Query 008665
Match_columns 558
No_of_seqs 430 out of 2945
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 4.7E-34 1.6E-38 297.2 14.9 302 9-446 41-344 (355)
2 3ukn_A Novel protein similar t 100.0 1.6E-33 5.6E-38 271.3 16.2 200 238-453 1-202 (212)
3 2ptm_A Hyperpolarization-activ 100.0 2.7E-32 9.3E-37 259.9 23.4 190 243-447 2-191 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 6.8E-32 2.3E-36 258.1 22.5 187 242-444 2-188 (202)
5 1orq_C Potassium channel; volt 99.9 5.5E-21 1.9E-25 185.5 16.0 184 4-243 36-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 2.5E-20 8.5E-25 170.0 16.0 142 291-447 5-148 (160)
7 3dn7_A Cyclic nucleotide bindi 99.8 1.9E-18 6.4E-23 163.0 15.3 151 311-489 5-157 (194)
8 3gyd_A CNMP-BD protein, cyclic 99.8 5.2E-18 1.8E-22 159.7 16.2 155 291-456 13-172 (187)
9 3ocp_A PRKG1 protein; serine/t 99.8 2E-18 6.7E-23 154.0 11.7 131 297-442 7-137 (139)
10 2r9r_B Paddle chimera voltage 99.8 1.7E-18 6E-23 187.3 11.9 249 5-312 237-490 (514)
11 3mdp_A Cyclic nucleotide-bindi 99.8 7.9E-18 2.7E-22 149.9 14.2 133 312-453 5-139 (142)
12 1wgp_A Probable cyclic nucleot 99.8 1.3E-18 4.5E-23 154.5 8.5 128 312-441 5-134 (137)
13 3idb_B CAMP-dependent protein 99.7 4E-18 1.4E-22 156.0 11.7 128 303-441 28-155 (161)
14 4ev0_A Transcription regulator 99.7 2.7E-17 9.4E-22 157.5 17.5 124 315-449 1-125 (216)
15 2pqq_A Putative transcriptiona 99.7 1.2E-17 4.1E-22 149.9 13.8 120 312-442 4-124 (149)
16 3dv8_A Transcriptional regulat 99.7 1.1E-16 3.6E-21 153.8 17.1 126 313-449 3-131 (220)
17 3fx3_A Cyclic nucleotide-bindi 99.7 6.3E-17 2.1E-21 157.5 14.6 128 311-449 9-137 (237)
18 3e97_A Transcriptional regulat 99.7 1.8E-16 6E-21 153.7 17.5 129 312-451 5-134 (231)
19 3d0s_A Transcriptional regulat 99.7 1E-16 3.5E-21 155.0 15.5 127 312-449 5-132 (227)
20 2z69_A DNR protein; beta barre 99.7 1.3E-16 4.5E-21 144.0 14.9 125 312-446 11-136 (154)
21 1vp6_A CNBD, cyclic-nucleotide 99.7 2.3E-16 7.7E-21 140.0 14.0 122 311-449 9-130 (138)
22 3iwz_A CAP-like, catabolite ac 99.7 9.8E-16 3.4E-20 148.1 18.7 128 312-449 10-143 (230)
23 1zyb_A Transcription regulator 99.7 2.5E-16 8.7E-21 153.0 14.1 125 311-445 16-143 (232)
24 2gau_A Transcriptional regulat 99.7 3.9E-16 1.3E-20 151.4 14.9 124 315-449 12-136 (232)
25 3pna_A CAMP-dependent protein 99.7 3.2E-16 1.1E-20 142.3 13.3 118 309-441 34-151 (154)
26 3dkw_A DNR protein; CRP-FNR, H 99.7 3.1E-16 1E-20 151.3 14.0 128 312-449 8-136 (227)
27 3shr_A CGMP-dependent protein 99.7 5.2E-16 1.8E-20 156.6 15.9 140 295-449 21-160 (299)
28 3ryp_A Catabolite gene activat 99.7 2.4E-15 8.1E-20 143.3 17.4 147 319-481 2-150 (210)
29 2fmy_A COOA, carbon monoxide o 99.6 1.5E-15 5.1E-20 146.1 14.1 120 312-449 3-122 (220)
30 4ava_A Lysine acetyltransferas 99.6 2E-15 6.7E-20 154.8 15.2 127 312-451 12-139 (333)
31 2oz6_A Virulence factor regula 99.6 8.9E-15 3E-19 138.9 18.5 115 324-449 1-120 (207)
32 2d93_A RAP guanine nucleotide 99.6 2E-16 7E-21 139.9 5.0 124 299-437 2-127 (134)
33 1ft9_A Carbon monoxide oxidati 99.6 2E-15 6.8E-20 145.5 11.9 118 314-449 1-118 (222)
34 3kcc_A Catabolite gene activat 99.6 1.2E-14 3.9E-19 144.0 17.4 117 322-449 55-173 (260)
35 3shr_A CGMP-dependent protein 99.6 2.4E-15 8.2E-20 151.7 11.5 127 309-446 153-281 (299)
36 1o5l_A Transcriptional regulat 99.6 8.8E-15 3E-19 140.2 12.9 118 318-446 4-123 (213)
37 2a9h_A Voltage-gated potassium 99.6 2.9E-15 9.9E-20 135.9 8.9 65 184-248 80-144 (155)
38 2qcs_B CAMP-dependent protein 99.6 1.7E-14 5.8E-19 144.7 15.3 128 307-449 33-160 (291)
39 2qcs_B CAMP-dependent protein 99.6 2.1E-14 7.3E-19 143.9 15.9 126 310-446 154-281 (291)
40 3of1_A CAMP-dependent protein 99.6 1E-14 3.5E-19 142.2 13.2 118 310-441 122-239 (246)
41 3tnp_B CAMP-dependent protein 99.6 1.4E-14 4.7E-19 153.4 15.0 129 303-442 135-263 (416)
42 3of1_A CAMP-dependent protein 99.6 7.6E-15 2.6E-19 143.0 11.4 123 311-448 5-127 (246)
43 4din_B CAMP-dependent protein 99.5 1.9E-14 6.7E-19 150.6 11.1 128 309-447 244-373 (381)
44 3vou_A ION transport 2 domain 99.5 5.6E-14 1.9E-18 127.0 12.4 87 188-274 52-148 (148)
45 4h33_A LMO2059 protein; bilaye 99.5 9.2E-15 3.1E-19 130.1 6.4 93 188-280 43-135 (137)
46 4din_B CAMP-dependent protein 99.5 4.1E-14 1.4E-18 148.1 12.3 130 305-449 122-251 (381)
47 3e6c_C CPRK, cyclic nucleotide 99.5 9.4E-14 3.2E-18 136.3 14.2 122 314-449 10-132 (250)
48 3tnp_B CAMP-dependent protein 99.5 2.6E-14 8.8E-19 151.3 10.6 121 310-441 264-391 (416)
49 3la7_A Global nitrogen regulat 99.5 4.1E-13 1.4E-17 131.2 16.7 115 326-449 30-148 (243)
50 2bgc_A PRFA; bacterial infecti 99.5 8.3E-13 2.8E-17 128.6 17.8 118 322-449 2-123 (238)
51 1o7f_A CAMP-dependent RAP1 gua 99.5 1.8E-13 6.3E-18 146.8 12.4 120 308-441 332-453 (469)
52 1o7f_A CAMP-dependent RAP1 gua 99.5 3.6E-13 1.2E-17 144.5 14.1 136 297-444 26-164 (469)
53 2ih3_C Voltage-gated potassium 99.4 2E-13 6.7E-18 119.0 9.4 62 185-246 58-119 (122)
54 3eff_K Voltage-gated potassium 99.4 1.4E-12 4.9E-17 116.4 11.0 91 186-277 38-129 (139)
55 3cf6_E RAP guanine nucleotide 99.4 2E-12 6.8E-17 144.9 11.9 133 292-439 12-146 (694)
56 4f7z_A RAP guanine nucleotide 99.3 4.3E-12 1.5E-16 148.7 14.6 134 294-440 24-160 (999)
57 3b02_A Transcriptional regulat 99.3 8E-12 2.7E-16 117.6 13.6 92 339-448 2-94 (195)
58 2zcw_A TTHA1359, transcription 99.3 2.1E-11 7.2E-16 115.3 11.7 98 332-448 1-101 (202)
59 4f7z_A RAP guanine nucleotide 99.2 4.1E-11 1.4E-15 140.4 13.9 115 309-437 333-449 (999)
60 2q67_A Potassium channel prote 99.2 9.5E-11 3.2E-15 100.6 10.4 61 188-248 49-109 (114)
61 3rvy_A ION transport protein; 99.2 9.7E-11 3.3E-15 117.4 12.1 63 184-246 176-244 (285)
62 2k1e_A Water soluble analogue 99.1 7E-12 2.4E-16 105.8 1.8 60 187-246 39-98 (103)
63 3ouf_A Potassium channel prote 99.1 2E-10 6.8E-15 95.7 8.2 56 188-243 32-87 (97)
64 3ldc_A Calcium-gated potassium 99.1 3.6E-10 1.2E-14 91.0 7.8 54 188-241 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 99.0 1.4E-11 4.8E-16 113.3 -1.7 65 186-250 65-129 (166)
66 1xl4_A Inward rectifier potass 98.9 4.9E-09 1.7E-13 105.2 9.3 57 186-242 80-136 (301)
67 3um7_A Potassium channel subfa 98.8 8.2E-09 2.8E-13 103.3 10.5 56 188-243 115-170 (309)
68 1p7b_A Integral membrane chann 98.8 4.1E-09 1.4E-13 106.9 7.6 57 188-244 96-152 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.7 2.3E-08 7.7E-13 101.1 9.9 57 188-244 78-134 (321)
70 3ukm_A Potassium channel subfa 98.5 1.9E-07 6.5E-12 92.0 8.1 55 188-242 93-147 (280)
71 3um7_A Potassium channel subfa 98.5 7.6E-08 2.6E-12 96.3 4.2 59 188-246 224-288 (309)
72 4gx0_A TRKA domain protein; me 98.4 3.7E-07 1.3E-11 100.1 9.3 55 188-242 51-106 (565)
73 3sya_A G protein-activated inw 98.4 6.3E-07 2.2E-11 90.7 9.4 59 187-245 90-150 (340)
74 3ukm_A Potassium channel subfa 98.4 2E-07 6.8E-12 91.9 5.6 58 188-245 201-265 (280)
75 4dxw_A Navrh, ION transport pr 98.2 1.1E-05 3.8E-10 77.7 13.5 59 185-243 162-225 (229)
76 1lnq_A MTHK channels, potassiu 98.2 8.3E-08 2.8E-12 98.2 -2.1 56 189-244 46-101 (336)
77 3spc_A Inward-rectifier K+ cha 98.1 6.3E-06 2.2E-10 83.5 9.6 58 186-243 92-151 (343)
78 2kyh_A KVAP, voltage-gated pot 97.3 0.00066 2.3E-08 60.4 8.2 49 6-74 51-99 (147)
79 1ors_C Potassium channel; volt 96.9 0.002 6.8E-08 56.2 7.1 50 5-74 35-84 (132)
80 3fjs_A Uncharacterized protein 77.5 10 0.00034 31.2 8.4 68 336-424 38-105 (114)
81 3rns_A Cupin 2 conserved barre 76.4 9.8 0.00033 35.6 9.0 68 336-424 39-106 (227)
82 2ozj_A Cupin 2, conserved barr 73.4 13 0.00044 30.1 8.0 64 340-424 44-107 (114)
83 3kg2_A Glutamate receptor 2; I 73.1 3.7 0.00013 46.1 6.0 56 187-243 562-617 (823)
84 1yhf_A Hypothetical protein SP 68.9 24 0.00081 28.4 8.7 68 336-424 42-109 (115)
85 2pfw_A Cupin 2, conserved barr 67.6 31 0.001 27.7 9.1 68 336-424 36-103 (116)
86 3lwc_A Uncharacterized protein 66.8 39 0.0013 27.9 9.6 45 338-390 44-88 (119)
87 2kxw_B Sodium channel protein 66.5 4.9 0.00017 24.3 2.7 19 456-474 5-23 (27)
88 2l53_B CAM, voltage-gated sodi 66.1 5 0.00017 25.1 2.8 21 455-475 4-24 (31)
89 4e2g_A Cupin 2 conserved barre 58.2 35 0.0012 27.9 7.9 76 336-432 43-122 (126)
90 1zvf_A 3-hydroxyanthranilate 3 56.9 76 0.0026 28.3 9.9 86 327-428 12-115 (176)
91 1yfu_A 3-hydroxyanthranilate-3 52.8 16 0.00055 32.6 4.9 58 353-427 54-112 (174)
92 2gu9_A Tetracenomycin polyketi 47.4 27 0.00091 27.7 5.2 48 336-390 23-73 (113)
93 3d82_A Cupin 2, conserved barr 47.2 42 0.0014 25.9 6.3 50 355-425 51-100 (102)
94 3rns_A Cupin 2 conserved barre 47.0 58 0.002 30.1 8.2 68 336-424 155-223 (227)
95 1v70_A Probable antibiotics sy 46.8 32 0.0011 26.6 5.5 47 337-390 31-78 (105)
96 4axo_A EUTQ, ethanolamine util 46.7 48 0.0016 28.9 6.9 52 353-425 83-134 (151)
97 3d0j_A Uncharacterized protein 46.6 33 0.0011 29.5 5.6 61 350-427 46-110 (140)
98 2bnm_A Epoxidase; oxidoreducta 46.1 59 0.002 29.0 7.9 49 339-390 122-173 (198)
99 1o5u_A Novel thermotoga mariti 45.8 1.1E+02 0.0038 24.2 10.0 46 337-390 34-79 (101)
100 3h8u_A Uncharacterized conserv 44.5 30 0.001 28.3 5.2 49 336-390 41-90 (125)
101 1dgw_A Canavalin; duplicated s 41.9 29 0.00099 30.9 5.0 52 336-390 43-94 (178)
102 3bcw_A Uncharacterized protein 41.8 55 0.0019 27.3 6.4 44 340-390 55-98 (123)
103 3es4_A Uncharacterized protein 39.7 30 0.001 28.8 4.3 44 340-390 48-91 (116)
104 2q1z_B Anti-sigma factor CHRR, 39.4 49 0.0017 30.0 6.2 65 335-424 126-192 (195)
105 2qnk_A 3-hydroxyanthranilate 3 39.3 53 0.0018 31.7 6.4 59 352-427 49-107 (286)
106 2o1q_A Putative acetyl/propion 39.2 40 0.0014 28.9 5.3 50 336-390 46-95 (145)
107 2q30_A Uncharacterized protein 37.7 1.3E+02 0.0044 23.3 8.0 68 337-424 36-105 (110)
108 1fi2_A Oxalate oxidase, germin 36.9 65 0.0022 29.1 6.6 53 336-390 74-130 (201)
109 3ibm_A Cupin 2, conserved barr 36.7 39 0.0013 29.7 4.9 48 336-390 58-105 (167)
110 2i45_A Hypothetical protein; n 34.6 43 0.0015 26.4 4.5 67 342-428 36-102 (107)
111 2fqp_A Hypothetical protein BP 34.4 21 0.00072 28.0 2.5 49 337-390 21-70 (97)
112 4b29_A Dimethylsulfoniopropion 32.9 62 0.0021 30.0 5.6 45 340-390 138-182 (217)
113 2pyt_A Ethanolamine utilizatio 32.8 1.1E+02 0.0038 25.6 7.0 44 338-390 61-104 (133)
114 2b8m_A Hypothetical protein MJ 32.7 42 0.0014 27.0 4.2 45 339-390 32-77 (117)
115 1sfn_A Conserved hypothetical 31.8 1.7E+02 0.0058 27.2 8.9 65 338-425 54-118 (246)
116 3kgz_A Cupin 2 conserved barre 31.1 37 0.0012 29.6 3.7 45 339-390 49-93 (156)
117 2f4p_A Hypothetical protein TM 31.1 69 0.0024 27.2 5.5 48 337-390 51-98 (147)
118 1vj2_A Novel manganese-contain 30.7 48 0.0016 27.3 4.3 46 338-390 52-97 (126)
119 3jzv_A Uncharacterized protein 30.6 35 0.0012 30.1 3.5 46 338-390 57-102 (166)
120 1o4t_A Putative oxalate decarb 30.5 52 0.0018 27.4 4.5 47 337-390 60-107 (133)
121 1lr5_A Auxin binding protein 1 29.9 47 0.0016 28.7 4.3 51 337-390 44-99 (163)
122 3es1_A Cupin 2, conserved barr 28.8 48 0.0016 29.6 4.0 48 336-389 81-128 (172)
123 2opk_A Hypothetical protein; p 28.8 51 0.0017 26.6 4.0 34 352-390 51-84 (112)
124 2vqa_A SLL1358 protein, MNCA; 28.2 85 0.0029 31.0 6.4 51 337-390 55-107 (361)
125 3h7j_A Bacilysin biosynthesis 27.9 82 0.0028 29.3 5.8 47 336-389 36-82 (243)
126 1y9q_A Transcriptional regulat 27.8 80 0.0027 28.0 5.6 45 339-390 109-155 (192)
127 4i4a_A Similar to unknown prot 27.7 2.4E+02 0.008 22.6 9.2 79 338-437 38-120 (128)
128 1j58_A YVRK protein; cupin, de 27.1 85 0.0029 31.4 6.2 52 336-390 81-133 (385)
129 1uij_A Beta subunit of beta co 26.9 57 0.0019 33.5 4.8 54 334-390 49-102 (416)
130 3bu7_A Gentisate 1,2-dioxygena 25.7 43 0.0015 34.1 3.5 48 337-390 126-173 (394)
131 2vqa_A SLL1358 protein, MNCA; 25.7 1.1E+02 0.0037 30.2 6.6 52 336-390 236-289 (361)
132 3i7d_A Sugar phosphate isomera 25.6 53 0.0018 28.6 3.8 47 337-390 46-94 (163)
133 2ea7_A 7S globulin-1; beta bar 24.9 67 0.0023 33.1 4.9 54 334-390 61-114 (434)
134 1sfn_A Conserved hypothetical 24.5 74 0.0025 29.8 4.8 50 334-390 165-215 (246)
135 2oa2_A BH2720 protein; 1017534 23.9 1E+02 0.0035 26.1 5.2 50 338-389 47-98 (148)
136 3h7j_A Bacilysin biosynthesis 23.6 1.7E+02 0.006 27.0 7.3 46 338-390 149-195 (243)
137 3ht1_A REMF protein; cupin fol 22.7 59 0.002 27.1 3.4 46 340-390 45-90 (145)
138 2cav_A Protein (canavalin); vi 22.4 80 0.0027 32.7 4.9 53 335-390 87-139 (445)
139 1j58_A YVRK protein; cupin, de 22.4 1.2E+02 0.004 30.4 6.1 52 336-390 259-312 (385)
140 4e2q_A Ureidoglycine aminohydr 22.2 1.6E+02 0.0053 28.2 6.6 70 337-426 73-142 (266)
141 2vpv_A Protein MIF2, MIF2P; nu 21.9 58 0.002 28.8 3.2 32 352-390 108-139 (166)
142 1sq4_A GLXB, glyoxylate-induce 21.7 91 0.0031 29.9 4.9 50 334-390 191-241 (278)
143 3dvk_B Voltage-dependent R-typ 21.7 69 0.0024 18.5 2.3 18 457-474 6-23 (23)
144 1sef_A Conserved hypothetical 21.5 89 0.003 29.7 4.8 48 336-390 184-232 (274)
145 3cew_A Uncharacterized cupin p 21.2 83 0.0028 25.5 4.0 46 338-390 30-77 (125)
146 2d5f_A Glycinin A3B4 subunit; 21.1 1.7E+02 0.0057 30.7 7.0 60 329-390 362-423 (493)
147 3nw4_A Gentisate 1,2-dioxygena 20.8 67 0.0023 32.4 3.7 49 335-389 104-152 (368)
148 3l2h_A Putative sugar phosphat 20.6 76 0.0026 27.2 3.7 46 337-389 49-96 (162)
149 3ebr_A Uncharacterized RMLC-li 20.5 1.5E+02 0.005 25.8 5.6 67 335-424 43-113 (159)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=4.7e-34 Score=297.21 Aligned_cols=302 Identities=19% Similarity=0.251 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhh-cCHHHHHHHHhccCCcch
Q 008665 9 ITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSV-LPIPQLLVSVYLSDTRAK 86 (558)
Q Consensus 9 ~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~-lPl~~i~~~~~~~~~~~~ 86 (558)
+.+++.++-++|.+|+++++..+ +. ..+|.++ |.++|++++ +|+..+. .+ +..
T Consensus 41 ~~~~~~~~~~~f~~e~~~r~~~~---~~----------------~~~~~~~~~~i~Dl~~i~~p~~~~~----~~--~~~ 95 (355)
T 3beh_A 41 LAALLAVIWGAYLLQLAATLLKR---RA----------------GVVRDRTPKIAIDVLAVLVPLAAFL----LD--GSP 95 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC---CS----------------CSSCCCHHHHHHHHHHHHHHHHHHH----SC--CSG
T ss_pred HHHHHhHHHHHHHHHHHHhcccc---cc----------------cceeccCcchHHHHHHHHHHHHHHH----hc--cch
Confidence 33445555556889999888432 11 0235555 899999999 6885432 12 122
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCCcch
Q 008665 87 VFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHQTREHIIDHKCHAMEGNPEFNFG 166 (558)
Q Consensus 87 ~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~~~~~~~~~~g 166 (558)
.++..|++|++ |+.|..+..+.+.+... . ........+++++++.|+.||.++.....
T Consensus 96 ~~r~lr~~R~l-------rl~r~~~~~~~l~~~l~---~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~~----------- 153 (355)
T 3beh_A 96 DWSLYCAVWLL-------KPLRDSTFFPVLGRVLA---N-EARNLIGVTTLFGVVLFAVALAAYVIERD----------- 153 (355)
T ss_dssp GGGGGGGGGGS-------HHHHTCSSHHHHHHHHH---H-THHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------
Confidence 23333333322 33333222222222110 0 01111222334456678888888744211
Q ss_pred hhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008665 167 IYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTV 246 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~ 246 (558)
.+.+.+..|..|+||+++||||+||||++|.|..|++++++++++|++++++++|.+.+.+++...
T Consensus 154 --------------~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 154 --------------IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp --------------TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 023335679999999999999999999999999999999999999999999999999887753211
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhccCcccccccH
Q 008665 247 RLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDE 326 (558)
Q Consensus 247 ~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~ 326 (558)
+ +++. .+.+.++++|+|+++++
T Consensus 220 ~----------------------------~~~~------------------------------~~~~~l~~~~lf~~ls~ 241 (355)
T 3beh_A 220 R----------------------------GDFV------------------------------RNWQLVAAVPLFQKLGP 241 (355)
T ss_dssp H----------------------------HHHH------------------------------HHHC-------------
T ss_pred H----------------------------Hhhc------------------------------ccchhhhcccccccCCH
Confidence 0 0000 02467888999999999
Q ss_pred HHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCC
Q 008665 327 RLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNL 406 (558)
Q Consensus 327 ~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l 406 (558)
+.++.++..++++.|+|||.|+++||+++++|||.+|.++++..+ + ..+++|++|||.++ +.+.|
T Consensus 242 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~---l~~~~---- 306 (355)
T 3beh_A 242 AVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMAL---ISGEP---- 306 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHH---hCCCC----
Confidence 999999999999999999999999999999999999999988754 1 47999999999988 66666
Q ss_pred CCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 407 PLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 407 ~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
+..+++|.++|+++.+++++|.++++++|++..+..+.
T Consensus 307 --~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~ 344 (355)
T 3beh_A 307 --RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKT 344 (355)
T ss_dssp ----------------------------------------
T ss_pred --cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 78999999999999999999999999999877654443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=1.6e-33 Score=271.30 Aligned_cols=200 Identities=22% Similarity=0.397 Sum_probs=174.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhcc
Q 008665 238 QTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRR 317 (558)
Q Consensus 238 ~~~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~ 317 (558)
++++++++.+.++|+++++.+++||+++++|++|+.||++||+|.|..+++.+++++++.||++||.+|..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred CcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhh
Q 008665 318 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWA 397 (558)
Q Consensus 318 v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~ 397 (558)
+|+|.++++++++.++..++++.|.||++|+++||+++++|||.+|.|+++. +| .+ +..+++|++|||.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~--- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSL--- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCC---
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHh---
Confidence 9999999999999999999999999999999999999999999999999986 23 22 789999999999987
Q ss_pred cCCC--CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 008665 398 LDPK--SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSH 453 (558)
Q Consensus 398 l~~~--~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~ 453 (558)
+.+. | ++.+++|+++|+++.|++++|..+++++|++..+.++.+.+..+.
T Consensus 151 ~~~~~~~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 151 TKEQVIK------TNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp SSSSCCB------BCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred ccCCCCC------cceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 5554 4 889999999999999999999999999998887666666554443
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=2.7e-32 Score=259.93 Aligned_cols=190 Identities=22% Similarity=0.417 Sum_probs=174.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhccCcccc
Q 008665 243 SLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFA 322 (558)
Q Consensus 243 ~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~ 322 (558)
+++.+..+|+++++.+++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567888999999999999999999999999999999999998 5789999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCC
Q 008665 323 NMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKS 402 (558)
Q Consensus 323 ~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~ 402 (558)
+++++++..++..++++.|.||++|+++||+++.+|||.+|.|+++. .+|+ + +..+++|++||+.++ +.+.|
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~---~~~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICL---LTRER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHH---HHSSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHH---cCCCc
Confidence 99999999999999999999999999999999999999999999987 4454 3 789999999999988 55555
Q ss_pred CCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 008665 403 VTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHT 447 (558)
Q Consensus 403 ~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~ 447 (558)
++.+++|+++|+++.|++++|..+++++|++....++.+
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 889999999999999999999999999998776555443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=6.8e-32 Score=258.10 Aligned_cols=187 Identities=26% Similarity=0.437 Sum_probs=170.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhHhhhccCccc
Q 008665 242 TSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLF 321 (558)
Q Consensus 242 ~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F 321 (558)
++++.+..+|+++++.+++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5678899999999999999999999999999999999999998 588999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCC
Q 008665 322 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPK 401 (558)
Q Consensus 322 ~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~ 401 (558)
.++++++++.++..++++.|.||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++||+.++ +.+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~---~~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICL---LTRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHH---HHCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHH---hcCC
Confidence 999999999999999999999999999999999999999999999975 45553 36899999999988 5555
Q ss_pred CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHH
Q 008665 402 SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQV 444 (558)
Q Consensus 402 ~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l 444 (558)
| ++.+++|+++|+++.|++++|..+++++|++.....
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 188 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 188 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 5 789999999999999999999999999997665433
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.85 E-value=5.5e-21 Score=185.52 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=122.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhhhhHHHHHhhcCHHHHHHHHhccCC
Q 008665 4 QLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDT 83 (558)
Q Consensus 4 ~~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~F~iDlls~lPl~~i~~~~~~~~~ 83 (558)
.....+..+|.+++++|.+|++++|.++. + .++|+|+ +++|+++++|+...... ..
T Consensus 36 ~~~~~l~~~d~~~~~iF~~e~~lr~~~~~---~----------------~~~y~~~-~iiDllailP~~~~~~~-~~--- 91 (223)
T 1orq_C 36 EYLVRLYLVDLILVIILWADYAYRAYKSG---D----------------PAGYVKK-TLYEIPALVPAGLLALI-EG--- 91 (223)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHTTS---C----------------HHHHHHH-HHHHCTTHHHHHHHHHH-HH---
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcccc---c----------------HHHHHHH-hHHHHHHHHHHHHHHHH-hc---
Confidence 34567889999999999999999999852 1 3799998 99999999999765421 00
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hHHHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCC
Q 008665 84 RAKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVES-ALGGAAYYLLCYIVCSHQTREHIIDHKCHAMEGNPE 162 (558)
Q Consensus 84 ~~~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~~i~~~~~~~~~~-~~~~~~~~ll~~~l~~H~~~c~w~~~~c~~~~~~~~ 162 (558)
+.+ ..+.+|++|++ |++|+.++.+...+....+... ........++..++..|+.+|.++.....
T Consensus 92 ~~~---~~~~lr~lRll----RllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~------- 157 (223)
T 1orq_C 92 HLA---GLGLFRLVRLL----RFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYP------- 157 (223)
T ss_dssp HHH---TTTCHHHHHHH----HHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-------
T ss_pred chh---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 110 11233333322 3333333332111111111110 00111222233445678888887643210
Q ss_pred CcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 163 FNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
..++....|..|+||+++|+||+||||++|.|..|++++++++++|++++|+++|.+++.++
T Consensus 158 ------------------~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 158 ------------------DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp ------------------STTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223357999999999999999999999999999999999999999999999999999887
Q ss_pred h
Q 008665 243 S 243 (558)
Q Consensus 243 ~ 243 (558)
+
T Consensus 220 ~ 220 (223)
T 1orq_C 220 K 220 (223)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=2.5e-20 Score=169.95 Aligned_cols=142 Identities=23% Similarity=0.399 Sum_probs=120.1
Q ss_pred hHHHHhcCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe
Q 008665 291 EEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT 370 (558)
Q Consensus 291 e~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~ 370 (558)
.+++++.||++||.++..+++.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35599999999999999999999999999999999999999999999999999999999999999999999999999772
Q ss_pred cCCceeeeeeeecCCCCeechhhhhhhcCC--CCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 008665 371 DGGRTGFYNRGMLKEGDFCGEELLTWALDP--KSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHT 447 (558)
Q Consensus 371 ~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~--~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~ 447 (558)
+ .+ +..+.+|++||+.++ +.+ .+ +..+++|.++|+++.|++++|..+++++|++....++..
T Consensus 85 --~--~~--~~~~~~G~~fG~~~~---~~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D--EV--VAILGKGDVFGDVFW---KEATLAQ------SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T--EE--EEEEETTCEEECCTT---TCSSCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C--EE--EEEecCCCEeCcHHH---hcCcccc------eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23 789999999999977 554 34 889999999999999999999999999998777555543
No 7
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.78 E-value=1.9e-18 Score=163.01 Aligned_cols=151 Identities=10% Similarity=0.150 Sum_probs=123.1
Q ss_pred hHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCee
Q 008665 311 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 311 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~f 389 (558)
...+++++|.|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356778889999999999999999999999999999999999999999999999999875 5688877 8999999999
Q ss_pred chh-hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008665 390 GEE-LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWR 468 (558)
Q Consensus 390 Ge~-sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~ 468 (558)
||. ++ +++.| +..+++|+++|+++.|++++|..++.++|++.. +....+....+
T Consensus 83 ge~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~----------------~~~~~~~~~l~ 137 (194)
T 3dn7_A 83 SDYMAF---QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALER----------------YFRLVYQKSFA 137 (194)
T ss_dssp CCHHHH---HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHH----------------HHHHHHHHHHH
T ss_pred eehHHH---hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHH----------------HHHHHHHHHHH
Confidence 988 77 56665 789999999999999999999999999996554 33344445556
Q ss_pred HhhhhhhhHHHhhhhhccccc
Q 008665 469 RKSQRKKATEQRLKEEGERID 489 (558)
Q Consensus 469 ~~~~r~~~~~~~~~~~ery~~ 489 (558)
...+|... ....++++||..
T Consensus 138 ~~~~~~~~-l~~~~~~~Rl~~ 157 (194)
T 3dn7_A 138 AAQLRSKF-QHMYSKEEQYHN 157 (194)
T ss_dssp HHHHHHHH-HHHC--------
T ss_pred HHHHHHHH-HhcCCHHHHHHH
Confidence 66667777 788888888854
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.77 E-value=5.2e-18 Score=159.67 Aligned_cols=155 Identities=17% Similarity=0.267 Sum_probs=130.3
Q ss_pred hHHHHhcCChhH----HHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEE
Q 008665 291 EEHLVQNLPKDL----RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLE 366 (558)
Q Consensus 291 e~~il~~LP~~L----r~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~ 366 (558)
+....+.++|+| +.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445555666553 3344455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHH
Q 008665 367 SVTTD-GGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQ 445 (558)
Q Consensus 367 ~~~~~-~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~ 445 (558)
++..+ +|++.+ +..+.+|++||+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++..+.++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~---l~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSM---IDGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHH---HHCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHH---hCCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 88654 677777 899999999999987 55565 7899999999999999999999999999998887776
Q ss_pred HHHHhhhhhhH
Q 008665 446 HTFRFYSHQWR 456 (558)
Q Consensus 446 ~~~r~~s~~~~ 456 (558)
...+..+++.+
T Consensus 162 ~l~~~l~~rl~ 172 (187)
T 3gyd_A 162 RLLQLLTARFR 172 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555444433
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.76 E-value=2e-18 Score=153.96 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=115.0
Q ss_pred cCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCcee
Q 008665 297 NLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTG 376 (558)
Q Consensus 297 ~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~ 376 (558)
++|..+|.+...+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999854 343
Q ss_pred eeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHH
Q 008665 377 FYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSR 442 (558)
Q Consensus 377 ~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k 442 (558)
+ +..+.+|++||+.++ +.+.+ +..+++|+++|+++.|++++|..+++++|.++++
T Consensus 83 ~--~~~~~~G~~fGe~~~---l~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAI---LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHH---HHCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHH---HCCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 2 789999999999987 55555 7899999999999999999999999999976653
No 10
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.76 E-value=1.7e-18 Score=187.32 Aligned_cols=249 Identities=14% Similarity=0.170 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhh-hhHHHHHhhcCHHHHHHHHhccCC
Q 008665 5 LAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDT 83 (558)
Q Consensus 5 ~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~-~F~iDlls~lPl~~i~~~~~~~~~ 83 (558)
....+.+++.++.++|.+|++++|.++- . .++|+++ |.++|+++++|+...+........
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~ 297 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKS 297 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhcccc
Confidence 4557889999999999999999998741 1 1479999 899999999999654432111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHhHHHHHHHHH-HHHHHhhhhhhhhhhccCcccCC
Q 008665 84 RAKVFSTKEALPLLIILQYVPRILRIFPLIS---ELKKTVGVFVESALGGAAYYLL-CYIVCSHQTREHIIDHKCHAMEG 159 (558)
Q Consensus 84 ~~~~~~~~~~lr~i~~~q~l~Rl~ri~~l~~---~i~~~~~~~~~~~~~~~~~~ll-~~~l~~H~~~c~w~~~~c~~~~~ 159 (558)
+.........+|++|++ |++|++++.+ .++.....+... ...+..++ +.++..+++|+.++.... .
T Consensus 298 ~~~~~~~~~~lrvlRll----RvlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~~l~i~~~if~~~~~~~e~----~ 367 (514)
T 2r9r_B 298 VLQFQNVRRVVQIFRIM----RILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIFFLFIGVILFSSAVYFAEA----D 367 (514)
T ss_dssp HHHHHTTHHHHHHHHHH----GGGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred chhhhhHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhheeec----c
Confidence 11001112233333322 3333333322 222211111111 11112222 223445666665542210 0
Q ss_pred CCCCcchhhHHhhhhhhccCCCCcchHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 160 NPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQT 239 (558)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~ 239 (558)
...+.+..|..|+||+++||||+||||+.|.+..+++++++++++|++++++++|.+.+
T Consensus 368 ---------------------~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~ 426 (514)
T 2r9r_B 368 ---------------------ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426 (514)
T ss_dssp ---------------------CTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ---------------------CCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHH
Confidence 02334456889999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhhcCCChHHHHhcCChhHHHHHHHHHhH
Q 008665 240 YLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCL 312 (558)
Q Consensus 240 ~l~~~~~~~~~~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~ 312 (558)
.++....+..+ ++..+..++++.-...|.....+ + .+.+...++.-..+|...++.++...-+.
T Consensus 427 ~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 427 NFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSASTISKSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp HHHHHHHHHC---------------------------------------------------------------
T ss_pred HHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCCCccccccccccccccccccccccc
Confidence 88766553322 11112223343333333322211 0 11223344555567777777776654433
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.75 E-value=7.9e-18 Score=149.94 Aligned_cols=133 Identities=16% Similarity=0.235 Sum_probs=112.6
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceee-eeeeecCCCCee
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGF-YNRGMLKEGDFC 389 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~-~~~~~l~~G~~f 389 (558)
.+.++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ ..+..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 467899999999999999999999999999999999999999999999999999998643 343321 115789999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 008665 390 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSH 453 (558)
Q Consensus 390 Ge~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~ 453 (558)
|+.++ +.+.| +..+++|+++|+++.|++++|..++.++|.+..+.++...+..++
T Consensus 85 G~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99888 66665 889999999999999999999999999999888777766665443
No 12
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.75 E-value=1.3e-18 Score=154.45 Aligned_cols=128 Identities=77% Similarity=1.157 Sum_probs=110.9
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeee--ecCCCCee
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRG--MLKEGDFC 389 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~--~l~~G~~f 389 (558)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.+ +. .+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~l~~G~~f 82 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF--YNRSLLKEGDFC 82 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSS--SCEEECCTTCBS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCccee--eeeeeecCCCEe
Confidence 357899999999999999999999999999999999999999999999999999976566777766 55 99999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 390 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 390 Ge~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
|+.++++.+++.|.++.|.++.+++|+++|+++.|++++|.++++++|++++
T Consensus 83 Ge~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 83 GDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp STHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred cHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9997533366665333335789999999999999999999999999997654
No 13
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.75 E-value=4e-18 Score=155.96 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=116.3
Q ss_pred HHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeee
Q 008665 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGM 382 (558)
Q Consensus 303 r~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~ 382 (558)
|.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 344455566889999999999999999999999999999999999999999999999999999999877788877 899
Q ss_pred cCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 383 LKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 383 l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
+.+|++||+.++ +.+.| +..+++|+++|+++.|++++|..+++++|.++.
T Consensus 106 ~~~G~~fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 106 YDNRGSFGELAL---MYNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EESCCEECGGGG---TCCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred cCCCCEechHHH---HcCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999988 66666 889999999999999999999999999997654
No 14
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.75 E-value=2.7e-17 Score=157.47 Aligned_cols=124 Identities=20% Similarity=0.309 Sum_probs=109.9
Q ss_pred hccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhh
Q 008665 315 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEEL 393 (558)
Q Consensus 315 l~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~s 393 (558)
++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999875 5677777 89999999999998
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 394 LTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 394 l~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+ +.+.| +..+++|+++|+++.+++++|..++.++|++....++...+
T Consensus 79 ~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 125 (216)
T 4ev0_A 79 L---LDEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR 125 (216)
T ss_dssp H---HHCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred h---cCCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 7 55665 78999999999999999999999999999887766555544
No 15
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.74 E-value=1.2e-17 Score=149.88 Aligned_cols=120 Identities=24% Similarity=0.375 Sum_probs=109.7
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 568999999999999999999999999999999999999999999999999999988654 577776 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSR 442 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k 442 (558)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|.+...
T Consensus 82 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~ 124 (149)
T 2pqq_A 82 ELSL---FDPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATA 124 (149)
T ss_dssp GGGG---TSCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHH
T ss_pred hHHh---cCCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHH
Confidence 9987 66655 8899999999999999999999999999976553
No 16
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.72 E-value=1.1e-16 Score=153.83 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=112.1
Q ss_pred hhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCe--e
Q 008665 313 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDF--C 389 (558)
Q Consensus 313 ~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~--f 389 (558)
++++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5789999999999999999999999999999999999999999999999999999864 4678877 899999999 6
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 390 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 390 Ge~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
|+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 88888 67766 88999999999999999999999999999887765554444
No 17
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.71 E-value=6.3e-17 Score=157.48 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=114.5
Q ss_pred hHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCee
Q 008665 311 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 311 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~f 389 (558)
..++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+.+|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 467899999999999999999999999999999999999999999999999999999875 5678877 8999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 390 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 390 Ge~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
|+.++ +.+.| +..+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 87 G~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 87 GEAVA---LRNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp CHHHH---HHTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHH---hcCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99987 45555 78999999999999999999999999999877755554443
No 18
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.71 E-value=1.8e-16 Score=153.68 Aligned_cols=129 Identities=21% Similarity=0.294 Sum_probs=115.4
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
.++++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998754 678877 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 451 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~ 451 (558)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|.+....++.+.+..
T Consensus 83 ~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 134 (231)
T 3e97_A 83 ETAV---LAHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV 134 (231)
T ss_dssp TTTT---TCCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eHHH---hCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9987 66665 8899999999999999999999999999998887776665533
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.71 E-value=1e-16 Score=154.96 Aligned_cols=127 Identities=21% Similarity=0.379 Sum_probs=114.8
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
.++++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 457899999999999999999999999999999999999999999999999999998754 678777 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|.+....++.+.+
T Consensus 83 ~~~~---~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 83 ELSI---FDPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp CHHH---HSCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred eHHH---cCCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9987 66665 88999999999999999999999999999988766665544
No 20
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.71 E-value=1.3e-16 Score=144.00 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=107.3
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 467899999999999999999999999999999999999999999999999999998654 577766 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
+.++ +.+.+ .+..+++|+++|+++.|++++|..++.++|++....++.
T Consensus 89 ~~~~---~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~ 136 (154)
T 2z69_A 89 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAK 136 (154)
T ss_dssp GGGG---GSSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHhh---ccCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHH
Confidence 9987 44442 378999999999999999999999999999876644443
No 21
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.69 E-value=2.3e-16 Score=139.97 Aligned_cols=122 Identities=25% Similarity=0.401 Sum_probs=107.8
Q ss_pred hHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 311 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 311 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ + ..+.+|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999987654 1 3689999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++....++.+.+
T Consensus 81 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHH---HHCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHh---ccCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9987 55555 78999999999999999999999999999877655554443
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.68 E-value=9.8e-16 Score=148.06 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=101.8
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fG 390 (558)
...+++.++|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 45788899999999999999999999999999999999999999999999999999864 4678877 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHh-----HHHHHHHHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQF-----RRLHSRQVQHTFR 449 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~-----p~l~~k~l~~~~r 449 (558)
+.++ +.+.+ ++..+++|+++|+++.|++++|..++.++ |++....++...+
T Consensus 88 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 88 EMGL---FIESD-----TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp CGGG---TSCCS-----BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred ehhh---hcCCC-----CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 9977 44431 27899999999999999999999999999 8776655554443
No 23
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=2.5e-16 Score=153.02 Aligned_cols=125 Identities=12% Similarity=0.209 Sum_probs=111.0
Q ss_pred hHhhhccCcccccccHHHHHHHHhh--cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCC
Q 008665 311 CLNLVRRVPLFANMDERLLDAICER--LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGD 387 (558)
Q Consensus 311 ~~~ll~~v~~F~~l~~~~l~~l~~~--l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~ 387 (558)
....++++|+|.+++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4677899999999999999999998 99999999999999999999999999999999864 4677777 89999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHH
Q 008665 388 FCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQ 445 (558)
Q Consensus 388 ~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~ 445 (558)
+||+.++ +.+.+ .+..+++|+++|+++.|++++|..++.++|++....++
T Consensus 94 ~fG~~~~---~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 143 (232)
T 1zyb_A 94 LIEPQSL---FGMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMN 143 (232)
T ss_dssp EECGGGG---SSSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHH
T ss_pred eeeehHH---hCCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHH
Confidence 9999987 55442 37899999999999999999999999999987664444
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=3.9e-16 Score=151.36 Aligned_cols=124 Identities=14% Similarity=0.263 Sum_probs=108.3
Q ss_pred hccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechhh
Q 008665 315 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEEL 393 (558)
Q Consensus 315 l~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~s 393 (558)
...+|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|++||+.+
T Consensus 12 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~ 89 (232)
T 2gau_A 12 HLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRP 89 (232)
T ss_dssp GGSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHH
T ss_pred ccccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeeh
Confidence 346799999999999999999999999999999999999999999999999998653 577776 89999999999998
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 394 LTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 394 l~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+ +.+.| +..+++|+++|+++.|++++|..++.++|++....++.+.+
T Consensus 90 ~---~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 90 Y---FAEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp H---HHTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred h---hCCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 7 55555 78999999999999999999999999999888766665554
No 25
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.67 E-value=3.2e-16 Score=142.27 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=105.7
Q ss_pred HHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCe
Q 008665 309 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDF 388 (558)
Q Consensus 309 ~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~ 388 (558)
....++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+.+|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 3456789999999999999999999999999999999999999999999999999999987 3432 688999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 389 CGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 389 fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
||+.++ +.+.| +..+++|+++|+++.|++++|..++.++|.++.
T Consensus 108 fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHH---HHCCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHh---hcCCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 999987 55565 789999999999999999999999999996554
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.67 E-value=3.1e-16 Score=151.32 Aligned_cols=128 Identities=14% Similarity=0.169 Sum_probs=113.7
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fG 390 (558)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 56789999999999999999999999999999999999999999999999999998864 4577776 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+.++ +.+.| .+..+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 86 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 86 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp CTTT---TTTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred eHHh---cCCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9977 55443 367899999999999999999999999999888766655554
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.67 E-value=5.2e-16 Score=156.56 Aligned_cols=140 Identities=16% Similarity=0.254 Sum_probs=124.8
Q ss_pred HhcCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCc
Q 008665 295 VQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGR 374 (558)
Q Consensus 295 l~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~ 374 (558)
..+||+..|.+...++..+.++++++|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++. +|+
T Consensus 21 ~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~g~ 98 (299)
T 3shr_A 21 MQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV 98 (299)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--TTE
T ss_pred cCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--CCE
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999854 333
Q ss_pred eeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 375 TGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 375 e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
. +..+.+|++|||.++ +.+.| ++++++|.++|+++.|++++|+.++.++|..+........+
T Consensus 99 --~--~~~~~~G~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~ 160 (299)
T 3shr_A 99 --K--LCTMGPGKVFGELAI---LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK 160 (299)
T ss_dssp --E--EEEECTTCEESCSGG---GTTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --E--EEEeCCCCeeeHhHH---hcCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence 2 789999999999988 66666 88999999999999999999999999999766555444443
No 28
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.65 E-value=2.4e-15 Score=143.26 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=113.9
Q ss_pred cccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhh
Q 008665 319 PLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWA 397 (558)
Q Consensus 319 ~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~ 397 (558)
++++.++++.++.++..++.+.|+||++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~--- 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL--- 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTT---
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHH---
Confidence 4667799999999999999999999999999999999999999999999865 5688877 899999999999977
Q ss_pred cCCC-CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 008665 398 LDPK-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKA 476 (558)
Q Consensus 398 l~~~-~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~ 476 (558)
+.+. | +..+++|+++|+++.+++++|..++.++|++....++...+ +.+.....+..........|...
T Consensus 77 ~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rl~~ 146 (210)
T 3ryp_A 77 FEEGQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----RLQVTSEKVGNLAFLDVTGRIAQ 146 (210)
T ss_dssp TSTTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hcCCCC------ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhhCCHHHHHHH
Confidence 5544 4 78999999999999999999999999999887766555444 33333333333344444445544
Q ss_pred HHHhh
Q 008665 477 TEQRL 481 (558)
Q Consensus 477 ~~~~~ 481 (558)
.+..
T Consensus 147 -~L~~ 150 (210)
T 3ryp_A 147 -TLLN 150 (210)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 4433
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.64 E-value=1.5e-15 Score=146.06 Aligned_cols=120 Identities=8% Similarity=0.110 Sum_probs=109.1
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeech
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 391 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe 391 (558)
..+++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++...+|++.+ +..+.+|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~ 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC
Confidence 356889999999999999999999999999999999999999999999999999997667788877 899999999998
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 392 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 392 ~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
| +..+++|+++|+++.|++++|..++.++|++....++.+.+
T Consensus 81 ----------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 122 (220)
T 2fmy_A 81 ----------H------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD 122 (220)
T ss_dssp ----------C------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ----------c------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 2 67899999999999999999999999999888766665544
No 30
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.63 E-value=2e-15 Score=154.83 Aligned_cols=127 Identities=18% Similarity=0.284 Sum_probs=113.5
Q ss_pred HhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 312 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 312 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 468899999999999999999999999999999999999999999999999999998754 4554 4 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 451 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r~~ 451 (558)
+.++ +.+.| ++.+++|+++|+++.|++++|..++ ++|.+..+.++...+..
T Consensus 89 e~~l---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 89 EIAL---LRDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHH---HHTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHHh---cCCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 9988 55665 8899999999999999999999999 99998887776655543
No 31
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.63 E-value=8.9e-15 Score=138.90 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=101.3
Q ss_pred ccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeechhhhhhhcCCC-
Q 008665 324 MDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELLTWALDPK- 401 (558)
Q Consensus 324 l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~- 401 (558)
|+++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+.++ +.+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~---~~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGL---FEKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTT---CC---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHH---hcCCC
Confidence 578999999999999999999999999999999999999999998654 578877 899999999999977 5554
Q ss_pred ---CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 402 ---SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 402 ---~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
| +..+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 76 ~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 76 SEQE------RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp --CB------CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCC------cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 5 78999999999999999999999999999887766555444
No 32
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=139.94 Aligned_cols=124 Identities=17% Similarity=0.289 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEec-CCCEEEecCCCCCeEEEEEeeEEEEEEecCCceee
Q 008665 299 PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCT-EGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGF 377 (558)
Q Consensus 299 P~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~-~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~ 377 (558)
||..|.+.......++++++++|..++++.++.++..++.+.|. +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 45555555555567788999999999999999999999999999 999999999999999999999999886 44553
Q ss_pred eeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEE-EEcceEEEEEeCHHHHHHHHHHhH
Q 008665 378 YNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTV-RALDEVEAFSLRAEELKFVASQFR 437 (558)
Q Consensus 378 ~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv-~Alt~~el~~L~~~d~~~l~~~~p 437 (558)
..+.+|++||+.++ +.+.+ +..++ +|+++|+++.|++++|..++++++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45889999999987 66665 67788 999999999999999999987765
No 33
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.61 E-value=2e-15 Score=145.47 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=105.4
Q ss_pred hhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhh
Q 008665 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEEL 393 (558)
Q Consensus 314 ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~s 393 (558)
+++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678999999999999999999999999999999999999999999999999998666788877 89999999999
Q ss_pred hhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 394 LTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 394 l~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
.| +..+++|+++|+++.|++++|..++.++|.+....++.+.+
T Consensus 76 -------~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 76 -------MH------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp -------SC------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -------CC------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 22 77999999999999999999999999999877655554443
No 34
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.61 E-value=1.2e-14 Score=143.96 Aligned_cols=117 Identities=16% Similarity=0.245 Sum_probs=101.0
Q ss_pred ccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCC
Q 008665 322 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDP 400 (558)
Q Consensus 322 ~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~ 400 (558)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.++ +.+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~---~~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTT---TST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHH---hCC
Confidence 4589999999999999999999999999999999999999999999865 5688877 899999999999977 555
Q ss_pred C-CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 401 K-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 401 ~-~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
. | +..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 130 ~~~------~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 130 GQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp TCB------CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred CCC------CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4 4 78999999999999999999999999999887765554443
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=2.4e-15 Score=151.69 Aligned_cols=127 Identities=19% Similarity=0.384 Sum_probs=113.7
Q ss_pred HHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec--CCceeeeeeeecCCC
Q 008665 309 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD--GGRTGFYNRGMLKEG 386 (558)
Q Consensus 309 ~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~--~g~e~~~~~~~l~~G 386 (558)
.....+++++|+|.+++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678889999999999999999999999999999999999999999999999999999765 677766 8999999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 387 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 387 ~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
++|||.++ +.+.| +..+++|.++|+++.|++++|..++.++|++..+.++.
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 281 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYED 281 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHH
Confidence 99999988 66666 88999999999999999999999999999765544443
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.58 E-value=8.8e-15 Score=140.15 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=97.2
Q ss_pred CcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhh
Q 008665 318 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTW 396 (558)
Q Consensus 318 v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~ 396 (558)
-|.|+..++...+.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~-- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFI-- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGT--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHH--
Confidence 37788888999999999999999999999999999999999999999998865 4688877 899999999999976
Q ss_pred hcCCC-CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 397 ALDPK-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 397 ~l~~~-~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
+.+. + +..+++|+++|+++.|++++|..++.++|++....++.
T Consensus 80 -~~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~ 123 (213)
T 1o5l_A 80 -FSSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKD 123 (213)
T ss_dssp -TSSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred -hcCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 4443 4 78999999999999999999999999999876644443
No 37
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.58 E-value=2.9e-15 Score=135.89 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008665 184 QFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL 248 (558)
Q Consensus 184 ~~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 248 (558)
+....|..|+||+++|+||+||||++|.|..+++++++.+++|++++|+++|.+.+.+.+...+.
T Consensus 80 ~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 80 AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999998765543
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=1.7e-14 Score=144.66 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=114.3
Q ss_pred HHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCC
Q 008665 307 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEG 386 (558)
Q Consensus 307 ~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 386 (558)
......+.++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ . +..+.+|
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G 106 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEG 106 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTT
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCC
Confidence 345567889999999999999999999999999999999999999999999999999999987 343 2 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 387 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 387 ~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
++|||.++ +.+.| +..+++|.++|+++.|++++|..++.++|.+..+.+....+
T Consensus 107 ~~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 107 GSFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp CEECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999988 66666 88999999999999999999999999999887766665554
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=2.1e-14 Score=143.94 Aligned_cols=126 Identities=21% Similarity=0.325 Sum_probs=110.7
Q ss_pred HhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec--CCceeeeeeeecCCCC
Q 008665 310 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD--GGRTGFYNRGMLKEGD 387 (558)
Q Consensus 310 l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~--~g~e~~~~~~~l~~G~ 387 (558)
+...+++++++|.++++..+..++..++.+.|.+|+.|+++||+++.+|||.+|.|+++... ++++.. +..+.+|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 44567788999999999999999999999999999999999999999999999999998643 334444 89999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 008665 388 FCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 446 (558)
Q Consensus 388 ~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~ 446 (558)
+|||.++ +.+.| ++.+++|.++|+++.|++++|..++.++|++..+.++.
T Consensus 232 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 232 YFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp EECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred EecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 9999988 66666 88999999999999999999999999999876655443
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1e-14 Score=142.16 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=106.8
Q ss_pred HhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 310 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 310 l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
+...+++++|+|.+++++.+..++..++.+.|.+|+.|+++||+++.+|||.+|.|+++..+++ . +..+.+|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 4456778899999999999999999999999999999999999999999999999999876554 3 7899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 390 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 390 Ge~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
||.++ +.+.| +..+++|.++|+++.|++++|..++..+|++..
T Consensus 197 Ge~~~---~~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVAL---LNDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHH---HHTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHH---hCCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 99988 55666 889999999999999999999999999997543
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=1.4e-14 Score=153.41 Aligned_cols=129 Identities=18% Similarity=0.249 Sum_probs=117.0
Q ss_pred HHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeee
Q 008665 303 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGM 382 (558)
Q Consensus 303 r~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~ 382 (558)
|.+-......+.++++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 344455667889999999999999999999999999999999999999999999999999999999877788877 899
Q ss_pred cCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHH
Q 008665 383 LKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSR 442 (558)
Q Consensus 383 l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k 442 (558)
+.+|++|||.++ +.+.| +..+++|+++|+++.|++++|..++.++|..+.+
T Consensus 213 l~~G~~fGe~al---l~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 213 YDNRGSFGELAL---MYNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp EESCCEECGGGG---TSCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred ecCCCEEeeHHH---hcCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 999999999988 66666 8899999999999999999999999999976543
No 42
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.6e-15 Score=143.03 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=108.0
Q ss_pred hHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 311 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 311 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+.++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|++ +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 36788999999999999999999999999999999999999999999999999999886 3333 68999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008665 391 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 448 (558)
Q Consensus 391 e~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~ 448 (558)
|.++ +.+.| +..+++|.++|+++.|++++|..++.++|..+........
T Consensus 79 e~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 127 (246)
T 3of1_A 79 ELAL---MYNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLL 127 (246)
T ss_dssp HHHH---HHTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHH
T ss_pred hhHH---hcCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHH
Confidence 9988 55565 8899999999999999999999999999976654444333
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=150.55 Aligned_cols=128 Identities=18% Similarity=0.291 Sum_probs=112.4
Q ss_pred HHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec--CCceeeeeeeecCCC
Q 008665 309 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD--GGRTGFYNRGMLKEG 386 (558)
Q Consensus 309 ~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~--~g~e~~~~~~~l~~G 386 (558)
.++..+++++++|.++++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+ ++++.. +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 345677888999999999999999999999999999999999999999999999999998754 333444 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 008665 387 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHT 447 (558)
Q Consensus 387 ~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~ 447 (558)
++|||.++ +.+.| ++.+++|+++|+++.|++++|..++..+|++..+.+++.
T Consensus 322 d~fGe~al---l~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIAL---LLNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGG---GSCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHH---hCCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999988 67776 889999999999999999999999999998766555433
No 44
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.53 E-value=5.6e-14 Score=126.97 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hhHHHHHHHHHHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQT------YLTS----LTVRLEEMRIKRRD 257 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~------~l~~----~~~~~~~~~~k~~~ 257 (558)
.|..|+||+++|+||+||||++|.|..+++++++.+++|+.+++++++.++. +.+. .+....+.++++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999987 3333 24444556677889
Q ss_pred HHHHHHhCCCCHhHHHH
Q 008665 258 SEQWMHHRWLPQDLRER 274 (558)
Q Consensus 258 ~~~~m~~~~lp~~L~~r 274 (558)
++++++.++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 45
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.52 E-value=9.2e-15 Score=130.14 Aligned_cols=93 Identities=10% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCC
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWL 267 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~~~~k~~~~~~~m~~~~l 267 (558)
.|..|+||+++|+|||||||++|.|..|++++++++++|++++|+++|.+++.+.+......+.+...+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 48889999999999999999999999999999999999999999999999998876554443333322223333444566
Q ss_pred CHhHHHHHHHHHH
Q 008665 268 PQDLRERVRRYDH 280 (558)
Q Consensus 268 p~~L~~rV~~y~~ 280 (558)
+++....+++|.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=148.11 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=113.5
Q ss_pred HHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecC
Q 008665 305 DIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLK 384 (558)
Q Consensus 305 ~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~ 384 (558)
+-.+....+.++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+.
T Consensus 122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~ 195 (381)
T 4din_B 122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNIS 195 (381)
T ss_dssp HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEE
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCC
Confidence 33445567889999999999999999999999999999999999999999999999999999986 3332 67899
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 385 EGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 385 ~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+|++|||.++ +.+.| +..+++|+++|+++.|++++|..++.++|..+.+.+....+
T Consensus 196 ~G~~fGe~al---l~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 196 EGGSFGELAL---IYGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp SSCCBCGGGG---TSCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEchHH---hcCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 9999999988 66666 88999999999999999999999999999877655544433
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.52 E-value=9.4e-14 Score=136.30 Aligned_cols=122 Identities=10% Similarity=0.108 Sum_probs=105.0
Q ss_pred hhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechh
Q 008665 314 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEE 392 (558)
Q Consensus 314 ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~ 392 (558)
++..+..+..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 344444448899999999999999999999999999999999999999999999865 5688877 899999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 393 LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 393 sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
+ +.+. +..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 87 -~---l~~~-------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 132 (250)
T 3e6c_C 87 -L---YPTG-------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT 132 (250)
T ss_dssp -C---SCCS-------CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred -e---cCCC-------CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 3 3322 56899999999999999999999999999887766655554
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=2.6e-14 Score=151.34 Aligned_cols=121 Identities=10% Similarity=0.238 Sum_probs=106.9
Q ss_pred HhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecC-------Cceeeeeeee
Q 008665 310 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG-------GRTGFYNRGM 382 (558)
Q Consensus 310 l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~-------g~e~~~~~~~ 382 (558)
++..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.+ +..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEE
Confidence 455678889999999999999999999999999999999999999999999999999986543 66666 899
Q ss_pred cCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 383 LKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 383 l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
+.+|++|||.++ +.+.| +..+++|+++|+++.|++++|..++..+|++..
T Consensus 342 l~~G~~fGE~al---l~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~ 391 (416)
T 3tnp_B 342 CFRGQYFGELAL---VTNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK 391 (416)
T ss_dssp ECTTCEESGGGG---TCCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred eCCCCEecHHHH---hCCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence 999999999988 67776 899999999999999999999999999997654
No 49
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.49 E-value=4.1e-13 Score=131.24 Aligned_cols=115 Identities=14% Similarity=0.167 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcc---eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCC
Q 008665 326 ERLLDAICERLK---PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPK 401 (558)
Q Consensus 326 ~~~l~~l~~~l~---~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~ 401 (558)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.++ +.+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~---~~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSL---LTGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHH---HSSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHH---hCCC
Confidence 678888888888 999999999999999999999999999999864 4678877 899999999999987 5555
Q ss_pred CCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 402 SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 402 ~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
| ..+..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4 0134899999999999999999999999999888766555443
No 50
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.48 E-value=8.3e-13 Score=128.56 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=97.8
Q ss_pred ccccHHHHHHHHh--hcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhc
Q 008665 322 ANMDERLLDAICE--RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWAL 398 (558)
Q Consensus 322 ~~l~~~~l~~l~~--~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l 398 (558)
++++++.++.+.. .++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++ +|++||+.++ +
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~---~ 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGF---I 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBC---T
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhh---h
Confidence 3678888888885 599999999999999999999999999999998864 4678877 7788 9999999977 5
Q ss_pred CCCCCCCCCCcccEEEEc-ceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008665 399 DPKSVTNLPLSTRTVRAL-DEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 449 (558)
Q Consensus 399 ~~~~~~~l~~s~~tv~Al-t~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~r 449 (558)
.+.+ +.+..++.|+ ++|+++.|++++|..++.++|++....++.+.+
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK 123 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 5543 0026788888 599999999999999999999988776665554
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.46 E-value=1.8e-13 Score=146.78 Aligned_cols=120 Identities=13% Similarity=0.207 Sum_probs=105.5
Q ss_pred HHHhHhhhccCcccccccHHHHHHHHhhcce-eEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCC
Q 008665 308 RHLCLNLVRRVPLFANMDERLLDAICERLKP-SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEG 386 (558)
Q Consensus 308 ~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~-~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 386 (558)
.....+.++++|+|.+++++.++.++..+.. +.|++|++|+++||+++.+|||.+|.|+++..++ . + +..+.+|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~-~--~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G-V--VCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E-E--EEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e-e--EEEecCC
Confidence 3445678999999999999999999999985 4899999999999999999999999999987432 2 3 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeCHHHHHHHHHHhHHHHH
Q 008665 387 DFCGEELLTWALDPKSVTNLPLSTRTVRALD-EVEAFSLRAEELKFVASQFRRLHS 441 (558)
Q Consensus 387 ~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt-~~el~~L~~~d~~~l~~~~p~l~~ 441 (558)
++|||.++ +.+.| +..+++|++ +|+++.|++++|..++.++|.+..
T Consensus 407 ~~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~ 453 (469)
T 1o7f_A 407 DDFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 453 (469)
T ss_dssp CEECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred CEEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence 99999988 67766 899999999 799999999999999999997654
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.45 E-value=3.6e-13 Score=144.52 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=119.7
Q ss_pred cCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCc-
Q 008665 297 NLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGR- 374 (558)
Q Consensus 297 ~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~- 374 (558)
..|+..|.+.......+.++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 457888888888888999999999999999999999999999999999999999999999999999999998754 443
Q ss_pred -eeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHH
Q 008665 375 -TGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQV 444 (558)
Q Consensus 375 -e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l 444 (558)
+.+ +..+.+|++||+.+ + .+.| +..+++|+++|+++.|++++|..++.++|.+....+
T Consensus 106 ~~~~--~~~~~~G~~fGe~~-l---~~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 106 DAVT--ICTLGIGTAFGESI-L---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp GCEE--EEEECTTCEECGGG-G---GTCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred cceE--EEEccCCCCcchhh-h---CCCC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 345 89999999999987 3 3344 789999999999999999999999999997654433
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.45 E-value=2e-13 Score=119.04 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008665 185 FLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTV 246 (558)
Q Consensus 185 ~~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~ 246 (558)
....|..|+||++.|+||+||||++|.|..+++++++.+++|+.++++++|.+++.+++...
T Consensus 58 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 58 QLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999875443
No 54
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.39 E-value=1.4e-12 Score=116.40 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHh
Q 008665 186 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL-EEMRIKRRDSEQWMHH 264 (558)
Q Consensus 186 ~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~~~~~k~~~~~~~m~~ 264 (558)
...|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+...+. +++..+.+.....+-.
T Consensus 38 ~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (139)
T 3eff_K 38 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYT 117 (139)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999999876544333 3333333332322222
Q ss_pred CCCCHhHHHHHHH
Q 008665 265 RWLPQDLRERVRR 277 (558)
Q Consensus 265 ~~lp~~L~~rV~~ 277 (558)
+++ .++.+|+.+
T Consensus 118 ~~~-~~l~~~l~~ 129 (139)
T 3eff_K 118 RTT-RALHERFDR 129 (139)
T ss_dssp HHH-HHHHHHHHH
T ss_pred HHH-HHHHHHHHH
Confidence 222 444455444
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.35 E-value=2e-12 Score=144.86 Aligned_cols=133 Identities=14% Similarity=0.227 Sum_probs=113.0
Q ss_pred HHHHhcCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcc-eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEe
Q 008665 292 EHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLK-PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT 370 (558)
Q Consensus 292 ~~il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~-~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~ 370 (558)
..++... +..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 4455444 44455555555678899999999999999999999998 789999999999999999999999999999875
Q ss_pred cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeCHHHHHHHHHHhHHH
Q 008665 371 DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD-EVEAFSLRAEELKFVASQFRRL 439 (558)
Q Consensus 371 ~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt-~~el~~L~~~d~~~l~~~~p~l 439 (558)
+ + .+ +..+.+|++||+.++ +.+.| +..+++|++ +|+++.|++++|..++.++|.+
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al---~~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHH---HHTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-EE--EEEeCCCCEeehHHH---hCCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 2 3 34 899999999999987 55555 789999999 5999999999999999988875
No 56
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.35 E-value=4.3e-12 Score=148.73 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=111.3
Q ss_pred HHhcCChhHHHHHHHHHhHhhhccCcccccccHHHHHHHHhhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec--
Q 008665 294 LVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-- 371 (558)
Q Consensus 294 il~~LP~~Lr~~I~~~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-- 371 (558)
.|+.-| .-|.+=-..+-...|+++++|+++++..+.+||..|..+.|.+|++|+++||+++++|+|.+|.|.++..+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 34533333444567899999999999999999999999999999999999999999999999999998643
Q ss_pred -CCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHHHHHHHHHhHHHH
Q 008665 372 -GGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLH 440 (558)
Q Consensus 372 -~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~ 440 (558)
++.+.. +..+.+|+.||| ++ +.+.| +++|++|.++|++++|++++|+.+..++|+..
T Consensus 103 ~~~~~~~--v~~l~~G~sFGE-al---l~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 103 SHQDAVT--ICTLGIGTAFGE-SI---LDNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp CTTSCEE--EEEEETTCEECG-GG---GGTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCcee--EEEecCCcchhh-hh---ccCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 233333 789999999999 66 55565 89999999999999999999999999999644
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.34 E-value=8e-12 Score=117.61 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=79.7
Q ss_pred eEecCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 008665 339 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 417 (558)
Q Consensus 339 ~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt 417 (558)
+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||+ ++ +++.| +..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCC------ceeEEEECC
Confidence 57999999999999999999999999999865 4677777 899999999999 88 67666 889999999
Q ss_pred eEEEEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008665 418 EVEAFSLRAEELKFVASQFRRLHSRQVQHTF 448 (558)
Q Consensus 418 ~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~ 448 (558)
+|+++.|++++|. |++....++.+.
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~ 94 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLA 94 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHH
Confidence 9999999999998 776665554443
No 58
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.26 E-value=2.1e-11 Score=115.32 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred HHhhcceeEecCCCEEEecCCCC--CeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCC
Q 008665 332 ICERLKPSLCTEGTCVVREGDPV--VEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPL 408 (558)
Q Consensus 332 l~~~l~~~~~~~ge~Ii~eGd~~--~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~ 408 (558)
+...++.+.|++|++|+++||++ +.+|||.+|.|+++.. .+|++.+ +.++.+|++||+ ++ +.+.|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~---l~~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EA---LFGQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HH---HHTCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hh---cCCCC------
Confidence 34667889999999999999999 9999999999998865 4678877 899999999999 77 44555
Q ss_pred cccEEEEcceEEEEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008665 409 STRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 448 (558)
Q Consensus 409 s~~tv~Alt~~el~~L~~~d~~~l~~~~p~l~~k~l~~~~ 448 (558)
+..+++|+++|+++.| +++|. |++....++...
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~ 101 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLS 101 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHH
Confidence 7899999999999999 99886 766654444433
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=4.1e-11 Score=140.43 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=101.4
Q ss_pred HHhHhhhccCcccccccHHHHHHHHhhcceeE-ecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCC
Q 008665 309 HLCLNLVRRVPLFANMDERLLDAICERLKPSL-CTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGD 387 (558)
Q Consensus 309 ~l~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~-~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~ 387 (558)
....+.++++|.|.+++....+.++..+.... +++|++|++|||.++.+|||.+|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 34567789999999999999999999999765 5789999999999999999999999988643332 78899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEcce-EEEEEeCHHHHHHHHHHhH
Q 008665 388 FCGEELLTWALDPKSVTNLPLSTRTVRALDE-VEAFSLRAEELKFVASQFR 437 (558)
Q Consensus 388 ~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~-~el~~L~~~d~~~l~~~~p 437 (558)
+|||.++ +.+.| +.+||+|.++ |++++++++||.+++.+-.
T Consensus 408 ~FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999998 88887 9999999985 9999999999999997643
No 60
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.18 E-value=9.5e-11 Score=100.65 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL 248 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 248 (558)
.|..|+||+++|+||+||||++|.+..+++++++.+++|+.++++.++.+++.++......
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999886554433
No 61
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.18 E-value=9.7e-11 Score=117.41 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHHHhccccCC-Ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008665 184 QFLSKLFYCLWFGLQNLSTLGQG-LKT-STYIQE----IIFSILIGIAGLVLLALLIGNMQTYLTSLTV 246 (558)
Q Consensus 184 ~~~~~Y~~slywal~tlttvGyG-di~-p~t~~E----~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~ 246 (558)
+.+..+..|+||+++++||+||| |+. |.+... ..+++++++.|.++.+.++|.+.+.++....
T Consensus 176 ~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 176 EWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999 985 666543 7889999999999999999999987765443
No 62
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.15 E-value=7e-12 Score=105.83 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008665 187 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTV 246 (558)
Q Consensus 187 ~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~ 246 (558)
..|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|.+.+.+.+...
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999998876543
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.09 E-value=2e-10 Score=95.66 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
.|..|+||+++|+||+||||++|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 47889999999999999999999999999999999999999999999999998764
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.05 E-value=3.6e-10 Score=91.01 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYL 241 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l 241 (558)
.|..|+||++.|+||+||||++|.|..+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999865
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.03 E-value=1.4e-11 Score=113.31 Aligned_cols=65 Identities=15% Similarity=0.349 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008665 186 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEE 250 (558)
Q Consensus 186 ~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~~ 250 (558)
...|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+..+
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999988866654443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.86 E-value=4.9e-09 Score=105.22 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 186 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 186 ~~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
...|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.++
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999998888664
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.85 E-value=8.2e-09 Score=103.28 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
.|..|+||+++|+||+||||++|.|..+++++++.+++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998864
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.83 E-value=4.1e-09 Score=106.93 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 244 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~ 244 (558)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999877643
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.75 E-value=2.3e-08 Score=101.13 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 244 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~ 244 (558)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999877643
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.50 E-value=1.9e-07 Score=91.97 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 242 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~ 242 (558)
.|..|+||+++|+||+||||++|.|...++++++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999987654
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.46 E-value=7.6e-08 Score=96.28 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEI------IFSILIGIAGLVLLALLIGNMQTYLTSLTV 246 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~------i~~i~i~i~G~~lfa~lig~~~~~l~~~~~ 246 (558)
.|+.|+||++.|+|||||||++|.+..++ +++++++++|+.+++++++.+++.+.....
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998886 599999999999999999999998876554
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.43 E-value=3.7e-07 Score=100.11 Aligned_cols=55 Identities=15% Similarity=0.353 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGN-MQTYLT 242 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~-~~~~l~ 242 (558)
.|+.|+||+++|+||+||||++|.|..+++++++++++|++++++.++. +.+.+.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999988 555443
No 73
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.41 E-value=6.3e-07 Score=90.69 Aligned_cols=59 Identities=19% Similarity=0.386 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhccccCCCcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008665 187 SKLFYCLWFGLQNLSTLGQGLKTST--YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLT 245 (558)
Q Consensus 187 ~~Y~~slywal~tlttvGyGdi~p~--t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~ 245 (558)
..+..++||++.|+||+||||++|+ +...++++++.+++|+++.|+++|.+.+-++...
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4466799999999999999999997 6789999999999999999999999888765443
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.40 E-value=2e-07 Score=91.86 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhccccCCCcccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008665 188 KLFYCLWFGLQNLSTLGQGLKTSTYIQ-------EIIFSILIGIAGLVLLALLIGNMQTYLTSLT 245 (558)
Q Consensus 188 ~Y~~slywal~tlttvGyGdi~p~t~~-------E~i~~i~i~i~G~~lfa~lig~~~~~l~~~~ 245 (558)
.|+.|+||++.|+|||||||+.|.+.. .++++++.+++|+.+++++++.+.++++...
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999885 4999999999999999999999999776543
No 75
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.23 E-value=1.1e-05 Score=77.69 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHhccccCCCccc----Cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 185 FLSKLFYCLWFGLQNLSTLGQGLKTS----TYIQE-IIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 185 ~~~~Y~~slywal~tlttvGyGdi~p----~t~~E-~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
.++....|+||.++++|+.|++|+.. .+..- ..|..++.+.+.++...++|-+.+-+++
T Consensus 162 ~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 162 RWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999998621 11222 3444455566667777777777665543
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.22 E-value=8.3e-08 Score=98.22 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008665 189 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 244 (558)
Q Consensus 189 Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~~ 244 (558)
|..|+||++.|+||+||||++|.|..+++++++++++|+++++++++.+.+.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55699999999999999999999999999999999999999999999999877643
No 77
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.13 E-value=6.3e-06 Score=83.50 Aligned_cols=58 Identities=16% Similarity=0.415 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhccccCCCcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 186 LSKLFYCLWFGLQNLSTLGQGLKTST--YIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 186 ~~~Y~~slywal~tlttvGyGdi~p~--t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
...+..++||++.|+||+||||..|+ +...++++.+.+++|+++.|+++|.+..-++.
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999999864 78899999999999999999999988876654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.29 E-value=0.00066 Score=60.39 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhhhhHHHHHhhcCHHHH
Q 008665 6 AAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQL 74 (558)
Q Consensus 6 ~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~F~iDlls~lPl~~i 74 (558)
...+..++.++-++|.+|.++++..+ ++ .++|+++ -++|++|++|+...
T Consensus 51 ~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------------k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 51 LVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---TC----------------HHHHHHH-STTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---Cc----------------HHHHHHH-HHHHHHHHHHHHHH
Confidence 34577899999999999999999764 21 3689998 68999999999643
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.87 E-value=0.002 Score=56.22 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcceeeEcCCCcccCCCeEEeChhHHHHHhhhhhhHHHHHhhcCHHHH
Q 008665 5 LAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQL 74 (558)
Q Consensus 5 ~~~~~~~~~~i~D~~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~F~iDlls~lPl~~i 74 (558)
....+..+|+++-++|.+|.++++..+ ++ .++|++ |-++|+++++|+..-
T Consensus 35 ~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------------~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 35 YLVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------------TTTTTT-TCGGGTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------------HHHHHH-HHHHHHHHHHHHHHH
Confidence 445678899999999999999999763 21 257999 999999999998543
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=77.52 E-value=10 Score=31.16 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=48.6
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 415 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~A 415 (558)
+....+.||..+-..-.+..++++|++|.+++.. +++ ...+.+||.+- +.+. ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLY-------LGAG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CcEEEEe
Confidence 4455678898887766677899999999998765 233 46789998874 3322 3467888
Q ss_pred cceEEEEEe
Q 008665 416 LDEVEAFSL 424 (558)
Q Consensus 416 lt~~el~~L 424 (558)
.++++++.+
T Consensus 97 ~~~~~~~~~ 105 (114)
T 3fjs_A 97 ITNTSLLVT 105 (114)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 888776543
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=76.42 E-value=9.8 Score=35.56 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=53.4
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 415 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~A 415 (558)
+....+.||+.+=..-.+.+++++|++|.+++... |+ ...+.+||++= +.+. ....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLE-------ITAN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEE-------ECSS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 45566899999988888899999999999998763 33 36789998763 3322 4678999
Q ss_pred cceEEEEEe
Q 008665 416 LDEVEAFSL 424 (558)
Q Consensus 416 lt~~el~~L 424 (558)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999977
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=73.44 E-value=13 Score=30.11 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=42.8
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceE
Q 008665 340 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEV 419 (558)
Q Consensus 340 ~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~ 419 (558)
.+.+|..+-....+..++++|++|.+.+.. +++ ...+.+||.+= +.+. ....+++.+++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------i~~~-------~~H~~~~~~~~ 102 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLM-------VPAH-------KIHAIAGKGRF 102 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCBEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEE-------ECCC-------CcEEEEeCCCc
Confidence 356776654445567899999999998765 333 46799999873 3322 33556666777
Q ss_pred EEEEe
Q 008665 420 EAFSL 424 (558)
Q Consensus 420 el~~L 424 (558)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 83
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=73.12 E-value=3.7 Score=46.10 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008665 187 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 243 (558)
Q Consensus 187 ~~Y~~slywal~tlttvGyGdi~p~t~~E~i~~i~i~i~G~~lfa~lig~~~~~l~~ 243 (558)
.....++|+++.+++..| ++..|.+...+++.++++++++++.+...+++++++..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346689999999998877 67889999999999999999999999999999999974
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=68.88 E-value=24 Score=28.37 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=46.2
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 415 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~A 415 (558)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+.+||.+- +.+. ....+++
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIV-------MPAG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 3445677888765544556799999999998765 333 35789999874 3322 3456777
Q ss_pred cceEEEEEe
Q 008665 416 LDEVEAFSL 424 (558)
Q Consensus 416 lt~~el~~L 424 (558)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 778877665
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=67.64 E-value=31 Score=27.71 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=46.3
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 415 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~A 415 (558)
+....+.||..+-.--....++++|++|.+++.. +|+ ...+.+||.+= +.+. ....+++
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFF-------VPPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEE-------ECcC-------CceeeEe
Confidence 3445578887754444457789999999998766 333 46799999863 3322 3466777
Q ss_pred cceEEEEEe
Q 008665 416 LDEVEAFSL 424 (558)
Q Consensus 416 lt~~el~~L 424 (558)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778887776
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=66.78 E-value=39 Score=27.92 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=33.4
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 338 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+.||..+-.. ...+++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3456788765444 378899999999999876 344 46799999874
No 87
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=66.45 E-value=4.9 Score=24.31 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 008665 456 RTWAACFIQATWRRKSQRK 474 (558)
Q Consensus 456 ~~~~~~~~q~~~~~~~~r~ 474 (558)
+++++..||.+|+++..|.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5689999999999987653
No 88
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=66.11 E-value=5 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhh
Q 008665 455 WRTWAACFIQATWRRKSQRKK 475 (558)
Q Consensus 455 ~~~~~~~~~q~~~~~~~~r~~ 475 (558)
-+++++..||++|+++.-|..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999976543
No 89
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=58.15 E-value=35 Score=27.86 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=48.8
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 415 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~A 415 (558)
+....+.||..+-..-....++++|++|.+++.. +|+ ...+.+||.+- +.+. ....+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 101 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT-------IPGG-------VRHRART 101 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE-------ECTT-------CCEEEEC
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE-------ECCC-------CcEEeEE
Confidence 4455678888776555566899999999998766 233 46789998863 3222 3355666
Q ss_pred cce-EEEEEe---CHHHHHHH
Q 008665 416 LDE-VEAFSL---RAEELKFV 432 (558)
Q Consensus 416 lt~-~el~~L---~~~d~~~l 432 (558)
.++ |.++.+ .++|+...
T Consensus 102 ~~~~~~~l~v~~p~~~d~~~~ 122 (126)
T 4e2g_A 102 FEDGCLVLDIFSPPREDYARM 122 (126)
T ss_dssp CTTCEEEEEEEESCCHHHHHH
T ss_pred CCCCEEEEEEECCCCcchhhh
Confidence 666 665543 33455443
No 90
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=56.85 E-value=76 Score=28.28 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHhhcce----eEecCCCEEEe-cCC----------CCCeEEEEEeeEEEEEEecCC---ceeeeeeeecCCCCe
Q 008665 327 RLLDAICERLKP----SLCTEGTCVVR-EGD----------PVVEMLLIIRGSLESVTTDGG---RTGFYNRGMLKEGDF 388 (558)
Q Consensus 327 ~~l~~l~~~l~~----~~~~~ge~Ii~-eGd----------~~~~~yfI~~G~v~~~~~~~g---~e~~~~~~~l~~G~~ 388 (558)
+-+++....++| +..-.+++++. -|. +.++++++++|.+.+-..++| ++ +....+.+||+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdm 89 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDS 89 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCE
Confidence 445666677777 54444666644 222 346999999999998887755 11 11478999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHHH
Q 008665 389 CGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEE 428 (558)
Q Consensus 389 fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~d 428 (558)
|= +.+. -..+-++-.++..+.+.+..
T Consensus 90 fl-------lP~g-------vpHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 90 YL-------LPGN-------VPHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp EE-------ECTT-------CCEEEEECTTCEEEEEEECC
T ss_pred EE-------cCCC-------CCcCCcccCCcEEEEEEecC
Confidence 84 3322 12334445777777776543
No 91
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=52.80 E-value=16 Score=32.64 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=38.9
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-eEEEEEeCHH
Q 008665 353 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD-EVEAFSLRAE 427 (558)
Q Consensus 353 ~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt-~~el~~L~~~ 427 (558)
+.++++++++|.+.+-..++|+.. ...+.+||+|= +... -..+-++-+ +|..+.+.+.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~-------lP~g-------vpH~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL-------LPPH-------VRHSPQRPEAGSACLVIERQ 112 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE-------ECTT-------CCEEEEBCCTTCEEEEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE-------eCCC-------CCcCccccCCCCEEEEEEeC
Confidence 467999999999998887766432 47899999984 3222 223344455 6666666544
No 92
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=47.44 E-value=27 Score=27.69 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=33.8
Q ss_pred cceeEecCCCEEEec--CCC-CCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVRE--GDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~e--Gd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||..+-.. -.. ..++++|++|.+++.. +++ ...+.+||.+-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344567888876544 344 6799999999998765 233 46788998763
No 93
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=47.20 E-value=42 Score=25.92 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=35.0
Q ss_pred CeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeC
Q 008665 355 VEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLR 425 (558)
Q Consensus 355 ~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~ 425 (558)
.++++|++|.+.+... ++ ...+.+||.+- +.+. ....+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEE
Confidence 7999999999987653 33 35788998763 3332 34556666888888775
No 94
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=46.98 E-value=58 Score=30.10 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=48.8
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 415 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~A 415 (558)
+....+.||..+-..-.+..++++|++|.+++.. +|+ ...+.+||++= +.+. ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAV-------LPAN-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE-------ECTT-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CcEEEEe
Confidence 4456788999887666667899999999998765 233 46789999864 3222 3467788
Q ss_pred -cceEEEEEe
Q 008665 416 -LDEVEAFSL 424 (558)
Q Consensus 416 -lt~~el~~L 424 (558)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 95
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=46.84 E-value=32 Score=26.60 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=32.5
Q ss_pred ceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||..+-..-.. ..++++|++|.+.+... ++ ...+.+||.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 44557788876544434 36799999999987652 33 46789999863
No 96
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=46.72 E-value=48 Score=28.87 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeC
Q 008665 353 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLR 425 (558)
Q Consensus 353 ~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~ 425 (558)
..+++++|++|.+++.. +|+ ...+.+||.+= +... ...+..+.++|+++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~-------iP~G-------~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF-------IPKG-------SKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE-------ECCC-------CEEEEEeCCCEEEEEEE
Confidence 46789999999999875 444 46799999873 3221 23445555777766553
No 97
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=46.56 E-value=33 Score=29.50 Aligned_cols=61 Identities=8% Similarity=0.127 Sum_probs=40.3
Q ss_pred cCCCCCeEEEEEeeEEEEEEecCC----ceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeC
Q 008665 350 EGDPVVEMLLIIRGSLESVTTDGG----RTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLR 425 (558)
Q Consensus 350 eGd~~~~~yfI~~G~v~~~~~~~g----~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~ 425 (558)
.-+..|++|+|++|.+++...+++ +.+ ...+.+|+++- . |+. -..+-.|-++|.++.+.
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~---~V~l~~Ge~yv-------V-PkG------veH~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIE---LTLMEKGKVYN-------V-PAE------CWFYSITQKDTKMMYVQ 108 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEE---EEECCTTCCEE-------E-CTT------CEEEEEECTTCEEEEEE
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccc---eEEecCCCEEE-------e-CCC------ccCcccCCCceEEEEEE
Confidence 345679999999999998865421 111 46889999884 2 221 23455667788887775
Q ss_pred HH
Q 008665 426 AE 427 (558)
Q Consensus 426 ~~ 427 (558)
..
T Consensus 109 p~ 110 (140)
T 3d0j_A 109 DS 110 (140)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 98
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=46.11 E-value=59 Score=28.96 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=32.4
Q ss_pred eEecCCCEEE---ecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 339 SLCTEGTCVV---REGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 339 ~~~~~ge~Ii---~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+.||...- .--.+..++++|++|.+++...++|... ...+.+||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3466776543 1233457999999999998774422211 46899999874
No 99
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=45.85 E-value=1.1e+02 Score=24.24 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=33.6
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||..-.. ....++++|++|.+++.. ++|+ ...+.+||.+-
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-~~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTT-EDGK-----KYVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-TTCC-----EEEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEE-CCCC-----EEEECCCCEEE
Confidence 3556778876554 457899999999998776 3244 46799999874
No 100
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=44.49 E-value=30 Score=28.30 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=33.4
Q ss_pred cceeEecCCCEEEecCCCC-CeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPV-VEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~-~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||..+-..-... .++++|++|.++... ++|+ ...+.+||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCe-----EEEeCCCCEEE
Confidence 4445678888765544553 789999999998754 2344 46789999763
No 101
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=41.88 E-value=29 Score=30.94 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=36.0
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||......-..++++++|++|.+++...+.+... ...+.+||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 45566788877655433468999999999987754332221 46899999874
No 102
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=41.84 E-value=55 Score=27.25 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=31.0
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 340 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 340 ~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...||..-.+..+ .+++++|++|.+.+... +|+ ...+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEE
Confidence 4566666554332 38999999999987653 444 35799999885
No 103
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.68 E-value=30 Score=28.76 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=31.3
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 340 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 340 ~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...||..-... +..++++.|++|.+.+... +|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEE
Confidence 45666665554 3345999999999988654 454 46799999885
No 104
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=39.41 E-value=49 Score=29.99 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=47.6
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008665 335 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVR 414 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~ 414 (558)
.+....+.||..+-.......++.+|++|..+ ++ ...+.+||++= +++. +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~-------~p~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEI-------ADQE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEE-------ECSS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEE-------eCcC-------CccCCE
Confidence 45667789999999888899999999999965 22 24688998863 2222 445566
Q ss_pred E--cceEEEEEe
Q 008665 415 A--LDEVEAFSL 424 (558)
Q Consensus 415 A--lt~~el~~L 424 (558)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 6 678888765
No 105
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=39.34 E-value=53 Score=31.67 Aligned_cols=59 Identities=8% Similarity=0.222 Sum_probs=41.1
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEEEEeCHH
Q 008665 352 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAE 427 (558)
Q Consensus 352 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el~~L~~~ 427 (558)
+..++++++++|.+.+-..++|+-. ...+++|++|= +.+. -..+=++-++|..+++.+.
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfl-------lP~g-------v~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFL-------LPAR-------VPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEE-------ECTT-------CCEEEEECTTCEEEEEEEC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEE-------eCCC-------CCcCCcccCCeEEEEEeec
Confidence 3568999999999998887766422 46899999883 3222 2344455678888888643
No 106
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=39.19 E-value=40 Score=28.88 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=35.2
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+....++||..+-.-..+..+.++|++|..+. .+|.... -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 55677899999887777778889999999972 2332210 14678888874
No 107
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=37.66 E-value=1.3e+02 Score=23.30 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred ceeEecCCCEEEecCCCC-CeE-EEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008665 337 KPSLCTEGTCVVREGDPV-VEM-LLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVR 414 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~-~~~-yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~ 414 (558)
....+.+|..+-..-... .++ ++|++|.+++...+ |+ ...+.+||.+- +.+. ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLV-------APIS-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEE-------EETT-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEE-------eCCC-------CcEEEE
Confidence 334567887765433333 466 89999999876531 33 46789998763 2221 345667
Q ss_pred EcceEEEEEe
Q 008665 415 ALDEVEAFSL 424 (558)
Q Consensus 415 Alt~~el~~L 424 (558)
+.++++++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 7777766543
No 108
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=36.92 E-value=65 Score=29.10 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=35.7
Q ss_pred cceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecCC---ceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGG---RTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~g---~e~~~~~~~l~~G~~fG 390 (558)
+....+.||...-.--.+ ..++++|++|.+++...+++ .+.. ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 445667888765433334 57999999999998765432 2222 36799999874
No 109
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=36.72 E-value=39 Score=29.69 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=33.0
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||..+-..-....++++|++|.+.+.. +++ ...+.+||++-
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3344566776654434457899999999998765 233 46789999874
No 110
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=34.57 E-value=43 Score=26.45 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=40.3
Q ss_pred cCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcceEEE
Q 008665 342 TEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEA 421 (558)
Q Consensus 342 ~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt~~el 421 (558)
.+|+...+.-+...++++|++|.+++...+ ++ ...+.+||.+- +.+. ....+.+.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAV-------VPKS-------VSHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEE-------ECTT-------CCEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEE-------ECCC-------CcEeeEeCCCeEE
Confidence 455433233222389999999999876633 23 46799999873 3322 2344555577888
Q ss_pred EEeCHHH
Q 008665 422 FSLRAEE 428 (558)
Q Consensus 422 ~~L~~~d 428 (558)
+.+....
T Consensus 96 l~i~~~~ 102 (107)
T 2i45_A 96 VLIELSD 102 (107)
T ss_dssp EEEECC-
T ss_pred EEEECCC
Confidence 8776543
No 111
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=34.36 E-value=21 Score=27.98 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=31.4
Q ss_pred ceeEecCCCEEEecCCCC-CeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDPV-VEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~-~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||...-..-.+. .++++|++|.+++... +|.+ ...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEE
Confidence 345567777542222333 3599999999987653 3311 46799999874
No 112
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=32.93 E-value=62 Score=29.99 Aligned_cols=45 Identities=13% Similarity=-0.026 Sum_probs=30.0
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 340 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 340 ~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
.+.||...=.--.+.+++|+|++|.++.... +|+ ...+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAP-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEET-TSC-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCC-----EEecCCCCEEE
Confidence 3444444333345678999999999987664 333 46788988763
No 113
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=32.84 E-value=1.1e+02 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=30.7
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 338 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+.||..-.. ...+++++|++|.+++... |+ ...+.+||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEE
Confidence 345677743233 2468999999999987653 44 35799999875
No 114
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=32.68 E-value=42 Score=27.01 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=29.2
Q ss_pred eEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeee-ecCCCCeec
Q 008665 339 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRG-MLKEGDFCG 390 (558)
Q Consensus 339 ~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~-~l~~G~~fG 390 (558)
..+.||...-.--....++++|++|.+++... ++ .. .+.+||.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQ-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET--TS-----CCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CE-----EEEEeCCCCEEE
Confidence 34556655422223467899999999987652 33 24 788998763
No 115
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=31.77 E-value=1.7e+02 Score=27.21 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=42.7
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 008665 338 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 417 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Alt 417 (558)
...+.||.-.-..- .+++.+|++|.+++.. +|+ ...+.+||++- +... ....+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVY-------LPAG-------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEE-------ECTT-------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CCEEEEeCC
Confidence 45678887655442 7789999999998765 344 46799999874 3222 234444447
Q ss_pred eEEEEEeC
Q 008665 418 EVEAFSLR 425 (558)
Q Consensus 418 ~~el~~L~ 425 (558)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777663
No 116
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=31.12 E-value=37 Score=29.61 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=30.7
Q ss_pred eEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 339 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 339 ~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456666554333456789999999998775 333 46788998763
No 117
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=31.09 E-value=69 Score=27.23 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=32.1
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||..+-..-....++++|++|.+++... +++ ...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 3455677776643334457899999999987653 221 15788998874
No 118
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=30.74 E-value=48 Score=27.27 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.8
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 338 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+.||...-.--....++++|++|.+++... ++ ...+.+||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 344566665543334578999999999987653 33 35788888763
No 119
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=30.63 E-value=35 Score=30.07 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=31.5
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 338 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34456766654444456789999999998765 333 46789999773
No 120
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=30.47 E-value=52 Score=27.42 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=32.1
Q ss_pred ceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||..+-.--.. ..++++|++|.+.+.. +++ ...+.+||.+-
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 34567888766433333 4789999999998765 233 46788998763
No 121
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=29.89 E-value=47 Score=28.69 Aligned_cols=51 Identities=6% Similarity=-0.023 Sum_probs=32.8
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCc-----eeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGR-----TGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~-----e~~~~~~~l~~G~~fG 390 (558)
....+.||..+-..-....++++|++|.+.+...++++ .. ...+.+||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 34456777654222234568999999999887755221 01 46799998863
No 122
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=28.79 E-value=48 Score=29.56 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=32.0
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
+....+.||...-.--....+..+|++|.+++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 344556777643333334567889999999886532 33 3679999998
No 123
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=28.78 E-value=51 Score=26.63 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 352 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 352 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+++++|++|.+++...++ .+ ...+.+||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~-~~----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGD-TA----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTC-SS----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCE-EE----EEEECCCCEEE
Confidence 456799999999998876332 11 15789999874
No 124
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=28.25 E-value=85 Score=31.04 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=35.2
Q ss_pred ceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||...--.-.. ..++++|++|.+++...+ +|+.. ...+.+||.+-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34557788865433344 789999999999988754 34322 46799999763
No 125
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=27.91 E-value=82 Score=29.34 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=35.3
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
+....+.||..+-.--.+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445688998876666667899999999998876 333 4678999844
No 126
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=27.81 E-value=80 Score=27.95 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=31.5
Q ss_pred eEecCCCEEEe--cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 339 SLCTEGTCVVR--EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 339 ~~~~~ge~Ii~--eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+.||...-. -.....++++|++|.+++.. +++ ...+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45678776652 22345799999999998765 333 46799999873
No 127
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=27.67 E-value=2.4e+02 Score=22.60 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=47.1
Q ss_pred eeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEc-
Q 008665 338 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL- 416 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Al- 416 (558)
...+.||...-..-....++++|++|.++... +|+ ...+.+||.+- +.+. ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~-------i~~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLII-------IPLD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEE-------ECCC-------CcEEeEeCC
Confidence 34456666443333456789999999998766 333 46789998874 3222 22344443
Q ss_pred -ceEE--EEEeCHHHHHHHHHHhH
Q 008665 417 -DEVE--AFSLRAEELKFVASQFR 437 (558)
Q Consensus 417 -t~~e--l~~L~~~d~~~l~~~~p 437 (558)
++++ ++.++.+-+..++.+-+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3344 44567776666665544
No 128
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=27.13 E-value=85 Score=31.41 Aligned_cols=52 Identities=21% Similarity=0.100 Sum_probs=36.3
Q ss_pred cceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||...-..-.+..++++|++|.+++...+ +|+.. ...+.+||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344567888866443344789999999999988755 35532 24789999863
No 129
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=26.87 E-value=57 Score=33.48 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=38.8
Q ss_pred hhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 334 ERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 334 ~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+....+.||..+..--...+++++|++|..++...+.+... ...+.+||.+-
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 3456777899987766655577999999999997654433222 46789999874
No 130
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=25.68 E-value=43 Score=34.14 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||+.+-..-....++|||++|.-..... +|+ ...+++||++-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~-----~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH-----KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE-----EEEEcCCCEEE
Confidence 5667888888766555667899999998754343 444 36799999884
No 131
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.66 E-value=1.1e+02 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=36.1
Q ss_pred cceeEecCCCEEEecCCCC-CeEEEEEeeEEEEEEec-CCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPV-VEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~-~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||..+-..-.+. .++++|++|.+++...+ +|+.. ...+.+||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 4455678888765443444 89999999999887533 34311 36789999874
No 132
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=25.63 E-value=53 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=30.9
Q ss_pred ceeEecCCCEEE--ecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 337 KPSLCTEGTCVV--REGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 337 ~~~~~~~ge~Ii--~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+.||.... +.-+..+++++|++|.+++... ++ ...+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345567777542 2222236999999999987763 33 36788998764
No 133
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=24.89 E-value=67 Score=33.13 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=39.3
Q ss_pred hhcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 334 ERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 334 ~~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+....+.||..+..--..++++++|++|..++...+++... ...+.+||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 3456778899998877645577999999999987764433222 46788998874
No 134
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=24.45 E-value=74 Score=29.81 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=36.6
Q ss_pred hhcceeEecCCCEEEe-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 334 ERLKPSLCTEGTCVVR-EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 334 ~~l~~~~~~~ge~Ii~-eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+....++||..+=. +-....+.++|++|++.+.. +|+ ...+.+||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 3456667889987764 44556789999999997654 344 46799999875
No 135
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=23.91 E-value=1e+02 Score=26.05 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=30.6
Q ss_pred eeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCce-eeeeeeecCCCCee
Q 008665 338 PSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRT-GFYNRGMLKEGDFC 389 (558)
Q Consensus 338 ~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~g~e-~~~~~~~l~~G~~f 389 (558)
...+.||..+-..-.. .+++++|++|.+.+...+.... .. ...+.+||.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~--~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF--QEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE--EEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee--eEEECCCCEE
Confidence 3456777655332233 4589999999998876432110 00 1578899875
No 136
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.61 E-value=1.7e+02 Score=26.99 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=33.6
Q ss_pred eeEecC-CCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 338 PSLCTE-GTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 338 ~~~~~~-ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+.| |..+-..-.+..++++|++|.+++... ++ ...+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GC-----TVEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEE
Confidence 345788 777655555677899999999987653 33 35699999875
No 137
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=22.68 E-value=59 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=27.9
Q ss_pred EecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 340 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 340 ~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
.+.||..+-.--....++++|++|.+++....+|+ ...+.+||++-
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 34455443222234556778999999876323343 46789999763
No 138
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=22.43 E-value=80 Score=32.69 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 335 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
.+....+.||..+...-...+++++|++|.+++...+.+... ...+.+||.+-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 455567889987766644578999999999987754333222 57899999874
No 139
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=22.39 E-value=1.2e+02 Score=30.39 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=35.7
Q ss_pred cceeEecCCCEEEecCCCC-CeEEEEEeeEEEEEEe-cCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVREGDPV-VEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~eGd~~-~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||...-..-.+. .++++|++|.+++... .+|+.. ...+.+||.+-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEE
Confidence 3445678888765444445 8999999999987754 333322 46789999874
No 140
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=22.21 E-value=1.6e+02 Score=28.17 Aligned_cols=70 Identities=9% Similarity=0.157 Sum_probs=45.3
Q ss_pred ceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEEEc
Q 008665 337 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL 416 (558)
Q Consensus 337 ~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~Al 416 (558)
-...+.||..--......+++.||++|.+++... +|+ ...+.+||++= +.+. ...+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~-~g~-----~~~L~~Gds~y-------~p~~-------~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSS-----SKKLTVDSYAY-------LPPN-------FHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEE-------ECTT-------CCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEEC-CCc-----EEEEcCCCEEE-------ECCC-------CCEEEEeC
Confidence 3456788876422334467899999999988653 144 35799998873 3222 34555666
Q ss_pred ceEEEEEeCH
Q 008665 417 DEVEAFSLRA 426 (558)
Q Consensus 417 t~~el~~L~~ 426 (558)
++++++.+.+
T Consensus 133 ~~Ar~l~V~k 142 (266)
T 4e2q_A 133 ESATLVVFER 142 (266)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 8888888754
No 141
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=21.88 E-value=58 Score=28.80 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=24.6
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 352 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 352 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
....+++||++|.+++.. +++ ...+.+||.+=
T Consensus 108 h~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 356789999999998876 333 45799999874
No 142
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.69 E-value=91 Score=29.87 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=37.4
Q ss_pred hhcceeEecCCCEEEe-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 334 ERLKPSLCTEGTCVVR-EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 334 ~~l~~~~~~~ge~Ii~-eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
..+....+.||..|-. +-....+.++|++|+..+.. +|+ ...+.+||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4466778899999975 44555689999999997654 344 46799999874
No 143
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=21.66 E-value=69 Score=18.46 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhhh...
Q 008665 457 TWAACFIQATWRRKSQRK... 474 (558)
Q Consensus 457 ~~~~~~~q~~~~~~~~r~... 474 (558)
-.+..+|+..|++..+|+
T Consensus 6 iYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHhccC...
Confidence 356889999999887663
No 144
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.46 E-value=89 Score=29.73 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=34.3
Q ss_pred cceeEecCCCEEEe-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 336 LKPSLCTEGTCVVR-EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 336 l~~~~~~~ge~Ii~-eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
+....+.||..+-. .-....++++|++|.+.+.. +++ ...+.+||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~-----~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE-----WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 44456788887643 33456799999999998765 233 46799999874
No 145
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=21.25 E-value=83 Score=25.54 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=28.4
Q ss_pred eeEecCCCEEE--ecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeec
Q 008665 338 PSLCTEGTCVV--REGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 338 ~~~~~~ge~Ii--~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fG 390 (558)
...+.||..+- ..-+....+|+|++|.+.+... ++ ...+.+||++=
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 77 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID--GE-----KIELQAGDWLR 77 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET--TE-----EEEEETTEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34567776542 2222234577799999987652 33 46788988763
No 146
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=21.07 E-value=1.7e+02 Score=30.71 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHhhcceeEecCCCEEEecCCC-CCeEEEEEeeEEEEEEecC-CceeeeeeeecCCCCeec
Q 008665 329 LDAICERLKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCG 390 (558)
Q Consensus 329 l~~l~~~l~~~~~~~ge~Ii~eGd~-~~~~yfI~~G~v~~~~~~~-g~e~~~~~~~l~~G~~fG 390 (558)
+..+-..+....+.||..+---=.+ ++++++|++|.+++...+. |+..+ ...+.+||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 3444455677778898866443333 6899999999999876543 44332 35699999874
No 147
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=20.82 E-value=67 Score=32.38 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 335 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
.+....+.||+.+-..-....++|||++|.-.....+|.+ ..+++||++
T Consensus 104 ~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~------~~~~~GD~v 152 (368)
T 3nw4_A 104 WAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP------VRMSRGDLL 152 (368)
T ss_dssp EEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEE------EEEETTCEE
T ss_pred EEEEEEECCCCccCceecccceEEEEEecceEEEEECCEE------EEEeCCCEE
No 148
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=20.58 E-value=76 Score=27.25 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=30.9
Q ss_pred ceeEecCCCE-E-EecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCee
Q 008665 337 KPSLCTEGTC-V-VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 389 (558)
Q Consensus 337 ~~~~~~~ge~-I-i~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~f 389 (558)
....+.||.. . .+.-....++++|++|.+.+.. +++ ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 3456777773 2 1112256899999999998765 233 4678999987
No 149
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=20.52 E-value=1.5e+02 Score=25.84 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=47.0
Q ss_pred hcceeEecCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeeeeeeecCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008665 335 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVR 414 (558)
Q Consensus 335 ~l~~~~~~~ge~Ii~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G~~fGe~sl~~~l~~~~~~~l~~s~~tv~ 414 (558)
......+.||..+-.-..+..+..+|++|..+.. +++ ..+.+|+++=+- . .+..+..
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~--e~~-------~~~~~Gd~~~~P--------~------g~~H~~~ 99 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK--EHD-------WVAHAGSVVYET--------A------STRHTPQ 99 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEET--TSS-------CCBCTTCEEEEC--------S------SEEECEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe--CCC-------eEECCCeEEEEC--------C------CCcceeE
Confidence 4455678999988777777788999999998641 221 368899886421 1 2566777
Q ss_pred Ec----ceEEEEEe
Q 008665 415 AL----DEVEAFSL 424 (558)
Q Consensus 415 Al----t~~el~~L 424 (558)
+. ++|.++..
T Consensus 100 ~~~~~~e~~~~~~~ 113 (159)
T 3ebr_A 100 SAYAEGPDIITFNI 113 (159)
T ss_dssp ESSSSSSCEEEEEE
T ss_pred eCCCCCCCEEEEEE
Confidence 77 78888884
Done!