Query 008667
Match_columns 557
No_of_seqs 192 out of 969
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 8E-102 3E-106 872.6 49.9 526 6-538 68-623 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 1E-100 5E-105 862.4 58.1 529 1-538 93-627 (759)
3 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 5.1E-62 1.7E-66 512.6 34.5 329 1-329 64-396 (410)
4 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 5.1E-59 1.7E-63 483.7 27.7 313 1-313 47-363 (364)
5 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 2.1E-56 7E-61 462.4 32.0 307 1-315 44-353 (354)
6 2wzk_A Cullin-5, CUL-5; UBL co 100.0 3.3E-54 1.1E-58 451.5 29.9 307 1-313 50-379 (391)
7 3dpl_C Cullin-5; ubiquitin, NE 100.0 1.4E-49 4.7E-54 413.3 23.9 223 314-538 3-235 (382)
8 1dp3_A TRAM protein; helix-loo 63.6 3.1 0.00011 29.2 1.6 45 95-139 9-54 (55)
9 1sfx_A Conserved hypothetical 61.9 4.9 0.00017 31.9 2.9 38 501-538 17-54 (109)
10 3cuo_A Uncharacterized HTH-typ 61.2 7.9 0.00027 30.3 4.1 46 503-548 23-71 (99)
11 3tgn_A ADC operon repressor AD 59.3 8.9 0.0003 32.3 4.3 48 500-548 34-84 (146)
12 3hsr_A HTH-type transcriptiona 56.3 7.1 0.00024 32.9 3.1 49 501-549 33-84 (140)
13 3bpv_A Transcriptional regulat 56.1 8.4 0.00029 32.1 3.6 37 502-538 27-63 (138)
14 3ech_A MEXR, multidrug resista 55.7 6.6 0.00023 33.1 2.9 49 501-549 34-85 (142)
15 3cdh_A Transcriptional regulat 55.3 11 0.00039 32.1 4.4 47 502-548 41-90 (155)
16 1fse_A GERE; helix-turn-helix 54.4 14 0.00047 27.1 4.2 35 501-537 11-45 (74)
17 3g3z_A NMB1585, transcriptiona 53.9 7.7 0.00026 32.8 3.0 49 502-550 29-80 (145)
18 1tbx_A ORF F-93, hypothetical 52.8 9.6 0.00033 30.0 3.2 38 501-538 5-46 (99)
19 2gxg_A 146AA long hypothetical 52.6 13 0.00046 31.1 4.3 36 502-538 35-70 (146)
20 2qww_A Transcriptional regulat 52.5 8.6 0.0003 32.8 3.1 46 502-547 39-87 (154)
21 3nrv_A Putative transcriptiona 52.4 10 0.00035 32.0 3.6 48 501-548 37-87 (148)
22 2fbh_A Transcriptional regulat 52.3 9.9 0.00034 31.9 3.4 47 502-548 35-85 (146)
23 3k0l_A Repressor protein; heli 51.6 10 0.00035 32.8 3.5 48 502-549 44-94 (162)
24 1je8_A Nitrate/nitrite respons 51.2 15 0.00052 27.9 4.0 35 501-537 21-55 (82)
25 2dk5_A DNA-directed RNA polyme 51.2 6.8 0.00023 30.9 1.9 49 498-546 14-67 (91)
26 1xn7_A Hypothetical protein YH 50.7 11 0.00036 28.9 2.9 29 509-537 7-35 (78)
27 2nnn_A Probable transcriptiona 50.0 9.9 0.00034 31.6 3.0 38 501-538 35-72 (140)
28 3bja_A Transcriptional regulat 49.9 8.2 0.00028 32.1 2.5 47 502-548 31-80 (139)
29 4hbl_A Transcriptional regulat 49.8 10 0.00035 32.3 3.1 50 501-550 38-90 (149)
30 3eco_A MEPR; mutlidrug efflux 49.4 11 0.00036 31.6 3.1 48 501-548 28-80 (139)
31 3r0a_A Putative transcriptiona 49.2 11 0.00037 31.4 3.1 49 500-548 22-75 (123)
32 1u2w_A CADC repressor, cadmium 48.9 10 0.00036 31.4 2.9 46 503-548 41-89 (122)
33 2a61_A Transcriptional regulat 48.8 10 0.00035 31.8 2.9 37 502-538 31-67 (145)
34 3jth_A Transcription activator 48.6 14 0.00048 29.0 3.6 45 503-548 22-69 (98)
35 2htj_A P fimbrial regulatory p 48.2 14 0.00046 28.0 3.3 31 508-538 4-34 (81)
36 2fa5_A Transcriptional regulat 48.2 13 0.00045 31.9 3.6 48 502-549 47-97 (162)
37 3oop_A LIN2960 protein; protei 47.9 8.6 0.00029 32.4 2.3 49 501-549 34-85 (143)
38 1jgs_A Multiple antibiotic res 47.7 10 0.00036 31.5 2.8 47 502-548 32-81 (138)
39 3bj6_A Transcriptional regulat 47.7 11 0.00039 31.8 3.1 47 502-548 38-87 (152)
40 3bdd_A Regulatory protein MARR 47.6 11 0.00036 31.5 2.8 38 501-538 28-65 (142)
41 1x3u_A Transcriptional regulat 47.1 22 0.00075 26.4 4.3 34 502-537 17-50 (79)
42 3bro_A Transcriptional regulat 47.0 14 0.00049 30.7 3.6 47 502-548 32-83 (141)
43 2d1h_A ST1889, 109AA long hypo 46.7 13 0.00045 29.3 3.1 47 502-548 19-69 (109)
44 2fbi_A Probable transcriptiona 46.6 10 0.00035 31.6 2.6 37 502-538 34-70 (142)
45 2pex_A Transcriptional regulat 46.5 12 0.00043 31.7 3.1 37 502-538 45-81 (153)
46 3cjn_A Transcriptional regulat 46.4 12 0.00042 32.1 3.1 47 502-548 50-99 (162)
47 3c57_A Two component transcrip 46.2 15 0.00052 28.8 3.4 35 501-537 27-61 (95)
48 2p5k_A Arginine repressor; DNA 46.1 16 0.00055 25.9 3.2 40 506-545 7-51 (64)
49 2bv6_A MGRA, HTH-type transcri 45.9 9.5 0.00033 32.0 2.3 37 502-538 35-71 (142)
50 2hr3_A Probable transcriptiona 45.9 13 0.00044 31.3 3.1 48 501-548 32-83 (147)
51 2p7v_B Sigma-70, RNA polymeras 45.7 24 0.00082 25.5 4.2 36 502-537 6-44 (68)
52 3kp7_A Transcriptional regulat 45.6 9.6 0.00033 32.5 2.2 46 501-547 35-83 (151)
53 2rdp_A Putative transcriptiona 45.4 12 0.00041 31.7 2.8 47 502-548 40-89 (150)
54 2eth_A Transcriptional regulat 45.3 12 0.00042 31.9 2.9 37 502-538 42-78 (154)
55 1ub9_A Hypothetical protein PH 45.1 10 0.00035 29.6 2.2 44 503-546 15-61 (100)
56 1oks_A RNA polymerase alpha su 44.8 25 0.00085 24.3 3.6 45 368-412 5-49 (56)
57 1lj9_A Transcriptional regulat 44.7 10 0.00035 31.8 2.3 47 502-548 27-76 (144)
58 1qgp_A Protein (double strande 44.3 11 0.00038 28.6 2.2 42 507-548 17-64 (77)
59 2heo_A Z-DNA binding protein 1 44.0 9 0.00031 28.1 1.5 37 505-541 11-48 (67)
60 3t72_q RNA polymerase sigma fa 43.8 21 0.00073 28.5 3.9 36 502-537 20-58 (99)
61 3ulq_B Transcriptional regulat 43.8 22 0.00077 27.6 4.0 39 498-538 26-64 (90)
62 2k02_A Ferrous iron transport 43.5 13 0.00044 29.1 2.4 29 509-537 7-35 (87)
63 3omy_A Protein TRAM; DNA bindi 43.3 13 0.00043 25.8 2.0 42 93-135 8-49 (52)
64 2nyx_A Probable transcriptiona 42.6 12 0.00041 32.7 2.4 47 501-547 42-91 (168)
65 2frh_A SARA, staphylococcal ac 42.3 11 0.00037 31.3 2.0 50 501-550 34-88 (127)
66 1tc3_C Protein (TC3 transposas 42.3 27 0.00092 22.7 3.8 31 508-540 13-43 (51)
67 1s3j_A YUSO protein; structura 42.2 11 0.00036 32.2 2.0 48 501-548 34-84 (155)
68 3pqk_A Biofilm growth-associat 42.1 22 0.00076 28.0 3.8 45 503-548 22-69 (102)
69 3s2w_A Transcriptional regulat 41.5 10 0.00035 32.6 1.8 47 502-548 48-97 (159)
70 2e1c_A Putative HTH-type trans 41.1 19 0.00064 31.8 3.5 53 481-537 8-60 (171)
71 3e6m_A MARR family transcripti 41.0 12 0.00041 32.3 2.1 49 502-550 51-102 (161)
72 1tty_A Sigma-A, RNA polymerase 40.9 27 0.00094 26.7 4.1 36 502-537 19-57 (87)
73 3deu_A Transcriptional regulat 40.6 17 0.00058 31.7 3.1 48 502-549 51-102 (166)
74 2pn6_A ST1022, 150AA long hypo 40.6 27 0.00092 29.7 4.4 35 503-537 2-36 (150)
75 3boq_A Transcriptional regulat 40.5 15 0.00053 31.3 2.8 47 502-548 45-95 (160)
76 1ku9_A Hypothetical protein MJ 40.3 22 0.00076 29.7 3.8 47 502-548 24-74 (152)
77 2w25_A Probable transcriptiona 39.8 22 0.00074 30.4 3.6 36 502-537 5-40 (150)
78 3f3x_A Transcriptional regulat 39.7 17 0.00058 30.5 2.9 37 501-538 34-70 (144)
79 2x48_A CAG38821; archeal virus 39.6 40 0.0014 22.9 4.4 23 517-539 30-52 (55)
80 3jw4_A Transcriptional regulat 39.3 11 0.00039 31.9 1.7 49 501-549 38-91 (148)
81 1ku3_A Sigma factor SIGA; heli 39.2 29 0.001 25.4 3.9 35 503-537 12-49 (73)
82 1z91_A Organic hydroperoxide r 38.5 13 0.00045 31.2 2.0 48 502-549 38-88 (147)
83 2jml_A DNA binding domain/tran 37.9 20 0.00069 27.2 2.8 33 517-549 4-36 (81)
84 1y0u_A Arsenical resistance op 37.9 26 0.0009 27.3 3.6 34 503-538 30-63 (96)
85 2vqc_A Hypothetical 13.2 kDa p 37.7 13 0.00045 28.7 1.6 51 501-551 10-65 (118)
86 2cfx_A HTH-type transcriptiona 36.5 27 0.00091 29.6 3.6 36 502-537 3-38 (144)
87 1r1u_A CZRA, repressor protein 36.2 29 0.00098 27.7 3.6 44 503-547 25-71 (106)
88 2fu4_A Ferric uptake regulatio 36.2 30 0.001 26.0 3.5 39 500-538 13-58 (83)
89 2ia0_A Putative HTH-type trans 35.8 26 0.00087 30.9 3.5 40 498-537 11-50 (171)
90 2oqg_A Possible transcriptiona 35.6 23 0.00078 28.4 3.0 44 503-547 20-66 (114)
91 2vz4_A Tipal, HTH-type transcr 35.6 29 0.00099 28.0 3.5 38 518-556 1-40 (108)
92 2fxa_A Protease production reg 35.5 18 0.00062 32.9 2.6 47 502-548 46-95 (207)
93 2wte_A CSA3; antiviral protein 35.3 21 0.0007 33.7 2.9 38 501-538 149-186 (244)
94 1qbj_A Protein (double-strande 35.2 24 0.00083 27.0 2.8 33 506-538 12-47 (81)
95 1p6r_A Penicillinase repressor 35.2 27 0.00091 26.3 3.1 38 501-538 6-47 (82)
96 3fm5_A Transcriptional regulat 35.1 22 0.00076 30.0 2.9 48 502-549 37-88 (150)
97 4fx0_A Probable transcriptiona 35.1 31 0.0011 29.3 3.9 36 502-537 31-71 (148)
98 2jpc_A SSRB; DNA binding prote 34.2 25 0.00084 24.6 2.6 29 507-537 4-32 (61)
99 2pg4_A Uncharacterized protein 34.1 30 0.001 26.8 3.3 33 505-537 16-50 (95)
100 2dbb_A Putative HTH-type trans 34.0 31 0.0011 29.4 3.7 36 502-537 7-42 (151)
101 2rnj_A Response regulator prot 33.9 18 0.00062 28.0 2.0 34 502-537 30-63 (91)
102 2cg4_A Regulatory protein ASNC 33.7 31 0.0011 29.5 3.6 36 502-537 6-41 (152)
103 1i1g_A Transcriptional regulat 33.6 25 0.00084 29.5 2.9 35 503-537 3-37 (141)
104 2cyy_A Putative HTH-type trans 33.5 32 0.0011 29.4 3.6 36 502-537 5-40 (151)
105 1oyi_A Double-stranded RNA-bin 33.4 31 0.0011 26.5 3.1 46 507-553 20-68 (82)
106 3nqo_A MARR-family transcripti 32.4 23 0.00079 31.5 2.7 48 502-549 39-91 (189)
107 1jko_C HIN recombinase, DNA-in 32.0 30 0.001 22.8 2.6 34 509-544 14-47 (52)
108 4b8x_A SCO5413, possible MARR- 31.9 23 0.0008 30.1 2.5 49 502-550 33-86 (147)
109 2obp_A Putative DNA-binding pr 31.7 31 0.001 27.4 2.9 38 501-538 13-56 (96)
110 2lkp_A Transcriptional regulat 31.6 35 0.0012 27.6 3.5 42 503-545 31-75 (119)
111 3k69_A Putative transcription 30.9 40 0.0014 29.5 3.9 33 506-538 16-48 (162)
112 2v79_A DNA replication protein 30.9 34 0.0012 29.0 3.3 41 498-538 26-71 (135)
113 4aik_A Transcriptional regulat 30.2 49 0.0017 28.2 4.3 49 501-549 28-80 (151)
114 1sd4_A Penicillinase repressor 30.1 26 0.00088 28.7 2.4 38 501-538 7-48 (126)
115 2o8x_A Probable RNA polymerase 29.9 55 0.0019 23.2 4.0 34 502-537 16-50 (70)
116 3u2r_A Regulatory protein MARR 29.6 25 0.00084 30.5 2.3 47 502-548 44-95 (168)
117 1p4w_A RCSB; solution structur 29.5 40 0.0014 26.7 3.3 35 501-537 34-68 (99)
118 2jt1_A PEFI protein; solution 29.3 26 0.0009 26.5 2.1 30 508-537 8-43 (77)
119 2p5v_A Transcriptional regulat 29.2 40 0.0014 29.1 3.6 36 502-537 8-43 (162)
120 2kko_A Possible transcriptiona 29.1 27 0.00093 28.0 2.3 42 505-547 26-70 (108)
121 2jsc_A Transcriptional regulat 28.3 32 0.0011 28.1 2.6 45 502-547 19-66 (118)
122 3chm_A COP9 signalosome comple 28.3 22 0.00075 31.5 1.7 44 505-548 96-144 (169)
123 1okr_A MECI, methicillin resis 27.8 23 0.0008 28.8 1.7 38 501-538 7-48 (123)
124 1r5q_A KAI A, circadian oscill 27.7 2E+02 0.0067 22.6 6.7 47 279-325 12-58 (102)
125 2fbk_A Transcriptional regulat 27.3 30 0.001 30.4 2.4 47 502-548 67-119 (181)
126 3hug_A RNA polymerase sigma fa 27.1 61 0.0021 24.9 4.0 34 502-537 38-72 (92)
127 1r8d_A Transcription activator 26.6 44 0.0015 26.9 3.1 38 518-556 2-41 (109)
128 2zkz_A Transcriptional repress 26.0 36 0.0012 26.7 2.5 38 503-540 26-63 (99)
129 3on0_A Protein TRAM; DNA bindi 25.6 32 0.0011 28.5 2.0 46 93-139 8-53 (127)
130 1bja_A Transcription regulator 24.9 53 0.0018 26.0 3.2 38 500-537 12-50 (95)
131 2g9w_A Conserved hypothetical 24.7 59 0.002 27.1 3.8 49 501-549 6-62 (138)
132 1ylf_A RRF2 family protein; st 24.7 53 0.0018 28.0 3.5 33 506-538 18-50 (149)
133 2l02_A Uncharacterized protein 24.5 50 0.0017 25.4 2.8 29 508-536 12-40 (82)
134 1p4x_A Staphylococcal accessor 24.0 44 0.0015 31.5 3.0 51 500-550 30-85 (250)
135 1r1t_A Transcriptional repress 23.5 82 0.0028 25.8 4.3 43 503-546 45-90 (122)
136 3i4p_A Transcriptional regulat 22.7 79 0.0027 27.3 4.3 33 505-537 4-36 (162)
137 2yu3_A DNA-directed RNA polyme 22.4 62 0.0021 25.6 3.1 39 501-539 34-74 (95)
138 3lwf_A LIN1550 protein, putati 22.0 87 0.003 27.2 4.4 33 506-538 31-64 (159)
139 2l01_A Uncharacterized protein 21.6 65 0.0022 24.4 2.9 29 508-536 14-43 (77)
140 2lnb_A Z-DNA-binding protein 1 21.5 50 0.0017 25.0 2.2 33 506-538 21-54 (80)
141 1hsj_A Fusion protein consisti 21.4 65 0.0022 33.2 4.0 53 500-552 400-457 (487)
142 3t8r_A Staphylococcus aureus C 21.4 78 0.0027 26.8 3.9 22 517-538 27-48 (143)
143 2qvo_A Uncharacterized protein 21.0 37 0.0013 26.3 1.6 37 502-538 10-50 (95)
144 1p4x_A Staphylococcal accessor 20.9 69 0.0023 30.1 3.7 51 501-551 155-210 (250)
145 3mzy_A RNA polymerase sigma-H 20.9 67 0.0023 27.0 3.4 34 502-537 110-143 (164)
146 1bby_A RAP30; average structur 20.7 1.1E+02 0.0037 22.7 3.9 41 505-545 9-49 (69)
147 1v2z_A Circadian clock protein 20.6 2.4E+02 0.0081 22.5 6.0 42 280-325 20-65 (111)
148 1sfu_A 34L protein; protein/Z- 20.6 65 0.0022 24.3 2.7 30 509-538 20-49 (75)
149 2y75_A HTH-type transcriptiona 20.3 1.1E+02 0.0036 25.1 4.4 23 516-538 24-46 (129)
150 2q2k_A Hypothetical protein; p 20.2 53 0.0018 22.8 2.0 35 226-260 33-69 (70)
151 3f6o_A Probable transcriptiona 20.1 71 0.0024 25.8 3.3 45 503-548 17-64 (118)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=8e-102 Score=872.65 Aligned_cols=526 Identities=34% Similarity=0.601 Sum_probs=499.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC------CccHHHHH
Q 008667 6 FGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH------KTPVHELG 79 (557)
Q Consensus 6 ~~e~LY~~l~~~i~~~l~~i~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~ 79 (557)
+|++||+++++++++|+..++..+....++++|..|.++|.+|+.++.+|+++|+||||+||++.+ .++|+++|
T Consensus 68 ~g~~LY~~l~~~l~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lg 147 (760)
T 1ldj_A 68 VGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLA 147 (760)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHH
Confidence 789999999999999999977766566678999999999999999999999999999999999865 78999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhC------------cccchhhchhhHHHHHH
Q 008667 80 LNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG------------PSVYQEDFEKPFLEVSA 147 (557)
Q Consensus 80 l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg------------~~~Y~~~FE~~~L~~t~ 147 (557)
+.+||++||. .+.+++.++++++|.++|+|+.+|+.+|+++++||++|| ..+|.+.||++||++|.
T Consensus 148 L~~fr~~vf~--~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~ 225 (760)
T 1ldj_A 148 LVTWRDCLFR--PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTE 225 (760)
T ss_dssp HHTTHHHHTT--TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999999999999999999986 36899999999999999
Q ss_pred HHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHH
Q 008667 148 EFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYE 227 (557)
Q Consensus 148 ~yY~~~~~~~~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~ 227 (557)
.||+.++++|+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|+ +|+..||++++.+
T Consensus 226 ~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~ 301 (760)
T 1ldj_A 226 RFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNE 301 (760)
T ss_dssp HHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHhhHhhcCccc--CCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHH
Q 008667 228 DLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPER--LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNS 305 (557)
Q Consensus 228 ~L~~ly~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~--~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~ 305 (557)
+|++||+||+++++|++.|+..|++||++.|.+++.+... ..++..||+.|+++|++|+.++..||++|+.|.+++++
T Consensus 302 dL~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~ 381 (760)
T 1ldj_A 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDK 381 (760)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999876422 24789999999999999999999999999999999999
Q ss_pred HHHHhhccC---------CCcHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHcCC
Q 008667 306 SFEYFINLN---------PRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSG 376 (557)
Q Consensus 306 af~~~ln~~---------~~~~e~La~y~D~~lk~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~ 376 (557)
||+.|+|.+ .++||+||+|||.+||+|.++.++++++..+++++.||+|+++||+|+.+|+++||+|||++
T Consensus 382 af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~ 461 (760)
T 1ldj_A 382 ACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQ 461 (760)
T ss_dssp HHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCccccccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 999999975 78999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcccchhHhHHHhhhhHHhhHHHHHHHhhhcCC-CCCCcceEEEEeccCCCCCCCCCCCCCcH
Q 008667 377 KTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPE-LGDSRTLVVQVLTTGSWPTQPSVTCNLPA 455 (557)
Q Consensus 377 ~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~-~~~~~~~~~~vls~~~WP~~~~~~~~lP~ 455 (557)
++++.+.|+.||++||.+||.+||+||++||+||..|++++..|+++..+ ...+++|+|.|||+++||.++..++.+|+
T Consensus 462 ~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~ 541 (760)
T 1ldj_A 462 NSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPS 541 (760)
T ss_dssp CBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSSEEEEEEEETTTSCCCCCSCCCCCG
T ss_pred CCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCeeEEecCCCCCCCCCCCCCcCCH
Confidence 99999999999999999999999999999999999999999999988654 33478999999999999998888999999
Q ss_pred hHHHHHHHHHHHHhccCCCceeeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHh
Q 008667 456 EMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRL 535 (557)
Q Consensus 456 ~l~~~~~~f~~~Y~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l 535 (557)
+|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++ ++++++||++||+||++||+.++||+++|++.|||+.+.|
T Consensus 542 ~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l 620 (760)
T 1ldj_A 542 ELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFK-NRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDIL 620 (760)
T ss_dssp GGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSS-SCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECC-ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHH
Confidence 999999999999999999999999999999999999997 8899999999999999999999999999999999999988
Q ss_pred hhh
Q 008667 536 EKV 538 (557)
Q Consensus 536 ~~~ 538 (557)
...
T Consensus 621 ~r~ 623 (760)
T 1ldj_A 621 AQV 623 (760)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.4e-100 Score=862.40 Aligned_cols=529 Identities=38% Similarity=0.677 Sum_probs=504.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CccHHH
Q 008667 1 MVLHKFGEKLYSGLVSTMTLHLKEISKSIEA--AQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH-KTPVHE 77 (557)
Q Consensus 1 lc~~k~~e~LY~~l~~~i~~~l~~i~~~l~~--~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~ 77 (557)
||++++|++||+++++.+++|+..+++++.. .+++++|+.|..+|.+|+.++.+|+++|+||||+|+.+++ .++|++
T Consensus 93 lc~~k~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~ 172 (759)
T 2hye_C 93 LCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWD 172 (759)
T ss_dssp HCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHH
Confidence 6999999999999999999999998887754 2335899999999999999999999999999999999976 799999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHh
Q 008667 78 LGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKF 157 (557)
Q Consensus 78 l~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~~~~~ 157 (557)
+|+.+||++|+.++.+.++++++++++|.++|+|+.+|+++++++++||++|+ +|.+.||++||++|.+||+.++++|
T Consensus 173 lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~llk~vi~ml~~L~--vY~~~FE~~fL~~T~~fY~~e~~~~ 250 (759)
T 2hye_C 173 MGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRL 250 (759)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977799999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHHHHHHHHHhhc
Q 008667 158 IECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFR 237 (557)
Q Consensus 158 ~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~ly~L~~ 237 (557)
+++.++++|+++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|++ +|+..||++++.++|++||+|++
T Consensus 251 l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~ 327 (759)
T 2hye_C 251 MQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFS 327 (759)
T ss_dssp HHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999986 48999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhHhhcCcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccC-CC
Q 008667 238 RVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLN-PR 316 (557)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~~-~~ 316 (557)
+++++++.++..|++||++.|.+++.+... +.+||+.|+++|++++.++..||++|+.|.+++++||+.|+|.+ .+
T Consensus 328 rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~---~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~ 404 (759)
T 2hye_C 328 RVRGGQQALLQHWSEYIKTFGTAIVINPEK---DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNK 404 (759)
T ss_dssp HSTTHHHHHHHHHHHHHHHHHHHHHSCGGG---TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSH
T ss_pred cCcchHHHHHHHHHHHHHHHhHHHhcCccc---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999999999976542 46899999999999999999999999999999999999999974 68
Q ss_pred cHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHcc
Q 008667 317 SPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECG 396 (557)
Q Consensus 317 ~~e~La~y~D~~lk~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G 396 (557)
+||+||+|||.+||+|.++.++++++..+++++.||+|+++||+|+.+|+++||+|||.+++++.|.|+.||++||.+||
T Consensus 405 ~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G 484 (759)
T 2hye_C 405 PAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECG 484 (759)
T ss_dssp HHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhC
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhHHHhhhhHHhhHHHHHHHhhhcCCC--CCCcceEEEEeccCCCCCCCCCCCCCcHhHHHHHHHHHHHHhccCCC
Q 008667 397 YQFTSKLEGMFTDMKTSQDTMHEFYASHPEL--GDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTG 474 (557)
Q Consensus 397 ~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~--~~~~~~~~~vls~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~ 474 (557)
.+||+||++||+||..|++++..|+++..+. +.+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+|+|
T Consensus 485 ~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~g 564 (759)
T 2hye_C 485 AAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSG 564 (759)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999876432 34689999999999999998889999999999999999999999999
Q ss_pred ceeeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 475 RRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 475 RkL~w~~~lg~~~l~~~~~~~~~~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
|+|+|.|++|+|+|+++|++ ++++++||++||+||++||+.+++|++||++.||++.+.|...
T Consensus 565 RkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~ 627 (759)
T 2hye_C 565 RKLQWQTTLGHAVLKAEFKE-GKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRT 627 (759)
T ss_dssp EECCBCGGGCEEEEECCCSS-CCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHH
T ss_pred CEEEeccccCcEEEEEEeCC-ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999997 7899999999999999999999999999999999999988754
No 3
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-62 Score=512.63 Aligned_cols=329 Identities=50% Similarity=0.827 Sum_probs=299.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCccHHHHH
Q 008667 1 MVLHKFGEKLYSGLVSTMTLHLK-EISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELG 79 (557)
Q Consensus 1 lc~~k~~e~LY~~l~~~i~~~l~-~i~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~ 79 (557)
||++++|++||+++++.+++|+. .+.+.+.+..++.+|+.|.++|.+|+.++.+|+++|+||||+||++++.++|+++|
T Consensus 64 lc~~k~g~~LY~~l~~~~~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lg 143 (410)
T 4ap2_B 64 MVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLG 143 (410)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHH
Confidence 69999999999999999999999 59999988777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhC---cccchhhchhhHHHHHHHHHHHHHHH
Q 008667 80 LNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG---PSVYQEDFEKPFLEVSAEFYKVESQK 156 (557)
Q Consensus 80 l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg---~~~Y~~~FE~~~L~~t~~yY~~~~~~ 156 (557)
+.+||++|+.++++.++++++++.+|.++|.|+.+|+.+|+++++||++|| ..+|.+.||++||++|.+||+.++++
T Consensus 144 L~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~ 223 (410)
T 4ap2_B 144 LIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQK 223 (410)
T ss_dssp HHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877899999999999999999999999999999999999998 35799999999999999999999999
Q ss_pred hHhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHHHHHHHHHhh
Q 008667 157 FIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLF 236 (557)
Q Consensus 157 ~~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~ly~L~ 236 (557)
|+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|++++++|+..||++++.++|++||+||
T Consensus 224 ~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~ 303 (410)
T 4ap2_B 224 FLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLF 303 (410)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHhhHhhcCcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccCCC
Q 008667 237 RRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPR 316 (557)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~~~~ 316 (557)
+++++|++.|+.+|++||++.|.+++.+.....+|..||+.|+++|++|+.+|..||++|+.|.+++++||+.|+|.+.+
T Consensus 304 ~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~~ 383 (410)
T 4ap2_B 304 SRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNSR 383 (410)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC--
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999887666678999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHh
Q 008667 317 SPEFISLFVDDKL 329 (557)
Q Consensus 317 ~~e~La~y~D~~l 329 (557)
.||+||+|||..-
T Consensus 384 spElla~y~D~~~ 396 (410)
T 4ap2_B 384 SPEYLAENLYFQS 396 (410)
T ss_dssp -------------
T ss_pred CHHHHHHHccCcc
Confidence 9999999999863
No 4
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=5.1e-59 Score=483.72 Aligned_cols=313 Identities=51% Similarity=0.848 Sum_probs=250.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCccHHHHH
Q 008667 1 MVLHKFGEKLYSGLVSTMTLHLK-EISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELG 79 (557)
Q Consensus 1 lc~~k~~e~LY~~l~~~i~~~l~-~i~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~ 79 (557)
||++|+|++||+++++.+++|+. .+.+.+.+..++.+|+.+.++|.+|+.++.+|+++|+||||+|+++++.++|+++|
T Consensus 47 lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lg 126 (364)
T 4eoz_B 47 MVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLG 126 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHH
T ss_pred HHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHH
Confidence 69999999999999999999999 59999988777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhC---cccchhhchhhHHHHHHHHHHHHHHH
Q 008667 80 LNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG---PSVYQEDFEKPFLEVSAEFYKVESQK 156 (557)
Q Consensus 80 l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg---~~~Y~~~FE~~~L~~t~~yY~~~~~~ 156 (557)
+.+||++|+.++++.+++.++++.+|.++|.|+.+|+.+|+++++||++|| ..+|.+.||++||++|.+||+.++++
T Consensus 127 l~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~ 206 (364)
T 4eoz_B 127 LIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQK 206 (364)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877899999999999999999999999999999999999998 35799999999999999999999999
Q ss_pred hHhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHHHHHHHHHhh
Q 008667 157 FIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLF 236 (557)
Q Consensus 157 ~~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~ly~L~ 236 (557)
|+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|++++++|+..||++++.++|++||+|+
T Consensus 207 ~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~ 286 (364)
T 4eoz_B 207 FLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLF 286 (364)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHhhHhhcCcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhcc
Q 008667 237 RRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINL 313 (557)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~ 313 (557)
+++++|++.++.+|++||++.|.+++.+.....+|..||+.|+++|++|+.+|..||++|+.|.+++++||+.|+|.
T Consensus 287 ~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~ 363 (364)
T 4eoz_B 287 SRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNL 363 (364)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTC-------------------------------------------------------
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHhCccccCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999887666678999999999999999999999999999999999999999996
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=2.1e-56 Score=462.43 Aligned_cols=307 Identities=33% Similarity=0.632 Sum_probs=286.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHh-h-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CccHHH
Q 008667 1 MVLHKFGEKLYSGLVSTMTLHLKEISKSIEA-A-QGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH-KTPVHE 77 (557)
Q Consensus 1 lc~~k~~e~LY~~l~~~i~~~l~~i~~~l~~-~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~ 77 (557)
||++++|++||+++++.+++|+..++..+.+ . +++.+|+.+.++|.+|+.++.+|+++|+||||+|+++++ .++|++
T Consensus 44 lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~ 123 (354)
T 4a64_A 44 LCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWD 123 (354)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHH
Confidence 5999999999999999999999985444432 2 346899999999999999999999999999999999876 799999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHh
Q 008667 78 LGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKF 157 (557)
Q Consensus 78 l~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~~~~~ 157 (557)
+|+.+||++|+.++++.+++.++++++|.++|.|+.+|+++|+++++||.+|+ +|.+.||++||++|.+||+.++++|
T Consensus 124 lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~lik~~i~ml~~L~--vY~~~FE~~fL~~t~~fY~~e~~~~ 201 (354)
T 4a64_A 124 MGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQ--IYQDSFEQRFLEETNRLYAAEGQKL 201 (354)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977899999999999999999999999999999999999986 9999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHHHHHHHHHhhc
Q 008667 158 IECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFR 237 (557)
Q Consensus 158 ~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~ly~L~~ 237 (557)
+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|+ .+|+..||++++.++|++||+|++
T Consensus 202 l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll---~~~~~~lL~~~~~~dL~~mY~L~~ 278 (354)
T 4a64_A 202 MQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAIL---QKGLNNLLDENRIQDLSLLYQLFS 278 (354)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHHH---HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999998 479999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhHhhcCcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccCC
Q 008667 238 RVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNP 315 (557)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~~~ 315 (557)
++++|++.++..|++||++.|.+++.+.. ++..||+.|+++|++|+.++..||++|+.|.+++++||+.|+|.++
T Consensus 279 rv~~gl~~l~~~~~~~I~~~G~~iv~~~~---~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 279 RVRGGVQVLLQQWIEYIKAFGSTIVINPE---KDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHSCC---SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCcc---chHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999997654 4578999999999999999999999999999999999999999753
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=3.3e-54 Score=451.48 Aligned_cols=307 Identities=20% Similarity=0.408 Sum_probs=287.5
Q ss_pred CCCC--cchHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC-------
Q 008667 1 MVLH--KFGEKLYSGLVSTMTLHLKEISKSIEAAQ-GGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPST------- 70 (557)
Q Consensus 1 lc~~--k~~e~LY~~l~~~i~~~l~~i~~~l~~~~-~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~------- 70 (557)
||++ ++|++||+++++.+++|+..++..+.... ++.+|+.|.++|.+|+.++.+|+++|+||||+||.+.
T Consensus 50 lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~ 129 (391)
T 2wzk_A 50 VCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSN 129 (391)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 4764 69999999999999999999877776543 5799999999999999999999999999999999753
Q ss_pred -CCccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhC------cccchhhchhhHH
Q 008667 71 -HKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG------PSVYQEDFEKPFL 143 (557)
Q Consensus 71 -~~~~i~~l~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg------~~~Y~~~FE~~~L 143 (557)
+.++|+++|+.+||++|+. ++.+++.++++.+|.++|+|+.+|+++|+++++||+.|| ..+|.+.||++||
T Consensus 130 ~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL 207 (391)
T 2wzk_A 130 MEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYL 207 (391)
T ss_dssp CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHH
Confidence 3579999999999999998 899999999999999999999999999999999999997 4689999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhhcC----cchHHHHHHHHHHHHHhhhhhHHHhcCchhhHH
Q 008667 144 EVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLD----AKSEAKITNVVEKEMIANHMPRLVHMDNSGLVN 219 (557)
Q Consensus 144 ~~t~~yY~~~~~~~~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~----~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ 219 (557)
++|.+||+.++++|+++.++++||++|+.++++|.+||+.||+ ++|.++|.++|+++||.+|++.|++ |+..
T Consensus 208 ~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~ 283 (391)
T 2wzk_A 208 DSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQG 283 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999984 7999
Q ss_pred hhcCCcHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhhHhhcCccc--CCCcHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 008667 220 MLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPER--LKDPVEFVQRLLDEKDKYDNIISSAFNNDK 297 (557)
Q Consensus 220 ll~~~~~~~L~~ly~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~--~~~~~~~I~~ll~l~~~~~~li~~~F~~~~ 297 (557)
||++++.++|++||+||+++++|++.++..|++||++.|.+++.+... ..+|..||+.|+++|++|+.+|..||++|+
T Consensus 284 lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~ 363 (391)
T 2wzk_A 284 MIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDP 363 (391)
T ss_dssp HHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999999999999999998754322 247899999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhcc
Q 008667 298 TFQNALNSSFEYFINL 313 (557)
Q Consensus 298 ~f~~~i~~af~~~ln~ 313 (557)
.|.+++++||+.|+|.
T Consensus 364 ~f~~al~~af~~fiN~ 379 (391)
T 2wzk_A 364 RFLTARDKAYKAVVND 379 (391)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999996
No 7
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=1.4e-49 Score=413.31 Aligned_cols=223 Identities=28% Similarity=0.529 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 008667 314 NPRSPEFISLFVDDKLRKGL--KGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKL 391 (557)
Q Consensus 314 ~~~~~e~La~y~D~~lk~~~--~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~L 391 (557)
..++||+||+|||.+||+|. ++.++++++..|++++.||+|+++||+|+.+|+++||+|||+++|++.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 36899999999999999983 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccc--chhHhHHHhhhhHHhhHHHHHHHhhhcCCCC---CCcceEEEEeccCCCCCC-CCCCCCCcHhHHHHHHHHH
Q 008667 392 KTECGY--QFTSKLEGMFTDMKTSQDTMHEFYASHPELG---DSRTLVVQVLTTGSWPTQ-PSVTCNLPAEMSALCEKFR 465 (557)
Q Consensus 392 k~~~G~--~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~---~~~~~~~~vls~~~WP~~-~~~~~~lP~~l~~~~~~f~ 465 (557)
| +||. +||++|++||+||..|++++..|++...+++ .+++|+|.|||+++||.+ +..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9996 9999999999999999999999998875432 258999999999999987 4679999999999999999
Q ss_pred HHHhccCCCceeeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCC--CCcCHHHHHHhcCCChHHhhhh
Q 008667 466 SYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 466 ~~Y~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~~l~vs~~Qa~iLl~Fn~~--~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+||..+|+||+|+|.|++|+|+|++++++ ++++++||++||+||++||+. ++||++||++.|||+.+.|...
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~ 235 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEV-GQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRT 235 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSS-CEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCC-ceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999998 899999999999999999985 8999999999999999998865
No 8
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=63.60 E-value=3.1 Score=29.19 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhhCcccchhhch
Q 008667 95 TRLLNTLLELVHRERTGEVINR-GLMRNIIKMLMDLGPSVYQEDFE 139 (557)
Q Consensus 95 ~~l~~~ll~~I~~~R~g~~~~~-~~lk~ii~~l~~lg~~~Y~~~FE 139 (557)
+++.+.|-++++..|....-+. --+.++..||..||.-+|.-..|
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGLrVYe~q~E 54 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQME 54 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTTSHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHHHHHHhhc
Confidence 3455666777777775433221 12679999999999888876554
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=61.94 E-value=4.9 Score=31.94 Aligned_cols=38 Identities=5% Similarity=-0.089 Sum_probs=33.0
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.++..|..||..+.....+|..+|++.+|++...+-..
T Consensus 17 ~l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~ 54 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 35888999998887777899999999999999988754
No 10
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=61.15 E-value=7.9 Score=30.26 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEGE 548 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~~ 548 (557)
++.|..||..+.++..+|+.||++.+|++...+...++. .|++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 577888998888887899999999999999998865333 4666443
No 11
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=59.28 E-value=8.9 Score=32.32 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=38.3
Q ss_pred EEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 500 LNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 500 l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
+.+|+.|..||.....++ +|..+|++.+|++...+..+++ =-|++...
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEec
Confidence 457999999999999888 9999999999999999876422 23666543
No 12
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=56.27 E-value=7.1 Score=32.90 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=38.7
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 549 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~ 549 (557)
.+|+.|..||.....++.+|..+|++.+++++..+..++ -=-|++....
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 468899999999988899999999999999999887532 2236665443
No 13
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=56.12 E-value=8.4 Score=32.07 Aligned_cols=37 Identities=5% Similarity=-0.026 Sum_probs=33.0
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+++.|..||.....++.+|..+|++.+|++...+...
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~ 63 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 5889999998888888999999999999999988753
No 14
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=55.72 E-value=6.6 Score=33.09 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=35.2
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCCCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEE 549 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~ 549 (557)
.+|+.|..||.....++.+|..+|++.+|+++..+-.+ +-=-|++..+.
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 46899999999998888999999999999999887753 22236665543
No 15
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=55.34 E-value=11 Score=32.09 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=37.4
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
++..|..||......+.+|..+|++.+|++...+..++ -=-|++...
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 58899999999988889999999999999999877532 123666543
No 16
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.43 E-value=14 Score=27.09 Aligned_cols=35 Identities=9% Similarity=-0.097 Sum_probs=29.2
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
..|.-|..|+.++ ....|..||++.+|+|...+..
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~ 45 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRN 45 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHH
Confidence 3678888888877 4567999999999999998875
No 17
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=53.91 E-value=7.7 Score=32.79 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=38.5
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCCCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEEC 550 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~~ 550 (557)
+|+.|..||......+.+|..+|++.+|+++..+-.+ +-=-|++.....
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 5889999999888777899999999999999987754 222367755443
No 18
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=52.80 E-value=9.6 Score=29.99 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=33.0
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHH----HHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGN----RAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei----~~~t~~~~~~l~~~ 538 (557)
.+++.|..||....+.+.+|..+| ++.++++...+-..
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~ 46 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDA 46 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHH
Confidence 467889999999988889999999 89999999987753
No 19
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=52.58 E-value=13 Score=31.11 Aligned_cols=36 Identities=8% Similarity=-0.138 Sum_probs=31.7
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+|+.|..||.... .+.+|..+|++.+|++...+...
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~ 70 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITAS 70 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHH
Confidence 5888999998888 88899999999999999987753
No 20
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=52.49 E-value=8.6 Score=32.79 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=37.0
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEG 547 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~ 547 (557)
+|+.|..||......+.+|..+|++.+++++..+..+++ =-|++..
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 588999999888888889999999999999998775422 2466654
No 21
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=52.44 E-value=10 Score=32.01 Aligned_cols=48 Identities=8% Similarity=-0.056 Sum_probs=37.9
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGE 548 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~ 548 (557)
.+|+.|..||......+.+|..+|++.+|+++..+-.. +-=-|++..+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 47899999999998888999999999999999987753 1122676554
No 22
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.26 E-value=9.9 Score=31.91 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=36.4
Q ss_pred ecHHHHHHHHhh-hCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 502 VSTYQMCVLMLF-NNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~F-n~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
+++.|..||... ...+.+|..+|++.+|+++..+..+++ =-|++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 577888899888 778889999999999999998875422 23555443
No 23
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=51.60 E-value=10 Score=32.76 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=37.9
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEGEE 549 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~~~ 549 (557)
+|+.|..||.....++.+|..+|++.+|+++..+-.+++- -|++.+..
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 5788999998888888999999999999999988754222 26665443
No 24
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.21 E-value=15 Score=27.93 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=29.3
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.+|.-|..|+.++ ...+|.+||++.+|+|...+..
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 55 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKV 55 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHH
Confidence 3677888888776 4568999999999999999875
No 25
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=51.17 E-value=6.8 Score=30.95 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=38.1
Q ss_pred EEEEecHHHHHHHHhhhC--CCCcCHHHHHHhcCCChHHhhhhhc---cccccC
Q 008667 498 HELNVSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCE 546 (557)
Q Consensus 498 ~~l~vs~~Qa~iLl~Fn~--~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~ 546 (557)
....+++.|..||....+ ++.++..+|++.++++...+..+++ =-||++
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 334678899999988876 6689999999999999999876432 236665
No 26
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=50.65 E-value=11 Score=28.87 Aligned_cols=29 Identities=10% Similarity=-0.072 Sum_probs=25.6
Q ss_pred HHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 509 VLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 509 iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
|+...+++..+|++||++.+++|+..+..
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINA 35 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHH
Confidence 66777888999999999999999999773
No 27
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=50.01 E-value=9.9 Score=31.65 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=32.8
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.++..|..||......+.+|..+|++.+|++...+...
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~ 72 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGV 72 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 45888999998887777999999999999999987753
No 28
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=49.87 E-value=8.2 Score=32.14 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+++.|..||......+.+|..+|++.+|+++..+...+ -=-|++...
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 58899999988888889999999999999998877532 123566443
No 29
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=49.78 E-value=10 Score=32.28 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=38.2
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCCCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGEEC 550 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~~~ 550 (557)
.+|+.|..||.....++.+|..+|++.+++++..+..+++ =-|++....+
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 3688999999988888899999999999999998875422 2377765543
No 30
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=49.37 E-value=11 Score=31.56 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=36.5
Q ss_pred EecHHHHHHHHhhhCCC--CcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 501 NVSTYQMCVLMLFNNAD--RLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~--~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
.+|+.|..||....... .+|..+|++.+|+++..+..+++ =-|++...
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 36788999998877654 89999999999999998775422 23666544
No 31
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=49.23 E-value=11 Score=31.38 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=36.8
Q ss_pred EEecHHHHHHHHhhhCCCC--cCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 500 LNVSTYQMCVLMLFNNADR--LSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 500 l~vs~~Qa~iLl~Fn~~~~--lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
+.++..|..||..+.+.+. +|..||++.+|++...+-..++ =.|++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3468889999988876555 9999999999999998775422 24666443
No 32
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=48.86 E-value=10 Score=31.36 Aligned_cols=46 Identities=4% Similarity=-0.114 Sum_probs=35.3
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEGE 548 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~~ 548 (557)
++.+..||..+.+...+|+.+|++.+|++...+-..++. .|++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 455666787776566799999999999999999876554 5777543
No 33
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.84 E-value=10 Score=31.83 Aligned_cols=37 Identities=5% Similarity=-0.182 Sum_probs=32.6
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+++.|..||......+.+|..+|++.+|++...+...
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~ 67 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGL 67 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHH
Confidence 6888999998888777899999999999999987753
No 34
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=48.61 E-value=14 Score=28.95 Aligned_cols=45 Identities=22% Similarity=0.156 Sum_probs=34.5
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEGE 548 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~~ 548 (557)
++....||....+ ...|+.||++.+|++...+-..++. .|++..+
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4566778877777 7899999999999999998864333 5777543
No 35
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=48.23 E-value=14 Score=28.05 Aligned_cols=31 Identities=6% Similarity=-0.052 Sum_probs=25.3
Q ss_pred HHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 508 CVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 508 ~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.||..+.+...+|..||++.+|+|...+...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~ 34 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYY 34 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4666666667899999999999999988754
No 36
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.22 E-value=13 Score=31.91 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=36.6
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 549 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~ 549 (557)
++..|..||......+.+|..+|++.+|++...+...+ -=-|++....
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 58899999988887889999999999999999877531 2236665543
No 37
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=47.90 E-value=8.6 Score=32.36 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=38.2
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCCCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEE 549 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~ 549 (557)
.+|+.|..||......+.+|..+|++.+|+++..+..+ +-=-|++....
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 35899999998888778999999999999999988754 22236665443
No 38
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=47.69 E-value=10 Score=31.49 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=36.7
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+|+.|+.||......+.+|..+|++.+|++...+..++ -=-|++..+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 57889999988887778999999999999999887532 223566443
No 39
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=47.67 E-value=11 Score=31.85 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=37.0
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+++.|..||......+.+|..+|++.+|++...+...+ -=-|++...
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 58889999998888789999999999999999877532 223555443
No 40
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=47.61 E-value=11 Score=31.53 Aligned_cols=38 Identities=8% Similarity=-0.015 Sum_probs=33.0
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.+++.|..||.....++.+|..+|++.+|++...+...
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~ 65 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRH 65 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 46888999998888777899999999999999987753
No 41
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.15 E-value=22 Score=26.37 Aligned_cols=34 Identities=18% Similarity=-0.045 Sum_probs=28.2
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.|+-|..|+.++ ...+|.+||++.+|+|...+..
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 50 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEV 50 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHH
Confidence 466777788776 5678999999999999998874
No 42
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.02 E-value=14 Score=30.68 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=35.5
Q ss_pred ecHHHHHHHHhhhCCC--CcCHHHHHHhcCCChHHhhhh---hccccccCCC
Q 008667 502 VSTYQMCVLMLFNNAD--RLSYQGNRAGNRDSCFRLEKV---PAISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~--~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~ 548 (557)
+|+.|..||......+ .+|..+|++.+|++...+... +-=-|++...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 5788999998887665 899999999999999987753 1223566443
No 43
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=46.65 E-value=13 Score=29.31 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=35.0
Q ss_pred ecHHHHHHHHhhhC-CCCcCHHHHHHhcCCChHHhhhhhccc---cccCCC
Q 008667 502 VSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVPAIS---GLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~-~~~lt~~ei~~~t~~~~~~l~~~~~~~---~~~~~~ 548 (557)
++..|..+|..+-. .+.+|..||++.+|++...+...++-. |++...
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 46677777755543 678999999999999999988754444 666543
No 44
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.57 E-value=10 Score=31.63 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=32.5
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+|+.|..||......+.+|..+|++.+|++...+..+
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~ 70 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGV 70 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHH
Confidence 5888999998888777899999999999999987753
No 45
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=46.48 E-value=12 Score=31.74 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=32.6
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+++.|..||......+.+|..+|++.++++...+...
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~ 81 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPL 81 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHH
Confidence 5888999998888888899999999999999987753
No 46
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=46.43 E-value=12 Score=32.12 Aligned_cols=47 Identities=21% Similarity=0.136 Sum_probs=37.0
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
++..|..||......+.+|..+|++.+|++...+..+++ =-|++...
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 588999999888888899999999999999998775422 23566443
No 47
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.17 E-value=15 Score=28.84 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=29.9
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.+|.-|..|+.++ ...+|.+||++.+|+|...+..
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 61 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKN 61 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHH
Confidence 4688888888887 5678999999999999999874
No 48
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=46.14 E-value=16 Score=25.94 Aligned_cols=40 Identities=3% Similarity=-0.136 Sum_probs=30.7
Q ss_pred HHHHHHhhhCCCCcCHHHHHHhc-----CCChHHhhhhhcccccc
Q 008667 506 QMCVLMLFNNADRLSYQGNRAGN-----RDSCFRLEKVPAISGLC 545 (557)
Q Consensus 506 Qa~iLl~Fn~~~~lt~~ei~~~t-----~~~~~~l~~~~~~~~~~ 545 (557)
++.|+.+.+....+|.+||++.+ ++|..++-..++-.|++
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE
Confidence 44555566767789999999999 99999888765555655
No 49
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=45.90 E-value=9.5 Score=31.98 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=32.5
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+|+.|..||......+.+|..+|++.+|++...+...
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~ 71 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPL 71 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHH
Confidence 5889999998888878899999999999999887753
No 50
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.86 E-value=13 Score=31.28 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=37.1
Q ss_pred EecHHHHHHHHhhhC-CCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 501 NVSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~-~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
.+++.|..||..... .+.+|..+|++.+|++...+-..+ -=-|++...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 368899999988887 788999999999999999887532 223566443
No 51
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.70 E-value=24 Score=25.51 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=27.0
Q ss_pred ecHHHHHHHHhhh---CCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFN---NADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn---~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.++-|-.|+.+.- +.+..|++||++.+|+|...+..
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~ 44 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQ 44 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 4555666654433 34679999999999999999885
No 52
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=45.56 E-value=9.6 Score=32.45 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=36.9
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEG 547 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~ 547 (557)
.+|+.|..||... ..+++|..+|++.+|+++..+-.. +.=-|++..
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4588999999888 778999999999999999987753 223467765
No 53
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=45.45 E-value=12 Score=31.65 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=36.9
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
+++.|..||......+.+|..+|++.+|++...+...++ =-|++...
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 588899999888877789999999999999998875422 13666543
No 54
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=45.27 E-value=12 Score=31.91 Aligned_cols=37 Identities=5% Similarity=-0.054 Sum_probs=32.3
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+++.|..||....+.+.+|..+|++.++++...+-.+
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~ 78 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNV 78 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHH
Confidence 5888999998887777899999999999999987753
No 55
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=45.13 E-value=10 Score=29.59 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=34.4
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCE 546 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~ 546 (557)
++.+..||..+...+..|+.+|++.+|++...+-..++- -|++.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 677888887776666899999999999999998865433 26665
No 56
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=44.84 E-value=25 Score=24.28 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHcccchhHhHHHhhhhHHh
Q 008667 368 HLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKT 412 (557)
Q Consensus 368 ~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~ 412 (557)
-+.+|++.......+.-..|+..|+..-|.......-+|++-+..
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 467788876666777888899988888888888888888876643
No 57
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=44.73 E-value=10 Score=31.84 Aligned_cols=47 Identities=6% Similarity=-0.092 Sum_probs=36.3
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+|+.|..||......+.+|..+|++.++++...+...+ -=-|++...
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 57888999988887789999999999999999877531 223566443
No 58
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.28 E-value=11 Score=28.56 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=30.0
Q ss_pred HHHHHhhhCCC---CcCHHHHHHhcCCChHHhhhh-hcc--ccccCCC
Q 008667 507 MCVLMLFNNAD---RLSYQGNRAGNRDSCFRLEKV-PAI--SGLCEGE 548 (557)
Q Consensus 507 a~iLl~Fn~~~---~lt~~ei~~~t~~~~~~l~~~-~~~--~~~~~~~ 548 (557)
..||..+.+.. .+|..||++.+|++...+... .+| .|++.+.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 56666555544 899999999999999988864 233 5555443
No 59
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=44.04 E-value=9 Score=28.14 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCC-CCcCHHHHHHhcCCChHHhhhhhcc
Q 008667 505 YQMCVLMLFNNA-DRLSYQGNRAGNRDSCFRLEKVPAI 541 (557)
Q Consensus 505 ~Qa~iLl~Fn~~-~~lt~~ei~~~t~~~~~~l~~~~~~ 541 (557)
..-.||.++.+. ..+|..||++.+|+|...+.+.++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344577777654 5799999999999999998875443
No 60
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=43.81 E-value=21 Score=28.46 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.2
Q ss_pred ecHHHHHHH-Hhhh--CCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVL-MLFN--NADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iL-l~Fn--~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+++-|-.|+ +.|- +.+.+|++||++.+|+|...+..
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~ 58 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQ 58 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 344444444 4442 34689999999999999999875
No 61
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.78 E-value=22 Score=27.65 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=31.2
Q ss_pred EEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 498 HELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 498 ~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
-....|.-|..||.++- ..+|..||++.+|+|..++...
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHH
Confidence 34467888888998887 5689999999999999998853
No 62
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=43.47 E-value=13 Score=29.08 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 509 VLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 509 iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
|+...++...+|++||++.+++|+..+..
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRr 35 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDA 35 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHH
Confidence 66777888999999999999999999774
No 63
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=43.27 E-value=13 Score=25.78 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhCcccch
Q 008667 93 IQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQ 135 (557)
Q Consensus 93 ~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg~~~Y~ 135 (557)
+++++.+.+-.++++.|....-|. -+.++..||.+||.-+|.
T Consensus 8 ~s~~v~~~I~~iVe~r~qeGA~dv-s~Ssv~smLleLGLrVYe 49 (52)
T 3omy_A 8 VNNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLELGLRVYM 49 (52)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred echHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHhhhhhhh
Confidence 345677777788888886554332 367899999999977775
No 64
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=42.58 E-value=12 Score=32.66 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=36.9
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEG 547 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~ 547 (557)
.++..|..||......+.+|..+|++.+|++...+-.+++ =-|++..
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 4688999999888877789999999999999998775322 2356644
No 65
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=42.31 E-value=11 Score=31.33 Aligned_cols=50 Identities=8% Similarity=-0.004 Sum_probs=38.0
Q ss_pred EecHHHHHHHHhhhCC--CCcCHHHHHHhcCCChHHhhhh---hccccccCCCCC
Q 008667 501 NVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEEC 550 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~--~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~~ 550 (557)
.+|+.|..||...... +.+|..+|++.+++++..+..+ +-=-|++.++.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 4688899998777666 7899999999999999887753 223467765443
No 66
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.30 E-value=27 Score=22.69 Aligned_cols=31 Identities=6% Similarity=-0.178 Sum_probs=23.9
Q ss_pred HHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc
Q 008667 508 CVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA 540 (557)
Q Consensus 508 ~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~ 540 (557)
.|+.++.+ .+|..+|++.+|+|...+....+
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHh
Confidence 45555544 47999999999999999887543
No 67
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=42.19 E-value=11 Score=32.21 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=37.3
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
.+|+.|..||......+.+|..+|++.+|++...+...++ =-|++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 4688899999888887789999999999999998775321 23566443
No 68
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=42.11 E-value=22 Score=28.02 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=33.4
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhccc---cccCCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAIS---GLCEGE 548 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~~---~~~~~~ 548 (557)
++....||....+ .+.|+.||++.+|++...+-..++.. |++...
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4555667766665 46999999999999999988765543 777543
No 69
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=41.46 E-value=10 Score=32.62 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=36.1
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+|+.|..||......+.+|..+|++.+++++..+-.++ -=-|++..+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 46778888888877789999999999999999887542 223666544
No 70
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=41.07 E-value=19 Score=31.85 Aligned_cols=53 Identities=4% Similarity=0.014 Sum_probs=33.2
Q ss_pred cCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 481 TNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 481 ~~lg~~~l~~~~~~~~~~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
|+.+++++... ......++..+..||....++..+|+.||++.+|+|+..+..
T Consensus 8 ~~~~~~~~~~~----~~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~ 60 (171)
T 2e1c_A 8 HHHSSGLVPRG----SHMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHE 60 (171)
T ss_dssp --------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred ccccccccccc----cccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 44555555332 223345788999999999888899999999999999998764
No 71
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.00 E-value=12 Score=32.33 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=37.5
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCCCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEEC 550 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~~ 550 (557)
+|+.|..||......+.+|..+|++.+|++...+..+ +-=-|++..+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 5788999998888777999999999999999987753 222366655433
No 72
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.86 E-value=27 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=26.4
Q ss_pred ecHHHHHHH-Hhh--hCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVL-MLF--NNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iL-l~F--n~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+++-|-.|+ +.| .+.+.+|+.||++.+|+|...+..
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~ 57 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQ 57 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHH
Confidence 355555555 333 334679999999999999999885
No 73
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.59 E-value=17 Score=31.67 Aligned_cols=48 Identities=10% Similarity=-0.058 Sum_probs=36.4
Q ss_pred ecHHHHHHHHhhhC-CCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCC
Q 008667 502 VSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 549 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~-~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~ 549 (557)
+|..|..||..... .+.+|..+|++.++++...+-.++ -=-|++..+.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 57889999988876 678999999999999999887542 2236665543
No 74
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=40.57 E-value=27 Score=29.72 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=30.3
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+..+..||....++..+|+.+|++.+|+|+..+..
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~ 36 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSY 36 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 45677888888888899999999999999998774
No 75
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.53 E-value=15 Score=31.35 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=36.2
Q ss_pred ecHHHHHHHHhh-hCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLF-NNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~F-n~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
++..|..||... ...+.+|..+|++.+|++...+..++ -=-|++...
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 688999999888 57778999999999999998876431 223666443
No 76
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=40.30 E-value=22 Score=29.69 Aligned_cols=47 Identities=9% Similarity=-0.061 Sum_probs=32.9
Q ss_pred ecHHHHHHHHhhh-CCCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 502 VSTYQMCVLMLFN-NADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn-~~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
+++.|..+|.... ..+++|..+|++.+|++...+-..++ =-|++...
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4666766664443 34679999999999999998775422 24666554
No 77
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=39.83 E-value=22 Score=30.42 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=31.2
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++..+..||....++..+|+.+|++.+|+|+..+..
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~ 40 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQS 40 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 567788889888877889999999999999998764
No 78
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=39.67 E-value=17 Score=30.49 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=32.1
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.+|+.|..||.....++. |..+|++.+|+++..+-..
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~ 70 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAA 70 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHH
Confidence 468889999988888777 9999999999999987753
No 79
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=39.58 E-value=40 Score=22.91 Aligned_cols=23 Identities=9% Similarity=-0.168 Sum_probs=19.4
Q ss_pred CCcCHHHHHHhcCCChHHhhhhh
Q 008667 517 DRLSYQGNRAGNRDSCFRLEKVP 539 (557)
Q Consensus 517 ~~lt~~ei~~~t~~~~~~l~~~~ 539 (557)
..+|..+|++.+|+|...+....
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 35799999999999999887653
No 80
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=39.28 E-value=11 Score=31.86 Aligned_cols=49 Identities=6% Similarity=-0.071 Sum_probs=31.0
Q ss_pred EecHHHHHHHHhhhCC--CCcCHHHHHHhcCCChHHhhhh---hccccccCCCC
Q 008667 501 NVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEE 549 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~--~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~ 549 (557)
.+|+.|..||...... +.+|..+|++.+++++..+-.+ +-=-|++..+.
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 3588899999877765 7899999999999999887753 22236665554
No 81
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=39.20 E-value=29 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.003 Sum_probs=25.7
Q ss_pred cHHHHHHH-Hhh--hCCCCcCHHHHHHhcCCChHHhhh
Q 008667 503 STYQMCVL-MLF--NNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 503 s~~Qa~iL-l~F--n~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++-|-.|+ +.| .+.+..|++||++.+|+|...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHH
Confidence 55555555 333 233579999999999999999885
No 82
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=38.54 E-value=13 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=37.2
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh---hccccccCCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEE 549 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~ 549 (557)
+|+.|..||......+.+|..+|++.++++...+... +-=-|++....
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 5888999998888777899999999999999987753 22236665543
No 83
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=37.91 E-value=20 Score=27.17 Aligned_cols=33 Identities=9% Similarity=-0.192 Sum_probs=28.4
Q ss_pred CCcCHHHHHHhcCCChHHhhhhhccccccCCCC
Q 008667 517 DRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEE 549 (557)
Q Consensus 517 ~~lt~~ei~~~t~~~~~~l~~~~~~~~~~~~~~ 549 (557)
..+|+.|+++.+|+|+..|.-.-+..||..|.-
T Consensus 4 m~~~i~e~A~~~gvs~~tlR~ye~~~gl~~p~r 36 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAWERRYGFPRPLR 36 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHHHHHTCCSCCBS
T ss_pred CcccHHHHHHHHCcCHHHHHHHHHhCCCCCCcC
Confidence 358999999999999999998878778887753
No 84
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=37.91 E-value=26 Score=27.26 Aligned_cols=34 Identities=12% Similarity=-0.079 Sum_probs=27.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
++.+..||..+ ...+|+.||++.+|+|...+...
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~ 63 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHH
Confidence 45666777777 45699999999999999998764
No 85
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=37.65 E-value=13 Score=28.73 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=38.2
Q ss_pred EecHHHHHHHH--hhhCCCCcCHHHHHHhcCCChHHhhhh-hcccccc--CCCCCC
Q 008667 501 NVSTYQMCVLM--LFNNADRLSYQGNRAGNRDSCFRLEKV-PAISGLC--EGEECS 551 (557)
Q Consensus 501 ~vs~~Qa~iLl--~Fn~~~~lt~~ei~~~t~~~~~~l~~~-~~~~~~~--~~~~~~ 551 (557)
+++.|||+-++ ......++|+++|.....+|.++--.+ -++-.+| +|.||.
T Consensus 10 tlnsy~maeimykil~~k~e~sledilaqfeis~~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 10 TLNSYKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHSEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCTTTEE
T ss_pred HHhHHHHHHHHHHHHHHcCcccHHHHHHHheeccchHhHHHHHHHHHHhcCCchhh
Confidence 56889998664 345678999999999999998875443 4455567 788874
No 86
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=36.47 E-value=27 Score=29.63 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=30.6
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++..+-.||....++..+|+.||++.+|+|+..+..
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~ 38 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 456677888888887889999999999999998775
No 87
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=36.24 E-value=29 Score=27.66 Aligned_cols=44 Identities=9% Similarity=-0.008 Sum_probs=32.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEG 547 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~ 547 (557)
++.+..||..+. ...+|+.||++.+|++...+-..++. .|++..
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 566667776666 45789999999999999998865443 466643
No 88
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.19 E-value=30 Score=26.04 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=32.5
Q ss_pred EEecHHHHHHHHhhhCC--CCcCHHHHHHhc-----CCChHHhhhh
Q 008667 500 LNVSTYQMCVLMLFNNA--DRLSYQGNRAGN-----RDSCFRLEKV 538 (557)
Q Consensus 500 l~vs~~Qa~iLl~Fn~~--~~lt~~ei~~~t-----~~~~~~l~~~ 538 (557)
+..+.-+..||..+.+. ..+|++||++.+ +++..++-..
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~ 58 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRV 58 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHH
Confidence 34678889999999875 589999999999 9998887643
No 89
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=35.78 E-value=26 Score=30.93 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=32.6
Q ss_pred EEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 498 HELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 498 ~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.....+..+..||.....+..+|+.+|++.+|+|+..+..
T Consensus 11 ~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~ 50 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHF 50 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 4445678888899888888899999999999999998764
No 90
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=35.64 E-value=23 Score=28.38 Aligned_cols=44 Identities=16% Similarity=0.012 Sum_probs=33.3
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEG 547 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~ 547 (557)
++.+..||..+ .....|+.+|++.+|++...+...++. .|++..
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeE
Confidence 46677788777 445699999999999999998865433 466644
No 91
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=35.58 E-value=29 Score=27.97 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=29.5
Q ss_pred CcCHHHHHHhcCCChHHhhhhhccccccCCCC--CCccccc
Q 008667 518 RLSYQGNRAGNRDSCFRLEKVPAISGLCEGEE--CSSERTY 556 (557)
Q Consensus 518 ~lt~~ei~~~t~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 556 (557)
.+|++|+++.+|+|+..|.-.-+. ||+.|.. .+.-|.|
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~-Gll~p~~r~~~g~R~Y 40 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI-GLLVPSERSHAGHRRY 40 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH-TSSCCSEECSSCCEEB
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC-CCCCCCccCCCCCeec
Confidence 378999999999999999988675 8887764 2334544
No 92
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.53 E-value=18 Score=32.93 Aligned_cols=47 Identities=6% Similarity=-0.122 Sum_probs=36.9
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+|+.|..||......+.+|..+|++.++++...+..++ -=-|++.+.
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~ 95 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFS 95 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 58999999988877778999999999999999877532 223566443
No 93
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=35.32 E-value=21 Score=33.72 Aligned_cols=38 Identities=13% Similarity=-0.050 Sum_probs=32.4
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.++..|..||..+.+++.+|..||++.+|++..++...
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~ 186 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINK 186 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 35678999998887777899999999999999998754
No 94
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.19 E-value=24 Score=27.02 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=26.0
Q ss_pred HHHHHHhhhCCC---CcCHHHHHHhcCCChHHhhhh
Q 008667 506 QMCVLMLFNNAD---RLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 506 Qa~iLl~Fn~~~---~lt~~ei~~~t~~~~~~l~~~ 538 (557)
+..||..+.++. .+|..+|++.+|+|...++..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 455666665544 899999999999999988853
No 95
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=35.18 E-value=27 Score=26.28 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=31.0
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcC----CChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNR----DSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~----~~~~~l~~~ 538 (557)
.+|..|..||....+.+.+|..||++.++ +++..+-.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~ 47 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTM 47 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHH
Confidence 46889999998887788999999999996 667766543
No 96
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=35.12 E-value=22 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=35.0
Q ss_pred ecHHHHHHHHhhh-CCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCC
Q 008667 502 VSTYQMCVLMLFN-NADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 549 (557)
Q Consensus 502 vs~~Qa~iLl~Fn-~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~ 549 (557)
+|+.|..||.... ..+.+|..+|++.+++++..+-.++ -=-|++.++.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 5788999998775 4457999999999999999887542 2236665543
No 97
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=35.07 E-value=31 Score=29.31 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=28.0
Q ss_pred ecHHHHHHHHhhhCC-----CCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNA-----DRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~-----~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+|+.|..||...... +.+|..+|++.+++++..+-.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr 71 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTR 71 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHH
Confidence 688899999877654 359999999999999998774
No 98
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.21 E-value=25 Score=24.59 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=22.1
Q ss_pred HHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 507 MCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 507 a~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.-|+.++- ..+|..||++.+|+|+..+..
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVET 32 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHH
Confidence 34454453 357999999999999999875
No 99
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=34.09 E-value=30 Score=26.80 Aligned_cols=33 Identities=12% Similarity=-0.052 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCC-CcCHHHHHHhcCCChHH-hhh
Q 008667 505 YQMCVLMLFNNAD-RLSYQGNRAGNRDSCFR-LEK 537 (557)
Q Consensus 505 ~Qa~iLl~Fn~~~-~lt~~ei~~~t~~~~~~-l~~ 537 (557)
-+..+|..+.... .+|..+|++.+|++... +-.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~ 50 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMG 50 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHH
Confidence 3455666666665 89999999999999999 654
No 100
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=34.05 E-value=31 Score=29.35 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=31.2
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++..+-.||..+.++..+|+.+|++.+|+|+..+..
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~ 42 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIAR 42 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 466777888888888899999999999999998764
No 101
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=33.90 E-value=18 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.9
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.|.-|..|+.++ ...+|..||++.+|+|...+..
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~ 63 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKT 63 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHH
Confidence 466777777776 4578999999999999999885
No 102
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=33.72 E-value=31 Score=29.47 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=31.2
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++..+..||....++..+|+.+|++.+|+|+..+..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~ 41 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHV 41 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 566777889888888899999999999999998764
No 103
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=33.59 E-value=25 Score=29.53 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=29.5
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+..+..||..+..+..+|+.+|++.+|+|...+..
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~ 37 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRK 37 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 44577788888777789999999999999998764
No 104
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=33.46 E-value=32 Score=29.39 Aligned_cols=36 Identities=3% Similarity=0.016 Sum_probs=31.2
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++..+..||....++...|+.+|++.+|+|+..+..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~ 40 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHE 40 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 566777888888888899999999999999998774
No 105
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=33.39 E-value=31 Score=26.54 Aligned_cols=46 Identities=4% Similarity=-0.156 Sum_probs=30.0
Q ss_pred HHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhh-c--cccccCCCCCCcc
Q 008667 507 MCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP-A--ISGLCEGEECSSE 553 (557)
Q Consensus 507 a~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~-~--~~~~~~~~~~~~~ 553 (557)
..||.+...+. .|+.||++.+|+|...+...+ + =.|++..+.-.|.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 34444444544 999999999999999988642 2 2456644444443
No 106
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=32.40 E-value=23 Score=31.55 Aligned_cols=48 Identities=6% Similarity=0.061 Sum_probs=36.6
Q ss_pred ecHHHHHHHHhhhC--CCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCC
Q 008667 502 VSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 549 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~--~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~ 549 (557)
+|+.|..||..... .+.+|..+|++.+|++...+..++ -=-|++....
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 68999999987765 568999999999999999887542 2236665443
No 107
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.96 E-value=30 Score=22.81 Aligned_cols=34 Identities=12% Similarity=-0.105 Sum_probs=24.7
Q ss_pred HHHhhhCCCCcCHHHHHHhcCCChHHhhhhhccccc
Q 008667 509 VLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGL 544 (557)
Q Consensus 509 iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~~~~ 544 (557)
|+.+..+ .+|+.+|++.+|+|..++-..++-.++
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 3444544 389999999999999998876555444
No 108
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=31.93 E-value=23 Score=30.07 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=34.8
Q ss_pred ecHHHHHHHHhh--hCCCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCCC
Q 008667 502 VSTYQMCVLMLF--NNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEEC 550 (557)
Q Consensus 502 vs~~Qa~iLl~F--n~~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~~ 550 (557)
+|..|..||... ++...+|..+|++.++++...+..++ -=-|++.+..+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~ 86 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPN 86 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeec
Confidence 577888887655 44567999999999999999877542 22366654433
No 109
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=31.70 E-value=31 Score=27.44 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=31.7
Q ss_pred EecHHHHHHHHhhhCC------CCcCHHHHHHhcCCChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNA------DRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~------~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
-+++.|..+|..+.+. ..+++.+|++.++++...|..+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~ 56 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRV 56 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHH
Confidence 4789999998866553 6799999999999999888754
No 110
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.57 E-value=35 Score=27.62 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=32.1
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---cccc
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLC 545 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~ 545 (557)
++.|..||..+.+ ...|+.+|++.+|++...+-..++. .|++
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv 75 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLV 75 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 4667778877776 6799999999999999997754332 3555
No 111
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=30.90 E-value=40 Score=29.46 Aligned_cols=33 Identities=0% Similarity=-0.032 Sum_probs=25.8
Q ss_pred HHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 506 QMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 506 Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.+.+.+.-+....+|.++|++.+++|+.-+.++
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~ki 48 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNI 48 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 344445545556799999999999999999976
No 112
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.86 E-value=34 Score=28.96 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=32.5
Q ss_pred EEEEecHHHHHHHHhhhC-----CCCcCHHHHHHhcCCChHHhhhh
Q 008667 498 HELNVSTYQMCVLMLFNN-----ADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 498 ~~l~vs~~Qa~iLl~Fn~-----~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.++-+|.-++.+|+.+-. ....|.++|++.+|+++..+..+
T Consensus 26 ~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~ 71 (135)
T 2v79_A 26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNR 71 (135)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 345678888888866654 45689999999999999998754
No 113
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=30.17 E-value=49 Score=28.18 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=36.2
Q ss_pred EecHHHHHHHHhhhC-CCCcCHHHHHHhcCCChHHhhhhhc---cccccCCCC
Q 008667 501 NVSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGEE 549 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~-~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~~ 549 (557)
.+|+.|+.||..... .+..+..+|++.+++++..+..+++ =-|++.+..
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 368899999987764 5678889999999999998875422 136665443
No 114
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=30.09 E-value=26 Score=28.65 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=31.7
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcC----CChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNR----DSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~----~~~~~l~~~ 538 (557)
.+|+.|..||....+.+++|..||++.++ +++.++..+
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~ 48 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTL 48 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHH
Confidence 46899999998888888999999999997 467776643
No 115
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.91 E-value=55 Score=23.25 Aligned_cols=34 Identities=24% Similarity=0.058 Sum_probs=25.4
Q ss_pred ecHHHHHHHHh-hhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLML-FNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~-Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+++-|-.|+.+ |- ..+|.+||++.+|+|+..+..
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~ 50 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRS 50 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHH
Confidence 45566666644 43 358999999999999998874
No 116
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=29.58 E-value=25 Score=30.47 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=32.6
Q ss_pred ecHHHHHHHHhhhC--CCCcCHHHHHHhcCCChHHhhhhhc---cccccCCC
Q 008667 502 VSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVPA---ISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~--~~~lt~~ei~~~t~~~~~~l~~~~~---~~~~~~~~ 548 (557)
+|..|..||..... .+.+|..+|++.++++...+-.+++ =-|++..+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 57889999987776 4689999999999999988775422 23666543
No 117
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.50 E-value=40 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=28.9
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.+|.-|..||.++- ..+|.+||++.+|+|+..+..
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~ 68 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISS 68 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHH
Confidence 46777888887764 578999999999999999874
No 118
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=29.34 E-value=26 Score=26.53 Aligned_cols=30 Identities=3% Similarity=0.061 Sum_probs=23.0
Q ss_pred HHHHhhhCC------CCcCHHHHHHhcCCChHHhhh
Q 008667 508 CVLMLFNNA------DRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 508 ~iLl~Fn~~------~~lt~~ei~~~t~~~~~~l~~ 537 (557)
.||...++. ...|+.||++.+|+|+..+..
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr 43 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRL 43 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHH
Confidence 355555443 789999999999999888664
No 119
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=29.24 E-value=40 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=30.8
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++..+..||....++..+|+.||++.+|+|+..+..
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~ 43 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLR 43 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 566777888888888889999999999999998764
No 120
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=29.14 E-value=27 Score=28.00 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCC
Q 008667 505 YQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEG 547 (557)
Q Consensus 505 ~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~ 547 (557)
.+..||..+.+ ..+|+.||++.+|++...+-..++. .|++..
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~ 70 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEA 70 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 34456666664 6799999999999999998865333 466643
No 121
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=28.30 E-value=32 Score=28.09 Aligned_cols=45 Identities=9% Similarity=-0.075 Sum_probs=33.9
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCC
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEG 547 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~ 547 (557)
.++.+..||..+.+ ...|+.||++.+|++...+-..++. .|++..
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~ 66 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVA 66 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEE
Confidence 35667778877764 4689999999999999998865443 567644
No 122
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=28.28 E-value=22 Score=31.51 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHhcCCC-hHHhhhh-h--cc-ccccCCC
Q 008667 505 YQMCVLMLFNNADRLSYQGNRAGNRDS-CFRLEKV-P--AI-SGLCEGE 548 (557)
Q Consensus 505 ~Qa~iLl~Fn~~~~lt~~ei~~~t~~~-~~~l~~~-~--~~-~~~~~~~ 548 (557)
-+++++.+..++..+|+++|++.++++ ...+|.. . +| .||++++
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGK 144 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 345555444457899999999999999 8888862 2 22 5677654
No 123
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=27.80 E-value=23 Score=28.77 Aligned_cols=38 Identities=11% Similarity=-0.071 Sum_probs=31.6
Q ss_pred EecHHHHHHHHhhhCCCCcCHHHHHHhcC----CChHHhhhh
Q 008667 501 NVSTYQMCVLMLFNNADRLSYQGNRAGNR----DSCFRLEKV 538 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~----~~~~~l~~~ 538 (557)
.+|..|..||....+.+.+|..+|++.++ +++..+-.+
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~ 48 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTL 48 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHH
Confidence 46889999998887778899999999998 777776643
No 124
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=27.67 E-value=2e+02 Score=22.57 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 008667 279 LDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFV 325 (557)
Q Consensus 279 l~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~~~~~~e~La~y~ 325 (557)
-+++..|..++-++|.++.....+|++-...++=.+-.++..+-.+.
T Consensus 12 ~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aFfadi~v~~ivEIHM 58 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTDKALKEKIDKFINAVFCANIPVPEIIEIHM 58 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 34567778999999999877666555433333333555555554443
No 125
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=27.30 E-value=30 Score=30.40 Aligned_cols=47 Identities=15% Similarity=-0.041 Sum_probs=35.0
Q ss_pred ecHHHHHHHHhhhCCC---CcCHHHHHHhcCCChHHhhhhh---ccccccCCC
Q 008667 502 VSTYQMCVLMLFNNAD---RLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 548 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~---~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~ 548 (557)
+|..|..||......+ .+|..+|++.++++...+-.++ -=-|++...
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 5888999998877644 3999999999999999877532 223566544
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.09 E-value=61 Score=24.88 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=25.1
Q ss_pred ecHHHHHHHHh-hhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLML-FNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~-Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
++.-|-.|+.+ |- ..+|+.||++.+|+|...+..
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~ 72 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKS 72 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHH
Confidence 34555555544 43 358999999999999999875
No 127
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.64 E-value=44 Score=26.88 Aligned_cols=38 Identities=13% Similarity=-0.008 Sum_probs=29.0
Q ss_pred CcCHHHHHHhcCCChHHhhhhhccccccCCCC--CCccccc
Q 008667 518 RLSYQGNRAGNRDSCFRLEKVPAISGLCEGEE--CSSERTY 556 (557)
Q Consensus 518 ~lt~~ei~~~t~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 556 (557)
.+|++|+++.+|+|+..|.-.-+ .|+..|.. .+.-|.|
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~-~Gll~p~~~~~~g~R~Y 41 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDN-IELLNPSALTDAGYRLY 41 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHH-TTSSCCSEECTTCCEEB
T ss_pred CccHHHHHHHHCcCHHHHHHHHH-CCCCCCCeECCCCCeee
Confidence 37899999999999999998766 58887754 2334444
No 128
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=26.04 E-value=36 Score=26.73 Aligned_cols=38 Identities=3% Similarity=-0.130 Sum_probs=28.1
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhc
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPA 540 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~ 540 (557)
++....||..+-..++.|+.||++.+|++...+-..++
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45666677433334679999999999999999876533
No 129
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=25.59 E-value=32 Score=28.47 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhCcccchhhch
Q 008667 93 IQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFE 139 (557)
Q Consensus 93 ~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg~~~Y~~~FE 139 (557)
+++++.+.|-.+++..|...+-|. -+.++..||..||+-+|.-.-|
T Consensus 8 vs~~v~~~I~~iVe~r~qeGA~dv-s~SSv~smLlELGLrVY~~Q~E 53 (127)
T 3on0_A 8 VNNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLELGLRVYMIQQE 53 (127)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTC-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHHhHHHHHHHHh
Confidence 356777788888888886555332 3789999999999777764333
No 130
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=24.85 E-value=53 Score=26.00 Aligned_cols=38 Identities=8% Similarity=-0.014 Sum_probs=32.6
Q ss_pred EEecHHHHHHHHhhhCCCCcCHHHHHH-hcCCChHHhhh
Q 008667 500 LNVSTYQMCVLMLFNNADRLSYQGNRA-GNRDSCFRLEK 537 (557)
Q Consensus 500 l~vs~~Qa~iLl~Fn~~~~lt~~ei~~-~t~~~~~~l~~ 537 (557)
..+|..|+.||.....++..|..+|++ ..+|+...+-.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsr 50 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNS 50 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHH
Confidence 457889999999998888999999999 99998777653
No 131
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=24.66 E-value=59 Score=27.14 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=36.1
Q ss_pred EecHHHHHHHHhhhC-CCCcCHHHHHHhcC----CChHHhhhhhc---cccccCCCC
Q 008667 501 NVSTYQMCVLMLFNN-ADRLSYQGNRAGNR----DSCFRLEKVPA---ISGLCEGEE 549 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~-~~~lt~~ei~~~t~----~~~~~l~~~~~---~~~~~~~~~ 549 (557)
.+|..|..||...-+ .+.+|..||++.++ +++..+..+++ =-|++.++.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 368899999988887 58899999999998 78777665322 235554443
No 132
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=24.65 E-value=53 Score=28.01 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=25.1
Q ss_pred HHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 506 QMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 506 Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.+.+.+.-+....+|.++|++.+++|+..+.++
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~ki 50 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKI 50 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 333444444456799999999999999999975
No 133
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.45 E-value=50 Score=25.36 Aligned_cols=29 Identities=21% Similarity=-0.008 Sum_probs=23.2
Q ss_pred HHHHhhhCCCCcCHHHHHHhcCCChHHhh
Q 008667 508 CVLMLFNNADRLSYQGNRAGNRDSCFRLE 536 (557)
Q Consensus 508 ~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~ 536 (557)
.|-.+.|+...+|+++|++.||++.+.+.
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~ 40 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTA 40 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHH
Confidence 35566777779999999999999866654
No 134
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.01 E-value=44 Score=31.51 Aligned_cols=51 Identities=6% Similarity=0.006 Sum_probs=38.4
Q ss_pred EEecHHHHHHHHhhhC--CCCcCHHHHHHhcCCChHHhhhhh---ccccccCCCCC
Q 008667 500 LNVSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEEC 550 (557)
Q Consensus 500 l~vs~~Qa~iLl~Fn~--~~~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~~ 550 (557)
+.+|..|..||....+ .+.+|..||++.+++++..+..++ -=-|++.++.+
T Consensus 30 ~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~ 85 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRS 85 (250)
T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEEC
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCC
Confidence 3479999999988876 458999999999999998877542 22366655443
No 135
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.50 E-value=82 Score=25.77 Aligned_cols=43 Identities=12% Similarity=-0.013 Sum_probs=30.9
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCE 546 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~ 546 (557)
++.+..||..+.+ ...++.+|++.+|++...+-..++. .|++.
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4455567766654 5799999999999999998764333 46654
No 136
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.74 E-value=79 Score=27.26 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 505 YQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 505 ~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
....||....++..+|+.+|++.+|+|+..+..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~ 36 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWR 36 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHH
Confidence 345688888888899999999999999998774
No 137
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.43 E-value=62 Score=25.61 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=34.0
Q ss_pred EecHHHHHHHHhhhC--CCCcCHHHHHHhcCCChHHhhhhh
Q 008667 501 NVSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP 539 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~--~~~lt~~ei~~~t~~~~~~l~~~~ 539 (557)
.++..|..|+-+..+ +..++..+|...|+|+...+.+.+
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiL 74 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKIL 74 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 568999999988877 677999999999999999888653
No 138
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=21.95 E-value=87 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=24.9
Q ss_pred HHHHHHhhhC-CCCcCHHHHHHhcCCChHHhhhh
Q 008667 506 QMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 506 Qa~iLl~Fn~-~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.+.+.+.-+. ...+|.++|++.+++|+..++++
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~ki 64 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQL 64 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 3344444443 45699999999999999999976
No 139
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=21.62 E-value=65 Score=24.37 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=23.9
Q ss_pred HHHHhhhCCCCcCHHHHHHhcCC-ChHHhh
Q 008667 508 CVLMLFNNADRLSYQGNRAGNRD-SCFRLE 536 (557)
Q Consensus 508 ~iLl~Fn~~~~lt~~ei~~~t~~-~~~~l~ 536 (557)
.|-.+.|+...+|+.+|++.||+ +.+.+.
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~ 43 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFF 43 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHH
Confidence 45567788889999999999999 876654
No 140
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=21.46 E-value=50 Score=25.01 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=27.3
Q ss_pred HHHHHHhhhC-CCCcCHHHHHHhcCCChHHhhhh
Q 008667 506 QMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 506 Qa~iLl~Fn~-~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.-.||-.+.+ ...++..+|++.+|++.+.+.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKa 54 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQV 54 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHH
Confidence 3356766766 57899999999999999999976
No 141
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=21.39 E-value=65 Score=33.16 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=42.5
Q ss_pred EEecHHHHHHHHhhhCC--CCcCHHHHHHhcCCChHHhhhh---hccccccCCCCCCc
Q 008667 500 LNVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKV---PAISGLCEGEECSS 552 (557)
Q Consensus 500 l~vs~~Qa~iLl~Fn~~--~~lt~~ei~~~t~~~~~~l~~~---~~~~~~~~~~~~~~ 552 (557)
+.+|..|..||....++ +.+|..||++.++++...+..+ +-=-|++.++.+..
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~ 457 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQ 457 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCS
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCC
Confidence 45799999999999887 8899999999999999988754 22347887766543
No 142
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=21.37 E-value=78 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=20.2
Q ss_pred CCcCHHHHHHhcCCChHHhhhh
Q 008667 517 DRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 517 ~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
..+|.++|++.+|+|+..+.++
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~ki 48 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQL 48 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHH
Confidence 4699999999999999999976
No 143
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.00 E-value=37 Score=26.30 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=27.0
Q ss_pred ecHHHHHHHHhhhC-CCC---cCHHHHHHhcCCChHHhhhh
Q 008667 502 VSTYQMCVLMLFNN-ADR---LSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~-~~~---lt~~ei~~~t~~~~~~l~~~ 538 (557)
++.-+..||+.+-. .+. +|..+|++.++++...+-.+
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~ 50 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLI 50 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHH
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 35566666665532 233 99999999999999987754
No 144
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=20.89 E-value=69 Score=30.11 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=38.1
Q ss_pred EecHHHHHHHHhhhCCC--CcCHHHHHHhcCCChHHhhhhh---ccccccCCCCCC
Q 008667 501 NVSTYQMCVLMLFNNAD--RLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEECS 551 (557)
Q Consensus 501 ~vs~~Qa~iLl~Fn~~~--~lt~~ei~~~t~~~~~~l~~~~---~~~~~~~~~~~~ 551 (557)
.+|+.|..||......+ .+|..+|++.+++++..+..++ -=-|++.++.+.
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 35889999998887654 5999999999999999877532 223777665543
No 145
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.87 E-value=67 Score=26.97 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=26.6
Q ss_pred ecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhh
Q 008667 502 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 537 (557)
Q Consensus 502 vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~ 537 (557)
+++-|-.|+..+ ...+|+.||++.+|+|...+..
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~ 143 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDN 143 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHH
Confidence 466666666643 4578999999999999999874
No 146
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=20.73 E-value=1.1e+02 Score=22.66 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=33.1
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcccccc
Q 008667 505 YQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLC 545 (557)
Q Consensus 505 ~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~~~~~ 545 (557)
+.-.|..+|.++.-||+.+|.+.|+=|..-|..+++=++.-
T Consensus 9 l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia~~ 49 (69)
T 1bby_A 9 VLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQ 49 (69)
T ss_dssp HHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 34467789999999999999999999988888776555443
No 147
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=20.58 E-value=2.4e+02 Score=22.53 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhcc----CCCcHHHHHHHH
Q 008667 280 DEKDKYDNIISSAFNNDKTFQNALNSSFEYFINL----NPRSPEFISLFV 325 (557)
Q Consensus 280 ~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~----~~~~~e~La~y~ 325 (557)
+++..|..++-++|.++.....+|+ +|+|. +-.++..+-.+.
T Consensus 20 ~L~~~YR~ill~YF~~d~~~nq~Id----~FVn~aFfadi~v~~ivEIHM 65 (111)
T 1v2z_A 20 ELRSIYRTIVLEYFNTDAKVNERID----EFVSKAFFADISVSQVLEIHV 65 (111)
T ss_dssp HHHHHHHHHHHHTTCTTSCHHHHHH----HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHH----HHHHHHHHcCCcHHHHHHHHH
Confidence 4566777899999999876555554 66664 555555554443
No 148
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.58 E-value=65 Score=24.28 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=25.2
Q ss_pred HHHhhhCCCCcCHHHHHHhcCCChHHhhhh
Q 008667 509 VLMLFNNADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 509 iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
.+..+.+++..|..+|+.++|++...++.+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~ 49 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQ 49 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHH
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHH
Confidence 355677788899999999999999988864
No 149
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.33 E-value=1.1e+02 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.7
Q ss_pred CCCcCHHHHHHhcCCChHHhhhh
Q 008667 516 ADRLSYQGNRAGNRDSCFRLEKV 538 (557)
Q Consensus 516 ~~~lt~~ei~~~t~~~~~~l~~~ 538 (557)
...+|..+|++.+|+|+..+.++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~i 46 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQL 46 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHH
Confidence 46799999999999999999975
No 150
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=20.16 E-value=53 Score=22.79 Aligned_cols=35 Identities=29% Similarity=0.596 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccCCCCh--HHHHHHHHHHHHHHhhH
Q 008667 226 YEDLGRMYNLFRRVPSGL--LTIREVMTSHLRETGKQ 260 (557)
Q Consensus 226 ~~~L~~ly~L~~~~~~~~--~~l~~~~~~~i~~~g~~ 260 (557)
.++.-.+|.++..++.+. ..++++++.||...|++
T Consensus 33 kedypqifdflenvprgtktahirealrryieeigen 69 (70)
T 2q2k_A 33 KEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGEN 69 (70)
T ss_dssp TTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC--
T ss_pred hhhchHHHHHHHcCCCccchHHHHHHHHHHHHHhccC
Confidence 466777899999888763 57889999999988753
No 151
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=20.13 E-value=71 Score=25.81 Aligned_cols=45 Identities=11% Similarity=-0.065 Sum_probs=33.0
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc---ccccCCC
Q 008667 503 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEGE 548 (557)
Q Consensus 503 s~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~---~~~~~~~ 548 (557)
++....||....+ .+.|+.+|++.+|++...+-..++. .|++..+
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4556667766664 5789999999999999998865443 5666443
Done!