Query 008665
Match_columns 558
No_of_seqs 430 out of 2945
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 5E-106 1E-110 873.2 44.0 523 1-557 111-639 (727)
2 PLN03192 Voltage-dependent pot 100.0 3.6E-63 7.7E-68 568.8 47.3 409 8-451 93-501 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.4E-63 5.3E-68 502.4 35.2 402 6-444 28-431 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.2E-58 4.9E-63 470.1 25.9 404 6-442 248-664 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.1E-52 2.5E-57 429.9 28.2 380 7-438 261-643 (815)
6 PRK09392 ftrB transcriptional 99.7 3.2E-15 6.8E-20 147.4 17.6 127 312-449 6-132 (236)
7 KOG3713 Voltage-gated K+ chann 99.6 7.3E-15 1.6E-19 151.8 13.9 190 8-248 241-437 (477)
8 PRK11753 DNA-binding transcrip 99.5 3.2E-13 7E-18 130.6 19.0 115 322-446 6-121 (211)
9 cd00038 CAP_ED effector domain 99.5 4.5E-13 9.8E-18 114.9 13.0 111 320-441 1-112 (115)
10 PRK11161 fumarate/nitrate redu 99.5 9.3E-13 2E-17 129.7 15.8 122 315-448 15-138 (235)
11 PRK10402 DNA-binding transcrip 99.5 5E-13 1.1E-17 130.9 13.1 108 329-447 24-132 (226)
12 smart00100 cNMP Cyclic nucleot 99.4 3.3E-12 7.2E-17 110.1 14.7 112 320-442 1-115 (120)
13 PF00520 Ion_trans: Ion transp 99.4 5.1E-13 1.1E-17 126.8 9.8 193 11-237 1-200 (200)
14 PF00027 cNMP_binding: Cyclic 99.4 1.2E-12 2.5E-17 108.2 10.7 89 339-438 2-91 (91)
15 COG0664 Crp cAMP-binding prote 99.4 2.2E-11 4.7E-16 117.1 18.0 123 316-449 3-126 (214)
16 KOG1545 Voltage-gated shaker-l 99.4 8.5E-14 1.8E-18 137.2 0.9 195 2-245 248-450 (507)
17 TIGR03697 NtcA_cyano global ni 99.3 4.3E-11 9.4E-16 113.9 14.6 125 344-482 1-126 (193)
18 PRK09391 fixK transcriptional 99.3 7.3E-11 1.6E-15 115.9 15.6 106 330-449 32-138 (230)
19 KOG0614 cGMP-dependent protein 99.3 1.3E-11 2.8E-16 127.5 9.0 128 310-446 269-397 (732)
20 PRK13918 CRP/FNR family transc 99.2 2.2E-10 4.8E-15 109.9 15.8 125 335-482 5-132 (202)
21 PLN02868 acyl-CoA thioesterase 99.2 1.2E-10 2.7E-15 124.2 12.9 113 312-437 7-119 (413)
22 KOG1419 Voltage-gated K+ chann 99.2 7E-11 1.5E-15 122.8 9.4 93 182-281 263-355 (654)
23 COG2905 Predicted signal-trans 99.2 5.1E-10 1.1E-14 117.6 15.0 116 312-441 6-121 (610)
24 KOG1113 cAMP-dependent protein 99.1 2.7E-10 5.8E-15 113.3 9.3 115 312-441 121-235 (368)
25 KOG0614 cGMP-dependent protein 99.1 1.7E-10 3.6E-15 119.5 7.6 128 307-449 148-275 (732)
26 PF07885 Ion_trans_2: Ion chan 98.9 2.9E-09 6.3E-14 86.2 7.7 57 186-242 22-78 (79)
27 KOG4390 Voltage-gated A-type K 98.9 3.3E-11 7.2E-16 120.0 -6.3 178 5-237 225-405 (632)
28 KOG1113 cAMP-dependent protein 98.8 1.6E-08 3.5E-13 100.8 8.7 119 306-438 233-351 (368)
29 KOG1420 Ca2+-activated K+ chan 98.8 6.3E-09 1.4E-13 108.3 5.3 138 184-329 284-426 (1103)
30 KOG3684 Ca2+-activated K+ chan 98.4 6.8E-06 1.5E-10 84.8 14.7 117 138-284 259-375 (489)
31 PRK10537 voltage-gated potassi 98.3 7.1E-06 1.5E-10 86.5 14.0 55 187-241 167-221 (393)
32 KOG2968 Predicted esterase of 98.2 2.4E-06 5.1E-11 94.0 6.5 114 327-451 499-613 (1158)
33 KOG2968 Predicted esterase of 97.6 0.00049 1.1E-08 76.4 11.5 110 332-446 111-222 (1158)
34 KOG1418 Tandem pore domain K+ 97.6 0.00016 3.4E-09 77.2 7.4 60 188-247 115-174 (433)
35 PF01007 IRK: Inward rectifier 97.3 0.00083 1.8E-08 69.3 8.6 58 186-243 82-141 (336)
36 PRK11832 putative DNA-binding 97.3 0.0052 1.1E-07 58.5 12.9 108 327-464 13-121 (207)
37 PF04831 Popeye: Popeye protei 96.7 0.016 3.4E-07 52.0 10.3 108 324-441 15-124 (153)
38 KOG3193 K+ channel subunit [In 96.2 0.01 2.2E-07 62.7 6.6 33 189-221 218-250 (1087)
39 PLN03223 Polycystin cation cha 95.5 1.2 2.7E-05 52.8 19.9 31 214-244 1395-1425(1634)
40 KOG4404 Tandem pore domain K+ 95.4 0.055 1.2E-06 54.2 7.9 55 188-242 186-248 (350)
41 KOG3542 cAMP-regulated guanine 95.4 0.034 7.4E-07 60.3 6.6 113 310-437 278-392 (1283)
42 KOG4404 Tandem pore domain K+ 95.3 0.0045 9.8E-08 61.7 -0.2 52 187-238 79-130 (350)
43 KOG3827 Inward rectifier K+ ch 94.0 0.23 5E-06 51.1 8.3 63 185-247 109-173 (400)
44 KOG2302 T-type voltage-gated C 93.7 3.5 7.5E-05 47.4 17.3 41 9-66 1158-1200(1956)
45 KOG1418 Tandem pore domain K+ 93.4 0.02 4.3E-07 61.0 -0.4 49 187-235 241-297 (433)
46 KOG0498 K+-channel ERG and rel 92.9 3 6.5E-05 47.4 15.7 205 89-309 202-441 (727)
47 KOG3542 cAMP-regulated guanine 90.6 0.33 7.2E-06 53.0 4.7 105 299-426 23-127 (1283)
48 PLN03192 Voltage-dependent pot 85.2 85 0.0018 36.9 21.5 43 265-312 357-399 (823)
49 COG4709 Predicted membrane pro 84.1 5.8 0.00013 37.0 8.1 72 254-327 6-81 (195)
50 KOG3676 Ca2+-permeable cation 78.8 40 0.00086 38.5 13.7 73 201-274 601-680 (782)
51 TIGR00870 trp transient-recept 78.4 1.2E+02 0.0026 35.0 18.6 42 213-254 587-629 (743)
52 PF08006 DUF1700: Protein of u 76.6 14 0.00031 34.5 8.5 55 254-310 6-64 (181)
53 KOG2301 Voltage-gated Ca2+ cha 75.6 74 0.0016 39.9 15.9 49 5-74 471-520 (1592)
54 KOG2301 Voltage-gated Ca2+ cha 74.0 23 0.00051 44.0 11.3 46 6-71 871-917 (1592)
55 PF07883 Cupin_2: Cupin domain 73.8 5.5 0.00012 30.4 4.2 44 339-389 3-47 (71)
56 PRK13290 ectC L-ectoine syntha 72.4 23 0.0005 31.1 8.1 69 337-424 38-106 (125)
57 PF14377 DUF4414: Domain of un 72.1 6.4 0.00014 33.6 4.5 44 266-309 52-105 (108)
58 KOG2302 T-type voltage-gated C 70.9 2.1E+02 0.0046 33.9 16.7 26 8-33 114-140 (1956)
59 PF00060 Lig_chan: Ligand-gate 70.6 5.4 0.00012 35.5 3.9 76 184-265 40-115 (148)
60 TIGR03037 anthran_nbaC 3-hydro 68.6 13 0.00028 34.1 5.8 59 353-428 47-105 (159)
61 PRK13264 3-hydroxyanthranilate 63.1 17 0.00038 33.8 5.6 62 352-430 52-113 (177)
62 PF10011 DUF2254: Predicted me 58.8 59 0.0013 34.3 9.5 65 183-247 95-159 (371)
63 PF13314 DUF4083: Domain of un 55.7 55 0.0012 24.4 5.9 50 214-263 4-56 (58)
64 PF07697 7TMR-HDED: 7TM-HD ext 53.6 60 0.0013 30.9 8.1 59 297-356 147-208 (222)
65 PF05899 Cupin_3: Protein of u 50.7 27 0.00059 27.4 4.2 42 341-390 14-55 (74)
66 PRK09108 type III secretion sy 48.0 66 0.0014 33.7 7.6 68 210-277 174-241 (353)
67 KOG1054 Glutamate-gated AMPA-t 46.1 27 0.00059 38.3 4.5 73 189-267 596-668 (897)
68 smart00835 Cupin_1 Cupin. This 44.2 58 0.0013 29.1 5.8 53 336-390 32-86 (146)
69 PRK08156 type III secretion sy 43.8 86 0.0019 32.9 7.7 66 212-277 169-234 (361)
70 PRK05702 flhB flagellar biosyn 41.4 1E+02 0.0022 32.3 7.9 68 210-277 179-246 (359)
71 KOG3599 Ca2+-modulated nonsele 40.8 6.6E+02 0.014 29.5 18.0 15 54-68 493-508 (798)
72 PRK12721 secretion system appa 40.8 99 0.0021 32.3 7.6 68 211-278 173-240 (349)
73 COG1917 Uncharacterized conser 40.5 60 0.0013 28.3 5.3 49 336-391 45-94 (131)
74 PF14377 DUF4414: Domain of un 39.3 57 0.0012 27.8 4.7 49 266-314 8-69 (108)
75 TIGR01404 FlhB_rel_III type II 39.2 1.2E+02 0.0025 31.7 7.8 67 212-278 173-239 (342)
76 TIGR00328 flhB flagellar biosy 39.1 1.2E+02 0.0025 31.7 7.8 66 212-277 174-239 (347)
77 COG5559 Uncharacterized conser 39.1 29 0.00062 25.9 2.3 19 292-310 5-23 (65)
78 PF12973 Cupin_7: ChrR Cupin-l 38.7 88 0.0019 25.4 5.6 64 335-423 25-88 (91)
79 COG1377 FlhB Flagellar biosynt 38.2 5E+02 0.011 27.3 14.8 30 249-278 218-247 (363)
80 PRK12468 flhB flagellar biosyn 38.1 1.2E+02 0.0026 32.2 7.8 67 211-277 180-246 (386)
81 COG4792 EscU Type III secretor 37.9 2E+02 0.0044 29.2 8.7 76 196-277 164-240 (349)
82 COG0662 {ManC} Mannose-6-phosp 37.6 77 0.0017 27.7 5.4 48 335-389 37-85 (127)
83 PRK13109 flhB flagellar biosyn 36.9 1.3E+02 0.0028 31.5 7.8 66 212-277 183-248 (358)
84 PRK04190 glucose-6-phosphate i 32.5 1.7E+02 0.0038 27.7 7.2 53 336-390 70-131 (191)
85 COG1422 Predicted membrane pro 31.9 1.8E+02 0.0038 27.8 6.9 40 225-264 48-90 (201)
86 PRK06298 type III secretion sy 31.3 1.9E+02 0.004 30.4 7.8 54 225-278 188-241 (356)
87 PF02037 SAP: SAP domain; Int 31.2 81 0.0018 20.8 3.4 26 254-279 5-35 (35)
88 PF01484 Col_cuticle_N: Nemato 30.7 2E+02 0.0043 20.5 6.8 41 218-258 9-49 (53)
89 PF14841 FliG_M: FliG middle d 30.6 77 0.0017 25.2 3.9 40 292-339 30-69 (79)
90 PF08016 PKD_channel: Polycyst 29.4 7.2E+02 0.016 26.5 15.1 20 50-69 233-253 (425)
91 KOG4440 NMDA selective glutama 29.2 1.1E+02 0.0024 34.1 5.7 60 183-242 608-667 (993)
92 PHA02909 hypothetical protein; 27.5 77 0.0017 23.4 2.9 42 200-244 14-55 (72)
93 PF06249 EutQ: Ethanolamine ut 27.4 1.9E+02 0.0042 26.3 6.2 52 353-425 94-145 (152)
94 COG3450 Predicted enzyme of th 26.8 1.9E+02 0.0041 25.1 5.8 42 341-390 52-93 (116)
95 TIGR03404 bicupin_oxalic bicup 26.6 1.5E+02 0.0033 31.2 6.3 51 337-390 70-121 (367)
96 TIGR03404 bicupin_oxalic bicup 25.5 1.6E+02 0.0035 31.0 6.2 51 336-389 247-299 (367)
97 COG4016 Uncharacterized protei 25.3 34 0.00073 30.2 0.9 12 545-556 60-71 (165)
98 PRK12772 bifunctional flagella 25.1 2.2E+02 0.0049 32.1 7.7 66 212-277 437-502 (609)
99 PRK11171 hypothetical protein; 23.1 1.8E+02 0.0038 29.1 5.8 49 335-390 185-234 (266)
100 PRK06771 hypothetical protein; 22.3 4.6E+02 0.0099 21.8 6.8 47 215-264 2-48 (93)
101 KOG3300 NADH:ubiquinone oxidor 21.8 3.6E+02 0.0077 23.8 6.4 45 255-300 62-106 (146)
102 PF08763 Ca_chan_IQ: Voltage g 21.6 1.1E+02 0.0024 20.5 2.6 20 457-476 9-28 (35)
103 COG3837 Uncharacterized conser 21.2 1.3E+02 0.0027 27.6 3.7 34 351-391 61-94 (161)
104 KOG3609 Receptor-activated Ca2 20.6 6.4E+02 0.014 29.4 9.9 55 188-242 553-612 (822)
105 PF13623 SurA_N_2: SurA N-term 20.3 2.6E+02 0.0057 25.2 5.7 44 220-263 10-66 (145)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-106 Score=873.19 Aligned_cols=523 Identities=50% Similarity=0.786 Sum_probs=452.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhhhhHHHHHhhcCHHHHHHHHhc
Q 008665 1 MDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYL 80 (558)
Q Consensus 1 ~~~~~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~F~iDlls~lPl~~i~~~~~~ 80 (558)
+|+.+...++++|+++|+||++||+++|+|+|++++|+ ++|.||++||+||+++||++|++|++|+|++++|.++
T Consensus 111 ~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~ 185 (727)
T KOG0498|consen 111 IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI 185 (727)
T ss_pred ccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee
Confidence 57889999999999999999999999999999999863 8999999999999999999999999999999998776
Q ss_pred cCCcchhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhccCcccCC
Q 008665 81 SDTRAKVFS-TKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHQTREHIIDHKCHAMEG 159 (558)
Q Consensus 81 ~~~~~~~~~-~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~~~~ 159 (558)
. +.... ....+..+.++||+||++|++++++++.+..+++.+++|+++++++++|||++||.||+||.++....+.
T Consensus 186 ~---~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~ 262 (727)
T KOG0498|consen 186 G---STSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPAS 262 (727)
T ss_pred c---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 22222 2236777788899999999999999999999999999999999999999999999999999876433111
Q ss_pred CC---CCcc--hhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHH
Q 008665 160 NP---EFNF--GIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLI 234 (558)
Q Consensus 160 ~~---~~~~--g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~li 234 (558)
.. .|.- +.+.. ..+.. ..-...+...+|++|+||+++||||+|||+.+|+|..|++|+|++|++|+++||++|
T Consensus 263 ~~~~~tw~~~l~~~~~-~~~~~-~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lI 340 (727)
T KOG0498|consen 263 CPRKATWLGSLGRLLS-CYNLS-FTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLI 340 (727)
T ss_pred Cccccccccccccccc-cCccc-ccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHH
Confidence 00 1100 00000 00000 000134566799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhh
Q 008665 235 GNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNL 314 (558)
Q Consensus 235 g~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~l 314 (558)
|||++++|+.+++.++||.|++++++||++|+||++||+||++|+||+|..++|+||+++|++||++||+||++|+|.++
T Consensus 341 GNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~l 420 (727)
T KOG0498|consen 341 GNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDL 420 (727)
T ss_pred hhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhh
Q 008665 315 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELL 394 (558)
Q Consensus 315 l~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl 394 (558)
++++|+|+++|++++++||.++++..|+|||+|++|||++++||||++|.+++.++++| ++++...+++||+|||+.+
T Consensus 421 v~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~ 498 (727)
T KOG0498|consen 421 VRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELL 498 (727)
T ss_pred HhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999998887 4456999999999998877
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 008665 395 TWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRK 474 (558)
Q Consensus 395 ~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~ 474 (558)
+|+++ -| +++||+|+|+|+++.|+++||++++++||++++++++|++++|+++||+|++|++|.+|+++++|+
T Consensus 499 ~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~ 571 (727)
T KOG0498|consen 499 TWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRK 571 (727)
T ss_pred HHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhh
Confidence 78764 22 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhcccccccccccccccCCCCCCCCCCCcchhhHHHHHHHHHHHhhhhhhccCCCCCCCcccCCCCCCCCCC
Q 008665 475 KATEQRLKEEGERIDYGEVSHGALADQPSADSGDAPSRLRATVLASRFAANALRGHRHRASVATSPPRRLINLQKPSEPD 554 (558)
Q Consensus 475 ~~~~~~~~~~ery~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (558)
.. ...... +.... .. ..+.+...+++++.+|++||+|++++++.+..+ .+....++.++||.|||
T Consensus 572 ~~-~~l~~~-~~~~~------~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 636 (727)
T KOG0498|consen 572 GE-EELALE-EEESA------IR------GDDRGSKSLLRAGILASRFAANGRPPLHTAASR-GSSDCALLLLQKPADPD 636 (727)
T ss_pred cc-chhhhh-cchhh------hc------cccccchhhhhcccccccccccCCCcccccccc-CccccccccCCCCCCCC
Confidence 87 322222 11110 00 124455688999999999999999998665321 25566788999999999
Q ss_pred CCC
Q 008665 555 FNA 557 (558)
Q Consensus 555 ~~~ 557 (558)
|+.
T Consensus 637 f~~ 639 (727)
T KOG0498|consen 637 FSD 639 (727)
T ss_pred ccc
Confidence 984
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3.6e-63 Score=568.83 Aligned_cols=409 Identities=21% Similarity=0.302 Sum_probs=343.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhhhhHHHHHhhcCHHHHHHHHhccCCcchh
Q 008665 8 AITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRAKV 87 (558)
Q Consensus 8 ~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~F~iDlls~lPl~~i~~~~~~~~~~~~~ 87 (558)
.+.+++.++|++|++||+++|+|+|+++. .|.+|.||++|++||+|+||++|++|++|++++..... .. ...
T Consensus 93 ~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~--~~~ 164 (823)
T PLN03192 93 GLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GT--VKL 164 (823)
T ss_pred CeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CC--ccc
Confidence 46789999999999999999999999976 58999999999999999999999999999987754221 11 111
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCCcchh
Q 008665 88 FSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHQTREHIIDHKCHAMEGNPEFNFGI 167 (558)
Q Consensus 88 ~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~~~~~~~~~~g~ 167 (558)
....++|+++| +.|+.|+.+++..+.+.... ...|..++..++..++++||+||.|+..+......+..|
T Consensus 165 ~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~W---- 234 (823)
T PLN03192 165 NLSYSLLGLLR----FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTW---- 234 (823)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch----
Confidence 11223444433 33555555555555543322 123444444455556789999999998765332222222
Q ss_pred hHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008665 168 YLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 247 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 247 (558)
......+.. +.+++.+|++|+||+++|||||||||++|.|..|++|++++|++|+++|||+||+|++++.+.+.+
T Consensus 235 -i~~~~~~~~----~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~ 309 (823)
T PLN03192 235 -IGAVIPNFR----ETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 309 (823)
T ss_pred -HHHhhhccc----cCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112232 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhccCcccccccHH
Q 008665 248 LEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDER 327 (558)
Q Consensus 248 ~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~ 327 (558)
.++|+++++.+++||+++++|+.||+||++|++|+|+. ++.+++++++.||++||.+|..+++.+.++++|+|++++++
T Consensus 310 ~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~ 388 (823)
T PLN03192 310 TMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSRE 388 (823)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHH
Confidence 99999999999999999999999999999999999984 46889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCC
Q 008665 328 LLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLP 407 (558)
Q Consensus 328 ~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~ 407 (558)
++.+++..++++.|.|||.|+.+||+++++|||.+|.|+++..++|++.+ +..+++|++|||.++ +.+.|
T Consensus 389 ~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~---l~~~p----- 458 (823)
T PLN03192 389 ILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGA---LCCRP----- 458 (823)
T ss_pred HHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee--eEEccCCCEecchHH---hcCCC-----
Confidence 99999999999999999999999999999999999999998877777776 889999999999988 56666
Q ss_pred CcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008665 408 LSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 451 (558)
Q Consensus 408 ~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~ 451 (558)
++.+++|.++|+++.|++++|.++++++|+....++++..+..
T Consensus 459 -~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~ 501 (823)
T PLN03192 459 -QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHH 501 (823)
T ss_pred -CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998888887777643
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-63 Score=502.43 Aligned_cols=402 Identities=23% Similarity=0.346 Sum_probs=339.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhccCCc
Q 008665 6 AAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTR 84 (558)
Q Consensus 6 ~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~~~~~ 84 (558)
-..|.++|++.|++|++||+++++|+|++ +|.+|.|-.+..+||.++ .|.+|++|.+|++++.++..
T Consensus 28 ~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~----- 95 (536)
T KOG0500|consen 28 LENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG----- 95 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC-----
Confidence 45688999999999999999999999998 699999999999999998 89999999999999876421
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHH-HHhhhhhhhhhhccCcccCCCCCC
Q 008665 85 AKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYI-VCSHQTREHIIDHKCHAMEGNPEF 163 (558)
Q Consensus 85 ~~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~w~~~~c~~~~~~~~~ 163 (558)
+. -..| ++|++|++|++.-+.++..-..-.+ +..+.+++.++ ++.||.||.++.++-...-+.++|
T Consensus 96 ~~-----~~~r-------~nRllk~yRl~~F~~rTetrT~~Pn-~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~w 162 (536)
T KOG0500|consen 96 SA-----SLER-------LNRLLKIYRLFEFFDRTETRTTYPN-AFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDW 162 (536)
T ss_pred cc-----hHHH-------HHHHHHHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHHHHHhhHHHHhhhHhcCcccccc
Confidence 11 1223 3456666666655555543322112 22355666554 689999999987765444444557
Q ss_pred cchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 164 NFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
.|+...+..-.+. +..++..+|++|+||+..||||+|. ..+|.+..|.+|.|+-.++|+++||.++|++++++.+
T Consensus 163 vY~~i~d~~~~~c----~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 163 VYPKINDPEFATC----DAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred ccCCccCcccccc----chhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 7764333211111 1456899999999999999999995 4578999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhccCccccc
Q 008665 244 LTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFAN 323 (558)
Q Consensus 244 ~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~ 323 (558)
++....+|+.+|+.+++||+.|++|+.|+.||.+||+|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|+++++|+.
T Consensus 238 mna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ 317 (536)
T KOG0500|consen 238 MNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQD 317 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCC
Q 008665 324 MDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSV 403 (558)
Q Consensus 324 l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~ 403 (558)
+++.++.+++..++++.|.|||+|+++||.+++||+|.+|.+++...+|+.. ...+++|++|||.|+++ +.+ +
T Consensus 318 ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g--~ 390 (536)
T KOG0500|consen 318 CEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKG--N 390 (536)
T ss_pred cchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcC--c
Confidence 9999999999999999999999999999999999999999999988766554 68999999999999844 444 3
Q ss_pred CCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHH
Q 008665 404 TNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQV 444 (558)
Q Consensus 404 ~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l 444 (558)
.+..+++++|+++..+++++|+++|+-+.+++||+-+..++
T Consensus 391 ~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 391 KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 45568999999999999999999999999999998655443
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-58 Score=470.05 Aligned_cols=404 Identities=24% Similarity=0.358 Sum_probs=332.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhhhhHHHHHhhcCHHHHHHHHhccCCcc
Q 008665 6 AAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRA 85 (558)
Q Consensus 6 ~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~F~iDlls~lPl~~i~~~~~~~~~~~ 85 (558)
.+.|.+++.++|++|++||+++|+|.|+.| .||+|.||+.|+.+|+|+||+||++|++|++.+..+--....
T Consensus 248 ~vs~lvvDSiVDVIF~vDIvLNFHTTFVGP------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~deg-- 319 (971)
T KOG0501|consen 248 NVSWLVVDSIVDVIFFVDIVLNFHTTFVGP------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEG-- 319 (971)
T ss_pred ceeEEEecchhhhhhhhhhhhhcceeeecC------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccccc--
Confidence 356788999999999999999999999998 599999999999999999999999999999988664322221
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhccCcc--cCCCCCC
Q 008665 86 KVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHQTREHIIDHKCHA--MEGNPEF 163 (558)
Q Consensus 86 ~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~--~~~~~~~ 163 (558)
.-+.+..|+ +-||+|+.|+.+++.++..+ ..+..+..++.|+|++||+||+||.++-.. +...+..
T Consensus 320 -I~SLFSaLK-------VVRLLRLGRVaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i 387 (971)
T KOG0501|consen 320 -IGSLFSALK-------VVRLLRLGRVARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTI 387 (971)
T ss_pred -HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchheeccccccc
Confidence 112333444 33666666666666655433 223334555678999999999999876422 1111111
Q ss_pred cchhhHHhhhhhh--cc--C----C---CCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHH
Q 008665 164 NFGIYLKAITYEI--HL--S----G---KSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLAL 232 (558)
Q Consensus 164 ~~g~~~~~~~~~~--~~--~----~---~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~ 232 (558)
.+.-|.|.+.+++ .+ + | ...+-...|+.|+||.++.|||||+|.+.|.|..|.+|++++|++|.++||-
T Consensus 388 ~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAt 467 (971)
T KOG0501|consen 388 QPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYAT 467 (971)
T ss_pred ccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 11 0 0 1234456799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhH
Q 008665 233 LIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCL 312 (558)
Q Consensus 233 lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~ 312 (558)
++|++.+++|++++....|++.+..+.+||+-.++|+.|.+||.+|.--.|..++|+|.+++|+..|+++|.||..|+.+
T Consensus 468 IFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNR 547 (971)
T KOG0501|consen 468 IFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNR 547 (971)
T ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechh
Q 008665 313 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEE 392 (558)
Q Consensus 313 ~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~ 392 (558)
..+...|.|.-.++..+++++..++..+..|||.|++.||.++.++||++|.+++...++ .+++++.||.||+.
T Consensus 548 KVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~ 621 (971)
T KOG0501|consen 548 KVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDE 621 (971)
T ss_pred hhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhH
Confidence 999999999999999999999999999999999999999999999999999999886543 27999999999997
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHH
Q 008665 393 LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSR 442 (558)
Q Consensus 393 sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k 442 (558)
-. . .+.+.++-++|+|+|+|.+..|.++.+.+++.-|..+++.
T Consensus 622 FW--K-----~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanS 664 (971)
T KOG0501|consen 622 FW--K-----ENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANS 664 (971)
T ss_pred Hh--h-----hhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 33 1 1223458899999999999999999999999888876653
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-52 Score=429.87 Aligned_cols=380 Identities=22% Similarity=0.339 Sum_probs=319.1
Q ss_pred hHHHHHHHHHHHHHHHHHh-hhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhccCCc
Q 008665 7 AAITTFRSILDCIYSCRIP-FQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTR 84 (558)
Q Consensus 7 ~~~~~~~~i~D~~f~~Di~-l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~~~~~ 84 (558)
-.|.+.++++|++|++||+ ++=|.-|+- .|.+|.|.+...+||+++ .|-+|++|++|+++++..+..
T Consensus 261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~---- 329 (815)
T KOG0499|consen 261 HYWLIADYICDIIYLLDMLFIQPRLQFVR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF---- 329 (815)
T ss_pred hhhhhHHHHhhHHHHHHHhhhhhhheeee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc----
Confidence 4588999999999999996 577778876 699999999999999999 899999999999998764321
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHH-HHhhhhhhhhhhccCcccCCCCCC
Q 008665 85 AKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYI-VCSHQTREHIIDHKCHAMEGNPEF 163 (558)
Q Consensus 85 ~~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~w~~~~c~~~~~~~~~ 163 (558)
+-++| ++|++++..++........++.+ +++-.+..-+.|| .+.|+.+|.+|..+-...-+.+.|
T Consensus 330 ------~p~wR-------~~R~lK~~sF~e~~~~Le~i~s~-~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rW 395 (815)
T KOG0499|consen 330 ------NPMWR-------ANRMLKYTSFFEFNHHLESIMSK-AYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRW 395 (815)
T ss_pred ------chhhh-------hhhHHHHHHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhhhHHHHHHHHhhccccccee
Confidence 12334 34444443333322223333332 2333344444555 478999999886554322222333
Q ss_pred cchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 164 NFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
++ +.-...|++|+||+..|++|+| |...|.|..|++|..+--+.|+++||.+||.|-.++..
T Consensus 396 -------------Vy----dg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 396 -------------VY----DGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred -------------EE----cCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 2334569999999999999999 88899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhccCccccc
Q 008665 244 LTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFAN 323 (558)
Q Consensus 244 ~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~ 323 (558)
.+..+++||..|++.-.||+..+||.+.++||+.+|+|.|+.++..||.+++..||..||.|++...+-..+.++.+|++
T Consensus 458 At~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~ 537 (815)
T KOG0499|consen 458 ATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQG 537 (815)
T ss_pred hhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCC
Q 008665 324 MDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSV 403 (558)
Q Consensus 324 l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~ 403 (558)
++.+.+..++-+++.++|.|||+|+++||++.+||+|..|.|.+....+|... +..+.+|+.|||+|++ |..+.
T Consensus 538 Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V---l~tL~~GsVFGEISLL-aigG~-- 611 (815)
T KOG0499|consen 538 CDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV---LVTLKAGSVFGEISLL-AIGGG-- 611 (815)
T ss_pred hHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---EEEecccceeeeeeee-eecCC--
Confidence 99999999999999999999999999999999999999999999876666544 6999999999999873 23332
Q ss_pred CCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHH
Q 008665 404 TNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRR 438 (558)
Q Consensus 404 ~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~ 438 (558)
| +++++|+|...|.+++|+++|+.+++..||+
T Consensus 612 -n--RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 612 -N--RRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred -C--ccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 2 6999999999999999999999999999994
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.66 E-value=3.2e-15 Score=147.43 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=115.5
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
.+.++.+|+|..++++.++.++...+.+.|++|+.|+++||+++.+|+|.+|.++++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457889999999999999999999999999999999999999999999999999998777777776 899999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 392 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 392 ~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
.++ +++.| +..+++|+++|+++.+++++|..++.++|.+....++.+.+
T Consensus 84 ~~~---~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~ 132 (236)
T PRK09392 84 AAV---VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG 132 (236)
T ss_pred HHH---hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 987 66666 88999999999999999999999999999988766655544
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.60 E-value=7.3e-15 Score=151.78 Aligned_cols=190 Identities=16% Similarity=0.259 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhccCCcc-
Q 008665 8 AITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRA- 85 (558)
Q Consensus 8 ~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~~~~~~- 85 (558)
.+.+++.++-++|-+..+++|.. .|+ ..+++|+ --+||++|++||.+=+........+.
T Consensus 241 ~l~~vE~vCi~WFT~E~llR~~~---~P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~ 301 (477)
T KOG3713|consen 241 ILTYVETVCIAWFTFEYLLRFLV---APN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLK 301 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHc---Cch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHH
Confidence 47899999999999999999964 343 3778888 67999999999964433221111001
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH----HHHHHHHHHH-HHhhhhhhhhhhccCcccCCC
Q 008665 86 KVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALG----GAAYYLLCYI-VCSHQTREHIIDHKCHAMEGN 160 (558)
Q Consensus 86 ~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~----~~~~~ll~~~-l~~H~~~c~w~~~~c~~~~~~ 160 (558)
+.-+...++|++ |++||+|+++.-....|+-+--+.. .-+..|++|+ +.+-+++..-|+.--.
T Consensus 302 ~l~~~~~vvrvl-------R~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~----- 369 (477)
T KOG3713|consen 302 ELENAGLVVRVL-------RVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKD----- 369 (477)
T ss_pred HHhhhhhhHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 111111233322 3333333333333333332111111 1122222222 2233333333322110
Q ss_pred CCCcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 161 PEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTY 240 (558)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~ 240 (558)
...+.+..-..|+|||++|||||||||.+|.|...++++..+++.|+++.|+.|..+.+-
T Consensus 370 --------------------~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~n 429 (477)
T KOG3713|consen 370 --------------------EPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNN 429 (477)
T ss_pred --------------------CCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhh
Confidence 122225556679999999999999999999999999999999999999999988887776
Q ss_pred HHhhhHHH
Q 008665 241 LTSLTVRL 248 (558)
Q Consensus 241 l~~~~~~~ 248 (558)
+.......
T Consensus 430 F~~~y~~~ 437 (477)
T KOG3713|consen 430 FSMYYSEL 437 (477)
T ss_pred HHHHHHHH
Confidence 65544433
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.55 E-value=3.2e-13 Score=130.58 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=100.0
Q ss_pred ccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechhhhhhhcCC
Q 008665 322 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELLTWALDP 400 (558)
Q Consensus 322 ~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~sl~~~l~~ 400 (558)
+.+|++.++.++..++.+.|+||+.|+++||+++.+|||.+|.++++..+ +|++.+ +.++.+|++||+..+ +.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhh---ccC
Confidence 46899999999999999999999999999999999999999999988654 677776 899999999999976 443
Q ss_pred CCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 401 KSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 401 ~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
.+ .+..+++|.++|+++.+++++|.+++.++|++....++.
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 121 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQ 121 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 21 267899999999999999999999999999876544443
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.49 E-value=4.5e-13 Score=114.90 Aligned_cols=111 Identities=29% Similarity=0.545 Sum_probs=99.0
Q ss_pred ccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechhhhhhhc
Q 008665 320 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELLTWAL 398 (558)
Q Consensus 320 ~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~sl~~~l 398 (558)
+|..++++.++.++..++.+.+.+|+.|+.+|++++.+|||.+|.++++..+ +|++.+ +..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~ 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELAL---L 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHH---h
Confidence 4788999999999999999999999999999999999999999999988654 456666 889999999999977 4
Q ss_pred CCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 399 DPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 399 ~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
...+ +..+++|.++|+++.|+.++|..++.++|.+..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 4444 789999999999999999999999999997654
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.47 E-value=9.3e-13 Score=129.71 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=102.1
Q ss_pred hccCcccccccHHHHHHHHhhcce-eEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechh
Q 008665 315 VRRVPLFANMDERLLDAICERLKP-SLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEE 392 (558)
Q Consensus 315 l~~v~~F~~l~~~~l~~l~~~l~~-~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~ 392 (558)
+++.+.|..++++.++.+....+. +.|+||+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 555566667999999999988864 67999999999999999999999999999975 4678877 8889999999987
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008665 393 LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 448 (558)
Q Consensus 393 sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~ 448 (558)
++ +.+. +..+++|+++|+++.|++++|.+++.++|.+....++.+.
T Consensus 93 ~~---~~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~ 138 (235)
T PRK11161 93 AI---GSGQ-------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS 138 (235)
T ss_pred cc---cCCC-------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH
Confidence 55 3322 3468999999999999999999999999987775554433
No 11
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.46 E-value=5e-13 Score=130.93 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=93.8
Q ss_pred HHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCC
Q 008665 329 LDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLP 407 (558)
Q Consensus 329 l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~ 407 (558)
...|....+.+.|++|+.|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.||++||+.++ +++.|
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~---~~~~~----- 93 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIEL---IDKDH----- 93 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehh---hcCCC-----
Confidence 345777889999999999999999999999999999998865 4678877 899999999999987 66665
Q ss_pred CcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 008665 408 LSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHT 447 (558)
Q Consensus 408 ~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~ 447 (558)
++.+++|+++|+++.+++++|..++.++|.+....++.+
T Consensus 94 -~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l 132 (226)
T PRK10402 94 -ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFL 132 (226)
T ss_pred -CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHH
Confidence 889999999999999999999999999998766444433
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.43 E-value=3.3e-12 Score=110.07 Aligned_cols=112 Identities=25% Similarity=0.420 Sum_probs=98.1
Q ss_pred ccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechhhhhhhc
Q 008665 320 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELLTWAL 398 (558)
Q Consensus 320 ~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~sl~~~l 398 (558)
+|.+++++.++.++..++.+.+++|++|+++|++++.+|||.+|.++++..+ +|++.. +..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~ 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELAL---L 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhh---c
Confidence 4788999999999999999999999999999999999999999999988764 566655 899999999999976 4
Q ss_pred --CCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHH
Q 008665 399 --DPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSR 442 (558)
Q Consensus 399 --~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k 442 (558)
.+.+ +..+++|.++|+++.++.+++.....++|.+..+
T Consensus 76 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 115 (120)
T smart00100 76 TNSRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLLE 115 (120)
T ss_pred cCCCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHH
Confidence 2233 7789999999999999999999999999865443
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.42 E-value=5.1e-13 Score=126.85 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhccCCcchhhh
Q 008665 11 TFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRAKVFS 89 (558)
Q Consensus 11 ~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~ 89 (558)
+++.+++++|.+|+++++.+.... +++|+++ |.++|+++++|........... ..+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~-- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSWWNWFDFISVIPSIVSVILRSYG--SASA-- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS----HH--
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcChhhcccccccccccccccccccc--cccc--
Confidence 478999999999999999875331 5789998 7889999999995544321111 1100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCCcchhhH
Q 008665 90 TKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHQTREHIIDHKCHAMEGNPEFNFGIYL 169 (558)
Q Consensus 90 ~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~~~~~~~~~~g~~~ 169 (558)
...+++.++++ +.|++|+.+..+.+++....... ........++++.++.|..+|.++..............
T Consensus 59 -~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~----- 130 (200)
T PF00520_consen 59 -QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALIR-SFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPT----- 130 (200)
T ss_dssp -CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS------------
T ss_pred -cceEEEEEeec-ccccccccccccccccccccccc-ccccccccccccccccccccchhheecccccccccccc-----
Confidence 12233333222 22455544444444333322221 12223334445566788888887654322110000000
Q ss_pred HhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 008665 170 KAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTST-----YIQEIIFS-ILIGIAGLVLLALLIGNM 237 (558)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~-----t~~E~i~~-i~i~i~G~~lfa~lig~~ 237 (558)
+...++. ...+.++.|..|+||+++++|+.|+||..+. +..+.++. +++.+++.+++++++|.|
T Consensus 131 ~~~~~~~----~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 131 WDSENDI----YGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SS----S----STHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc----ccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 0000111 2456778899999999999999999999887 78999999 777777779999999976
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.42 E-value=1.2e-12 Score=108.24 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=79.1
Q ss_pred eEecCCCEEEecCCCCCeEEEEEeeEEEEEEecC-CceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 008665 339 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 417 (558)
Q Consensus 339 ~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~-g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt 417 (558)
+.|+||++|+++|++++++|||++|.++++..+. ++..+ +..+.+|++||+.++ +.+.+ +..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~---~~~~~------~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIEL---LTGKP------SPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHH---HHTSB------BSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceee---cCCCc------cEEEEEEcc
Confidence 6799999999999999999999999999987664 44444 789999999999977 44445 889999999
Q ss_pred eEEEEEeCHHHHHHHHHHhHH
Q 008665 418 EVEAFSLRAEELKFVASQFRR 438 (558)
Q Consensus 418 ~~el~~L~~~d~~~l~~~~p~ 438 (558)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999994
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.38 E-value=2.2e-11 Score=117.10 Aligned_cols=123 Identities=22% Similarity=0.366 Sum_probs=103.6
Q ss_pred ccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechhhh
Q 008665 316 RRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELL 394 (558)
Q Consensus 316 ~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~sl 394 (558)
...+.|..++++....+....+.+.+++|+.|+++||+++.+|+|.+|.++++..+ +|++.+ +.++.+|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34566666777777777788999999999999999999999999999999998754 577777 889999999999987
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 395 TWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 395 ~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+...| +..+++|+++|+++.+++++|..++.+.|.+....++.+.+
T Consensus 81 ---~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 81 ---LGGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred ---hcCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 55445 78999999999999999999999887788776655554444
No 16
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.38 E-value=8.5e-14 Score=137.17 Aligned_cols=195 Identities=15% Similarity=0.272 Sum_probs=113.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhc
Q 008665 2 DVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYL 80 (558)
Q Consensus 2 ~~~~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~ 80 (558)
|..+.-.++++++.+-++|-++.+++|... |+ ..-+.|. .-+||++|++|+-.-+..-..
T Consensus 248 ~~~f~dPFFiVEt~CIiWFtfEllvRf~aC---Ps----------------K~~Ff~nimNiIDiVaI~PyFitlgtela 308 (507)
T KOG1545|consen 248 DTKFTDPFFIVETLCIIWFTFELLVRFFAC---PS----------------KATFFRNIMNIIDIVAIIPYFITLGTELA 308 (507)
T ss_pred ccccCCchHhHHHHHHHHHhHHHHHHHhcC---cc----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345666789999999999999999999754 32 1224444 568999999999543322222
Q ss_pred cCC--c--chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH--HHHHHHHHHHH-hhhhhhhhhhcc
Q 008665 81 SDT--R--AKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGG--AAYYLLCYIVC-SHQTREHIIDHK 153 (558)
Q Consensus 81 ~~~--~--~~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~--~~~~ll~~~l~-~H~~~c~w~~~~ 153 (558)
... + ....-..-+||++|+. |++||+++.+.-+ -..++-+|.-++ -+-.|+.++++ .-.++...|..
T Consensus 309 ~q~g~g~~gqqaMSlAILRViRLV----RVFRIFKLSRHSk-GLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFA- 382 (507)
T KOG1545|consen 309 EQQGGGGQGQQAMSLAILRVIRLV----RVFRIFKLSRHSK-GLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFA- 382 (507)
T ss_pred HhhcCCccchhhhhHHHHHHHHHH----HHhhheeeccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeee-
Confidence 111 1 1222233455555433 4455554443211 111222221111 12222222211 11122222211
Q ss_pred CcccCCCCCCcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHH
Q 008665 154 CHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALL 233 (558)
Q Consensus 154 c~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~l 233 (558)
+.+ +.++.+...-.++||+++|||||||||..|.|.+.+++..+++|.|++-.|+.
T Consensus 383 ---Ead---------------------e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALP 438 (507)
T KOG1545|consen 383 ---EAD---------------------EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALP 438 (507)
T ss_pred ---ecC---------------------CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccc
Confidence 111 13344445557999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhhh
Q 008665 234 IGNMQTYLTSLT 245 (558)
Q Consensus 234 ig~~~~~l~~~~ 245 (558)
+..+.+-+....
T Consensus 439 VPVIVsNFnyFY 450 (507)
T KOG1545|consen 439 VPVIVSNFNYFY 450 (507)
T ss_pred ccEEEeccccee
Confidence 776665444333
No 17
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.30 E-value=4.3e-11 Score=113.91 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=96.1
Q ss_pred CCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEE
Q 008665 344 GTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAF 422 (558)
Q Consensus 344 ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~ 422 (558)
|+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||+.++ +.+.+ ..+..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~---~~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSL---ITGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeee---ccCCC----CccceEEEEecceEEE
Confidence 789999999999999999999998864 4578877 899999999999877 55543 1134789999999999
Q ss_pred EeCHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHhhh
Q 008665 423 SLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQRLK 482 (558)
Q Consensus 423 ~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~~ 482 (558)
.+++++|+.++.++|.+....++.+.+ ..+.....+..........|... .+..-
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~-~L~~l 126 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----RILQTEMMIETLAHRDMGSRLVS-FLLIL 126 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 999999999999999988877665544 44333333334455555666666 55443
No 18
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.28 E-value=7.3e-11 Score=115.94 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred HHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCC
Q 008665 330 DAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPL 408 (558)
Q Consensus 330 ~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~ 408 (558)
.+++...+.+.|++|+.|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+. ...+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~------~~~~------ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLE------SGST------ 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceeccc------CCCc------
Confidence 45667788899999999999999999999999999999865 4677766 8899999999953 2222
Q ss_pred cccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 409 STRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 409 s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+..+++|+++|+++.+++++|+.++.++|.+....++.+.+
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 67899999999999999999999999999888766665554
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=1.3e-11 Score=127.54 Aligned_cols=128 Identities=27% Similarity=0.460 Sum_probs=109.9
Q ss_pred HhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 310 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 310 l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
-+.++|+.+|+|++++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.+.-+.+..+..||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 45788999999999999999999999999999999999999999999999999999998766553332338999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcce-EEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 390 GEELLTWALDPKSVTNLPLSTRTVRALDE-VEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 390 Ge~sl~~~l~~~~~~~l~~s~~tv~Alt~-~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
||-+| +.... +++++.|... ++++.|+++.|..+.....++..+....
T Consensus 349 GE~al---~~edv------RtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D 397 (732)
T KOG0614|consen 349 GERAL---LGEDV------RTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGD 397 (732)
T ss_pred hHHHh---hccCc------cchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccc
Confidence 99987 44433 8899999987 9999999999999998888766544333
No 20
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.23 E-value=2.2e-10 Score=109.95 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=93.3
Q ss_pred hcceeEecCCCEEEecCC--CCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCccc
Q 008665 335 RLKPSLCTEGTCVVREGD--PVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTR 411 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~eGd--~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~ 411 (558)
.++.+.|+||++|+++|| +++.+|+|++|.|+++.. .+|++.+ +..+.+|++||+.++ .. .+ ++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~---~~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEAL---AG-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHh---cC-CC------CCc
Confidence 467889999999999999 779999999999999865 4688887 899999999999754 32 33 678
Q ss_pred EEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHhhh
Q 008665 412 TVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQRLK 482 (558)
Q Consensus 412 tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~~ 482 (558)
+++|+++|+++.|+.++| .|++....++++.+...+. .+.+..........|... .+..-
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~----~~~~~~l~~~~~~~Rla~-~Ll~l 132 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARA----YESIYRLVGQRLKNRIAA-ALLEL 132 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHH----HHHHHHHHhCchHHHHHH-HHHHH
Confidence 999999999999999987 4666666666655543332 233333345555566665 54443
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.20 E-value=1.2e-10 Score=124.21 Aligned_cols=113 Identities=24% Similarity=0.344 Sum_probs=98.7
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
.+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+++.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456789999999999999999999999999999999999999999999999999998765433544 788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhH
Q 008665 392 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFR 437 (558)
Q Consensus 392 ~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p 437 (558)
. + .+.+ +..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGSV------HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCCC------cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 3 3343 78999999999999999999998876655
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.18 E-value=7e-11 Score=122.82 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=77.9
Q ss_pred CcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008665 182 SGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQW 261 (558)
Q Consensus 182 ~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~ 261 (558)
.++-+..|..++||++.|+||+||||.+|.|...++++.++.++|+.+||+.-|.+++=+.-+-. ++.|. ++|
T Consensus 263 ~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~RQ-----KHf 335 (654)
T KOG1419|consen 263 TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHRQ-----KHF 335 (654)
T ss_pred ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHHH-----HHH
Confidence 56678899999999999999999999999999999999999999999999999988886642221 22222 477
Q ss_pred HHhCCCCHhHHHHHHHHHHH
Q 008665 262 MHHRWLPQDLRERVRRYDHF 281 (558)
Q Consensus 262 m~~~~lp~~L~~rV~~y~~y 281 (558)
-+.++.-..|.+-..+||.-
T Consensus 336 ~rrr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 336 NRRRNPAASLIQCAWRYYAA 355 (654)
T ss_pred HhhcchHHHHHHHHHHHHhc
Confidence 88888889999999988754
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=5.1e-10 Score=117.56 Aligned_cols=116 Identities=17% Similarity=0.292 Sum_probs=103.8
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
.++++++|.|..++++.+++|...++...|.|||.|+..|.|.+.+|+|.+|.|++...+| + . +..+.+||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g-~--v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG-E--V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC-e--e--eeeeccCccccc
Confidence 5678999999999999999999999999999999999999999999999999999887544 3 2 799999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 392 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 392 ~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
.++ ++..+ ......|.+|+-+|.|+++.|.+++.++|.+++
T Consensus 81 ~~l---~~~~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSL---FTELN------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhh---cccCC------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 988 44443 456788888999999999999999999998876
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=2.7e-10 Score=113.28 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=99.6
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
.+.+++.-+|.+++++.+..+...|.++.++.|+.|+++|+.++.+|+|.+|.+.++.. |+- +..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchhh
Confidence 56677788999999999999999999999999999999999999999999999999975 221 689999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 392 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 392 ~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
.++ +-+.| +.+|+.|.+++.+|.|++..|..+.-.....+.
T Consensus 195 lAL---myn~P------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkr 235 (368)
T KOG1113|consen 195 LAL---MYNPP------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKR 235 (368)
T ss_pred hHh---hhCCC------cccceeeccccceEEEeeceeEEEeeccchhhh
Confidence 998 44454 899999999999999999999877654443333
No 25
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.09 E-value=1.7e-10 Score=119.49 Aligned_cols=128 Identities=20% Similarity=0.366 Sum_probs=108.0
Q ss_pred HHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCC
Q 008665 307 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEG 386 (558)
Q Consensus 307 ~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 386 (558)
...+..+.++...+.++++.+.+..++.+|-++.|.+|++|++|||+++++|.+..|++.+.. +|+- ++.+++|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCCc
Confidence 345567778888899999999999999999999999999999999999999999999999875 3432 7999999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 387 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 387 ~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
..|||.+. |-+.+ ++++|+|+++|.+|+|.++.|+.++...-..+.....+-.|
T Consensus 222 tvFGELAI---Lynct------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 222 TVFGELAI---LYNCT------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred hhhhHHHH---HhCCc------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 44444 89999999999999999999999998766544444433333
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.94 E-value=2.9e-09 Score=86.23 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 186 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 186 ~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
...|..++||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999999999999999999999999999999999999875
No 27
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.89 E-value=3.3e-11 Score=119.96 Aligned_cols=178 Identities=18% Similarity=0.346 Sum_probs=107.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhccCC
Q 008665 5 LAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDT 83 (558)
Q Consensus 5 ~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~~~~ 83 (558)
.+..++++++.+-++|..+-++++..+ |+ ..|++|+ .=+||+++++|+.. -+++++.
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYi---gLv~t~N 282 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYI---GLVMTDN 282 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhhe---EEEecCC
Confidence 455677778888888888888887643 33 4788999 78999999999942 2333332
Q ss_pred --cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhccCcccCCCC
Q 008665 84 --RAKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHQTREHIIDHKCHAMEGNP 161 (558)
Q Consensus 84 --~~~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~~~~~~ 161 (558)
-+..+.+.|++|++ |+++..+-.+-+ +..|+-.+....-.-+.++...+++-+++...++..
T Consensus 283 ~DVSGaFVTLRVFRVF-------RIFKFSRHSQGL-RILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAE-------- 346 (632)
T KOG4390|consen 283 EDVSGAFVTLRVFRVF-------RIFKFSRHSQGL-RILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAE-------- 346 (632)
T ss_pred ccccceeEEEEeeeee-------eeeeeccccccc-chhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh--------
Confidence 34445555555422 222222221111 122322222111111222222233334443333211
Q ss_pred CCcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008665 162 EFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNM 237 (558)
Q Consensus 162 ~~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~ 237 (558)
.|.+.+-+.....++|+.++||||+||||..|.|....+|..++.+.|+++.|+.+..+
T Consensus 347 -----------------Kg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvI 405 (632)
T KOG4390|consen 347 -----------------KGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVI 405 (632)
T ss_pred -----------------ccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEE
Confidence 11244555566679999999999999999999999999999999999999988755433
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.6e-08 Score=100.82 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=105.5
Q ss_pred HHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCC
Q 008665 306 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKE 385 (558)
Q Consensus 306 I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~ 385 (558)
-++.|+.+.|+.+|++..++......++..+.++.|.+|+.|+.+|++++.+|+|.+|.|.+....+| .. + .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~--v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VE--V-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eE--E-Eech
Confidence 34568899999999999999999999999999999999999999999999999999999987765544 22 4 9999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHH
Q 008665 386 GDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRR 438 (558)
Q Consensus 386 G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~ 438 (558)
||+|||.++ +...| +.+++.|.++..+..++++.|+.|+.-.-+
T Consensus 308 ~dyfge~al---~~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 308 GDYFGELAL---LKNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhhcchHHH---Hhhch------hhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 999999988 56666 889999999999999999999999876553
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.77 E-value=6.3e-09 Score=108.33 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008665 184 QFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMH 263 (558)
Q Consensus 184 ~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~ 263 (558)
+.--.|..|.|+-++||+||||||+...|...++|.+|..++|+.+||-.+..+..++.+-.+.--+|....- =+
T Consensus 284 ~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kk 358 (1103)
T KOG1420|consen 284 NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KK 358 (1103)
T ss_pred cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----Ce
Confidence 3345699999999999999999999999999999999999999999999999999999876655444432110 00
Q ss_pred hCCC-CHhHHHHHHHHHHHHHHhhc-CCC-hHHHHhcCChhHHHHHHHHHhHhhhccCccccc--ccHHHH
Q 008665 264 HRWL-PQDLRERVRRYDHFKWLETR-GVD-EEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFAN--MDERLL 329 (558)
Q Consensus 264 ~~~l-p~~L~~rV~~y~~y~w~~~~-~~~-e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~--l~~~~l 329 (558)
|--+ -.-..+.|..|++---.+.+ .+| |-.+|...||+|.-|= ++.+.+.++.+|++ |++-.+
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleg---lfkrhft~veffqgtvmnp~dl 426 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEG---LFKRHFTQVEFFQGTVMNPHDL 426 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHH---HHhhheeeEEEecccccChhhh
Confidence 1000 11123445555544333333 455 4456899999986653 45566778888886 454443
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.38 E-value=6.8e-06 Score=84.82 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=93.1
Q ss_pred HHHHhhhhhhhhhhccCcccCCCCCCcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHH
Q 008665 138 YIVCSHQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEII 217 (558)
Q Consensus 138 ~~l~~H~~~c~w~~~~c~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i 217 (558)
.+.++-|+...|...-|.-+.+ +......|..++|....|..++||||+.|.|...+.
T Consensus 259 vftl~~Wii~sW~~~~cER~~~----------------------~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~ 316 (489)
T KOG3684|consen 259 VFTLSLWIIASWMLRQCERYHD----------------------SQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRG 316 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------chhhHHHHHhhHHHHHHHHhhcccCcccCCccccch
Confidence 3445667777787777743111 222567799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Q 008665 218 FSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWL 284 (558)
Q Consensus 218 ~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~ 284 (558)
.+++..++|.++-|.+++.++--+. ...--+.+++||-..++.+++++-..+=++..|.
T Consensus 317 v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 317 VALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMDTQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876443 2233356889999999999999888888888887
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.33 E-value=7.1e-06 Score=86.50 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 187 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYL 241 (558)
Q Consensus 187 ~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l 241 (558)
..+..|+||++.|+||+||||+.|.+...++++++++++|+.+|++.++.+...+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999998887644
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.18 E-value=2.4e-06 Score=94.03 Aligned_cols=114 Identities=22% Similarity=0.335 Sum_probs=99.0
Q ss_pred HHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCC
Q 008665 327 RLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTN 405 (558)
Q Consensus 327 ~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~ 405 (558)
.++..+-..+......+|+.++++||..+++|+|..|.+++... .+|+... +..++.||.+|+... +..+|
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~--- 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQP--- 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCC---
Confidence 35566667788899999999999999999999999999998755 4555545 799999999999977 66676
Q ss_pred CCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008665 406 LPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 451 (558)
Q Consensus 406 l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~ 451 (558)
+..|+.|+.++|+..|+..-|..+..+||.+-.+..+..++.+
T Consensus 571 ---R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 ---RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred ---ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999998888888777766
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.58 E-value=0.00049 Score=76.38 Aligned_cols=110 Identities=11% Similarity=0.091 Sum_probs=90.5
Q ss_pred HHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechh-hhhhhcCCCCCCCCCCc
Q 008665 332 ICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEE-LLTWALDPKSVTNLPLS 409 (558)
Q Consensus 332 l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~-sl~~~l~~~~~~~l~~s 409 (558)
++.+++...+..||+|++.|++.+.+|.+.+|.+.++..+ +|++.. +....+|+-|... +++-.+...|+ +..
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiLd~l~~~ps---~~~ 185 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSILDSLPGFPS---LSR 185 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHHHhccCCCc---ccc
Confidence 4477788889999999999999999999999999988765 477766 8999999888777 77444555543 346
Q ss_pred ccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 410 TRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 410 ~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
+..++|.++|.+..++...|..+...||+-..+.+|-
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQv 222 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQV 222 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHHHH
Confidence 7889999999999999999999999999855555554
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00016 Score=77.20 Aligned_cols=60 Identities=20% Similarity=0.409 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 247 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 247 (558)
.+..++|++++++||+|||+++|.|..+++++|+..++|+-++..++++++..+...-..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566799999999999999999999999999999999999999999999999988755443
No 35
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.30 E-value=0.00083 Score=69.27 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhccccCCC--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 186 LSKLFYCLWFGLQNLSTLGQGL--KTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 186 ~~~Y~~slywal~tlttvGyGd--i~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
...+..+|++++.|+||+|||. ++|....-.+++++-+++|+++.|+++|.+-.=++.
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568899999999999999998 678888888888999999999999999998876654
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.27 E-value=0.0052 Score=58.55 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=80.5
Q ss_pred HHHHHHHhhcceeEecCCCEE-EecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCC
Q 008665 327 RLLDAICERLKPSLCTEGTCV-VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTN 405 (558)
Q Consensus 327 ~~l~~l~~~l~~~~~~~ge~I-i~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~ 405 (558)
...+++....++..+.+|..+ .-+.+..+..+++.+|.+.+. ..++ .. +....+...||-... +.+..
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~--- 81 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND--- 81 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC---
Confidence 455677777888999999997 433344467999999999994 3333 22 677888889996543 33332
Q ss_pred CCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 008665 406 LPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQ 464 (558)
Q Consensus 406 l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~~~~~~~~~~~q 464 (558)
..+.++|.++|+++.++.+++.++++++. -|+.++..++.
T Consensus 82 ---~~~~l~ae~~c~~~~i~~~~~~~iie~~~----------------LW~~~~~~l~~ 121 (207)
T PRK11832 82 ---IPYKLISEGNCTGYHLPAKQTITLIEQNQ----------------LWRDAFYWLAW 121 (207)
T ss_pred ---ceEEEEEcCccEEEEeeHHHHHHHHHHhc----------------hHHHHHHHHHH
Confidence 45789999999999999999999999876 67777766544
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.74 E-value=0.016 Score=51.96 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=81.4
Q ss_pred ccHHHHHHHHhh-cceeEecCCCEEEecC-CCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCC
Q 008665 324 MDERLLDAICER-LKPSLCTEGTCVVREG-DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPK 401 (558)
Q Consensus 324 l~~~~l~~l~~~-l~~~~~~~ge~Ii~eG-d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~ 401 (558)
.+....+.|+.+ .+.....+|+.-.-|| .+.+.+-++++|++++... |+- +..+.|.+|...-.+ ..-+
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW---~s~~ 85 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEW---ESLR 85 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhh---hccc
Confidence 577777888877 6667789999999998 5678999999999998763 332 677777777766544 1111
Q ss_pred CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 402 SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 402 ~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
++ .-..-..|+.|.++|..+..+++.++.++...|-+++
T Consensus 86 ~s-~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~ 124 (153)
T PF04831_consen 86 PS-EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA 124 (153)
T ss_pred cC-CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH
Confidence 11 1123578999999999999999999999999985443
No 38
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.01 Score=62.68 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhccccCCCcccCchhhHHHHHH
Q 008665 189 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSIL 221 (558)
Q Consensus 189 Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~ 221 (558)
.+.|+|+.++|.+||||||..|....-.++..+
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi 250 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVI 250 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHH
Confidence 456899999999999999999987665554443
No 39
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.50 E-value=1.2 Score=52.79 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008665 214 QEIIFSILIGIAGLVLLALLIGNMQTYLTSL 244 (558)
Q Consensus 214 ~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~ 244 (558)
+-..|..+++++..++.-++|+.+...++..
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777888777776644
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.055 Score=54.23 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhccccCCCcccC-------chhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTST-------YIQEII-FSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~-------t~~E~i-~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
.|+.|+|+.+.|+||+|+||.++- +..+.+ ++.+..++|+.+++-+++-+.-.+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999998753 234444 4555667888887777765554443
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.36 E-value=0.034 Score=60.25 Aligned_cols=113 Identities=22% Similarity=0.369 Sum_probs=88.1
Q ss_pred HhHhhhccCcccccccHHHHHHHHhhcceeEe-cCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCe
Q 008665 310 LCLNLVRRVPLFANMDERLLDAICERLKPSLC-TEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDF 388 (558)
Q Consensus 310 l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~-~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~ 388 (558)
...+++.+.|-|.+|+-..-+++|..|..... ..|.+|+..|+.-+..+.|+.|.|++...+|.+ ..++-|+-
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccc
Confidence 34788899999999999999999998877665 689999999999999999999999999887764 46777888
Q ss_pred echhhhhhhcCCCCCCCCCCcccEE-EEcceEEEEEeCHHHHHHHHHHhH
Q 008665 389 CGEELLTWALDPKSVTNLPLSTRTV-RALDEVEAFSLRAEELKFVASQFR 437 (558)
Q Consensus 389 fGe~sl~~~l~~~~~~~l~~s~~tv-~Alt~~el~~L~~~d~~~l~~~~p 437 (558)
||...- .+.+. ..-.+ .-+.||+...+...|+-.++.+-.
T Consensus 352 FG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 995521 11110 11112 246789999999999999887543
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.0045 Score=61.74 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 187 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQ 238 (558)
Q Consensus 187 ~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~ 238 (558)
.++.-+|||+.+.+||+|||-.+|.|.+.++|+|+..++|+-+--+.+..++
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 3456699999999999999999999999999999999999866554443333
No 43
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=93.97 E-value=0.23 Score=51.08 Aligned_cols=63 Identities=17% Similarity=0.385 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcc--cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008665 185 FLSKLFYCLWFGLQNLSTLGQGLKT--STYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 247 (558)
Q Consensus 185 ~~~~Y~~slywal~tlttvGyGdi~--p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 247 (558)
....+..+|-|++-|=||+|||--. ..-+.-++..++-+|+|+++-|+++|.+-.=+..-.+|
T Consensus 109 nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 109 NVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred eccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 3455667888999999999999743 33455566777788999999999999987766544444
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.72 E-value=3.5 Score=47.41 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcce-eeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHH
Q 008665 9 ITTFRSILDCIYSCRIPFQFRT-AYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFL 66 (558)
Q Consensus 9 ~~~~~~i~D~~f~~Di~l~f~t-~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDll 66 (558)
+++-++|+-++|+++|.++-.. |.+- || ..|+++ |-.+|.+
T Consensus 1158 ltlsnyIFtaIfV~Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1158 LTLSNYIFTAIFVVEMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred EEecchHHHHHHHHHHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 3444577888888888776542 4332 33 679987 8766654
No 45
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=93.37 E-value=0.02 Score=60.97 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhccccCCCcccCchhhH--------HHHHHHHHHHHHHHHHHHH
Q 008665 187 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEI--------IFSILIGIAGLVLLALLIG 235 (558)
Q Consensus 187 ~~Y~~slywal~tlttvGyGdi~p~t~~E~--------i~~i~i~i~G~~lfa~lig 235 (558)
..|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 568889999999999999999999998755 5788888888888887773
No 46
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.94 E-value=3 Score=47.40 Aligned_cols=205 Identities=16% Similarity=0.139 Sum_probs=102.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH-----H-HhhhhHHHHHhHHHHHHHHHHHHHHhhhhhh-hhhhccC-cccCCC
Q 008665 89 STKEALPLLIILQYVPRILRIFPLISE-----L-KKTVGVFVESALGGAAYYLLCYIVCSHQTRE-HIIDHKC-HAMEGN 160 (558)
Q Consensus 89 ~~~~~lr~i~~~q~l~Rl~ri~~l~~~-----i-~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c-~w~~~~c-~~~~~~ 160 (558)
.+.+++|+.|++.++.|+-+...+.-+ + ....-+....||+||+++++...--.+...- +|....| .....+
T Consensus 202 ~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~ 281 (727)
T KOG0498|consen 202 LLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYN 281 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCc
Confidence 445667777666666666665554431 1 1112223345888887766654432222222 4543321 111123
Q ss_pred CCCcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 161 PEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTY 240 (558)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~ 240 (558)
..|+||.+.++.+ ..+ .-=|.-+=+.|+=++.. +++.-|+ ...-++++++-+++...+++-+-.-+++.
T Consensus 282 ~~~~fg~~s~~~k--Y~~---aLyw~l~tLstvG~g~~--~s~~~~E----~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 282 LSFTFGIYSLALK--YVY---ALYWGLSTLSTVGYGLV--HANNMGE----KIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred ccccccchhHHHH--HHH---HHHHHhhHhhhccCCcc--CCCCcHH----HHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 4477898887642 110 00011112233322222 3333222 34456777777777777777766666664
Q ss_pred HHhhh------HHHHHHH-------HHHHHHHHHHHh--------------CCCCHhHHHHHHHHHHHHHHhhcCCChHH
Q 008665 241 LTSLT------VRLEEMR-------IKRRDSEQWMHH--------------RWLPQDLRERVRRYDHFKWLETRGVDEEH 293 (558)
Q Consensus 241 l~~~~------~~~~~~~-------~k~~~~~~~m~~--------------~~lp~~L~~rV~~y~~y~w~~~~~~~e~~ 293 (558)
-.... ...++|- .-++.+.+|+.+ +++|++||+.|.+|+-..-.+ .-.
T Consensus 351 tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~-----~vp 425 (727)
T KOG0498|consen 351 TSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVR-----KVP 425 (727)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHh-----hCc
Confidence 44222 2223321 122344444443 789999999999999776542 223
Q ss_pred HHhcCChhHHHHHHHH
Q 008665 294 LVQNLPKDLRRDIKRH 309 (558)
Q Consensus 294 il~~LP~~Lr~~I~~~ 309 (558)
+++.+++.+=..|...
T Consensus 426 LF~~md~~~L~al~~r 441 (727)
T KOG0498|consen 426 LFAGMDDGLLDALCSR 441 (727)
T ss_pred hhhcCCHHHHHHHHHH
Confidence 4455555444444333
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.58 E-value=0.33 Score=52.96 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeee
Q 008665 299 PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFY 378 (558)
Q Consensus 299 P~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~ 378 (558)
|+.||.-....--...+++...|.++-..-+.++|.......++-+.++++.|+++.+.|++++|.|-+. |
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g----- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G----- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-----
Confidence 4455544443333446778889999999999999999999999999999999999999999999998542 1
Q ss_pred eeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCH
Q 008665 379 NRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRA 426 (558)
Q Consensus 379 ~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~ 426 (558)
..+.|-.+||-. ..+ | ++.++-.++++|..+++.
T Consensus 94 --qi~mp~~~fgkr-----~g~----~---r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKR-----TGQ----N---RTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred --ceecCccccccc-----ccc----c---cccceeeecccceeeeec
Confidence 234455566653 111 1 778888899999998843
No 48
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=85.24 E-value=85 Score=36.89 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhH
Q 008665 265 RWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCL 312 (558)
Q Consensus 265 ~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~ 312 (558)
.++|+.|+..|..+...... ..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 47899999999887655433 23357888998888888777643
No 49
>COG4709 Predicted membrane protein [Function unknown]
Probab=84.06 E-value=5.8 Score=37.01 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhh--cCCChHHHHhcC--ChhHHHHHHHHHhHhhhccCcccccccHH
Q 008665 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLET--RGVDEEHLVQNL--PKDLRRDIKRHLCLNLVRRVPLFANMDER 327 (558)
Q Consensus 254 k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~--~~~~e~~il~~L--P~~Lr~~I~~~l~~~ll~~v~~F~~l~~~ 327 (558)
-++++++|++ ++|++.+..+..||+-.+.+. .|.+|+++.++| |.++-+|+....-.+..+.-|-+.+.+..
T Consensus 6 fL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 6 FLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 3456777776 899999999999988887744 478899999988 77888888777766666666666665543
No 50
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.76 E-value=40 Score=38.48 Aligned_cols=73 Identities=25% Similarity=0.366 Sum_probs=52.6
Q ss_pred ccccCCCcccC--c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhCCCCHhHHH
Q 008665 201 STLGQGLKTST--Y----IQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL-EEMRIKRRDSEQWMHHRWLPQDLRE 273 (558)
Q Consensus 201 ttvGyGdi~p~--t----~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~~~~~k~~~~~~~m~~~~lp~~L~~ 273 (558)
.|+|+||.... + ..-.+|.+++.++.++++-.+|+.|++......... ++|+.+.-. --.|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHH
Confidence 57999997533 2 345667777778888888899999999887766655 667654443 345667888888887
Q ss_pred H
Q 008665 274 R 274 (558)
Q Consensus 274 r 274 (558)
+
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 7
No 51
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=78.40 E-value=1.2e+02 Score=35.03 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHH
Q 008665 213 IQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR-LEEMRIK 254 (558)
Q Consensus 213 ~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~-~~~~~~k 254 (558)
.+-.+|.++..++.+++.-.+|+.|.+..+..... .++|+-.
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~ 629 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQ 629 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence 45667777777777778888888888877765544 3444433
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.55 E-value=14 Score=34.54 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--hcCCChHHHHhcC--ChhHHHHHHHHH
Q 008665 254 KRRDSEQWMHHRWLPQDLRERVRRYDHFKWLE--TRGVDEEHLVQNL--PKDLRRDIKRHL 310 (558)
Q Consensus 254 k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~--~~~~~e~~il~~L--P~~Lr~~I~~~l 310 (558)
-+++++++++ ++|++-++.+.+||+-...+ ..|.+|+++.++| |.++-+++....
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 4566778886 59999999999999888774 4578899999998 777777776554
No 53
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.56 E-value=74 Score=39.89 Aligned_cols=49 Identities=20% Similarity=0.435 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHH
Q 008665 5 LAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQL 74 (558)
Q Consensus 5 ~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i 74 (558)
+...+.+-+.+.-.+|.+++.+.... .++ +.|.++ |.++|++-+. +..+
T Consensus 471 ~~~~l~~~~~vF~~lF~~Em~~ki~a--l~~------------------~~yF~~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 471 RNYLLYLGNVVFTGLFTVEMILKIYA--LGP------------------RNYFRRGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--cCc------------------HHHHhhhcchheEEEEe-hhhH
Confidence 34556677777778888888776532 221 457776 8889988887 5443
No 54
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.03 E-value=23 Score=44.05 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCH
Q 008665 6 AAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPI 71 (558)
Q Consensus 6 ~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl 71 (558)
...+...+.+.-.+|.+.|+++... .|... |.++ |.++|++-+.-.
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~~---------y~rn~w~~lDf~Vv~vs 917 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWIA-----------YGFFF---------YFRNAWNWLDFVVVIVS 917 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHH---------HHhhHHhhhhHHHhhhH
Confidence 4556788889999999999998753 24321 9998 999998876644
No 55
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=73.76 E-value=5.5 Score=30.40 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=33.1
Q ss_pred eEecCCCEEEecCCCCC-eEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 339 SLCTEGTCVVREGDPVV-EMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 339 ~~~~~ge~Ii~eGd~~~-~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
..+.||+..-..-.+.. ++++|++|.+.+. .++ + ...+.+||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~-~-----~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG-E-----RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT-E-----EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc-E-----EeEccCCEEE
Confidence 46778887766666666 9999999999887 333 3 4678888876
No 56
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=72.35 E-value=23 Score=31.12 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=44.0
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEc
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL 416 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Al 416 (558)
....+.||..+-..-....++++|++|.+.+...++|+ ...+.+||.+- +++. ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~-------~~~~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYA-------LDKH-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEE-------ECCC-------CcEEEEcC
Confidence 34567888755432222247999999999876333344 46799999875 2222 23556656
Q ss_pred ceEEEEEe
Q 008665 417 DEVEAFSL 424 (558)
Q Consensus 417 t~~el~~L 424 (558)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88887765
No 57
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=72.13 E-value=6.4 Score=33.61 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=33.9
Q ss_pred CCCHhHHHHHHHHHHHHHHh----------hcCCChHHHHhcCChhHHHHHHHH
Q 008665 266 WLPQDLRERVRRYDHFKWLE----------TRGVDEEHLVQNLPKDLRRDIKRH 309 (558)
Q Consensus 266 ~lp~~L~~rV~~y~~y~w~~----------~~~~~e~~il~~LP~~Lr~~I~~~ 309 (558)
-||+++|..|...+.-.-.. ....|...++..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 68999999999888664321 123456889999999999999765
No 58
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.90 E-value=2.1e+02 Score=33.88 Aligned_cols=26 Identities=4% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcce-eeE
Q 008665 8 AITTFRSILDCIYSCRIPFQFRT-AYI 33 (558)
Q Consensus 8 ~~~~~~~i~D~~f~~Di~l~f~t-~y~ 33 (558)
++-+++-++-+||.++|+++... |.+
T Consensus 114 ilqafddfifaffavemv~kmvalgif 140 (1956)
T KOG2302|consen 114 ILQAFDDFIFAFFAVEMVLKMVALGIF 140 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46678888889999999998763 444
No 59
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=70.59 E-value=5.4 Score=35.48 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008665 184 QFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMH 263 (558)
Q Consensus 184 ~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~ 263 (558)
........++|+.+.+++. +-++..|.+...+++.++..++++++.+...|++.+++.... +....+.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHH
Confidence 4455677789888877775 335678999999999999999999999999999999886432 2233455555555
Q ss_pred hC
Q 008665 264 HR 265 (558)
Q Consensus 264 ~~ 265 (558)
+.
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 54
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=68.58 E-value=13 Score=34.11 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=41.7
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHH
Q 008665 353 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEE 428 (558)
Q Consensus 353 ~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d 428 (558)
..++++++++|.+.+-..++|+-. ...+.+||+|= +.+. ...+-++.++|.++.+.+..
T Consensus 47 ~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl-------vP~g-------vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL-------LPPH-------VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE-------eCCC-------CCcccccCCCcEEEEEEeCC
Confidence 379999999999998877766422 46899999883 2222 33455566788888887653
No 61
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=63.11 E-value=17 Score=33.83 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=43.9
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHH
Q 008665 352 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELK 430 (558)
Q Consensus 352 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~ 430 (558)
++.++++++++|.+.+...++|+-. ...+.+||+|= +.+. -..+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl-------lP~g-------vpHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL-------LPPH-------VPHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE-------eCCC-------CCcCCccCCCeEEEEEEeCCCC
Confidence 5678999999999998887766422 46899999883 2222 2334455788999999766444
No 62
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=58.82 E-value=59 Score=34.29 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008665 183 GQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 247 (558)
Q Consensus 183 ~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 247 (558)
....-.|+-++=+++..+.+++-++....-..-..+++++.+++++.|.+.|.+++..++-.+.-
T Consensus 95 q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii 159 (371)
T PF10011_consen 95 QVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNII 159 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34455688888888888887776665222223378888999999999999999999988755443
No 63
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=55.68 E-value=55 Score=24.43 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHH
Q 008665 214 QEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR---LEEMRIKRRDSEQWMH 263 (558)
Q Consensus 214 ~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~---~~~~~~k~~~~~~~m~ 263 (558)
+..++.+.+.++-+++++.+-+-+-.++++.+.. ..++++|.+.+-+.+.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3445555433333333333333444455543322 2257788887766543
No 64
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=53.65 E-value=60 Score=30.95 Aligned_cols=59 Identities=25% Similarity=0.494 Sum_probs=39.0
Q ss_pred cCChhHHHHHHHHHhHhhhccCccc-ccccHHHHHHHHhhcceeE--ecCCCEEEecCCCCCe
Q 008665 297 NLPKDLRRDIKRHLCLNLVRRVPLF-ANMDERLLDAICERLKPSL--CTEGTCVVREGDPVVE 356 (558)
Q Consensus 297 ~LP~~Lr~~I~~~l~~~ll~~v~~F-~~l~~~~l~~l~~~l~~~~--~~~ge~Ii~eGd~~~~ 356 (558)
.+|+. .+.+...+...+++-.-.| ...++...........+.. +.+|+.|+++|++.+.
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT~ 208 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVTE 208 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeCH
Confidence 45555 3444444444433322222 2456777888888899998 9999999999998763
No 65
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=50.68 E-value=27 Score=27.41 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=28.8
Q ss_pred ecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 341 CTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 341 ~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..||..=..-. .+++.+|++|.+.+... +|. ...+.+||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555443332 38899999999987754 555 46789999874
No 66
>PRK09108 type III secretion system protein HrcU; Validated
Probab=48.01 E-value=66 Score=33.67 Aligned_cols=68 Identities=7% Similarity=0.172 Sum_probs=45.8
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 210 STYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 210 p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
+......++.++..++..++.++++-.+..+.-+...-.++.+-..+++++-+|+..=+|+++.|+|+
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 44445556666666677777776666666666555555555666667788888888888888887764
No 67
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=46.12 E-value=27 Score=38.30 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCC
Q 008665 189 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWL 267 (558)
Q Consensus 189 Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~l 267 (558)
-+.|+||++.....-| -|+.|.....++...++-++-+++.+-..+|++..|. .|.|..-++.++..-++.++
T Consensus 596 ifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred hhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 4569999999887655 3999999999999999999998888888888888774 24455455555555555444
No 68
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=44.19 E-value=58 Score=29.11 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=36.8
Q ss_pred cceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecC-CceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~-g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||...-..-.+ ..++++|++|...+...+. +++.. ...+.+||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 445567788876544433 5789999999999876443 33433 57899999774
No 69
>PRK08156 type III secretion system protein SpaS; Validated
Probab=43.81 E-value=86 Score=32.92 Aligned_cols=66 Identities=11% Similarity=0.212 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 212 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 212 t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
.....+...+..++..++.++++-.+..+.-+...-.++.+-..+++++-.|+..=+++++.|+|+
T Consensus 169 ~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~ 234 (361)
T PRK08156 169 GLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444444455555555555555555555444444444555556777777777777777777663
No 70
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.41 E-value=1e+02 Score=32.34 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=39.8
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 210 STYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 210 p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
+......+...+..++..++.++++-.+..+.-+...-.++.+-..+++++-.|+..=+|+++.|+|+
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~ 246 (359)
T PRK05702 179 LEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQ 246 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33444455555555555555555555555555444444444555556777777777777777777653
No 71
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.83 E-value=6.6e+02 Score=29.48 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=11.4
Q ss_pred HHhhhh-hhHHHHHhh
Q 008665 54 RRYFRR-LFLVDFLSV 68 (558)
Q Consensus 54 ~~Ylk~-~F~iDlls~ 68 (558)
++|+++ |.++|++-.
T Consensus 493 ~~y~~s~wN~ld~~i~ 508 (798)
T KOG3599|consen 493 GRYVRSKWNWLDLAIV 508 (798)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 589998 988887543
No 72
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=40.81 E-value=99 Score=32.33 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=41.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHH
Q 008665 211 TYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRY 278 (558)
Q Consensus 211 ~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y 278 (558)
......+...+..+++.++.++++-.+..++-+...-.++.+-..+++++-+|+..=+|+++.|+|+-
T Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 173 ACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34444455566666666655555555555554444444455556667888888888888888777643
No 73
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.53 E-value=60 Score=28.28 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=39.1
Q ss_pred cceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 336 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
+....+.||..+-.--.+ .....+|++|.+++... |+ ...+.+||++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEE
Confidence 445678899998887777 77999999999988775 44 467999999864
No 74
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=39.33 E-value=57 Score=27.78 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCHhHHHHHHHHHHHHHHhh---------cCC---C-hHHHHhcCChhHHHHHHHHHhHhh
Q 008665 266 WLPQDLRERVRRYDHFKWLET---------RGV---D-EEHLVQNLPKDLRRDIKRHLCLNL 314 (558)
Q Consensus 266 ~lp~~L~~rV~~y~~y~w~~~---------~~~---~-e~~il~~LP~~Lr~~I~~~l~~~l 314 (558)
-||+++|..|..-....-... .+- + ..++|..||+++|.+|...-....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 478999988854433321100 000 1 267999999999999988765443
No 75
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=39.18 E-value=1.2e+02 Score=31.74 Aligned_cols=67 Identities=7% Similarity=0.134 Sum_probs=40.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHH
Q 008665 212 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRY 278 (558)
Q Consensus 212 t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y 278 (558)
.....+...+..+++.++.++++-.+..+.-+...-.++.+-..+++++-+|+..=+|+++.|+|+-
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 173 GLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3333445555555555555554444445444444444455556667888888888888888887754
No 76
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=39.13 E-value=1.2e+02 Score=31.75 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=39.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 212 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 212 t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
.....+..++..+++.++.++++-.+..+.-+...-.++.+-..+++++-+|+..=+|+++.|+|+
T Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~ 239 (347)
T TIGR00328 174 QAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQ 239 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344455555555555555555555555555444444445555566778888888888888777664
No 77
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=39.13 E-value=29 Score=25.93 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=16.3
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008665 292 EHLVQNLPKDLRRDIKRHL 310 (558)
Q Consensus 292 ~~il~~LP~~Lr~~I~~~l 310 (558)
-+++++||.+|++++..++
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3588999999999998775
No 78
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=38.71 E-value=88 Score=25.40 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=44.0
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008665 335 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVR 414 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~ 414 (558)
......+.||..+=.......+..||++|.+.. +++ .+.+|++.=. .+ .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~-------p~-------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRL-------PP-------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE--------T-------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEe-------CC-------CCccccC
Confidence 345567889988888777888899999999852 222 3578887632 21 2667888
Q ss_pred EcceEEEEE
Q 008665 415 ALDEVEAFS 423 (558)
Q Consensus 415 Alt~~el~~ 423 (558)
+-++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 889998875
No 79
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.17 E-value=5e+02 Score=27.28 Aligned_cols=30 Identities=7% Similarity=0.304 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCHhHHHHHHHH
Q 008665 249 EEMRIKRRDSEQWMHHRWLPQDLRERVRRY 278 (558)
Q Consensus 249 ~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y 278 (558)
++.+-..+++++-+|+..=+|+++.|+|+=
T Consensus 218 k~lkMtKqEVKdE~K~sEGdPeVKsr~Rq~ 247 (363)
T COG1377 218 KKLKMTKQEVKDEYKQSEGDPEVKSRIRQM 247 (363)
T ss_pred HHccCcHHHHHHHHhhccCChhhhHHHHHH
Confidence 445555567788888888888888887743
No 80
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=38.13 E-value=1.2e+02 Score=32.16 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=36.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 211 TYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 211 ~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
......+..++..++..++.++++-.+..++-+...-.++.+-..+++++-+|+..=+++++.|+|+
T Consensus 180 ~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq 246 (386)
T PRK12468 180 VAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQ 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3333334444444444444444444444544433333444555556777777777777777777663
No 81
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=37.86 E-value=2e+02 Score=29.18 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=41.1
Q ss_pred HHHHhccccCCCcccCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHH
Q 008665 196 GLQNLSTLGQGLKTSTYIQEIIFSILIGI-AGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRER 274 (558)
Q Consensus 196 al~tlttvGyGdi~p~t~~E~i~~i~i~i-~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~r 274 (558)
++..++++|-+-..|. ++.++-. .+.+..+|+.-.+..+.-+...-..+++...+++++-.|..+=+++++.+
T Consensus 164 t~~~lp~CG~~C~~~V------v~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKsk 237 (349)
T COG4792 164 TFLYLPGCGLYCALPV------VSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSK 237 (349)
T ss_pred HHhhccccccchHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHH
Confidence 3455566665544442 2222222 22335566666666655444444455555566777777777777776665
Q ss_pred HHH
Q 008665 275 VRR 277 (558)
Q Consensus 275 V~~ 277 (558)
=|+
T Consensus 238 RRq 240 (349)
T COG4792 238 RRQ 240 (349)
T ss_pred HHH
Confidence 443
No 82
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=37.61 E-value=77 Score=27.68 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=34.1
Q ss_pred hcceeEecCCCEE-EecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 335 RLKPSLCTEGTCV-VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 335 ~l~~~~~~~ge~I-i~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
..+...++||+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3556677888875 44444479999999999987764 33 3567888765
No 83
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=36.86 E-value=1.3e+02 Score=31.54 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 212 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 212 t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
.....+...+..+++.++.++++-.+..+.-+...-.++.+-..+++++-+|+..=+|+++.|+|+
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 183 QLPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334445555555555555555555555555444444455555666788888888888888877664
No 84
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=32.51 E-value=1.7e+02 Score=27.69 Aligned_cols=53 Identities=9% Similarity=-0.005 Sum_probs=33.4
Q ss_pred cceeEecCCCEE---------EecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCV---------VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~I---------i~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+-...+.||... .++.....++|+|++|.......+...+.. ...+.+|+.+=
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~--~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE--EEEECCCCEEE
Confidence 344556777743 334334569999999999877643321221 46789998763
No 85
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.89 E-value=1.8e+02 Score=27.76 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHh
Q 008665 225 AGLVLLALLIGNMQTYLTSLT---VRLEEMRIKRRDSEQWMHH 264 (558)
Q Consensus 225 ~G~~lfa~lig~~~~~l~~~~---~~~~~~~~k~~~~~~~m~~ 264 (558)
+++++.|.++|-..++++... .+.+++++.+++.++.++.
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777776654 3445556666666655543
No 86
>PRK06298 type III secretion system protein; Validated
Probab=31.26 E-value=1.9e+02 Score=30.38 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHH
Q 008665 225 AGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRY 278 (558)
Q Consensus 225 ~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y 278 (558)
+..++.++++-.+..+.-+...-.++.+-..+++++-+|+..=+++++.|+|+-
T Consensus 188 ~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~ 241 (356)
T PRK06298 188 VTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQI 241 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333333333333444443333334445555667888888888888888887653
No 87
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=31.18 E-value=81 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCCH-----hHHHHHHHHH
Q 008665 254 KRRDSEQWMHHRWLPQ-----DLRERVRRYD 279 (558)
Q Consensus 254 k~~~~~~~m~~~~lp~-----~L~~rV~~y~ 279 (558)
+..++.++++.+++|. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 3467889999999984 7888888774
No 88
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=30.68 E-value=2e+02 Score=20.47 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008665 218 FSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDS 258 (558)
Q Consensus 218 ~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~ 258 (558)
++.+..+..++....+...++++-.......+++|..-+++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666666666666666666655543
No 89
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=30.58 E-value=77 Score=25.25 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=29.2
Q ss_pred HHHHhcCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhccee
Q 008665 292 EHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPS 339 (558)
Q Consensus 292 ~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~ 339 (558)
.++|..||+.+|.+|...+ --+..++++.+..+...++.+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 5688899999988887776 445667888888877766543
No 90
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=29.37 E-value=7.2e+02 Score=26.46 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=15.3
Q ss_pred hHHHHHhhhh-hhHHHHHhhc
Q 008665 50 ALISRRYFRR-LFLVDFLSVL 69 (558)
Q Consensus 50 ~~Ia~~Ylk~-~F~iDlls~l 69 (558)
++..++|+++ |-++|++.++
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHH
Confidence 3445789998 8899988765
No 91
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.16 E-value=1.1e+02 Score=34.08 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 183 GQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 183 ~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
++-.-..-.++||+-..+..-|-|.-+|.+..-++..++++=+.+++-|-..+|++..+.
T Consensus 608 ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 608 EEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 333445667889887777777888889999888999998888888888888888887663
No 92
>PHA02909 hypothetical protein; Provisional
Probab=27.47 E-value=77 Score=23.36 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=27.2
Q ss_pred hccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008665 200 LSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 244 (558)
Q Consensus 200 lttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~ 244 (558)
|.+|.||.-.-....|..|+|.+ +.++|-.+.-.|-+++...
T Consensus 14 mlsvdygngkkvyytentfcimv---sfilfviiflsmftilacs 55 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMV---SFILFVIIFLSMFTILACS 55 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56788888777777787777654 3455555555566665543
No 93
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=27.39 E-value=1.9e+02 Score=26.30 Aligned_cols=52 Identities=29% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeC
Q 008665 353 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLR 425 (558)
Q Consensus 353 ~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~ 425 (558)
..+++.+|++|.+.+.. +|+ .....+||.+= + ++. ++.+..+-..++++...
T Consensus 94 ~YDEi~~VlEG~L~i~~--~G~-----~~~A~~GDvi~-------i-PkG------s~I~fst~~~a~~~Yv~ 145 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISI--DGQ-----TVTAKPGDVIF-------I-PKG------STITFSTPDYARFFYVT 145 (152)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETT-EEE-------E--TT-------EEEEEEEEEEEEEEEE
T ss_pred ecceEEEEEEeEEEEEE--CCE-----EEEEcCCcEEE-------E-CCC------CEEEEecCCCEEEEEEE
Confidence 35899999999998763 355 46788988762 2 332 66777777777776653
No 94
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=26.82 E-value=1.9e+02 Score=25.10 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=30.0
Q ss_pred ecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 341 CTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 341 ~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..||.+=..-++ ++.+-|++|.+++.. ++|+ ...+++||.|=
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~-d~Ge-----~v~~~aGD~~~ 93 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTP-DGGE-----PVEVRAGDSFV 93 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEEC-CCCe-----EEEEcCCCEEE
Confidence 456665555555 889999999997654 5555 56789998763
No 95
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=26.58 E-value=1.5e+02 Score=31.15 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=34.7
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecC-CceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~-g~e~~~~~~~l~~G~~fG 390 (558)
....+.||...----....++.++++|.+++...+. |+.. ...+.+||.+-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 345567777553322345689999999999887653 4432 24799999874
No 96
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=25.52 E-value=1.6e+02 Score=31.01 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=34.8
Q ss_pred cceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCee
Q 008665 336 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~f 389 (558)
+....+.||...-.-=.+ .+++++|++|.+++...+ +|+.. ...+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEE
Confidence 455667788766443333 679999999999987543 33322 3569999976
No 97
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.26 E-value=34 Score=30.19 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 008665 545 INLQKPSEPDFN 556 (558)
Q Consensus 545 ~~~~~~~~~~~~ 556 (558)
.+--||+||||+
T Consensus 60 lL~i~pPEPd~~ 71 (165)
T COG4016 60 LLDIKPPEPDFN 71 (165)
T ss_pred HhCCCCCCCCcc
Confidence 345789999997
No 98
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=25.08 E-value=2.2e+02 Score=32.15 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHH
Q 008665 212 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 277 (558)
Q Consensus 212 t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~ 277 (558)
.....+...+..++..+..++++-.+..+.-+...-.++.+-..+++++-+|+..=+++++.|+|+
T Consensus 437 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~ 502 (609)
T PRK12772 437 YIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQ 502 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444455555555555555555555555444444455666667888888888888888888774
No 99
>PRK11171 hypothetical protein; Provisional
Probab=23.08 E-value=1.8e+02 Score=29.10 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=38.0
Q ss_pred hcceeEecCCCEEEec-CCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 335 RLKPSLCTEGTCVVRE-GDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~e-Gd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
.+....++||..+-.. .....+.++|++|++.+.. +++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4666789999998774 6777799999999998754 344 46799999864
No 100
>PRK06771 hypothetical protein; Provisional
Probab=22.27 E-value=4.6e+02 Score=21.79 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 008665 215 EIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHH 264 (558)
Q Consensus 215 E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~ 264 (558)
|.+..|.+.++|.+ |+...+..+.+....+....+.+.+.+.+.+..
T Consensus 2 E~~ili~~~~~~~i---~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi 48 (93)
T PRK06771 2 EFWMIIPIAIFGFI---YIVEKLTKIEKKTDARLKRMEDRLQLITKEMGI 48 (93)
T ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444444443 334444555555555666666666555554433
No 101
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=21.83 E-value=3.6e+02 Score=23.83 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCCh
Q 008665 255 RRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPK 300 (558)
Q Consensus 255 ~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~ 300 (558)
...++.+-.++-+=+-|+..=.+++--.|.+++ -.|.+|+++.|.
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~-eeEaeiMKdVPg 106 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNL-EEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH-HHHHHHHccCCC
Confidence 344556666666666676665555555565433 235667777774
No 102
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=21.63 E-value=1.1e+02 Score=20.46 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 008665 457 TWAACFIQATWRRKSQRKKA 476 (558)
Q Consensus 457 ~~~~~~~q~~~~~~~~r~~~ 476 (558)
-+|+.+|+..|++.++|+..
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999988875
No 103
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.17 E-value=1.3e+02 Score=27.56 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 351 GDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 351 Gd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
-...+++.+|++|...+.. +++ ...+.|||+.|-
T Consensus 61 Hs~edEfv~ILeGE~~l~~-d~~------e~~lrpGD~~gF 94 (161)
T COG3837 61 HSAEDEFVYILEGEGTLRE-DGG------ETRLRPGDSAGF 94 (161)
T ss_pred cccCceEEEEEcCceEEEE-CCe------eEEecCCceeec
Confidence 3456899999999997655 444 357999999884
No 104
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.65 E-value=6.4e+02 Score=29.38 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhccccCCCcc-----cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKT-----STYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~-----p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
.=..+++|++-.++-++--++. ..+.++.+|.+--++.=+++.-.+|+.|.+-.|
T Consensus 553 eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQ 612 (822)
T KOG3609|consen 553 ESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQ 612 (822)
T ss_pred HHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHH
Confidence 3456889998766654433322 123334444444333334444444444444443
No 105
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.27 E-value=2.6e+02 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHH
Q 008665 220 ILIGIAGLVLLALLIGNMQTYLTSL-------------TVRLEEMRIKRRDSEQWMH 263 (558)
Q Consensus 220 i~i~i~G~~lfa~lig~~~~~l~~~-------------~~~~~~~~~k~~~~~~~m~ 263 (558)
+++.++|+.+||++++-+.+.-... ....++|+.+.+...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 5778899999999998764422111 2356788888888876655
Done!