BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008665
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/124 (82%), Positives = 111/124 (89%)
Query: 315 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGR 374
VRRVPLF NMDERLLDAICERLKP L TE + +VREGDPV EML IIRG LESVTTDGGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 375 TGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVAS 434
+GFYNR +LKEGDFCG+ELLTWALDPKS +NLP STRTV+AL EVEAF+L A+ELKFVAS
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 435 QFRR 438
QFRR
Sbjct: 128 QFRR 131
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+++ Y ++ + + DE+ ++ L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKG- 133
Query: 374 RTGFYNRGM-LKEGDFCGE 391
N+ M L +G + GE
Sbjct: 134 -----NKEMKLSDGSYFGE 147
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+++ Y ++ + + DE+ ++ L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKG- 130
Query: 374 RTGFYNRGM-LKEGDFCGE 391
N+ M L +G + GE
Sbjct: 131 -----NKEMKLSDGSYFGE 144
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+++ Y ++ + + DE+ ++ L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKG- 130
Query: 374 RTGFYNRGM-LKEGDFCGE 391
N+ M L +G + GE
Sbjct: 131 -----NKEMKLSDGSYFGE 144
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+++ Y ++ + + DE+ ++ L LR +I C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKG- 128
Query: 374 RTGFYNRGM-LKEGDFCGE 391
N+ M L +G + GE
Sbjct: 129 -----NKEMKLSDGSYFGE 142
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+R+ Y ++ + + DEE ++ L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRK 69
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + ++ +L+ + G ++REG +M I G + SV T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKGN 128
Query: 374 RTGFYNRGMLKEGDFCGE 391
+ L +G + GE
Sbjct: 129 K-----ETKLADGSYFGE 141
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+++ Y ++ + + DE+ ++ L LR I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKG- 130
Query: 374 RTGFYNRGM-LKEGDFCGE 391
N+ M L +G + GE
Sbjct: 131 -----NKEMKLSDGSYFGE 144
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+R+ Y ++ + + DEE ++ L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRK 69
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + ++ +L+ + G ++REG +M I G + SV T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKGN 128
Query: 374 RTGFYNRGMLKEGDFCGE 391
+ L +G + GE
Sbjct: 129 K-----ETKLADGSYFGE 141
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D+R+++ Y ++ + + DEE+++ L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRY-QGKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRG--------SL 365
LV +PLFAN D + A+ +L+ + G ++REG +M I G S
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSK 135
Query: 366 ESVTTDGGRTG 376
E TDG G
Sbjct: 136 EMKLTDGSYFG 146
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
+ +D + ++ LP+ L +R+ W G+D L+++ P +LR DI HL
Sbjct: 17 RTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKE 76
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
L+ ++PLF + L ++ +K S C G ++R+GD + + + GS+E V D
Sbjct: 77 LL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSME-VLKDNT 134
Query: 374 RTGFYNRGMLKEGD-FCGEELLTWALDPKSVTNLPLSTRTVRALDEV 419
+G L D E+++ + K++T L +++ L EV
Sbjct: 135 VLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREV 181
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+++ Y ++ + + DE+ ++ L LR +I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKG- 132
Query: 374 RTGFYNRGM-LKEGDFCGE-ELLTWALDPKSV 403
N+ M L +G + GE LLT SV
Sbjct: 133 -----NKEMKLSDGSYFGEISLLTRGRRTASV 159
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 250 EMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRH 309
+ R K + E++M +R LP LR ++ Y +++ + DE H+ + + + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRY-RGKMFDERHIFREVSESIRQDVANY 67
Query: 310 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVT 369
C +LV VP F D + + L+ + V++EG M I +G ++ +
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 370 TDG 372
+DG
Sbjct: 128 SDG 130
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+M LP D R+R+ Y ++ + + DEE ++ L + LR +I
Sbjct: 17 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNXRK 75
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV +PLFAN D + ++ +L+ + G ++REG +M I G + SV T G
Sbjct: 76 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVLTKGN 134
Query: 374 RTGFYNRGMLKEGDFCGE 391
+ L +G + GE
Sbjct: 135 K-----ETKLADGSYFGE 147
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLN 313
K + EQ+ LP D R+++ Y ++ + + DE+ ++ L LR +I C
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRY-QGKXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV PLFAN D + A +LK + G ++REG + + I+ + SV T G
Sbjct: 73 LVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREG-TIGKKXYFIQHGVVSVLTKGN 131
Query: 374 RTGFYNRGMLKEGDFCGE 391
+ L +G + GE
Sbjct: 132 K-----EXKLSDGSYFGE 144
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 292 EHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREG 351
E ++Q PKD+R DI HL + + P F + L A+ + C G + G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 352 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNL 406
+ V + ++ GSLE + D +L +GD G+ A +S N+
Sbjct: 66 ESVDSLCFVVSGSLEVIQDDE------VVAILGKGDVFGDVFWKEATLAQSCANV 114
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 313 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG 372
LV VPLF + +L I L+ G + R G+P M ++ GS+ T
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 68
Query: 373 GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFV 432
N L G F GE L +P+S TV A V SL + + + +
Sbjct: 69 ------NPVELGPGAFFGEMALISG-EPRSA--------TVSAATTVSLLSLHSADFQML 113
Query: 433 ASQFRRLHSRQVQHTFRFYSHQWRTWAA 460
S S ++ FR + + R AA
Sbjct: 114 CSS-----SPEIAEIFRKTALERRGAAA 136
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 24/158 (15%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
R D R+ LV VPLF + +L I L+ G + R G+P M ++
Sbjct: 220 RGDFVRNW--QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 277
Query: 363 GSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAF 422
GS+ T N L G F GE L + +P+S TV A V
Sbjct: 278 GSVSVATP--------NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLL 320
Query: 423 SLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAA 460
SL + + + + S S ++ FR + + R AA
Sbjct: 321 SLHSADFQMLCS-----SSPEIAEIFRKTALERRGAAA 353
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 313 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG 372
LV VPLF + +L I L+ G + R G+P M ++ GS+ T
Sbjct: 15 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 72
Query: 373 GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFV 432
N L G F GE L +P+S TV A V SL + + + +
Sbjct: 73 ------NPVELGPGAFFGEMALISG-EPRSA--------TVSAATTVSLLSLHSADFQML 117
Query: 433 ASQFRRLHSRQVQHTFRFYSHQWRTWAA 460
S S ++ FR + + R AA
Sbjct: 118 CS-----SSPEIAEIFRKTALERRGAAA 140
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 313 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG 372
LV VPLF + +L I L+ G + R G+P M ++ GS+ T
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 70
Query: 373 GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFV 432
N L G F GE L +P+S TV A V SL + + + +
Sbjct: 71 ------NPVELGPGAFFGEMALISG-EPRSA--------TVSAATTVSLLSLHSADFQML 115
Query: 433 ASQFRRLHSRQVQHTFRFYSHQWRTWAA 460
S S ++ FR + + R AA
Sbjct: 116 CS-----SSPEIAEIFRKTALERRGAAA 138
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 313 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG 372
LV VPLF + +L I L+ G + R G+P M ++ GS+ T
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 70
Query: 373 GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFV 432
N L G F GE L +P+S TV A V SL + + + +
Sbjct: 71 ------NPVELGPGAFFGEMALISG-EPESA--------TVSAATTVSLLSLHSADFQML 115
Query: 433 ASQFRRLHSRQVQHTFRFYSHQWRTWAA 460
S S ++ FR + + R AA
Sbjct: 116 CS-----SSPEIAEIFRKTALERRGAAA 138
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 24/158 (15%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
R D R+ LV VPLF + +L I L+ G + R G+P M ++
Sbjct: 5 RGDFVRNW--QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 62
Query: 363 GSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAF 422
GS+ T N L G F GE L ++ P S TV A V
Sbjct: 63 GSVSVATP--------NPVELGPGAFFGEMAL--------ISGEPWSA-TVSAATTVSLL 105
Query: 423 SLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAA 460
SL + + + + S S ++ FR + + R AA
Sbjct: 106 SLHSADFQMLCS-----SSPEIAEIFRKTALERRGAAA 138
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 22/147 (14%)
Query: 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGG 373
LV VPLF + +L I L+ G + R G+P M ++ GS+ T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 374 RTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVA 433
N L G F GE L + +P+S TV A V SL + + + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 114
Query: 434 SQFRRLHSRQVQHTFRFYSHQWRTWAA 460
S S ++ FR + + R AA
Sbjct: 115 SS-----SPEIAEIFRKTALEARGAAA 136
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 256 RDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLV 315
+D + +M +R + QD+R+ V W+ +G +E V+NL K + +D K L L+ +
Sbjct: 205 KDGDLFMSYRSMFQDVRDAV------DWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRM 258
Query: 316 R---RVPLFANMDERLLDAICERL 336
+ +V L N D + D I L
Sbjct: 259 KEVGKVFLATNSDYKYTDKIMTYL 282
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 256 RDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLV 315
+D + +M +R + QD+R+ V W+ +G +E V+NL K + +D K L L+ +
Sbjct: 204 KDGDLFMSYRSMFQDVRDAV------DWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRM 257
Query: 316 R---RVPLFANMDERLLDAICERL 336
+ +V L N D + D I L
Sbjct: 258 KEVGKVFLATNSDYKYTDKIMTYL 281
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 256 RDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLV 315
+D + +M +R + QD+R+ V W+ +G +E V+NL K + +D K L L+ +
Sbjct: 205 KDGDLFMSYRSMFQDVRDAV------DWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRM 258
Query: 316 R---RVPLFANMDERLLDAICERL 336
+ +V L N D + D I L
Sbjct: 259 KEVGKVFLATNSDYKYTDKIMTYL 282
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 256 RDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLV 315
+D + +M +R + QD+R+ V W+ +G +E V+NL K + +D K L L+ +
Sbjct: 205 KDGDLFMSYRSMFQDVRDAV------DWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRM 258
Query: 316 R---RVPLFANMDERLLDAICERL 336
+ +V L N D + D I L
Sbjct: 259 KEVGKVFLATNSDYKYTDKIMTYL 282
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 307 KRHLCLNLVRRVPLFANMD--ERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGS 364
KR + + +V + ++D ERL + + L+P +G +V +G+P E +I+ GS
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERL--TVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 206
Query: 365 LESVTTDGGRTGFYNRGMLKEGDFCGE 391
+ F G L D+ GE
Sbjct: 207 AAVLQRRSENEEFVEVGRLGPSDYFGE 233
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 307 KRHLCLNLVRRVPLFANMD--ERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGS 364
KR + + +V + ++D ERL + + L+P +G +V +G+P E +I+ GS
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERL--TVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 204
Query: 365 LESVTTDGGRTGFYNRGMLKEGDFCGE 391
+ F G L D+ GE
Sbjct: 205 AAVLQRRSENEEFVEVGRLGPSDYFGE 231
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 307 KRHLCLNLVRRVPLFANMD--ERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGS 364
KR + + +V + ++D ERL + + L+P +G +V +G+P E +I+ GS
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERL--TVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 208
Query: 365 LESVTTDGGRTGFYNRGMLKEGDFCGE 391
+ F G L D+ GE
Sbjct: 209 AAVLQRRSENEEFVEVGRLGPSDYFGE 235
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
+ D +R+ + + LF N+D + + + + L EG V+ +GD +I R
Sbjct: 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 194
Query: 363 GSLE-SVTTDG-GR-TGFY-NRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDE 418
G+ + V DG GR G Y NRG GE L + PK+ T S + LD
Sbjct: 195 GTFDIYVKCDGVGRCVGNYDNRGSF------GELALMYNT-PKAATITATSPGALWGLDR 247
Query: 419 V 419
V
Sbjct: 248 V 248
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
+ D +R+ + + LF N+D + + + + L EG V+ +GD +I R
Sbjct: 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 194
Query: 363 GSLE-SVTTDG-GR-TGFY-NRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDE 418
G+ + V DG GR G Y NRG GE L + PK+ T S + LD
Sbjct: 195 GTFDIYVKCDGVGRCVGNYDNRGSF------GELALMYNT-PKAATITATSPGALWGLDR 247
Query: 419 V 419
V
Sbjct: 248 V 248
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
+ D +R+ + + LF N+D + + + + L EG V+ +GD +I R
Sbjct: 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 87
Query: 363 GSLE-SVTTDG-GR-TGFY-NRGMLKE 385
G+ + V DG GR G Y NRG E
Sbjct: 88 GTFDIYVKCDGVGRCVGNYDNRGSFGE 114
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
+ D +R+ + + LF N+D + + + + L EG V+ +GD +I R
Sbjct: 24 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 83
Query: 363 GSLE-SVTTDG-GR-TGFY-NRGMLKE 385
G+ + V DG GR G Y NRG E
Sbjct: 84 GTFDIYVKCDGVGRCVGNYDNRGSFGE 110
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 291 EEHLVQNLPKDLRR-----DIKRHLCLNLVRRV---------PLFANMDERLLDAICERL 336
+E L++ L +D++R D+ L L L R + P + E ++ + E L
Sbjct: 24 DEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEEL 83
Query: 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTW 396
L TE + + P + +++ I+GS ++ T F RG K G C + TW
Sbjct: 84 TKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRG-YKVGVVCSD---TW 139
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIR 362
+ D +R+ + + LF N+D + + + + L EG V+ +GD +I R
Sbjct: 34 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 93
Query: 363 GSLE-SVTTDG-GR-TGFY-NRGMLKE 385
G+ + V DG GR G Y NRG E
Sbjct: 94 GTFDIYVKCDGVGRCVGNYDNRGSFGE 120
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 316 RRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRT 375
+ + LF N+D+ L + + + + V+ +GD +I RG+ + + T +T
Sbjct: 41 KDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQT 100
Query: 376 ---GFY-NRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEV 419
G Y NRG GE L + P++ T + S ++ LD V
Sbjct: 101 RSVGQYDNRGSF------GELALMYNT-PRAATIIATSEGSLWGLDRV 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,554,849
Number of Sequences: 62578
Number of extensions: 616968
Number of successful extensions: 1676
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 49
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)