Query 008666
Match_columns 557
No_of_seqs 420 out of 1995
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 15:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 2E-125 5E-130 1025.4 50.5 551 5-557 52-606 (606)
2 COG5239 CCR4 mRNA deadenylase, 100.0 1.7E-51 3.8E-56 409.8 15.6 312 206-553 30-367 (378)
3 KOG0620 Glucose-repressible al 100.0 6.4E-49 1.4E-53 406.5 13.7 330 177-556 2-356 (361)
4 KOG2338 Transcriptional effect 100.0 1.6E-45 3.5E-50 381.5 23.4 316 205-551 115-493 (495)
5 TIGR03395 sphingomy sphingomye 99.9 2.6E-25 5.7E-30 226.1 22.6 186 207-430 1-200 (283)
6 PRK11756 exonuclease III; Prov 99.9 3E-24 6.4E-29 217.3 18.2 254 207-551 1-268 (268)
7 COG3568 ElsH Metal-dependent h 99.9 1.5E-23 3.3E-28 205.8 15.6 241 206-552 9-258 (259)
8 PRK05421 hypothetical protein; 99.9 3.9E-22 8.6E-27 201.2 20.2 157 203-421 40-196 (263)
9 COG0708 XthA Exonuclease III [ 99.9 1.8E-21 4E-26 191.7 15.4 247 207-551 1-261 (261)
10 TIGR00195 exoDNase_III exodeox 99.9 1.2E-20 2.7E-25 189.3 17.4 241 207-549 1-254 (254)
11 PTZ00297 pantothenate kinase; 99.9 5.2E-20 1.1E-24 219.8 24.5 188 203-430 7-226 (1452)
12 TIGR00633 xth exodeoxyribonucl 99.8 3.2E-19 7E-24 178.5 18.8 150 207-421 1-155 (255)
13 KOG3873 Sphingomyelinase famil 99.8 4.5E-19 9.7E-24 177.3 14.2 274 204-556 6-297 (422)
14 PRK13911 exodeoxyribonuclease 99.8 1.7E-18 3.6E-23 173.1 17.8 235 207-549 1-249 (250)
15 smart00476 DNaseIc deoxyribonu 99.8 8.8E-18 1.9E-22 169.1 19.9 169 205-421 16-190 (276)
16 KOG2756 Predicted Mg2+-depende 99.7 7E-17 1.5E-21 155.7 15.0 158 203-418 96-254 (349)
17 PF03372 Exo_endo_phos: Endonu 99.7 1.1E-16 2.3E-21 156.5 15.2 155 238-424 17-173 (249)
18 PLN03158 methionine aminopepti 99.7 1.8E-17 3.8E-22 175.0 6.0 53 13-66 7-59 (396)
19 PRK15251 cytolethal distending 99.6 1.6E-13 3.6E-18 136.2 18.1 165 202-428 20-205 (271)
20 COG3021 Uncharacterized protei 99.5 1.5E-13 3.2E-18 137.7 11.9 159 203-429 85-244 (309)
21 COG2374 Predicted extracellula 99.4 2.5E-12 5.4E-17 140.2 16.0 278 203-553 460-790 (798)
22 KOG2738 Putative methionine am 99.3 4.4E-13 9.5E-18 131.3 3.9 70 14-88 5-75 (369)
23 smart00128 IPPc Inositol polyp 99.1 2.8E-09 6.1E-14 110.1 16.1 64 368-431 137-209 (310)
24 KOG0566 Inositol-1,4,5-triphos 98.1 3E-05 6.4E-10 87.2 12.5 65 369-433 673-743 (1080)
25 PF14529 Exo_endo_phos_2: Endo 97.7 6.3E-05 1.4E-09 65.8 5.5 43 491-546 77-119 (119)
26 COG5411 Phosphatidylinositol 5 97.3 0.00091 2E-08 70.2 8.9 50 369-418 165-217 (460)
27 PF01753 zf-MYND: MYND finger; 97.0 0.00058 1.3E-08 47.4 2.7 34 20-60 2-35 (37)
28 PLN03191 Type I inositol-1,4,5 96.7 0.0043 9.4E-08 68.2 7.7 53 368-420 419-482 (621)
29 KOG1294 Apurinic/apyrimidinic 96.2 0.038 8.1E-07 57.5 11.0 64 476-551 265-335 (335)
30 COG5239 CCR4 mRNA deadenylase, 96.0 0.0068 1.5E-07 62.4 4.4 82 345-434 121-202 (378)
31 KOG1710 MYND Zn-finger and ank 93.2 0.046 1E-06 54.6 1.9 41 15-63 319-360 (396)
32 PTZ00312 inositol-1,4,5-tripho 92.5 0.36 7.7E-06 48.8 6.9 61 368-429 79-151 (356)
33 KOG1976 Inositol polyphosphate 91.3 0.26 5.5E-06 49.8 4.4 61 368-429 168-240 (391)
34 PF04438 zf-HIT: HIT zinc fing 89.0 0.21 4.6E-06 32.9 1.2 28 16-52 3-30 (30)
35 PF09889 DUF2116: Uncharacteri 83.9 1 2.3E-05 34.5 2.7 33 29-63 5-37 (59)
36 PF13824 zf-Mss51: Zinc-finger 77.1 4.1 9E-05 30.8 3.9 38 20-64 3-44 (55)
37 KOG3612 PHD Zn-finger protein 69.6 1.5 3.1E-05 47.8 -0.1 41 16-66 528-568 (588)
38 KOG2857 Predicted MYND Zn-fing 68.6 2.5 5.5E-05 37.9 1.2 30 15-53 5-35 (157)
39 PRK00418 DNA gyrase inhibitor; 65.3 4.1 8.9E-05 31.6 1.6 28 26-53 5-35 (62)
40 PRK01343 zinc-binding protein; 63.8 4.1 8.8E-05 31.1 1.3 26 27-53 9-34 (57)
41 PF03884 DUF329: Domain of unk 57.0 3.9 8.4E-05 31.2 0.2 26 27-52 2-30 (57)
42 COG3350 Uncharacterized conser 45.7 12 0.00026 28.0 1.2 11 43-53 28-38 (53)
43 PF06467 zf-FCS: MYM-type Zinc 44.4 14 0.0003 25.9 1.4 12 42-53 31-42 (43)
44 PF02069 Metallothio_Pro: Prok 44.4 12 0.00026 27.9 1.1 19 35-53 20-38 (52)
45 COG3024 Uncharacterized protei 40.4 15 0.00033 28.5 1.2 26 27-52 7-35 (65)
46 COG4306 Uncharacterized protei 32.0 12 0.00026 33.0 -0.7 17 17-34 30-46 (160)
47 KOG0808 Carbon-nitrogen hydrol 30.6 46 0.001 33.3 3.0 26 236-261 99-124 (387)
48 COG4068 Uncharacterized protei 29.0 23 0.00051 27.0 0.5 30 28-59 9-38 (64)
49 PHA02546 47 endonuclease subun 26.5 1.1E+02 0.0025 31.9 5.4 50 370-419 3-52 (340)
50 cd00840 MPP_Mre11_N Mre11 nucl 26.4 1E+02 0.0023 29.3 4.8 51 370-420 2-55 (223)
51 PF04181 RPAP2_Rtr1: Rtr1/RPAP 24.6 38 0.00083 27.4 1.1 12 43-54 59-70 (79)
52 PLN03191 Type I inositol-1,4,5 24.5 68 0.0015 36.2 3.3 16 537-552 577-592 (621)
53 PF04945 YHS: YHS domain; Int 24.1 36 0.00079 24.5 0.8 11 43-53 25-35 (47)
54 cd07393 MPP_DR1119 Deinococcus 23.7 1.3E+02 0.0027 29.6 4.9 48 371-419 2-54 (232)
55 PTZ00235 DNA polymerase epsilo 22.3 1.7E+02 0.0036 30.1 5.3 48 367-420 27-77 (291)
56 KOG0565 Inositol polyphosphate 22.2 1.1E+02 0.0025 27.5 3.9 54 368-421 58-122 (145)
57 PF05502 Dynactin_p62: Dynacti 21.7 41 0.00089 37.1 1.0 25 17-48 7-31 (483)
58 TIGR00024 SbcD_rel_arch putati 20.1 95 0.0021 30.6 3.1 50 369-418 16-70 (225)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=2.1e-125 Score=1025.38 Aligned_cols=551 Identities=84% Similarity=1.338 Sum_probs=507.6
Q ss_pred eeeeeccCCcccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHHhhhcccccCCCchhhhccCCC
Q 008666 5 IRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFN 84 (557)
Q Consensus 5 ~~~~~~~~~~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~ 84 (557)
+|||+|+++++++|++|++++|+||||+|+|+|+++..||||||+|||++|++||.+|+.|+.+.+|+++|+++++++++
T Consensus 52 ~w~r~~~~~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~ 131 (606)
T PLN03144 52 RWYRIQSDRKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENGNEEDELFGRFN 131 (606)
T ss_pred EEEecCCCccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhhhhhcccCccccccccccC
Confidence 79999999999999999999999999999999998889999999999999999999999998888999999999999999
Q ss_pred CCCCcccccccCCCCCCCCCcCCCCcccccccccCC---CCceEEeccceeecCCccCCCceEEEEEEEeeCCcCCCCCC
Q 008666 85 STGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSG---GETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGH 161 (557)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~v~~~~~y~P~~~d~g~~l~~~~~~~~~~~~~~~g~ 161 (557)
++|||....+++|+.++.+++|||+++||+++.+.. +++|++||++++|||+++|||+.|||||+|+++....+.|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~ 211 (606)
T PLN03144 132 SSGSGVLSTSDSGSASSASLTNGSVPLYPSGIEQKTQVGGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGH 211 (606)
T ss_pred CCccccccccccccccccccccCcccccccccccccCCCCCceEEeCCCccccCChhhCCceEEEEEEEcccccCCCCcc
Confidence 999999988888888888899999999999988777 89999999999999999999999999999999998788898
Q ss_pred cceeeeccccCCCCCCCCceeeeCCCCCCcCcccCCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHH
Q 008666 162 PNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQN 241 (557)
Q Consensus 162 ~~~~~~~~~~p~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~ 241 (557)
+.+++|.+|+|+|.|++|+|++++. .+.++|++.+.+..+..+|||||||||++.|++.++|+|||+++++|+||+++
T Consensus 212 ~~~~~t~~v~~~p~p~~R~~~~~~~--~~~~~~~~~~~~~~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~l 289 (606)
T PLN03144 212 PQSILTSRVIPAPSPTPRRLIQVNG--LDGMGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQN 289 (606)
T ss_pred ceeecccceecCCCCCCcceEEecc--cccccccccccccCCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHH
Confidence 9999999999999999999999876 34566777777778889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechh
Q 008666 242 LLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 321 (557)
Q Consensus 242 i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~ 321 (557)
|+++|..++|||||||||+.++|.++|.+.|.++||.++|..|++.++.++....||||||||++||++++.+.|+|+..
T Consensus 290 Il~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~ 369 (606)
T PLN03144 290 LLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKA 369 (606)
T ss_pred HHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccch
Confidence 99999999999999999999999999999999999999999987766555566789999999999999999999999999
Q ss_pred hcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHH
Q 008666 322 AQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK 401 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~ 401 (557)
++++++...++.++.++++|++++|||++++|+.+.........+.++.|+|+||||+|+|.+.++|+.|+..|++.|++
T Consensus 370 ~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~ 449 (606)
T PLN03144 370 AQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEK 449 (606)
T ss_pred hhccCccccccccchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHH
Confidence 98888777666667889999999999999999997543222222345689999999999999999999999999999999
Q ss_pred HhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhh-hccCCcccccc
Q 008666 402 IAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR-IGVGLGMEHQR 480 (557)
Q Consensus 402 ~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~-~~~~~g~~~~~ 480 (557)
+....++|+|||||||+.|+|++|++|++|.++.+|+||..++++.+.+..++.|+|+|.|||..+.+ .|.+.+++.+.
T Consensus 450 ~~~~~~~PvIlcGDFNS~P~S~vy~lLt~G~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~ 529 (606)
T PLN03144 450 IAASADIPMLVCGDFNSVPGSAPHCLLATGKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQR 529 (606)
T ss_pred HhhcCCCceEEeccCCCCCCChhhhhhhcCCcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhh
Confidence 87666899999999999999999999999999999999999999888767899999999999998754 33445678889
Q ss_pred ccCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEEeccCCC
Q 008666 481 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR 557 (557)
Q Consensus 481 ~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~~~~~~ 557 (557)
.++|+.+++|.||||+++|.++||||||+.+.|.+.+++++++++++.+..||||..+||||+||+|+|+|+++.||
T Consensus 530 ~r~~~~~geP~fTNyt~~F~gtlDYIfys~~~L~v~~vL~lp~e~~l~~~~gLPn~~~PSDHI~L~AeF~~~~~~~~ 606 (606)
T PLN03144 530 RRMDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRTRR 606 (606)
T ss_pred hccccccCCCCceeecCCcceeEEEEEEcCCCceEEeecCCCCHHHhcccCCCCCCCCCCccccEeEEEEeccCCCC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999876
No 2
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=100.00 E-value=1.7e-51 Score=409.83 Aligned_cols=312 Identities=34% Similarity=0.562 Sum_probs=255.5
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecC
Q 008666 206 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 285 (557)
Q Consensus 206 ~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~ 285 (557)
+|+|||||+||+.|+++++|+|. +|+++|.||+++|++||..|+|||||||||+...|.+||++.|...||.++|.+++
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~ 108 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKE 108 (378)
T ss_pred eeEEEehhhhhhhhccccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCC
Confidence 79999999999999999999999 99999999999999999999999999999999999999999999999999999998
Q ss_pred Cc-ccCCCC--CCccceEeeeec----cceeeeEeEEEEechhhcccccccCchhhhhhhhhhcc-cCcEE---EEEEEe
Q 008666 286 NE-VYNGNP--HTIDGCATFFRR----DRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVA---LIVVLE 354 (557)
Q Consensus 286 ~~-~~~~~~--~~~~G~Aif~r~----srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~-~~~va---l~~~Le 354 (557)
+. -++... ...+||+|||++ +|+.++-.....|....... + ...+....++|++ +++++ +++-+.
T Consensus 109 ~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~-e---r~r~t~~~lnri~e~~~~~w~~l~~~l~ 184 (378)
T COG5239 109 RKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYY-E---RFRQTYILLNRIGEKDNIAWVCLFVGLF 184 (378)
T ss_pred CcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceee-h---hhhHHHHHHHHHhhhhhcchhheeeeec
Confidence 73 222222 378999999999 55444433322222211110 0 0123356788888 67888 666666
Q ss_pred eeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcC--------------CCCEEEEccCCCCC
Q 008666 355 AKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA--------------DIPMLVCGDFNSVP 420 (557)
Q Consensus 355 ~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~--------------~~pvIl~GDFNs~p 420 (557)
.+ .++.+++|+|||++|+|...++++.|..++++++++...+. ..++++||||||..
T Consensus 185 n~---------e~gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~ 255 (378)
T COG5239 185 NK---------EPGDTPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLR 255 (378)
T ss_pred cC---------CCCCceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCcccee
Confidence 53 35778999999999999999999999999999999876432 13789999999999
Q ss_pred CChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCcc
Q 008666 421 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFI 500 (557)
Q Consensus 421 ~s~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~~f~ 500 (557)
.|.+|.+|.++.+ ..|.++..+.++.+..+-+..|++.+.|.+ ..+++.||||+++|.
T Consensus 256 ~s~vy~~l~~~~~-q~H~~~~~~~~~lysvg~~~~h~~n~~~~~---------------------~~~~~~fTN~t~~~k 313 (378)
T COG5239 256 ASLVYKFLVTSQI-QLHESLNGRDFSLYSVGYKFVHPENLKSDN---------------------SKGELGFTNWTPGFK 313 (378)
T ss_pred cceehhhhhhHHH-HhhhcccccchhhhcccccccChhhcccCC---------------------CcCCccccccccccc
Confidence 9999999998543 468878777777776666777877766632 257899999999999
Q ss_pred cceeEEEeeCC-CcceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEEec
Q 008666 501 GTLDYIFYTAD-SLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP 553 (557)
Q Consensus 501 ~~LDyIf~s~~-~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~~ 553 (557)
|.||||||... .+.+...+..++.++..+..|+|+..+||||+|+.++|.++.
T Consensus 314 G~iDYIfy~~~~~~~~~~~l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~~~~ 367 (378)
T COG5239 314 GVIDYIFYHGGLLTRQTGLLGVVEGEYASKVIGLPNMPFPSDHIPLLAEFASDH 367 (378)
T ss_pred ceeEEEEEecCcceeeeccccccccchhhhhcccCCCCCccccccchhcccccc
Confidence 99999999988 678888899999899999999999999999999999998854
No 3
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=100.00 E-value=6.4e-49 Score=406.46 Aligned_cols=330 Identities=47% Similarity=0.701 Sum_probs=263.8
Q ss_pred CCCceeeeCCCCCCcCcccCCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEE
Q 008666 177 SPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCL 256 (557)
Q Consensus 177 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcL 256 (557)
..|.++.+... .......++|+|||||++.|+....|.|||.|++.|.||++.|+++|..++||||||
T Consensus 2 ~~~~~~~~~~~------------~~~~~~~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icL 69 (361)
T KOG0620|consen 2 FWRDLISVSGK------------DVPQGETFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCL 69 (361)
T ss_pred ChhheeeccCC------------CccCCceEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeec
Confidence 35677776641 112334999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhHHHHhHHHHhhCCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhh
Q 008666 257 QEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKK 336 (557)
Q Consensus 257 QEV~~~~~~~~l~~~L~~~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (557)
||| +.|.+++.+.|...||.+.+.+|++ ++.......+|||||||+++|+++....++|++.+..+.+. ..
T Consensus 70 qev--~~~~~~~~p~l~~~gY~g~~~~k~~-~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~------~~ 140 (361)
T KOG0620|consen 70 QEV--DRYHDFFSPELEASGYSGIFIEKTR-MGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPP------NI 140 (361)
T ss_pred chh--hHHHHHccchhhhcCCcceeecccc-cchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcch------hH
Confidence 999 7899999999999999999999987 55556677899999999999999999999999887654221 12
Q ss_pred hhhhhcc-cCcEEE-EEEEeeeecCCCCCCCCCcceEE--EEEeccccCcCCcccHHHHHHHHHHHHH-------HHh--
Q 008666 337 NALNRLV-KDNVAL-IVVLEAKFSNQGADTPGKRQLLC--VANTHVNVHQELKDVKLWQVHTLLKGLE-------KIA-- 403 (557)
Q Consensus 337 ~~~~R~~-~~~val-~~~Le~k~~~~~~~~~~~~~~l~--V~NTHL~~~p~~~~vR~~Q~~~L~~~l~-------~~~-- 403 (557)
...+|.+ +|+++. +..|+.... ....++ ++|+|+.|.+...++|+.|+..++..++ +..
T Consensus 141 ~~~~~~~~~d~~~~~l~~L~~~~~--------~~~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~ 212 (361)
T KOG0620|consen 141 AQLNRLTTLDNSGNKLVSLKAELG--------NMVSLPHLLLNTHILWDLPYEDVKLFQVLTLLLELAPLSPEILKIYRE 212 (361)
T ss_pred HHHHhhhccccccchhhhhhhhcC--------CceeeccccccceeccCCCccchHHHHHHHHhhcccccchhhhhhhcc
Confidence 3455665 677766 455555321 111111 5899999999999999999999998843 111
Q ss_pred -----hcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCC------CCCcccCCCCcchhhhhhhhcc
Q 008666 404 -----ASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRP------HTKLTHQLPLVSAYSSFARIGV 472 (557)
Q Consensus 404 -----~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~~~~~~------~~~l~~~~~l~Say~~~~~~~~ 472 (557)
.....|+++|||||++|.+++|.++..|.+.+.|.||...++..-.. ...+.|.+.++++
T Consensus 213 ~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 283 (361)
T KOG0620|consen 213 GNLATRIASFPLLLCGDFNSTPLSPVYALLASGILSPEDADNKDLPLMSALGSKVNKSYEEMSHDQRRKLE--------- 283 (361)
T ss_pred ccccccccccceeeeccccCCCCccceeecccCCCCcchhhHhhccccccccccccccccccchhhhcccc---------
Confidence 11258999999999999999999999999999998887544322110 0113333333333
Q ss_pred CCccccccccCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCCh-hhhccCCCCCCCCCCCCcceeeEEEEE
Q 008666 473 GLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDE-DSLRKDTALPSPEWSSDHIALLAEFRC 551 (557)
Q Consensus 473 ~~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~-~~~~~~~~lP~~~~pSDH~pl~aef~~ 551 (557)
..++++.|||++++|.|+||||||+++.+.+..+++.+++ +.+.+++++||.++||||+||+|+|++
T Consensus 284 ------------~~~~~~~ftn~t~~F~g~~DYIfys~~~~~~~~~L~~~~e~~~~~~~~~lPs~~~pSDHi~L~~ef~~ 351 (361)
T KOG0620|consen 284 ------------YTTGEPRFTNYTPGFKGTLDYIFYSKAALIVESALELLDEDELVIKVTGLPSPHHPSDHIPLLAEFEI 351 (361)
T ss_pred ------------cccCccccccccCCccceeeEEEEccccccccccccCCChhhhhcccccCCCCCCCCccchhhccccc
Confidence 3467888999999999999999999999999999999994 888999999999999999999999999
Q ss_pred eccCC
Q 008666 552 KPRAR 556 (557)
Q Consensus 552 ~~~~~ 556 (557)
.+.++
T Consensus 352 ~~~~~ 356 (361)
T KOG0620|consen 352 APPKD 356 (361)
T ss_pred cCccc
Confidence 87654
No 4
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=1.6e-45 Score=381.54 Aligned_cols=316 Identities=33% Similarity=0.527 Sum_probs=242.2
Q ss_pred CcEEEEEeccCCCcC---CCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEE
Q 008666 205 GTFSVLSYNILSDVY---ATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 281 (557)
Q Consensus 205 ~~~rV~SyNIl~~~y---a~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~ 281 (557)
-.|+||||||||+.+ ..+..|+ |+..+|+|.+|.+.|+.||..++|||||||||+.+++.+++.+.+..+||.++|
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~-~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~ 193 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFP-ESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFF 193 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhcc-CChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEE
Confidence 589999999999988 3455677 999999999999999999999999999999999999999999999999999988
Q ss_pred EecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCC
Q 008666 282 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 361 (557)
Q Consensus 282 ~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~ 361 (557)
..+++. +.+||||+|+.++|+++....+.|... ...+.-++||++++.|+.++...
T Consensus 194 ~r~t~~-------KthG~ai~w~~~~F~lv~~~~l~y~~~----------------~~~l~n~~NV~lvv~l~f~~~~~- 249 (495)
T KOG2338|consen 194 KRRTGT-------KTHGVAILWHSAKFKLVNHSELNYFDS----------------GSALANRDNVGLVVSLEFRLVDE- 249 (495)
T ss_pred EeccCC-------CCceEEEEEecccceecccchhhcccc----------------cchhhcccceeEEEEEEecccCc-
Confidence 887653 568999999999999999999887621 01122358999999999875321
Q ss_pred CCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcC--CCCEEEEccCCCCCCChhhhhhhcCCCCCCCCC
Q 008666 362 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA--DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPD 439 (557)
Q Consensus 362 ~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~--~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d 439 (557)
..+.|+|+||||.|+|...++|+.|...|++.|+++.... ..|+|+|||||+.|++++|.+|+.+.+......
T Consensus 250 -----~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~ 324 (495)
T KOG2338|consen 250 -----SSQGILVANTHLLFNPSRSDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRA 324 (495)
T ss_pred -----ccCceEEEeeeeeecCcccchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCCcchhhhcCCceecccc
Confidence 2458999999999999999999999999999999997644 579999999999999999999998876533211
Q ss_pred CC---------CC--C---CCC----------------CCCCCCcccCCCCcch--------hhhhhhh-------ccCC
Q 008666 440 LA---------VD--P---LTI----------------LRPHTKLTHQLPLVSA--------YSSFARI-------GVGL 474 (557)
Q Consensus 440 ~~---------~~--~---~~~----------------~~~~~~l~~~~~l~Sa--------y~~~~~~-------~~~~ 474 (557)
-. .. . .|. ..+...-...|..... |..+... +.|.
T Consensus 325 ~~~~e~s~~~~~~~~~~ge~g~d~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~~~~~~~~h~~~~~~~s~~s~g~ 404 (495)
T KOG2338|consen 325 AHTIEDSHRYVFSESRLGEEGEDDEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHLVELTYSEHESLKVNVSLYSHGY 404 (495)
T ss_pred cccccccccccccccccCcccccchhhhhhhccCccccccccCCCccccccccccchhHHHHHHHhhhhhcccceeeccc
Confidence 10 00 0 000 0000000000100001 1100000 1222
Q ss_pred ccccccccCCCCCCCCccccccCCcccceeEEEeeCC-------------CcceeeecccCChhhhccCCCCCCCCCCCC
Q 008666 475 GMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAD-------------SLSVESLLELLDEDSLRKDTALPSPEWSSD 541 (557)
Q Consensus 475 g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~-------------~l~v~~~~~~~~~~~~~~~~~lP~~~~pSD 541 (557)
|+....-.. ...|+|.+|||...+.|.+||||+++. .+++...+.+|.+..+.++...|++.++||
T Consensus 405 ~~~~~~~~~-~~~gep~vt~~~~~~~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SD 483 (495)
T KOG2338|consen 405 GLVHTENAW-LDRGEPGVTNYALTWKGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSD 483 (495)
T ss_pred cccchhhcc-ccCCCcceecHHhhhccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCccc
Confidence 322221111 146799999999999999999999988 788899999999999989999999999999
Q ss_pred cceeeEEEEE
Q 008666 542 HIALLAEFRC 551 (557)
Q Consensus 542 H~pl~aef~~ 551 (557)
|++|+|+|.+
T Consensus 484 H~aL~~~~~~ 493 (495)
T KOG2338|consen 484 HIALVAQFSL 493 (495)
T ss_pred ceEeeEeeEe
Confidence 9999999987
No 5
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.94 E-value=2.6e-25 Score=226.10 Aligned_cols=186 Identities=17% Similarity=0.151 Sum_probs=124.1
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHh-hCCCeEEEEecC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKRKT 285 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~gY~~~~~~k~ 285 (557)
|+||||||....+. -.+...|+.|.++|.+.+...++||||||||......+.|...|+ .++|...+....
T Consensus 1 lkVmtyNv~~l~~~--------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~ 72 (283)
T TIGR03395 1 IKILSHNVYMLSTN--------LYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRS 72 (283)
T ss_pred CeEEEEEeeeeccc--------ccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccc
Confidence 68999999852211 112346899999999999999999999999987766555566674 466654332221
Q ss_pred Ccc-------cCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeec
Q 008666 286 NEV-------YNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 358 (557)
Q Consensus 286 ~~~-------~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~ 358 (557)
... +........|++|+ |||++++.....|....- .+....| -++.+.++.
T Consensus 73 ~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~-----------~d~~~~k-----g~l~a~i~~--- 130 (283)
T TIGR03395 73 KKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCG-----------ADNLSNK-----GFAYVKINK--- 130 (283)
T ss_pred cccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCC-----------CccccCC-----ceEEEEEec---
Confidence 100 11112345699999 999998877665542110 0001112 134444432
Q ss_pred CCCCCCCCCcceEEEEEeccccCcC------CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhc
Q 008666 359 NQGADTPGKRQLLCVANTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 430 (557)
Q Consensus 359 ~~~~~~~~~~~~l~V~NTHL~~~p~------~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~ 430 (557)
.++.|.|+||||.+... ...+|..|+..|.++|++.....+.|+|||||||..|++..|+.|..
T Consensus 131 --------~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~ml~ 200 (283)
T TIGR03395 131 --------NGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSNEYHDMFK 200 (283)
T ss_pred --------CCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCHHHHHHHH
Confidence 35789999999976421 24689999999999887543234678999999999999999987753
No 6
>PRK11756 exonuclease III; Provisional
Probab=99.92 E-value=3e-24 Score=217.32 Aligned_cols=254 Identities=21% Similarity=0.230 Sum_probs=144.2
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
||||||||.. +..|.+.|++.|...+||||||||+.... ..+....+...||..++..+.
T Consensus 1 mri~T~Nv~g------------------~~~~~~~i~~~i~~~~pDIi~LQE~~~~~-~~~~~~~~~~~gy~~~~~~~~- 60 (268)
T PRK11756 1 MKFVSFNING------------------LRARPHQLEAIIEKHQPDVIGLQETKVHD-EMFPLEEVEALGYHVFYHGQK- 60 (268)
T ss_pred CEEEEEEcCC------------------HHHHHHHHHHHHHhcCCCEEEEEeccccc-ccCCHHHHHhcCCEEEEeCCC-
Confidence 6899999984 34566789999999999999999985321 111122345679987765432
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
...|+||+ +|++++.... .+. .. ......| ++.+.++..
T Consensus 61 --------~~~Gvail---Sr~p~~~~~~-~~~------------~~-~~~~~~r------~l~~~i~~~---------- 99 (268)
T PRK11756 61 --------GHYGVALL---SKQTPIAVRK-GFP------------TD-DEEAQRR------IIMATIPTP---------- 99 (268)
T ss_pred --------CCCEEEEE---ECCChHHeEE-CCC------------Cc-cccccCC------EEEEEEEcC----------
Confidence 23599999 5555543321 110 00 0000112 344555431
Q ss_pred CcceEEEEEeccccCcCC-----cccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCC
Q 008666 367 KRQLLCVANTHVNVHQEL-----KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLA 441 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~~-----~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~ 441 (557)
.+ .+.|+|+|+...... ...|..|+..|.+.|.+.. ..+.|+|+|||||..|.+.-. .++.+.
T Consensus 100 ~g-~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~-~~~~pvIl~GDfN~~~~~~D~----------~~~~~~ 167 (268)
T PRK11756 100 NG-NLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETEL-SPDNPLLIMGDMNISPTDLDI----------GIGEEN 167 (268)
T ss_pred CC-CEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHh-ccCCCEEEEeecccCCChhhc----------CCcccC
Confidence 22 389999999543321 1256778888888887763 345799999999998863211 111110
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccccc-------CCcccceeEEEeeCCCcc
Q 008666 442 VDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCT-------RDFIGTLDYIFYTADSLS 514 (557)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t-------~~f~~~LDyIf~s~~~l~ 514 (557)
....+.. +.. .+. ....+.+..+ ...|+.|.+|.+++. ..+.||+|. .+...||||||+++. +.
T Consensus 168 --~~~~~~~--~~~-~~~-~~er~~~~~l-~~~~l~D~~R~~~p~-~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~-~~ 238 (268)
T PRK11756 168 --RKRWLRT--GKC-SFL-PEEREWLDRL-MDWGLVDTFRQLNPD-VNDRFSWFDYRSKGFDDNRGLRIDLILATQP-LA 238 (268)
T ss_pred --hHHhccc--CCc-cCC-HHHHHHHHHH-HhCCcEeehhhhCCC-CCCcccCcCCcccccccCCceEEEEEEeCHH-HH
Confidence 0000000 000 000 0111122222 344677888888765 235678762 134679999999987 43
Q ss_pred --eeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEE
Q 008666 515 --VESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 551 (557)
Q Consensus 515 --v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~ 551 (557)
+.... +.. +. ....+||||.||+++|++
T Consensus 239 ~~v~~~~-i~~-~~-------~~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 239 ERCVETG-IDY-DI-------RGMEKPSDHAPIWATFKL 268 (268)
T ss_pred hhheEeE-EeH-HH-------hCCCCCCCcccEEEEEeC
Confidence 33332 111 11 124579999999999974
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=205.78 Aligned_cols=241 Identities=27% Similarity=0.317 Sum_probs=147.0
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhh------HHHHhHHHH-hhCCCe
Q 008666 206 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH------FEEFFAPEL-DKHGYQ 278 (557)
Q Consensus 206 ~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~------~~~~l~~~L-~~~gY~ 278 (557)
.++|+||||..+.- ..++.++.+.+.+.|....+||||||||+... +.+. ...+ ...+..
T Consensus 9 ~~~v~TyNih~~~~------------~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~-~~~~~~~~~~~ 75 (259)
T COG3568 9 RFKVLTYNIHKGFG------------AFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDL-PHLLGRLGLAP 75 (259)
T ss_pred eeEEEEEEEEEccC------------ccCceecHHHHHHHHHhhccCeeeeecccccccccccccchh-HHHHHHhcCCc
Confidence 38999999995431 11466778999999999999999999998621 2222 1111 122322
Q ss_pred EEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeec
Q 008666 279 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 358 (557)
Q Consensus 279 ~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~ 358 (557)
..+..-... ....-..+|+||+ ++.++.......+... ..+..+.++++.++..
T Consensus 76 ~~~~~~~~~--a~~~~~~~GnaiL---S~~pi~~v~~~~lp~~-------------------~~~~~Rgal~a~~~~~-- 129 (259)
T COG3568 76 YWWSGAAFG--AVYGEGQHGNAIL---SRLPIRDVENLALPDP-------------------TGLEPRGALLAEIELP-- 129 (259)
T ss_pred cccchhhhh--hhcccceeeeEEE---ecCcccchhhccCCCC-------------------CCCCCceeEEEEEEcC--
Confidence 222211000 0112256899999 5666655443322110 0112234788888761
Q ss_pred CCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCC
Q 008666 359 NQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHP 438 (557)
Q Consensus 359 ~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~ 438 (557)
.++.|.|+|+||.+.. ..|+.|+..|++.+. +.. ..|+|+|||||+.|+|+.|+++..-..+.
T Consensus 130 --------~g~~l~V~~~HL~l~~---~~R~~Q~~~L~~~~~-l~~--~~p~vl~GDFN~~p~s~~yr~~~~~~~~~--- 192 (259)
T COG3568 130 --------GGKPLRVINAHLGLSE---ESRLRQAAALLALAG-LPA--LNPTVLMGDFNNEPGSAEYRLAARSPLNA--- 192 (259)
T ss_pred --------CCCEEEEEEEeccccH---HHHHHHHHHHHhhcc-Ccc--cCceEEEccCCCCCCCccceeccCCchhh---
Confidence 3678999999998654 679999999988322 111 23999999999999999997654321110
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCC--CCccccccCCcccceeEEEeeCCCccee
Q 008666 439 DLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTN--EPLFTHCTRDFIGTLDYIFYTADSLSVE 516 (557)
Q Consensus 439 d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~--~p~fTn~t~~f~~~LDyIf~s~~~l~v~ 516 (557)
...+..+... ..+ ..+|..+++-. +|||||++++ +.+.
T Consensus 193 ------------------~~~~~~~~~~-------------------a~~~~~~tfps~~p~l--riD~Ifvs~~-~~i~ 232 (259)
T COG3568 193 ------------------QAALTGAFAP-------------------AVGRTIRTFPSNTPLL--RLDRIFVSKE-LAIR 232 (259)
T ss_pred ------------------ccccccccCc-------------------ccCcccCCCCCCCccc--cccEEEecCc-ccEE
Confidence 0000111100 011 23566665543 9999999987 7776
Q ss_pred eecccCChhhhccCCCCCCCCCCCCcceeeEEEEEe
Q 008666 517 SLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCK 552 (557)
Q Consensus 517 ~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~ 552 (557)
++....+. .....|||+||.|+++++
T Consensus 233 ~~~v~~~~----------~a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 233 SVHVLTDR----------LARVASDHLPLLAELRLK 258 (259)
T ss_pred EEEeecCC----------CccccccccceEEEEecC
Confidence 66444431 134589999999999986
No 8
>PRK05421 hypothetical protein; Provisional
Probab=99.89 E-value=3.9e-22 Score=201.24 Aligned_cols=157 Identities=22% Similarity=0.204 Sum_probs=96.1
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 282 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~ 282 (557)
.+++||||||||+...-. +....++.| ..+|||||||||+.... +...+...|+...|.
T Consensus 40 ~~~~lri~t~NI~~~~~~-----------------~~~~~l~~l-~~~~DiI~LQEv~~~~~---~~~~~~~~~~~~~~~ 98 (263)
T PRK05421 40 TEERLRLLVWNIYKQQRA-----------------GWLSVLKNL-GKDADLVLLQEAQTTPE---LVQFATANYLAADQA 98 (263)
T ss_pred cCCceeEEEEEccccccc-----------------cHHHHHHHh-ccCCCEEEEEecccCcc---hHHHhhcccchHHhc
Confidence 457899999999964311 123455555 89999999999976432 122233344443332
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
..... .....|+||+ ||+++.....+.... + .......++++.++..
T Consensus 99 ~~~~~-----~~~~~GvaiL---SR~pi~~~~~~~~~~----------~---------~~~~~r~~l~a~~~~~------ 145 (263)
T PRK05421 99 PAFVL-----PQHPSGVMTL---SKAHPVYCCPLRERE----------P---------WLRLPKSALITEYPLP------ 145 (263)
T ss_pred ccccc-----CCCccceeEe---eecccceeeccCCCC----------c---------cccCcceeEEEEEEeC------
Confidence 21110 1123599999 888887654331100 0 0001234577777651
Q ss_pred CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCC
Q 008666 363 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 421 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~ 421 (557)
.++.|.|+||||.+.......|..|+..|.+.+... +.|+|+|||||+.+.
T Consensus 146 ----~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~~~~----~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 146 ----NGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQIAHH----SGPVILAGDFNTWSR 196 (263)
T ss_pred ----CCCEEEEEEECccccCcChHHHHHHHHHHHHHHHhC----CCCEEEEcccccCcc
Confidence 356799999999543222456888998888777543 469999999998664
No 9
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.8e-21 Score=191.65 Aligned_cols=247 Identities=22% Similarity=0.327 Sum_probs=143.8
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
|||+||||.. ...|...+++.|..++||||||||+-... ..|-...++..||++++....
T Consensus 1 mkI~SwNVNg------------------iRar~~~~~~~l~~~~pDVlclQEtK~~~-~~fp~~~~~~~GY~~~~~~gq- 60 (261)
T COG0708 1 MKIASWNVNG------------------LRARLKKLLDWLEEEQPDVLCLQETKAQD-EQFPREELEALGYHHVFNHGQ- 60 (261)
T ss_pred CeeEEEehhh------------------HHHHHHHHHHHHHHhCCCEEEEEecccCc-ccCCHhHHhhCCceEEEecCc-
Confidence 6899999995 34677889999999999999999995421 223345566789966554322
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
. ...||||+.|. ++.+.. ..|. .....+...|+ +.+.+.
T Consensus 61 K-------gysGVailsr~---~~~~v~-~g~~------------~~~~~d~e~R~------I~a~~~------------ 99 (261)
T COG0708 61 K-------GYSGVAILSKK---PPDDVR-RGFP------------GEEEDDEEGRV------IEAEFD------------ 99 (261)
T ss_pred C-------CcceEEEEEcc---Cchhhh-cCCC------------CCccccccCcE------EEEEEC------------
Confidence 2 23599999554 333111 1111 00001122343 222222
Q ss_pred CcceEEEEEeccccCcC----CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCC--CC
Q 008666 367 KRQLLCVANTHVNVHQE----LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHP--DL 440 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~----~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~--d~ 440 (557)
+ |.|+|.-+..... ..+.|+.-...+...+++... .+.|+|+|||||..|.. +|...+ .|
T Consensus 100 -~--~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~-~~~~~vl~GD~NIap~~----------iDv~~~~~~~ 165 (261)
T COG0708 100 -G--FRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELLK-KGKPVVLCGDFNIAPEE----------IDVANPKKRW 165 (261)
T ss_pred -C--EEEEEEEcCCCCCCCCcchHHHHHHHHHHHHHHHHHhh-cCCCEEEecccccCCch----------hcccCchhhh
Confidence 1 6777776533321 123466666667777777653 35899999999988762 222222 12
Q ss_pred C-CCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccccc-------CCcccceeEEEeeCCC
Q 008666 441 A-VDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCT-------RDFIGTLDYIFYTADS 512 (557)
Q Consensus 441 ~-~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t-------~~f~~~LDyIf~s~~~ 512 (557)
. .+..+ -+....+.+..+ .+.|+.|.+|.+.+..+. ||+|. .+.+.|||||+.|+.
T Consensus 166 ~n~~~~~------------f~~eeR~~~~~l-l~~G~~D~~R~~~p~~~~--YTwW~YR~~~~~~n~G~RID~~l~S~~- 229 (261)
T COG0708 166 LNEGNSG------------FLPEERAWFRRL-LNAGFVDTFRLFHPEPEK--YTWWDYRANAARRNRGWRIDYILVSPA- 229 (261)
T ss_pred hcCCCCC------------CCHHHHHHHHHH-HHcchhhhhHhhCCCCCc--ccccccccchhhhcCceeEEEEEeCHH-
Confidence 1 11111 111122333333 677899999999887555 99983 234569999999987
Q ss_pred cceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEE
Q 008666 513 LSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 551 (557)
Q Consensus 513 l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~ 551 (557)
|...-....++ .+++. ...||||.||+++|++
T Consensus 230 L~~~~~~a~I~-~~~rg------~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 230 LADRLKDAGID-REVRG------WEKPSDHAPVWVELDL 261 (261)
T ss_pred HHHHHHhcCcc-HHHhc------CCCCCCcCcEEEEecC
Confidence 43211111111 11211 3468999999999974
No 10
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.85 E-value=1.2e-20 Score=189.34 Aligned_cols=241 Identities=22% Similarity=0.325 Sum_probs=132.2
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
|||+||||... ..+.+.+++.|...+||||||||+.... ..+....+...||..++....
T Consensus 1 mri~t~Ni~g~------------------~~~~~~~~~~l~~~~~DIi~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~- 60 (254)
T TIGR00195 1 MKIISWNVNGL------------------RARLHKGLAWLKENQPDVLCLQETKVQD-EQFPLEPFHKEGYHVFFSGQK- 60 (254)
T ss_pred CEEEEEEcCcH------------------HHhHHHHHHHHHhcCCCEEEEEecccch-hhCCHHHhhcCCcEEEEecCC-
Confidence 69999999842 2234558999999999999999996542 122233345679977665431
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
...|+||++|...+.+.. .+... . .+...|+ +.+ +.
T Consensus 61 --------g~~Gvailsr~~~~~~~~----~~~~~-----~--------~~~~~r~------i~~--~~----------- 96 (254)
T TIGR00195 61 --------GYSGVAIFSKEEPLSVRR----GFGVE-----E--------EDAEGRI------IMA--EF----------- 96 (254)
T ss_pred --------CcceEEEEEcCCcceEEE----CCCCc-----c--------cccCCCE------EEE--EE-----------
Confidence 235999997754332211 01000 0 0001121 222 22
Q ss_pred CcceEEEEEeccccCcC----CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCC
Q 008666 367 KRQLLCVANTHVNVHQE----LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAV 442 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~----~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~ 442 (557)
+.+.|+|||+..... ....|..+...|.+.+.++.. .+.|+|+|||||..+...-. ..+.....+.
T Consensus 97 --~~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~-~~~pvIi~GDfN~~~~~~d~---~~~~~~~~~~---- 166 (254)
T TIGR00195 97 --DSFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLEKLVD-KDKPVLICGDMNIAPTEIDL---HSPDENRNHT---- 166 (254)
T ss_pred --CCEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHh-cCCcEEEEeecccCCChhhc---cChhhcCCCc----
Confidence 127899999965321 123477778888888877642 35799999999998864110 0000000000
Q ss_pred CCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC-------CcccceeEEEeeCCCcc-
Q 008666 443 DPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR-------DFIGTLDYIFYTADSLS- 514 (557)
Q Consensus 443 ~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~-------~f~~~LDyIf~s~~~l~- 514 (557)
+ +.+ .....+..+ ...|+.+..+...+. ...||+|.. +...+|||||++++ +.
T Consensus 167 ---~-~~~--------~e~~~~~~l----~~~~l~D~~r~~~~~--~~~~T~~~~~~~~~~~~~g~RID~i~~s~~-~~~ 227 (254)
T TIGR00195 167 ---G-FLP--------EEREWLDRL----LEAGLVDTFRKFNPD--EGAYSWWDYRTKARDRNRGWRIDYFLVSEP-LKE 227 (254)
T ss_pred ---C-cCh--------HHHHHHHHH----HHcCCEeeecccCCC--CCCCcccCCcCCccccCCceEEEEEEECHH-HHh
Confidence 0 000 000112221 123566666655554 346777631 23459999999987 44
Q ss_pred -eeeecccCChhhhccCCCCCCCCCCCCcceeeEEE
Q 008666 515 -VESLLELLDEDSLRKDTALPSPEWSSDHIALLAEF 549 (557)
Q Consensus 515 -v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef 549 (557)
+.+..-..+ . ....++|||.||+++|
T Consensus 228 ~v~~~~i~~~--~-------~~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 228 RCVDCGIDYD--I-------RGSEKPSDHCPVVLEF 254 (254)
T ss_pred hhhEEEEcHH--H-------hcCCCCCCcccEEEeC
Confidence 333321111 0 0134789999999985
No 11
>PTZ00297 pantothenate kinase; Provisional
Probab=99.85 E-value=5.2e-20 Score=219.77 Aligned_cols=188 Identities=23% Similarity=0.300 Sum_probs=116.4
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhc-CCCcEEEEeccchhh-----------HHHHhHH
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQNDH-----------FEEFFAP 270 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~-~~aDIIcLQEV~~~~-----------~~~~l~~ 270 (557)
....||||||||..-. . .+. .| ..+.|...|.. .++||||||||.... +...+..
T Consensus 7 ~~~~l~VlTyNv~~~~--~-----~~~----~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~ 73 (1452)
T PTZ00297 7 GCAQARVLSYNFNILP--R-----GCG----GF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVD 73 (1452)
T ss_pred CCCceEEEEEEccccC--C-----Ccc----cc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHH
Confidence 4458999999987421 0 111 12 13556666666 477999999998632 3344566
Q ss_pred HHhhCCCeEEEEecCCcccC----CCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCc
Q 008666 271 ELDKHGYQALYKRKTNEVYN----GNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDN 346 (557)
Q Consensus 271 ~L~~~gY~~~~~~k~~~~~~----~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~ 346 (557)
.|+..||.++...+.. .+. .......|+||+ |||++++...+.|..... .+...+|
T Consensus 74 ~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~-----------~~~~~~R----- 133 (1452)
T PTZ00297 74 ELKARGFHHYVISKQP-SYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHER-----------GEQSVRR----- 133 (1452)
T ss_pred HHHhcCCceeEeecCc-cccccccCccccCCEEEEE---ECCChhhceeeecCcccc-----------ccccccc-----
Confidence 7777899776554432 111 112356799999 999999988877653210 0111233
Q ss_pred EEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHH-Hh-------hcCCCCEEEEccCCC
Q 008666 347 VALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK-IA-------ASADIPMLVCGDFNS 418 (557)
Q Consensus 347 val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~-~~-------~~~~~pvIl~GDFNs 418 (557)
.++.+.++.... .+..+.+.|+||||.+.... ..|..|++.+.+.++. +. ...+.|+|||||||.
T Consensus 134 G~L~a~I~vp~~------~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~ 206 (1452)
T PTZ00297 134 GCLFAEVEVPLA------EGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNI 206 (1452)
T ss_pred ceEEEEEEcccc------CCCCceEEEEEeCCCCCCCc-chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCC
Confidence 246666654100 01235799999999876432 4688999988888775 21 113569999999996
Q ss_pred C----C----CChhhhhhhc
Q 008666 419 V----P----GSAPHALLAM 430 (557)
Q Consensus 419 ~----p----~s~~~~lL~~ 430 (557)
. + .+..|+.|..
T Consensus 207 ~~~~~~~~~~~s~e~~~ml~ 226 (1452)
T PTZ00297 207 NGIDPHNGGHPTKRFQELLN 226 (1452)
T ss_pred ccccccccCCccHHHHHHHH
Confidence 5 2 3456655553
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=3.2e-19 Score=178.52 Aligned_cols=150 Identities=23% Similarity=0.331 Sum_probs=89.0
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHH-HHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNL-LREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 285 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i-~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~ 285 (557)
|||+||||.... .|.+.+ ++.|..++||||||||+.... ..+....+...||..++....
T Consensus 1 lri~t~Nv~g~~------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~ 61 (255)
T TIGR00633 1 MKIISWNVNGLR------------------ARLHKLFLDWLKEEQPDVLCLQETKVAD-EQFPAELFEELGYHVFFHGAK 61 (255)
T ss_pred CEEEEEecccHH------------------HHhhccHHHHHHhcCCCEEEEEeccCch-hhCCHhHhccCCceEEEeecc
Confidence 699999998521 233455 899999999999999997653 222223345679988776543
Q ss_pred CcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCC
Q 008666 286 NEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 365 (557)
Q Consensus 286 ~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~ 365 (557)
.. ...|+||++|. ++..... .+... . .....| .+ .++.
T Consensus 62 ~~-------~~~G~ailsr~---~~~~~~~-~~~~~-----~--------~~~~~r------~l--~~~~---------- 99 (255)
T TIGR00633 62 SK-------GYSGVAILSKV---EPLDVRY-GFGGE-----E--------HDEEGR------VI--TAEF---------- 99 (255)
T ss_pred cC-------CcceEEEEEcC---CcceEEE-CCCCC-----c--------ccCCCc------EE--EEEE----------
Confidence 21 23599999553 3332211 01000 0 000111 11 1221
Q ss_pred CCcceEEEEEeccccCcCCc----ccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCC
Q 008666 366 GKRQLLCVANTHVNVHQELK----DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 421 (557)
Q Consensus 366 ~~~~~l~V~NTHL~~~p~~~----~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~ 421 (557)
+.+.|+++|+....... ..|..|...+.+.+.+... .+.|+|+|||||+.+.
T Consensus 100 ---~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~-~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 100 ---DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYEKELD-AGKPVIICGDMNVAHT 155 (255)
T ss_pred ---CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHHHHHh-cCCcEEEEeecccCCC
Confidence 24889999986543211 3466677767666654432 3569999999998875
No 13
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.80 E-value=4.5e-19 Score=177.30 Aligned_cols=274 Identities=19% Similarity=0.224 Sum_probs=165.7
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHh-hCCCeEEEE
Q 008666 204 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYK 282 (557)
Q Consensus 204 ~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~gY~~~~~ 282 (557)
.-++||+|.|+++-.|+..+ -..|...+-+++.....||+.||||+...--.+|+.... .+.|...|.
T Consensus 6 a~~lriltlN~Wgip~~Sk~-----------R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH 74 (422)
T KOG3873|consen 6 ALELRILTLNIWGIPYVSKD-----------RRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH 74 (422)
T ss_pred hheeeeeEeeccccccccch-----------hHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhh
Confidence 35799999999997766543 246778999999999999999999976433334555554 466766665
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhc--c-cCcEEEEEEEeeeecC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRL--V-KDNVALIVVLEAKFSN 359 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~--~-~~~val~~~Le~k~~~ 359 (557)
.. - ...|+++| ||+++++...-.|.- ++...++.|. . ...|++ ++|+.
T Consensus 75 SG--i-------mGaGL~vf---SK~PI~~t~~~~y~l------------NG~p~~i~rGDWf~GK~Vgl-~~l~~---- 125 (422)
T KOG3873|consen 75 SG--I-------MGAGLCVF---SKHPILETLFHRYSL------------NGYPHAIHRGDWFGGKGVGL-TVLLV---- 125 (422)
T ss_pred cc--c-------ccCceEEe---ecCchhhhhhhcccc------------CCccceeeeccccccceeEE-EEEee----
Confidence 42 2 13499999 999998764432210 0011111111 0 123333 45554
Q ss_pred CCCCCCCCcceEEEEEeccccCcC-----CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhc-CCC
Q 008666 360 QGADTPGKRQLLCVANTHVNVHQE-----LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM-GKV 433 (557)
Q Consensus 360 ~~~~~~~~~~~l~V~NTHL~~~p~-----~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~-g~v 433 (557)
.++.|.+.||||+..-+ +-.-|..|+-.+.+.|+...+ ...-||+|||||..|.+-.+++|+. |.+
T Consensus 126 -------~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q-~~~vVI~~GDLN~~P~dl~~~ll~~a~l~ 197 (422)
T KOG3873|consen 126 -------GGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQ-NADVVILAGDLNMQPQDLGHKLLLSAGLV 197 (422)
T ss_pred -------CCEEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHHHhc-CCcEEEEecCCCCCccccceeeeeccchh
Confidence 35889999999965421 223599999999999887654 3456999999999999999999874 333
Q ss_pred C---CCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccc----cCCcccceeEE
Q 008666 434 E---PVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHC----TRDFIGTLDYI 506 (557)
Q Consensus 434 ~---~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~----t~~f~~~LDyI 506 (557)
| ..|+|-...+.+.+.+..++... .+.| +....||.- ..-+..|||||
T Consensus 198 daw~~~h~~q~e~~~~r~s~~~~l~~g-----------------------~tcd--~~~N~y~~aqk~~ddp~~~RiDYv 252 (422)
T KOG3873|consen 198 DAWTSLHLDQCESDSFRLSEDKELVEG-----------------------NTCD--SPLNCYTSAQKREDDPLGKRIDYV 252 (422)
T ss_pred hhHhhhchhhhcCcccccchhhhhhcC-----------------------Cccc--CcchhhhHHHhCCCCccceeeeEE
Confidence 2 12333333332222111111000 0001 112233321 11247799999
Q ss_pred EeeCCCcceeeecccCChhhhccCCCCCC-CCCCCCcceeeEEEEEeccCC
Q 008666 507 FYTADSLSVESLLELLDEDSLRKDTALPS-PEWSSDHIALLAEFRCKPRAR 556 (557)
Q Consensus 507 f~s~~~l~v~~~~~~~~~~~~~~~~~lP~-~~~pSDH~pl~aef~~~~~~~ 556 (557)
|+++..+.++-..-... ....|. ....|||.+++|.|.+.++..
T Consensus 253 l~k~~~~~~~~a~~~~t------~~rvP~~d~s~SDH~Al~a~L~I~~~~~ 297 (422)
T KOG3873|consen 253 LVKPGDCNAKIAEVEFT------EPRVPGEDCSYSDHEALMATLKIFKQPP 297 (422)
T ss_pred EEcCcceEEEeeeEEec------CCCCCCCCCCccchhhheeEEEeecCCC
Confidence 99998755433211111 112332 335799999999999987543
No 14
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.80 E-value=1.7e-18 Score=173.10 Aligned_cols=235 Identities=18% Similarity=0.277 Sum_probs=128.8
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHH-HHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 285 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~-~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~ 285 (557)
|||+||||..- ..|. ..+.+.|...+||||||||+-..... + .+...||..++....
T Consensus 1 mki~swNVNgi------------------r~~~~~~~~~~l~~~~~DIiclQEtK~~~~~-~---~~~~~gY~~~~~~~~ 58 (250)
T PRK13911 1 MKLISWNVNGL------------------RACMTKGFMDFFNSVDADVFCIQESKMQQEQ-N---TFEFKGYFDFWNCAI 58 (250)
T ss_pred CEEEEEEeCCh------------------hHhhhhhHHHHHHhcCCCEEEEEeecccccc-c---ccccCCceEEEEecc
Confidence 68999999963 2233 35888999999999999999543221 1 134569976654221
Q ss_pred CcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCC
Q 008666 286 NEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 365 (557)
Q Consensus 286 ~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~ 365 (557)
.. ...|+||++|.....+. ..+... ..+...|. +.+ +.
T Consensus 59 ~k-------gy~GVAi~~k~~~~~v~----~~~~~~-------------~~d~eGR~------I~~--~~---------- 96 (250)
T PRK13911 59 KK-------GYSGVVTFTKKEPLSVS----YGINIE-------------EHDKEGRV------ITC--EF---------- 96 (250)
T ss_pred cC-------ccceEEEEEcCCchheE----EcCCCC-------------cccccCCE------EEE--EE----------
Confidence 11 23599999776421111 111100 00111232 222 22
Q ss_pred CCcceEEEEEeccccCcCCcccHHHH----HHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCC
Q 008666 366 GKRQLLCVANTHVNVHQELKDVKLWQ----VHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLA 441 (557)
Q Consensus 366 ~~~~~l~V~NTHL~~~p~~~~vR~~Q----~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~ 441 (557)
..+.|+|+....... ...|+.+ ...+.+.|+++. .+.|+|+|||||..+.. +|...+...
T Consensus 97 ---~~~~l~nvY~Pn~~~-~~~r~~~K~~~~~~~~~~l~~l~--~~~~~Ii~GD~Nva~~~----------~D~~~~~~~ 160 (250)
T PRK13911 97 ---ESFYLVNVYTPNSQQ-ALSRLSYRMSWEVEFKKFLKALE--LKKPVIVCGDLNVAHNE----------IDLENPKTN 160 (250)
T ss_pred ---CCEEEEEEEecCCCC-CCcchHHHHHHHHHHHHHHHhcc--cCCCEEEEccccCCCCh----------hhccChhhc
Confidence 138899988754321 2223322 344445555442 34699999999987752 221111100
Q ss_pred CCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccccc-------CCcccceeEEEeeCCCcc
Q 008666 442 VDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCT-------RDFIGTLDYIFYTADSLS 514 (557)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t-------~~f~~~LDyIf~s~~~l~ 514 (557)
....+.. ....+.|..+ .+.|+.|.+|.++|.. ...||+|. .+...||||||+++. +.
T Consensus 161 ~~~~gf~------------~~er~~f~~~-l~~gl~D~~R~~~p~~-~~~yTww~~~~~~~~~n~g~RIDyilvs~~-~~ 225 (250)
T PRK13911 161 RKNAGFS------------DEERGKFSEL-LNAGFIDTFRYFYPNK-EKAYTWWSYMQQARDKNIGWRIDYFLCSNP-LK 225 (250)
T ss_pred CCCCCcC------------HHHHHHHHHH-HhcCCeehhhhhCCCC-CCCCccCCCcCCccccCCcceEEEEEEChH-Hh
Confidence 0000100 0112233333 3358888888888763 24599875 244669999999987 32
Q ss_pred --eeeecccCChhhhccCCCCCCCCCCCCcceeeEEE
Q 008666 515 --VESLLELLDEDSLRKDTALPSPEWSSDHIALLAEF 549 (557)
Q Consensus 515 --v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef 549 (557)
+..+.. . ....+|||.||+++|
T Consensus 226 ~~~~~~~i-~------------~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 226 TRLKDALI-Y------------KDILGSDHCPVGLEL 249 (250)
T ss_pred hhEEEEEE-C------------CCCCCCCcccEEEEe
Confidence 222211 1 123479999999987
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.78 E-value=8.8e-18 Score=169.10 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=111.2
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHH--hHHHHhh---CCCeE
Q 008666 205 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF--FAPELDK---HGYQA 279 (557)
Q Consensus 205 ~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~--l~~~L~~---~gY~~ 279 (557)
..||||||||.. +.. ...+|..|++.|++.|. ++|||++|||...+.... +.+.|.+ .+|..
T Consensus 16 ~~l~I~SfNIr~--fgd---------~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~ 82 (276)
T smart00476 16 ASLRICAFNIQS--FGD---------SKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSY 82 (276)
T ss_pred CcEEEEEEECcc--cCC---------ccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceE
Confidence 479999999994 222 24569999999999998 779999999976554332 2333432 35776
Q ss_pred EEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecC
Q 008666 280 LYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSN 359 (557)
Q Consensus 280 ~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~ 359 (557)
+.....+. ....|..|+|||++++++++...+ .+. +. .+.+.+.|. ..++.|+.+.
T Consensus 83 v~s~r~gr-----~~~~E~~a~~Yr~drv~v~~~~~f--~d~---------~~-~~~~~F~Re-----P~~~~F~~~~-- 138 (276)
T smart00476 83 VSSEPLGR-----NSYKEQYLFLYRSDLVSVLDSYLY--DDG---------CE-CGNDVFSRE-----PFVVKFSSPS-- 138 (276)
T ss_pred EecCCCCC-----CCCCEEEEEEEecceEEEccccee--cCC---------CC-Ccccccccc-----ceEEEEEeCC--
Confidence 65544321 124588999999999999988653 221 00 134556665 4778888742
Q ss_pred CCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHH-hhcCCCCEEEEccCCCCCC
Q 008666 360 QGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKI-AASADIPMLVCGDFNSVPG 421 (557)
Q Consensus 360 ~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~-~~~~~~pvIl~GDFNs~p~ 421 (557)
...+.|.++|+|+... .+..++..|.+.+... .+....|+||+||||+.++
T Consensus 139 ------~~~~~F~li~~H~~p~-----~~~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 139 ------TAVKEFVIVPLHTTPE-----AAVAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred ------CCCccEEEEEecCChH-----HHHHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCC
Confidence 1245799999999553 2444555554432222 2224679999999998764
No 16
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.72 E-value=7e-17 Score=155.68 Aligned_cols=158 Identities=19% Similarity=0.298 Sum_probs=108.1
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 282 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~ 282 (557)
....|+++||||...- ..+...|...|...|+.++|||||||||-...|. .+.. + +.-|..++.
T Consensus 96 ~g~~~S~~~WnidgLd-------------ln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~-~~~K-~-~s~y~i~~~ 159 (349)
T KOG2756|consen 96 QGSMFSLITWNIDGLD-------------LNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYS-YLKK-R-SSNYEIITG 159 (349)
T ss_pred cccEEEEEEeeccccc-------------cchHHHHHHHHHHHHHhcCCCEEEEeecCchhhH-HHHH-h-hhheeEEEe
Confidence 3456889999998421 1234589999999999999999999999876443 2233 2 235665555
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
.+... .| ++.-..++|.+.....+.|.+.. ..|- . +++ |..+
T Consensus 160 ~~~~~---------~~-~~~l~~s~~~Vks~~~i~F~NS~----------------M~R~----L-~I~--Ev~v----- 201 (349)
T KOG2756|consen 160 HEEGY---------FT-AIMLKKSRVKVKSQEIIPFPNSK----------------MMRN----L-LIV--EVNV----- 201 (349)
T ss_pred cccee---------ee-eeeeehhhcCccccceeccCcch----------------hhhe----e-EEE--EEee-----
Confidence 55332 13 34446688999888888876531 1221 1 333 3322
Q ss_pred CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhc-CCCCEEEEccCCC
Q 008666 363 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS-ADIPMLVCGDFNS 418 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~-~~~pvIl~GDFNs 418 (557)
.|..++++|+||.+.......|..|..+.++.+++..+. ++..|||.||+|-
T Consensus 202 ----~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~Nl 254 (349)
T KOG2756|consen 202 ----SGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEAIESLPNATVIFGGDTNL 254 (349)
T ss_pred ----cCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccc
Confidence 355699999999877666678999999888887776543 5678999999994
No 17
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.71 E-value=1.1e-16 Score=156.51 Aligned_cols=155 Identities=28% Similarity=0.310 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCC-eEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEE
Q 008666 238 RRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGY-QALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEV 316 (557)
Q Consensus 238 R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY-~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i 316 (557)
+++.|++.|...+|||||||||....+.+.+...+....+ ............ .....|++|+||.+.+..+.....
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~i~~r~~~~~~~~~~~~ 93 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPS---DAGGYGVAILSRSPIFSSVSYVFS 93 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTT---CSSSEEEEEEESSCCCEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccc---cccCceEEEEEccccccccccccc
Confidence 3345999999999999999999877666776777775444 444444322100 002469999988875544443332
Q ss_pred EechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHH
Q 008666 317 EFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLL 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~ 396 (557)
.+...... ...+..... ..+.+.. .++.|+|+|+|+.+. ...|..|...++
T Consensus 94 ~~~~~~~~-------------~~~~~~~~~--~~~~~~~-----------~~~~i~v~~~H~~~~---~~~~~~~~~~~~ 144 (249)
T PF03372_consen 94 LFSKPGIR-------------IFRRSSKSK--GIVPVSI-----------NGKPITVVNVHLPSS---NDERQEQWRELL 144 (249)
T ss_dssp EESSSTTC-------------EEEEEEEEE--EEEEEEE-----------ETEEEEEEEEETTSH---HHHHHHHHHHHH
T ss_pred cccccccc-------------ccccccccc--ccccccc-----------cceEEEeeecccccc---chhhhhhhhhhh
Confidence 22111000 000000000 0111111 156799999998662 244555566788
Q ss_pred HHHHHHhhcC-CCCEEEEccCCCCCCChh
Q 008666 397 KGLEKIAASA-DIPMLVCGDFNSVPGSAP 424 (557)
Q Consensus 397 ~~l~~~~~~~-~~pvIl~GDFNs~p~s~~ 424 (557)
+.+.++.... ..|+|||||||+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 145 ARIQKIYADNPNEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp HHHHHHHHTSSCCEEEEEEE-SS-BSSGG
T ss_pred hhhhhcccccccceEEEEeecccCCccch
Confidence 8887775432 237999999999887644
No 18
>PLN03158 methionine aminopeptidase; Provisional
Probab=99.69 E-value=1.8e-17 Score=175.00 Aligned_cols=53 Identities=34% Similarity=0.750 Sum_probs=48.0
Q ss_pred CcccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHHhhh
Q 008666 13 RKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 66 (557)
Q Consensus 13 ~~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~ 66 (557)
..+.+|+ +|+++|+||||+|+|+|+++..||||||+|||++|++||.+|+.++
T Consensus 7 ~~~~~c~-~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~ 59 (396)
T PLN03158 7 TSPLACA-RCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAK 59 (396)
T ss_pred CCccccc-CCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhh
Confidence 3456794 9999999999999999998788999999999999999999998754
No 19
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.56 E-value=1.6e-13 Score=136.23 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcC-CCcEEEEeccchhhHHH-----HhHH-----
Q 008666 202 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGY-RADIVCLQEVQNDHFEE-----FFAP----- 270 (557)
Q Consensus 202 ~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~-~aDIIcLQEV~~~~~~~-----~l~~----- 270 (557)
.....++|+|||+..-.+++. -.|. -.+.+.|.++ ++|||.|||+..-.... ...+
T Consensus 20 ~~~~~~~~~twn~qg~s~~~~----------~kw~---~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~ 86 (271)
T PRK15251 20 ANLEDYKVATWNLQGSSASTE----------SKWN---VNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGI 86 (271)
T ss_pred cccccceEEEeecCCCCCCCh----------hhhh---hhHHHHhcCCCCCCEEEEEecCCCcccccccccccccccccc
Confidence 345689999999997544332 2242 1355556665 59999999997532110 0011
Q ss_pred -------HHh---hCCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhh
Q 008666 271 -------ELD---KHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALN 340 (557)
Q Consensus 271 -------~L~---~~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (557)
.|. .-++.++|.... + +. ...-|+||+ ||++..+...+... . ...
T Consensus 87 ~v~ey~w~l~~~srpgm~YiY~~ai-D-~~---ggr~glAIl---Sr~~a~~~~~l~~p------------~-----~~~ 141 (271)
T PRK15251 87 PIDEYTWNLGTRSRPNQVYIYYSRV-D-VG---ANRVNLAIV---SRRRADEVIVLRPP------------T-----VAS 141 (271)
T ss_pred CcccEEEEccCccCCCceEEEEecc-c-CC---CCceeEEEE---ecccccceEEecCC------------C-----Ccc
Confidence 010 113444444321 1 11 233599999 88887665554321 0 012
Q ss_pred hcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCC
Q 008666 341 RLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP 420 (557)
Q Consensus 341 R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p 420 (557)
|- .+.+ +. .+ +.+++||+.+... ..|..|+..+.+.... .....|.++|||||..|
T Consensus 142 Rp-----ilgi--~i-----------~~--~~ffstH~~a~~~--~da~aiV~~I~~~f~~--~~~~~pw~I~GDFNr~P 197 (271)
T PRK15251 142 RP-----IIGI--RI-----------GN--DVFFSIHALANGG--TDAGAIVRAVHNFFRP--NMRHINWMIAGDFNRSP 197 (271)
T ss_pred cc-----eEEE--Ee-----------cC--eEEEEeeecCCCC--ccHHHHHHHHHHHHhh--ccCCCCEEEeccCCCCC
Confidence 21 1212 22 11 6899999977642 3388888877777651 12247999999999999
Q ss_pred CChhhhhh
Q 008666 421 GSAPHALL 428 (557)
Q Consensus 421 ~s~~~~lL 428 (557)
++..+.++
T Consensus 198 ~sl~~~l~ 205 (271)
T PRK15251 198 DRLESTLD 205 (271)
T ss_pred cchhhhhc
Confidence 98866654
No 20
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.49 E-value=1.5e-13 Score=137.73 Aligned_cols=159 Identities=21% Similarity=0.121 Sum_probs=90.3
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 282 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~ 282 (557)
....++++++|++++. .. ...++..|+..++|+|.+||...-.- .. ...++ ..|.++..
T Consensus 85 ~~~~~~~l~~N~r~~n---~~---------------~~k~Lsl~~~~~~D~v~~~E~~~~~~-~~-~~~l~-~~yP~~~~ 143 (309)
T COG3021 85 DQRLLWNLQKNVRFDN---AS---------------VAKLLSLIQQLDADAVTTPEGVQLWT-AK-VGALA-AQYPAFIL 143 (309)
T ss_pred cchhhhhhhhhccccC---cC---------------HHHHHHHHhhhCcchhhhHHHHHHhH-hH-HHHHH-HhCCceee
Confidence 3457899999988642 11 15667777777899999999965321 11 12333 34543322
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
...++ ..-+.+++.++......+.+ ..-|.-++.++....+
T Consensus 144 ~~~~~-------~~~~~a~~sr~~~~~~~~~e-----------------------~~~~~pk~~~~t~~~~--------- 184 (309)
T COG3021 144 CQHPT-------GVFTLAILSRRPCCPLTEAE-----------------------PWLRLPKSALATAYPL--------- 184 (309)
T ss_pred cCCCC-------CeeeeeeccccccccccccC-----------------------ccccCCccceeEEEEc---------
Confidence 21111 12356676444321111100 0111112223332222
Q ss_pred CCCCCcceEEEEEeccc-cCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhh
Q 008666 363 DTPGKRQLLCVANTHVN-VHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLA 429 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~-~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~ 429 (557)
..|+.+.|++.|.. +.-.....| .|...|.+.+..+ +.|+|++||||+.|.|..++.|.
T Consensus 185 ---~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~i~~~----~gpvIlaGDfNa~pWS~~~~R~~ 244 (309)
T COG3021 185 ---PDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQIAGH----SGPVILAGDFNAPPWSRTAKRMA 244 (309)
T ss_pred ---CCCCEEEEEeeccccccCCccHHH-HHHHHHHHHHHcC----CCCeEEeecCCCcchhHHHHHHH
Confidence 24678999999996 433333344 7777676666654 46999999999999999877665
No 21
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.42 E-value=2.5e-12 Score=140.16 Aligned_cols=278 Identities=19% Similarity=0.256 Sum_probs=163.6
Q ss_pred CCCcEEEEEeccCCCcCCCCC-------CCCCCCCc--ccChHHHHHHHHHHHhcCCCcEEEEeccchhhH--------H
Q 008666 203 STGTFSVLSYNILSDVYATSE-------SYSYCPSW--ALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF--------E 265 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~-------~y~y~p~~--~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~--------~ 265 (557)
-.+.|||.|||||... ..-+ .|..|... ..+.+..+..|...|...++|||.|-||+.+.| .
T Consensus 460 v~G~LkiasfNVlNyf-~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai~ 538 (798)
T COG2374 460 VGGSLKIASFNVLNYF-NKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAIA 538 (798)
T ss_pred cCceeeeeeeehhhhh-ccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHHH
Confidence 4568999999999732 2111 22222221 223445567899999999999999999987632 2
Q ss_pred HHhHHHHh-hCC----CeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhh
Q 008666 266 EFFAPELD-KHG----YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALN 340 (557)
Q Consensus 266 ~~l~~~L~-~~g----Y~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (557)
+ +...|. +.| |..+.....+. ..-...+++++||.++..++....+.-+.+..+.-+ ....-+
T Consensus 539 ~-lV~~lna~~G~~~~y~~v~p~~~~~----lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~-------~~~~n~ 606 (798)
T COG2374 539 Q-LVNALNAKAGAGTRYAFVAPGRNGG----LGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGE-------IDDNNA 606 (798)
T ss_pred H-HHHHHHhhcCCCceEEEEecCccCC----cCCCceeEEEEeccceEEeccccccccccccccccc-------cccccc
Confidence 2 233343 222 44444332211 111335899999999999988776542222111000 001111
Q ss_pred hcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccC----c----------CCcccHHHHHHHHHHHHHHHh-hc
Q 008666 341 RLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVH----Q----------ELKDVKLWQVHTLLKGLEKIA-AS 405 (557)
Q Consensus 341 R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~----p----------~~~~vR~~Q~~~L~~~l~~~~-~~ 405 (557)
|. -+...++.+ ..+..|+|+.-||.+. | ..+..|.+|+.+|..+|+... ..
T Consensus 607 R~-----~laqtF~~~---------~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~ 672 (798)
T COG2374 607 RP-----PLAQTFQDL---------SGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGK 672 (798)
T ss_pred Cc-----chhhhhhhc---------cCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccc
Confidence 21 122233332 2345588888899642 3 134579999999999999743 34
Q ss_pred CCCCEEEEccCCCCCCChhhhhhhc-CCCCCCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCC
Q 008666 406 ADIPMLVCGDFNSVPGSAPHALLAM-GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMD 484 (557)
Q Consensus 406 ~~~pvIl~GDFNs~p~s~~~~lL~~-g~v~~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d 484 (557)
.+.+++|.||||+..-+.+.+.|.. |... +. ..+
T Consensus 673 ~d~~~viLGD~N~y~~edpI~~l~~aGy~~-------------l~-------------------------------~~~- 707 (798)
T COG2374 673 ADADIVILGDFNDYAFEDPIQALEGAGYMN-------------LA-------------------------------ARF- 707 (798)
T ss_pred cCCCEEEEeccchhhhccHHHHHhhcCchh-------------hh-------------------------------hhc-
Confidence 5789999999999998888888876 3111 00 000
Q ss_pred CCCCCCccccccCCcccceeEEEeeCCCcc-eeeec----ccCChhhhccCCCC----------CCCCCCCCcceeeEEE
Q 008666 485 PTTNEPLFTHCTRDFIGTLDYIFYTADSLS-VESLL----ELLDEDSLRKDTAL----------PSPEWSSDHIALLAEF 549 (557)
Q Consensus 485 ~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~-v~~~~----~~~~~~~~~~~~~l----------P~~~~pSDH~pl~aef 549 (557)
......|++...+..+.|||||.+..... +.... ---++.-+.....| ++...+|||-||+..|
T Consensus 708 -~~~~~~YSY~f~G~~gtLDhaLas~sl~~~v~~a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvgl 786 (798)
T COG2374 708 -HDAGDRYSYVFNGQSGTLDHALASASLAAQVSGATEWHINADEPDALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGL 786 (798)
T ss_pred -cCCCCceEEEECCccchHhhhhhhhhhhhhccCceeeeecccccchhhhhhhhccccccccccCCccccCCCCCeEEEE
Confidence 01244788888999999999999865211 11110 00000001111111 3677899999999999
Q ss_pred EEec
Q 008666 550 RCKP 553 (557)
Q Consensus 550 ~~~~ 553 (557)
.|..
T Consensus 787 nL~~ 790 (798)
T COG2374 787 NLLG 790 (798)
T ss_pred Eecc
Confidence 9854
No 22
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.4e-13 Score=131.26 Aligned_cols=70 Identities=30% Similarity=0.705 Sum_probs=58.1
Q ss_pred cccccc-cccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHHhhhcccccCCCchhhhccCCCCCCC
Q 008666 14 KVAVCS-VHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGS 88 (557)
Q Consensus 14 ~~~~c~-~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (557)
...+|+ .+|+++|+||||+|+|+|++ .+|||+|+|||.+|..||.+|..+... ...| .+++++.|.++|+
T Consensus 5 ~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~~~-~~~g--~~~p~p~~~~~g~ 75 (369)
T KOG2738|consen 5 AKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKALRI-RKEG--QYNPWPKFRFTGP 75 (369)
T ss_pred hhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccchhh-hhhc--cCCCCccccccCC
Confidence 456788 99999999999999999998 479999999999999999999866221 2222 3679999999983
No 23
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.08 E-value=2.8e-09 Score=110.11 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=43.8
Q ss_pred cceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh-----cCCCCEEEEccCCCCCCC----hhhhhhhcC
Q 008666 368 RQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-----SADIPMLVCGDFNSVPGS----APHALLAMG 431 (557)
Q Consensus 368 ~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~-----~~~~pvIl~GDFNs~p~s----~~~~lL~~g 431 (557)
+..|+++|+||..+......|..|...+++.+.--.. .....+|++||||-.-+. .+-+++..+
T Consensus 137 ~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~ 209 (310)
T smart00128 137 DTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKK 209 (310)
T ss_pred CcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhC
Confidence 4579999999988877677899999888766531100 123579999999975442 233555544
No 24
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=3e-05 Score=87.22 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=42.9
Q ss_pred ceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh---cCCCCEEEEccCCC---CCCChhhhhhhcCCC
Q 008666 369 QLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---SADIPMLVCGDFNS---VPGSAPHALLAMGKV 433 (557)
Q Consensus 369 ~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~---~~~~pvIl~GDFNs---~p~s~~~~lL~~g~v 433 (557)
..+|+++.||......-+.|-.-...+.+.|.=-.. .....|+.|||||- .++..+.+.+..+.+
T Consensus 673 TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~ 743 (1080)
T KOG0566|consen 673 TSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDL 743 (1080)
T ss_pred ccEEEEecccccccchHhhhhhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhccH
Confidence 359999999987765555566556656555431100 12346999999995 456677778877654
No 25
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.69 E-value=6.3e-05 Score=65.75 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=21.8
Q ss_pred ccccccCCcccceeEEEeeCCCcceeeecccCChhhhccCCCCCCCCCCCCcceee
Q 008666 491 LFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALL 546 (557)
Q Consensus 491 ~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~ 546 (557)
.+|.+...-..+||+||.+...+.. ...... .....|||.||+
T Consensus 77 ~~T~~~~~~~s~iD~~~~s~~~~~~-~~~~~~------------~~~~~SDH~~I~ 119 (119)
T PF14529_consen 77 PPTFISNSHGSRIDLILTSDNLLSW-CVWVIS------------SDDSGSDHCPIT 119 (119)
T ss_dssp --SEEECCCEE--EEEEEECCGCCC-EEEEEE------------TTSSSSSB--EE
T ss_pred CCcccCCCCCceEEEEEECChHHhc-CcEEEe------------CCCCCCCccCCC
Confidence 3666555447899999999873332 111111 123579999985
No 26
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=97.30 E-value=0.00091 Score=70.23 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=34.5
Q ss_pred ceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHh---hcCCCCEEEEccCCC
Q 008666 369 QLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA---ASADIPMLVCGDFNS 418 (557)
Q Consensus 369 ~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~---~~~~~pvIl~GDFNs 418 (557)
..+|++|.||...-..-+.|..-.+.++..|.--. -.....++++||||.
T Consensus 165 t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNy 217 (460)
T COG5411 165 TSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNY 217 (460)
T ss_pred CCcEEEecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCc
Confidence 35999999998877666777777776666553210 011245999999994
No 27
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=97.00 E-value=0.00058 Score=47.35 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=28.4
Q ss_pred cccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHH
Q 008666 20 VHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 60 (557)
Q Consensus 20 ~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~ 60 (557)
..|++++...|+.| + ..+|||.+|.+..|..||.
T Consensus 2 ~~C~~~~~~~C~~C---~----~~~YCs~~Cq~~~w~~Hk~ 35 (37)
T PF01753_consen 2 AVCGKPALKRCSRC---K----SVYYCSEECQRADWPYHKF 35 (37)
T ss_dssp TTTSSCSSEEETTT---S----SSEESSHHHHHHHHHHHCC
T ss_pred cCCCCCcCCcCCCC---C----CEEecCHHHHHHHHHHHhh
Confidence 57888877799988 2 2689999999999999974
No 28
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=96.68 E-value=0.0043 Score=68.21 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=33.1
Q ss_pred cceEEEEEeccccCcCCc--ccHHHHHHHHHHHHH--HHhh-------cCCCCEEEEccCCCCC
Q 008666 368 RQLLCVANTHVNVHQELK--DVKLWQVHTLLKGLE--KIAA-------SADIPMLVCGDFNSVP 420 (557)
Q Consensus 368 ~~~l~V~NTHL~~~p~~~--~vR~~Q~~~L~~~l~--~~~~-------~~~~pvIl~GDFNs~p 420 (557)
+..||++|+||.++.... ..|..+...+++.+. .... .....+|++||||-.-
T Consensus 419 ~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRI 482 (621)
T PLN03191 419 QSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRL 482 (621)
T ss_pred CcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccc
Confidence 457999999998765432 346666776665432 0000 0123699999999643
No 29
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=96.23 E-value=0.038 Score=57.51 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=39.0
Q ss_pred cccccccCCCCCCCCccccc-------cCCcccceeEEEeeCCCcceeeecccCChhhhccCCCCCCCCCCCCcceeeEE
Q 008666 476 MEHQRRRMDPTTNEPLFTHC-------TRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAE 548 (557)
Q Consensus 476 ~~~~~~~~d~~~~~p~fTn~-------t~~f~~~LDyIf~s~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~ae 548 (557)
+++.++.+.+... ..||.| .++-..++||+.++...+....-. ++ .+.+..+|||-|+.+.
T Consensus 265 ~iDt~r~~~~~~~-~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~r~~------~I-----c~r~~~gsdh~pi~~~ 332 (335)
T KOG1294|consen 265 LIDTYRELHKDQK-KAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNGRRF------YI-----CSRPIHGSDHCPITLE 332 (335)
T ss_pred ceeehhhhcCCcc-ccccchhhccccccCCCCCceeEEEecCcCCCCCcee------ee-----ecCccCCCCCCCeeee
Confidence 4555555554322 266666 356678999999998733221111 11 1223679999999999
Q ss_pred EEE
Q 008666 549 FRC 551 (557)
Q Consensus 549 f~~ 551 (557)
|.+
T Consensus 333 ~~~ 335 (335)
T KOG1294|consen 333 FFL 335 (335)
T ss_pred ecC
Confidence 853
No 30
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=96.04 E-value=0.0068 Score=62.36 Aligned_cols=82 Identities=23% Similarity=0.174 Sum_probs=61.6
Q ss_pred CcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChh
Q 008666 345 DNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAP 424 (557)
Q Consensus 345 ~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~ 424 (557)
++++..+.|+. +.+ ++. -.+++++||++|+|-....|+.|...+++.+.+..... .+.+||||||..|.+..
T Consensus 121 ~~dGc~if~k~-~~~-----~sk-~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~-w~~l~~~l~n~e~gd~~ 192 (378)
T COG5239 121 KVDGCAIFLKR-FID-----SSK-LGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIA-WVCLFVGLFNKEPGDTP 192 (378)
T ss_pred ccceEEEEEEe-ccc-----cch-hhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcc-hhheeeeeccCCCCCce
Confidence 45566666665 211 111 25889999999999989999999999999888775422 57799999999999988
Q ss_pred hhhhhcCCCC
Q 008666 425 HALLAMGKVE 434 (557)
Q Consensus 425 ~~lL~~g~v~ 434 (557)
|-.++....+
T Consensus 193 ~va~Th~~w~ 202 (378)
T COG5239 193 YVANTHLPWD 202 (378)
T ss_pred eEEecccccc
Confidence 8777755433
No 31
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=93.25 E-value=0.046 Score=54.64 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=32.4
Q ss_pred ccccccccCCC-cccccchhhccCCCCCcceecChHHHHHhHHHHHHHHH
Q 008666 15 VAVCSVHPSEQ-ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 63 (557)
Q Consensus 15 ~~~c~~~~~~~-~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 63 (557)
+.-| .-||.+ |+-+|-+|.. ..||+|+|-|-.|-.||.+.+
T Consensus 319 ~~fC-stCG~~ga~KrCs~CKa-------v~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 319 CQFC-STCGHPGAKKRCSQCKA-------VAYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred cccc-cccCCCCccchhhhhHH-------HHHHHHHHHHhhhHHHHHHHH
Confidence 3456 577755 5789999942 348999999999999999876
No 32
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=92.48 E-value=0.36 Score=48.76 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=36.2
Q ss_pred cceEEEEEeccccCcCCc-----------ccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCCh-hhhhhh
Q 008666 368 RQLLCVANTHVNVHQELK-----------DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA-PHALLA 429 (557)
Q Consensus 368 ~~~l~V~NTHL~~~p~~~-----------~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~-~~~lL~ 429 (557)
+..|.++|+||+.+.... ..|..-...++....... ....|+++.||||-.-+.. .++.|.
T Consensus 79 ~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~-~~~~~lF~fGDfNyRld~~~~~e~L~ 151 (356)
T PTZ00312 79 TVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI-SPSDPLFIFGDFNVRLDGHNLLEWLK 151 (356)
T ss_pred CEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc-CCCCcEEEeccceeeeccccHHHHhc
Confidence 457999999998765322 223333333443333332 2457999999999765533 344444
No 33
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=91.27 E-value=0.26 Score=49.76 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=44.6
Q ss_pred cceEEEEEeccccCc-----------CCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCCh-hhhhhh
Q 008666 368 RQLLCVANTHVNVHQ-----------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA-PHALLA 429 (557)
Q Consensus 368 ~~~l~V~NTHL~~~p-----------~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~-~~~lL~ 429 (557)
++.+-++|.||+.+. .+...|..|+.+++++|..... .+..+++.||||+.-+|. +...|.
T Consensus 168 ~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~-~~~~~fVfGdfNfrLds~s~ln~l~ 240 (391)
T KOG1976|consen 168 GKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGL-RNDAIFVFGDFNFRLDSTSLLNYLA 240 (391)
T ss_pred CceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhcc-CceEEEEecccccccchHHHHHHHh
Confidence 567999999996442 2445788899999988876533 244899999999987764 345554
No 34
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=89.04 E-value=0.21 Score=32.86 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=20.4
Q ss_pred cccccccCCCcccccchhhccCCCCCcceecChHHHH
Q 008666 16 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFS 52 (557)
Q Consensus 16 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~ 52 (557)
..| .-|+..+.-.||.| +++ +||-+|+|
T Consensus 3 ~~C-~vC~~~~kY~Cp~C---~~~-----~CSl~C~k 30 (30)
T PF04438_consen 3 KLC-SVCGNPAKYRCPRC---GAR-----YCSLACYK 30 (30)
T ss_dssp EEE-TSSSSEESEE-TTT-----E-----ESSHHHHH
T ss_pred CCC-ccCcCCCEEECCCc---CCc-----eeCcEeEC
Confidence 357 45888888999988 444 99999997
No 35
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=83.87 E-value=1 Score=34.55 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=24.7
Q ss_pred ccchhhccCCCCCcceecChHHHHHhHHHHHHHHH
Q 008666 29 QCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 63 (557)
Q Consensus 29 ~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 63 (557)
-||.|- .-|| ...-|||++|=+..++.+|+..+
T Consensus 5 HC~~CG-~~Ip-~~~~fCS~~C~~~~~k~qk~~~~ 37 (59)
T PF09889_consen 5 HCPVCG-KPIP-PDESFCSPKCREEYRKRQKRMRK 37 (59)
T ss_pred cCCcCC-CcCC-cchhhhCHHHHHHHHHHHHHHHH
Confidence 477773 3343 24668999999999999998775
No 36
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=77.07 E-value=4.1 Score=30.77 Aligned_cols=38 Identities=32% Similarity=0.720 Sum_probs=27.0
Q ss_pred cccCC----CcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHHh
Q 008666 20 VHPSE----QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDR 64 (557)
Q Consensus 20 ~~~~~----~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~ 64 (557)
+.|.+ ...+.||.| ||| ++||.+=.++....|+.+-..
T Consensus 3 pv~~~~~~~~v~~~Cp~c---Gip----thcS~ehw~~D~e~H~~~c~~ 44 (55)
T PF13824_consen 3 PVCKKDLPAHVNFECPDC---GIP----THCSEEHWEDDYEEHRQLCER 44 (55)
T ss_pred CCCccccccccCCcCCCC---CCc----CccCHHHHHHhHHHHHHHHHH
Confidence 55555 345889988 995 688988777777777775543
No 37
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.64 E-value=1.5 Score=47.79 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=31.1
Q ss_pred cccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHHhhh
Q 008666 16 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 66 (557)
Q Consensus 16 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~ 66 (557)
.=| .+|.++|-+-|= ...| |||-+|-...|+.|++...+.+
T Consensus 528 QWC-~nC~~EAiy~CC--------WNTS-YCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 528 QWC-YNCLDEAIYHCC--------WNTS-YCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred HHH-HhhhHHHHHHhh--------cccc-ccCcchhhccchhHhhhhcccC
Confidence 347 788888876653 2233 6999999999999999886554
No 38
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=68.62 E-value=2.5 Score=37.91 Aligned_cols=30 Identities=33% Similarity=0.739 Sum_probs=23.4
Q ss_pred ccccccccCCC-cccccchhhccCCCCCcceecChHHHHH
Q 008666 15 VAVCSVHPSEQ-ATLQCLGCVKAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 15 ~~~c~~~~~~~-~~l~c~~c~~~~~~~~~~~fc~~~cf~~ 53 (557)
+.+| +-|.+. .+-+||.| .+| |||-.|||.
T Consensus 5 t~tC-~ic~e~~~KYKCpkC---~vP-----YCSl~CfKi 35 (157)
T KOG2857|consen 5 TTTC-VICLESEIKYKCPKC---SVP-----YCSLPCFKI 35 (157)
T ss_pred eeee-hhhhcchhhccCCCC---CCc-----cccchhhhh
Confidence 5678 778764 47999988 456 999999873
No 39
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=65.32 E-value=4.1 Score=31.57 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=18.1
Q ss_pred cccccchhhccCC---CCCcceecChHHHHH
Q 008666 26 ATLQCLGCVKAKI---PVAKSYHCSPKCFSD 53 (557)
Q Consensus 26 ~~l~c~~c~~~~~---~~~~~~fc~~~cf~~ 53 (557)
.+..||+|.|.-. .....=|||+-|-.-
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~I 35 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLI 35 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhh
Confidence 3578999988632 111234999999653
No 40
>PRK01343 zinc-binding protein; Provisional
Probab=63.78 E-value=4.1 Score=31.05 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=18.1
Q ss_pred ccccchhhccCCCCCcceecChHHHHH
Q 008666 27 TLQCLGCVKAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 27 ~l~c~~c~~~~~~~~~~~fc~~~cf~~ 53 (557)
+..||+|.|.-.. ...-|||+-|-.-
T Consensus 9 ~~~CP~C~k~~~~-~~rPFCS~RC~~i 34 (57)
T PRK01343 9 TRPCPECGKPSTR-EAYPFCSERCRDI 34 (57)
T ss_pred CCcCCCCCCcCcC-CCCcccCHHHhhh
Confidence 3678888886552 3445999999653
No 41
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=57.03 E-value=3.9 Score=31.22 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=12.8
Q ss_pred ccccchhhccCCC---CCcceecChHHHH
Q 008666 27 TLQCLGCVKAKIP---VAKSYHCSPKCFS 52 (557)
Q Consensus 27 ~l~c~~c~~~~~~---~~~~~fc~~~cf~ 52 (557)
+..||+|.|.-.. -...=|||+-|-.
T Consensus 2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~ 30 (57)
T PF03884_consen 2 TVKCPICGKPVEWSPENPFRPFCSERCKL 30 (57)
T ss_dssp EEE-TTT--EEE-SSSSS--SSSSHHHHH
T ss_pred cccCCCCCCeecccCCCCcCCcccHhhcc
Confidence 3568888775431 0123399999943
No 42
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=45.73 E-value=12 Score=28.00 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=8.8
Q ss_pred ceecChHHHHH
Q 008666 43 SYHCSPKCFSD 53 (557)
Q Consensus 43 ~~fc~~~cf~~ 53 (557)
=|||||+|...
T Consensus 28 YYFcse~~~~~ 38 (53)
T COG3350 28 YYFCSEECKEK 38 (53)
T ss_pred EEEeCHHHHHH
Confidence 58999999644
No 43
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=44.41 E-value=14 Score=25.93 Aligned_cols=12 Identities=33% Similarity=0.741 Sum_probs=9.9
Q ss_pred cceecChHHHHH
Q 008666 42 KSYHCSPKCFSD 53 (557)
Q Consensus 42 ~~~fc~~~cf~~ 53 (557)
.-.|||+.|...
T Consensus 31 ~~~FCS~~C~~~ 42 (43)
T PF06467_consen 31 MKQFCSQSCLSS 42 (43)
T ss_dssp TSCCSSHHHHHH
T ss_pred ccChhCHHHHhh
Confidence 467999999875
No 44
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=44.35 E-value=12 Score=27.94 Aligned_cols=19 Identities=26% Similarity=0.530 Sum_probs=14.4
Q ss_pred ccCCCCCcceecChHHHHH
Q 008666 35 KAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 35 ~~~~~~~~~~fc~~~cf~~ 53 (557)
+..|.....||||++|-..
T Consensus 20 ~~Ai~~dGk~YCS~aCA~g 38 (52)
T PF02069_consen 20 EEAIQKDGKYYCSEACANG 38 (52)
T ss_dssp TTSEESSS-EESSHHHHHT
T ss_pred hHhHHhCCEeeecHHHhcc
Confidence 5667677899999999765
No 45
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.36 E-value=15 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=16.4
Q ss_pred ccccchhhccCCC---CCcceecChHHHH
Q 008666 27 TLQCLGCVKAKIP---VAKSYHCSPKCFS 52 (557)
Q Consensus 27 ~l~c~~c~~~~~~---~~~~~fc~~~cf~ 52 (557)
+..||+|-|.-.- -...-|||+-|--
T Consensus 7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCkl 35 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFRPFCSKRCKL 35 (65)
T ss_pred cccCCCCCCcccccccCCcCcchhHhhhh
Confidence 4668888765331 1234599999953
No 46
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.96 E-value=12 Score=33.02 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.6
Q ss_pred ccccccCCCcccccchhh
Q 008666 17 VCSVHPSEQATLQCLGCV 34 (557)
Q Consensus 17 ~c~~~~~~~~~l~c~~c~ 34 (557)
-| .+|++.+-+|||+|-
T Consensus 30 fc-skcgeati~qcp~cs 46 (160)
T COG4306 30 FC-SKCGEATITQCPICS 46 (160)
T ss_pred HH-hhhchHHHhcCCccC
Confidence 37 688888779999994
No 47
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=30.55 E-value=46 Score=33.25 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccch
Q 008666 236 AYRRQNLLREIIGYRADIVCLQEVQN 261 (557)
Q Consensus 236 ~~R~~~i~~eI~~~~aDIIcLQEV~~ 261 (557)
..|...|++.-....+.||||||.+.
T Consensus 99 h~r~kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 99 HDRLKAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHHHHHhcCccEEEeehhhc
Confidence 45667777777788999999999965
No 48
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=28.97 E-value=23 Score=26.97 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=19.0
Q ss_pred cccchhhccCCCCCcceecChHHHHHhHHHHH
Q 008666 28 LQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHR 59 (557)
Q Consensus 28 l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk 59 (557)
-.|++|-|.-=+ .--|||.+|-+--=++.|
T Consensus 9 ~HC~VCg~aIp~--de~~CSe~C~eil~ker~ 38 (64)
T COG4068 9 RHCVVCGKAIPP--DEQVCSEECGEILNKERK 38 (64)
T ss_pred ccccccCCcCCC--ccchHHHHHHHHHHHHHH
Confidence 458888665333 567999999854333333
No 49
>PHA02546 47 endonuclease subunit; Provisional
Probab=26.53 E-value=1.1e+02 Score=31.90 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=27.6
Q ss_pred eEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCC
Q 008666 370 LLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSV 419 (557)
Q Consensus 370 ~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~ 419 (557)
.+.+.-.||.........+-.|...+.+.++...+..-.-||++||+=..
T Consensus 3 ilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~ 52 (340)
T PHA02546 3 ILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDV 52 (340)
T ss_pred EEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCC
Confidence 46788889864433222333344444444444333333468999998544
No 50
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=26.42 E-value=1e+02 Score=29.25 Aligned_cols=51 Identities=16% Similarity=0.043 Sum_probs=26.0
Q ss_pred eEEEEEeccccCcCCcc---cHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCC
Q 008666 370 LLCVANTHVNVHQELKD---VKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP 420 (557)
Q Consensus 370 ~l~V~NTHL~~~p~~~~---vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p 420 (557)
.+.+.-+||........ .+..+...+.+.++...+..-.-+|++|||=...
T Consensus 2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~ 55 (223)
T cd00840 2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSN 55 (223)
T ss_pred eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCC
Confidence 36677889854322111 1333444444444433222222499999997643
No 51
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=24.57 E-value=38 Score=27.40 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=10.4
Q ss_pred ceecChHHHHHh
Q 008666 43 SYHCSPKCFSDA 54 (557)
Q Consensus 43 ~~fc~~~cf~~~ 54 (557)
+.|||..||+.+
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 479999999975
No 52
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=24.52 E-value=68 Score=36.22 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.9
Q ss_pred CCCCCcceeeEEEEEe
Q 008666 537 EWSSDHIALLAEFRCK 552 (557)
Q Consensus 537 ~~pSDH~pl~aef~~~ 552 (557)
...|||.||.|.|.++
T Consensus 577 i~~SDHRPV~A~F~v~ 592 (621)
T PLN03191 577 IRLSDHRPVSSMFLVE 592 (621)
T ss_pred cccCCchhcceEEEEE
Confidence 3579999999999886
No 53
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=24.15 E-value=36 Score=24.47 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=8.7
Q ss_pred ceecChHHHHH
Q 008666 43 SYHCSPKCFSD 53 (557)
Q Consensus 43 ~~fc~~~cf~~ 53 (557)
=+|||++|-+.
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 47999999653
No 54
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=23.72 E-value=1.3e+02 Score=29.55 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=25.1
Q ss_pred EEEEEeccccCcC-----CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCC
Q 008666 371 LCVANTHVNVHQE-----LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSV 419 (557)
Q Consensus 371 l~V~NTHL~~~p~-----~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~ 419 (557)
+.+.-.||...+. .......-++.+.+.++++.. ...-||++|||-..
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~-~~D~viiaGDl~~~ 54 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVA-PEDIVLIPGDISWA 54 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCC-CCCEEEEcCCCccC
Confidence 5677789876442 222112233334444444432 22358999999743
No 55
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=22.29 E-value=1.7e+02 Score=30.15 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=25.1
Q ss_pred CcceEEEEEeccccCcCCcccHHHH-HHHHHHHHHHHhhcCC--CCEEEEccCCCCC
Q 008666 367 KRQLLCVANTHVNVHQELKDVKLWQ-VHTLLKGLEKIAASAD--IPMLVCGDFNSVP 420 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~~~~vR~~Q-~~~L~~~l~~~~~~~~--~pvIl~GDFNs~p 420 (557)
....+++..+||.- .+..+ ++.++...+....+.. .-+|+||+|.+.|
T Consensus 27 ~~~~VilSDV~LD~------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p 77 (291)
T PTZ00235 27 RHNWIIMHDVYLDS------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLK 77 (291)
T ss_pred ceEEEEEEeeccCC------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCc
Confidence 34456666777732 23322 3333333322111123 3469999999998
No 56
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.16 E-value=1.1e+02 Score=27.48 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=29.0
Q ss_pred cceEEEEEeccccCcCCccc-HHHHHHHHHHHHHHHhh-cCC---------CCEEEEccCCCCCC
Q 008666 368 RQLLCVANTHVNVHQELKDV-KLWQVHTLLKGLEKIAA-SAD---------IPMLVCGDFNSVPG 421 (557)
Q Consensus 368 ~~~l~V~NTHL~~~p~~~~v-R~~Q~~~L~~~l~~~~~-~~~---------~pvIl~GDFNs~p~ 421 (557)
+..++.++.|+..+-..... |..-...+.+.+.-... ... .-||..||+|....
T Consensus 58 ~~~~~~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~ 122 (145)
T KOG0565|consen 58 QTSFCFVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLS 122 (145)
T ss_pred CceEEEEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeec
Confidence 34699999999876543333 33223333222211100 011 24789999997554
No 57
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=21.70 E-value=41 Score=37.15 Aligned_cols=25 Identities=36% Similarity=0.858 Sum_probs=19.3
Q ss_pred ccccccCCCcccccchhhccCCCCCcceecCh
Q 008666 17 VCSVHPSEQATLQCLGCVKAKIPVAKSYHCSP 48 (557)
Q Consensus 17 ~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~ 48 (557)
.| .+|.+ |+|+.|+...|. +|||..
T Consensus 7 fC-~~C~~---irc~~c~~~Ei~---~~yCp~ 31 (483)
T PF05502_consen 7 FC-EHCHK---IRCPRCVSEEID---SYYCPN 31 (483)
T ss_pred ec-ccccc---cCChhhcccccc---eeECcc
Confidence 46 67764 779999999887 889864
No 58
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=20.10 E-value=95 Score=30.55 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=30.3
Q ss_pred ceEEEEEeccccCcC----CcccHHHHHHHHHHHHHHHhhcC-CCCEEEEccCCC
Q 008666 369 QLLCVANTHVNVHQE----LKDVKLWQVHTLLKGLEKIAASA-DIPMLVCGDFNS 418 (557)
Q Consensus 369 ~~l~V~NTHL~~~p~----~~~vR~~Q~~~L~~~l~~~~~~~-~~pvIl~GDFNs 418 (557)
+.++|+-+||..... .-.+-..|....++.+.++.... -.-+|++||+-.
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h 70 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKH 70 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCcccc
Confidence 468899999965331 11123345556666666554332 246999999863
Done!