEcCCCchHHH
Q 008664 159 PSIIFWGPPGTGKTT 173 (558)
Q Consensus 159 ~~~LL~GppGtGKTt 173 (558)
..+++.||+|+|||+
T Consensus 20 ~~~lv~a~TGsGKT~ 34 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTK 34 (451)
T ss_dssp CEEEECCCTTSSCCT
T ss_pred CeEEEECCCCCCHhh
Confidence 457999999999998
No 390
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.19 E-value=0.046 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.|.||+|+||||+++.|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999999875
No 391
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.14 E-value=0.2 Score=52.73 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.7
Q ss_pred CCCCeEEEEcCCCchHHHHH
Q 008664 156 NRLPSIIFWGPPGTGKTTLA 175 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa 175 (558)
+...++++.||+|+|||...
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHH
T ss_pred CCCCcEEEEcCCCCchhHHH
Confidence 33478999999999999874
No 392
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.13 E-value=0.049 Score=51.24 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=25.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhCC-CceEEEE
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVAV-SYKFVCL 191 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~~-~~~~i~l 191 (558)
-++|.|++|+||||+++.+++.+.. ...++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4789999999999999999998852 2344433
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.12 E-value=0.049 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
...+|+||.|+||||++++|.-.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999999999998876
No 394
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.12 E-value=0.044 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+..+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4588999999999999999998765
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.11 E-value=0.058 Score=50.15 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
....++|.|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998865
No 396
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.04 E-value=0.043 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+..+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999987765
No 397
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.03 E-value=0.12 Score=49.49 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CeEEEEcCCCchHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~ 176 (558)
.++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 398
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.02 E-value=0.42 Score=42.88 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|.|++|+|||||+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999998765
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.00 E-value=0.049 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999998874
No 400
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.99 E-value=0.05 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.+.|.|++|+|||||++.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999763
No 401
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.99 E-value=0.4 Score=44.38 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|.|++|+|||||+..+...-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 569999999999999999998653
No 402
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.98 E-value=0.047 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.3
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.|.|++|+|||||++.++....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998653
No 403
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.97 E-value=0.069 Score=55.60 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 148 LLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 148 ~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+..++ ......++|.||+|+||||+.++++..+.
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 455554 33335689999999999999999999886
No 404
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.95 E-value=0.33 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=16.9
Q ss_pred CeEEEEcCCCchHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIV 179 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la 179 (558)
.++++.+|+|+|||..+-..+
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHH
Confidence 569999999999997665443
No 405
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.94 E-value=0.049 Score=51.28 Aligned_cols=25 Identities=44% Similarity=0.644 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||.++|+..+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3488999999999999999988765
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.87 E-value=0.049 Score=52.97 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=25.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+.|.||+|+|||||+++|+..+....-.+.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 458899999999999999999876533333333
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.84 E-value=0.043 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=19.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.-++|.|++|+||||+++.|++.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999884
No 408
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.83 E-value=0.052 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999765
No 409
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.80 E-value=0.055 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
+.+++.|++|+|||||++.+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 410
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.79 E-value=0.055 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
++.|.||+|+|||||.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998764
No 411
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.79 E-value=0.06 Score=54.97 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999986
No 412
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.76 E-value=0.21 Score=51.06 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=15.9
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||..+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 4699999999999987543
No 413
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.75 E-value=0.037 Score=51.85 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=22.7
Q ss_pred HHcCCCCeEEEEcCCCchHHHHHHHHHHH
Q 008664 153 VCSNRLPSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 153 i~~~~~~~~LL~GppGtGKTtLa~~la~~ 181 (558)
+..+ ..+.|.||.|+|||||+++|+..
T Consensus 19 i~~G--e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTN--TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHC--SEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCC--CEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 45889999999999999999976
No 414
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.75 E-value=0.044 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4589999999999999999998764
No 415
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.74 E-value=0.056 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|.|++|+||||+|..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46999999999999999999885
No 416
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.74 E-value=0.4 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=18.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++.+|+|+|||.....-+-..
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~ 64 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLL 64 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CCEEEECCCCcHHHHHHHHHHHHh
Confidence 479999999999998665544433
No 417
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=92.72 E-value=0.35 Score=52.92 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=25.0
Q ss_pred cCCceEEEEeCCccCCHHH---HHHHHhhHh--cCcEEEEeccCC
Q 008664 215 SNKRTVLFVDEVHRFNKSQ---QDSFLPVIE--DGSIVFIGATTE 254 (558)
Q Consensus 215 ~~~~~il~IDEid~l~~~~---~~~Ll~~le--~~~iilI~att~ 254 (558)
.....+|||||+|+++... ...++..+. +.+++++.||-.
T Consensus 275 l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~ 319 (618)
T 2whx_A 275 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP 319 (618)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred ccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence 3466899999999996543 334444443 245666666643
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.71 E-value=0.054 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.+.|.|++|+||||+++.|++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999984
No 419
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.68 E-value=0.059 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4588999999999999999998775
No 420
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.68 E-value=0.27 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.++..+.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4689999999999999999998875
No 421
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.64 E-value=0.056 Score=52.40 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=25.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||.|+|||||.++|+..+....--+.++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 4588999999999999999998775333334443
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.62 E-value=0.033 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=19.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999999765
No 423
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.60 E-value=0.057 Score=52.00 Aligned_cols=34 Identities=29% Similarity=0.272 Sum_probs=25.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||+|+|||||+++|+..+....--+.++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 4588999999999999999998775333333333
No 424
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.60 E-value=0.31 Score=53.61 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~ 193 (558)
..+++.||+|+|||+.+-...-.-+ ...+.+..
T Consensus 233 ~~vlv~ApTGSGKT~a~~l~ll~~g--~~vLVl~P 265 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVPAAYAAQG--YKVLVLNP 265 (666)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHHTT--CCEEEEES
T ss_pred CeEEEEeCCchhHHHHHHHHHHHCC--CeEEEEcc
Confidence 4699999999999976544333323 34444444
No 425
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.56 E-value=0.24 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.++....
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 5689999999999999999998875
No 426
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.53 E-value=0.21 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhh
Confidence 3688999999999999999998874
No 427
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.51 E-value=0.066 Score=54.29 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=25.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||+|+|||||.++|+.....+.--+.++
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 4588999999999999999998765333334443
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.51 E-value=0.065 Score=50.49 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV 184 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~ 184 (558)
.-++|.|++|+||||+++.+++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999999983
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.50 E-value=0.06 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=25.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||.|+|||||.++|+..+....--+.++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 4588999999999999999998765333334443
No 430
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.49 E-value=0.059 Score=52.42 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||+++|+..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4588999999999999999998765
No 431
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.48 E-value=0.063 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||.++|+..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4588999999999999999998775
No 432
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.43 E-value=0.064 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~ 181 (558)
.+.|.|++|+|||||.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.42 E-value=0.053 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.3
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~ 180 (558)
.++|.|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 434
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.41 E-value=0.26 Score=51.45 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=26.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCC--CceEEEEec
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAV--SYKFVCLSA 193 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~--~~~~i~l~~ 193 (558)
..++|.|++|+||||++..||..+.. ...+.-+++
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 56888999999999999999977641 245554444
No 435
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.41 E-value=0.062 Score=52.54 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=26.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||+|+|||||+++|+..+....--+.++
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~ 79 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 4588999999999999999998776333334443
No 436
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.40 E-value=0.066 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.||+|+||||++..+|..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHH
Confidence 4588999999999999999998764
No 437
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.40 E-value=0.061 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..+.|.||+|+|||||+++|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999985
No 438
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.39 E-value=0.071 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999998765
No 439
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.36 E-value=0.063 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4588999999999999999998765
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.36 E-value=0.062 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=23.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.|++|+||||++++|+..+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 5689999999999999999999986
No 441
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.35 E-value=0.5 Score=50.79 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCchHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLA 175 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa 175 (558)
...+++.+|+|+|||..+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 468999999999999853
No 442
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.35 E-value=0.067 Score=52.55 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=26.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||.|+|||||.++|+..+....--+.++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 81 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEEC
Confidence 4588999999999999999998776333334444
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.34 E-value=0.077 Score=50.23 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=24.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 155 SNRLPSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 155 ~~~~~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+..-+.|.|++|+||||+++.+++.+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33345688999999999999999999876
No 444
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.32 E-value=0.075 Score=46.70 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=21.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++.|++|+|||||++.+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 445
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.32 E-value=0.067 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.-++|.|++|+||||+++.+++.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.31 E-value=0.063 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=21.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+.|.||.|+|||||+++|+...
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999863
No 447
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.30 E-value=0.24 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||++.++..+.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 4689999999999999999998875
No 448
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.29 E-value=0.074 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4588999999999999999998765
No 449
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.28 E-value=0.074 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4588999999999999999998765
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.28 E-value=0.32 Score=48.08 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=21.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++.|++|+||||++..+|..+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999876
No 451
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.28 E-value=0.51 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|++|+||||++..+|..+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578889999999999999998874
No 452
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.24 E-value=0.07 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+||||+++.|+..+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3688999999999999999999874
No 453
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.24 E-value=0.055 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3588999999999999999998765
No 454
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.23 E-value=0.073 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|+|+||+|||+++..++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 45899999999999999877643
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.20 E-value=0.27 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 157 RLPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 157 ~~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
+...+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998765
No 456
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.19 E-value=0.28 Score=56.78 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.2
Q ss_pred CeEEEEcCCCchHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIV 179 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la 179 (558)
..++|+||.|+||||+.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 569999999999999999984
No 457
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.17 E-value=0.08 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.++|.|++|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988653
No 458
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.16 E-value=0.068 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999998765
No 459
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.16 E-value=0.078 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4588999999999999999998765
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.15 E-value=0.033 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.245 Sum_probs=22.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
.-++|.|++|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999999984
No 461
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.14 E-value=0.079 Score=54.26 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4588999999999999999998765
No 462
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.09 E-value=0.071 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||.++|+..+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999998765
No 463
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.098 Score=47.43 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
...++|.|++|+|||||+..+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998754
No 464
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.01 E-value=0.076 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|.|++|+|||||++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999998754
No 465
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.00 E-value=0.074 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..++|.|.||+||||+++.|++.++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3589999999999999999999884
No 466
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.99 E-value=0.061 Score=51.86 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=25.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+.|.||.|+|||||.++|+..+... --+.++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 458899999999999999999877633 334443
No 467
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.99 E-value=0.7 Score=49.99 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCchHHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLAK 176 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~ 176 (558)
...+++.+|+|+|||..+.
T Consensus 60 ~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHH
Confidence 3679999999999998533
No 468
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.98 E-value=0.086 Score=46.30 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.+++.|++|+|||||+..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 469
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.95 E-value=0.17 Score=51.25 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEE
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCL 191 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l 191 (558)
..+...+.-.+...+.|.||+|+|||||++.|+.....+.-.+.+
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 344444333444679999999999999999999998744433443
No 470
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=91.93 E-value=0.33 Score=51.12 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.7
Q ss_pred CeEEEEcCCCchHHHH
Q 008664 159 PSIIFWGPPGTGKTTL 174 (558)
Q Consensus 159 ~~~LL~GppGtGKTtL 174 (558)
.++++.+|+|+|||+.
T Consensus 22 ~~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRK 37 (459)
T ss_dssp CEEEECCCTTSCTTTT
T ss_pred CcEEEECCCCCCHHHH
Confidence 6799999999999996
No 471
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.93 E-value=0.089 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++.|++|+|||||++.+...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998653
No 472
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.92 E-value=0.063 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||+++|+..+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4589999999999999999987654
No 473
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.90 E-value=0.077 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||.++|+..+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999998765
No 474
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=91.86 E-value=0.53 Score=54.55 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.1
Q ss_pred CeEEEEcCCCchHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKA 177 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~ 177 (558)
.++++.+|+|+|||.++..
T Consensus 55 ~~vlv~apTGsGKTlv~~~ 73 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEY 73 (997)
T ss_dssp CEEEEECCTTSCSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHH
Confidence 5799999999999986443
No 475
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.83 E-value=0.14 Score=57.84 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=28.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC--CCceEEEEecccccHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA--VSYKFVCLSAVTSGVKDV 201 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~--~~~~~i~l~~~~~~~~~i 201 (558)
+..+|.||||||||+++..++..+. ....++.+..+....+.+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l 416 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 416 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHH
Confidence 5689999999999998877776653 224455444443333333
No 476
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.81 E-value=0.092 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.8
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.+++.|++|+|||||++.+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 477
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.78 E-value=0.092 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..++|.|++|+|||||+..+...-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 478
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.72 E-value=0.087 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=22.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHHhC
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
-+.|.|++|+||||+++.+++.+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999885
No 479
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.71 E-value=0.27 Score=58.83 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEecccc---------------------------------------cHHHH
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLSAVTS---------------------------------------GVKDV 201 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~~~~~---------------------------------------~~~~i 201 (558)
+-|+|++|+|||||++.|.+.+....--+.++..+. +.+++
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei 1187 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQV 1187 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHH
T ss_pred EEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHH
Q ss_pred -----------------------------------HHHHHHHHHhhhhcCCceEEEEeCCc-cCCHHHHHHHHhhHhc--
Q 008664 202 -----------------------------------RDAVEDARKLRVKSNKRTVLFVDEVH-RFNKSQQDSFLPVIED-- 243 (558)
Q Consensus 202 -----------------------------------~~~~~~~~~~~~~~~~~~il~IDEid-~l~~~~~~~Ll~~le~-- 243 (558)
++.+.-++... .++.||++||+- .++......+.+.+++
T Consensus 1188 ~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll---r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1188 EEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV---RNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH---SCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH---hCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Q ss_pred -CcEEEEec
Q 008664 244 -GSIVFIGA 251 (558)
Q Consensus 244 -~~iilI~a 251 (558)
++.+++.+
T Consensus 1265 ~~~TvI~IA 1273 (1321)
T 4f4c_A 1265 EGRTCIVIA 1273 (1321)
T ss_dssp SSSEEEEEC
T ss_pred CCCEEEEec
No 480
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.67 E-value=0.092 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~ 181 (558)
.+++.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 481
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.63 E-value=0.071 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||.|+|||||.++|+..+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999998765
No 482
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.60 E-value=0.099 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++.|++|+|||||++.+...-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 483
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.59 E-value=0.099 Score=46.56 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+++.|++|+|||||+..+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999987653
No 484
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.58 E-value=0.12 Score=45.94 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHHH
Q 008664 158 LPSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 158 ~~~~LL~GppGtGKTtLa~~la~~ 181 (558)
...++|.|++|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999764
No 485
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.58 E-value=0.1 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.1
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~ 181 (558)
.+++.|++|+|||||++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 486
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.57 E-value=0.11 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEcCCCchHHHHHHHHHHHh
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~l 182 (558)
.+++.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997653
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.57 E-value=0.09 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|.|++|+|||||++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 488
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.54 E-value=0.093 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.9
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~ 180 (558)
.++|.|++|+|||||++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 489
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.51 E-value=0.44 Score=48.69 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHHHh
Q 008664 156 NRLPSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 156 ~~~~~~LL~GppGtGKTtLa~~la~~l 182 (558)
++....+|.|++|+|||+|+..|++..
T Consensus 173 grGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 173 GKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp BTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cCCceEEEecCCCCChhHHHHHHHHHH
Confidence 455789999999999999999999875
No 490
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.50 E-value=0.59 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
+-+.|.|.||+|||||...+...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999998764
No 491
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.49 E-value=1.3 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..+.|.|.||+|||||...+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.47 E-value=0.16 Score=47.23 Aligned_cols=32 Identities=31% Similarity=0.597 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 161 IIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 161 ~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
+.|-|+.|+||||+++.|++.+.....++...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 67889999999999999999986445555443
No 493
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.45 E-value=0.085 Score=46.33 Aligned_cols=21 Identities=33% Similarity=0.741 Sum_probs=18.8
Q ss_pred eEEEEcCCCchHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVN 180 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~ 180 (558)
.++|.|++|+|||||++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998853
No 494
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.41 E-value=0.11 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.0
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~ 181 (558)
.++|.|++|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 495
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.41 E-value=0.11 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHH
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~ 181 (558)
..++|.|++|+|||||++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 496
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.41 E-value=0.091 Score=51.07 Aligned_cols=24 Identities=46% Similarity=0.753 Sum_probs=21.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHh
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSV 182 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l 182 (558)
..+.|.||.|+|||||.++|+..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998776
No 497
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.1 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEcCCCchHHHHHHHHHHH
Q 008664 160 SIIFWGPPGTGKTTLAKAIVNS 181 (558)
Q Consensus 160 ~~LL~GppGtGKTtLa~~la~~ 181 (558)
.+++.|++|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 498
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.38 E-value=0.15 Score=53.42 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCCeEEEEcCCCchHHHHHHHHHHHhCCCceEEEEe
Q 008664 147 SLLRSAVCSNRLPSIIFWGPPGTGKTTLAKAIVNSVAVSYKFVCLS 192 (558)
Q Consensus 147 ~~l~~~i~~~~~~~~LL~GppGtGKTtLa~~la~~l~~~~~~i~l~ 192 (558)
..+...+.-.+...+.|.||+|+|||||++.|++....+.-.+.+.
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~ 191 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLI 191 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEe
Confidence 3444443333446789999999999999999999987444344443
No 499
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=91.34 E-value=0.15 Score=58.08 Aligned_cols=39 Identities=38% Similarity=0.612 Sum_probs=35.4
Q ss_pred hhHHHHhcCCCHHHHHHHHHHhCCccHHHHHHHHHhhcCC
Q 008664 2 EMEQLLSMGFPDELAAEALAATGGKSTLKATEWILSHKSS 41 (558)
Q Consensus 2 ~~~~~~~~g~~~~~~~~al~~~g~~~~~~~~~w~~~~~~~ 41 (558)
.+++|.+|||+...+++||..+++ .++++++|+|+|...
T Consensus 723 ~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 723 CVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCccc
Confidence 367999999999999999999988 889999999998653
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.30 E-value=0.087 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHHHhC
Q 008664 159 PSIIFWGPPGTGKTTLAKAIVNSVA 183 (558)
Q Consensus 159 ~~~LL~GppGtGKTtLa~~la~~l~ 183 (558)
..+.|.||+|+|||||.++|+....
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4589999999999999999997543
Done!