Query 008666
Match_columns 557
No_of_seqs 420 out of 1995
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 7.9E-66 2.7E-70 544.1 26.8 345 172-554 8-384 (398)
2 4b8c_D Glucose-repressible alc 100.0 1E-49 3.4E-54 454.4 6.6 316 204-554 392-720 (727)
3 3l1w_A Uncharacterized protein 100.0 6.8E-31 2.3E-35 260.6 24.5 249 207-554 1-254 (257)
4 3g6s_A Putative endonuclease/e 100.0 9.9E-31 3.4E-35 261.1 24.1 257 205-553 2-262 (267)
5 3mpr_A Putative endonuclease/e 100.0 1.5E-30 5.2E-35 265.0 21.6 271 203-552 3-290 (298)
6 4f1h_A Tyrosyl-DNA phosphodies 100.0 6.1E-30 2.1E-34 248.0 20.1 248 205-550 2-249 (250)
7 4gz1_A Tyrosyl-DNA phosphodies 100.0 9.2E-30 3.2E-34 249.8 20.5 247 203-551 6-254 (256)
8 4fva_A 5'-tyrosyl-DNA phosphod 100.0 4.3E-28 1.5E-32 238.1 25.2 237 202-550 9-255 (256)
9 4gew_A 5'-tyrosyl-DNA phosphod 100.0 5.1E-28 1.8E-32 253.7 24.8 236 202-550 115-361 (362)
10 1zwx_A SMCL, sphingomyelinase- 100.0 4.5E-28 1.5E-32 245.9 18.2 188 203-430 7-210 (301)
11 3teb_A Endonuclease/exonucleas 100.0 1.1E-27 3.8E-32 237.7 19.9 246 205-551 2-266 (266)
12 3i41_A Beta-hemolysin; beta to 99.9 9.4E-27 3.2E-31 239.5 17.1 191 202-430 25-229 (317)
13 2ddr_A Sphingomyelin phosphodi 99.9 2E-25 6.8E-30 226.7 19.9 190 203-430 6-216 (306)
14 1ako_A Exonuclease III; AP-end 99.9 4.2E-24 1.4E-28 212.1 18.1 156 207-425 1-161 (268)
15 2jc4_A Exodeoxyribonuclease II 99.9 8.5E-24 2.9E-28 208.4 19.4 149 207-422 1-153 (256)
16 2jc5_A Exodeoxyribonuclease; h 99.9 8.7E-23 3E-27 201.5 18.5 149 207-422 2-156 (259)
17 1vyb_A ORF2 contains A reverse 99.9 3.1E-22 1.1E-26 194.8 18.5 147 204-422 5-152 (238)
18 2o3h_A DNA-(apurinic or apyrim 99.9 9.5E-22 3.2E-26 197.8 19.1 154 202-421 24-183 (285)
19 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 1.4E-21 5E-26 192.9 18.9 148 207-422 2-153 (257)
20 3g91_A MTH0212, exodeoxyribonu 99.9 3.8E-21 1.3E-25 191.6 18.4 242 206-551 3-257 (265)
21 1hd7_A DNA-(apurinic or apyrim 99.9 4.9E-21 1.7E-25 196.7 19.1 156 202-422 57-217 (318)
22 2j63_A AP-endonuclease; base e 99.9 4.1E-21 1.4E-25 206.9 17.5 82 203-307 146-231 (467)
23 2a40_B Deoxyribonuclease-1; WA 99.9 8.9E-21 3E-25 188.9 17.8 171 207-427 1-183 (260)
24 1wdu_A TRAS1 ORF2P; four-layer 99.8 4.5E-20 1.5E-24 181.8 17.9 145 203-421 16-160 (245)
25 2imq_X Salivary nitrophorin; f 99.7 6.7E-19 2.3E-23 178.1 7.0 172 204-431 6-190 (282)
26 2ei9_A Non-LTR retrotransposon 99.7 4.6E-17 1.6E-21 160.7 16.5 214 206-554 7-222 (240)
27 1sr4_B CDT B, cytolethal diste 99.7 2.7E-16 9.2E-21 155.3 15.1 166 205-429 3-190 (261)
28 2f1n_A CDT B, cytolethal diste 99.7 1.2E-16 4.1E-21 156.1 11.7 164 203-429 12-199 (262)
29 1i9z_A Synaptojanin, phosphati 99.6 2.7E-14 9.3E-19 147.9 16.5 173 204-431 24-226 (347)
30 2xsw_A 72 kDa inositol polypho 99.4 6.1E-12 2.1E-16 130.6 15.5 167 205-422 26-211 (357)
31 3mtc_A Type II inositol-1,4,5- 99.1 9.9E-09 3.4E-13 104.0 21.3 54 368-421 134-196 (313)
32 4a9c_A Phosphatidylinositol-3, 99.0 1.4E-08 4.7E-13 103.2 18.0 147 249-431 46-210 (316)
33 2dj8_A Protein CBFA2T1; zinc f 96.2 0.0035 1.2E-07 47.3 3.6 40 14-61 14-53 (60)
34 2d8q_A BLU protein, zinc finge 95.9 0.0077 2.6E-07 47.0 4.5 42 14-63 14-55 (70)
35 2jw6_A Deformed epidermal auto 95.9 0.0025 8.4E-08 46.6 1.5 42 11-60 5-46 (52)
36 2odd_A Protein CBFA2T1; MYND z 95.8 0.0061 2.1E-07 46.6 3.4 41 14-62 16-56 (64)
37 2od1_A Protein CBFA2T1; zinc f 95.7 0.0072 2.5E-07 45.6 3.4 39 15-61 13-51 (60)
38 3qwp_A SET and MYND domain-con 91.6 0.11 3.7E-06 54.9 3.9 42 14-63 46-89 (429)
39 3qww_A SET and MYND domain-con 91.1 0.1 3.6E-06 55.1 3.2 42 14-63 48-91 (433)
40 3n71_A Histone lysine methyltr 89.8 0.2 6.9E-06 53.7 4.1 41 15-63 49-91 (490)
41 2yqq_A Zinc finger HIT domain- 86.7 0.44 1.5E-05 35.1 2.9 30 15-53 12-41 (56)
42 1x4s_A Protein FON, zinc finge 82.6 0.42 1.4E-05 35.5 1.2 29 16-53 12-44 (59)
43 1lv3_A Hypothetical protein YA 54.6 4.7 0.00016 30.8 1.4 26 27-52 9-37 (68)
44 4dix_A Plectin-related protein 48.0 16 0.00056 33.9 4.2 20 131-150 65-84 (230)
45 2w0t_A Lethal(3)malignant brai 30.2 20 0.00069 24.7 1.4 28 27-54 6-37 (43)
46 3vhs_A ATPase wrnip1; zinc fin 30.1 11 0.00038 22.7 0.1 10 27-36 6-15 (29)
47 1jjd_A Metallothionein, SMTA; 28.4 20 0.00068 26.1 1.1 19 35-53 20-38 (55)
48 2d8v_A Zinc finger FYVE domain 20.0 34 0.0012 25.8 1.0 28 17-53 10-37 (67)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=7.9e-66 Score=544.14 Aligned_cols=345 Identities=36% Similarity=0.626 Sum_probs=282.0
Q ss_pred CCCCCCCCceeeeCCCCCCcCcccCCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCC
Q 008666 172 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 251 (557)
Q Consensus 172 p~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~a 251 (557)
+.|+|+.|.||.+... .+..+...|||||||||++.|++.+.|+|||++.++|.+|++.|+++|..++|
T Consensus 8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p 76 (398)
T 3ngq_A 8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA 76 (398)
T ss_dssp ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence 5667789999998651 12224568999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCCcccC--CCCCCccceEeeeeccceeeeEeEEEEechhhccccccc
Q 008666 252 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYN--GNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAI 329 (557)
Q Consensus 252 DIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~~~~~--~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~ 329 (557)
||||||||+..++.+++.+.|..+||.++|..|++...+ .++...+|||||||+++|++++...++|++....
T Consensus 77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~----- 151 (398)
T 3ngq_A 77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA----- 151 (398)
T ss_dssp SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHH-----
T ss_pred CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCccc-----
Confidence 999999999988888889999999999999877543111 1123568999999999999999999999875432
Q ss_pred Cchhhhhhhhhhcc-cCcEEEEEEEeeeecCCCC----CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh
Q 008666 330 LPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGA----DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA 404 (557)
Q Consensus 330 ~~~~~~~~~~~R~~-~~~val~~~Le~k~~~~~~----~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~ 404 (557)
++..++.+++|++ ++|||++++|+.+...... ....+++.|+|+||||+|+|...++|+.|+..|++.|+++..
T Consensus 152 -~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~ 230 (398)
T 3ngq_A 152 -NSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILE 230 (398)
T ss_dssp -TCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred -ccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2334678899998 5999999999986421000 001246789999999999999999999999999999998853
Q ss_pred c------------CCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCC----CC-------CCCcccCCCCc
Q 008666 405 S------------ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTIL----RP-------HTKLTHQLPLV 461 (557)
Q Consensus 405 ~------------~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~~~~----~~-------~~~l~~~~~l~ 461 (557)
+ .+.|+|||||||+.|+|++|++|++|.++.+|+||....|+.. .+ ...+.|+|+|.
T Consensus 231 ~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~ 310 (398)
T 3ngq_A 231 KASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLK 310 (398)
T ss_dssp C-------------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEE
T ss_pred HhhcccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCcccc
Confidence 2 3579999999999999999999999999999999986554431 11 13588999999
Q ss_pred chhhhhhhhccCCccccccccCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCChhhhc--cCCCCCCCCCC
Q 008666 462 SAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLR--KDTALPSPEWS 539 (557)
Q Consensus 462 Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~~~~~--~~~~lP~~~~p 539 (557)
|||.. ++|.||||+.+|.++||||||+.+.|.|.++++.++++++. +..||||..+|
T Consensus 311 SAy~~---------------------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~P 369 (398)
T 3ngq_A 311 SAYEN---------------------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIP 369 (398)
T ss_dssp ETTTT---------------------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBC
T ss_pred ccccC---------------------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCC
Confidence 99963 37899999999999999999999889999999888888875 68999999999
Q ss_pred CCcceeeEEEEEecc
Q 008666 540 SDHIALLAEFRCKPR 554 (557)
Q Consensus 540 SDH~pl~aef~~~~~ 554 (557)
|||+||+|||+|+++
T Consensus 370 SDHi~l~a~f~~~~~ 384 (398)
T 3ngq_A 370 SDHFSLLTQLELHPP 384 (398)
T ss_dssp SSBCCEEEEEEECCC
T ss_pred CcchheeEEEEEccC
Confidence 999999999999875
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-49 Score=454.43 Aligned_cols=316 Identities=37% Similarity=0.669 Sum_probs=102.2
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEe
Q 008666 204 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 283 (557)
Q Consensus 204 ~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~ 283 (557)
...++++||||+++.|++...|+|||++.+.|.+|+..|+++|..++|||||||||+.+++.+++.+.|+++||.+++..
T Consensus 392 ~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~ 471 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHA 471 (727)
T ss_dssp ----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC--
T ss_pred ccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEec
Confidence 34789999999999999999999999999999999999999999999999999999999998988999999999999977
Q ss_pred cCCccc--CCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcc-cCcEEEEEEEeeeecCC
Q 008666 284 KTNEVY--NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQ 360 (557)
Q Consensus 284 k~~~~~--~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~-~~~val~~~Le~k~~~~ 360 (557)
+.+..+ ..+....+|||||||++||++++...+.|...+..... + ....+.+.|.+ ++++++++.|+.+.
T Consensus 472 ~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~r~~~~~~i~~~~~l~~~~--- 544 (727)
T 4b8c_D 472 KARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKK-F---QRTEDYLNRAMNKDNVALFLKLQHIP--- 544 (727)
T ss_dssp --------------CCCCEEEC----------------------------------------------------------
T ss_pred cCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchh-h---cccHHHHhhcccCCcEEEEEEEeecC---
Confidence 654321 12234678999999999999999999988754332111 0 01123455655 67889999888742
Q ss_pred CCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhc----------CCCCEEEEccCCCCCCChhhhhhhc
Q 008666 361 GADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS----------ADIPMLVCGDFNSVPGSAPHALLAM 430 (557)
Q Consensus 361 ~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~----------~~~pvIl~GDFNs~p~s~~~~lL~~ 430 (557)
.++.|+|+||||+|.|...++|+.|+..|+++|+++... .+.|+|||||||+.|++++|++|+.
T Consensus 545 ------~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~l~~ 618 (727)
T 4b8c_D 545 ------SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINT 618 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEeeec
Confidence 467899999999999988899999999999999887432 3679999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCcccceeEEEeeC
Q 008666 431 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTA 510 (557)
Q Consensus 431 g~v~~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~ 510 (557)
|.++ .|+||....++.+.. ..+.|.+.+.+||.. .+++.||+|+++|.++||||||++
T Consensus 619 ~~v~-~~~d~~~~~~~~~~~-~~~~~~~~l~say~~--------------------~~~~~~T~~~~~~~~~LDyI~~S~ 676 (727)
T 4b8c_D 619 GRVQ-IHQEGNGRDFGYMSE-KNFSHNLALKSSYNC--------------------IGELPFTNFTPSFTDVIDYIWFST 676 (727)
T ss_dssp -----------------------------------------------------------CCCSBCCSSCCBCC-------
T ss_pred CCcC-cchhhcccccccccc-ccccccccccchhhc--------------------CCCCccccccCccCCeeeeEEEcC
Confidence 9888 789998777776554 567889999999874 357889999999999999999999
Q ss_pred CCcceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEEecc
Q 008666 511 DSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPR 554 (557)
Q Consensus 511 ~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~~~ 554 (557)
+.+.+.++++.++++.+.++.++|+..+||||+||+|+|+|+++
T Consensus 677 ~~l~~~~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~~ 720 (727)
T 4b8c_D 677 HALRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMKT 720 (727)
T ss_dssp ----------CCCHHHHTTCSSSSBTTBCSSBCC----------
T ss_pred CceeEeeccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEecC
Confidence 88889999999999999999999999999999999999999764
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.98 E-value=6.8e-31 Score=260.63 Aligned_cols=249 Identities=19% Similarity=0.305 Sum_probs=167.4
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
||||||||+.... +.....|.+|++.|+++|..++|||||||||+..++.++ .. ..||..+...+..
T Consensus 1 lrv~t~Ni~~~~~---------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~~---~l~y~~~~~~~~~ 67 (257)
T 3l1w_A 1 MKIATYNVRVDTE---------YDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDL-KA---YTTFTCLSAEREG 67 (257)
T ss_dssp CEEEEEECCCCCG---------GGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHH-HH---HSSSEEEEEESSS
T ss_pred CEEEEEEeccCCC---------CccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-Hh---cCCCcEEEecccC
Confidence 6999999996431 234577999999999999999999999999998766543 33 3489766555432
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
. ...+|+|||||+++|++++...+.+.... . .++..+.... .+.++++.++.+ .
T Consensus 68 ~------~~~~g~ail~r~~~~~~~~~~~~~l~~~~-----~-~~~~~~~~~~-----~r~~~~~~~~~~---------~ 121 (257)
T 3l1w_A 68 D------GQGEGLAILYNEQKVQAIDTGYFWLSETP-----Q-QPSIHPEAGC-----PRIALWGLFKET---------T 121 (257)
T ss_dssp S------SCSCEEEEEECTTTEEEEEEEEEESSSST-----T-SSCCCTTCSS-----CCEEEEEEEEET---------T
T ss_pred C------CCCceEEEEEEcceEEEEecCeEECcCCC-----C-cccccccccc-----cceeEEEEEEEc---------C
Confidence 1 24579999999999999999888765321 0 0111111122 335677777762 2
Q ss_pred CcceEEEEEeccccCcCCcccHHHHHHHHHHHHHH-HhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCC
Q 008666 367 KRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK-IAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPL 445 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~-~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~ 445 (557)
.++.+.|+||||.+. ....|..|+..|++.+++ +.. + |+|||||||+.|++..+++|..|..+
T Consensus 122 ~g~~~~v~~~Hl~~~--~~~~r~~q~~~l~~~i~~~~~~--~-pvil~GDfN~~~~~~~~~~l~~~l~d----------- 185 (257)
T 3l1w_A 122 QNTPFLVINVHLDHI--SAHARLAGMTVILEELHDKIAQ--Y-PTLLMGDFNAESGEEVHQLVQKKFQD----------- 185 (257)
T ss_dssp CSSCEEEEEEECCSS--CHHHHHHHHHHHHHHTHHHHHH--S-CEEEEEECCCCTTSHHHHHHTTTCEE-----------
T ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHHHHcCC--C-CEEEEeeCCCCCCcHHHHHhhhhccc-----------
Confidence 356899999999765 346899999999999984 433 3 99999999999999999988765322
Q ss_pred CCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC----CcccceeEEEeeCCCcceeeeccc
Q 008666 446 TILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR----DFIGTLDYIFYTADSLSVESLLEL 521 (557)
Q Consensus 446 ~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~----~f~~~LDyIf~s~~~l~v~~~~~~ 521 (557)
++..... .....+|..+.. ....+|||||+ ++ +.+.....+
T Consensus 186 -----------------~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~riD~i~~-~~-~~~~~~~v~ 230 (257)
T 3l1w_A 186 -----------------SKNLATH----------------YGPRGTFQNFTYTKPWAELEEIDYIYV-KG-WQVQQTASL 230 (257)
T ss_dssp -----------------GGGTSEE----------------ESCSCCBCTTCTTCCGGGCBCCEEEEE-ES-EEEEEEEEC
T ss_pred -----------------hhhhhcc----------------cCCCCcccCCcccCCCCCCCceeEEEE-CC-cEEEEEEEe
Confidence 1111000 001112222221 12379999999 44 776655433
Q ss_pred CChhhhccCCCCCCCCCCCCcceeeEEEEEecc
Q 008666 522 LDEDSLRKDTALPSPEWSSDHIALLAEFRCKPR 554 (557)
Q Consensus 522 ~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~~~ 554 (557)
.+. +....+|||.||+++|++++.
T Consensus 231 ~~~---------~~~~~~SDH~pv~~~l~~~~~ 254 (257)
T 3l1w_A 231 TDS---------IDGRFPSDHFPLEAEVAGENL 254 (257)
T ss_dssp CCC---------BTTBCSSSBCCEEEEEEEC--
T ss_pred ccC---------cCCcccCCcceEEEEEEEEeE
Confidence 221 123468999999999999753
No 4
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.97 E-value=9.9e-31 Score=261.13 Aligned_cols=257 Identities=20% Similarity=0.298 Sum_probs=174.2
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEec
Q 008666 205 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 284 (557)
Q Consensus 205 ~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k 284 (557)
.+||||||||+..... .....|..|++.|++.|..++|||||||||+.+++.. |...| .+|..+...+
T Consensus 2 ~~l~v~t~Ni~~~~~~---------~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l--~~y~~~~~~~ 69 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQ---------DSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQD-LRAGL--PEYDGIGVGR 69 (267)
T ss_dssp EEEEEEEEECCCCCGG---------GGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHC--TTEEEECCCT
T ss_pred CcEEEEEEEeccCCCC---------ccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHhc--cCCcEEEecC
Confidence 4699999999964311 2356799999999999999999999999999776544 34444 3676644332
Q ss_pred CCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCch-hhhhhhhhhcccCcEEEEEEEeeeecCCCCC
Q 008666 285 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPS-AQKKNALNRLVKDNVALIVVLEAKFSNQGAD 363 (557)
Q Consensus 285 ~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~R~~~~~val~~~Le~k~~~~~~~ 363 (557)
.. .....+|+|||||++||++++...+.+.... . .++ ..+..... ++++++.++.+
T Consensus 70 ~~-----~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~-----~-~~~~~~~~~~~~-----R~~~~~~~~~~------- 126 (267)
T 3g6s_A 70 DD-----GKTAGEYAPLFYRKDKYEVLDSNTFWLAENP-----D-SVGMMGWDAVCV-----RIATWAKFKDK------- 126 (267)
T ss_dssp TT-----SSSSSCBCCEEEETTTEEEEEEEEEESSSCT-----T-STTCCCTTCSSC-----CEEEEEEEEET-------
T ss_pred CC-----CCcCCceeEEEEEccceEEEecccEecCCCC-----C-ccccccccccCc-----ceEEEEEEEEc-------
Confidence 21 1123467999999999999999887765321 0 011 11122233 35678888863
Q ss_pred CCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCC
Q 008666 364 TPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVD 443 (557)
Q Consensus 364 ~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~ 443 (557)
..++.|+|+||||.+.. ...|..|+..|++.|+++.. +.|+|||||||+.|.+..|+.|....
T Consensus 127 --~~~~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~l~~~~~--~~pvIl~GDfN~~~~~~~~~~l~~~~----------- 189 (267)
T 3g6s_A 127 --ATGKIFMAVNTHFDHVG--EEARRQSALLIIRKIKEIVG--ERPAVVTGDFNVTDASDAYETITTNE----------- 189 (267)
T ss_dssp --TTCCEEEEEEEECCSSC--HHHHHHHHHHHHHHHHHHTT--TSCEEEEEECSSCTTSHHHHHHHSSS-----------
T ss_pred --CCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHHHHHhcC--CCCEEEEeECCCCCCCHHHHHhhcCC-----------
Confidence 24678999999997643 57899999999999988753 67999999999999999999987531
Q ss_pred CCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC---CcccceeEEEeeCCCcceeeecc
Q 008666 444 PLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTADSLSVESLLE 520 (557)
Q Consensus 444 ~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~---~f~~~LDyIf~s~~~l~v~~~~~ 520 (557)
..|.++|..... + .....+|+.+.+ ....+|||||++++ +.+.....
T Consensus 190 --------------~~l~d~~~~~~~-----~----------~~~~~T~~~~~~~~~~~~~riD~I~~s~~-~~~~~~~v 239 (267)
T 3g6s_A 190 --------------FVMKDAYKTAAR-----V----------TGVDYTFHDFARIPAEDCEKIDFIFVTPQ-VLVKSCEI 239 (267)
T ss_dssp --------------SCCEEHHHHCSE-----E----------EECSCSBCTTTTSCGGGCCCCEEEEECTT-SEEEEEEE
T ss_pred --------------cchhhhHhhhcc-----c----------cCCCCCEeCCCCCCCCCCCcEeEEEeCCC-ceEEEEEE
Confidence 013445443210 0 011234444432 24579999999987 77665533
Q ss_pred cCChhhhccCCCCCCCCCCCCcceeeEEEEEec
Q 008666 521 LLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP 553 (557)
Q Consensus 521 ~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~~ 553 (557)
+... ... ++|||+||+|++..-+
T Consensus 240 ~~~~---------~~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 240 PAEV---------PEA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp CCCC---------SSS-CCCSBCCEEEEEEEC-
T ss_pred ecCC---------CCC-CCCCcccEEEEEEecc
Confidence 3210 013 6899999999998744
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.5e-30 Score=265.03 Aligned_cols=271 Identities=18% Similarity=0.218 Sum_probs=174.3
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 282 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~ 282 (557)
.+.+||||||||+....... .....|..|++.|++.|..++|||||||||+.+++.. |...|. +|..+..
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~~-------~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~-l~~~l~--~y~~~~~ 72 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSDS-------ARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKD-MKEALP--GYDYIGV 72 (298)
T ss_dssp CCEEEEEEEEECCCCCHHHH-------HHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHH-HHHHST--TEEEECC
T ss_pred CCCcEEEEEEEeccCCCCCc-------ccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-HHHhCC--CCcEEEE
Confidence 35689999999985421100 1245799999999999999999999999999776544 345553 5654433
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
... ......+++|||||++||++++...+.+.... . .++..+....+| +++++.|+.+
T Consensus 73 ~~~-----~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p-----~-~~~~~~~~~~~R-----~~~~~~~~~~------ 130 (298)
T 3mpr_A 73 GRD-----DGKDKGEHSAIFYRTDKFDIVEKGDFWLSETP-----D-VPSKGWDAVLPR-----ICSWGHFKCK------ 130 (298)
T ss_dssp CTT-----TSSSSSCBCCEEEETTTEEEEEEEEEESSSST-----T-SSCCCTTCSSCC-----EEEEEEEEET------
T ss_pred ecC-----CCCCCCceeEEEEecCceEEEeccEEEccCCC-----C-ccCcccccccCc-----eeEEEEEEEc------
Confidence 221 01123457999999999999999887665321 0 011112222333 4677888753
Q ss_pred CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCC
Q 008666 363 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAV 442 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~ 442 (557)
..++.|+|+||||.+. ....|..|+..|++.++++....+.|+|||||||+.|.+..|+.|..+.
T Consensus 131 ---~~g~~~~v~~~Hl~~~--~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~g---------- 195 (298)
T 3mpr_A 131 ---DTGFEFLFFNLHMDHI--GKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKG---------- 195 (298)
T ss_dssp ---TTCCEEEEEEEECCSS--CHHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTS----------
T ss_pred ---CCCCEEEEEEecCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHHhcCC----------
Confidence 2467899999999643 3578999999999999887532468999999999999999999987541
Q ss_pred CCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC--CcccceeEEEeeCCCcceeeecc
Q 008666 443 DPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR--DFIGTLDYIFYTADSLSVESLLE 520 (557)
Q Consensus 443 ~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~--~f~~~LDyIf~s~~~l~v~~~~~ 520 (557)
.|.+++..... + ....++|+.+.. ....+|||||++++ +.+.....
T Consensus 196 ----------------~l~D~~~~~~~-----~----------~~~~~T~~~~~~~~~~~~rID~Il~s~~-~~v~~~~v 243 (298)
T 3mpr_A 196 ----------------VLCDSYEKCDY-----R----------YALNGTFNNFDPNSFTESRIDHIFVSPS-FHVKRYGV 243 (298)
T ss_dssp ----------------SSEEHHHHCSE-----E----------ECSSCSBCTTCTTCCCSCCCEEEEECTT-SEEEEEEE
T ss_pred ----------------cchhhHhhhcc-----c----------CCCCCCccCCCCCCCCCceEEEEEeCCC-eeEEEEEE
Confidence 12334332110 0 011234444432 25789999999987 77766543
Q ss_pred cCChhh-------hccCCCCCC--------CCCCCCcceeeEEEEEe
Q 008666 521 LLDEDS-------LRKDTALPS--------PEWSSDHIALLAEFRCK 552 (557)
Q Consensus 521 ~~~~~~-------~~~~~~lP~--------~~~pSDH~pl~aef~~~ 552 (557)
+.+... ......+|. ...+|||.||++++...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 244 LTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFD 290 (298)
T ss_dssp CCCCEEEECC----------------CCEEEECSSSBCCEEEEEEEC
T ss_pred ecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecc
Confidence 322111 001111221 12579999999998753
No 6
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.97 E-value=6.1e-30 Score=247.98 Aligned_cols=248 Identities=16% Similarity=0.168 Sum_probs=153.8
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEec
Q 008666 205 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 284 (557)
Q Consensus 205 ~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k 284 (557)
.+||||||||+... ..+|..|++.|++.|..++|||||||||..+++..+ ....++...+...
T Consensus 2 ~~l~v~t~Ni~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l----~~~~~~~~~~~~~ 64 (250)
T 4f1h_A 2 SKLSIISWNVDGLD-------------TLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYL----KKRAVSYLFFEGS 64 (250)
T ss_dssp CCEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHH----HHHCTTEEEEESC
T ss_pred CeEEEEEEEeCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH----HHhccCceeeccc
Confidence 47999999998421 345889999999999999999999999987644322 2234444444332
Q ss_pred CCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCC
Q 008666 285 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 364 (557)
Q Consensus 285 ~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~ 364 (557)
. ...|.+++++++++++++...+.+.... . ...++.+.+..
T Consensus 65 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~~~~--------- 105 (250)
T 4f1h_A 65 D---------DGYFTGIMLRKSRVKFLESEIICFPTTQ----------------M-----MRNLLIAQVTF--------- 105 (250)
T ss_dssp S---------SSSEEEEEEETTTCEEEEEEEEECTTCS----------------S-----CCEEEEEEEEE---------
T ss_pred c---------cccCceeEEeeccccceecccccccCcc----------------c-----cceEEEEEEec---------
Confidence 2 2247788899999999988776543210 0 11123333332
Q ss_pred CCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCC
Q 008666 365 PGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDP 444 (557)
Q Consensus 365 ~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~ 444 (557)
.+..+.|+||||.+.+.....|..|+..+++.|++.. .+.|+|||||||+.+.+..+..+....
T Consensus 106 --~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~~--~~~pvIl~GDfN~~~~~~~~~~~~~~~------------ 169 (250)
T 4f1h_A 106 --SGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEAP--EDAIVIFAGDTNLRDAEVANVGGLPAG------------ 169 (250)
T ss_dssp --TTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSC--TTEEEEEEEECCCCHHHHHTTTSSCTT------------
T ss_pred --CCcEEEEeccccccccccHHHHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCcchhhhhhcccc------------
Confidence 3678999999999888777889999999998887653 357999999999887655443322110
Q ss_pred CCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCCh
Q 008666 445 LTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDE 524 (557)
Q Consensus 445 ~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~ 524 (557)
+.+++..+... ...+ ...+ .....++.+......+|||||+++... ...+.. ..
T Consensus 170 ---------------~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~riD~I~~~~~~~-~~~~~~--~~ 223 (250)
T 4f1h_A 170 ---------------VCDVWEQLGKQ-EHCR-----YTWD--TKANSNKTVPYVSRCRFDRIFLRSAKT-APPVTP--DH 223 (250)
T ss_dssp ---------------EEEHHHHTTCC-GGGC-----CSEE--TTTCCSSCCSSCCEECCEEEEEECCTT-SCCCEE--EE
T ss_pred ---------------chHHHHHhcCC-ccCC-----cccc--cccCCCCCcCCCCCccEEEEEEeCccc-ccceee--eE
Confidence 11222221100 0000 0000 011123333344567899999997622 111100 00
Q ss_pred hhhccCCCCCCCCCCCCcceeeEEEE
Q 008666 525 DSLRKDTALPSPEWSSDHIALLAEFR 550 (557)
Q Consensus 525 ~~~~~~~~lP~~~~pSDH~pl~aef~ 550 (557)
..+.....+|+..++|||+||+|+|+
T Consensus 224 ~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 224 MALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp EEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred EEEecccccCCCCCCCcccCEEEEEe
Confidence 11223345677889999999999996
No 7
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.97 E-value=9.2e-30 Score=249.78 Aligned_cols=247 Identities=18% Similarity=0.180 Sum_probs=154.7
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 282 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~ 282 (557)
+..+||||||||.... ..+|..|++.|++.|..++|||||||||..+++.. |.+..+.+.+.
T Consensus 6 ~~~~l~v~swNi~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-----l~~~~~~~~~~ 67 (256)
T 4gz1_A 6 DSSTISFITWNIDGLD-------------GCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAY-----LKKRAASYTII 67 (256)
T ss_dssp GGGEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-----HHHHCTTEEEE
T ss_pred CCCcEEEEEEEcCCCc-------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH-----HHhhcccccee
Confidence 4568999999998421 34589999999999999999999999998765432 33222222222
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
.... ...|++++++++++.++......+... . ....++.+.+..
T Consensus 68 ~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~~~~~------- 111 (256)
T 4gz1_A 68 TGNE--------EGYFTAILLKKGRVKFKSQEIIPFPNT----------------K-----MMRNLLCVNVSL------- 111 (256)
T ss_dssp ESCS--------SSSEEEEEEETTTEEEEEEEEEECTTC----------------S-----SCCEEEEEEEEE-------
T ss_pred eccc--------cCCceEEEEEeccccceecccccCCcc----------------c-----ccceEEEEEEEe-------
Confidence 2211 235899999999998887765443211 0 011123333333
Q ss_pred CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCC
Q 008666 363 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAV 442 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~ 442 (557)
.++.|.|+||||.+.+.....|..|+..+++.|++.. .+.|+|||||||+.|.+..+..+...
T Consensus 112 ----~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~~--~~~pvIl~GDfN~~~~~~~~~~~~~~----------- 174 (256)
T 4gz1_A 112 ----GGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAP--DSTTVIFAGDTNLRDQEVIKCGGLPD----------- 174 (256)
T ss_dssp ----TTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECCCCHHHHHHHTCSCT-----------
T ss_pred ----CCEEEEEEeecccccccchhhhhHHHHHHhhhhhhcc--CcceEEEeCccCCCcchhhhhhhccc-----------
Confidence 3678999999998887777889999999998887653 36799999999998776554433211
Q ss_pred CCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccCCcccceeEEEeeCCCc--ceeeecc
Q 008666 443 DPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSL--SVESLLE 520 (557)
Q Consensus 443 ~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l--~v~~~~~ 520 (557)
.+.+++...... ...+ ...+ .....++.+...+..||||||+++... .+..+ .
T Consensus 175 ----------------~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~-~ 229 (256)
T 4gz1_A 175 ----------------NVFDAWEFLGKP-KHCQ-----YTWD--TKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSL-D 229 (256)
T ss_dssp ----------------TEEEHHHHTTCC-GGGS-----CSEE--TTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEE-E
T ss_pred ----------------hhhhHHHHhcCC-CCCC-----cccc--cCCCCccccCCCCCccEEEEEEECCccceeeeEE-E
Confidence 011122211100 0000 0000 111122333455677999999997632 22222 1
Q ss_pred cCChhhhccCCCCCCCCCCCCcceeeEEEEE
Q 008666 521 LLDEDSLRKDTALPSPEWSSDHIALLAEFRC 551 (557)
Q Consensus 521 ~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~ 551 (557)
+.....++...++|||+||+|+|++
T Consensus 230 ------~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 230 ------LVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp ------EECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred ------EEeccccCCCCCCCccccEEEEEEE
Confidence 1123345667889999999999987
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.96 E-value=4.3e-28 Score=238.14 Aligned_cols=237 Identities=17% Similarity=0.144 Sum_probs=149.8
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEE
Q 008666 202 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 281 (557)
Q Consensus 202 ~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~ 281 (557)
.++.+||||||||... ...+|..|++.|++.|..++|||||||||...++..+ .. ..++...+
T Consensus 9 ~~~~~l~v~s~Ni~g~-------------~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l-~~---~~~~~~~~ 71 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGL-------------DGRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPI-DK---LQSLYKIY 71 (256)
T ss_dssp CTTCEEEEEEEECCTT-------------CCTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHH-HG---GGGTEEEE
T ss_pred CCCCEEEEEEEecCCC-------------CCcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHH-HH---hcCCceEe
Confidence 4566899999999742 1245899999999999999999999999987654332 22 23444433
Q ss_pred EecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCC
Q 008666 282 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 361 (557)
Q Consensus 282 ~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~ 361 (557)
..... ...|+||+++. ++++.....+.+.... ....++.+.++.
T Consensus 72 ~~~~~--------~~~g~~il~~~-~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~------ 115 (256)
T 4fva_A 72 YSNKG--------CQYYTAILVSK-MFDVEKHDVIHFQNSG---------------------MYRTLQILEGSI------ 115 (256)
T ss_dssp ESSTT--------SSSEEEEEEET-TCEEEEEEEEECTTCS---------------------SCCEEEEEEEEE------
T ss_pred ecCCC--------CCcceEEEEee-cccceecccccCCCCc---------------------ccceeEEEEEEe------
Confidence 33211 34699999875 5677766665543210 011234444443
Q ss_pred CCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh-cCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCC
Q 008666 362 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL 440 (557)
Q Consensus 362 ~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~-~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~ 440 (557)
.++.|.|+||||.+.......|..|+..+++.+..+.. ..+.|+|+|||||+.+.+..+.
T Consensus 116 -----~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~-------------- 176 (256)
T 4fva_A 116 -----GGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV-------------- 176 (256)
T ss_dssp -----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC--------------
T ss_pred -----CCeEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh--------------
Confidence 36789999999988776667888899888887776543 4568999999999876532110
Q ss_pred CCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccc---------ccCCcccceeEEEeeCC
Q 008666 441 AVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTH---------CTRDFIGTLDYIFYTAD 511 (557)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn---------~t~~f~~~LDyIf~s~~ 511 (557)
...+.++|..... ..+..||+ ....+..||||||++++
T Consensus 177 ----------------~~~~~d~~~~~~~-----------------~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~ 223 (256)
T 4fva_A 177 ----------------PDGVKDAWEAAGS-----------------DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP 223 (256)
T ss_dssp ----------------CTTCEEHHHHTTC-----------------CGGGCCSEETTTCCSSCSCCSCEECCEEEEEESS
T ss_pred ----------------hcchhhHHHHhCC-----------------CCCCCcccccccCcccccCCCCCcCeEEEEEcCC
Confidence 1123444443211 01122332 12334568999999987
Q ss_pred CcceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEE
Q 008666 512 SLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR 550 (557)
Q Consensus 512 ~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~ 550 (557)
+.+.....+.. +.+ .+...+||||+||+|+|.
T Consensus 224 -~~~~~~~~~~~-~~~-----~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 224 -LDKVKFTLEGR-QRI-----RSCLCFPSDHWAINATFF 255 (256)
T ss_dssp -CCEEEEEEECC-SCC-----TTTCSCSCSSCEEEEEEE
T ss_pred -ceeeEEEEEee-Eec-----CCCCCCcCcccCEEEEEc
Confidence 66654421111 111 123567999999999995
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.96 E-value=5.1e-28 Score=253.67 Aligned_cols=236 Identities=18% Similarity=0.148 Sum_probs=152.7
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEE
Q 008666 202 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 281 (557)
Q Consensus 202 ~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~ 281 (557)
.++..||||||||.+.. ..+|..|+..|++.|..++|||||||||....+.. +...+ .+|..++
T Consensus 115 ~~~~~lkVlSWNI~Gl~-------------~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~-l~~~~--~~y~~~~ 178 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLD-------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-IDKLQ--SLYKIYY 178 (362)
T ss_dssp TTTCEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-HHGGG--GTEEEEE
T ss_pred CCCCeEEEEEEEeCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHH-HHHhc--CCceEEe
Confidence 45678999999997421 23588999999999999999999999997765433 23322 2454443
Q ss_pred EecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCC
Q 008666 282 KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQG 361 (557)
Q Consensus 282 ~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~ 361 (557)
.... ...|+|||+|. ++++.....+.+... . ..+.++++.+..
T Consensus 179 ~~~~---------~~~G~aIlsk~-~i~~~~~~~~~~~~~----------------~-----~~r~~l~~~i~~------ 221 (362)
T 4gew_A 179 SNKG---------CQYYTAILVSK-MFDVEKHDVIHFQNS----------------G-----MYRTLQILEGSI------ 221 (362)
T ss_dssp SSTT---------SSSEEEEEEET-TEEEEEEEEEECTTC----------------S-----SCCEEEEEEEEE------
T ss_pred CCCC---------CCceEEEEEec-cCccccccccCCCCC----------------c-----ccceEEEEEEEE------
Confidence 3221 23599999885 566666655443211 0 112234455544
Q ss_pred CCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh-cCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCC
Q 008666 362 ADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL 440 (557)
Q Consensus 362 ~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~-~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~ 440 (557)
.+..|.|+||||.+.......|..|+..+++.+..+.. ..+.|+|||||||..|.+...
T Consensus 222 -----~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~--------------- 281 (362)
T 4gew_A 222 -----GGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR--------------- 281 (362)
T ss_dssp -----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC---------------
T ss_pred -----CCEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch---------------
Confidence 36789999999988776677899999999888877643 456899999999987753111
Q ss_pred CCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccc---------cCCcccceeEEEeeCC
Q 008666 441 AVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHC---------TRDFIGTLDYIFYTAD 511 (557)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~---------t~~f~~~LDyIf~s~~ 511 (557)
....|.++|..... .....||++ ..++..||||||+++.
T Consensus 282 ---------------~~~gl~Da~~~~~~-----------------~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~ 329 (362)
T 4gew_A 282 ---------------VPDGVKDAWEAAGS-----------------DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP 329 (362)
T ss_dssp ---------------CCTTCEEHHHHTTC-----------------CGGGCCSEETTTCTTSCCSSCCEECCEEEEEESS
T ss_pred ---------------hcchHHHHHHHhCC-----------------CCCCCcCcccccCcccccCCCCCcceEEEEEcCC
Confidence 01134455544321 112234442 1234569999999987
Q ss_pred CcceeeecccCChhhhccCCCC-CCCCCCCCcceeeEEEE
Q 008666 512 SLSVESLLELLDEDSLRKDTAL-PSPEWSSDHIALLAEFR 550 (557)
Q Consensus 512 ~l~v~~~~~~~~~~~~~~~~~l-P~~~~pSDH~pl~aef~ 550 (557)
+.+.....+.. ..+ +...+||||+||+|+|.
T Consensus 330 -l~~~~~~vi~~-------~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 330 -LDKVKFTLEGR-------QRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp -CCEEEEEEECC-------SCCTTTSSCSCSSCEEEEEEE
T ss_pred -cceeEEEEEee-------eecCCCCCCCCcccCEEEEEc
Confidence 66654421111 112 23568999999999995
No 10
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.95 E-value=4.5e-28 Score=245.86 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=124.6
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccCh--HHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhh-CCCeE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQA 279 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w--~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~gY~~ 279 (557)
.+..||||||||+... ...+ + .| +.|.+.|.++|...+|||||||||+.....+.+...|.. ++|..
T Consensus 7 ~~~~lrv~t~Ni~~~~---~~~~---~----~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~ 76 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFS---RNIY---P----NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQT 76 (301)
T ss_dssp CCCSCEEEEEEEEECC---TTTS---T----TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEEC
T ss_pred CCCceEEEEEECccCC---cccc---C----CCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccc
Confidence 4568999999999742 1111 1 24 789999999999999999999999865533334445543 44432
Q ss_pred EEEecCCccc-------CCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEE
Q 008666 280 LYKRKTNEVY-------NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVV 352 (557)
Q Consensus 280 ~~~~k~~~~~-------~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~ 352 (557)
.+..+....+ ........|+||| |||++++...+.|.... ...... .+.++.+.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~-----------~~~~~~-----~r~~~~~~ 137 (301)
T 1zwx_A 77 PVIGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGG-----------GADRLS-----NKGFAYVK 137 (301)
T ss_dssp CCTTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCC-----------GGGGGB-----CCEEEEEE
T ss_pred cccCCccccccccccccccccccCCCEEEE---ecCCcccceEEEecCCC-----------Cccccc-----CCCeEEEE
Confidence 2221110000 0011234699999 88999988777654210 001111 22356666
Q ss_pred EeeeecCCCCCCCCCcceEEEEEeccccCc------CCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhh
Q 008666 353 LEAKFSNQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHA 426 (557)
Q Consensus 353 Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p------~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~ 426 (557)
++. .++.|.|+||||.+.. .....|..|+..|.+.+++.....+.|+|||||||+.|++..|+
T Consensus 138 ~~~-----------~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~ 206 (301)
T 1zwx_A 138 IMK-----------NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYH 206 (301)
T ss_dssp EEE-----------TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHH
T ss_pred EEE-----------CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcHHHH
Confidence 665 3578999999997652 23467999999999999876323457999999999999999998
Q ss_pred hhhc
Q 008666 427 LLAM 430 (557)
Q Consensus 427 lL~~ 430 (557)
.|..
T Consensus 207 ~l~~ 210 (301)
T 1zwx_A 207 DMLK 210 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 11
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.95 E-value=1.1e-27 Score=237.69 Aligned_cols=246 Identities=17% Similarity=0.200 Sum_probs=155.1
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhh-------------HHHHhHHH
Q 008666 205 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH-------------FEEFFAPE 271 (557)
Q Consensus 205 ~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~-------------~~~~l~~~ 271 (557)
++||||||||+... ..++..|...|++.|..++|||||||||+... +...+...
T Consensus 2 ~~l~v~t~Ni~~~~-------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~ 68 (266)
T 3teb_A 2 NAMKILTVNVHAWL-------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLET 68 (266)
T ss_dssp -CEEEEEEECCTTC-------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHH
T ss_pred CceEEEEEeccccc-------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHH
Confidence 57999999998532 23477889999999999999999999996432 22334667
Q ss_pred HhhCC---CeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEE
Q 008666 272 LDKHG---YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVA 348 (557)
Q Consensus 272 L~~~g---Y~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~va 348 (557)
|.+.+ |...+..... +.....+|+||| +|+++++...+.+.... .. +. ...+.+
T Consensus 69 l~~~~~~~y~~~~~~~~~----~~~~~~~g~ail---sr~~~~~~~~~~~~~~~-----~~-~~----------~~~r~~ 125 (266)
T 3teb_A 69 LQKYTDTDYYLHWSNSHI----GFGKYNEGVAVI---TRHKIKAEDEFYCTFAQ-----SV-RT----------ISARRI 125 (266)
T ss_dssp HTTTCCSCCEEEEEEEEE----CSTTEEEEEEEE---ESSCCSEEEEEECSSCC-----CT-TC----------TTCCEE
T ss_pred HHHhCCCCeEEEEecccc----CccccCCeEEEE---ECceecCceeEEeCCCC-----CC-CC----------cccceE
Confidence 77655 7765432110 001234699999 77889888777654310 00 00 011234
Q ss_pred EEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCC--CChhhh
Q 008666 349 LIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP--GSAPHA 426 (557)
Q Consensus 349 l~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p--~s~~~~ 426 (557)
+.+.++. .++.|+|+||||.+.+.....|..|+..|++.+++ +.|+|||||||+.| ++..|+
T Consensus 126 ~~~~~~~-----------~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~-----~~~~il~GDfN~~~~~~~~~~~ 189 (266)
T 3teb_A 126 VSITINY-----------EGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN-----SNLKILMGDFNTDAIGNVAAYE 189 (266)
T ss_dssp EEEEEEE-----------TTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS-----CCEEEEEEECCCCTTTCHHHHH
T ss_pred EEEEEEe-----------CCeEEEEEEecCCCccCChHHHHHHHHHHHHHHhc-----CCcEEEEeECCCCCCCCCcHHH
Confidence 5555554 35789999999988766667899999988776653 57999999999999 888998
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCcccccc-CCcccceeE
Q 008666 427 LLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCT-RDFIGTLDY 505 (557)
Q Consensus 427 lL~~g~v~~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t-~~f~~~LDy 505 (557)
.|.... +.++|...... ..|+ +-...+..|. .....+|||
T Consensus 190 ~l~~~~---------------------------l~d~~~~~~~~--~~~~----------t~~~~~~~~~~~~~~~riD~ 230 (266)
T 3teb_A 190 NILSQG---------------------------LFDTYVMAEKK--DDGI----------TVDKSIHGWDNDKAKKRLDY 230 (266)
T ss_dssp HHHTTT---------------------------CEEHHHHCSEE--CCCC----------CEECC------CTTEECCEE
T ss_pred hhcccc---------------------------ccchHHhhccc--cCCc----------cccCccCCcCcCCcCCeeEE
Confidence 886421 12333322100 0000 0001111221 224569999
Q ss_pred EEeeCCCcceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEE
Q 008666 506 IFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 551 (557)
Q Consensus 506 If~s~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~ 551 (557)
||++++ +.+.....+.+. .....+|||+||+++|++
T Consensus 231 i~~s~~-~~~~~~~v~~~~---------~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 231 IFSNKE-LKVKESKVIFNN---------KNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp EEESSC-CCEEEEEEESSS---------SSSCCCSSSCEEEEEECC
T ss_pred EEeCCC-eEEEEEEEEeCC---------CCCCCcCCccCEEEEEEC
Confidence 999986 666555333220 113468999999999975
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.94 E-value=9.4e-27 Score=239.53 Aligned_cols=191 Identities=14% Similarity=0.133 Sum_probs=126.5
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhh-CCCeEE
Q 008666 202 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQAL 280 (557)
Q Consensus 202 ~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~gY~~~ 280 (557)
.....||||||||+...+.. .....|..|.++|...|...+|||||||||+.....+.+...|.. ++|...
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~--------~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~ 96 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVL--------YPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTP 96 (317)
T ss_dssp ---CCCCEEEEEEEECCTTT--------STTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECC
T ss_pred CCCCceEEEEEecccCcccc--------CCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccc
Confidence 35678999999999742211 112358999999999998999999999999876544444555653 444421
Q ss_pred EEecCCc-------ccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEE
Q 008666 281 YKRKTNE-------VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 353 (557)
Q Consensus 281 ~~~k~~~-------~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~L 353 (557)
.....+. .|........|++|| |||++++...+.|.... .++...+| .++.+.+
T Consensus 97 ~~g~~~~~~~~~~~~y~~~~~~~~G~~il---Sr~Pi~~~~~~~~~~~~-----------~~d~~~~r-----~~~~~~i 157 (317)
T 3i41_A 97 VLGRSQSGWDKTEGSYSSTVAEDGGVAIV---SKYPIKEKIQHVFKSGC-----------GFDNDSNK-----GFVYTKI 157 (317)
T ss_dssp CTTSCSTTCSEEEESCCSSCSBCCCCEEE---ESSCEEEEEEEECSCCC-----------SSGGGBCC-----EEEEEEE
T ss_pred cCCccccCccCcccccccccccCCccEEE---eCCCCccceeEECCCCC-----------CcccccCc-----ceEEEEE
Confidence 1111110 010111123599999 88999988877654310 01111222 2355555
Q ss_pred eeeecCCCCCCCCCcceEEEEEeccccCcC------CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhh
Q 008666 354 EAKFSNQGADTPGKRQLLCVANTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHAL 427 (557)
Q Consensus 354 e~k~~~~~~~~~~~~~~l~V~NTHL~~~p~------~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~l 427 (557)
+. .++.|.|+||||.+... ....|..|+..|.+.|++.....+.|+|||||||+.|.+..|+.
T Consensus 158 ~~-----------~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~ 226 (317)
T 3i41_A 158 EK-----------NGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKD 226 (317)
T ss_dssp EE-----------TTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHH
T ss_pred EE-----------CCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCCHHHHH
Confidence 54 36789999999976532 25689999999999998863334689999999999999999998
Q ss_pred hhc
Q 008666 428 LAM 430 (557)
Q Consensus 428 L~~ 430 (557)
|..
T Consensus 227 l~~ 229 (317)
T 3i41_A 227 MLK 229 (317)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 13
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.93 E-value=2e-25 Score=226.68 Aligned_cols=190 Identities=16% Similarity=0.205 Sum_probs=119.8
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhh-CCCeEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQALY 281 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~gY~~~~ 281 (557)
....||||||||+... ...+ +.| ..+.|.+.+...|...+|||||||||......+.+...|.. ++|...+
T Consensus 6 ~~~~lrv~t~Ni~~~~---~~~~---~~~--~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~ 77 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLS---TNLY---PNW--GQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAV 77 (306)
T ss_dssp -CCEEEEEEEEEEECC---TTTC---TTS--CHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCC
T ss_pred CCCEEEEEEEECccCc---cccc---CCC--CHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeec
Confidence 4568999999999642 1111 111 12678899988888999999999999876543334444543 3332111
Q ss_pred EecC-Cccc-------CCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEE
Q 008666 282 KRKT-NEVY-------NGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 353 (557)
Q Consensus 282 ~~k~-~~~~-------~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~L 353 (557)
.... +..+ ........|+||| +|++++....+.|.... ..+... .+.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~-----------~~~~~~-----~r~~~~~~i 138 (306)
T 2ddr_A 78 LGRSSGSEWDKTLGNYSSSTPEDGGVAIV---SKWPIAEKIQYVFAKGC-----------GPDNLS-----NKGFVYTKI 138 (306)
T ss_dssp TTSCCSTTSSEEEESCCTTCSSCCCCEEE---ESSCEEEEEEEECSCCC---------------CC-----CCEEEEEEE
T ss_pred cCcccccccccccccccccCccCCeEEEE---ECCCcccccEEEcCCCC-----------Ccchhc-----CCCeEEEEE
Confidence 1100 0000 0111234699999 78888877666543210 001111 233566766
Q ss_pred eeeecCCCCCCCCCcceEEEEEeccccCc------CCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCC------C
Q 008666 354 EAKFSNQGADTPGKRQLLCVANTHVNVHQ------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP------G 421 (557)
Q Consensus 354 e~k~~~~~~~~~~~~~~l~V~NTHL~~~p------~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p------~ 421 (557)
+. .++.|.|+||||.+.. .....|..|+..|.+.+++.....+.|+|||||||+.| .
T Consensus 139 ~~-----------~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~ 207 (306)
T 2ddr_A 139 KK-----------NDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN 207 (306)
T ss_dssp EE-----------TTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT
T ss_pred Ee-----------CCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC
Confidence 65 2578999999997652 23467999999999998876323457999999999999 8
Q ss_pred Chhhhhhhc
Q 008666 422 SAPHALLAM 430 (557)
Q Consensus 422 s~~~~lL~~ 430 (557)
+..|+.|..
T Consensus 208 s~~~~~l~~ 216 (306)
T 2ddr_A 208 DSEYASMFK 216 (306)
T ss_dssp TSHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888887654
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.91 E-value=4.2e-24 Score=212.09 Aligned_cols=156 Identities=21% Similarity=0.223 Sum_probs=103.5
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
||||||||... ..|.+.|++.|...+|||||||||..... .+....|...||..++..+.+
T Consensus 1 lrv~t~Nv~~~------------------~~~~~~i~~~i~~~~~Dii~LQE~~~~~~-~~~~~~l~~~gy~~~~~~~~~ 61 (268)
T 1ako_A 1 MKFVSFNINGL------------------RARPHQLEAIVEKHQPDVIGLQETKVHDD-MFPLEEVAKLGYNVFYHGQKG 61 (268)
T ss_dssp CEEEEEECSCG------------------GGCHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHHTTCEEEEEEETT
T ss_pred CEEEEEehhHH------------------HHHHHHHHHHHHHcCCCEEEEEeccCChh-hCCHhHhccCCCcEEEeCCCC
Confidence 69999999842 23567899999999999999999976532 233445666799887764322
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
..|+|||+|.. +..... .+.. ......|. ++.+.++.
T Consensus 62 ---------~~G~ailsr~~---~~~~~~-~~~~--------------~~~~~~~~-----~~~~~~~~----------- 98 (268)
T 1ako_A 62 ---------HYGVALLTKET---PIAVRR-GFPG--------------DDEEAQRR-----IIMAEIPS----------- 98 (268)
T ss_dssp ---------EEEEEEEESSC---CSEEEE-SSTT--------------CCHHHHTT-----EEEEEEEE-----------
T ss_pred ---------cceEEEEEecC---cceeee-CCCC--------------cccccCCC-----EEEEEEEc-----------
Confidence 35999996654 332211 1110 00011121 35555554
Q ss_pred CcceEEEEEeccccCcCCc-----ccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhh
Q 008666 367 KRQLLCVANTHVNVHQELK-----DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPH 425 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~~~-----~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~ 425 (557)
.++.|.|+|||+.+..... ..|..|+..|.+.+++.. ..+.|+|||||||+.|++..+
T Consensus 99 ~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~-~~~~~~Il~GDFN~~~~~~~~ 161 (268)
T 1ako_A 99 LLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETEL-KRDNPVLIMGDMNISPTDLDI 161 (268)
T ss_dssp TTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECCCCCSGGGB
T ss_pred CCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhh-hCCCCEEEEeECCCCCchhcc
Confidence 2358999999997654221 357888888888888763 346799999999999987554
No 15
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.91 E-value=8.5e-24 Score=208.43 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=97.6
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
||||||||+. |..|.+.|++.|..++||||||||+..... .+....|...||..++..+.
T Consensus 1 lrv~t~Nv~~------------------~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~-~~~~~~~~~~gy~~~~~~~~- 60 (256)
T 2jc4_A 1 MKITTWNVNS------------------LNVRLPQVQNLLADNPPDILVLQELKLDQD-KFPAAALQMMGWHCVWSGQK- 60 (256)
T ss_dssp CEEEEEECSC------------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGG-GSCHHHHHTTTCEEEEECCS-
T ss_pred CEEEEEEcCC------------------cHHHHHHHHHHHHhcCCCEEEEEeeccchh-cCCHhHHhhcCCeEEECCCC-
Confidence 6999999983 677889999999999999999999987543 23344566679987765421
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
...|+|||+|. ++..... .+... ..+...| ++.+ +.
T Consensus 61 --------~~~G~ailsr~---~~~~~~~-~~~~~-------------~~~~~~~------~~~~--~~----------- 96 (256)
T 2jc4_A 61 --------TYNGVAIVSRS---VPQDVHF-GLPAL-------------PDDPQRR------VIAA--TV----------- 96 (256)
T ss_dssp --------SSCCEEEEESS---CCEEEEE-SCTTS-------------TTCCSCC------EEEE--EE-----------
T ss_pred --------cceEEEEEECC---ChHHhee-cCCCC-------------ccCCcCc------EEEE--Ee-----------
Confidence 23599999664 4433221 11100 0000112 1222 22
Q ss_pred CcceEEEEEeccccCcCCc----ccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCC
Q 008666 367 KRQLLCVANTHVNVHQELK----DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~~~----~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s 422 (557)
+.+.|+|+|+....... +.|..|+..|.+.+++... .+.|+|||||||+.+.+
T Consensus 97 --~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~-~~~~~il~GDFN~~~~~ 153 (256)
T 2jc4_A 97 --SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMT-RHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp --TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHT-TCSSEEEEEECCCCCSG
T ss_pred --CCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhc-CCCCEEEEeECCCCCch
Confidence 14899999996543211 2366788888888877632 46799999999998875
No 16
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.90 E-value=8.7e-23 Score=201.53 Aligned_cols=149 Identities=17% Similarity=0.263 Sum_probs=89.9
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHH-HHHHHHhcCCCcEEEEeccchhhHHHHhHHHH-hhCCCeEEEEec
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGYQALYKRK 284 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L-~~~gY~~~~~~k 284 (557)
||||||||... ..+.+ .|++.|..++||||||||+..... . +...| ...||..++...
T Consensus 2 l~v~t~Ni~~~------------------~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~~~~ 61 (259)
T 2jc5_A 2 LKIISANVNGI------------------RSAYKKGFYEYIAASGADIVCVQELKAQEA-D-LSADMKNPHGMHGHWHCA 61 (259)
T ss_dssp EEEEEEECSSH------------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGG-G-CCHHHHSGGGCEEEEECC
T ss_pred cEEEEEeeccH------------------HHHHHhHHHHHHHhcCCCEEEEEEecchhh-c-cChhhccccCCeEEEecc
Confidence 79999999841 12223 499999999999999999976532 1 22223 346898777642
Q ss_pred CCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCC
Q 008666 285 TNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADT 364 (557)
Q Consensus 285 ~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~ 364 (557)
.. ....|+|||+|.. +..... .+. .. ..+...| .+.+ +.
T Consensus 62 ~~-------~~~~G~ailsr~~---~~~~~~-~~~------------~~-~~~~~~r------~~~~--~~--------- 100 (259)
T 2jc5_A 62 EK-------RGYSGVAVYSKRK---PDNVQI-GMG------------IE-EFDREGR------FVRC--DF--------- 100 (259)
T ss_dssp SS-------TTCCCEEEEESSC---CSEEEE-SCS------------CH-HHHTTCC------EEEE--EE---------
T ss_pred CC-------CCcceEEEEEecC---ceeEEe-CCC------------CC-ccCCCCe------EEEE--Ec---------
Confidence 11 1235999996654 333211 111 00 0000112 1222 21
Q ss_pred CCCcceEEEEEeccccCcCCcccHH----HHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCC
Q 008666 365 PGKRQLLCVANTHVNVHQELKDVKL----WQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 365 ~~~~~~l~V~NTHL~~~p~~~~vR~----~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s 422 (557)
+.+.|+|+|+.+... ...|. .|+..|.+.+++... .+.|+|||||||+.|++
T Consensus 101 ----~~~~v~~~h~~~~~~-~~~r~~~~~~~~~~l~~~~~~~~~-~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 101 ----GRLSVISLYLPSGSS-AEERQQVKYRFLDAFYPMLEAMKN-EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp ----TTEEEEEEECCCCTT-CHHHHHHHHHHHHHHHHHHHHHHH-TCSEEEEEEECCCCCSG
T ss_pred ----CCEEEEEEeccCCCC-CcHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEEeeCCCCCch
Confidence 248999999976543 23343 566777777766532 36799999999998875
No 17
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.89 E-value=3.1e-22 Score=194.82 Aligned_cols=147 Identities=19% Similarity=0.271 Sum_probs=90.4
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEe
Q 008666 204 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 283 (557)
Q Consensus 204 ~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~ 283 (557)
...||||||||... ....|++.|++.|..++||||||||+..... .+ +.+...||...+..
T Consensus 5 ~~~lri~t~Nv~g~----------------~~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~--~~-~~l~~~~y~~~~~~ 65 (238)
T 1vyb_A 5 NSHITILTLNINGL----------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCR--DT-HRLKIKGWRKIYQA 65 (238)
T ss_dssp CCCEEEEEEECSCC----------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTT--SG-GGCCCTTCCEEEEE
T ss_pred CCcceEEEEecccC----------------CchhhHHHHHHHHHHcCCCEEEEecccCCCC--Cc-hhHhhCCCCeEEEc
Confidence 45799999999742 1245678899999999999999999964321 11 22334588876654
Q ss_pred cCCcccCCCCCCccceEeeeecc-ceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 284 KTNEVYNGNPHTIDGCATFFRRD-RFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 284 k~~~~~~~~~~~~~G~Aif~r~s-rf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
.... ...|+|||+|.. .+.+.. +... ...|. +.+.++.
T Consensus 66 ~~~~-------~~~Gvail~r~~~~~~~~~---~~~~------------------~~~r~------i~~~~~~------- 104 (238)
T 1vyb_A 66 NGKQ-------KKAGVAILVSDKTDFKPTK---IKRD------------------KEGHY------IMVKGSI------- 104 (238)
T ss_dssp CCSS-------SSCCEEEEECTTCCCEEEE---EEEC------------------TTSSE------EEEEEEE-------
T ss_pred cCCC-------CCceEEEEEeCCCCccccc---eeEc------------------CCCcE------EEEEEEe-------
Confidence 3211 124999998876 444432 1110 01122 2233332
Q ss_pred CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCC
Q 008666 363 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s 422 (557)
.++.+.|+|+|+.... .. .+...+++.|.+. .+.|+|||||||+.+.+
T Consensus 105 ----~~~~~~v~~~y~p~~~---~~--~~~~~l~~~l~~~---~~~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 105 ----QQEELTILNIYAPNTG---AP--RFIKQVLSDLQRD---LDSHTLIMGDFNTPLST 152 (238)
T ss_dssp ----TTEEEEEEEEECCSSS---HH--HHHHHHHHHTTTT---CCTTEEEEEECSSCSSG
T ss_pred ----CCCcEEEEEEecCCCC---cH--HHHHHHHHHHHhc---cCCCEEEEccCCCCCCc
Confidence 2567999999985432 11 2344444444332 35799999999997764
No 18
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.88 E-value=9.5e-22 Score=197.81 Aligned_cols=154 Identities=17% Similarity=0.239 Sum_probs=91.0
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHH-HHHHHHhcCCCcEEEEeccchhhHHHHhHHHHh-hCCC-e
Q 008666 202 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGY-Q 278 (557)
Q Consensus 202 ~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~gY-~ 278 (557)
.....||||||||+.. ..+.+ .|++.|..++||||||||+..... . +...|. ..|| .
T Consensus 24 ~~~~~l~v~t~Ni~~~------------------~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~ 83 (285)
T 2o3h_A 24 GKPATLKIASWNVDGL------------------RAWIKKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSH 83 (285)
T ss_dssp SCBCCEEEEEEECSSH------------------HHHHHTTHHHHHHHHCCSEEEEECCCCCTT-S-CCGGGGGCGGGCE
T ss_pred CCccceEEEEEecccC------------------hhhhhhhHHHHHHhcCCCEEEEEEeecchh-h-ccHHHHhccCCcE
Confidence 3456899999999842 11112 289999999999999999976431 1 122233 4588 4
Q ss_pred EEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeec
Q 008666 279 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 358 (557)
Q Consensus 279 ~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~ 358 (557)
.++...... ....|+|||+|...+.+... +... ..+...|+ +.+ +
T Consensus 84 ~~~~~~~~~------~g~~Gvailsr~~~~~~~~~----~~~~-------------~~~~~~r~------l~~--~---- 128 (285)
T 2o3h_A 84 QYWSAPSDK------EGYSGVGLLSRQCPLKVSYG----IGDE-------------EHDQEGRV------IVA--E---- 128 (285)
T ss_dssp EEEECBC--------CCSCCEEEEESSCCSEEEES----CSCG-------------GGSSBCCE------EEE--E----
T ss_pred EEEecccCC------cccceEEEEEccChHHeeec----cCCc-------------ccCCCCcE------EEE--E----
Confidence 444331111 12249999977664443211 1000 00011121 211 1
Q ss_pred CCCCCCCCCcceEEEEEeccccCcCC---cccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCC
Q 008666 359 NQGADTPGKRQLLCVANTHVNVHQEL---KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 421 (557)
Q Consensus 359 ~~~~~~~~~~~~l~V~NTHL~~~p~~---~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~ 421 (557)
.+.+.|+|+|+...... ...|..|+..|.+.++++.. ..|+|||||||+.+.
T Consensus 129 ---------~~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~--~~p~Il~GDFN~~~~ 183 (285)
T 2o3h_A 129 ---------FDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLAS--RKPLVLCGDLNVAHE 183 (285)
T ss_dssp ---------CSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHT--TSCEEEEEECSCCCS
T ss_pred ---------eCCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhcc--CCCEEEEEECCCCCc
Confidence 12589999999543211 12377788888888887643 479999999998765
No 19
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.87 E-value=1.4e-21 Score=192.91 Aligned_cols=148 Identities=21% Similarity=0.287 Sum_probs=88.1
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCC
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 286 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~ 286 (557)
||||||||... ..|.+.|++.|...+||||||||+..... .+....+...||..++..+.
T Consensus 2 lrv~t~Nv~g~------------------~~~~~~i~~~i~~~~~Dii~lQE~~~~~~-~~~~~~~~~~gy~~~~~~~~- 61 (257)
T 2voa_A 2 LKIATFNVNSI------------------RSRLHIVIPWLKENKPDILCMQETKVENR-KFPEADFHRIGYHVVFSGSK- 61 (257)
T ss_dssp EEEEEEECSCG------------------GGTHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHTTTCEEEEEEET-
T ss_pred eEEEEEecCCh------------------HHHHHHHHHHHhhcCCCEEEEEEeecchh-hcCHHHhhhCCCcEEEcCCC-
Confidence 79999999741 12246799999999999999999975321 11122345579987665321
Q ss_pred cccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCC
Q 008666 287 EVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPG 366 (557)
Q Consensus 287 ~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~ 366 (557)
...|+|||+|. ++..... .+. ... .+ ..|+ +.+ +.
T Consensus 62 --------~~~G~ailsr~---~~~~~~~-~~~------------~~~-~~-~~r~------l~~--~~----------- 96 (257)
T 2voa_A 62 --------GRNGVAIASLE---EPEDVSF-GLD------------SEP-KD-EDRL------IRA--KI----------- 96 (257)
T ss_dssp --------TEEEEEEEESS---CCEEEEE-SCS------------SSS-CC-GGGE------EEE--EE-----------
T ss_pred --------CccEEEEEEcc---ChHHhee-cCC------------CCc-cc-cCcE------EEE--EE-----------
Confidence 22599999665 3332111 110 000 01 2232 222 21
Q ss_pred CcceEEEEEeccccCcCCc----ccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCC
Q 008666 367 KRQLLCVANTHVNVHQELK----DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 367 ~~~~l~V~NTHL~~~p~~~----~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s 422 (557)
..+.|+|+|+....... ..|..|+..|.+.+++.. ..+.|+|||||||+.|.+
T Consensus 97 --~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~-~~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 97 --AGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTV-DFRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp --TTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECSCCCSG
T ss_pred --CCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeeCCCCCch
Confidence 14899999995432211 124455666666666552 246799999999998864
No 20
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.86 E-value=3.8e-21 Score=191.62 Aligned_cols=242 Identities=17% Similarity=0.235 Sum_probs=136.1
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHH-HHHHHHhcCCCcEEEEeccchhhHHHHhHHHHh-hCCCeEEEEe
Q 008666 206 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKR 283 (557)
Q Consensus 206 ~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~gY~~~~~~ 283 (557)
.|||+||||... ..+.+ .|+++|..++||||||||+..... . +...+. ..||..++..
T Consensus 3 ~l~i~s~Nv~g~------------------~~~~~~~l~~~i~~~~~DIv~LQEt~~~~~-~-~~~~~~~~~gy~~~~~~ 62 (265)
T 3g91_A 3 VLKIISWNVNGL------------------RAVHRKGFLKWFMEEKPDILCLQEIKAAPE-Q-LPRKLRHVEGYRSFFTP 62 (265)
T ss_dssp EEEEEEEECSCH------------------HHHHHHTHHHHHHHHCCSEEEEECCCSCGG-G-SCHHHHCCTTCEEEEEC
T ss_pred ccEEEEEEcCCc------------------hhhhhhhHHHHHHhcCCCEEEEEecccccc-c-cChhhhcccCCcEEEcc
Confidence 589999999741 12222 488999999999999999965431 2 222233 5799977765
Q ss_pred cCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCC
Q 008666 284 KTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 363 (557)
Q Consensus 284 k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~ 363 (557)
.... ...|+|||+|...+.+... +... ..+...|+ + .++.
T Consensus 63 ~~~~-------~~~Gvail~k~~~~~~~~~----~~~~-------------~~d~~gr~------i--~~~~-------- 102 (265)
T 3g91_A 63 AERK-------GYSGVAMYTKVPPSSLREG----FGVE-------------RFDTEGRI------Q--IADF-------- 102 (265)
T ss_dssp BSST-------TSCCEEEEESSCCSEEECC----CSCH-------------HHHSBSCE------E--EEEC--------
T ss_pred CCCC-------CcCEEEEEEecChHHhccC----CCCc-------------ccCCcCCE------E--EEEe--------
Confidence 4221 2359999977654332211 0000 00111122 1 1121
Q ss_pred CCCCcceEEEEEeccccCcCC---cccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCC
Q 008666 364 TPGKRQLLCVANTHVNVHQEL---KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDL 440 (557)
Q Consensus 364 ~~~~~~~l~V~NTHL~~~p~~---~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~ 440 (557)
..+.|+|+|+...... ...|..+...|.+.+++... .+.|+|||||||+.+...- ..++
T Consensus 103 -----~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~-~~~~~ii~GDfN~~~~~~d------------~~~~ 164 (265)
T 3g91_A 103 -----DDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERD-SGRNVIICGDFNTAHREID------------LARP 164 (265)
T ss_dssp -----SSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCCCSGGG------------BSCT
T ss_pred -----CCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHc-CCCCEEEECccccCCchhh------------ccCH
Confidence 2488999999544321 12366677777777777643 3579999999999886410 0000
Q ss_pred CCCCCCCCCCCCCcccCCCCcchhhhhhhhccCCccccccccCCCCCCCCccccccC-------CcccceeEEEeeCCCc
Q 008666 441 AVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR-------DFIGTLDYIFYTADSL 513 (557)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~-------~f~~~LDyIf~s~~~l 513 (557)
.... ...++ .......+..+ .+.|+.+.++.+++..+ .||+|.. +...+|||||+++..+
T Consensus 165 ~~~~-----~~~~~-----~~~~~~~~~~l-~~~gl~D~~r~~~p~~~--~yT~~~~~~~~~~~~~~~rID~il~s~~~~ 231 (265)
T 3g91_A 165 KENS-----NVSGF-----LPVERAWIDKF-IENGYVDTFRMFNSDPG--QYTWWSYRTRARERNVGWRLDYFFVNEEFK 231 (265)
T ss_dssp GGGT-----TSTTS-----CHHHHHHHHHH-HHTTEEETHHHHCCCSC--CCSBCCSSTTTTTTTCCBCCEEEEEEGGGG
T ss_pred hhcC-----CCCcc-----CHHHHHHHHHH-HhcCcEEeeHhhCCCCC--CCCCcCCCCCccccCceEEEEEEEECHHHH
Confidence 0000 00000 00011222222 24567777776665533 6887743 2235899999998732
Q ss_pred -ceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEE
Q 008666 514 -SVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 551 (557)
Q Consensus 514 -~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~ 551 (557)
.+....-.. ...+|||.||+++|.-
T Consensus 232 ~~~~~~~i~~-------------~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 232 GKVKRSWILS-------------DVMGSDHCPIGLEIEL 257 (265)
T ss_dssp GGEEEEEECT-------------TCCSSSBCCEEEEEEC
T ss_pred hhhcEEEEeC-------------CCCCCCcceEEEEhhh
Confidence 233332111 1247999999999975
No 21
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.86 E-value=4.9e-21 Score=196.67 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=87.3
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHH-hhCCC-eE
Q 008666 202 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGY-QA 279 (557)
Q Consensus 202 ~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L-~~~gY-~~ 279 (557)
.....||||||||.... ... ...|++.|..++||||||||+..... . +...| ...|| ..
T Consensus 57 ~~~~~lrv~t~Nv~g~~----------------~~~-~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~ 117 (318)
T 1hd7_A 57 GKPATLKICSWNVDGLR----------------AWI-KKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQ 117 (318)
T ss_dssp SCBCCEEEEEEECSSHH----------------HHH-HTTHHHHHHHHCCSEEEEECCCCCC-------------CCCEE
T ss_pred CCCCceEEEEEecCcch----------------hhh-hhhHHHHHHhhCCCEEEEEEccCchh-h-ccHHHHhcCCCceE
Confidence 34568999999998421 001 12388999999999999999976431 1 12223 24588 44
Q ss_pred EEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecC
Q 008666 280 LYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSN 359 (557)
Q Consensus 280 ~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~ 359 (557)
++...... ....|+|||+|...+.+.. .+... ..+...| ++.+ +.
T Consensus 118 ~~~~~~~~------~g~~Gvailsr~~~~~~~~----~~~~~-------------~~~~~~r------~l~~--~~---- 162 (318)
T 1hd7_A 118 YWSAPSDK------EGYSGVGLLSRQCPLKVSY----GIGDE-------------EHDQEGR------VIVA--EF---- 162 (318)
T ss_dssp EEECC-----------CCCEEEEESSCCSEEEE----SCSCG-------------GGSSSSC------EEEE--EC----
T ss_pred EEecCCCC------CccceEEEEEcCCceeEEe----cCCCc-------------ccCCCCc------EEEE--Ec----
Confidence 44331111 1224999997765433221 11000 0001112 1222 21
Q ss_pred CCCCCCCCcceEEEEEeccccCcCC---cccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCC
Q 008666 360 QGADTPGKRQLLCVANTHVNVHQEL---KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 360 ~~~~~~~~~~~l~V~NTHL~~~p~~---~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s 422 (557)
+.|.|+|+|+...... ...|..|+..|.+.++++.. ..|+|||||||+.+.+
T Consensus 163 ---------~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~--~~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 163 ---------DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLAS--RKPLVLCGDLNVAHEE 217 (318)
T ss_dssp ---------SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHH--HSCEEEEEECSCCCSG
T ss_pred ---------CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhccc--CCCEEEEeeCCCCChh
Confidence 2489999999443211 12477888888888887643 2699999999988754
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.86 E-value=4.1e-21 Score=206.92 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHH-HHHHHHHhcCCCcEEEEeccchhh--HHHHhHHHHh-hCCCe
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDH--FEEFFAPELD-KHGYQ 278 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~-~~i~~eI~~~~aDIIcLQEV~~~~--~~~~l~~~L~-~~gY~ 278 (557)
....||||||||.... .|..|. +.|++.|..++||||||||+.... +.. ...|. ..||.
T Consensus 146 ~~~~LKI~TwNVnGl~---------------~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~--~~~la~~~GY~ 208 (467)
T 2j63_A 146 PSRMYKFITWNVAGLR---------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADA--NATLGVVDGYS 208 (467)
T ss_dssp TTTEEEEEEEECSCHH---------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHH--HHTSSCCTTEE
T ss_pred CCCCeEEEEEEcCCCc---------------ccccccHHHHHHHHHHcCCCEEEEEecccchhccch--HHHHhhcCCce
Confidence 3467999999998421 122222 579999999999999999996532 111 12244 46897
Q ss_pred EEEEecCCcccCCCCCCccceEeeeeccc
Q 008666 279 ALYKRKTNEVYNGNPHTIDGCATFFRRDR 307 (557)
Q Consensus 279 ~~~~~k~~~~~~~~~~~~~G~Aif~r~sr 307 (557)
.++....+. ....|+|||+|...
T Consensus 209 ~~~~~~~~~------~g~~GVAIlsR~pi 231 (467)
T 2j63_A 209 FVDHPCAFK------RGYSGTRTYMKNST 231 (467)
T ss_dssp EEEECCSSS------TTSCCEEEEEECCC
T ss_pred EEEecccCC------CCcceEEEEEeCCc
Confidence 766532111 12369999977764
No 23
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.85 E-value=8.9e-21 Score=188.95 Aligned_cols=171 Identities=16% Similarity=0.237 Sum_probs=101.4
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhc--CCCcEEEEeccchhh---HHHHhHHHHhh---CCCe
Q 008666 207 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG--YRADIVCLQEVQNDH---FEEFFAPELDK---HGYQ 278 (557)
Q Consensus 207 ~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~--~~aDIIcLQEV~~~~---~~~~l~~~L~~---~gY~ 278 (557)
||||||||+.. .. . .+|...+++.|.. .+|||||||||+... +. .|...|.. .+|.
T Consensus 1 lrv~s~NI~~~--g~-----------~--~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~-~l~~~L~~~~~~~y~ 64 (260)
T 2a40_B 1 LKIAAFNIRTF--GE-----------T--KMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVG-KLLDYLNQDDPNTYH 64 (260)
T ss_dssp CEEEEEEEEEE--SH-----------H--HHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHH-HHHHHHTSSSTTSCE
T ss_pred CEEEEEehhhh--CC-----------C--ccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHH-HHHHHHHhccCCCcE
Confidence 69999999952 11 0 1133344444443 389999999998742 33 34556643 2477
Q ss_pred EEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeec
Q 008666 279 ALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFS 358 (557)
Q Consensus 279 ~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~ 358 (557)
.+.....+. ....+++|++||++++.+++...+ ... ...+. ...+.|. .+++.++..
T Consensus 65 ~v~~~~~~~-----~~~~~~~~~ly~~~~v~~~~~~~~--~~~------~~~~~---~~~~~R~-----p~~~~~~~~-- 121 (260)
T 2a40_B 65 YVVSEPLGR-----NSYKERYLFLFRPNKVSVLDTYQY--DDG------CESCG---NDSFSRE-----PAVVKFSSH-- 121 (260)
T ss_dssp EEECCCBCS-----SSCCBEEEEEECTTTCEEEEEEEC--CTT------STTTH---HHHCSSC-----CEEEEEECT--
T ss_pred EEEcccCCC-----CCCcEEEEEEEcCceeEecCceec--cCC------CcCCC---CCceeeC-----CEEEEEEeC--
Confidence 665543221 123468999999999999886432 110 00000 1223343 245555541
Q ss_pred CCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh-cCCCCEEEEccCCCCCC---Chhhhh
Q 008666 359 NQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPG---SAPHAL 427 (557)
Q Consensus 359 ~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~-~~~~pvIl~GDFNs~p~---s~~~~l 427 (557)
...++.|.|+|+||.+.. +..|+..|.+.++.+.. ..+.|+|||||||+.+. +..++.
T Consensus 122 ------~~~g~~~~vi~~Hl~~~~-----~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~ 183 (260)
T 2a40_B 122 ------STKVKEFAIVALHSAPSD-----AVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSS 183 (260)
T ss_dssp ------TSSSSEEEEEECCCCGGG-----HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGGG
T ss_pred ------CCCCceEEEEEecCCCCC-----cHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhhh
Confidence 112678999999997432 33467667666655432 23579999999999887 544443
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.84 E-value=4.5e-20 Score=181.82 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=83.9
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEE
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 282 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~ 282 (557)
....||||||||... ..+.+.+++.|...+||||||||+........ . ...||..++.
T Consensus 16 ~~~~lri~s~Nv~~~------------------~~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~---~-~~~gy~~~~~ 73 (245)
T 1wdu_A 16 NGPPYRVLQANLQRK------------------KLATAELAIEAATRKAAIALIQEPYVGGAKSM---K-GFRGVRVFQS 73 (245)
T ss_dssp --CCEEEEEEECTTC------------------HHHHHHHHHHHHHHTCSEEEEESCCC---------C-CCSSCEEEEC
T ss_pred cCcceeeeeeecccc------------------HHHHHHHHHHHhhcCCCEEEEEcccccCCccc---c-CCCcceEecc
Confidence 345799999999842 23567899999999999999999976533221 1 1347865443
Q ss_pred ecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCC
Q 008666 283 RKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGA 362 (557)
Q Consensus 283 ~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~ 362 (557)
..... ...|+|||+++.++++... ... ..+ . .+.+.++.
T Consensus 74 ~~~~~-------~~~GvaIl~~~~~~~~~~~-----~~~-----------------~~~----~-~~~~~i~~------- 112 (245)
T 1wdu_A 74 TAQGD-------GTVKAAIAVFDHDLDVIQY-----PQL-----------------TTN----N-IVVVGIRT------- 112 (245)
T ss_dssp CCCTT-------CCCCEEEEECCSSCEEEEC-----TTT-----------------CCS----S-EEEEEEEC-------
T ss_pred ccccC-------CCCCeEEEEECCCcceEEe-----ccc-----------------ccC----C-EEEEEEEc-------
Confidence 21110 1359999998877776321 100 001 1 23344443
Q ss_pred CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCC
Q 008666 363 DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 421 (557)
Q Consensus 363 ~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~ 421 (557)
.+..+.|+|+|+..... ......|+..+ ++.+ ...|+|||||||+.+.
T Consensus 113 ----~~~~~~v~~vy~p~~~~-~~~~~~~l~~~---~~~~---~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 113 ----RAWEITLVSYYFEPDKP-IESYLEQIKRV---ERKM---GPKRLIFGGDANAKST 160 (245)
T ss_dssp ----SSCEEEEEEEECCTTSC-SHHHHHHHHHH---HHTT---CSSSEEEEEECCCCCG
T ss_pred ----CCCcEEEEEEEeCCCCC-HHHHHHHHHHH---HHHh---CCCcEEEEeccccCcc
Confidence 24579999999965421 11122233222 2222 3469999999998763
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.75 E-value=6.7e-19 Score=178.10 Aligned_cols=172 Identities=14% Similarity=0.089 Sum_probs=102.2
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcE--EEEeccchhh--------HHHHhHHHHh
Q 008666 204 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQNDH--------FEEFFAPELD 273 (557)
Q Consensus 204 ~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDI--IcLQEV~~~~--------~~~~l~~~L~ 273 (557)
.-+|+||||||....- +... ..++..|...+||| |||||+.... ..+.+...|.
T Consensus 6 ~~~i~V~T~Nv~~~~~---------~~~l-------~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~ 69 (282)
T 2imq_X 6 QLSVHTVSWNSGHERA---------PTNL-------EELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT 69 (282)
T ss_dssp EEEEEEEEEEEETCCC---------CSCC-------HHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCcC---------chhH-------HHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcC
Confidence 3479999999985421 0111 12223345689996 5999998542 2344566676
Q ss_pred hCCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEE
Q 008666 274 KHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVL 353 (557)
Q Consensus 274 ~~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~L 353 (557)
..+|..+.....+. ....+++|+|.+.++.++...+. . + . ..+...-++.+.+
T Consensus 70 ~~~Y~~v~~~~~~~-------~G~~l~vf~k~~~~~~i~~~~~~--~----~----~----------g~~g~kGav~~r~ 122 (282)
T 2imq_X 70 SKGYTKLKNTITET-------MGLTVYCLEKHLDQNTLKNETII--V----T----V----------DDQKKSGGIVTSF 122 (282)
T ss_dssp HTTEEEEEEEECSS-------EEEEEEEEGGGCCTTTCCCEEEE--E----E----C----------STTSCSEEEEEEE
T ss_pred CCceEEEEeccCce-------eEEEEEEEEccccCccceeeeec--c----c----c----------ccccCCceEEEEE
Confidence 66777665422211 22467888888777666543321 0 0 0 0012223565666
Q ss_pred eeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCC---Chhhhhhhc
Q 008666 354 EAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG---SAPHALLAM 430 (557)
Q Consensus 354 e~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~---s~~~~lL~~ 430 (557)
.. .+..|+++|+||..+......|..|++.|++.+... ....++|+|||||..++ +.+++++.+
T Consensus 123 ~~-----------~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~--~~~~~vi~~GDfN~r~~~~~~~~~~~i~~ 189 (282)
T 2imq_X 123 TI-----------YNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKD--DPSDFLFWIGDLNVRVETNATHAKSLVDQ 189 (282)
T ss_dssp EE-----------TTEEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSS--SCCSEEEEEEECSCCBCSCHHHHHHHHHT
T ss_pred EE-----------CCEEEEEEEECCCCCCchHHHHHHHHHHHHHhhhcc--CccceEEEecccccccCCCHHHHHHHHhh
Confidence 54 356899999999877443455666766665544322 23468999999997655 456677765
Q ss_pred C
Q 008666 431 G 431 (557)
Q Consensus 431 g 431 (557)
+
T Consensus 190 ~ 190 (282)
T 2imq_X 190 N 190 (282)
T ss_dssp T
T ss_pred c
Confidence 4
No 26
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.73 E-value=4.6e-17 Score=160.75 Aligned_cols=214 Identities=15% Similarity=0.077 Sum_probs=113.3
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecC
Q 008666 206 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 285 (557)
Q Consensus 206 ~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~ 285 (557)
.|||+||||... ..|.+.+++.|...+||||||||+.. ..||. +...
T Consensus 7 ~mki~s~Nvn~~------------------r~~~~~l~~~l~~~~~DIl~LQEt~~------------~~gy~-~~~~-- 53 (240)
T 2ei9_A 7 RLRIGQINLGGA------------------EDATRELPSIARDLGLDIVLVQEQYS------------MVGFL-AQCG-- 53 (240)
T ss_dssp EEEEEEEECTTC------------------HHHHHTHHHHHHHHTCSEEEEESCCT------------TSSSE-ECCS--
T ss_pred cceEEEEecCcc------------------HHHHHHHHHHHHHcCCCEEEeecceE------------cCCce-Eecc--
Confidence 599999999852 23556799999999999999999952 12776 2111
Q ss_pred CcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCC
Q 008666 286 NEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 365 (557)
Q Consensus 286 ~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~ 365 (557)
...|+||+.+...+++... .. + . ... +..+.++
T Consensus 54 ---------~~~gvail~~~~~~~~~~~-----~~----~----------~-------~~~-~~~i~i~----------- 86 (240)
T 2ei9_A 54 ---------AHPKAGVYIRNRVLPCAVL-----HH----L----------S-------STH-ITVVHIG----------- 86 (240)
T ss_dssp ---------SSCSEEEEESSTTSCEEEC-----GG----G----------C-------CSS-EEEEEET-----------
T ss_pred ---------CCCCEEEEEecCCcceeee-----cc----c----------C-------CCC-EEEEEEe-----------
Confidence 1248999987644433210 00 0 0 001 1222222
Q ss_pred CCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCC
Q 008666 366 GKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPL 445 (557)
Q Consensus 366 ~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~ 445 (557)
...|.|+|+|+..... .+.++.++..|.+ ... +.|+|||||||..+.. |.....
T Consensus 87 --~~~i~i~svY~P~~~~-~~~~~~~l~~l~~----~~~--~~~~Ii~GDfN~~~~~-----------------w~~~~~ 140 (240)
T 2ei9_A 87 --GWDLYMVSAYFQYSDP-IDPYLHRLGNILD----RLR--GARVVICADTNAHSPL-----------------WHSLPR 140 (240)
T ss_dssp --TTTEEEEEEECCTTSC-SHHHHHHHHHHHH----HTT--TSCEEEEEECCCCCGG-----------------GTCCHH
T ss_pred --eccEEEEEEEcCCCCc-hhHHHHHHHHHHH----hcC--CCcEEEEEeccccccc-----------------ccCCCC
Confidence 1358999999854321 1233333333322 111 3699999999987631 100000
Q ss_pred CCCCCCCCcccCCCCcchhhhhhhhccCCccccccc--cCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCC
Q 008666 446 TILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRR--RMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLD 523 (557)
Q Consensus 446 ~~~~~~~~l~~~~~l~Say~~~~~~~~~~g~~~~~~--~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~ 523 (557)
. .+..+.. .....+.. .++.+..+ .+.+ ....||+|......+|||||+++. +..... .+.
T Consensus 141 ~--------~~~~~~~--r~~~~~~l--~~~~d~~~l~~~~~--~~~~~T~~s~~~~~rID~~l~s~~-l~~~~~-~i~- 203 (240)
T 2ei9_A 141 H--------YVGRGQE--VADRRAKM--EDFIGARRLVVHNA--DGHLPTFSTANGESYVDVTLSTRG-VRVSEW-RVT- 203 (240)
T ss_dssp H--------HSSSCHH--HHHHHHHH--HHHHHHTTCEECCC--TTCCCSEEETTEEECCEEEEECTT-CCEEEE-EEC-
T ss_pred C--------CCCcchh--hHHHHHHH--HHHHHhcCCEecCC--CCCCceEeCCCCceEEEEEEecCc-cccCCe-EEC-
Confidence 0 0000000 00000000 01222222 1222 123688887665789999999987 443221 111
Q ss_pred hhhhccCCCCCCCCCCCCcceeeEEEEEecc
Q 008666 524 EDSLRKDTALPSPEWSSDHIALLAEFRCKPR 554 (557)
Q Consensus 524 ~~~~~~~~~lP~~~~pSDH~pl~aef~~~~~ 554 (557)
...+|||.||+++|...+.
T Consensus 204 ------------~~~~SDH~Pv~~~l~~~~~ 222 (240)
T 2ei9_A 204 ------------NESSSDHRLIVFGVGGGTT 222 (240)
T ss_dssp ------------SCCSSSBCCEEEEEEC---
T ss_pred ------------CCCCCCcccEEEEECCCCC
Confidence 1358999999999988543
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.68 E-value=2.7e-16 Score=155.27 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=90.7
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhc-CCCcEEEEeccchhhHHHHhHHHHh----------
Q 008666 205 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQNDHFEEFFAPELD---------- 273 (557)
Q Consensus 205 ~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~-~~aDIIcLQEV~~~~~~~~l~~~L~---------- 273 (557)
..||||||||+.....+ -..+...|++.|.+ .++|||.|||++.---.......+.
T Consensus 3 ~~~kv~TwNi~g~~~~~-------------~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~ 69 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVN-------------ESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEY 69 (261)
T ss_dssp GGSCEEEEECCCCSSSS-------------HHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEE
T ss_pred cccEEEEEEcCCCCCCC-------------hhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhh
Confidence 36899999999632111 11223368888888 7899999999986311100001110
Q ss_pred --hC------CCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccC
Q 008666 274 --KH------GYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKD 345 (557)
Q Consensus 274 --~~------gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~ 345 (557)
.. ++.++|..+... .....|+||+ +|+++.+...+.... .....|-
T Consensus 70 ~w~lg~~~r~~~~yiy~~~~d~-----~~g~~g~AIl---SR~~~~~v~~l~~~~---------------~~~~~R~--- 123 (261)
T 1sr4_B 70 TWNLGTRSRPNMVYIYYSRLDV-----GANRVNLAIV---SRRQADEAFIVHSDS---------------SVLQSRP--- 123 (261)
T ss_dssp EEESSCSSSCCEEEEEEECCCT-----TTSCSCEEEE---ESSCCSEEEEECCCC---------------CSSCCCC---
T ss_pred hhhcccccCCCceEEEEEeecC-----CCCccceEEE---EccchhceEEcCCCC---------------CCCcCcc---
Confidence 11 344555443211 1134699999 555554433332110 0011232
Q ss_pred cEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHH---hhcCCCCEEEEccCCCCCCC
Q 008666 346 NVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKI---AASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 346 ~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~---~~~~~~pvIl~GDFNs~p~s 422 (557)
++.+ + + .+ +.|++||+.... ...+..|+..|.+.+... ......|.||+||||+.|.+
T Consensus 124 --~l~i--~--i---------~g--~~f~s~Hl~~~~--~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 124 --AVGI--R--I---------GT--DVFFTVHALATG--GSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp --EEEE--E--E---------TT--EEEEEEECCTTT--TTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred --eEEE--E--E---------CC--eEEEEeCCCCCC--CchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH
Confidence 2222 2 2 12 899999997654 234666777766665443 11112699999999999765
Q ss_pred hhhhhhh
Q 008666 423 APHALLA 429 (557)
Q Consensus 423 ~~~~lL~ 429 (557)
....|.
T Consensus 185 -~~~~L~ 190 (261)
T 1sr4_B 185 -LEVALR 190 (261)
T ss_dssp -HHHHHT
T ss_pred -HHHHhh
Confidence 334443
No 28
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.68 E-value=1.2e-16 Score=156.13 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=99.1
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCC-CcEEEEeccchhh------HH---HH---hH
Q 008666 203 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR-ADIVCLQEVQNDH------FE---EF---FA 269 (557)
Q Consensus 203 ~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~-aDIIcLQEV~~~~------~~---~~---l~ 269 (557)
....+|||||||.....++ .-.|. .-|.+.|.+++ +|||.|||++..- -+ .. ..
T Consensus 12 ~~~~~kV~TwNiqgs~~~t----------eskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~ 78 (262)
T 2f1n_A 12 DLTDFRVATWNLQGASATT----------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVR 78 (262)
T ss_dssp CGGGCCEEEEEEEECTTSC----------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCE
T ss_pred ccceeEEEEEEcCCCCCCC----------ccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHH
Confidence 4568999999999743211 11232 34556888888 9999999998430 00 00 01
Q ss_pred HHHhhCC------CeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcc
Q 008666 270 PELDKHG------YQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLV 343 (557)
Q Consensus 270 ~~L~~~g------Y~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~ 343 (557)
+.+...| +.++|..+... ....-|.||+ ||++..+...+ .. .. . ..|-
T Consensus 79 E~~w~lGt~srp~~~yiY~~~~D~-----~~~r~nlAIl---Sr~~adev~vL--p~-----------~~---~-~~Rp- 132 (262)
T 2f1n_A 79 ELIWNLSTNSRPQQVYIYFSAVDA-----LGGRVNLALV---SNRRADEVFVL--SP-----------VR---Q-GGRP- 132 (262)
T ss_dssp EEEEECCSSSSSCEEEEEEECSCS-----SSCSSCEEEE---ESSCCSEEEEE--CC-----------SS---T-TCCC-
T ss_pred HHHHHhCCCCCCceEEEEEeeccC-----CCCceeeEEE---EcccccceEEC--CC-----------CC---C-CCCc-
Confidence 1122345 77777765321 1134599999 77777643322 11 00 0 1332
Q ss_pred cCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhcCC-----CCEEEEccCCC
Q 008666 344 KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-----IPMLVCGDFNS 418 (557)
Q Consensus 344 ~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~~~-----~pvIl~GDFNs 418 (557)
++- .++ + .+.++|||+.+.. ...|..|+..+.+.+... .. .|+||+||||.
T Consensus 133 ----~lg----iri----------~-~~~ff~tHa~a~~--g~da~a~v~~I~~~~~~~---~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 133 ----LLG----IRI----------G-NDAFFTAHAIAMR--NNDAPALVEEVYNFFRDS---RDPVHQALNWMILGDFNR 188 (262)
T ss_dssp ----EEE----EEE----------T-TEEEEEEECCSSS--SCSHHHHHHHHHHHHHTC---SSHHHHTCEEEEEEECSS
T ss_pred ----eEE----EEE----------C-CEEEEEEEecCCC--CccHHHHHHHHHHHHhcC---cccccCCCcEEEEecCCC
Confidence 122 222 1 2889999997763 345888888777766542 23 69999999999
Q ss_pred CCCChhhhhhh
Q 008666 419 VPGSAPHALLA 429 (557)
Q Consensus 419 ~p~s~~~~lL~ 429 (557)
.|++...+++.
T Consensus 189 ~P~sl~~~l~~ 199 (262)
T 2f1n_A 189 EPADLEMNLTV 199 (262)
T ss_dssp CHHHHHTTSCH
T ss_pred CCcchhhhhhc
Confidence 99987776543
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.57 E-value=2.7e-14 Score=147.93 Aligned_cols=173 Identities=21% Similarity=0.215 Sum_probs=98.6
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHh---cCCCcE--EEEeccch-h-------------hH
Q 008666 204 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREII---GYRADI--VCLQEVQN-D-------------HF 264 (557)
Q Consensus 204 ~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~---~~~aDI--IcLQEV~~-~-------------~~ 264 (557)
.-++.|+||||..... . ..|.+.|. ...||| |||||+.. . .+
T Consensus 24 ~~~i~v~TwNv~g~~~-~------------------~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w 84 (347)
T 1i9z_A 24 NVKIFVASYNLNGCSA-T------------------TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREW 84 (347)
T ss_dssp EEEEEEEEEECTTCCC-C------------------SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHH
T ss_pred CcEEEEEeEecCCCCC-c------------------hhHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHH
Confidence 3479999999986321 0 11344554 368999 99999832 1 12
Q ss_pred HHHhHHHHhh-----CCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhh
Q 008666 265 EEFFAPELDK-----HGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNAL 339 (557)
Q Consensus 265 ~~~l~~~L~~-----~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (557)
.+.+...|.. .+|..+....-. .-++++|.|.+....+..-....-. .. +
T Consensus 85 ~~~i~~~L~~~~~~~~~Y~~v~s~~l~---------g~~L~Vfvr~~~~~~i~~v~~~~v~--tG--------------~ 139 (347)
T 1i9z_A 85 ESCVKRLLNGKCTSGPGYVQLRSGQLV---------GTALMIFCKESCLPSIKNVEGTVKK--TG--------------L 139 (347)
T ss_dssp HHHHHHHHHHTCCSSCCEEEEEEEEET---------TEEEEEEEEGGGGGGEEEEEEEEEE--CC--------------C
T ss_pred HHHHHHHHhhcccCCCceeEEEEeecc---------ceEEEEEEehHhhhhccceeeeeEe--cc--------------C
Confidence 3344555653 345443332211 2378899887765444322111000 00 1
Q ss_pred hhcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh---cCCCCEEEEccC
Q 008666 340 NRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---SADIPMLVCGDF 416 (557)
Q Consensus 340 ~R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~---~~~~pvIl~GDF 416 (557)
...+...-|+.+.+.. .+..|+++|+||.++....+.|..|...+++.+.-... ....++|+||||
T Consensus 140 ~g~~gnKGav~vr~~~-----------~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDl 208 (347)
T 1i9z_A 140 GGVSGNKGAVAIRFDY-----------EDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDF 208 (347)
T ss_dssp C----CCEEEEEEEEE-----------TTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEEC
T ss_pred CCccCCCceEEEEEEE-----------CCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEeccc
Confidence 1112233455566655 25679999999988776556799998888766531110 123589999999
Q ss_pred C---CCCCChhhhhhhcC
Q 008666 417 N---SVPGSAPHALLAMG 431 (557)
Q Consensus 417 N---s~p~s~~~~lL~~g 431 (557)
| +.+.+.+.+++..+
T Consensus 209 NyRi~~~~~~v~~~i~~~ 226 (347)
T 1i9z_A 209 NYRISLTYEEVVPCIAQG 226 (347)
T ss_dssp CCCBSSCHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHhhc
Confidence 9 45555566666654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.36 E-value=6.1e-12 Score=130.60 Aligned_cols=167 Identities=18% Similarity=0.152 Sum_probs=90.1
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcE--EEEeccchh--hHHHHhHHHHhhCCCeEE
Q 008666 205 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQND--HFEEFFAPELDKHGYQAL 280 (557)
Q Consensus 205 ~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDI--IcLQEV~~~--~~~~~l~~~L~~~gY~~~ 280 (557)
-++.|+||||.+..-. | ..+. +++...+....||| |+|||+... .+.+.+...|. .+|..+
T Consensus 26 l~i~v~TwNv~g~~~~--------~-~~L~-----~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~-~~Y~~v 90 (357)
T 2xsw_A 26 VALFVATWNMQGQKEL--------P-PSLD-----EFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLG-PHYVLL 90 (357)
T ss_dssp EEEEEEEEECTTCSSC--------C-SCCH-----HHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHC-TTEEEE
T ss_pred ceEEEEEEecCCCCCC--------c-ccHH-----HHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhC-Ccccch
Confidence 4689999999964211 1 1111 22222234468996 999999764 12223333332 234322
Q ss_pred EEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCC
Q 008666 281 YKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQ 360 (557)
Q Consensus 281 ~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~ 360 (557)
....- ..-+++||.|.+..+.+.......-.. .+...+...-|+.+.+..
T Consensus 91 ~s~~l---------~g~~l~Vfvr~~~~~~i~~v~~~~v~t----------------G~~g~~gNKGav~vr~~~----- 140 (357)
T 2xsw_A 91 SSAAH---------GVLYMSLFIRRDLIWFCSEVECSTVTT----------------RIVSQIKTKGALGISFTF----- 140 (357)
T ss_dssp EEEEE---------TTEEEEEEEEGGGGGGBBCCEEEEEEE----------------EEEETTEEEEEEEEEEEE-----
T ss_pred hhhhh---------hhEEEEEEEchHHhhcCceeEeccccc----------------ccccccccccEEEEEEEE-----
Confidence 22211 123688998877544333222111000 000111112234444444
Q ss_pred CCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHh---------------hcCCCCEEEEccCCCCCCC
Q 008666 361 GADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA---------------ASADIPMLVCGDFNSVPGS 422 (557)
Q Consensus 361 ~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~---------------~~~~~pvIl~GDFNs~p~s 422 (557)
.+..|+++|+||.++......|..|...+++.+.--. .....++|++||||...+.
T Consensus 141 ------~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 141 ------FGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp ------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred ------CCeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 2568999999999887666678889888877653100 0012579999999987664
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.07 E-value=9.9e-09 Score=104.02 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=36.3
Q ss_pred cceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhhc---------CCCCEEEEccCCCCCC
Q 008666 368 RQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS---------ADIPMLVCGDFNSVPG 421 (557)
Q Consensus 368 ~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~~---------~~~pvIl~GDFNs~p~ 421 (557)
+..||++|+||.++......|..+...+++.+.--... ...-+|++||||-.-+
T Consensus 134 ~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 134 NTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp TEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred CcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 45799999999888765566777777776654210000 1224999999997543
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.98 E-value=1.4e-08 Score=103.17 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=79.6
Q ss_pred CCCcEE--EEeccchh--hHHHHhHHHHhh---CCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechh
Q 008666 249 YRADIV--CLQEVQND--HFEEFFAPELDK---HGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA 321 (557)
Q Consensus 249 ~~aDII--cLQEV~~~--~~~~~l~~~L~~---~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~ 321 (557)
..+||+ +|||+... ...+.+...|.. ..|..+....-. .-.+++|.|.+..+.+..-....-.
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L~---------gi~l~Vfvk~~~~~~I~~v~~~~v~- 115 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW---------NIKVAVLVKPEHENRISHVSTSSVK- 115 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEET---------TEEEEEEECGGGGGGEEEEEEEEEE-
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeeeh---------heeeeeEEeHHHhhhCcccccceee-
Confidence 357876 99999653 233444555553 357655443322 1367889888655544332211100
Q ss_pred hcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHH-
Q 008666 322 AQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLE- 400 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~- 400 (557)
. .+...+...-|+.+.|.. .+..|+++|+||.++......|..+...+++.+.
T Consensus 116 -t--------------G~~g~~GNKGaV~ir~~~-----------~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f 169 (316)
T 4a9c_A 116 -T--------------GIANTLGNKGAVGVSFMF-----------NGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL 169 (316)
T ss_dssp -E--------------C------CEEEEEEEEEE-----------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC
T ss_pred -e--------------eeeEecCCCceEEEEEEE-----------CCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCC
Confidence 0 011112222344444444 2468999999999887766778888888876642
Q ss_pred --HHhhcCC-----CCEEEEccCCCCCC---ChhhhhhhcC
Q 008666 401 --KIAASAD-----IPMLVCGDFNSVPG---SAPHALLAMG 431 (557)
Q Consensus 401 --~~~~~~~-----~pvIl~GDFNs~p~---s~~~~lL~~g 431 (557)
......+ ..||++||||-.-+ ..+.+++..+
T Consensus 170 ~~~~~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~ 210 (316)
T 4a9c_A 170 GDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRK 210 (316)
T ss_dssp -------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTT
T ss_pred CCCCcCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcc
Confidence 0000111 24899999996433 2334455443
No 33
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=96.19 E-value=0.0035 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.607 Sum_probs=32.4
Q ss_pred cccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHH
Q 008666 14 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 61 (557)
Q Consensus 14 ~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~ 61 (557)
....| ..|++.+.++|..|. ..+||+.+|-+..|+.||..
T Consensus 14 ~~~~C-~~C~~~~~~~Cs~C~-------~v~YCs~~CQ~~~W~~Hk~~ 53 (60)
T 2dj8_A 14 SSESC-WNCGRKASETCSGCN-------TARYCGSFCQHKDWEKHHHI 53 (60)
T ss_dssp CSCCC-SSSCSCCCEECTTTS-------CCEESSHHHHHHTHHHHTTT
T ss_pred CCccc-ccCCCCCcccCCCCC-------CEeeeCHHHHHHHHHHHHHH
Confidence 44568 789998889999883 25699999999999987653
No 34
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=95.93 E-value=0.0077 Score=46.97 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=34.5
Q ss_pred cccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHH
Q 008666 14 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 63 (557)
Q Consensus 14 ~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 63 (557)
....| ..|++.+..+|-.|. ..+||+.+|-+..|+.||..-+
T Consensus 14 ~~~~C-~~C~~~~~~~Cs~Ck-------~v~YCs~eCQ~~~W~~HK~~C~ 55 (70)
T 2d8q_A 14 ERPRC-AYCSAEASKRCSRCQ-------NEWYCCRECQVKHWEKHGKTCV 55 (70)
T ss_dssp CCCBC-SSSCCBCCCBCTTTS-------CCBCSCHHHHHHTHHHHHHHCC
T ss_pred CCCcC-CCCCCcccccCCCCC-------CEeeCCHHHhHHHHHHHHHHHH
Confidence 34578 899998889999884 2568999999999999888664
No 35
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=95.90 E-value=0.0025 Score=46.59 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=30.6
Q ss_pred cCCcccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHH
Q 008666 11 SDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 60 (557)
Q Consensus 11 ~~~~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~ 60 (557)
.+.+...| ..|++.+.++|..|. ..+|||.+|-+..|+.||.
T Consensus 5 ~~~~~~~C-~~C~~~~~~~C~~C~-------~~~YCs~~CQ~~~W~~Hk~ 46 (52)
T 2jw6_A 5 AERKEQSC-VNCGREAMSECTGCH-------KVNYCSTFCQRKDWKDHQH 46 (52)
T ss_dssp ------CC-SSSSSSCSEECTTTC-------SSEESSHHHHHHHTTTGGG
T ss_pred ccccCCcC-CCCCCCCcCcCCCCC-------CEeecCHHHHHHHHHHHCH
Confidence 34556678 899998889999883 2569999999999997664
No 36
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=95.80 E-value=0.0061 Score=46.59 Aligned_cols=41 Identities=22% Similarity=0.582 Sum_probs=33.0
Q ss_pred cccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHH
Q 008666 14 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 62 (557)
Q Consensus 14 ~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 62 (557)
....| ..|++.+.++|..|. ..+|||.+|-+..|+.||..-
T Consensus 16 ~~~~C-~~C~~~~~~~Cs~C~-------~~~YCs~~CQ~~~W~~Hk~~C 56 (64)
T 2odd_A 16 SSESC-WNCGRKASETCSGCN-------TARYCGSFCQHKDWEKHHHIC 56 (64)
T ss_dssp CSSSC-TTTSSCCCEEETTTS-------CCEESSHHHHHHHHHHHTTTT
T ss_pred CCCcC-ccccCCCcccCCCCC-------ChhhCCHHHHHHHHHHHhHHH
Confidence 34568 789998889999884 256999999999999877643
No 37
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=95.71 E-value=0.0072 Score=45.58 Aligned_cols=39 Identities=23% Similarity=0.622 Sum_probs=31.8
Q ss_pred ccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHH
Q 008666 15 VAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 61 (557)
Q Consensus 15 ~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~ 61 (557)
...| ..|++.+.++|..|. ..+||+.+|-+..|+.||..
T Consensus 13 ~~~C-~~C~~~~~~~Cs~C~-------~v~YCs~~CQ~~dW~~Hk~~ 51 (60)
T 2od1_A 13 SESC-WNCGRKASETCSGCN-------TARYCGSFCQHKDWEKHHHI 51 (60)
T ss_dssp SSCC-TTTSSCCCEECTTTS-------CCEESSHHHHHHHHHHHTTT
T ss_pred CCcc-ccCCCcccccCCCCC-------CeeecCHHHHHHHHHHHhHH
Confidence 3468 789998889999883 25699999999999987754
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.56 E-value=0.11 Score=54.86 Aligned_cols=42 Identities=26% Similarity=0.557 Sum_probs=31.9
Q ss_pred cccccccccCCC--cccccchhhccCCCCCcceecChHHHHHhHHHHHHHHH
Q 008666 14 KVAVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 63 (557)
Q Consensus 14 ~~~~c~~~~~~~--~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 63 (557)
....| .+|.+. +...|..|. . ..|||.+|.+..|+.||..-+
T Consensus 46 ~~~~C-~~C~~~~~~~~~C~~C~---~----~~yCs~~Cq~~~w~~Hk~eC~ 89 (429)
T 3qwp_A 46 RGVVC-DRCLLGKEKLMRCSQCR---V----AKYCSAKCQKKAWPDHKRECK 89 (429)
T ss_dssp BTTBC-TTTCCBCSSCEECTTTS---C----CEESSHHHHHHTHHHHHHHHH
T ss_pred CCCcC-cCCCCcCCCCCcCCCCC---C----cccCChhhhhhhhhhhHHhhh
Confidence 34568 788863 458899883 2 469999999999999987654
No 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.12 E-value=0.1 Score=55.10 Aligned_cols=42 Identities=17% Similarity=0.495 Sum_probs=31.9
Q ss_pred cccccccccCCC--cccccchhhccCCCCCcceecChHHHHHhHHHHHHHHH
Q 008666 14 KVAVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 63 (557)
Q Consensus 14 ~~~~c~~~~~~~--~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 63 (557)
....| .+|.+. +...|+.|. ..+|||.+|.+..|+.||..-.
T Consensus 48 ~~~~C-~~C~~~~~~~~~C~~C~-------~~~yCs~~Cq~~~w~~Hk~eC~ 91 (433)
T 3qww_A 48 RGHHC-ECCFARKEGLSKCGRCK-------QAFYCDVECQKEDWPLHKLECS 91 (433)
T ss_dssp TTTBC-TTTCCBCSSCEECTTTS-------CCEESSHHHHHHHHHHHTTTHH
T ss_pred cCCcC-CcccccCCCCCCCCCCc-------ceeecChhhhhhhhhHHHHHHH
Confidence 34568 788864 458899884 2569999999999998876554
No 40
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.85 E-value=0.2 Score=53.75 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=31.2
Q ss_pred ccccccccCCC--cccccchhhccCCCCCcceecChHHHHHhHHHHHHHHH
Q 008666 15 VAVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 63 (557)
Q Consensus 15 ~~~c~~~~~~~--~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 63 (557)
...| .+|.+. +.+.|+.|. . .+|||.+|.+..|+.||..-.
T Consensus 49 ~~~C-~~C~~~~~~~~~C~~C~---~----~~yCs~~Cq~~~w~~Hk~eC~ 91 (490)
T 3n71_A 49 NFVC-HTCFKRQEKLHRCGQCK---F----AHYCDRTCQKDAWLNHKNECA 91 (490)
T ss_dssp TTBC-TTTCCBCSCCEECTTTS---C----CEESSHHHHHHHHHHHHHHHH
T ss_pred CCcC-CCCCCCCCCCCCCCCCC---C----cCcCCHHHhhhhhhHHHHHhH
Confidence 4567 788653 457899883 2 469999999999999987665
No 41
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.71 E-value=0.44 Score=35.12 Aligned_cols=30 Identities=37% Similarity=0.882 Sum_probs=23.5
Q ss_pred ccccccccCCCcccccchhhccCCCCCcceecChHHHHH
Q 008666 15 VAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 15 ~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~ 53 (557)
+..| .-|+..++-.||.| +++ |||-.|||.
T Consensus 12 ~~~C-~vC~~~~kY~CPrC---~~~-----yCSl~C~k~ 41 (56)
T 2yqq_A 12 TVVC-VICLEKPKYRCPAC---RVP-----YCSVVCFRK 41 (56)
T ss_dssp CCCC-TTTCSCCSEECTTT---CCE-----ESSHHHHHH
T ss_pred CCcc-CcCcCCCeeeCCCC---CCC-----eeCHHHHHH
Confidence 3457 56888888999999 444 999999874
No 42
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=82.60 E-value=0.42 Score=35.51 Aligned_cols=29 Identities=28% Similarity=0.729 Sum_probs=22.3
Q ss_pred cccccccC----CCcccccchhhccCCCCCcceecChHHHHH
Q 008666 16 AVCSVHPS----EQATLQCLGCVKAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 16 ~~c~~~~~----~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~ 53 (557)
..| .-|. +.++-.||.| +++ |||-.|||.
T Consensus 12 ~~C-~vC~~~~~~~akY~CPrC---~~r-----YCSl~C~k~ 44 (59)
T 1x4s_A 12 GPC-GFCPAGEVQPARYTCPRC---NAP-----YCSLRCYRT 44 (59)
T ss_dssp EEE-CSSCTTCCEEECEECTTT---CCE-----ESSHHHHHH
T ss_pred CcC-cCCCCCcCCCccccCcCC---CCC-----ccChHHHHH
Confidence 457 5676 3578999988 555 999999993
No 43
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=54.59 E-value=4.7 Score=30.77 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=15.6
Q ss_pred ccccchhhccCC---CCCcceecChHHHH
Q 008666 27 TLQCLGCVKAKI---PVAKSYHCSPKCFS 52 (557)
Q Consensus 27 ~l~c~~c~~~~~---~~~~~~fc~~~cf~ 52 (557)
+..||+|.|.-. .....-|||+-|-.
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~ 37 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQL 37 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHh
Confidence 456777766521 01234499999954
No 44
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=48.00 E-value=16 Score=33.88 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.8
Q ss_pred eeecCCccCCCceEEEEEEE
Q 008666 131 KTYTPSADDIGHVLKFECVV 150 (557)
Q Consensus 131 ~~y~P~~~d~g~~l~~~~~~ 150 (557)
..|.|.+.|||.+|+++|++
T Consensus 65 ~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 65 SVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp SEECCCGGGBTSEEEEEEEE
T ss_pred ccccCCccccccEEEEEEec
Confidence 67999999999999999987
No 45
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=30.25 E-value=20 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=17.7
Q ss_pred ccccchhhccCCCC----CcceecChHHHHHh
Q 008666 27 TLQCLGCVKAKIPV----AKSYHCSPKCFSDA 54 (557)
Q Consensus 27 ~l~c~~c~~~~~~~----~~~~fc~~~cf~~~ 54 (557)
.+.|-.|-+.|... ...-|||..|=|..
T Consensus 6 ~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry 37 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSRSY 37 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHHHH
T ss_pred eehhhhhcCcchhhhhccCCcceechhhhCcc
Confidence 46677777765531 11238999998763
No 46
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.11 E-value=11 Score=22.72 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.8
Q ss_pred ccccchhhcc
Q 008666 27 TLQCLGCVKA 36 (557)
Q Consensus 27 ~l~c~~c~~~ 36 (557)
..|||+|.+.
T Consensus 6 ~vqcpvcqq~ 15 (29)
T 3vhs_A 6 QVQCPVCQQM 15 (29)
T ss_dssp EEECTTTCCE
T ss_pred eeeChHHHHh
Confidence 4799999764
No 47
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=28.40 E-value=20 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=13.8
Q ss_pred ccCCCCCcceecChHHHHH
Q 008666 35 KAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 35 ~~~~~~~~~~fc~~~cf~~ 53 (557)
+.-|.....||||++|-+.
T Consensus 20 ~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 20 SKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp TTSEESSSCEESSHHHHHT
T ss_pred HHhhhcCCeEEehHHHHcc
Confidence 3445566789999999764
No 48
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.03 E-value=34 Score=25.78 Aligned_cols=28 Identities=39% Similarity=0.933 Sum_probs=20.9
Q ss_pred ccccccCCCcccccchhhccCCCCCcceecChHHHHH
Q 008666 17 VCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSD 53 (557)
Q Consensus 17 ~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~ 53 (557)
-| .-|.+.|+|+|..|-- -.||. -||++
T Consensus 10 WC-~ICneDAtlrC~gCdg-------DLYC~-rC~rE 37 (67)
T 2d8v_A 10 WC-CICNEDATLRCAGCDG-------DLYCA-RCFRE 37 (67)
T ss_dssp SC-TTTCSCCCEEETTTTS-------EEECS-SHHHH
T ss_pred ee-EEeCCCCeEEecCCCC-------ceehH-HHHHH
Confidence 35 6789999999998832 34775 58876
Done!